Query psy9378
Match_columns 522
No_of_seqs 395 out of 3265
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 17:34:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7odc_A Protein (ornithine deca 100.0 2.2E-58 7.4E-63 491.3 35.5 313 209-522 36-389 (424)
2 3vab_A Diaminopimelate decarbo 100.0 1.2E-55 4E-60 472.7 30.5 322 184-522 25-397 (443)
3 3n2b_A Diaminopimelate decarbo 100.0 2.9E-55 1E-59 469.4 27.6 321 184-522 27-396 (441)
4 2oo0_A ODC, ornithine decarbox 100.0 1.5E-52 5.1E-57 451.8 37.8 314 208-522 45-399 (471)
5 3btn_A Antizyme inhibitor 1; T 100.0 2.6E-52 9E-57 447.4 32.1 312 209-522 36-387 (448)
6 1f3t_A ODC, ornithine decarbox 100.0 2.7E-51 9.3E-56 436.7 36.7 327 195-522 17-389 (425)
7 3mt1_A Putative carboxynorsper 100.0 4.1E-52 1.4E-56 434.9 24.3 283 209-522 2-324 (365)
8 3n29_A Carboxynorspermidine de 100.0 1.3E-51 4.3E-56 438.2 27.1 288 206-522 39-378 (418)
9 2nva_A Arginine decarboxylase, 100.0 1.7E-49 5.8E-54 415.3 34.9 314 200-522 6-353 (372)
10 2o0t_A Diaminopimelate decarbo 100.0 1.5E-49 5.2E-54 428.1 25.3 337 176-522 12-407 (467)
11 2j66_A BTRK, decarboxylase; bu 100.0 9.9E-49 3.4E-53 416.7 29.5 318 194-522 3-375 (428)
12 2plj_A Lysine/ornithine decarb 100.0 2.3E-48 8E-53 413.5 30.5 313 193-522 39-388 (419)
13 1twi_A Diaminopimelate decarbo 100.0 7.7E-48 2.6E-52 410.6 30.0 322 185-522 7-387 (434)
14 1knw_A Diaminopimelate decarbo 100.0 1.8E-46 6.3E-51 399.5 32.8 302 196-522 14-378 (425)
15 2qgh_A Diaminopimelate decarbo 100.0 6.4E-47 2.2E-51 402.8 28.6 311 194-522 19-378 (425)
16 2yxx_A Diaminopimelate decarbo 100.0 2.5E-44 8.4E-49 378.0 28.2 291 207-522 9-343 (386)
17 3nzp_A Arginine decarboxylase; 100.0 1.4E-43 4.7E-48 390.7 27.1 322 182-509 18-490 (619)
18 2p3e_A Diaminopimelate decarbo 100.0 5.2E-43 1.8E-47 371.7 28.6 315 189-522 15-377 (420)
19 3nzq_A ADC, biosynthetic argin 100.0 1.6E-42 5.6E-47 384.1 26.0 324 181-506 53-532 (666)
20 3n2o_A ADC, biosynthetic argin 100.0 3.5E-42 1.2E-46 380.5 22.4 264 181-445 32-365 (648)
21 2dy3_A Alanine racemase; alpha 99.9 3.6E-28 1.2E-32 252.9 12.6 280 210-517 2-327 (361)
22 1vfs_A Alanine racemase; TIM-b 99.9 1.5E-26 5.1E-31 243.0 14.3 283 209-517 5-339 (386)
23 2vd8_A Alanine racemase; pyrid 99.9 4.1E-26 1.4E-30 240.1 17.5 282 209-516 9-338 (391)
24 1xfc_A Alanine racemase; alpha 99.9 2.3E-26 7.8E-31 241.4 14.2 283 209-518 9-343 (384)
25 1bd0_A Alanine racemase; isome 99.9 4.5E-25 1.6E-29 232.0 12.9 278 210-516 6-331 (388)
26 3anu_A D-serine dehydratase; P 99.9 1.8E-25 6.1E-30 233.5 9.5 238 207-470 8-291 (376)
27 3co8_A Alanine racemase; prote 99.9 2.9E-23 9.9E-28 217.6 11.2 279 209-517 7-334 (380)
28 3gwq_A D-serine deaminase; str 99.8 4.3E-19 1.5E-23 188.8 25.7 233 207-470 42-340 (426)
29 1rcq_A Catabolic alanine racem 99.8 9.2E-21 3.1E-25 196.8 9.5 275 211-517 3-323 (357)
30 2rjg_A Alanine racemase; alpha 99.8 7.7E-19 2.6E-23 184.0 21.4 276 210-516 22-344 (379)
31 3llx_A Predicted amino acid al 99.8 3E-19 1E-23 186.8 16.9 224 205-469 8-285 (376)
32 4ecl_A Serine racemase, vantg; 99.8 2.3E-17 7.9E-22 172.6 26.5 266 211-516 6-335 (374)
33 7odc_A Protein (ornithine deca 99.7 2.3E-17 7.8E-22 175.4 6.1 73 5-77 348-420 (424)
34 3mub_A Alanine racemase; alpha 99.6 4.4E-14 1.5E-18 147.3 23.5 272 209-515 6-328 (367)
35 3e5p_A Alanine racemase; ALR, 99.6 3.4E-15 1.2E-19 156.0 12.5 274 210-516 7-333 (371)
36 3kw3_A Alanine racemase; niaid 99.6 1.7E-14 5.7E-19 151.0 17.6 235 209-469 18-296 (376)
37 3mt1_A Putative carboxynorsper 99.6 2.9E-16 9.9E-21 163.7 4.0 72 5-76 283-354 (365)
38 3n29_A Carboxynorspermidine de 99.6 6.1E-16 2.1E-20 164.1 4.1 73 5-77 337-409 (418)
39 3cpg_A Uncharacterized protein 99.6 4.6E-14 1.6E-18 142.0 16.3 164 214-387 25-246 (282)
40 4a3q_A Alanine racemase 1; iso 99.5 6E-14 2E-18 147.1 15.7 273 209-515 6-330 (382)
41 3vab_A Diaminopimelate decarbo 99.5 1.3E-15 4.4E-20 162.8 3.0 72 5-77 356-427 (443)
42 3btn_A Antizyme inhibitor 1; T 99.5 8.5E-15 2.9E-19 156.6 6.0 75 6-80 347-421 (448)
43 2oo0_A ODC, ornithine decarbox 99.5 1.1E-14 3.7E-19 156.8 6.6 72 6-77 359-430 (471)
44 3n2b_A Diaminopimelate decarbo 99.5 7.2E-15 2.4E-19 156.9 4.8 71 5-77 356-426 (441)
45 3hur_A Alanine racemase; struc 99.5 9.6E-13 3.3E-17 138.4 20.9 263 209-503 7-318 (395)
46 1f3t_A ODC, ornithine decarbox 99.5 1.2E-14 4.2E-19 154.2 5.7 73 7-79 350-422 (425)
47 1knw_A Diaminopimelate decarbo 99.4 1.1E-13 3.9E-18 146.8 3.5 69 8-77 333-408 (425)
48 2o0t_A Diaminopimelate decarbo 99.4 1.2E-13 4.2E-18 148.3 3.1 70 6-75 366-436 (467)
49 2yxx_A Diaminopimelate decarbo 99.4 1.4E-13 4.7E-18 144.1 3.1 71 7-77 304-374 (386)
50 2qgh_A Diaminopimelate decarbo 99.3 3.5E-13 1.2E-17 142.9 4.7 70 7-77 339-408 (425)
51 2j66_A BTRK, decarboxylase; bu 99.3 3.2E-13 1.1E-17 143.2 3.4 70 7-77 336-406 (428)
52 1twi_A Diaminopimelate decarbo 99.3 5.8E-13 2E-17 141.4 3.6 69 8-77 349-417 (434)
53 2nva_A Arginine decarboxylase, 99.2 3E-12 1E-16 133.3 4.6 59 7-65 314-372 (372)
54 2plj_A Lysine/ornithine decarb 99.2 4.9E-12 1.7E-16 134.0 5.0 62 7-68 349-410 (419)
55 3sy1_A UPF0001 protein YGGS; e 99.2 4.4E-10 1.5E-14 110.8 17.9 144 234-387 29-205 (245)
56 2p3e_A Diaminopimelate decarbo 99.2 3.6E-12 1.2E-16 134.7 3.1 70 7-77 338-407 (420)
57 1ct5_A Protein (yeast hypothet 98.9 6E-09 2.1E-13 103.3 11.9 157 217-384 17-219 (256)
58 3r79_A Uncharacterized protein 98.7 2.4E-07 8.2E-12 91.1 14.7 152 218-387 10-197 (244)
59 1xfc_A Alanine racemase; alpha 92.8 0.063 2.2E-06 55.4 3.8 37 8-46 309-347 (384)
60 3obe_A Sugar phosphate isomera 91.8 0.76 2.6E-05 45.5 10.3 95 327-425 77-171 (305)
61 2dy3_A Alanine racemase; alpha 90.3 0.16 5.5E-06 51.8 3.7 35 8-44 294-330 (361)
62 1i60_A IOLI protein; beta barr 89.4 1.9 6.6E-05 40.9 10.5 96 327-427 47-146 (278)
63 3tva_A Xylose isomerase domain 88.5 1.7 5.9E-05 42.0 9.4 95 327-425 52-160 (290)
64 3nzp_A Arginine decarboxylase; 87.8 0.76 2.6E-05 50.6 7.0 63 4-66 470-539 (619)
65 3m0m_A L-rhamnose isomerase; b 87.6 2.2 7.5E-05 45.0 10.1 95 327-424 108-220 (438)
66 3kws_A Putative sugar isomeras 87.4 1.9 6.3E-05 41.7 8.9 95 327-425 65-167 (287)
67 1vfs_A Alanine racemase; TIM-b 87.0 0.28 9.7E-06 50.5 2.9 36 8-46 308-344 (386)
68 3ngf_A AP endonuclease, family 87.0 2.6 8.9E-05 40.4 9.6 94 327-424 49-151 (269)
69 3cqj_A L-ribulose-5-phosphate 86.5 1.8 6.2E-05 42.0 8.3 101 321-426 62-169 (295)
70 2vd8_A Alanine racemase; pyrid 86.1 0.33 1.1E-05 50.2 2.7 38 8-48 309-347 (391)
71 3qc0_A Sugar isomerase; TIM ba 86.0 1.4 4.7E-05 42.0 7.0 95 327-424 46-143 (275)
72 3u0h_A Xylose isomerase domain 85.7 1.2 4.2E-05 42.5 6.5 96 327-425 48-143 (281)
73 1k77_A EC1530, hypothetical pr 84.9 5.9 0.0002 37.3 10.8 95 327-425 41-145 (260)
74 3ktc_A Xylose isomerase; putat 84.4 4.9 0.00017 39.9 10.5 61 327-389 62-130 (333)
75 2x7v_A Probable endonuclease 4 83.4 0.91 3.1E-05 43.7 4.4 93 327-425 48-146 (287)
76 2q02_A Putative cytoplasmic pr 83.3 11 0.00038 35.5 12.2 90 327-426 52-142 (272)
77 1bd0_A Alanine racemase; isome 83.1 0.56 1.9E-05 48.5 2.8 37 8-47 302-339 (388)
78 3vni_A Xylose isomerase domain 82.7 3.8 0.00013 39.4 8.7 95 327-425 48-153 (294)
79 1qtw_A Endonuclease IV; DNA re 81.9 1.3 4.6E-05 42.4 4.9 93 327-425 48-147 (285)
80 3l23_A Sugar phosphate isomera 80.0 4.8 0.00016 39.5 8.3 95 327-425 60-167 (303)
81 3dx5_A Uncharacterized protein 79.9 5.4 0.00018 38.2 8.5 20 329-348 51-70 (286)
82 2g0w_A LMO2234 protein; putati 78.6 16 0.00054 35.3 11.6 88 327-425 69-156 (296)
83 3nzq_A ADC, biosynthetic argin 78.0 3.7 0.00013 45.5 7.4 63 4-66 515-588 (666)
84 1ur4_A Galactanase; hydrolase, 75.4 35 0.0012 35.2 13.6 142 259-413 27-195 (399)
85 3co8_A Alanine racemase; prote 75.2 1.5 5E-05 45.0 3.0 39 8-49 304-343 (380)
86 3cny_A Inositol catabolism pro 75.1 8.5 0.00029 37.0 8.4 94 327-425 56-162 (301)
87 1fob_A Beta-1,4-galactanase; B 73.5 43 0.0015 33.4 13.5 81 327-408 61-162 (334)
88 2zvr_A Uncharacterized protein 73.3 10 0.00035 36.5 8.5 93 327-425 69-171 (290)
89 3f4w_A Putative hexulose 6 pho 73.2 49 0.0017 30.1 12.9 154 223-410 42-209 (211)
90 1bxb_A Xylose isomerase; xylos 73.1 6.7 0.00023 40.1 7.4 97 327-425 70-182 (387)
91 1xla_A D-xylose isomerase; iso 71.9 7 0.00024 40.0 7.2 95 327-425 70-182 (394)
92 3aal_A Probable endonuclease 4 71.1 33 0.0011 33.1 11.7 93 327-425 54-151 (303)
93 1muw_A Xylose isomerase; atomi 70.2 6.5 0.00022 40.1 6.5 95 327-425 70-182 (386)
94 1xim_A D-xylose isomerase; iso 68.4 6 0.00021 40.5 5.8 97 327-425 70-182 (393)
95 2zds_A Putative DNA-binding pr 67.9 4.7 0.00016 39.7 4.7 95 327-425 52-181 (340)
96 1rcq_A Catabolic alanine racem 67.6 3.1 0.0001 42.1 3.3 35 8-44 291-326 (357)
97 2qw5_A Xylose isomerase-like T 67.5 10 0.00035 37.4 7.2 53 327-379 66-124 (335)
98 1hjs_A Beta-1,4-galactanase; 4 67.1 63 0.0022 32.2 13.0 134 259-409 6-162 (332)
99 3qxb_A Putative xylose isomera 65.7 6.5 0.00022 38.5 5.2 51 329-379 73-129 (316)
100 3n2o_A ADC, biosynthetic argin 63.2 6.4 0.00022 43.5 5.0 63 4-66 498-571 (648)
101 3aam_A Endonuclease IV, endoiv 59.4 29 0.001 32.7 8.5 89 327-425 50-141 (270)
102 1vhc_A Putative KHG/KDPG aldol 53.5 1.3E+02 0.0045 28.2 11.9 46 321-375 165-215 (224)
103 2hk0_A D-psicose 3-epimerase; 52.5 33 0.0011 33.1 7.8 94 327-425 67-172 (309)
104 2ftp_A Hydroxymethylglutaryl-C 51.9 47 0.0016 32.6 8.8 70 216-286 27-106 (302)
105 2rjg_A Alanine racemase; alpha 51.8 7.9 0.00027 39.5 3.1 34 8-43 313-347 (379)
106 2qul_A D-tagatose 3-epimerase; 51.8 27 0.00092 33.1 6.9 53 327-379 48-103 (290)
107 3lmz_A Putative sugar isomeras 50.4 27 0.00093 32.7 6.5 21 328-348 63-83 (257)
108 3inp_A D-ribulose-phosphate 3- 49.1 1.5E+02 0.0051 28.4 11.6 24 327-351 122-145 (246)
109 2j6v_A UV endonuclease, UVDE; 48.4 20 0.0007 35.4 5.4 60 327-389 104-169 (301)
110 3vni_A Xylose isomerase domain 48.3 1.2E+02 0.0041 28.6 10.9 96 328-430 90-191 (294)
111 1w8s_A FBP aldolase, fructose- 44.2 93 0.0032 29.9 9.4 101 267-384 44-144 (263)
112 1a0c_A Xylose isomerase; ketol 43.5 73 0.0025 33.2 9.0 69 354-424 157-232 (438)
113 3p14_A L-rhamnose isomerase; T 41.7 2.4E+02 0.0082 29.3 12.3 99 323-425 116-233 (424)
114 3lhl_A Putative agmatinase; pr 41.7 51 0.0017 32.3 7.1 83 265-349 161-248 (287)
115 3u0h_A Xylose isomerase domain 40.5 37 0.0013 31.9 5.8 98 327-430 85-186 (281)
116 1nvm_A HOA, 4-hydroxy-2-oxoval 40.0 70 0.0024 32.0 8.0 155 224-405 72-247 (345)
117 3gr7_A NADPH dehydrogenase; fl 39.2 1.5E+02 0.0052 29.5 10.4 51 290-351 202-252 (340)
118 3p6l_A Sugar phosphate isomera 37.5 60 0.002 30.3 6.7 23 327-349 64-86 (262)
119 3ayv_A Putative uncharacterize 36.4 73 0.0025 29.5 7.1 67 355-425 67-138 (254)
120 1i60_A IOLI protein; beta barr 36.3 1.9E+02 0.0067 26.5 10.2 92 327-430 85-181 (278)
121 1wbh_A KHG/KDPG aldolase; lyas 35.9 2.7E+02 0.0091 25.7 11.9 12 321-333 164-175 (214)
122 2ef5_A Arginase; TTHA1496, str 33.8 75 0.0026 30.9 6.9 82 265-348 170-261 (290)
123 1gq6_A Proclavaminate amidino 33.7 36 0.0012 33.7 4.6 80 266-348 189-278 (313)
124 1ydn_A Hydroxymethylglutaryl-C 33.1 89 0.003 30.3 7.3 103 233-353 71-212 (295)
125 3m1r_A Formimidoylglutamase; s 32.9 68 0.0023 31.9 6.5 81 266-348 197-289 (322)
126 3niq_A 3-guanidinopropionase; 32.6 29 0.00098 34.8 3.6 82 265-349 193-284 (326)
127 3kts_A Glycerol uptake operon 32.2 74 0.0025 29.5 6.1 141 128-285 26-180 (192)
128 3ivs_A Homocitrate synthase, m 31.7 1.8E+02 0.0063 30.1 9.7 26 318-344 140-169 (423)
129 3m6y_A 4-hydroxy-2-oxoglutarat 31.5 1.1E+02 0.0037 29.6 7.1 89 268-370 172-271 (275)
130 3nio_A Guanidinobutyrase; PA14 30.1 50 0.0017 32.8 4.9 81 265-348 196-286 (319)
131 1woh_A Agmatinase; alpha/beta 30.0 1.1E+02 0.0037 30.1 7.3 81 266-348 187-273 (305)
132 3bdk_A D-mannonate dehydratase 29.5 61 0.0021 33.2 5.6 53 327-380 65-120 (386)
133 3iv3_A Tagatose 1,6-diphosphat 28.8 2.5E+02 0.0086 28.1 9.8 158 224-389 10-174 (332)
134 1pq3_A Arginase II, mitochondr 28.2 92 0.0032 30.5 6.5 82 265-348 178-272 (306)
135 3l12_A Putative glycerophospho 27.6 3.6E+02 0.012 26.1 10.8 29 211-241 181-209 (313)
136 3hrd_A Nicotinate dehydrogenas 26.5 46 0.0016 34.5 4.1 67 344-422 200-266 (425)
137 1rvg_A Fructose-1,6-bisphospha 26.4 1.3E+02 0.0043 30.0 7.0 49 246-294 214-263 (305)
138 3eeg_A 2-isopropylmalate synth 25.8 4.3E+02 0.015 26.0 11.0 148 243-406 27-188 (325)
139 3pzt_A Endoglucanase; alpha/be 25.5 4.6E+02 0.016 25.5 11.2 51 331-386 73-126 (327)
140 3ivs_A Homocitrate synthase, m 25.3 3.6E+02 0.012 27.9 10.5 102 166-281 21-127 (423)
141 3hgj_A Chromate reductase; TIM 25.3 1.8E+02 0.0061 29.0 8.1 52 289-350 209-261 (349)
142 2aeb_A Arginase 1; hydrolase, 24.9 1E+02 0.0034 30.5 6.1 82 265-348 182-276 (322)
143 2cev_A Protein (arginase); enz 24.4 96 0.0033 30.3 5.7 82 265-348 177-270 (299)
144 3m0z_A Putative aldolase; MCSG 24.3 96 0.0033 29.7 5.3 84 268-365 149-243 (249)
145 3jr2_A Hexulose-6-phosphate sy 24.0 4.1E+02 0.014 24.1 14.4 73 223-295 48-131 (218)
146 1ccw_A Protein (glutamate muta 23.8 2.5E+02 0.0085 23.8 7.7 51 327-388 42-93 (137)
147 3qvq_A Phosphodiesterase OLEI0 23.6 4.5E+02 0.015 24.4 11.5 46 247-292 200-246 (252)
148 2vnl_A Bifunctional tail prote 23.5 43 0.0015 29.7 2.5 54 127-191 38-95 (151)
149 1tz9_A Mannonate dehydratase; 22.8 1.6E+02 0.0054 29.2 7.2 59 327-385 56-116 (367)
150 2whl_A Beta-mannanase, baman5; 22.6 2.1E+02 0.007 27.3 7.8 54 328-387 33-86 (294)
151 3niy_A Endo-1,4-beta-xylanase; 22.5 1E+02 0.0034 31.0 5.5 57 327-390 204-264 (341)
152 2vp8_A Dihydropteroate synthas 22.2 4.7E+02 0.016 25.9 10.3 61 330-391 151-224 (318)
153 2qul_A D-tagatose 3-epimerase; 22.1 2.5E+02 0.0084 26.1 8.1 97 327-430 89-192 (290)
154 2cw6_A Hydroxymethylglutaryl-C 21.4 4.2E+02 0.014 25.5 9.8 66 216-281 24-97 (298)
155 7a3h_A Endoglucanase; hydrolas 20.6 5.5E+02 0.019 24.4 11.3 52 330-386 47-101 (303)
156 4g3h_A Arginase (ROCF); rossma 20.6 1.3E+02 0.0043 30.1 5.8 83 265-348 187-280 (330)
157 2cks_A Endoglucanase E-5; carb 20.5 5.1E+02 0.017 24.6 10.2 53 330-386 46-101 (306)
158 2isw_A Putative fructose-1,6-b 20.1 1.3E+02 0.0045 30.1 5.7 78 211-293 186-264 (323)
No 1
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00 E-value=2.2e-58 Score=491.32 Aligned_cols=313 Identities=50% Similarity=0.834 Sum_probs=272.9
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------C
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------K 265 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K 265 (522)
.+||||+||++.|++|+++|++++|+++++||+|||+++.|++++.++|+||||+| |
T Consensus 36 ~~tP~~v~dl~~l~~n~~~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~Ii~~g~~k 115 (424)
T 7odc_A 36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCK 115 (424)
T ss_dssp CCCCEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSSC
T ss_pred CCCcEEEeeHHHHHHHHHHHHHhCCCCeEEEEeccCCcHHHHHHHHHcCCcEEECCHHHHHHHHHcCCChhhEEECCCCC
Confidence 58999999999999999999999999999999999999999999999999999999 8
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEE
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGV 345 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Gl 345 (522)
++++|++|+++|+..++|||++||++|.+.+++++|+||||++...+++...+|||++++ ++.++++.+++.++++.||
T Consensus 116 ~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRvn~~~~~~~~~~~skfG~~~~-~~~~~~~~~~~~~l~l~Gl 194 (424)
T 7odc_A 116 QVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLK-TSRLLLERAKELNIDVIGV 194 (424)
T ss_dssp CHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------CCCBCHH-HHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEECCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHhCCCCEEEE
Confidence 999999999999987899999999999999999999999999866666677899999998 9999999998889999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCHHHHHHHHHHHHHhhCCCCCCcEEEec
Q psy9378 346 SFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSMNRIAEIINVALDEYFPVEEGVSIIAE 423 (522)
Q Consensus 346 hfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~~~~a~~I~~~l~~~~~~~~~~~li~E 423 (522)
|||+|||+.+++.|.++++.+.++++.+++.|+++++|||||||++.+ .+++++|++.|+++++++|+...+++|++|
T Consensus 195 h~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G~~~~~ldiGGG~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ii~E 274 (424)
T 7odc_A 195 SFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAE 274 (424)
T ss_dssp ECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSSSCHHHHHHHHHHHHHHHSCGGGTCEEEEC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCCCCCCHHHHHHHHHHHHHHHhcccCCcEEEEC
Confidence 999999999999999999999999998999999999999999999865 358999999999999999874356899999
Q ss_pred CcceeeccceeEEEEEEEEEeeCCCCC-------CCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEe
Q psy9378 424 PGRYYVASAFTLATLIHSKRDILGANS-------SVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSP 496 (522)
Q Consensus 424 PGR~lva~ag~Lvt~V~~~K~~~~~~~-------g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 496 (522)
||||+|++||+|+|+|+++|+..+... +...+++|++|+|+|++|++.+|++.+..|.+.+...+++..++++
T Consensus 275 PGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ly~~~~~~p~~~~~~~~~~~~~~~~ 354 (424)
T 7odc_A 275 PGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSS 354 (424)
T ss_dssp CSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTTTHHHHHSCCCCCCEESSCCCTTCCEEEEE
T ss_pred CCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEEEeCCcCCChhhHhhccCccceeeecCCCCCCCeeeEE
Confidence 999999999999999999998753110 1122578999999999999999999887787765444445678999
Q ss_pred eecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 497 LFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 497 l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
|+||+|+++|+++. ||+|+|...|||
T Consensus 355 v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY 389 (424)
T 7odc_A 355 IWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAY 389 (424)
T ss_dssp EECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSS
T ss_pred EECCCCCCCCEecccccCCCCCCCCEEEECCCCCC
Confidence 99999999997763 799999888888
No 2
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=1.2e-55 Score=472.71 Aligned_cols=322 Identities=23% Similarity=0.231 Sum_probs=281.6
Q ss_pred ceEEecCCCCCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCC--CeEEeeecCCCcHHHHHHHHHcCCeEE
Q psy9378 184 SLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPR--VDPYYAVKCNDSQMVLEVLAALGTGFD 261 (522)
Q Consensus 184 ~~~~~~~~~~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~--~~i~YAvKAN~~~~Vlk~L~~~G~GfD 261 (522)
++...+|.+.++|+++.+|+ ++++||+||||++.|++|+++|++++++ ++++||+|||+++.|++++.+.|+|||
T Consensus 25 ~~~~~~~~l~~~~~~l~~la---~~~~tP~~vid~~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~d 101 (443)
T 3vab_A 25 HFEYRNGVLHAENVSLPEIA---KAVGTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQAVLTALAKLGAGAD 101 (443)
T ss_dssp SEEEETTEEEETTEEHHHHH---HHHCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEE
T ss_pred cceeeCCEEEECCeeHHHHH---hhcCCCEEEEEHHHHHHHHHHHHHhhccCCcEEEEEeccCCCHHHHHHHHHcCCcEE
Confidence 45555777889999999998 5678999999999999999999999985 899999999999999999999999999
Q ss_pred EEc-----------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCc---
Q psy9378 262 CAS-----------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEV--- 311 (522)
Q Consensus 262 vaS-----------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~--- 311 (522)
|+| |++++|+.|+++|+..++|||++||++|.+.++ .++|+||||++.+.
T Consensus 102 vaS~~E~~~~~~~G~~~~~I~~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRVn~~~~~~~~ 181 (443)
T 3vab_A 102 TVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKTH 181 (443)
T ss_dssp ESSHHHHHHHHHTTCCGGGEEEECTTCCHHHHHHHHHHTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEECCBCTTTC
T ss_pred EeCHHHHHHHHHcCCChhhEEEcCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCC
Confidence 999 899999999999997799999999999988753 47999999987432
Q ss_pred ---ccCCCCCccccCcCCCHHHHHHHHhhC-CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 312 ---AQCQLGMKFGCDPISEAPRLLRLAKSL-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 312 ---~~~~~~sKFGi~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
.++...+|||++++ ++.++++.+++. ++++.|||||+||++.+.+.|.++++++.++++.+++.|+++++||+||
T Consensus 182 ~~i~tG~~~sRfGi~~~-e~~~ll~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~G~~l~~ldiGG 260 (443)
T 3vab_A 182 AKISTGKSENKFGIPRD-KARAAYARAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGG 260 (443)
T ss_dssp CBC---CCCCSSSEEGG-GHHHHHHHHHHSTTEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCCEEECCC
T ss_pred cccccCCCCCCCcCCHH-HHHHHHHHHhhCCCceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCC
Confidence 23345699999998 999999998875 7999999999999999999999999999999998888899999999999
Q ss_pred CCCCCCC------CCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEc
Q psy9378 388 GYPGYTG------YSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYIN 461 (522)
Q Consensus 388 Gf~~~~~------~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd 461 (522)
||+++|. +++++|++.|++.++++ +++|++|||||+|++||+|+|+|+++|+..+ +.|+++|
T Consensus 261 G~~i~y~~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~-------~~~~~vD 328 (443)
T 3vab_A 261 GLGIPYRTPNTPPPPPVAYAQIVAKHIKPL-----GLKTVFEPGRLIVGNAGLLVTEVIFVKEGDA-------KNFVIVD 328 (443)
T ss_dssp CBCCCCCCC---CCCHHHHHHHHHHHHGGG-----CSEEEECCSHHHHGGGEEEEEEEEEEEECSS-------CEEEEES
T ss_pred CcccCcCCCCCCCCCHHHHHHHHHHHHHhc-----CCEEEEecCHHHhhcccEEEEEEEEEEecCC-------eeEEEEc
Confidence 9998652 47999999999999864 4799999999999999999999999998765 6899999
Q ss_pred CCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 462 DGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 462 ~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
+||++.++|.+|+++|.+..+.+ ....+...+++|+||+|+++|+++. ||+|+|..-|||
T Consensus 329 ~gm~~~~rp~ly~~~~~~~~~~~-~~~~~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY 397 (443)
T 3vab_A 329 AAMNDLIRPTLYDAFHDIRPVIM-PNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGDLIAICTTGAY 397 (443)
T ss_dssp CCTTTCCHHHHHCCCCCEEESBC-CCTTSCEEEEEEECSSSSTTCEEEEEEEEECCCTTCEEEEESCTTT
T ss_pred cccccccchHHhCccceeEEccc-CCCCCCceEEEEEccCCCCCCEEeeccCcCCCCCCCEEEEeCCCcC
Confidence 99999999999998765432222 1123456889999999999997664 799999888888
No 3
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=2.9e-55 Score=469.37 Aligned_cols=321 Identities=23% Similarity=0.206 Sum_probs=272.8
Q ss_pred ceEEe-cCCCCCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCC--CeEEeeecCCCcHHHHHHHHHcCCeE
Q psy9378 184 SLMVY-PRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPR--VDPYYAVKCNDSQMVLEVLAALGTGF 260 (522)
Q Consensus 184 ~~~~~-~~~~~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~--~~i~YAvKAN~~~~Vlk~L~~~G~Gf 260 (522)
++... +|.+.++|+++.+|+ ++++||+|+||++.|++|+++|++++++ ++++||+|||+++.|++++.+.|+||
T Consensus 27 ~~~~~~~~~l~~~~~~l~~la---~~~~TP~~vidl~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~ 103 (441)
T 3n2b_A 27 YFNYQEDGQLWAEQVPLADLA---NQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGF 103 (441)
T ss_dssp SEEECTTSSEEETTEEHHHHH---HHHCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEE
T ss_pred ccCcccCCEEEECCccHHHHH---hhcCCCEEEEEHHHHHHHHHHHHHhhccCCcEEEEEeccCCCHHHHHHHHHcCCcE
Confidence 34444 566778999999998 5679999999999999999999999985 79999999999999999999999999
Q ss_pred EEEc-----------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcc-
Q psy9378 261 DCAS-----------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVA- 312 (522)
Q Consensus 261 DvaS-----------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~- 312 (522)
||+| |++++|+.|+++|+..++|||++||++|.+.+ +.++|+||||++.+..
T Consensus 104 dvaS~~E~~~~~~~G~~~~~I~~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRvn~~~~~~~ 183 (441)
T 3n2b_A 104 DIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKT 183 (441)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTT
T ss_pred EEeCHHHHHHHHHcCCCcccEEEcCCCCCHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHhcCCCcEEEEEeccCCCcCC
Confidence 9999 88999999999999779999999999998864 5689999999975321
Q ss_pred -----cCCCCCccccCcCCCHHHHHHHHhh-CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEc
Q psy9378 313 -----QCQLGMKFGCDPISEAPRLLRLAKS-LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLG 386 (522)
Q Consensus 313 -----~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIG 386 (522)
++...+|||++++ ++.++++.+++ .++++.|||||+||++.+++.|.++++++.++++.+++.|+++++||+|
T Consensus 184 ~~~i~tG~~~sKfG~~~~-~~~~~~~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~G~~l~~LdiG 262 (441)
T 3n2b_A 184 HPYISTGLRDNKFGITFD-RAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVG 262 (441)
T ss_dssp CHHHHHHHHTSSSSBCGG-GHHHHHHHHHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECC
T ss_pred CcccccCCCCCcccCCHH-HHHHHHHHHhcCCCeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEC
Confidence 2234699999998 99999999887 4999999999999999999999999999999999888899999999999
Q ss_pred CCCCCCC----CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcC
Q psy9378 387 GGYPGYT----GYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYIND 462 (522)
Q Consensus 387 GGf~~~~----~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~ 462 (522)
|||+++| ..++++|++.|++.+++++ +++|++|||||+|++||+|+|+|+++|+..+ +.|+++|+
T Consensus 263 GG~gi~y~~~~~~~~~~~~~~i~~~l~~~~----~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~-------~~~~~vD~ 331 (441)
T 3n2b_A 263 GGLGVVYRDELPPQPSEYAKALLDRLERHR----DLELIFEPGRAIAANAGVLVTKVEFLKHTEH-------KNFAIIDA 331 (441)
T ss_dssp SCCCEEC-----CEECHHHHHHHHHHTTTC----CSEEEECCSHHHHGGGEEEEEEEEEEEEC---------CEEEEESC
T ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHhcc----CCEEEEeCCHHHHhhccEEEEEEEEEEecCC-------ceEEEEcc
Confidence 9999765 2468899999999987752 5899999999999999999999999998765 68999999
Q ss_pred CCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc--------cCcEEEEeccccC
Q psy9378 463 GVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS--------LFFCVLWLCGQVY 522 (522)
Q Consensus 463 G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~--------~~~~~~~~~~~~~ 522 (522)
||++.++|.+|++++.+..+. . ..+...+++|+||+|+++|+++ .||+|+|..-|||
T Consensus 332 gm~~~~rp~ly~~~~~~~~~~-~--~~~~~~~~~v~Gp~C~s~D~l~~~~~l~l~~GD~l~~~~~GAY 396 (441)
T 3n2b_A 332 AMNDLIRPALYQAWQDIIPLR-P--RQGEAQTYDLVGPVCETSDFLGKDRDLVLQEGDLLAVRSSGAY 396 (441)
T ss_dssp CTTTCCC-------CCEEESS-C--CSSCCEEEEEECSSSSTTCEEEEEEEECCCTTCEEEESSCSSS
T ss_pred ccccccchHHhCcccceEEcc-C--CCCCceeEEEECCcCCCCCEEeeccccCCCCCCEEEEeCCCcC
Confidence 999999999999876532222 1 2345688999999999999765 4899999888887
No 4
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.5e-52 Score=451.80 Aligned_cols=314 Identities=50% Similarity=0.840 Sum_probs=278.7
Q ss_pred CCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------
Q psy9378 208 MKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----------------------- 264 (522)
Q Consensus 208 ~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----------------------- 264 (522)
..+||+|+||++.|++|+++|++++++++++||+|||+++.|++++.++|.||||+|
T Consensus 45 ~~~tP~~viDl~~l~~n~~~l~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~E~~~~~~aG~~~~~iv~~g~~ 124 (471)
T 2oo0_A 45 DDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPC 124 (471)
T ss_dssp SCCCCEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred CCCCcEEEEEHHHHHHHHHHHHHhCCCCeEEEEEeeCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCChhhEEEeCCC
Confidence 478999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEE
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVG 344 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~G 344 (522)
|+++++++|+++|+..++|||++||++|.+.++.++|+||||++...+++...+|||++++ ++.++++.+++.++++.|
T Consensus 125 k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~V~lRvn~g~~~~~~~~~~RfG~~~~-~~~~~~~~~~~~~l~l~G 203 (471)
T 2oo0_A 125 KQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLR-TSRLLLERAKELNIDVVG 203 (471)
T ss_dssp CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEECCCCTTSSBCCTTTSCBCHH-HHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHhCCCcEEE
Confidence 8999999999999977999999999999999888999999999977777788899999998 899999988888999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCHHHHHHHHHHHHHhhCCCCCCcEEEe
Q psy9378 345 VSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSMNRIAEIINVALDEYFPVEEGVSIIA 422 (522)
Q Consensus 345 lhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~~~~a~~I~~~l~~~~~~~~~~~li~ 422 (522)
||||+||++.+.+.|.++++++.++++.+++.|+++++||+||||++.+ ..+++++++.|+..++++++...+++|++
T Consensus 204 lh~H~gs~~~~~~~~~~a~~~~~~~~~~~~~~G~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~li~ 283 (471)
T 2oo0_A 204 VSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIA 283 (471)
T ss_dssp EEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCSSSSSSSCHHHHHHHHHHHHHHHSCGGGTCEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhcccCCcEEEe
Confidence 9999999999999999999999999999999999999999999998754 46799999999999999987334689999
Q ss_pred cCcceeeccceeEEEEEEEEEeeCCCC---CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEE
Q psy9378 423 EPGRYYVASAFTLATLIHSKRDILGAN---SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRS 495 (522)
Q Consensus 423 EPGR~lva~ag~Lvt~V~~~K~~~~~~---~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~ 495 (522)
|||||++++||+|+++|+++|+..... ++ .....++++++|+++++++.||+++|++|++.+...+.+...++
T Consensus 284 EpGR~~v~~ag~l~t~V~~vK~~~~~~v~y~~~~~~~~~~~~~~i~~G~~~~~~~~L~~~~~~~~vl~~~~~~~~~~~~~ 363 (471)
T 2oo0_A 284 EPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSS 363 (471)
T ss_dssp CCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTGGGHHHHSCCCCCCEESSCCCTTCCEEEE
T ss_pred cCccceecCcEEEEEEEEEEEecCccccccccccccCCceEEEEEECCcccchhhHhhccCcceeeeccCCCCCCCeeEE
Confidence 999999999999999999999875210 00 11245777999999999999999988877776543333445789
Q ss_pred eeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 496 PLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 496 ~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
+|+||+|+++|.+. .||+|+|...|||
T Consensus 364 ~I~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY 399 (471)
T 2oo0_A 364 SIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAY 399 (471)
T ss_dssp EEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSS
T ss_pred EEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcc
Confidence 99999999999765 4899999888888
No 5
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00 E-value=2.6e-52 Score=447.41 Aligned_cols=312 Identities=38% Similarity=0.677 Sum_probs=262.8
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------C
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------K 265 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K 265 (522)
.+||+|+||+++|++|+++|++++++++++||+|||+++.|++++.+.|+||||+| |
T Consensus 36 ~~tP~~vid~~~l~~n~~~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~~vaS~~E~~~~~~aG~~~~~iv~~g~~k 115 (448)
T 3btn_A 36 GKNAFFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPCK 115 (448)
T ss_dssp SCCCEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEEESSHHHHHHHHHTTCCGGGEEECCSSC
T ss_pred CCCCEEEEeHHHHHHHHHHHHHhCCCCeEEEEeeeCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCChhhEEEcCCCC
Confidence 79999999999999999999999999999999999999999999999999999999 8
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEE
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGV 345 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Gl 345 (522)
+++++++|+++|+..++|||++||++|.+.++.++|+||||++.+.+++...+|||++++ ++.++++.+++.++++.||
T Consensus 116 ~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRin~g~~~~~~~~~~RfG~~~~-~~~~~~~~~~~~~l~~~Gl 194 (448)
T 3btn_A 116 QVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATEDNIGGEDGNMKFGTTLK-NCRHLLECAKELDVQIIGV 194 (448)
T ss_dssp CHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCC--------CCCCBCHH-HHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHcCCCEEEeCCHHHHHHHHHhCCCCeEEEEEecCCCccCCCCCCcCCCCHH-HHHHHHHHHHhCCCCEEEE
Confidence 999999999999977999999999999999888999999999977667777899999998 8999999887779999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 346 SFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 346 hfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
|||+||++.+.+.|.++++++.++++.+++.|+++++||+||||++.+ .+++++++.|++.++++++...++++++|||
T Consensus 195 ~~H~gs~~~d~~~~~~~~~~~~~~~~~~~~~G~~~~~ldiGGG~~~~~-~~~~~~~~~v~~~i~~~~p~~~~~~l~~EpG 273 (448)
T 3btn_A 195 KFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTE-IQLEEVNHVISPLLDIYFPEGSGIQIISEPG 273 (448)
T ss_dssp ECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCSCH-HHHHHHHHHHHHHHHHHSCTTSCCEEEECCS
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcCCCC-CCHHHHHHHHHHHHHHHhcccCCcEEEEeCC
Confidence 999999998899999999999999998899999999999999997654 4689999999999999987434689999999
Q ss_pred ceeeccceeEEEEEEEEEeeCCCC----C---CC-CceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEee
Q psy9378 426 RYYVASAFTLATLIHSKRDILGAN----S---SV-PTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPL 497 (522)
Q Consensus 426 R~lva~ag~Lvt~V~~~K~~~~~~----~---g~-~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l 497 (522)
|+++++||+|+|+|+++|+..... + +. ....+|++++|+++++++.+|++++++|++++...+.+...+++|
T Consensus 274 R~~v~~ag~l~t~V~~vK~~~~g~~vsyg~~~~~~~~~~~~~i~~G~~d~~~~~l~~~~~~~~vl~~~~~~~~~~~~~~v 353 (448)
T 3btn_A 274 SYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSL 353 (448)
T ss_dssp HHHHTTTEEEEEEEEEEEEC-----------------CEEEEESCCTTTTTGGGGC----CCCEECCC-----CEEEEEE
T ss_pred cceeeeeEEEEEEEEEEEecccccccccccccccCCceEEEEEccccccccchhhhccCcceeeeccCCCCCCCceEEEE
Confidence 999999999999999999865210 0 00 123468899999999999999998877777654323334578999
Q ss_pred ecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 498 FLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 498 ~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
+||+|+++|.+. .||+|+|...|+|
T Consensus 354 ~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY 387 (448)
T 3btn_A 354 WGPSCDELDQIVESCLLPELNVGDWLIFDNMGAD 387 (448)
T ss_dssp ECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSS
T ss_pred ECCCCCCCCEEeeccccCCCCCCCEEEEcCCCCC
Confidence 999999999765 4899999888887
No 6
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00 E-value=2.7e-51 Score=436.70 Aligned_cols=327 Identities=47% Similarity=0.776 Sum_probs=273.1
Q ss_pred CCccccCCccc-----cCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----
Q psy9378 195 TQVPVYNYPDN-----VGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----- 264 (522)
Q Consensus 195 ~g~~l~~l~~~-----~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----- 264 (522)
+++++.++.+. ..+++||+|+||+++|++|+++|++.+++++++||+|||+++.|++.+.+.|.||+|+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~tP~~vidl~~l~~n~~~~~~~~~~~~~~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~ 96 (425)
T 1f3t_A 17 EGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQ 96 (425)
T ss_dssp CCSSHHHHHHHHCC------CCCEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHH
T ss_pred cCCcHHHHHHHHHHhcccCCCCcEEEEeHHHHHHHHHHHHHhCCCCeEEEEeeeCCCHHHHHHHHHcCCcEEEeCHHHHH
Confidence 45555544433 23479999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCC
Q psy9378 265 ------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPIS 326 (522)
Q Consensus 265 ------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~ 326 (522)
|++++++.|+++|+..++|||++||++|.+.+++++|+||||++...+++...+|||++++
T Consensus 97 ~~~~~G~~~~~iv~~g~~k~~~~l~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lrid~g~~~~~~~~~~RfG~~~~- 175 (425)
T 1f3t_A 97 RVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLARCRLSVKFGAKVE- 175 (425)
T ss_dssp HHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC----------CCSCBCHH-
T ss_pred HHHHcCCChhhEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCcEEEEEcCCCCCccCCCCCcCCCCHH-
Confidence 8899999999999966999999999999999888999999999876667777899999998
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCHHHHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSMNRIAEII 404 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~~~~a~~I 404 (522)
++.++++.+++.++++.|+|||+||++.+.+.|.++++++.++++.+++.|+++++||+||||++.+ ..+++++++.|
T Consensus 176 ~~~~~~~~~~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~l~iGGG~~~~~~~~~~~~~~~~~v 255 (425)
T 1f3t_A 176 DCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVI 255 (425)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCCCSSTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcCCCCCCCCCHHHHHHHH
Confidence 8999999888789999999999999999999999999999899998899999999999999998754 35799999999
Q ss_pred HHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCC---CC----CCceEEEEEcCCCcCcchhhhcccCc
Q psy9378 405 NVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN---SS----VPTHTMYYINDGVYGSFNCIIYDHAV 477 (522)
Q Consensus 405 ~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~---~g----~~~~~~~~vd~G~~~~~~~~l~~~~~ 477 (522)
+..+++|++...++++++||||+++++||+|+|+|+++|+..... +| ....++|++++|+++++++.||++.+
T Consensus 256 r~~i~~~~~~~~~~~l~~EpGR~~v~~a~~l~t~V~~vK~~~~g~~~v~g~~~~~~~~~~~~i~~G~~d~~~~~l~~~~~ 335 (425)
T 1f3t_A 256 NNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAV 335 (425)
T ss_dssp HHHHHHHSCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEEESCCTTTGGGHHHHSCCC
T ss_pred HHHHHHhcCcCCCcEEEEeCCceeeeeeEEEEEEEEEEEeccccccccccccccCcceEEEEEeccccccchhhhhcccc
Confidence 999999987445689999999999999999999999999864310 00 01246788999999999999999988
Q ss_pred cccccCCCCCCCCcceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 478 CTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 478 ~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
+.|++++...+.+...+++|+||+|+++|.+. .||+|+|...|+|
T Consensus 336 ~~~vl~~~~~~~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY 389 (425)
T 1f3t_A 336 VRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAY 389 (425)
T ss_dssp CCCEECSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSS
T ss_pred cceeeecCCCCCCCeeEEEEEcCCcCCCCEecccccCCCCCCCCEEEEcCCCCC
Confidence 77777664433344578999999999999654 4899999888887
No 7
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=100.00 E-value=4.1e-52 Score=434.90 Aligned_cols=283 Identities=15% Similarity=0.161 Sum_probs=238.6
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhC--CCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc---------------------C
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKL--PRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS---------------------K 265 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~l--p~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS---------------------K 265 (522)
++|||||||++.|++|+++|++++ ++++++||+|||+++.|+++|++.|+||||+| |
T Consensus 2 ~gtP~yv~d~~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~E~~~~~~~~~~~ii~~~~~k 81 (365)
T 3mt1_A 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERFGKETHAYSVAY 81 (365)
T ss_dssp CCSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHTTTSCEEEESSHHHHHHHHHHTCSEEEEEESCC
T ss_pred CCCCEEEEeHHHHHHHHHHHHHHHhhcCCEEEEEehhcCCHHHHHHHHHhCCeEEECCHHHHHHHHhhCCCceEEECCCC
Confidence 589999999999999999999999 48999999999999999999999999999999 8
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCc------ccCCCCCccccCcCCCHHHHHHHHhhCC
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEV------AQCQLGMKFGCDPISEAPRLLRLAKSLD 339 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~------~~~~~~sKFGi~~e~e~~~ll~~~k~~~ 339 (522)
++++|++|++.|+ .+++||++||++|.+++++++++||||++... .++...+|||++++ ++.+. .
T Consensus 82 ~~~el~~a~~~g~-~i~vds~~el~~l~~~a~~~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~~~-~~~~~-------~ 152 (365)
T 3mt1_A 82 GDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDV-PKVER-------V 152 (365)
T ss_dssp CTTTHHHHHHHCS-EEEESSHHHHHHHGGGGTTSEEEEEECCC----------------CCSBCCH-HHHHT-------T
T ss_pred CHHHHHHHHHcCC-EEEECCHHHHHHHHHHhccCCEEEEEecCCCCCCCccccCCCCCCcCCCCHH-HHhhh-------c
Confidence 8899999999998 59999999999999999999999999997542 24445699999997 76552 3
Q ss_pred C-eEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-CCCHHHHHHHHHHHHHhhCCCCCC
Q psy9378 340 L-DVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-GYSMNRIAEIINVALDEYFPVEEG 417 (522)
Q Consensus 340 L-~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-~~~~~~~a~~I~~~l~~~~~~~~~ 417 (522)
+ ++.|||||+|||+.+++.|.++++.+.++++. .|+++++|||||||+++| +.++++|++.|++.++++ +
T Consensus 153 l~~~~Glh~HigSq~~~~~~~~~~~~~~~~~~~~---~g~~~~~ldiGGG~~i~y~~~~~~~~~~~i~~~~~~~-----~ 224 (365)
T 3mt1_A 153 MDRINGFMIHNNCENKDFGLFDRMLGEIEERFGA---LIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRY-----G 224 (365)
T ss_dssp GGGCSEEEECCC--CCSHHHHHHHHHHHHHHHHH---HHTTSSEEECCSCCCTTSTTCCHHHHHHHHHHHHHHH-----T
T ss_pred cCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---hCCCCCEEEeCCCcCCCCCCCCHHHHHHHHHHHHHHh-----C
Confidence 4 78999999999999999999999888776543 478999999999999886 468999999999999876 4
Q ss_pred cEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEee
Q psy9378 418 VSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPL 497 (522)
Q Consensus 418 ~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l 497 (522)
++|++|||||+|++||+|+|+|+++|+. + ++|+++|+|+|+++.+.+.. .+.|.+. +++...+++|
T Consensus 225 ~~l~~EPGR~lv~~ag~lv~~V~~~k~~-~-------~~~~~vD~g~~~~~~~~~~~--~~~p~l~----~~~~~~~~~v 290 (365)
T 3mt1_A 225 VQIYLEPGEASITKSTTLEVTVLDTLYN-G-------KNLAIVDSSIEAHMLDLLIY--RETAKVL----PNEGSHSYMI 290 (365)
T ss_dssp CEEEECCSHHHHTTSEEEEEEEEEEEES-S-------SEEEEESCCHHHHCHHHHHT--TCCCCCS----SCCSSEEEEE
T ss_pred cEEEEeCchHhhccceEEEEEEEEEEEC-C-------cEEEEEcCccccCChHHhcC--CcCceec----cCCCceEEEE
Confidence 7999999999999999999999999986 4 68999999998877766532 3345544 1345688999
Q ss_pred ecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 498 FLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 498 ~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
+||+|+++|+++ .||+|+|...|||
T Consensus 291 ~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY 324 (365)
T 3mt1_A 291 CGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGY 324 (365)
T ss_dssp ECSSCCSSCEEEEEEESSCCCTTCEEEESSCCTT
T ss_pred EeCCCCccCEEcccccCCCCCCCCEEEEecccch
Confidence 999999999665 3799999888888
No 8
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.3e-51 Score=438.20 Aligned_cols=288 Identities=14% Similarity=0.162 Sum_probs=243.9
Q ss_pred cCCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-------------------
Q psy9378 206 VGMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------------------- 264 (522)
Q Consensus 206 ~~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS------------------- 264 (522)
+++++|||||||++.|++|+++|+++++ +++++||+|||+++.|+++|++.|+||||+|
T Consensus 39 ~~~~~TP~yv~d~~~l~~n~~~l~~~~~~~~~~i~yAvKAN~~~~vl~~l~~~G~G~dvaS~~El~~a~~~~~~~Ii~~~ 118 (418)
T 3n29_A 39 YEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYS 118 (418)
T ss_dssp CTTCCSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHHHHSCEEEESSHHHHHHHHHHTCSEEEEEE
T ss_pred HhhCCCCEEEEeHHHHHHHHHHHHHhhhhcCCEEEEEEccCCCHHHHHHHHHcCCeEEECCHHHHHHHHhhCCCCEEEEC
Confidence 4889999999999999999999999996 8999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCc------ccCCCCCccccCcCCCHHHHHHHHh
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEV------AQCQLGMKFGCDPISEAPRLLRLAK 336 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~------~~~~~~sKFGi~~e~e~~~ll~~~k 336 (522)
|++++|++|++.|+ .++|||++||++|.+++++++|+|||||+.+. .++...+|||++++ ++.+.
T Consensus 119 ~~k~~~el~~A~~~g~-~i~vds~~EL~~l~~~a~~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~~~-~~~~~----- 191 (418)
T 3n29_A 119 PAFKEDEIGEIASLSH-HIVFNSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAK-DFENV----- 191 (418)
T ss_dssp SSCCHHHHHHHHHHCS-EEEESSHHHHHHHGGGCTTSEEEEEBCCCCC----------CTTCCSSBCGG-GGTTC-----
T ss_pred CCCCHHHHHHHHHcCC-eEEECCHHHHHHHHHhcCCCCEEEEEeCCCCCCCCcccccCCCCCcCcCCHH-HHHHh-----
Confidence 89999999999999 59999999999999999999999999998642 24556799999998 76542
Q ss_pred hCCC-eEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-CCCHHHHHHHHHHHHHhhCCC
Q psy9378 337 SLDL-DVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-GYSMNRIAEIINVALDEYFPV 414 (522)
Q Consensus 337 ~~~L-~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-~~~~~~~a~~I~~~l~~~~~~ 414 (522)
.+ ++.|||||+||| .+++.|.++++.+.+++ .+.|+++++|||||||++.| +.+++++++.|++.++++
T Consensus 192 --~l~~l~Glh~HigSq-~~~~~~~~~~~~~~~~~---~~~g~~l~~ldiGGGf~i~y~~~~~~~~~~~i~~~~~~~--- 262 (418)
T 3n29_A 192 --DLNAIEGLHFHALCE-ESADALEAVLKVFEEKF---GKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKY--- 262 (418)
T ss_dssp --CCTTCCEEECCCCSS-BCHHHHHHHHHHHHHHH---GGGTTTCSEEECCSCBCTTSTTCCHHHHHHHHHHHHHHH---
T ss_pred --hcCceEEEEEecCCC-CCHHHHHHHHHHHHHHH---HHhCCCCCEEEeCCCcCCCCCCCCHHHHHHHHHHHHHHc---
Confidence 44 789999999999 79999999888776543 45788999999999999876 468999999999999876
Q ss_pred CCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcc--------hhhhcccCc----ccccc
Q psy9378 415 EEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSF--------NCIIYDHAV----CTPIP 482 (522)
Q Consensus 415 ~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~--------~~~l~~~~~----~~p~~ 482 (522)
+++|++|||||+|++||+|+|+|+++|+. + +.|+++|+|+|+.+ +|.+|+..+ .+..+
T Consensus 263 --~~~ii~EPGR~lva~ag~lv~~V~~~K~~-~-------~~~~~vD~g~~~~m~d~~~~~~rp~l~~a~~~~~h~~~~~ 332 (418)
T 3n29_A 263 --GVQVYLEPGEAVGWQTGNLVASVVDIIEN-E-------KQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKI 332 (418)
T ss_dssp --TCEEEECCSHHHHTTSEEEEEEEEEEEES-S-------SEEEEESSCHHHHSHHHHHTTCCCCBTTEEEEECTTCCBC
T ss_pred --CCEEEEeCCHHhhhhcEEEEEEEEEEEeC-C-------CEEEEECCcccccchhhhccCcCceeeccccccccccccc
Confidence 47999999999999999999999999986 4 68999999976555 455555421 11111
Q ss_pred CCCCCCCCcceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 483 FNVMDDSQVSLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 483 ~~~~~~~~~~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
..+.+...+++|+||+|+++|+++ .||+|+|...|||
T Consensus 333 ---~~~~~~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY 378 (418)
T 3n29_A 333 ---SDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHY 378 (418)
T ss_dssp ---CCCCTTCEEEEEECSSSCTTCEEEEEEESSCCCTTCEEEESSCSSS
T ss_pred ---cCCCCCceEEEEEcCCCCCCCEEeecccCCCCCCCCEEEEeCccch
Confidence 112345688999999999999664 4799999888888
No 9
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00 E-value=1.7e-49 Score=415.30 Aligned_cols=314 Identities=34% Similarity=0.607 Sum_probs=274.9
Q ss_pred cCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc---------------
Q psy9378 200 YNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS--------------- 264 (522)
Q Consensus 200 ~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS--------------- 264 (522)
.+|++....++||+|++|+++|++|+++|++.+++++++|++|||+++.|++.+.+.|+||+|+|
T Consensus 6 ~~l~~~~~~~~tP~~vidl~~l~~N~~~l~~~~~~~~~~~~vKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~~~ 85 (372)
T 2nva_A 6 NNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPS 85 (372)
T ss_dssp HHHHHHCTTCCSEEEEECHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHTCCGG
T ss_pred HHHHHhcCCCCCCEEEEeHHHHHHHHHHHHHhCCCCeEEEEeeeCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCCHH
Confidence 34444434589999999999999999999999999999999999999999999999999999999
Q ss_pred --------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHh
Q psy9378 265 --------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAK 336 (522)
Q Consensus 265 --------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k 336 (522)
|++++++.|+++|+..+++||++||++|.+.+++.+++|||+++...+++..++|||++++ ++.++++.++
T Consensus 86 ~I~~~~~~k~~~~l~~a~~~~v~~~~vds~~~l~~l~~~~~~~~v~lrv~~~~~~~~~~~~~R~G~~~~-~~~~~~~~~~ 164 (372)
T 2nva_A 86 RIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRCDDPNATVQLGNKFGANED-EIRHLLEYAK 164 (372)
T ss_dssp GEEECCSCCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCCTTCSBCCTTTSSBCGG-GHHHHHHHHH
T ss_pred HEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEEecCCCCCcccCCCCCCCCHH-HHHHHHHHHH
Confidence 8899999999999976899999999999999888999999999876666667799999998 9999999888
Q ss_pred hCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCHHHHHHHHHHHHHhhCCC
Q psy9378 337 SLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSMNRIAEIINVALDEYFPV 414 (522)
Q Consensus 337 ~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~~~~a~~I~~~l~~~~~~ 414 (522)
+.++++.|+|+|+||++.+++.+.++++++.++++.+++.|++++++|+||||++.+ ..+++.+++.++..+..|++.
T Consensus 165 ~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~GGg~~~~~~~~~~~~~~~~~vr~~i~~y~~~ 244 (372)
T 2nva_A 165 QLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPE 244 (372)
T ss_dssp HTTCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCBCCCCC---CCCHHHHHHHHHHHHHCCC
T ss_pred HcCCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCCCcCCCCCCCHHHHHHHHHHHHHHhcCc
Confidence 779999999999999998888999999999999988888899999999999998865 234788999999999999762
Q ss_pred CCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceE
Q psy9378 415 EEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLR 494 (522)
Q Consensus 415 ~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~ 494 (522)
..+++++||||++++++|+++|+|+++|+..+ ++++++|+|+++++++.+|+..++.|++.......+...+
T Consensus 245 -~~~~~~~epGr~~~~~a~~l~t~V~~vk~~~g-------~~~~~vd~G~~d~~~~~l~~~~~~~~v~~~~~~~~g~~~~ 316 (372)
T 2nva_A 245 -DTVTIVAEPGRFFAEHYSVLATQVIGKRVRDG-------LYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVP 316 (372)
T ss_dssp -TTCEEEECCSHHHHGGGEEEEEEEEEEEEETT-------EEEEEESCCTTTTCTHHHHSCCCCCCEESSCCCTTCCEEE
T ss_pred -CCCEEEEccChhHhhceEEEEEEEEEEEEeCC-------cEEEEECCCccccchHhhhcccCccceeccCccCCCCcce
Confidence 24799999999999999999999999999865 6899999999999999999876654666543222233478
Q ss_pred EeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 495 SPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 495 ~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
++|+||+|+++|.+. .||.|++..-|+|
T Consensus 317 ~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY 353 (372)
T 2nva_A 317 SVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAY 353 (372)
T ss_dssp EEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCCSS
T ss_pred EEEEeCCcCCCCEEcccccCCCCCCCCEEEEcCCCCC
Confidence 999999999999654 4899999777777
No 10
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=100.00 E-value=1.5e-49 Score=428.06 Aligned_cols=337 Identities=15% Similarity=0.181 Sum_probs=280.3
Q ss_pred cccccCCcceEEe-cCCCCCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhC-CCCeEEeeecCCCcHHHHHHH
Q psy9378 176 SVWKRIPKSLMVY-PRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKL-PRVDPYYAVKCNDSQMVLEVL 253 (522)
Q Consensus 176 ~~~~~~~~~~~~~-~~~~~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~l-p~~~i~YAvKAN~~~~Vlk~L 253 (522)
++|- ..+.+. +|.+.++++++.+|+ ++++||+|+||++.|++|+++|++++ ++++++||+|||+++.|++++
T Consensus 12 ~~w~---~~~~~~~~~~l~~~~~~l~~l~---~~~~tP~~vid~~~l~~n~~~l~~~~~~~~~i~~avKan~~~~v~~~l 85 (467)
T 2o0t_A 12 NVWP---RNTTRDEVGVVCIAGIPLTQLA---QEYGTPLFVIDEDDFRSRCRETAAAFGSGANVHYAAKAFLCSEVARWI 85 (467)
T ss_dssp TTSC---TTEEECSSSCEEETTEEHHHHH---HHHCSSEEEEEHHHHHHHHHHHHHHTSSGGGBEEEGGGCCCHHHHHHH
T ss_pred ccCC---cceEEcCCCeEEECCccHHHHH---hhcCCCEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeccCCCHHHHHHH
Confidence 5666 333332 455667889999987 56789999999999999999999999 589999999999999999999
Q ss_pred HHcCCeEEEEc-----------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEe
Q psy9378 254 AALGTGFDCAS-----------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIR 306 (522)
Q Consensus 254 ~~~G~GfDvaS-----------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn 306 (522)
.+.|+||+|+| |++++++.|+++|+..++|||++||++|.+.++ .++|+||||
T Consensus 86 ~~~G~g~~vas~~E~~~~~~~G~~~~~I~~~g~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn 165 (467)
T 2o0t_A 86 SEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLT 165 (467)
T ss_dssp HHHTCEEEECSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHcCCeEEEeCHHHHHHHHHcCCCcccEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCCeEEEEEc
Confidence 99999999999 889999999999996699999999999988753 579999999
Q ss_pred eCCCc------ccCCCCCccccCcC-CCHHHHHHHHhh-CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHh-hcC
Q psy9378 307 CDAEV------AQCQLGMKFGCDPI-SEAPRLLRLAKS-LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGN-SLG 377 (522)
Q Consensus 307 ~~~~~------~~~~~~sKFGi~~e-~e~~~ll~~~k~-~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~-~~G 377 (522)
++.+. +++...+|||++++ +++.++++.+++ .+|++.|||||+||++.+.+.+.++++++.++++.++ +.|
T Consensus 166 ~g~~~~~~~~~~~~~~~srfG~~~~~~e~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G 245 (467)
T 2o0t_A 166 VGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFG 245 (467)
T ss_dssp CSEEEEETEEEEESSCCSSSSEETTTTHHHHHHHHHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccccCCCCCCcCCcCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 97321 34566899999872 278999998876 4999999999999999999999999999999988774 678
Q ss_pred ----CCccEEEEcCCCCCCC-----CCCHHHHHHHHHHHHHhhCCC-C-CCcEEEecCcceeeccceeEEEEEEEEEeeC
Q psy9378 378 ----FSMRVLDLGGGYPGYT-----GYSMNRIAEIINVALDEYFPV-E-EGVSIIAEPGRYYVASAFTLATLIHSKRDIL 446 (522)
Q Consensus 378 ----~~l~~LdIGGGf~~~~-----~~~~~~~a~~I~~~l~~~~~~-~-~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~ 446 (522)
+++++||+||||++.| ..+++++++.|+..++++++. + +.+++++|||||++++||+|+|+|+++|+..
T Consensus 246 ~~~~~~~~~ln~GGG~~i~y~~~~~~~~~~~~~~~v~~~i~~~~~~~g~~~~~l~~EpGR~~v~~ag~l~t~V~~vK~~~ 325 (467)
T 2o0t_A 246 PEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVD 325 (467)
T ss_dssp HHHSTTCCEEECCCCBCCCSSTTCCCCCHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEE
T ss_pred CCcccCCCEEEeCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEeccchheeccceEEEEEEEEEeecc
Confidence 8999999999998775 257999999999999876541 1 3579999999999999999999999999863
Q ss_pred CCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc----------cCcEEEE
Q psy9378 447 GANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS----------LFFCVLW 516 (522)
Q Consensus 447 ~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~----------~~~~~~~ 516 (522)
... ...+.|+++|+||++++++++|+..++.. +.+.. ......+++|+||+|+++|.+. .||+|+|
T Consensus 326 ~g~--~~~~~~~~vd~g~~~~~~p~~y~~~~~~~-~~~~~-~~~~~~~~~v~G~~C~s~D~~~~d~~lp~~l~~GD~l~~ 401 (467)
T 2o0t_A 326 VSA--TAHRRYVSVDGGMSDNIRTALYGAQYDVR-LVSRV-SDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAV 401 (467)
T ss_dssp CSS--SCEEEEEEESCCTTTCCHHHHHCCCCCEE-ECSSC-CCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEE
T ss_pred cCC--CCccEEEEEcCccccccchHHhCCcCceE-ecCCC-CCCCceeEEEECCCcCCCCEEEeccccCCCCCCCCEEEE
Confidence 210 01157889999999999999999765433 33322 2334578999999999999655 4899999
Q ss_pred eccccC
Q psy9378 517 LCGQVY 522 (522)
Q Consensus 517 ~~~~~~ 522 (522)
...|+|
T Consensus 402 ~~~GAY 407 (467)
T 2o0t_A 402 AATGAY 407 (467)
T ss_dssp SCCSSS
T ss_pred cCCCcc
Confidence 888887
No 11
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00 E-value=9.9e-49 Score=416.74 Aligned_cols=318 Identities=17% Similarity=0.184 Sum_probs=265.3
Q ss_pred CCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc--------
Q psy9378 194 MTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-------- 264 (522)
Q Consensus 194 ~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-------- 264 (522)
++|+++.+|+ ++++||+|+||++.|++|+++|+++++ +++++||+|||+++.|++++.+.|+||+|+|
T Consensus 3 ~~~~~~~~l~---~~~~tP~~vid~~~l~~n~~~l~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~ 79 (428)
T 2j66_A 3 LDQAEITALT---KRFETPFYLYDGDFIEAHYRQLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALAR 79 (428)
T ss_dssp -CHHHHHHHH---HHSCSSEEEEEHHHHHHHHHHHHHTSCTTEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHH
T ss_pred cCcccHHHHH---HhhCCCEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeeeCCCHHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 6778888887 678999999999999999999999998 8999999999999999999999999999999
Q ss_pred ---------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCc-----ccCCCCCcc
Q psy9378 265 ---------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEV-----AQCQLGMKF 320 (522)
Q Consensus 265 ---------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~-----~~~~~~sKF 320 (522)
|++++++.|+++|+..++|||++||++|.+.+ +..+|+||||++.+. .++...+||
T Consensus 80 ~~G~~~~~I~~~g~~k~~~~i~~a~~~~v~~~~vds~~el~~l~~~a~~~~~~~~V~lrvn~g~~~~~~~~~~~~~~srf 159 (428)
T 2j66_A 80 HAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFGSTAIKMGGVPRQF 159 (428)
T ss_dssp HTTCCGGGEEECCSCCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC--CCCSSSCCCCSS
T ss_pred HcCCCcCeEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCceEEEEEcCCCCCCCCccccCCCCCCC
Confidence 88999999999999669999999999998864 447999999998642 123446999
Q ss_pred ccCcCCCHHHHHHHHhhC-CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHH-hhcCCCccEEEEcCCCCCCC-----
Q psy9378 321 GCDPISEAPRLLRLAKSL-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLG-NSLGFSMRVLDLGGGYPGYT----- 393 (522)
Q Consensus 321 Gi~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~-~~~G~~l~~LdIGGGf~~~~----- 393 (522)
|++++ ++.++++.+++. ++++.|||+|+||+..+.+.+.++++++.++++.+ ++.|+++++||+||||++.|
T Consensus 160 G~~~~-e~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~l~~GGG~~i~y~~~~~ 238 (428)
T 2j66_A 160 GMDES-MLDAVMDAVRSLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEK 238 (428)
T ss_dssp SEEGG-GHHHHHHHHHHCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCCSEEECCCCBCCCCC--CC
T ss_pred CCCHH-HHHHHHHHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEeCCCcCcCCCCCCC
Confidence 99998 999999999875 99999999999999989999999999999988777 56799999999999998865
Q ss_pred CCCHHHHHHHHHHHHHhhCC-CCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhh
Q psy9378 394 GYSMNRIAEIINVALDEYFP-VEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCII 472 (522)
Q Consensus 394 ~~~~~~~a~~I~~~l~~~~~-~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l 472 (522)
.++++++++.|++.+..|+. ..+.+++++||||+++++||+|+|+|+++|+..+ +.++++|+|+++..++.+
T Consensus 239 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~EpGr~~~~~ag~l~t~V~~vK~~~g-------~~~~~~d~g~~~~~~~~~ 311 (428)
T 2j66_A 239 ALDIGKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG-------EVFVIVDGGMHHHAASTF 311 (428)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETT-------EEEEEESCCTTTCTTC--
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHhhceEEEEEEEEEEecCC-------cEEEEECCccccchhhhc
Confidence 35799999999999998753 2246899999999999999999999999999866 678889999999999987
Q ss_pred ----cccCccccccCCCC-CCCCcceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 473 ----YDHAVCTPIPFNVM-DDSQVSLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 473 ----~~~~~~~p~~~~~~-~~~~~~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
|+..+++..+.+.. .+.....+++|+||+|+++|.+. .||.|+|..-|+|
T Consensus 312 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~s~D~l~~d~~lp~~~~GD~l~~~~~GAY 375 (428)
T 2j66_A 312 RGRSMRSNYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAY 375 (428)
T ss_dssp ---------CEEEEC---------CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSS
T ss_pred cchhccCcCcEEeecccCCCCCCCCceEEEEcCCCCCCcEEEecccCCCCCCCCEEEEeCCCcc
Confidence 77665544432111 12334577999999999999654 4899999888887
No 12
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=100.00 E-value=2.3e-48 Score=413.46 Aligned_cols=313 Identities=29% Similarity=0.436 Sum_probs=268.7
Q ss_pred CCCCc-cccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-------
Q psy9378 193 DMTQV-PVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------- 264 (522)
Q Consensus 193 ~~~g~-~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS------- 264 (522)
.++++ ++.+|+ ++++||+|+||+++|++|+++|++.+++++++|++|||+++.|++.+.+.|.||+|+|
T Consensus 39 ~~~~~~~~~~l~---~~~~tP~~vidl~~l~~N~~~l~~~~~~~~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~~~ 115 (419)
T 2plj_A 39 SAEEIHLIEASV---EQFGAPLLLLDCDVIRQQYRALKNALPNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELV 115 (419)
T ss_dssp CHHHHHHHHHHH---HHHCSSEEEEEHHHHHHHHHHHHHHSTTEEEEEESTTCCCHHHHHHHHHHTCEEEECSHHHHHHH
T ss_pred eccChHHHHHHH---HhcCCCEEEEeHHHHHHHHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHH
Confidence 34452 556665 6679999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCH
Q psy9378 265 ----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEA 328 (522)
Q Consensus 265 ----------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~ 328 (522)
|++++++.|+++|+..++|||++||++|.+.+++.+|+||||++...+++...+|||++++ ++
T Consensus 116 r~~G~~~~~Il~~g~~k~~~~l~~a~~~~v~~~~vds~~el~~l~~~a~~~~v~lrvd~g~~~~~~~~~~RfG~~~~-e~ 194 (419)
T 2plj_A 116 ASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSFRNSEAFADLSKKFGCSPE-QA 194 (419)
T ss_dssp HHTTCCGGGEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTCEEEEEBCC---------CCCSCBCHH-HH
T ss_pred HHcCCChhhEEEeCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCCCCcCCHH-HH
Confidence 8899999999999977999999999999999888999999999865555556799999998 89
Q ss_pred HHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCC-CccEEEEcCCCCCCC---CCCHHHHHHHH
Q psy9378 329 PRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGF-SMRVLDLGGGYPGYT---GYSMNRIAEII 404 (522)
Q Consensus 329 ~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~-~l~~LdIGGGf~~~~---~~~~~~~a~~I 404 (522)
.++++.+++.++++.|||||+||++.+++.+.++++++.++++.+++.|+ +++++|+||||++.+ ..+++++++.+
T Consensus 195 ~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~l~~GGG~~~~y~~~~~~~~~~~~~v 274 (419)
T 2plj_A 195 LVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPI 274 (419)
T ss_dssp HHHHHHHHHTTCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCCCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCcCcCCCCCCCCHHHHHHHH
Confidence 99999888789999999999999998888999999999999988888899 999999999998876 35799999999
Q ss_pred HHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCC
Q psy9378 405 NVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFN 484 (522)
Q Consensus 405 ~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~ 484 (522)
+..+.. ++ ..+++++||||+++++||+++|+|+++|+..+ ++++++|+|+++++++.+|+..++ |++..
T Consensus 275 r~~i~~-y~--~~~~~~~EpGr~~~~~a~~l~t~V~~vk~~~g-------~~~~~vd~G~~d~~~~~l~~~~~~-~v~~~ 343 (419)
T 2plj_A 275 NEALSL-LP--ETVHVLAEPGRFICAPAVTSVASVMGQAEREG-------QIWYYLDDGIYGSFSGLMFDDARY-PLTTI 343 (419)
T ss_dssp HHHHTT-SC--TTCEEEECCCHHHHGGGEEEEEEEEEEEEETT-------EEEEEESCCTTTGGGHHHHSCCCC-CEEES
T ss_pred HHHHHh-CC--CCCEEEEcCCHHHhhhcEEEEEEEEEEEeECC-------eEEEEEcCccccchHHHHhccccc-eEEec
Confidence 999988 44 25799999999999999999999999999765 689999999999999999987543 33332
Q ss_pred CCCCCCcceEEeeecCCCCCcccc---------ccCcEEEEeccccC
Q psy9378 485 VMDDSQVSLRSPLFLQESFLLSCL---------SLFFCVLWLCGQVY 522 (522)
Q Consensus 485 ~~~~~~~~~~~~l~Gp~C~~~D~l---------~~~~~~~~~~~~~~ 522 (522)
. +.+...+++|+||+|+++|.+ ..||.|++...|+|
T Consensus 344 ~--~~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY 388 (419)
T 2plj_A 344 K--QGGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAY 388 (419)
T ss_dssp C--CSSCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCSSS
T ss_pred C--CCCCceeEEEEcCCcCCCCeeeecccCCCCCCCCEEEEeCCCCc
Confidence 1 112357899999999999965 45899999888887
No 13
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00 E-value=7.7e-48 Score=410.60 Aligned_cols=322 Identities=20% Similarity=0.165 Sum_probs=279.0
Q ss_pred eEEecCCCCCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCC--------CCeEEeeecCCCcHHHHHHHHHc
Q psy9378 185 LMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLP--------RVDPYYAVKCNDSQMVLEVLAAL 256 (522)
Q Consensus 185 ~~~~~~~~~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp--------~~~i~YAvKAN~~~~Vlk~L~~~ 256 (522)
+.+.++.+.++++++.+|+ ++++||+|+||++.|++|+++|++.++ +++++|++|||+++.|++++.+.
T Consensus 7 ~~~~~~~l~~~~~~~~~l~---~~~~tP~~vidl~~l~~n~~~l~~~~~~a~~~~~~~~~~~~avKan~~~~v~~~l~~~ 83 (434)
T 1twi_A 7 VEIKDGRFFIDGYDAIELA---EKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKL 83 (434)
T ss_dssp EEEETTEEEETTEEHHHHH---HHHCSSEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHHHT
T ss_pred eeEECCEEEECCccHHHHH---HhhCCCEEEEEHHHHHHHHHHHHHhhhhhhcccCCCeEEEEEEccCCCHHHHHHHHHc
Confidence 4455667778899999987 567899999999999999999999987 78999999999999999999999
Q ss_pred CCeEEEEc-----------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCC
Q psy9378 257 GTGFDCAS-----------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDA 309 (522)
Q Consensus 257 G~GfDvaS-----------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~ 309 (522)
|+||+|+| |++++++.|+++|+..++|||++||++|.+.+ +..+|+||||++.
T Consensus 84 G~g~~vas~~E~~~~~~~G~~~~~I~~~g~~k~~~~i~~a~~~~i~~~~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~ 163 (434)
T 1twi_A 84 GCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNV 163 (434)
T ss_dssp TCEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCC
T ss_pred CCcEEEeCHHHHHHHHHCCCCCCcEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCC
Confidence 99999999 88999999999999669999999999998764 4579999999985
Q ss_pred Ccc------cCCCCCccccCcCCC--HHHHHHHHhhC-CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9378 310 EVA------QCQLGMKFGCDPISE--APRLLRLAKSL-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSM 380 (522)
Q Consensus 310 ~~~------~~~~~sKFGi~~e~e--~~~ll~~~k~~-~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l 380 (522)
+.. ++...+|||++++ + +.++++.+++. +|++.|||+|+||+..+++.+.++++++.++++.+++.|+++
T Consensus 164 ~~~~~~~~~tG~~~~rfG~~~~-~~~~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 242 (434)
T 1twi_A 164 NPKTHPKISTGLKKNKFGLDVE-SGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEI 242 (434)
T ss_dssp CTTTCHHHHHHHHHSSCSEEST-TSHHHHHHHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCcccccCCCCCCccCChh-hhHHHHHHHHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 422 2223599999998 8 99999998875 999999999999999889999999999999998888789999
Q ss_pred cEEEEcCCCCCCC-----CCCHHHHHHHHHHHHHhhCCCCCC-cEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCc
Q psy9378 381 RVLDLGGGYPGYT-----GYSMNRIAEIINVALDEYFPVEEG-VSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPT 454 (522)
Q Consensus 381 ~~LdIGGGf~~~~-----~~~~~~~a~~I~~~l~~~~~~~~~-~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~ 454 (522)
++||+||||++.+ ..+++++++.|+..+.++++ ..+ +++++||||+++++||+|+|+|+++|+..+
T Consensus 243 ~~l~~GGg~~~~y~~~~~~~~~~~~~~~i~~~i~~~~~-~~g~~~~~~EpGr~~~~~a~~l~~~V~~vk~~~g------- 314 (434)
T 1twi_A 243 EDVNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKD-KVEMPNLILEPGRSLVATAGYLLGKVHHIKETPV------- 314 (434)
T ss_dssp SEEECCCCBCCCSSSSSCCCCHHHHHHHHHHHHHTTTT-TSCCCEEEECCSHHHHGGGEEEEEEEEEEEECSS-------
T ss_pred CEEEECCCcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh-hcCCeEEEEccChHhhhhceEEEEEEEEEEecCC-------
Confidence 9999999998865 36899999999999999876 345 899999999999999999999999999765
Q ss_pred eEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 455 HTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 455 ~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
++++++|+|+++.+++.+|+..+.+..+ +. +.+. .+++|+||+|+++|.+. .||.|+|..-|+|
T Consensus 315 ~~~~~vd~G~~d~~~~~l~~~~~~~~~~-~~--~~~~-~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY 387 (434)
T 1twi_A 315 TKWVMIDAGMNDMMRPAMYEAYHHIINC-KV--KNEK-EVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAY 387 (434)
T ss_dssp CEEEEESCCTTTCCHHHHHCCCCCEEES-BC--CSCE-EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSS
T ss_pred cEEEEEcCchhcccchHHhcccceeEec-CC--CCCC-ceEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcc
Confidence 5899999999999999999986543333 22 1223 78999999999999654 4899999777777
No 14
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=1.8e-46 Score=399.46 Aligned_cols=302 Identities=16% Similarity=0.157 Sum_probs=254.6
Q ss_pred CccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------
Q psy9378 196 QVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----------- 264 (522)
Q Consensus 196 g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----------- 264 (522)
+.++.+|+ ++++||+|++|+++|++|+++|+ +++ +++||+|||+++.|++++.+.|+||+|+|
T Consensus 14 ~~~~~~l~---~~~~tP~~vidl~~l~~N~~~l~-~~~--~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G 87 (425)
T 1knw_A 14 AENLLRLP---AEFGCPVWVYDAQIIRRQIAALK-QFD--VVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAG 87 (425)
T ss_dssp HHHHHHHH---HHHCSSEEEEEHHHHHHHHHTTT-TSS--EEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTT
T ss_pred hhhHHHHH---HhhCCCEEEEEHHHHHHHHHHHh-hCC--cceEeeecCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcC
Confidence 45666665 66789999999999999999999 897 99999999999999999999999999999
Q ss_pred ----------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCc------ccCCCCCcccc
Q psy9378 265 ----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEV------AQCQLGMKFGC 322 (522)
Q Consensus 265 ----------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~------~~~~~~sKFGi 322 (522)
|++++++.|+++|+. ++|||++||+++.+.+++.++.||||++.+. .++...+|||+
T Consensus 88 ~~~~~~~~~Iv~~g~~k~~~~l~~a~~~~i~-~~vds~~el~~l~~~a~~~~v~lRv~~~~~~~~h~~i~tG~~~~RfG~ 166 (425)
T 1knw_A 88 YNPQTHPDDIVFTADVIDQATLERVSELQIP-VNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGI 166 (425)
T ss_dssp CCTTTCTTSEEEEESCCCHHHHHHHHHHTCC-EEESSHHHHHHHHHHSTTCEEEEEEECSCCSSCTTSCCSSSTTCCCSE
T ss_pred CCCCCCcCeEEEECCCCCHHHHHHHHHcCCE-EEECCHHHHHHHHHhhhhccEEEEECCCCCCCCCcccccCCCCCCCcC
Confidence 567899999999998 9999999999999998888999999998632 23444699999
Q ss_pred CcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-----CCCH
Q psy9378 323 DPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-----GYSM 397 (522)
Q Consensus 323 ~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-----~~~~ 397 (522)
+++ ++.++++.+++.++++.|||||+||++ +++.|.++++++.++ +++.|+++++||+||||++.| ..++
T Consensus 167 ~~~-~~~~~~~~~~~~~l~l~Gl~~H~gs~~-~~~~~~~~~~~~~~~---~~~~G~~~~~ln~GGG~~~~y~~~~~~~d~ 241 (425)
T 1knw_A 167 WYT-DLPAALDVIQRHHLQLVGIHMHIGSGV-DYAHLEQVCGAMVRQ---VIEFGQDLQAISAGGGLSVPYQQGEEAVDT 241 (425)
T ss_dssp EGG-GHHHHHHHHHHTTCEEEEEECCCCCTT-CHHHHHHHHHHHHHH---HHHHTCCCSEEECCCCCCCCCSTTCCCCCH
T ss_pred CHH-HHHHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHH---HHHhCCCCcEEEeCCCcccCCCCCCCCCCH
Confidence 998 999999998777999999999999999 899998888766554 445599999999999998875 3689
Q ss_pred HHHHH-------HHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchh
Q psy9378 398 NRIAE-------IINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNC 470 (522)
Q Consensus 398 ~~~a~-------~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~ 470 (522)
+++++ .++..+. .++++++|||||++++||+|+|+|+++|+..+ ++++++|+|+++.+++
T Consensus 242 ~~~~~~~~~~~~~i~~~~~------~~~~~~~EpGr~~v~~ag~l~t~V~~vk~~~~-------~~~~~vd~G~~d~~~~ 308 (425)
T 1knw_A 242 EHYYGLWNAAREQIARHLG------HPVKLEIEPGRFLVAQSGVLITQVRSVKQMGS-------RHFVLVDAGFNDLMRP 308 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHT------SCCEEEECCSHHHHGGGEEEEEEEEEEEEETT-------EEEEEESCCTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHhC------CCCEEEEcCChHHhhhceEEEEEEEEEEecCC-------cEEEEECCchhhccch
Confidence 99944 4444443 24799999999999999999999999999865 6899999999999999
Q ss_pred hhcccCccccccCCCCCCC--CcceEEeeecCCCCCccccc----------------cCcEEEEeccccC
Q psy9378 471 IIYDHAVCTPIPFNVMDDS--QVSLRSPLFLQESFLLSCLS----------------LFFCVLWLCGQVY 522 (522)
Q Consensus 471 ~l~~~~~~~p~~~~~~~~~--~~~~~~~l~Gp~C~~~D~l~----------------~~~~~~~~~~~~~ 522 (522)
.+|+..+++..+...+.+. ....+++|+||+|+++|++. .||+|+|..-|+|
T Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~s~D~~~~d~~~~~~~~~lp~~~~GD~l~~~~~GAY 378 (425)
T 1knw_A 309 AMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAY 378 (425)
T ss_dssp HHHCCCCCEEEECTTCCCCTTCCEEEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSS
T ss_pred hhhcccceeEecCCCCCccccCCceeEEEECCCCCCCCEEeecCCCCccceeCCCCCCCCEEEEeCCCcc
Confidence 9999876644443222111 22368999999999988753 3699999877777
No 15
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=6.4e-47 Score=402.82 Aligned_cols=311 Identities=22% Similarity=0.224 Sum_probs=263.8
Q ss_pred CCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-------
Q psy9378 194 MTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------- 264 (522)
Q Consensus 194 ~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS------- 264 (522)
..++++.+|+ ++++||+|+||+++|++|+++|++.++ +++++||+|||+++.|++++.+.|+||+|+|
T Consensus 19 ~~~~~~~~l~---~~~~tP~~vidl~~i~~N~~~l~~~~~~~~~~l~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~ 95 (425)
T 2qgh_A 19 SHMFNYEELF---QTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRA 95 (425)
T ss_dssp ----CHHHHH---HHCCSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHH
T ss_pred cccccHHHHH---HhhCCCEEEEEHHHHHHHHHHHHHhcCcCCCEEEEEeccCCCHHHHHHHHHcCCeEEEeCHHHHHHH
Confidence 4667777876 668999999999999999999999998 4699999999999999999999999999999
Q ss_pred ----------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCc------ccCCCCC
Q psy9378 265 ----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEV------AQCQLGM 318 (522)
Q Consensus 265 ----------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~------~~~~~~s 318 (522)
|++++++.|+++|+..++|||++||++|.+.+ +..+|+||||++.+. .++...+
T Consensus 96 ~~~G~~~~~i~~~g~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~tg~~~s 175 (425)
T 2qgh_A 96 LKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKEN 175 (425)
T ss_dssp HHTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTS
T ss_pred HHcCCChhHEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCcccccCCCCC
Confidence 78999999999999769999999999998764 457999999997532 2334579
Q ss_pred ccccCcCCCHHHHHHHHhhC-CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC----
Q psy9378 319 KFGCDPISEAPRLLRLAKSL-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT---- 393 (522)
Q Consensus 319 KFGi~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~---- 393 (522)
|||++++ ++.++++.+++. +|++.|||+|+||+..+++.+.++++++.++++.+++.|+++++||+||||++.|
T Consensus 176 RfG~~~~-e~~~l~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~GGG~~i~y~~~~ 254 (425)
T 2qgh_A 176 KFGVGEK-EALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEE 254 (425)
T ss_dssp SSSBCHH-HHHHHHHHHHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCC
T ss_pred CCcCCHH-HHHHHHHHHHhCCCccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcCcCCCCCC
Confidence 9999998 999999998875 9999999999999988999999999999999988888899999999999998876
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhc
Q psy9378 394 GYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIY 473 (522)
Q Consensus 394 ~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~ 473 (522)
..+++++++.+++.+..+ ++++++||||+++++||+|+|+|+++|+..+ +.++++|+|+++.+++.+|
T Consensus 255 ~~~~~~~~~~v~~~i~~~-----~~~~~~EpGr~~~~~a~~l~t~V~~vk~~~~-------~~~~~vd~G~~d~~~~~l~ 322 (425)
T 2qgh_A 255 TIKLYDYAQGILNALQGL-----DLTIICEPGRSIVAESGELITQVLYEKKAQN-------KRFVIVDAGMNDFLRPSLY 322 (425)
T ss_dssp CCCHHHHHHHHHHHTTTC-----CCEEEECCCHHHHTTTEEEEEEEEEEEC--C-------CCEEEESCCTTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhc-----CCEEEEcCchhhhhcceEEEEEEEEEEecCC-------CEEEEEcCchhcccchhhc
Confidence 356899999999887643 4789999999999999999999999998765 5799999999999999999
Q ss_pred ccCccccccCCCCCCCCcceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 474 DHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 474 ~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
+..+.+..+ +.. ......+++|+||+|+++|.+. .||+|+|..-|+|
T Consensus 323 ~~~~~~~~~-~~~-~~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY 378 (425)
T 2qgh_A 323 HAKHAIRVI-TPS-KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAY 378 (425)
T ss_dssp CCCCCEEEC-SCC----CCEEEEEECSSSSTTCEEEEEEEECCCCTTCEEEECSCSSS
T ss_pred CCcceeeec-cCC-CCCcceEEEEECCCcCCCcEecccccCCCCCCCCEEEEeCCCCc
Confidence 987654433 210 1112468999999999999654 4799999777777
No 16
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-44 Score=378.01 Aligned_cols=291 Identities=15% Similarity=0.179 Sum_probs=249.5
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhCCC--CeEEeeecCCCcHHHHHHHHHcCCeEEEEc--------------------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKLPR--VDPYYAVKCNDSQMVLEVLAALGTGFDCAS-------------------- 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~lp~--~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-------------------- 264 (522)
++++||+|+||+++|++|+++|++.+++ ++++|++|||+++.|++.+.+.|+||+|+|
T Consensus 9 ~~~~tP~~vidl~~l~~N~~~l~~~~~~~~~~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~Il~~ 88 (386)
T 2yxx_A 9 EIHGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWN 88 (386)
T ss_dssp HHHCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEEC
T ss_pred HhcCCCEEEEEHHHHHHHHHHHHHhhccCCceEEEEEeeCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcCCChhhEEEe
Confidence 6678999999999999999999999984 599999999999999999999999999999
Q ss_pred ---CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCC-CeEEEEEeeCCCcc------cCCCCCccccCcCCCHHHHHHH
Q psy9378 265 ---KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPT-AQLVIRIRCDAEVA------QCQLGMKFGCDPISEAPRLLRL 334 (522)
Q Consensus 265 ---K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~-~~V~LRIn~~~~~~------~~~~~sKFGi~~e~e~~~ll~~ 334 (522)
|++++++.|+++|+..++|||++||++|.+.+++ .++.||||++.+.. ++...+|||++++ + .++++
T Consensus 89 ~~~k~~~~l~~a~~~~v~~~~vds~~el~~l~~~a~~~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~~~-~-~~~~~- 165 (386)
T 2yxx_A 89 GNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLE-D-LDSFM- 165 (386)
T ss_dssp CSCCCHHHHHHHHHTTCCEEEECCHHHHHHHHHHCCTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGG-G-HHHHH-
T ss_pred CCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhcCcCCeEEEEECCCCCCCCCcccccCCCCCCCCCChh-H-HHHHh-
Confidence 8999999999999956999999999999999884 89999999986421 2222499999998 8 88888
Q ss_pred HhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC---CCCHHHHHHHHHHHHHhh
Q psy9378 335 AKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT---GYSMNRIAEIINVALDEY 411 (522)
Q Consensus 335 ~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~---~~~~~~~a~~I~~~l~~~ 411 (522)
.+..++++.|+|+|+||++.+++.+.++++++.++++.+ +++++|+||||++.+ ..+++.+++.+++.+..|
T Consensus 166 ~~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l-----~~~~~n~GGG~~~~~~~~~~~~~~~~~~vr~~i~~y 240 (386)
T 2yxx_A 166 ERFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY-----GFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRF 240 (386)
T ss_dssp HHHTTSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH-----TCSEEECCCCBCCCSSSCCCCHHHHHHHTGGGGTTC
T ss_pred hccCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-----CCCEEEECCCcCcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 666799999999999999888888888888777766544 688999999998876 357889999998888765
Q ss_pred CCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCc
Q psy9378 412 FPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQV 491 (522)
Q Consensus 412 ~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~ 491 (522)
+ ++++||||++++++|+++|+|+++|+..+ ++++++|+|+++.+++.+|+..+++..+.+. . .
T Consensus 241 -----~-~~~~epGr~~~~~a~~l~t~V~~vk~~~g-------~~~~~vd~G~~d~~~~~l~~~~~~~~~i~~~---~-~ 303 (386)
T 2yxx_A 241 -----K-RVIVEIGRYIVAPSGYLLLRVVLVKRRHN-------KAFVVVDGGMNVLIRPALYSAYHRIFVLGKQ---G-K 303 (386)
T ss_dssp -----S-EEEEEECHHHHGGGEEEEEEEEEEEEETT-------EEEEEESCCTTTCCHHHHTCCCCCEEETTCC---C-C
T ss_pred -----C-eEEecCcceeeccccEEEEEEEEEEecCC-------cEEEEEeCccccccchHHhcccCceEeccCC---C-C
Confidence 1 88999999999999999999999999865 6899999999999999999987653333221 1 2
Q ss_pred ceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 492 SLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 492 ~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
..+++|+||+|+++|.+. .||.|++.--|+|
T Consensus 304 ~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY 343 (386)
T 2yxx_A 304 EMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAY 343 (386)
T ss_dssp SEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSS
T ss_pred ceEEEEEcCCCCCCCEEeeccccCCCCCCCEEEEeCCCCc
Confidence 578999999999999643 4899999777777
No 17
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.4e-43 Score=390.70 Aligned_cols=322 Identities=18% Similarity=0.194 Sum_probs=259.0
Q ss_pred CcceEEecCCCCCCCccccCCccc--cCCCCCeEEEEeHHHHHHHHHHHHHhCC----------CCeEEeeecCCCcHHH
Q psy9378 182 PKSLMVYPRTDDMTQVPVYNYPDN--VGMKEDAFYVLDVGEIVRKHEDWKLKLP----------RVDPYYAVKCNDSQMV 249 (522)
Q Consensus 182 ~~~~~~~~~~~~~~g~~l~~l~~~--~~~~~tP~yV~Dl~~I~~ni~~l~~~lp----------~~~i~YAvKAN~~~~V 249 (522)
++++.|.++. .+++.+|++. .++++||+||+|++.|++|+++|+++|+ +++++||+|||+++.|
T Consensus 18 ~G~l~v~~~~----~v~l~~l~~~l~~~~~gTP~yV~D~d~L~~ni~~l~~af~~a~~~~~y~g~~~i~YAVKAN~~~~V 93 (619)
T 3nzp_A 18 NGKVCINYEK----KPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGF 93 (619)
T ss_dssp SSSEEESSSS----CCBHHHHHHHHHHTTCCSCEEEECHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEGGGCCCHHH
T ss_pred CCEEEEecCC----CCCHHHHHHHHHhcCCCCCEEEEcHHHHHHHHHHHHHHHHHHhhhcccCCCEEEEEEEeccCcHHH
Confidence 5566655431 3788888854 2458999999999999999999999986 3689999999999999
Q ss_pred HHHHHHcC----CeEEEEc----------------------CCHHHHHHHH---HcCCC-EEEEcCHHHHHHHhhhC---
Q psy9378 250 LEVLAALG----TGFDCAS----------------------KPISHIRYAA---EYGID-TMTFDNEIELQKVKQFH--- 296 (522)
Q Consensus 250 lk~L~~~G----~GfDvaS----------------------K~~~eL~~A~---~~Gv~-~i~vDS~~EL~~i~~~~--- 296 (522)
++.+.+.| +||||+| |++++|++|+ +.|.. .++|||++||++|.+++
T Consensus 94 l~~L~~~Ga~~g~G~dvaS~~El~~al~aG~~~~~Iv~nG~K~~e~I~~Al~a~~~g~~v~ivVDS~~ELe~l~~~a~~~ 173 (619)
T 3nzp_A 94 VKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKER 173 (619)
T ss_dssp HHHHHHHTGGGTCEEEECSHHHHHHHHHHSCTTSEEEECSCCCHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCceEEEeCHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHhhhhcCCcEEEEECCHHHHHHHHHHHHHc
Confidence 99999988 7999999 8999999987 55543 58999999999999876
Q ss_pred --CCCeEEEEEeeCCCc-----ccCCCCCccccCcCCCHHHHHHHHhhCC-C-eEEEEEEecCCCCCChHHHHHHHHHHH
Q psy9378 297 --PTAQLVIRIRCDAEV-----AQCQLGMKFGCDPISEAPRLLRLAKSLD-L-DVVGVSFHVGSGCGDPPVFGRAIYSAR 367 (522)
Q Consensus 297 --~~~~V~LRIn~~~~~-----~~~~~~sKFGi~~e~e~~~ll~~~k~~~-L-~l~GlhfH~GS~~~~~~~~~~ai~~~~ 367 (522)
+.++|+||||++... .++...+|||++++ ++.++++.+++.+ + ++.|||||+|||+.+++.|.++++++.
T Consensus 174 g~~~~~V~LRInp~~~g~~~~~~TGg~~sKFGi~~e-e~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~ 252 (619)
T 3nzp_A 174 FKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTST-ELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAG 252 (619)
T ss_dssp CSCCCEEEEEBCCTTC-------------CCSBCHH-HHHHHHHHHHHTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEecCCCCCcccccCCCCCccCcCCHH-HHHHHHHHHHhCCCCCceeEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 568999999986421 23445699999998 9999999998765 5 599999999999999999999999999
Q ss_pred HHHHHHhhcCC-CccEEEEcCCCCCCC---------CCCHHHHHHHHHHHHHhhCCC--CCCcEEEecCcceeeccceeE
Q psy9378 368 QIFDLGNSLGF-SMRVLDLGGGYPGYT---------GYSMNRIAEIINVALDEYFPV--EEGVSIIAEPGRYYVASAFTL 435 (522)
Q Consensus 368 ~l~~~~~~~G~-~l~~LdIGGGf~~~~---------~~~~~~~a~~I~~~l~~~~~~--~~~~~li~EPGR~lva~ag~L 435 (522)
++++.+++.|+ ++++|||||||+++| ++++++|++.|.+++++++.. .+.++|++|||||+|++||+|
T Consensus 253 ~l~~~L~~~G~~~l~~LDiGGG~gI~Y~~~~~~~s~~~~l~eya~~I~~~l~~~~~~~~~~~p~Ii~EPGR~iva~aGvL 332 (619)
T 3nzp_A 253 NIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVL 332 (619)
T ss_dssp HHHHHHHHTTCTTCCEEEEESCBCCCCCCSSSCCSCSSCHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCHHHHGGGEEE
T ss_pred HHHHHHHHhcCCCCCEEEeCCCcCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeccHHHHHhhhhE
Confidence 99988888999 999999999999975 257999999999999887532 256899999999999999999
Q ss_pred EEEEEEEEeeCCCC------C-----------------------------------------------------------
Q psy9378 436 ATLIHSKRDILGAN------S----------------------------------------------------------- 450 (522)
Q Consensus 436 vt~V~~~K~~~~~~------~----------------------------------------------------------- 450 (522)
+|+|+++|...... .
T Consensus 333 vt~Vi~vk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~d~~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~ 412 (619)
T 3nzp_A 333 IAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLI 412 (619)
T ss_dssp EEEEEEEECCCCCGGGSCCCSSCCHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcccccCCCccccHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999753210 0
Q ss_pred ---------C----CC-------ceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc
Q psy9378 451 ---------S----VP-------THTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS 509 (522)
Q Consensus 451 ---------g----~~-------~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~ 509 (522)
. ++ ...+|++|-+++.|+-..|=-. ...|++--.+-++....+..|.+=||.|.+++.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~n~S~fqslpD~W~i~-q~fpi~Pi~rl~e~p~~~~~l~diTCDsdg~i~ 490 (619)
T 3nzp_A 413 TKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLE-QNFPIMPLDRLDEEPTRSASIWDITCDSDGEIS 490 (619)
T ss_dssp HHHHHHHCC-------------CCSBEEEESSCTTTTCHHHHHSS-CCCCEEESSCTTSCCCCBBCCEESCSCTTSBCC
T ss_pred HHHHHHHhhccccchhHHHHHHHhhHHheeeehhhccCcchhhcC-cccceeeccccCCCcceeeEEecccccCCCccc
Confidence 0 00 0368999999999987665323 345555334445556778999999999999865
No 18
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=100.00 E-value=5.2e-43 Score=371.67 Aligned_cols=315 Identities=22% Similarity=0.284 Sum_probs=262.6
Q ss_pred cCCCCCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc----
Q psy9378 189 PRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS---- 264 (522)
Q Consensus 189 ~~~~~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS---- 264 (522)
++.+.++++++.+++ ++++||+|++|+++|++|+++|++.+++++++|++|||+++.|++.+.+.|+||+|+|
T Consensus 15 ~~~l~~~~~~~~~l~---~~~~tP~~vidl~~l~~N~~~l~~~~~~~~l~~vvKan~~~~v~~~l~~~G~~~~vas~~E~ 91 (420)
T 2p3e_A 15 DGELFIEGVSLKELA---QTFGTPLYVYSSNFIKERFEAYRKAFPDALICYAVKANFNPHLVKLLGELGAGADIVSGGEL 91 (420)
T ss_dssp TTEEEETTEEHHHHH---HHHCSSEEEEEHHHHHHHHHHHHHHSTTSEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHH
T ss_pred CceeEECCccHHHHH---HhhCCCEEEEEHHHHHHHHHHHHHhCCcCeEEEEEecCCCHHHHHHHHHcCCeEEEeCHHHH
Confidence 455667888888887 5678999999999999999999999998999999999999999999999999999999
Q ss_pred -------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCc------ccCC
Q psy9378 265 -------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEV------AQCQ 315 (522)
Q Consensus 265 -------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~------~~~~ 315 (522)
|++++++.|+++|+..+++||++|+++|.+.+ +..+|+||||++.+. .++.
T Consensus 92 ~~~~~~G~~~~~Il~~g~~~~~~~l~~a~~~~i~~~~vds~~~l~~l~~~a~~~~~~~~v~lRvn~~~~~~~~~~idtG~ 171 (420)
T 2p3e_A 92 YLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGM 171 (420)
T ss_dssp HHHHHTTCCGGGEEECSSCCCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC--------------
T ss_pred HHHHHcCCChhHEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCCcccccCC
Confidence 78999999999999669999999999998753 457999999997632 1232
Q ss_pred CCCccccCcCCCHHHHHHHHhhC-CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC
Q psy9378 316 LGMKFGCDPISEAPRLLRLAKSL-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG 394 (522)
Q Consensus 316 ~~sKFGi~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~ 394 (522)
..+|||++++ ++.++++.+++. ++++.|+|+|+||+..+.+.+.++++++.++++.+++.|++++++|+|||++..+.
T Consensus 172 ~~~R~G~~~~-e~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~Ggg~~~~~~ 250 (420)
T 2p3e_A 172 QKSKFGVDIR-EAQKEYEYASKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYK 250 (420)
T ss_dssp --CCSCEEGG-GHHHHHHHHHTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCCS
T ss_pred CCCCCCCCHH-HHHHHHHHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcCcCCC
Confidence 4599999998 999999999875 99999999999999877778888999999999888888999999999999988653
Q ss_pred -----CCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcch
Q psy9378 395 -----YSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFN 469 (522)
Q Consensus 395 -----~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~ 469 (522)
.+++.+++.++..+..| +++++.||||+++++|++++|+|+.+|+..+ ..++++|.|+++.++
T Consensus 251 ~~~~~~~~~~~~~~vr~g~~~y-----g~~~~~e~Gr~~~~~a~~l~t~Vi~vk~~~g-------~~~a~v~~G~~dg~~ 318 (420)
T 2p3e_A 251 PEDKEPAPQDLADLLKDLLENV-----KAKIILEPGRSIMGNAGILITQVQFLKDKGS-------KHFIIVDAGMNDLIR 318 (420)
T ss_dssp TTCCCCCHHHHHHHHTTTC--C-----CSEEEECCSHHHHGGGEEEEEEEEEEEEETT-------EEEEEESCCTTTCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-----CCEEEEeCCHHHHhhceEEEEEEEEEEecCC-------cEEEEEcCchhcccc
Confidence 45889999998877765 3688999999999999999999999999876 679999999999999
Q ss_pred hhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 470 CIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 470 ~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
+.+|+..+++ ++++.. .+...+++|+||+|+++|.+. .||.|.+.--|+|
T Consensus 319 ~~l~~~~~~~-v~v~~~--g~~~~~~~i~G~~Cms~D~~~~d~~lp~~~~GD~v~~~~~gAY 377 (420)
T 2p3e_A 319 PSIYNAYHHI-IPVETK--ERKKVVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAY 377 (420)
T ss_dssp HHHHCCCCCE-EESBCC--C---CEEEEECSSSSTTCEEEEEEECCCCCTTCEEEECSCTTT
T ss_pred hhhhCcccee-EecCCC--CCCceeEEEEccCCCCccEEeecccCCCCCCCCEEEEeCCCcc
Confidence 9999876543 223211 123367899999999999654 4899998666776
No 19
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.6e-42 Score=384.15 Aligned_cols=324 Identities=18% Similarity=0.136 Sum_probs=265.6
Q ss_pred CCcceEEecC-CCCCCCccccCCcc--ccCCCCCeEEEEeHHHHHHHHHHHHHhCC----------CCeEEeeecCCCcH
Q psy9378 181 IPKSLMVYPR-TDDMTQVPVYNYPD--NVGMKEDAFYVLDVGEIVRKHEDWKLKLP----------RVDPYYAVKCNDSQ 247 (522)
Q Consensus 181 ~~~~~~~~~~-~~~~~g~~l~~l~~--~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp----------~~~i~YAvKAN~~~ 247 (522)
.++++.+-+. ...-.++++.+|++ ..++++||+||+|++.|++|+++|+++|+ +++++||+|||+++
T Consensus 53 ~~G~l~v~g~~~~~~~~v~l~eLa~~l~~~~~gTPlyV~D~d~Lr~ni~~l~~af~~a~~~~~Y~~~~~i~YAvKAN~~~ 132 (666)
T 3nzq_A 53 ELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHR 132 (666)
T ss_dssp TTSSEEECSCTTSTTCCEEHHHHHHHHHHTTCCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEGGGCCCH
T ss_pred CCCeEEEeCCCCCCCCCcCHHHHHHHHHhccCCCCEEEeCHHHHHHHHHHHHHHHHHhHHhhcccCCeEEEEEEeeCChH
Confidence 4777887552 23456799999985 23579999999999999999999999985 37899999999999
Q ss_pred HHHHHHHHcC--CeEEEEc-----------------------CCHHHHHHHHH---cCCC-EEEEcCHHHHHHHhhhC--
Q psy9378 248 MVLEVLAALG--TGFDCAS-----------------------KPISHIRYAAE---YGID-TMTFDNEIELQKVKQFH-- 296 (522)
Q Consensus 248 ~Vlk~L~~~G--~GfDvaS-----------------------K~~~eL~~A~~---~Gv~-~i~vDS~~EL~~i~~~~-- 296 (522)
.|++.+.+.| +||||+| |++++|++|++ .|+. .++|||++||++|.+++
T Consensus 133 ~Vl~~l~~~G~~~G~dvaS~gEl~~al~aG~~p~~iIv~nG~K~~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~ 212 (666)
T 3nzq_A 133 RVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAER 212 (666)
T ss_dssp HHHHHHHTSSSCEEEEESSHHHHHHHHHHHTTSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCceEEEeCHHHHHHHHHcCCCCCcEEEEcCCCCHHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHH
Confidence 9999999999 8999999 89999999986 4654 48999999999998875
Q ss_pred --CCCeEEEEEeeCCCc-----ccCCCCCccccCcCCCHHHHHHHHhhC-CCe-EEEEEEecCCCCCChHHHHHHHHHHH
Q psy9378 297 --PTAQLVIRIRCDAEV-----AQCQLGMKFGCDPISEAPRLLRLAKSL-DLD-VVGVSFHVGSGCGDPPVFGRAIYSAR 367 (522)
Q Consensus 297 --~~~~V~LRIn~~~~~-----~~~~~~sKFGi~~e~e~~~ll~~~k~~-~L~-l~GlhfH~GS~~~~~~~~~~ai~~~~ 367 (522)
+.++|+||||++... .++...+|||++++ ++.++++.+++. +++ +.|||||+|||+.+++.|.++++++.
T Consensus 213 ~g~~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~-e~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~ 291 (666)
T 3nzq_A 213 LNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAAT-QVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESA 291 (666)
T ss_dssp TTCCCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHH-HHHHHHHHHHHTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHH
T ss_pred cCCCceEEEEEEecCCCCcCccccCCCCCcCcCCHH-HHHHHHHHHHhCCCCCCeEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 457999999987532 23445699999998 999999999875 576 99999999999999999999999999
Q ss_pred HHHHHHhhcCCCccEEEEcCCCCCCCC-----------CCHHHHHHHHHHHHHhhCCC--CCCcEEEecCcceeecccee
Q psy9378 368 QIFDLGNSLGFSMRVLDLGGGYPGYTG-----------YSMNRIAEIINVALDEYFPV--EEGVSIIAEPGRYYVASAFT 434 (522)
Q Consensus 368 ~l~~~~~~~G~~l~~LdIGGGf~~~~~-----------~~~~~~a~~I~~~l~~~~~~--~~~~~li~EPGR~lva~ag~ 434 (522)
++++.+++.|+++++|||||||+++|. +++++|++.|.+++++++.. .+.++|++|||||+|++||+
T Consensus 292 ~l~~~L~~~G~~l~~LDiGGGfgI~Y~~~~~~~~~s~~~~leeya~~I~~~l~~~~~~~~~~~p~Ii~EPGRaiVa~aGv 371 (666)
T 3nzq_A 292 RFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTV 371 (666)
T ss_dssp HHHHHHHTTTCCCCEEECCSCCCCCSSSSCSSSTTCCSSCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCCEEEeCCCcCCCcCCccccccccCCCCHHHHHHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHhhhE
Confidence 999888899999999999999998762 47999999999999887642 24689999999999999999
Q ss_pred EEEEEEEEEeeCCCC---C------------------C------------------------------------------
Q psy9378 435 LATLIHSKRDILGAN---S------------------S------------------------------------------ 451 (522)
Q Consensus 435 Lvt~V~~~K~~~~~~---~------------------g------------------------------------------ 451 (522)
|+|+|+++|...... . .
T Consensus 372 Lvt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l 451 (666)
T 3nzq_A 372 LVSNIIGVERNEYTVPTAPAEDAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQL 451 (666)
T ss_dssp EEEEEEEEECCCCCCCCCCCTTSCHHHHHHHHHHHHHSSSSCSTTHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 999999999753210 0 0
Q ss_pred ---------------C--Cce----------EEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCC
Q psy9378 452 ---------------V--PTH----------TMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFL 504 (522)
Q Consensus 452 ---------------~--~~~----------~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~ 504 (522)
. ... .+|++|-+++.|+-..+ .-....|++--.+-++.+..+..|.+=||.|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~n~S~fqslPD~W-~i~q~fpi~Pi~rl~e~p~~~~~l~diTCDs 530 (666)
T 3nzq_A 452 YLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAW-GIDQLFPVLPLEGLDQVPERRAVLLDITCDS 530 (666)
T ss_dssp HHHHHHHHHHHCCTTSGGGHHHHHHHHHTTCEEEEESSCHHHHCTHHH-HSCCCCCEEESSCTTSCCCEEEEEEESCSST
T ss_pred HHHHHHHHHHHhhccccCChHHHHHHHHHHhHHheeehhhhccCcchh-hhccccceeeccccCCCcceeeEEeccccCC
Confidence 0 001 38999999999876664 3333456553344556678899999999999
Q ss_pred cc
Q psy9378 505 LS 506 (522)
Q Consensus 505 ~D 506 (522)
.=
T Consensus 531 dG 532 (666)
T 3nzq_A 531 DG 532 (666)
T ss_dssp TC
T ss_pred CC
Confidence 83
No 20
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.5e-42 Score=380.48 Aligned_cols=264 Identities=21% Similarity=0.212 Sum_probs=227.8
Q ss_pred CCcceEEecCCCCCCCccccCCccc--cCCCCCeEEEEeHHHHHHHHHHHHHhCC----------CCeEEeeecCCCcHH
Q psy9378 181 IPKSLMVYPRTDDMTQVPVYNYPDN--VGMKEDAFYVLDVGEIVRKHEDWKLKLP----------RVDPYYAVKCNDSQM 248 (522)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~l~~l~~~--~~~~~tP~yV~Dl~~I~~ni~~l~~~lp----------~~~i~YAvKAN~~~~ 248 (522)
+.+++.+.+....-.++++.+|++. .++++||+||+|++.|++|+++|+++|+ +++++||+|||+++.
T Consensus 32 ~~G~l~v~~~~~~~~~v~l~eLa~~l~~~~~gTPlyV~D~d~L~~ni~~l~~af~~a~~~~~y~~~~~i~YAvKAN~~~~ 111 (648)
T 3n2o_A 32 DQGEMYVSPRSDNAHQIQLSKIVKQLEERQLNVPVLVRFPQILHQRVHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQRE 111 (648)
T ss_dssp TTSCEEECCSTTCCCCEEHHHHHHHHHHTTCCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCSSCEEECEEGGGCCCHH
T ss_pred CCCcEEEeCCCCCCCccCHHHHHHHHhhcCCCCCEEEEeHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEEEeecCcHH
Confidence 3677887664344456888888842 2578999999999999999999999985 468999999999999
Q ss_pred HHHHHHHc-------CCeEEEEc-----------------------CCHHHHHHHHH---cCCC-EEEEcCHHHHHHHhh
Q psy9378 249 VLEVLAAL-------GTGFDCAS-----------------------KPISHIRYAAE---YGID-TMTFDNEIELQKVKQ 294 (522)
Q Consensus 249 Vlk~L~~~-------G~GfDvaS-----------------------K~~~eL~~A~~---~Gv~-~i~vDS~~EL~~i~~ 294 (522)
|++.+.+. |+|+||+| |++++|+.|++ .|+. .++|||++||++|.+
T Consensus 112 Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~~~e~iIv~nG~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~ 191 (648)
T 3n2o_A 112 VVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHASSVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLR 191 (648)
T ss_dssp HHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTSSSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHH
T ss_pred HHHHHHHhCCccccCCceEEecCHHHHHHHHHcCCCCCcEEEecCCCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHH
Confidence 99999998 69999999 89999999985 6765 489999999999988
Q ss_pred hC----CCCeEEEEEeeCCCc-----ccCCCCCccccCcCCCHHHHHHHHhhC-CCe-EEEEEEecCCCCCChHHHHHHH
Q psy9378 295 FH----PTAQLVIRIRCDAEV-----AQCQLGMKFGCDPISEAPRLLRLAKSL-DLD-VVGVSFHVGSGCGDPPVFGRAI 363 (522)
Q Consensus 295 ~~----~~~~V~LRIn~~~~~-----~~~~~~sKFGi~~e~e~~~ll~~~k~~-~L~-l~GlhfH~GS~~~~~~~~~~ai 363 (522)
++ +.++|+||||++... .++...||||++++ ++.++++.+++. .++ +.|||||+|||+.+++.|.+++
T Consensus 192 ~A~~~g~~~~V~LRInp~~~~~~~~i~TGg~~SKFGi~~~-e~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~al 270 (648)
T 3n2o_A 192 EAKSLGVTPRLGIRIRLASQGAGKWQASGGEKSKFGLSAS-QVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGV 270 (648)
T ss_dssp HHHHHTCCCEEEEEBCCSTTSTTTTCSSSSCCCCCCBCHH-HHHHHHHHHHHTTCGGGEEEEECCCCSSBCCHHHHHHHH
T ss_pred HHHhcCCCcEEEEEEECCCCCCCCccccCCCCCcCcCCHH-HHHHHHHHHHhCCCCCceEEEEEECCCCCCCHHHHHHHH
Confidence 75 468999999987432 23445699999998 999999999876 465 9999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccEEEEcCCCCCCCC-----------CCHHHHHHHHHHHHHhhCCC--CCCcEEEecCcceeec
Q psy9378 364 YSARQIFDLGNSLGFSMRVLDLGGGYPGYTG-----------YSMNRIAEIINVALDEYFPV--EEGVSIIAEPGRYYVA 430 (522)
Q Consensus 364 ~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~-----------~~~~~~a~~I~~~l~~~~~~--~~~~~li~EPGR~lva 430 (522)
+++.++++.+++.|+++++|||||||+++|. +++++|++.|.+++++++.. .+.++|++|||||+|+
T Consensus 271 ~~~~~l~~~L~~~G~~l~~LDiGGGfgI~Y~~~~~~~~~s~~~~leeya~~I~~~l~~~~~~~~~~~p~Ii~EPGR~iVa 350 (648)
T 3n2o_A 271 NESARFYCELRTLGANITYFDVGGGLAIDYDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPMPVIISESGRSLTA 350 (648)
T ss_dssp HHHHHHHHHHHHTTCCCCEEECCSCBCCCTTSCCCSSTTSCSCCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHG
T ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCcCCCcCCccccccccCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCHHHHH
Confidence 9999999888899999999999999998763 57999999999999887642 2468999999999999
Q ss_pred cceeEEEEEEEEEee
Q psy9378 431 SAFTLATLIHSKRDI 445 (522)
Q Consensus 431 ~ag~Lvt~V~~~K~~ 445 (522)
+||+|+|+|+++|..
T Consensus 351 ~aGvLvt~Vi~vK~~ 365 (648)
T 3n2o_A 351 HHAVLISNVIGTETY 365 (648)
T ss_dssp GGEEEEEEEEEEECC
T ss_pred hhheEEEEEEEEEec
Confidence 999999999999975
No 21
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.95 E-value=3.6e-28 Score=252.87 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=206.2
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecC----CCcHHHHHHHHHcCC-eEEEEc--------------------
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKC----NDSQMVLEVLAALGT-GFDCAS-------------------- 264 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKA----N~~~~Vlk~L~~~G~-GfDvaS-------------------- 264 (522)
.+|++++|+++|++|++++++.+++++++|++|| |+++.|++.+.++|+ +|+|+|
T Consensus 2 ~~~~~~idl~~l~~N~~~~~~~~~~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~~~il~~~ 81 (361)
T 2dy3_A 2 NLLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCWI 81 (361)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHTTSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEEECC
T ss_pred CceEEEEeHHHHHHHHHHHHHhCCCcEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCEEEEC
Confidence 4799999999999999999999988999999999 799999999999996 999999
Q ss_pred -CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC-CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCe
Q psy9378 265 -KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP-TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLD 341 (522)
Q Consensus 265 -K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~-~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~ 341 (522)
+++++++.|++.++ .+++||++++++|.+.++ ..+|+|||+++ .+|||++++ ++.++++.+++ .+++
T Consensus 82 ~~~~~~~~~~~~~~i-~~~vds~~~l~~l~~~a~~~~~v~l~vdtG--------~~R~G~~~~-~~~~~~~~~~~~~~l~ 151 (361)
T 2dy3_A 82 WTPEQDFRAAIDRNI-DLAVISPAHAKALIETDAEHIRVSIKIDSG--------LHRSGVDEQ-EWEGVFSALAAAPHIE 151 (361)
T ss_dssp CCTTSCHHHHHTTTC-EEEECSHHHHHHHHTSCCSCEEEEEEBCCS--------SCSSSBCHH-HHHHHHHHHHTCTTEE
T ss_pred CCCHHHHHHHHHcCC-EEEECCHHHHHHHHHhCccCCEEEEEEeCC--------CCCCCCCHH-HHHHHHHHHHhCCCCC
Confidence 66788999999999 599999999999998876 36777777765 389999998 99999999887 5999
Q ss_pred EEEEEEecCCCCCCh-HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEE
Q psy9378 342 VVGVSFHVGSGCGDP-PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSI 420 (522)
Q Consensus 342 l~GlhfH~GS~~~~~-~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~l 420 (522)
+.|||+|+||+.... ..+.++++.+.++++.+++.|++++++|+||+.+..+.. +..++.++..+.-|.. .+...
T Consensus 152 ~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~s~~~~~~~--~~~~~~vR~G~~l~g~-~~~~~- 227 (361)
T 2dy3_A 152 VTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRS--DLHMEMVRPGLAFYGL-EPVAG- 227 (361)
T ss_dssp EEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCG--GGCTTEECCCGGGGTC-CSSTT-
T ss_pred EEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEEeCCHHHhcCc--ccCCCEEecchHhhCC-Ccccc-
Confidence 999999999986422 236778888888888888889999999999986432211 1111122222222211 11112
Q ss_pred EecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcc
Q psy9378 421 IAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVS 492 (522)
Q Consensus 421 i~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~ 492 (522)
+||| ++++++++|+|+.+|+..... .+ ....++..++.|+.+.+...+++.. ++++. .
T Consensus 228 -~e~~---~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l~~~~---~v~i~-------g 293 (361)
T 2dy3_A 228 -LEHG---LKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKF---SVTID-------G 293 (361)
T ss_dssp -CCCS---CCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCGGGTTTC---EEEET-------T
T ss_pred -cCCC---ceeEEEEEEEEEEEEEcCCCCEEeeCCEEECCCCCEEEEEeeccccCcCcccCCCc---eEEEC-------C
Confidence 2777 899999999999999853210 00 0125688999999888877776531 22221 2
Q ss_pred eEEeeecCCCCC--------cc-ccccCcEEEEe
Q psy9378 493 LRSPLFLQESFL--------LS-CLSLFFCVLWL 517 (522)
Q Consensus 493 ~~~~l~Gp~C~~--------~D-~l~~~~~~~~~ 517 (522)
.++.++|++|+- .+ .+..||.|.+.
T Consensus 294 ~~~~ivG~vcmD~~~~d~~~~~~~~~~GD~v~~~ 327 (361)
T 2dy3_A 294 LDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIF 327 (361)
T ss_dssp EEEEEESCCCSSCEEEEEETCTTCCCTTCEEEEE
T ss_pred EEeeEeeEEecccEEEEccCCCCCCCCCCEEEEE
Confidence 568999999951 22 45678888773
No 22
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.94 E-value=1.5e-26 Score=242.99 Aligned_cols=283 Identities=14% Similarity=0.123 Sum_probs=209.1
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecC----CCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKC----NDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKA----N~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
+.+|+++||+++|++|++++++.+++++++|++|| ++++.|++.+.+.|+ +|+|+|
T Consensus 5 ~~~p~~~idl~~i~~N~~~l~~~~~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~~~il~~ 84 (386)
T 1vfs_A 5 PTRVYAEIDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIMCW 84 (386)
T ss_dssp CSSEEEEEEHHHHHHHHHHHHTTSTTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEEEC
T ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCEEEE
Confidence 46999999999999999999999999999999999 789999999999997 899999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHH---HHHH
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRL---LRLA 335 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~l---l~~~ 335 (522)
.++++++.+++.++ .+++||++++++|.+.+ +..+|+|+||++ .+|||++++ ++.++ ++.+
T Consensus 85 ~~~~~~~~~~~~~~~i-~~~vds~~~l~~l~~~a~~~~~~~~V~l~vdtG--------~~R~G~~~~-e~~~~~~~~~~i 154 (386)
T 1vfs_A 85 LWTPGGPWREAIETDI-DVSVSGMWALDEVRAAARAAGRTARIQLKADTG--------LGRNGCQPA-DWAELVGAAVAA 154 (386)
T ss_dssp CCCTTCCHHHHHHTTC-EEEECSHHHHHHHHHHHHHHTSCEEEEEEBCSS--------CCSSSBCHH-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCC-EEEECCHHHHHHHHHHHHhcCCceEEEEEEcCC--------CCCCCCCHh-HHHHHHHHHHHH
Confidence 44578999999999 59999999999998764 456888998875 389999987 77555 7777
Q ss_pred hh-CCCeEEEEEEecCCCCCCh-HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCC
Q psy9378 336 KS-LDLDVVGVSFHVGSGCGDP-PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFP 413 (522)
Q Consensus 336 k~-~~L~l~GlhfH~GS~~~~~-~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~ 413 (522)
++ .+|++.|||+|+||+.... ..+.++++.+.++.+.+++.|++++++++||+.+..+.. +.-++.++....-|..
T Consensus 155 ~~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~~g~~~~~~~~g~s~g~~~~~--~~~~~~vR~G~~lyg~ 232 (386)
T 1vfs_A 155 QAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLP--ETHFDLVRTGLAVYGV 232 (386)
T ss_dssp HHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCG--GGCSSEEEECGGGGTC
T ss_pred HhCCCceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCHHHHcCc--cccCCEEEeChhhhCC
Confidence 66 5999999999999986422 235677888888888888889999999999987542211 0001111111111111
Q ss_pred CCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCC
Q psy9378 414 VEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNV 485 (522)
Q Consensus 414 ~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~ 485 (522)
.+...+..| +|+.+.++++|+|+|+.+|+..... .+ ....++..++.|+.+.+...+... .++++.
T Consensus 233 -~p~~~~~~~-~~~~l~pa~~l~a~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l~~~---~~v~i~- 306 (386)
T 1vfs_A 233 -SPSPELGTP-AQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR---GPVLVA- 306 (386)
T ss_dssp -CSCGGGCCT-TTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGGGTTT---CEEEET-
T ss_pred -Ccccccccc-cccCCceEEEEEEEEEEEEEcCCCCeEeeCCEEECCCCCEEEEEecccccCcccccCCC---CEEEEC-
Confidence 111111223 5888999999999999999864311 00 113678999999988887766432 222221
Q ss_pred CCCCCcceEEeeecCCCCCcc--------ccc-cCcEEEEe
Q psy9378 486 MDDSQVSLRSPLFLQESFLLS--------CLS-LFFCVLWL 517 (522)
Q Consensus 486 ~~~~~~~~~~~l~Gp~C~~~D--------~l~-~~~~~~~~ 517 (522)
..++.++|+.|+ | .+. .||.|.+.
T Consensus 307 ------g~~~~ivG~vcm--D~~~~dv~~~~~~~GD~v~l~ 339 (386)
T 1vfs_A 307 ------GKIRRAAGRIAM--DQFVVDLGEDLAEAGDEAVIL 339 (386)
T ss_dssp ------TEEEEBCSCCCS--SCEEEEEETCCCCTTCEEEEE
T ss_pred ------CEEeeEeeEeec--CcEEEEccCCCCCCCCEEEEE
Confidence 156889999995 5 457 89988864
No 23
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.94 E-value=4.1e-26 Score=240.10 Aligned_cols=282 Identities=14% Similarity=0.121 Sum_probs=213.0
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhC-CCCeEEeeecC----CCcHHHHHHHHHcCC-eEEEEc------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKL-PRVDPYYAVKC----NDSQMVLEVLAALGT-GFDCAS------------------ 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~l-p~~~i~YAvKA----N~~~~Vlk~L~~~G~-GfDvaS------------------ 264 (522)
..+|+++||+++|++|++.+++.+ ++++++|++|| +.++.|++.+.+.|+ +|+|+|
T Consensus 9 ~~~~~~~idl~ai~~N~~~l~~~~~~~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~~il~ 88 (391)
T 2vd8_A 9 YRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPILV 88 (391)
T ss_dssp CSSCEEEEEHHHHHHHHHHHHHHSCTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEEE
T ss_pred CCCeEEEEcHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCCceEE
Confidence 468999999999999999999999 58999999999 589999999999997 899999
Q ss_pred ---CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCc-CCCHHHHHHHHh
Q psy9378 265 ---KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDP-ISEAPRLLRLAK 336 (522)
Q Consensus 265 ---K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~-e~e~~~ll~~~k 336 (522)
+++++++.++++++ .+++||++++++|.+ + +..+|+|+|+++ .+|||+++ + ++.++++.++
T Consensus 89 ~g~~~~~~~~~~~~~~i-~~~vds~~~l~~l~~-a~~~~~~~~V~lkvdtG--------m~R~G~~~~~-e~~~~~~~i~ 157 (391)
T 2vd8_A 89 LGPSPPRDINVAAENDV-ALTVFQXEWVDEAIX-LWDGSSTMXYHINFDSG--------MGRIGIRERX-ELXGFLXSLE 157 (391)
T ss_dssp CSCCCGGGHHHHHHTTE-EEECCCHHHHHHHHH-HCCSSCCEEEEEEBCSS--------CCSSSBCCHH-HHHHHHHHHT
T ss_pred ecCCChHHHHHHHHCCe-EEEEcCHHHHHHHHH-HHhcCCceEEEEEEeCC--------CCCCCCCchh-hHHHHHHHHh
Confidence 77889999999999 499999999999987 4 335788888865 38999986 6 8999999887
Q ss_pred h-CCCeEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q psy9378 337 S-LDLDVVGVSFHVGSGCG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPV 414 (522)
Q Consensus 337 ~-~~L~l~GlhfH~GS~~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~ 414 (522)
+ .++++.|||+|++++.. +...+.++++.+.++.+.+++.|++++++++|++.+..+..+ .-++.++..+.-|..
T Consensus 158 ~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~gnS~g~~~~~~--~~~~~vR~G~~lyg~- 234 (391)
T 2vd8_A 158 GAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQG--ITFNAVRIGIAMYGL- 234 (391)
T ss_dssp TCTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTT--CCTTEEEESTTTTTC-
T ss_pred hcCCceEEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHhccCCcceEEecchhHhhcCcc--cCCCEEehhHHhcCC-
Confidence 6 59999999999999864 333466788888888888888898888999999875543211 111122222221211
Q ss_pred CCCcEEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCCC
Q psy9378 415 EEGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVM 486 (522)
Q Consensus 415 ~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~ 486 (522)
.+... ..||||+.+.++++|+|+|+.+|+..... .+ ....++..++.|+.+.+...+++. ++++.
T Consensus 235 ~p~~~-~~~~g~~~l~pa~~l~~~V~~vk~~~~G~~v~yg~~~~~~~~~~~a~v~~GyaDg~~r~l~~~----~v~v~-- 307 (391)
T 2vd8_A 235 SPSVE-IRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF----EVLVN-- 307 (391)
T ss_dssp CSCTT-TGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC----EEEET--
T ss_pred CCccc-cccccccccceeEEEEEEeeEEEEcCCCCeEeeCCEEEcCCCcEEEEEeeeeecccccccCCC----eEEEC--
Confidence 11111 25889999999999999999999864311 00 123578899999988888777652 33331
Q ss_pred CCCCcceEEeeecCCCCCc------cccccCcEEEE
Q psy9378 487 DDSQVSLRSPLFLQESFLL------SCLSLFFCVLW 516 (522)
Q Consensus 487 ~~~~~~~~~~l~Gp~C~~~------D~l~~~~~~~~ 516 (522)
..++.++|+.|+-. +.+..||.|.+
T Consensus 308 -----g~~~~ivG~vcmD~~~vd~~~~~~~GD~v~l 338 (391)
T 2vd8_A 308 -----GXRVPIVGRVTMDQFMIHLPCEVPLGTXVTL 338 (391)
T ss_dssp -----TEEEEEESCCCSSCEEEEESSCCCTTCEEEE
T ss_pred -----CeecceecceecceeEeecCCCCCCCCEEEE
Confidence 15688999999411 12456888775
No 24
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.93 E-value=2.3e-26 Score=241.36 Aligned_cols=283 Identities=12% Similarity=0.069 Sum_probs=204.6
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecC----CCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKC----NDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKA----N~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
...|+++||+++|++|++++++.+++++++|++|| |+++.|++.+.+.|+ +|+|+|
T Consensus 9 ~~~~~~~idl~~i~~N~~~l~~~~~~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~~Il~~ 88 (384)
T 1xfc_A 9 GLLAEAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAW 88 (384)
T ss_dssp --CEEEEEEHHHHHHHHHHHHHHHTTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCEEEC
T ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCEEEE
Confidence 45899999999999999999999999999999999 999999999999997 999999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCc---CCCHHHHHHHH
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDP---ISEAPRLLRLA 335 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~---e~e~~~ll~~~ 335 (522)
++.++++.|++.++ .+++||++++++|.+.+ +..+|+||||++ .+|||+++ + ++.++++.+
T Consensus 89 g~~~~~~~~~~~~~~i-~~~vds~~~l~~l~~~a~~~~~~~~V~l~vdtG--------~~R~G~~~~~~~-~~~~~~~~i 158 (384)
T 1xfc_A 89 LHPPGIDFGPALLADV-QVAVSSLRQLDELLHAVRRTGRTATVTVKVDTG--------LNRNGVGPAQFP-AMLTALRQA 158 (384)
T ss_dssp CCCTTCCCHHHHHTTC-EEEECSHHHHHHHHHHHHHHCCCEEEEEEBCSS--------CCSSSBCTTTHH-HHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCc-EEEECCHHHHHHHHHHHHhcCCceEEEEEEECC--------CCccCCCcCcHH-HHHHHHHHH
Confidence 66778999999999 59999999999998764 456899999876 38999998 7 888999988
Q ss_pred hh-CCCeEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCC
Q psy9378 336 KS-LDLDVVGVSFHVGSGCG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFP 413 (522)
Q Consensus 336 k~-~~L~l~GlhfH~GS~~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~ 413 (522)
++ .+|++.|||+|+||+.. +...+.++++.+.++++.+++.|++++++++||+.+..+.. +..++.++..+.-| .
T Consensus 159 ~~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~g~s~~~~~~~--~~~~~~vR~G~~ly-g 235 (384)
T 1xfc_A 159 MAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARP--DLTFDLVRPGIAVY-G 235 (384)
T ss_dssp HHTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCG--GGCCSEECCSGGGG-T
T ss_pred HhCCCCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCHHHhcCc--cccCCEEccCHHhH-C
Confidence 76 59999999999999864 33456678888888888888889999999999987543211 00011111111111 1
Q ss_pred CCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCC
Q psy9378 414 VEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNV 485 (522)
Q Consensus 414 ~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~ 485 (522)
..+...+ +| +.+++|++++++|+.+|+..... .+ ....++..++.|+.+.+...+.. .. +++..
T Consensus 236 ~~~~~~~-~e---~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l~~-~~--~v~~~- 307 (384)
T 1xfc_A 236 LSPVPAL-GD---MGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGG-RL--EVLIN- 307 (384)
T ss_dssp CCSSGGG-CC---TTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCGGGTT-TC--EEEET-
T ss_pred CCccccc-cc---CCCceEEEEEEEEEEEEEcCCCCEEEeCCEEECCCCCEEEEEeeccccCcccccCC-CC--eEEEC-
Confidence 0111111 23 45899999999999999864311 00 11367888999998887665522 11 22211
Q ss_pred CCCCCcceEEeeecCCCCCc--------c-ccccCcEEEEec
Q psy9378 486 MDDSQVSLRSPLFLQESFLL--------S-CLSLFFCVLWLC 518 (522)
Q Consensus 486 ~~~~~~~~~~~l~Gp~C~~~--------D-~l~~~~~~~~~~ 518 (522)
..++.++|+.|+-. . .+..||.|.+..
T Consensus 308 ------g~~~~ivG~vcmD~~~~d~~~~p~~~~~GD~v~l~g 343 (384)
T 1xfc_A 308 ------GRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFG 343 (384)
T ss_dssp ------TEEEEEESCCCSSCEEEEEESSSCCCCTTCEEEEEC
T ss_pred ------CEEeeEeeEeccceEEEEccCCCCCCCCCCEEEEEe
Confidence 25789999999721 1 245688888643
No 25
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.92 E-value=4.5e-25 Score=232.05 Aligned_cols=278 Identities=13% Similarity=0.084 Sum_probs=202.5
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCC-eEEeeecC----CCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRV-DPYYAVKC----NDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~-~i~YAvKA----N~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
.+|+++||+++|++|++++++.++++ +++|++|| |.++.|++.+.+.|+ +|+|+|
T Consensus 6 ~~~~~~idl~ai~~N~~~l~~~~~~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~~Il~~ 85 (388)
T 1bd0_A 6 RDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVL 85 (388)
T ss_dssp SSEEEEEEHHHHHHHHHHHHHHSCTTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEEEC
T ss_pred CceEEEEcHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCCCEEEE
Confidence 47999999999999999999999999 99999999 889999999999997 999999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC---CCCeEEEEEeeCCCcccCCCCCccccCc-CCCHHHHHHHHhh-
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH---PTAQLVIRIRCDAEVAQCQLGMKFGCDP-ISEAPRLLRLAKS- 337 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~---~~~~V~LRIn~~~~~~~~~~~sKFGi~~-e~e~~~ll~~~k~- 337 (522)
+++++++.++++++ .+++||++++++|.+.+ +..+|+|+||++ .+|||+++ + ++.++++.+++
T Consensus 86 g~~~~~~~~~~~~~~i-~~~vds~~~l~~l~~~a~~~~~~~V~lkvdtG--------m~R~G~~~~~-e~~~~~~~i~~~ 155 (388)
T 1bd0_A 86 GASRPADAALAAQQRI-ALTVFRSDWLEEASALYSGPFPIHFHLKMDTG--------MGRLGVKDEE-ETKRIVALIERH 155 (388)
T ss_dssp SCCCGGGHHHHHHTTE-EEEECCHHHHHHHHHHCCCSSCEEEEEEBCSS--------SCSSSBCSHH-HHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcCC-EEEECCHHHHHHHHHHhccCCCeEEEEEEcCC--------CCcCCCCCHH-HHHHHHHHHHhC
Confidence 77889999999998 49999999999999875 335788888876 38999987 6 89999998876
Q ss_pred CCCeEEEEEEecCCCCCChH-HHHHHHHHHHHHHHHHhhc-CCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q psy9378 338 LDLDVVGVSFHVGSGCGDPP-VFGRAIYSARQIFDLGNSL-GFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVE 415 (522)
Q Consensus 338 ~~L~l~GlhfH~GS~~~~~~-~~~~ai~~~~~l~~~~~~~-G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~ 415 (522)
.+|++.|||+|+||+....+ .+.++++.+. .+++. |++++++++||+.+..+..+ .-++.++..+.-| ...
T Consensus 156 ~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~----~l~~~~g~~~~~~~~g~S~~~~~~~~--~~~~~vR~G~~ly-G~~ 228 (388)
T 1bd0_A 156 PHFVLEGLYTHFATADEVNTDYFSYQYTRFL----HMLEWLPSRPPLVHCANSAASLRFPD--RTFNMVRFGIAMY-GLA 228 (388)
T ss_dssp TTEEEEEEECCCSSTTSSCCHHHHHHHHHHH----HHHTTCSSCCSEEECCCHHHHHHCTT--SCTTEEEECGGGG-TCC
T ss_pred CCceEEEEEEccCCCCCCCcHHHHHHHHHHH----HHHhhcCCCCCeEEecCCHHHhcCcc--cCCCEEehhHHHH-CCC
Confidence 69999999999999865322 2333333332 25555 88889999999875432111 0111222222222 101
Q ss_pred CCcEEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCCCC
Q psy9378 416 EGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMD 487 (522)
Q Consensus 416 ~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~ 487 (522)
+..++.+|| |+.+.++++|+++|+.+|+..... .+ ....++..++.|+.+.+...+++. ++++.
T Consensus 229 p~~~~~~~~-~~~l~pa~~l~~~V~~vk~~~~G~~v~Yg~~~~~~~~~~~a~v~~GyaDg~~r~l~~~----~v~v~--- 300 (388)
T 1bd0_A 229 PSPGIKPLL-PYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF----HVLVD--- 300 (388)
T ss_dssp SCGGGGGGC-SSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCGGGGGC----EEEET---
T ss_pred ccccccccc-ccCcceEEEEEEEEEEEEEcCCCCeEecCCeEECCCCcEEEEEeeeeccCccccccCC----cEeEC---
Confidence 111222355 788999999999999999864311 00 123578889999988888777652 33332
Q ss_pred CCCcceEEeeecCCCCCc------cccccCcEEEE
Q psy9378 488 DSQVSLRSPLFLQESFLL------SCLSLFFCVLW 516 (522)
Q Consensus 488 ~~~~~~~~~l~Gp~C~~~------D~l~~~~~~~~ 516 (522)
..++.++|+.|+-. +.+..||.|.+
T Consensus 301 ----g~~~~ivG~vcmD~~~vdv~~~~~~GD~v~l 331 (388)
T 1bd0_A 301 ----GQKAPIVGRICMDQCMIRLPGPLPVGTKVTL 331 (388)
T ss_dssp ----TEEEEEESCCCSSCEEEECSSCCCTTCEEEE
T ss_pred ----CEEeeEEeecccceEEEECCCCCCCCCEEEE
Confidence 14688999999521 12456888775
No 26
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.92 E-value=1.8e-25 Score=233.48 Aligned_cols=238 Identities=12% Similarity=0.066 Sum_probs=183.7
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
++++||+++||+++|++|++++++.++ +++++|++|||+++.|++.+.+.|+ ||+|+|
T Consensus 8 ~~~~tP~~~idl~~l~~N~~~l~~~~~~~~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~ii~~~ 87 (376)
T 3anu_A 8 DTLPTPALTIDRTTARRNAERMRERCRALGVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFDDILLAY 87 (376)
T ss_dssp GGSCSSEEEEEHHHHHHHHHHHHHHHHHHTCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCceEEEeHHHHHHHHHHHHHHHHHcCCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCCeEEEEC
Confidence 567899999999999999999999987 8999999999999999999999997 999999
Q ss_pred --CCHHHHHHHHH-----cCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccCcCCC--HHHH
Q psy9378 265 --KPISHIRYAAE-----YGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDPISE--APRL 331 (522)
Q Consensus 265 --K~~~eL~~A~~-----~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e--~~~l 331 (522)
+ +++++.+++ .++ .+++||++++++|.+.++ ..+|+||||++ .+|||++++ + +.++
T Consensus 88 ~~~-~~~l~~~~~l~~~~~~i-~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~g--------~~R~G~~~~-~~~~~~l 156 (376)
T 3anu_A 88 PVP-TARLEECAGLARRLDAF-HVLLDRPEALASLRQRPLGHGKRWLVWLKLDCG--------NGRAGVRPT-DPAALEL 156 (376)
T ss_dssp ECC-GGGHHHHHHHHHHSSCE-EEEECCHHHHHHHHTSCCCTTCCEEEEEEECCC----------CSSBCTT-SHHHHHH
T ss_pred CCc-HHHHHHHHHHHhcCCcE-EEEeCCHHHHHHHHHHHHhCCCceEEEEEECCC--------CCcCCCCCC-chhHHHH
Confidence 6 788999888 788 499999999999998764 35788888876 389999998 8 8999
Q ss_pred HHHHhhC---CCeEEEEEEecCCC-C-CChH---HHH-HHHHHHHHHHHHHhhcCCCccEEEEcCCCC-CCCCCCHHHHH
Q psy9378 332 LRLAKSL---DLDVVGVSFHVGSG-C-GDPP---VFG-RAIYSARQIFDLGNSLGFSMRVLDLGGGYP-GYTGYSMNRIA 401 (522)
Q Consensus 332 l~~~k~~---~L~l~GlhfH~GS~-~-~~~~---~~~-~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~-~~~~~~~~~~a 401 (522)
++.+++. ++++.|||+|.||. . .+.. .+. ++++.+.++++.+++.|++++++++||+.+ ..+..+. ...
T Consensus 157 ~~~i~~~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~Ggs~~~~~~~~~~-~~~ 235 (376)
T 3anu_A 157 AQAIANDAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQAGVPCPQASIGSTPSCSHPIPEM-SQL 235 (376)
T ss_dssp HHHHHHSCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHSCCGGG-GGS
T ss_pred HHHHhCCCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEccCHHHhhhhhhc-CCc
Confidence 9888667 89999999999983 2 2332 344 367888888888888899999999999975 4321110 001
Q ss_pred HHHHHHHHhhCCCCCCcEEEecCc-ceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchh
Q psy9378 402 EIINVALDEYFPVEEGVSIIAEPG-RYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNC 470 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~EPG-R~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~ 470 (522)
..++....-|+. .. ..++| |+.+.+|++++++|+++|...+ ++++|+|++...++
T Consensus 236 ~~vr~G~~l~~~---~~--~~~~~~~~~~~~a~~l~a~Vi~vk~~~g---------~~v~dgG~~~~~~~ 291 (376)
T 3anu_A 236 TELHPGNYIFYD---LQ--QTQLGSCQPQDVAIRVLTRVIGHYAHRG---------QLLVDCGWAALSLH 291 (376)
T ss_dssp SEECCCGGGTCC---HH--HHHHTSSCGGGCCEEEEEEEEEEETTTT---------EEEESCCHHHHCST
T ss_pred eEeccceEEEec---cc--cccccCCCcCceEEEEEEEEEeeeCCCC---------eEEEeCCCccccCC
Confidence 111111111111 01 12455 6788999999999999997433 68899999886665
No 27
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.89 E-value=2.9e-23 Score=217.60 Aligned_cols=279 Identities=11% Similarity=0.051 Sum_probs=191.3
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecC----CCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKC----NDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKA----N~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
..+|+++||+++|++|++++++.+++++++|++|| +.++.|++.+.+.|+ +|+|+|
T Consensus 7 ~~~~~~~idl~~l~~N~~~l~~~~~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~~il~~ 86 (380)
T 3co8_A 7 HRSTRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFILIL 86 (380)
T ss_dssp TSSCEEEECHHHHHHHHHHHHHHHCCSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCEEEC
T ss_pred cCCeEEEEcHHHHHHHHHHHHHhCCCcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCCCEEEE
Confidence 35899999999999999999999999999999999 679999999999997 899999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC--CCeEEEEEeeCCCcccCCCCCccccC-cCCCHHHHHHHHhh--
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP--TAQLVIRIRCDAEVAQCQLGMKFGCD-PISEAPRLLRLAKS-- 337 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~--~~~V~LRIn~~~~~~~~~~~sKFGi~-~e~e~~~ll~~~k~-- 337 (522)
+++++++.+++.++ .+++||+++++.|.+.++ ..+|+|+|+++ .+|||++ ++ ++.++++.+++
T Consensus 87 g~~~~~~~~~~~~~~i-~~~vds~~~l~~l~~~a~~~~~~V~l~vdtG--------~~R~G~~~~e-e~~~~~~~i~~~~ 156 (380)
T 3co8_A 87 GPIDVKYAPIASKYHF-LTTVSSLDWLKSADKILGKEKLSVNLAVDTG--------MNRIGVRSKK-DLKDEIEFLQEHS 156 (380)
T ss_dssp SCCCGGGHHHHHHTTC-EEEECCHHHHHHHHHHCTTCCEEEEEEBCSS--------SCSSSBCSHH-HHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHhcccCCceEEEEEcCC--------CCCCCCCCHH-HHHHHHHHHHhhC
Confidence 67789999999998 499999999999998665 45677877765 3899998 87 89999998876
Q ss_pred CCCeEEEEEEecCCCCCChHH-HHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCH-HHHHHHHHHHHHhhCCCC
Q psy9378 338 LDLDVVGVSFHVGSGCGDPPV-FGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSM-NRIAEIINVALDEYFPVE 415 (522)
Q Consensus 338 ~~L~l~GlhfH~GS~~~~~~~-~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~-~~~a~~I~~~l~~~~~~~ 415 (522)
.+|++.|||+|+|++....+. +.++++.+.++.+ . +..+.++.+|++.+..+..+. .+.++.++.... .+...
T Consensus 157 ~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~~~~---~-~~~~~~~~~~nS~g~~~~~~~~~~~~~~vR~G~~-lyG~~ 231 (380)
T 3co8_A 157 DHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELID---G-LIMPRYVHVMNSGAAMYHSKELPGCNSIARVGTV-VYGVE 231 (380)
T ss_dssp TTEEEEEEECCCC---------CHHHHHHHHHHHT---T-SCCCSEEECBCHHHHHHCGGGCTTSCSEEEESTT-TTTCC
T ss_pred CCceEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHh---c-cCCCCcEEEeCCHHHhcCcccccCCCceEcccHh-hhCcC
Confidence 599999999999998643322 2445554444332 2 223456777665322110000 000011111000 01100
Q ss_pred CCcEEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCCCC
Q psy9378 416 EGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMD 487 (522)
Q Consensus 416 ~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~ 487 (522)
+...+ .|| ++.+.++++++|+|+.+|+..... .+ ....++..++.|+.+.+...+ +. + +++++
T Consensus 232 p~~~~-~~~-~~~l~pa~~l~a~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l-~~-~--~v~i~--- 302 (380)
T 3co8_A 232 PSEGV-LGP-IDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEY-QD-F--QLLID--- 302 (380)
T ss_dssp TTTTS-SSC-GGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGG-TT-C--EEEET---
T ss_pred CCccc-ccc-ccCcceeEEEEEEEEEEEEcCCCCeEeeCCEEECCCCCEEEEEecCccccccccc-CC-C--eEEEC---
Confidence 11111 255 788999999999999999864211 00 123678999999988887777 43 2 22222
Q ss_pred CCCcceEEeeecCCCCCcc--------ccccCcEEEEe
Q psy9378 488 DSQVSLRSPLFLQESFLLS--------CLSLFFCVLWL 517 (522)
Q Consensus 488 ~~~~~~~~~l~Gp~C~~~D--------~l~~~~~~~~~ 517 (522)
..++.++|+.|+ | .+..||.|.+.
T Consensus 303 ----g~~~~ivG~vcm--D~~~vdv~~~~~~GD~v~l~ 334 (380)
T 3co8_A 303 ----GQKCRQVGQIAM--DQMMVALPHEYPIGTEVTLI 334 (380)
T ss_dssp ----TEEEEEESCCCS--SCEEEEESSCCCTTCEEEEE
T ss_pred ----CEEeEEeccccc--ceEEEECCCCCCCCCEEEEE
Confidence 146789999996 4 34568888764
No 28
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.83 E-value=4.3e-19 Score=188.76 Aligned_cols=233 Identities=16% Similarity=0.086 Sum_probs=179.2
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
++++||+++||+++|++|++++++.++ ++++++++|||.++.|++.+.+.|+ ||+|+|
T Consensus 42 ~~~~tP~~viDl~al~~N~~~l~~~~~~~gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi~~ill~~ 121 (426)
T 3gwq_A 42 EDVSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLMAN 121 (426)
T ss_dssp TCBCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEEEECS
T ss_pred ccCCCCeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCCCeEEEEC
Confidence 678999999999999999999999884 7999999999999999999999996 999999
Q ss_pred --CCHHHHHHHHHc----CCC-EEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCc-CCCHHHHH
Q psy9378 265 --KPISHIRYAAEY----GID-TMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDP-ISEAPRLL 332 (522)
Q Consensus 265 --K~~~eL~~A~~~----Gv~-~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~-e~e~~~ll 332 (522)
..+++++.+.+. ++. .+++||+++++.|.+.+ +..+|+|+||++ .+|+|+.+ + ++.+++
T Consensus 122 ~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~l~VdtG--------~~R~Gv~~~~-e~~~l~ 192 (426)
T 3gwq_A 122 QLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP--------GGRTGVRDAA-QRNAVL 192 (426)
T ss_dssp CCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT--------TSSSSBCSHH-HHHHHH
T ss_pred CcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCCeeEEEEEeCCC--------CCcCCCCCHH-HHHHHH
Confidence 346777766532 333 47899999999998764 357899999876 37999985 6 899999
Q ss_pred HHHhh-C-CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCC---CccEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy9378 333 RLAKS-L-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGF---SMRVLDLGGGYPGYTGYSMNRIAEIINVA 407 (522)
Q Consensus 333 ~~~k~-~-~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~---~l~~LdIGGGf~~~~~~~~~~~a~~I~~~ 407 (522)
+.+++ . +|++.||++|.|+.. +.+.+.++++++.++++.+++.|+ ++.+|++||. .+++..++.+..
T Consensus 193 ~~i~~~~~~l~l~Gl~th~g~~~-~~~~~~~~~~~l~~l~~~L~~~g~~~~~~~~lS~G~S------~~~~~a~~~~~~- 264 (426)
T 3gwq_A 193 EAITRYPDTLKLAGVELYEGVLK-EEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGS------AWYDVVAEEFVK- 264 (426)
T ss_dssp HHHHTSTTTEEEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCS------TTHHHHHHHTHH-
T ss_pred HHHHcCCCCEEEEeEEEEccccC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCC------hhHHHHHhhhhc-
Confidence 98876 5 899999999999964 677778888888899888888886 8999999874 234443332211
Q ss_pred HHhhCCCCCCcEEEecCcceeecc---------------------------ceeEEEEEEEEEeeCCCCCCCCceEEEEE
Q psy9378 408 LDEYFPVEEGVSIIAEPGRYYVAS---------------------------AFTLATLIHSKRDILGANSSVPTHTMYYI 460 (522)
Q Consensus 408 l~~~~~~~~~~~li~EPGR~lva~---------------------------ag~Lvt~V~~~K~~~~~~~g~~~~~~~~v 460 (522)
+.. + ......+-+|.|+..+ |..++++|+++ ..+ ..+++
T Consensus 265 ~~~--~--~~g~t~vR~Gs~if~d~~~y~~~q~~~~~~~~~~~~~~~~~~~Al~v~a~Vis~-p~~---------~~aiv 330 (426)
T 3gwq_A 265 ASE--T--GKVEVVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSI-PEP---------DRAII 330 (426)
T ss_dssp HHH--S--SSEEEEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEE-EET---------TEEEE
T ss_pred ccc--C--CCcCEEEecceEEEcChHHHHHhhhhhcccCccccccCCccceeeEEEEEEecc-cCC---------CEEEE
Confidence 111 1 1234566777766543 55678999983 222 36899
Q ss_pred cCCCcCcchh
Q psy9378 461 NDGVYGSFNC 470 (522)
Q Consensus 461 d~G~~~~~~~ 470 (522)
|.|....-.+
T Consensus 331 d~G~~~~s~d 340 (426)
T 3gwq_A 331 GLGKRDSAFD 340 (426)
T ss_dssp SCCTTTSCGG
T ss_pred CCCccccccC
Confidence 9998766433
No 29
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.82 E-value=9.2e-21 Score=196.78 Aligned_cols=275 Identities=10% Similarity=0.000 Sum_probs=185.2
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecC----CCcHHHHHHHHHcCCeEEEEc----------------------
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKC----NDSQMVLEVLAALGTGFDCAS---------------------- 264 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKA----N~~~~Vlk~L~~~G~GfDvaS---------------------- 264 (522)
.|.++||+++|++|++++++. ++++++|++|| ++++.|++.+.+.+.+|+|+|
T Consensus 3 ~~~~~idl~~l~~N~~~l~~~-~~~~l~~vvKanaYG~g~~~i~~~l~~~~~~~~va~~~Ea~~~~~~G~~~~Il~~~g~ 81 (357)
T 1rcq_A 3 PARALIDLQALRHNYRLAREA-TGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEGF 81 (357)
T ss_dssp CCEEEEEHHHHHHHHHHHHHH-HCSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCSCEEETTCC
T ss_pred ceEEEEeHHHHHHHHHHHHhC-CCCeEEEEEEeccccCCHHHHHHHHHHhCCEEEEccHHHHHHHHhCCcCCCEEEEeCC
Confidence 689999999999999999998 88999999999 789999999977677999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhh--CCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCe
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQF--HPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLD 341 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~--~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~ 341 (522)
+++++++.+++.++ .+++||+++++.|.+. .+..+|+|+||++ .+|||++++ ++.++++.+++ .+++
T Consensus 82 ~~~~~~~~~~~~~i-~~~vds~~~l~~l~~a~~~~~~~V~l~vdtG--------~~R~G~~~~-~~~~~~~~i~~~~~l~ 151 (357)
T 1rcq_A 82 FEASELELIVAHDF-WCVVHCAWQLEAIERASLARPLNVWLKMDSG--------MHRVGFFPE-DFRAAHERLRASGKVA 151 (357)
T ss_dssp SSGGGHHHHHHTTE-EEEECSHHHHHHHHHCCCSSCEEEEEEBCSS--------SCSSSBCHH-HHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHcCC-EEEECCHHHHHHHHhhccCCCeEEEEEEcCC--------CCCCCCCHH-HHHHHHHHHHhCCCCc
Confidence 67789999999998 5999999999999872 1335799999876 389999998 89999998876 5999
Q ss_pred EEEEEEecCCCCCChHHH-HHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEE
Q psy9378 342 VVGVSFHVGSGCGDPPVF-GRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSI 420 (522)
Q Consensus 342 l~GlhfH~GS~~~~~~~~-~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~l 420 (522)
+.|||+|++++....+.+ .++++.+.++. +....++...|-||++..... .++.++....-| ...+...+
T Consensus 152 l~Gl~th~~~~~~~~~~~~~~~~~~f~~~~---~~l~~~~s~~ns~~~~~~~~~-----~~~~vR~G~~ly-g~~~~~~~ 222 (357)
T 1rcq_A 152 KIVMMSHFSRADELDCPRTEEQLAAFSAAS---QGLEGEISLRNSPAVLGWPKV-----PSDWVRPGILLY-GATPFERA 222 (357)
T ss_dssp EEEEECCCSSTTCTTCTHHHHHHHHHHHHH---TTCCSCEECCCHHHHHHCTTS-----CCSEECCCGGGG-TCCSSSSC
T ss_pred EEEEEEcccCCCCCCcHHHHHHHHHHHHHH---hccCCCeEEEeCHHhhcCccc-----CCCEEccCHHhh-CCCccccc
Confidence 999999999986433223 34555544443 233222222333333211110 001111111111 10011111
Q ss_pred EecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcc
Q psy9378 421 IAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVS 492 (522)
Q Consensus 421 i~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~ 492 (522)
.++ ++.+.++++++|+|+.+|+..... .+ ....++..++.|+.+.+...+.. .+ ++++. .
T Consensus 223 -~~~-~~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~dg~~r~l~~-~~--~v~i~-------g 290 (357)
T 1rcq_A 223 -HPL-ADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAAD-GT--LVFID-------G 290 (357)
T ss_dssp -CTT-GGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCCT-TC--EEEET-------T
T ss_pred -ccc-cCCCceEEEEEEEEEEEEEcCCCCEEccCCeEECCCCeEEEEEEeccccCcccccCC-CC--EEEEC-------C
Confidence 244 678999999999999999864211 01 01256788888887776665521 11 22221 1
Q ss_pred eEEeeecCCCCCc---c-----ccccCcEEEEe
Q psy9378 493 LRSPLFLQESFLL---S-----CLSLFFCVLWL 517 (522)
Q Consensus 493 ~~~~l~Gp~C~~~---D-----~l~~~~~~~~~ 517 (522)
.+..++|+.|+.. | .+..||.|.+.
T Consensus 291 ~~~~ivG~vcmD~~~vd~~~~~~~~~GD~v~l~ 323 (357)
T 1rcq_A 291 KPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELW 323 (357)
T ss_dssp EEEEBCSCCCSSCEEEECTTCTTCCTTCEEEEE
T ss_pred EEeEEeeEEecceEEEECCCCCCCCCCCEEEEE
Confidence 4678999999732 1 24467877663
No 30
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.81 E-value=7.7e-19 Score=184.03 Aligned_cols=276 Identities=9% Similarity=0.031 Sum_probs=186.3
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecC----CCcHHHHHHHHHcCCeEEEEc---------------------
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKC----NDSQMVLEVLAALGTGFDCAS--------------------- 264 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKA----N~~~~Vlk~L~~~G~GfDvaS--------------------- 264 (522)
++|++++|+++|++|++++++.+++++++|++|| +..+.|++.+.+ +.+|+|+|
T Consensus 22 ~~p~~~idl~al~~N~~~l~~~~~~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~~Il~~~g 100 (379)
T 2rjg_A 22 QAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPVLLLEG 100 (379)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHSTTSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCEEETTC
T ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCCCEEEEEC
Confidence 6999999999999999999999999999999999 899999999988 88999999
Q ss_pred -CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhh--CCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CC-
Q psy9378 265 -KPISHIRYAAEYGIDTMTFDNEIELQKVKQF--HPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LD- 339 (522)
Q Consensus 265 -K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~--~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~- 339 (522)
+++++++.+++.++ .+++||+++++.|.+. .+..+|+|+||++ .+|||++++ ++.++++.+++ .+
T Consensus 101 ~~~~~~~~~~~~~~i-~~~vds~~~l~~l~~a~~~~~~~V~l~vdtG--------m~R~G~~~~-e~~~~~~~i~~~~~~ 170 (379)
T 2rjg_A 101 FFDARDLPTISAQHF-HTAVHNEEQLAALEEASLDEPVTVWMKLDTG--------MHRLGVRPE-QAEAFYHRLTQCKNV 170 (379)
T ss_dssp CSCGGGHHHHHHTTE-EEEECSHHHHHHHHHCCCSSCBCEEEEBCSS--------CCSSSBCHH-HHHHHHHHHTTCSSB
T ss_pred CCCHHHHHHHHHcCc-EEEECCHHHHHHHHhhCCCCCeEEEEEECCC--------CCccCCCHH-HHHHHHHHHHhCCCc
Confidence 67789999999998 4999999999999872 1336899999976 389999998 99999998876 58
Q ss_pred CeEEEEEEecCCCCCCh-HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCc
Q psy9378 340 LDVVGVSFHVGSGCGDP-PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGV 418 (522)
Q Consensus 340 L~l~GlhfH~GS~~~~~-~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~ 418 (522)
|++.|||+|++++.... ..+.++++.+.++. +... .+ +++|+..+..... +.-...++....-| ...+..
T Consensus 171 l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~---~~l~--~~-~s~gnS~~~~~~~--~~~~~~vR~G~~ly-G~~p~~ 241 (379)
T 2rjg_A 171 RQPVNIVSHFARADEPKCGATEKQLAIFNTFC---EGKP--GQ-RSIAASGGILLWP--QSHFDWVRPGIILY-GVSPLE 241 (379)
T ss_dssp CSSCEEECCCSSTTCTTSTHHHHHHHHHHHHH---TTCC--SC-EECCCHHHHHHCG--GGCSSEECCCGGGG-TCCSSS
T ss_pred EEEEEEEEECCccCCCCcHHHHHHHHHHHHHH---hccC--CC-eEEEECcchhcCc--ccCCCEECccHHHH-CCCccc
Confidence 99999999999986533 23344555544433 2222 23 6766643211000 00000011001111 000000
Q ss_pred EEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCC
Q psy9378 419 SIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQ 490 (522)
Q Consensus 419 ~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~ 490 (522)
.+..++ +....+++++.++|+.+|+..... .+ ....++..+..|..+.+...+... .++++
T Consensus 242 ~~~~~~-~~~l~pa~~l~a~Vi~vk~~~~G~~v~yg~~~~~~~~~~ia~v~~GyaDG~~r~l~~~---~~v~i------- 310 (379)
T 2rjg_A 242 DRSTGA-DFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSG---TPVLV------- 310 (379)
T ss_dssp SSCCGG-GGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCTTCCTT---CEEEE-------
T ss_pred cccccc-ccCCceEEEEEEEEEEEEEcCCCCEEeeCCEEECCCCcEEEEEeeecccCcccccCCC---cEEEE-------
Confidence 100122 466899999999999999875211 00 113567888888777665544321 12221
Q ss_pred cceEEeeecCCCCCc---c-----ccccCcEEEE
Q psy9378 491 VSLRSPLFLQESFLL---S-----CLSLFFCVLW 516 (522)
Q Consensus 491 ~~~~~~l~Gp~C~~~---D-----~l~~~~~~~~ 516 (522)
...+..++|+.|+-. | .+..||.|.+
T Consensus 311 ~g~~~~ivG~vcmD~~~vdv~~~~~~~~GD~v~l 344 (379)
T 2rjg_A 311 NGREVPIVGRVAMDMICVDLGPQAQDKAGDPVIL 344 (379)
T ss_dssp TTEEEEBCSCCCSSCEEEECCTTCCCCTTCEEEE
T ss_pred CCEEeeEeeeeccccEEEECCCCCCCCCCCEEEE
Confidence 114678999999632 1 2446887765
No 31
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.81 E-value=3e-19 Score=186.81 Aligned_cols=224 Identities=11% Similarity=0.098 Sum_probs=169.4
Q ss_pred ccCCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc-----------------
Q psy9378 205 NVGMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS----------------- 264 (522)
Q Consensus 205 ~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS----------------- 264 (522)
.+++++||++++|+++|++|++++++.++ ++++++++|||.++.|++.+.+.|+ +|.|++
T Consensus 8 ~~~~~~tP~~~idl~al~~N~~~l~~~~~~~~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~Gi~~~il 87 (376)
T 3llx_A 8 WIAHPDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLLY 87 (376)
T ss_dssp GGGSSCSSEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEEE
T ss_pred ChhhCCCcEEEEcHHHHHHHHHHHHHHHHhCCCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhCCCCcEEE
Confidence 34678999999999999999999999885 8999999999999999999999997 999999
Q ss_pred ---CCHHHHHHHH-----HcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCC--HHH
Q psy9378 265 ---KPISHIRYAA-----EYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISE--APR 330 (522)
Q Consensus 265 ---K~~~eL~~A~-----~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e--~~~ 330 (522)
..+++++.++ +.++ .++|||+++++.|.+.+ +..+|+|+|+++. +|+|+.++ + +.+
T Consensus 88 ~~~~~~~~~~~~~~l~~~~~~l-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~vdtG~--------~R~G~~~~-~~~l~~ 157 (376)
T 3llx_A 88 AVGIAPAKLKRVAALRQQGINL-HILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDD--------HRGGIKPS-DSKLLT 157 (376)
T ss_dssp EEECCGGGHHHHHHHHHTTCEE-EEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSS--------SSSCBCTT-CTHHHH
T ss_pred eCCCCHHHHHHHHHhhccCCeE-EEEECCHHHHHHHHHHHHhcCCceEEEEEECCCC--------CCCCCCCc-hHHHHH
Confidence 2256777776 3455 48899999999998764 4578999998763 79999997 6 566
Q ss_pred HHHHHhhCCCeEEEEEEecCCCCC-C-h----HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHH
Q psy9378 331 LLRLAKSLDLDVVGVSFHVGSGCG-D-P----PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEII 404 (522)
Q Consensus 331 ll~~~k~~~L~l~GlhfH~GS~~~-~-~----~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I 404 (522)
+++.+ ++++.||++|.|+... + + ..+.++++.+.++.+.+++.|+++.++++||+.....
T Consensus 158 ~~~~l---~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~~~~~vs~g~S~~~~~----------- 223 (376)
T 3llx_A 158 IAKTL---GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHF----------- 223 (376)
T ss_dssp HHHHH---GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHH-----------
T ss_pred HHHHh---CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCChhhhh-----------
Confidence 65555 8999999999999753 2 2 2346677778888888888899999999999742110
Q ss_pred HHHHHhhCCCCCCcEEEecCcceee--------------ccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcch
Q psy9378 405 NVALDEYFPVEEGVSIIAEPGRYYV--------------ASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFN 469 (522)
Q Consensus 405 ~~~l~~~~~~~~~~~li~EPGR~lv--------------a~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~ 469 (522)
.+ ...-.-++-||.++. ..|..+.++|++++...+ ..++|+|......
T Consensus 224 -------~~-~~~~~~~vR~G~~lyg~~~~~~~~~~~~~~pa~~l~a~Vis~~~~~g---------~~i~d~G~~~~~~ 285 (376)
T 3llx_A 224 -------GE-DFSDISEVRAGVYTTFDLVMKNIGVCDFSHIAMSVVTTVIGHNKEKN---------WLLTDSGWMALSR 285 (376)
T ss_dssp -------CS-CCTTCSEECCCGGGTCCHHHHHHTSCCGGGCCEEEEEEEEEEETTTT---------EEEESCCHHHHCS
T ss_pred -------hh-hcCCccEeccceEEeccHhHhhcCCCCcCCeeEEEEEEEEeeeCCCC---------eEEEccCccceec
Confidence 00 000011334444332 369999999999997433 5778998765543
No 32
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.79 E-value=2.3e-17 Score=172.59 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=194.1
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCC----CcHHHHHHHHHcCC-eEEEEc--------------------
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCN----DSQMVLEVLAALGT-GFDCAS-------------------- 264 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN----~~~~Vlk~L~~~G~-GfDvaS-------------------- 264 (522)
....++|+++|++|++.+++.++ ++++++++||| ..+.|++.+.+.|+ +|.|++
T Consensus 6 ~~~l~Idl~al~~N~~~l~~~~~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~ilvlg 85 (374)
T 4ecl_A 6 RAYLEINLNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGISSEILILG 85 (374)
T ss_dssp SEEEEECHHHHHHHHHHHHHTSCTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEEECS
T ss_pred cEEEEEcHHHHHHHHHHHHHhcCCCCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCCCCCEEEEe
Confidence 34688999999999999999885 79999999996 89999999999997 899999
Q ss_pred -CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeE
Q psy9378 265 -KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDV 342 (522)
Q Consensus 265 -K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l 342 (522)
.++++++.+++.++. +++||+++++.|.+..+..+|+|+||+++ +|||+. + ++.++++.+++ .+|++
T Consensus 86 ~~~~~~~~~~~~~~i~-~~v~s~~~l~~l~~~~~~~~v~lkvdtGm--------~R~G~~-~-e~~~~~~~i~~~~~l~l 154 (374)
T 4ecl_A 86 YTSPSRAKELCKYELT-QTLIDYRYSLLLNKQGYDIKAHIKIDTGM--------HRLGFS-T-EDKDKILAAFSLKHIKV 154 (374)
T ss_dssp CCCGGGHHHHHHTTCE-EEECCHHHHHHHHTTCCCEEEEEEEESSS--------CSSSEE-S-SCHHHHHHHTTCTTEEE
T ss_pred CCCHHHHHHHHHCCCE-EEECCHHHHHHHHhcCCCccEEEEEcCCC--------CcCccC-H-HHHHHHHHHHhCCCceE
Confidence 456789999999984 99999999999998855678999999763 799999 7 89999988876 59999
Q ss_pred EEEEEecCCCCC----ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCc
Q psy9378 343 VGVSFHVGSGCG----DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGV 418 (522)
Q Consensus 343 ~GlhfH~GS~~~----~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~ 418 (522)
.||++|++++.. +.....++++++.++.+.+++.|+++.++++|+..+... ++ +.+.
T Consensus 155 ~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~~nSa~~~~------------------~~-~~~~ 215 (374)
T 4ecl_A 155 AGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKSSGLNIPKVHIQSSYGLLN------------------YP-ELEC 215 (374)
T ss_dssp EEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCHHHHHH------------------CT-TCCC
T ss_pred EEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHHcCCCCCeEEecCCchhhc------------------Cc-ccCC
Confidence 999999999865 233456778888888888888899999999987532100 00 0000
Q ss_pred EEEecCcc----------------eeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcc
Q psy9378 419 SIIAEPGR----------------YYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYD 474 (522)
Q Consensus 419 ~li~EPGR----------------~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~ 474 (522)
. ++.||- .-..++++|.++|+.+|+..... .+ ....+...+.-|--+.+.-.+-+
T Consensus 216 d-~vR~Gi~lyG~~p~~~~~~~~~~~l~pa~~l~a~Vi~vk~~~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~R~l~~ 294 (374)
T 4ecl_A 216 D-YIRVGVALYGVLSSTNDKTKLELDLRPVLSLKAKVVLIRKIKQGESVGYSRAFTATRDSLIAILPIGYADGFPRNLSC 294 (374)
T ss_dssp S-EEEESGGGGTCCSSSCCCCSSCCCCCCCEEEEEECCEEEEECTTCBSTTCTTCBCSSCEEEEEESCCGGGTCCGGGTT
T ss_pred C-EEcccceeeCCCCccccccccccCceEEEEEEEEEEEEEEcCCCCcCCCCCeEECCCCcEEEEEecccccccchhccC
Confidence 0 222222 23568899999999999754311 11 12356788888876665433321
Q ss_pred cCccccccCCCCCCCCcceEEeeecCCCCCc--------cccccCcEEEE
Q psy9378 475 HAVCTPIPFNVMDDSQVSLRSPLFLQESFLL--------SCLSLFFCVLW 516 (522)
Q Consensus 475 ~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~--------D~l~~~~~~~~ 516 (522)
. ..++++ ...+..+.|..|+-. +....||.|.+
T Consensus 295 ~--~~~v~i-------~g~~~pivGrv~MD~~~vDvt~~~~~~~Gd~v~l 335 (374)
T 4ecl_A 295 G--NSYVLI-------GGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATL 335 (374)
T ss_dssp T--SCEEEE-------TTEEEEEESCCCSSCEEEECTTCSSCCTTCEEEE
T ss_pred C--ceEEEE-------CCEEEEEEChhhhceEEEEcCCCCCCCCCCEEEE
Confidence 1 012222 134678888888531 23566776543
No 33
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=99.67 E-value=2.3e-17 Score=175.35 Aligned_cols=73 Identities=48% Similarity=1.007 Sum_probs=68.0
Q ss_pred CCcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 5 ~~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
++.++++||||||+++|++.+++.||++++||||+|.+|||||++|+|+|||+++|+++++.++..|+++|+.
T Consensus 348 ~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~fN~~~~p~~v~~~~~~~~~~ir~~ 420 (424)
T 7odc_A 348 EKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLMKQI 420 (424)
T ss_dssp CCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHC--
T ss_pred CCeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhhccCCCCCCCCeEEEEEcchHHHHHHhc
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999886
No 34
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.62 E-value=4.4e-14 Score=147.35 Aligned_cols=272 Identities=13% Similarity=0.110 Sum_probs=180.1
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecC----CCcHHHHHHHHHcCCeEEEEc-------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKC----NDSQMVLEVLAALGTGFDCAS------------------- 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKA----N~~~~Vlk~L~~~G~GfDvaS------------------- 264 (522)
......++|+++|++|++.+++.++ ++++++++|| +....|++.+.+...+|.|++
T Consensus 6 ~r~~~~~Idl~al~~N~~~l~~~~~~~~~l~aVvKanaYGhg~~~va~~l~~~~~~f~va~~~Ea~~lr~~G~~~~ilvl 85 (367)
T 3mub_A 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQDDVDGFCVSNIDEAIELRQAGLSKPILIL 85 (367)
T ss_dssp TSSCEEEECHHHHHHHHHHHHHTSCTTCEEEEECHHHHHTTCHHHHHHHHGGGCSEEEESSHHHHHHHHHTTCCSCEEEE
T ss_pred cCCeEEEEeHHHHHHHHHHHHHhCCCCCEEEEEECcccccCCHHHHHHHHHHhCCeEEEeEHHHHHHHHHcCCCCCEEEE
Confidence 3456789999999999999999987 7999999999 567899999987744999999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC---CCCeEEEEEeeCCCcccCCCCCccccCc-CCCHHHHHHHHhhC
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH---PTAQLVIRIRCDAEVAQCQLGMKFGCDP-ISEAPRLLRLAKSL 338 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~---~~~~V~LRIn~~~~~~~~~~~sKFGi~~-e~e~~~ll~~~k~~ 338 (522)
.++++++.++++++. +++||+++++.|.+.+ +..+|+|+||+++ +|+|+.+ + ++.++++.+++.
T Consensus 86 g~~~~~~~~~~~~~~l~-~~V~s~~~l~~l~~~a~~~~~~~V~lkvdtGm--------~R~G~~~~e-e~~~~~~~i~~~ 155 (367)
T 3mub_A 86 GVSEIEAVALAKEYDFT-LTVAGLEWIQALLDKEVDLTGLTVHLKIDSGM--------GRIGFREAS-EVEQAQDLLQQH 155 (367)
T ss_dssp EECCGGGHHHHHHTTEE-EEECCHHHHHHHHHTTCCCTTCEEEEEECSSC--------CSSSBCSHH-HHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHhcCCeeEEEEECCCC--------CcCCCCcHH-HHHHHHHHHccC
Confidence 556789999999884 8999999999999876 3578999998763 8999998 8 899999887558
Q ss_pred CCeEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEc--CCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q psy9378 339 DLDVVGVSFHVGSGCG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLG--GGYPGYTGYSMNRIAEIINVALDEYFPVE 415 (522)
Q Consensus 339 ~L~l~GlhfH~GS~~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIG--GGf~~~~~~~~~~~a~~I~~~l~~~~~~~ 415 (522)
++++.|+++|+++... +.+...++++++.++.+.+++. +.+++++ +|+.. .+ +.-.+.++..+.-| .
T Consensus 156 ~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~---~~~~h~~NSa~~l~-~~---~~~~d~vR~Gi~lY-G-- 225 (367)
T 3mub_A 156 GVCVEGIFTHFATADEESDDYFNAQLERFKTILASMKEV---PELVHASNSATTLW-HV---ETIFNAVRMGDAMY-G-- 225 (367)
T ss_dssp TCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHHHTCSSC---CSEEEEECHHHHHH-CG---GGCCSEEEECTTTT-T--
T ss_pred CcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHHhhhc---CCeEEEecChHHhc-Cc---ccCCCeEEhhhHhh-C--
Confidence 8999999999998754 3334456777777766544332 3445543 22100 00 00000111111101 0
Q ss_pred CCcEEEecCc----ceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccccccC
Q psy9378 416 EGVSIIAEPG----RYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPF 483 (522)
Q Consensus 416 ~~~~li~EPG----R~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~ 483 (522)
..+ .++ ..-..++++|-++|+.+|+..... .+ ....+...+.-|--+.+.-.+-+ .++++
T Consensus 226 ~~p----~~~~~~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R~ls~----~~v~i 297 (367)
T 3mub_A 226 LNP----SGAVLDLPYDLIPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQN----FSVLV 297 (367)
T ss_dssp CCT----TTTSSCCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECSSCEEEEEESCCGGGTCCGGGTT----CEEEE
T ss_pred CCC----cccccccccCcceEEEEEEEEEEEEEcCCCCeeCCCCeEECCCCeEEEEEeecchhchhhhcCC----CeEEE
Confidence 000 011 123578999999999999875421 00 12356777887776665433321 12222
Q ss_pred CCCCCCCcceEEeeecCCCCCc---cc---cccCcEEE
Q psy9378 484 NVMDDSQVSLRSPLFLQESFLL---SC---LSLFFCVL 515 (522)
Q Consensus 484 ~~~~~~~~~~~~~l~Gp~C~~~---D~---l~~~~~~~ 515 (522)
...+..+.|..|+-. |. ...||-|.
T Consensus 298 -------~G~~~pivGrv~MD~~~vDv~~~~~~Gd~v~ 328 (367)
T 3mub_A 298 -------DGQACPIVGRVSMDQITIRLPKLYPLGTKVT 328 (367)
T ss_dssp -------TTEEEEBCSCCCSSCEEEEESSCCCTTCEEE
T ss_pred -------CCEEeEEeChhcccEEEEECCCCCCCCCEEE
Confidence 124566777766431 22 55677544
No 35
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.60 E-value=3.4e-15 Score=156.01 Aligned_cols=274 Identities=12% Similarity=0.121 Sum_probs=181.6
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecC----CCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKC----NDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKA----N~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
.....++|+++|++|++.+++.++ ++++++++|| +..+.|++.+.+.|+ +|.|++
T Consensus 7 r~~~~~Idl~al~~N~~~l~~~~~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~Ilvl 86 (371)
T 3e5p_A 7 RPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILIL 86 (371)
T ss_dssp SSCEEEECHHHHHHHHHHHHHSSCSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCEEEE
T ss_pred CCeEEEEEHHHHHHHHHHHHHhcCCCCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCCCCCEEEE
Confidence 456789999999999999999987 7999999999 578999999999997 999999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHH-hhhCC----CCeEEEEEeeCCCcccCCCCCccccCc-CCCHHHHHHHHh
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKV-KQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDP-ISEAPRLLRLAK 336 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i-~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~-e~e~~~ll~~~k 336 (522)
+++++++.++++++. +++||+++++.| .+.++ ..+|+|+|++++ +|||+.+ + ++.++++.++
T Consensus 87 g~~~~~~~~~~~~~~i~-~~V~s~~~l~~l~~~~a~~~~~~~~V~lkvdtGm--------~R~G~~~~e-e~~~~~~~i~ 156 (371)
T 3e5p_A 87 SVVDLAYVPLLIQYDLS-VTVATQEWLEAALQQLTPESNTPLRVHLKVDTGM--------GRIGFLTPE-ETKQAVRFVQ 156 (371)
T ss_dssp EECCGGGHHHHHHHTCE-EEECCHHHHHHHHHHHCSCCSCCBCEEEEBCSSS--------CSSSBCSSH-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHHHcCCceEEEEEECCCC--------CcCCCCCHH-HHHHHHHHHH
Confidence 566889999999984 999999999999 88753 468999998763 7999998 7 8999999887
Q ss_pred h-CCCeEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC--CCC-C-CCCCCHHHHHHHHHHHHHh
Q psy9378 337 S-LDLDVVGVSFHVGSGCG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG--GYP-G-YTGYSMNRIAEIINVALDE 410 (522)
Q Consensus 337 ~-~~L~l~GlhfH~GS~~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG--Gf~-~-~~~~~~~~~a~~I~~~l~~ 410 (522)
+ .++++.|+++|+++... +.+...++++++.++.+.+++ .+.+++++- |+. . +... +.++..+.-
T Consensus 157 ~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~---~~~~~h~~NSa~~~~~~~~~~------d~vR~Gi~l 227 (371)
T 3e5p_A 157 SHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEE---LPRYVHVSNSATALWHPDVPG------NMIRYGVAM 227 (371)
T ss_dssp HSTTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSC---CCSEEECBCHHHHHHCTTSSC------SEEEECGGG
T ss_pred hCCCccEEEEEEEcCCCCCCCcHHHHHHHHHHHHHHHHhhh---cCCeEEEecChhHhcCcccCC------CeEeeCcee
Confidence 6 58999999999999754 333445566666554433222 134555532 210 0 0000 111111111
Q ss_pred hCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCcccccc
Q psy9378 411 YFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIP 482 (522)
Q Consensus 411 ~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~ 482 (522)
| ...+.... .+-..-..++++|-++|+.+|+..... .+ ....+...+.-|--+.+.-.+-+ .+++
T Consensus 228 Y-G~~p~~~~--~~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R~ls~----~~v~ 300 (371)
T 3e5p_A 228 Y-GLNPSGNK--LAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQG----FTVL 300 (371)
T ss_dssp G-TCCTTTTS--SCCSSCCCCCEEEEEECCCEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT----CEEE
T ss_pred E-CCCccccc--cccccCcceEEEEEEEEEEEEEcCCCCeECcCCeeECCCCcEEEEEeecchhchhhhcCC----CeEE
Confidence 1 00000000 000123678999999999999875421 00 12356777877766665433321 1222
Q ss_pred CCCCCCCCcceEEeeecCCCCCc---cc---cccCcEEEE
Q psy9378 483 FNVMDDSQVSLRSPLFLQESFLL---SC---LSLFFCVLW 516 (522)
Q Consensus 483 ~~~~~~~~~~~~~~l~Gp~C~~~---D~---l~~~~~~~~ 516 (522)
++ ..+..+.|..|+-. |. ...||-|.+
T Consensus 301 i~-------G~~~pivGrv~MD~~~vDv~~~~~~Gd~v~l 333 (371)
T 3e5p_A 301 VN-------GKRCEIVGRVCMDQCMIRLAEEVPVGPVVTL 333 (371)
T ss_dssp SS-------SCEEEEESCCCSSCEEEEESSCCCSCCEEEE
T ss_pred EC-------CEEeEEeceecccEEEEECCCCCCCCCEEEE
Confidence 21 24567788877532 22 566775543
No 36
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.59 E-value=1.7e-14 Score=151.00 Aligned_cols=235 Identities=13% Similarity=0.139 Sum_probs=158.3
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCC----cHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCND----SQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~----~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
..++..++|+++|++|++.+++.++++++++++|||+ ...|++.+.+.|+ +|.|++
T Consensus 18 ~~~~~~~Idl~al~~N~~~l~~~~~~~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag~~~~~ilv 97 (376)
T 3kw3_A 18 PATAIATIDVRAIVANYRTLAQHVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIAL 97 (376)
T ss_dssp CCSEEEEECHHHHHHHHHHHHHHHTTSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEEEE
T ss_pred CCCeEEEEcHHHHHHHHHHHHHhCCCCEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcCCCCCCEEE
Confidence 4578999999999999999999998899999999975 6899999999997 899999
Q ss_pred ---CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh
Q psy9378 265 ---KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS 337 (522)
Q Consensus 265 ---K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~ 337 (522)
-++++++.+++.++. +++||+++++.|.+.+ +..+|+|+||+++ +|||+.++ ++.++++.+++
T Consensus 98 l~~~~~~~~~~~~~~~i~-~~V~s~~~l~~l~~~a~~~~~~~~V~lkVdtGm--------~R~G~~~~-e~~~l~~~i~~ 167 (376)
T 3kw3_A 98 LNGFPHKAEEFVAQSGII-PLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTNM--------SRLGLDKK-ELQKLIKNPTI 167 (376)
T ss_dssp TTCCCTTCHHHHHHTTCE-EEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSC--------CSSSBCHH-HHHHHHHCCTH
T ss_pred EeCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHHcCCCeEEEEEECCCC--------CcccCCHH-HHHHHHHHHHh
Confidence 234567888888884 8999999999998653 5688999998763 79999998 89998887754
Q ss_pred -CCCeEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEc--CCCCCCCCCCHHHHHHHHHHHHHhhCC
Q psy9378 338 -LDLDVVGVSFHVGSGCG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLG--GGYPGYTGYSMNRIAEIINVALDEYFP 413 (522)
Q Consensus 338 -~~L~l~GlhfH~GS~~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIG--GGf~~~~~~~~~~~a~~I~~~l~~~~~ 413 (522)
.++++.|+++|+++... +.+...++++++.++.+.++ ++. ++++ +|+.. . + +.-.+.++..+.-| .
T Consensus 168 ~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~--~~~---~h~aNSa~~l~-~-~--~~~~d~vR~Gi~lY-G 237 (376)
T 3kw3_A 168 FEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLP--TCK---VSFANSGGIFL-G-S--DFYFDLVRPGIALY-G 237 (376)
T ss_dssp HHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSC--CCC---EECCCHHHHTT-C-G--GGTTTEECCSGGGG-T
T ss_pred CCCCcEEEEEEECCCCCCCCcHHHHHHHHHHHHHHhhcc--CCC---EEEEeChhhhc-C-c--cccCCEEecChhhc-C
Confidence 58999999999998754 33344556776665544322 222 3322 22110 0 0 00011122222111 0
Q ss_pred CCCCcEEEecCcc-eeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcch
Q psy9378 414 VEEGVSIIAEPGR-YYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFN 469 (522)
Q Consensus 414 ~~~~~~li~EPGR-~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~ 469 (522)
..+ .++. .-..++++|-++|+.+|+..... .+ ....+...+.-|--+.+.
T Consensus 238 --~~p----~~~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~ 296 (376)
T 3kw3_A 238 --VDP----HGKHPTPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWP 296 (376)
T ss_dssp --CCT----TCCSSCSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCC
T ss_pred --CCC----CcccccCCcceEEEEEEEEEEEecCCCCeeccCCeEECCCCeEEEEEEecccccch
Confidence 000 0000 13578999999999999865321 00 112456777777665543
No 37
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=99.59 E-value=2.9e-16 Score=163.69 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=66.2
Q ss_pred CCcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHh
Q psy9378 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKD 76 (522)
Q Consensus 5 ~~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~ 76 (522)
++..+++||||||+++|++.++..+|++++||||+|.+|||||++|+|+|||+++|+++++.++..|.++|+
T Consensus 283 ~~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~v~~~~~~~~irr 354 (365)
T 3mt1_A 283 EGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE 354 (365)
T ss_dssp CSSEEEEEECSSCCSSCEEEEEEESSCCCTTCEEEESSCCTTSTTSCCCGGGCCCCEEEEECTTSCEEEEEC
T ss_pred CCceEEEEEeCCCCccCEEcccccCCCCCCCCEEEEecccchhhhhcccccCCCCCcEEEEECCCcEEEeee
Confidence 356789999999999999999999999999999999999999999999999999999998877777888776
No 38
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=99.57 E-value=6.1e-16 Score=164.06 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=66.5
Q ss_pred CCcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 5 ~~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
++..+++||||||+++|++.++..+|++++||||+|.+|||||++|+|+|||+++|+++++.++..|.++|+.
T Consensus 337 ~~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fN~~~~p~~v~v~~~~~~~~iRre 409 (418)
T 3n29_A 337 ENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREF 409 (418)
T ss_dssp TTCEEEEEECSSSCTTCEEEEEEESSCCCTTCEEEESSCSSSSGGGCCCGGGCCCCEEEEECTTSCEEEEECC
T ss_pred CCceEEEEEcCCCCCCCEEeecccCCCCCCCCEEEEeCccchhHHHhccccCCCCCCEEEEEcCCcEEEEecC
Confidence 4567899999999999999988888899999999999999999999999999999999988667778888753
No 39
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=99.56 E-value=4.6e-14 Score=142.02 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=129.1
Q ss_pred EEEeHHHHHHHHHHHHHhCC----CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc------CCH---------------
Q psy9378 214 YVLDVGEIVRKHEDWKLKLP----RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------KPI--------------- 267 (522)
Q Consensus 214 yV~Dl~~I~~ni~~l~~~lp----~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------K~~--------------- 267 (522)
..+|+++|++|++.+++..+ ++++++++|+++...|++. .+.|+ +|.|++ +..
T Consensus 25 l~idl~ai~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~-~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~ 103 (282)
T 3cpg_A 25 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAA-IDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGV 103 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHH-HHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCCHHHHHHH-HHCCCCEEEEEeHHHHHHHHHhhhhhcccccccccc
Confidence 56899999999999998873 6899999999999999998 68897 899999 110
Q ss_pred ----------------------HHHHHHHH-cCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCcc
Q psy9378 268 ----------------------SHIRYAAE-YGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKF 320 (522)
Q Consensus 268 ----------------------~eL~~A~~-~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKF 320 (522)
++++.+++ .++ .++|||+++++.|.+.+ +..+|+||||++.. .+||
T Consensus 104 ~G~~~d~~~~~i~~~~iG~~~~~~~~~~~~~~~l-~~~Vds~~~l~~L~~~a~~~~~~~~V~lkVdtGme------~~R~ 176 (282)
T 3cpg_A 104 AGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDT-IESVDSIDLAEKISRRAVARGITVGVLLEVNESGE------ESKS 176 (282)
T ss_dssp C------CCEEECEEECSCCCGGGHHHHTTTCSE-EEEECCHHHHHHHHHHHHHHTCCEEEEEEBCCSSC------TTSS
T ss_pred ccccccccccceeeeecChhHHHHHHHHHHhCCE-EEEeCCHHHHHHHHHHHHhcCCCceEEEEEECCCC------CCCC
Confidence 12334444 455 47899999999998753 45789999998732 3999
Q ss_pred ccCcCCCHHHHHHHHhh-CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhc-CC---CccEEEEcC
Q psy9378 321 GCDPISEAPRLLRLAKS-LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSL-GF---SMRVLDLGG 387 (522)
Q Consensus 321 Gi~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~-G~---~l~~LdIGG 387 (522)
|++++ ++.++++.+++ .+|++.||++|.|++. +++...+..+++.++.+.+++. |+ .+..+++|+
T Consensus 177 G~~~e-e~~~l~~~i~~~~~l~l~Gl~th~~~~~-~~~~~~~~~~~l~~~~~~l~~~~g~~~~~~~~lS~g~ 246 (282)
T 3cpg_A 177 GCDPA-HAIRIAQKIGTLDGIELQGLMTIGAHVH-DETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGM 246 (282)
T ss_dssp SBCGG-GHHHHHHHHHTCTTEEEEEEECCCCCSS-CHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCC
T ss_pred CcCHH-HHHHHHHHHHhCCCceEEeEEEECCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCEEEecC
Confidence 99998 99999999876 5999999999999976 5665666777777777766654 63 467788654
No 40
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.54 E-value=6e-14 Score=147.06 Aligned_cols=273 Identities=12% Similarity=0.069 Sum_probs=169.3
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCC----CcHHHHHHHHHcCC-eEEEEc------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCN----DSQMVLEVLAALGT-GFDCAS------------------ 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN----~~~~Vlk~L~~~G~-GfDvaS------------------ 264 (522)
......++|+++|++|++ +++.++ ++++++++||| ....|++.+.+.|+ +|.|++
T Consensus 6 ~r~~~~~Idl~al~~N~~-l~~~~~~~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi~~~ilv 84 (382)
T 4a3q_A 6 YRSAYMNVDLNAVASNFK-VFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKILV 84 (382)
T ss_dssp CSSEEEEEEHHHHHHHHH-HHHHHCTTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSEEEE
T ss_pred cCCEEEEEEHHHHHHHHH-HHhhcCCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCCCCCEEE
Confidence 345678999999999999 998875 79999999995 57999999999997 899999
Q ss_pred ---CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC-----CCeEEEEEeeCCCcccCCCCCccccCcCCC-HHHHHHHH
Q psy9378 265 ---KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP-----TAQLVIRIRCDAEVAQCQLGMKFGCDPISE-APRLLRLA 335 (522)
Q Consensus 265 ---K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~-----~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e-~~~ll~~~ 335 (522)
.++++++.+++.++. +++||+++++.|.+.+. ..+|+|+|+++ .+|+|+.++ + +.++++.+
T Consensus 85 lg~~~~~~~~~~~~~~i~-~~V~s~~~l~~l~~~a~~~~~~~~~V~lkvDtG--------m~R~G~~~~-e~~~~~~~~i 154 (382)
T 4a3q_A 85 LGVLPAKDIDKAIQHRVA-LTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTG--------MGRLGIKDT-NTYQEVIEII 154 (382)
T ss_dssp CSCCCGGGHHHHHHTTCB-EEECCHHHHHHHHHTCCTTCCSCEEEEEEBCSS--------SSSSSBCCH-HHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCCceeEEEEECCC--------CCcCCCChH-HHHHHHHHHH
Confidence 556789999999995 89999999999998753 45788888775 389999987 6 88999888
Q ss_pred hh-CCCeEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCC
Q psy9378 336 KS-LDLDVVGVSFHVGSGCG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFP 413 (522)
Q Consensus 336 k~-~~L~l~GlhfH~GS~~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~ 413 (522)
++ .++++.|+++|+++... +.+ ..++++++.++.+. . ..+.+++++---+....++ .-.+.++..+.-| .
T Consensus 155 ~~~~~l~l~Gl~tH~a~ad~~~~~-~~~Q~~~F~~~~~~---l-~~~~~~h~aNSa~~l~~~~--~~~d~vR~Gi~lY-G 226 (382)
T 4a3q_A 155 QQYEQLVFEGVFTHFACADEPGDM-TTEQYQRFKDMVNE---A-IKPEYIHCQNSAGSLLMDC--QFCNAIRPGISLY-G 226 (382)
T ss_dssp HHCTTEEEEEEECCC-------CH-HHHHHHHHHHHHTT---S-CCCSEEECCCHHHHHHCCC--TTCSEECCCGGGG-T
T ss_pred HhCCCceEEEEEEECcCCCCCCch-HHHHHHHHHHHHHh---h-CCCCcEEEEcChhhhcCcc--cCCCeEeecceeE-C
Confidence 65 68999999999998653 223 55566666555432 2 3455555543110000000 0000111111111 0
Q ss_pred CCCCcEEEec-C--cceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCcccccc
Q psy9378 414 VEEGVSIIAE-P--GRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIP 482 (522)
Q Consensus 414 ~~~~~~li~E-P--GR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~ 482 (522)
..+. -+ + -..-..++++|-++|+.+|+..... .+ ....+...+.-|--+.+.-.+-+ .+++
T Consensus 227 --~~p~--~~~~~~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R~~s~----~~v~ 298 (382)
T 4a3q_A 227 --YYPS--EYVQQKVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQG----SFVN 298 (382)
T ss_dssp --CCSS--HHHHHHCSSCCCCCEEEEEECCEEEC------------------CEEEEESCCGGGTCCGGGTT----CEEE
T ss_pred --CCcc--cccccccccCCceeEEEEEEEEEEEEcCCCCEEcCCCeEECCCCeEEEEEeeccccccchhcCC----CEEE
Confidence 0000 00 0 0123578999999999999865321 00 11245677777766655333321 1222
Q ss_pred CCCCCCCCcceEEeeecCCCCCc------cccccCcEEE
Q psy9378 483 FNVMDDSQVSLRSPLFLQESFLL------SCLSLFFCVL 515 (522)
Q Consensus 483 ~~~~~~~~~~~~~~l~Gp~C~~~------D~l~~~~~~~ 515 (522)
+ ...+..+.|..|+-. |....||-|.
T Consensus 299 i-------~G~~~pivGrv~MD~~~vDvt~~~~~Gd~V~ 330 (382)
T 4a3q_A 299 V-------NGHQCEVIGRVCMDQTIVKVPDQVKAGDSVI 330 (382)
T ss_dssp E-------TTEEEEBCSCCCSSCEEEEECTTCCTTCEEE
T ss_pred E-------CCEEEEEeeeeeccEEEEECCCCCCCCCEEE
Confidence 2 134567777777432 1345566543
No 41
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.54 E-value=1.3e-15 Score=162.77 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=65.0
Q ss_pred CCcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 5 ~~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
++..+++||||||+++|++.+++.||++++||||+|.+|||||++|+|+|||+++|+++++. +..|+++|++
T Consensus 356 ~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v~-~~~~~~ir~r 427 (443)
T 3vab_A 356 APRIRADFVGPVCETGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPEVLGD-GERYHVVRPR 427 (443)
T ss_dssp SCEEEEEEECSSSSTTCEEEEEEEEECCCTTCEEEEESCTTTTGGGCCCGGGCCCCCEEEEE-TTEEEEEECC
T ss_pred CCceEEEEEccCCCCCCEEeeccCcCCCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEEE-CCeEEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999764 5567776665
No 42
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=99.50 E-value=8.5e-15 Score=156.58 Aligned_cols=75 Identities=39% Similarity=0.772 Sum_probs=69.4
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhhcCC
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLPL 80 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~~~~ 80 (522)
+..+++|+||+|+++|++..++.||++++||||+|.+|||||++|+|+|||+++|+++++.++..|+++|+....
T Consensus 347 ~~~~~~v~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~~~~s~fN~~~~p~~v~~~~~~~~~~ir~~~~~ 421 (448)
T 3btn_A 347 PLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSFSDWYEMQDAGIT 421 (448)
T ss_dssp CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCCGGGTTCCCEEEEEEEHHHHHHHHHTTGG
T ss_pred CceEEEEECCCCCCCCEEeeccccCCCCCCCEEEEcCCCCCchhhcccccCCCCCeEEEEEcCCceeEEEecccc
Confidence 346799999999999999999999999999999999999999999999999999999998899999999987433
No 43
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=156.75 Aligned_cols=72 Identities=46% Similarity=0.965 Sum_probs=68.4
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
+..+++|+||+|+++|++..++.||++++||||+|.++||||++|+|+|||+++|+++++.++..|+++|+.
T Consensus 359 ~~~~~~I~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~s~~s~fN~~~~p~~v~~~~~~~~~~ir~~ 430 (471)
T 2oo0_A 359 KYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQF 430 (471)
T ss_dssp CEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchhhhhccccCCCCCeEEEEecCCceeEEEec
Confidence 346799999999999999999999999999999999999999999999999999999998899999999987
No 44
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.50 E-value=7.2e-15 Score=156.90 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=64.1
Q ss_pred CCcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 5 ~~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
++..+++||||||+++|++.+++.| ++++||||+|++|||||++|+|+|||+|+|+++++ ++..|+++|++
T Consensus 356 ~~~~~~~v~Gp~C~s~D~l~~~~~l-~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v-~~~~~~~ir~r 426 (441)
T 3n2b_A 356 GEAQTYDLVGPVCETSDFLGKDRDL-VLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV-DGNKTYLVRQR 426 (441)
T ss_dssp SCCEEEEEECSSSSTTCEEEEEEEE-CCCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEE-ETTEEEEEECC
T ss_pred CCceeEEEECCcCCCCCEEeecccc-CCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEE-ECCcEEEEEec
Confidence 3567899999999999999999999 89999999999999999999999999999999866 45667777765
No 45
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.50 E-value=9.6e-13 Score=138.39 Aligned_cols=263 Identities=11% Similarity=0.107 Sum_probs=171.0
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCC----CcHHHHHHHHHc-CC-eEEEEc------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCN----DSQMVLEVLAAL-GT-GFDCAS------------------ 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN----~~~~Vlk~L~~~-G~-GfDvaS------------------ 264 (522)
+.....++|+++|++|++.+++.-+++++++++||| ....|++.+.+. |+ +|.|++
T Consensus 7 ~r~~~l~Idl~al~~N~~~l~~~~~~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aGi~~~Ilv 86 (395)
T 3hur_A 7 HRPTWVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLPIWV 86 (395)
T ss_dssp SCCEEEEEEHHHHHHHHHHHHHHHTCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSCEEE
T ss_pred cCCeEEEEeHHHHHHHHHHHHhcCCCCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcCCCCCEEE
Confidence 345678999999999999999885589999999997 578999999999 97 899998
Q ss_pred ---CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhh-CCCCeEEEEEeeCCCcccCCCCCccccCcCCC-HHHHHHHHhh-C
Q psy9378 265 ---KPISHIRYAAEYGIDTMTFDNEIELQKVKQF-HPTAQLVIRIRCDAEVAQCQLGMKFGCDPISE-APRLLRLAKS-L 338 (522)
Q Consensus 265 ---K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~-~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e-~~~ll~~~k~-~ 338 (522)
.++++++.+++.++. .+++|+++++.|.+. . ..+|+|.||++ .+|+|+.++ + +.++++.+++ .
T Consensus 87 lg~~~~~~~~~~~~~~l~-~~V~s~~~l~~l~~~~~-~~~V~lkvDtG--------m~R~G~~~~-e~~~~~~~~i~~~~ 155 (395)
T 3hur_A 87 LGAWDYSDLKLFIDHDIV-ITIPSLAWLQNLPDFEG-TLKVSLAIDTG--------MTRIGFDKA-DEISAAKKIIDKNP 155 (395)
T ss_dssp SSCCCGGGHHHHHHTTEE-EEECCHHHHHTCCCCSS-CEEEEEEBCCS--------SCSSSBCCH-HHHHHHHHHHHHCT
T ss_pred EcCCCHHHHHHHHHcCCE-EEECCHHHHHHHHHhcC-CCcEEEEEcCC--------CCCcCCChH-HHHHHHHHHHHhCC
Confidence 446788888898884 899999999998876 2 46777887765 389999987 6 8889888866 6
Q ss_pred CCeEEEEEEecCCCCC-ChH---HHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCC-HHHHHHHHHHHHHhhCC
Q psy9378 339 DLDVVGVSFHVGSGCG-DPP---VFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYS-MNRIAEIINVALDEYFP 413 (522)
Q Consensus 339 ~L~l~GlhfH~GS~~~-~~~---~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~-~~~~a~~I~~~l~~~~~ 413 (522)
++++.|+++|+++... +.+ ...++++++.++.+.+ ..++.+++++.--+.-..++ .....+.++..+.-| .
T Consensus 156 ~l~l~Gl~TH~a~ad~~~~~~~~~~~~Q~~~F~~~~~~l---~~~~~~~h~aNSa~~l~~~~~~~~~~d~vR~Gi~LY-G 231 (395)
T 3hur_A 156 QLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQ---GFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLIS-G 231 (395)
T ss_dssp TEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTS---CCCGGGEECCCHHHHHHTTTCTTSCCSEECCCGGGG-T
T ss_pred CceEEEEEEeCcCCCCCCCcchHHHHHHHHHHHHHHHhc---cCCCCeEEEcCCHHHhcCcccccccCceEecChhhc-C
Confidence 8999999999998754 333 3455677666554432 23444455432100000000 000001111111111 0
Q ss_pred CCCCcEEEecCcc----ee--eccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcchhhhcccCccc
Q psy9378 414 VEEGVSIIAEPGR----YY--VASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFNCIIYDHAVCT 479 (522)
Q Consensus 414 ~~~~~~li~EPGR----~l--va~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~~~l~~~~~~~ 479 (522)
..+ .++. .- ..++++|-++|+.+|+..... .+ ....+...+.-|--+.+.-.+-+ .
T Consensus 232 --~~p----~~~~~~~~~~~~l~pv~~l~a~Ii~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R~ls~----~ 301 (395)
T 3hur_A 232 --VNV----SNGELKMPPNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQK----S 301 (395)
T ss_dssp --CCT----TTTSSCCCTTCCCCCCEEEEEECCEEEEECTTCBSSTTCSCBCSSSEEEEEESCCTTCGGGGGEEE----E
T ss_pred --CCC----CccccccccccccceeEEEEEEEEEEEEeCCCCeEcCCCeEECCCCcEEEEEEeccccccchhcCC----C
Confidence 000 0111 12 578999999999999875321 11 12356788888877766443322 2
Q ss_pred cccCCCCCCCCcceEEeeecCCCC
Q psy9378 480 PIPFNVMDDSQVSLRSPLFLQESF 503 (522)
Q Consensus 480 p~~~~~~~~~~~~~~~~l~Gp~C~ 503 (522)
+++++ ..+..+.|..|+
T Consensus 302 ~v~i~-------G~~~pivGrv~M 318 (395)
T 3hur_A 302 SVIIN-------GKRMPIIGRITM 318 (395)
T ss_dssp EEEET-------TEEEEBCSCCCS
T ss_pred eEEEC-------CEEEEEECceec
Confidence 33221 245667777664
No 46
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=99.49 E-value=1.2e-14 Score=154.22 Aligned_cols=73 Identities=48% Similarity=0.904 Sum_probs=68.8
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhhcC
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLP 79 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~~~ 79 (522)
..+++|+||+|+++|++..++.||++++||||+|.++||||++|+|+||||++|.++++.++..|+++|+.++
T Consensus 350 ~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~s~~s~fn~~~~p~v~~~~~~~~~~~ir~~~~ 422 (425)
T 1f3t_A 350 LYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 422 (425)
T ss_dssp EEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEECCSCSTTHHHHHCC
T ss_pred eeEEEEEcCCcCCCCEecccccCCCCCCCCEEEEcCCCCCchhhcccccCCCCCEEEEEeCchHHHHHHhhhc
Confidence 4679999999999999999999999999999999999999999999999999999998888999999998754
No 47
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.38 E-value=1.1e-13 Score=146.80 Aligned_cols=69 Identities=28% Similarity=0.470 Sum_probs=63.1
Q ss_pred ceEEEeccCCCcccccccc-------cCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 8 VPSSVWGPTCDGLDKVNDD-------ILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~-------~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
.+++|+||+|+++|++..+ +.||++++||||+|.++||||++|+|+|||+++|+++++. +..|+++|++
T Consensus 333 ~~~~v~G~~C~s~D~~~~d~~~~~~~~~lp~~~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~~~-~~~~~~ir~r 408 (425)
T 1knw_A 333 VETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRR 408 (425)
T ss_dssp EEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEEEEE-TTEEEEEECC
T ss_pred eeEEEECCCCCCCCEEeecCCCCccceeCCCCCCCCEEEEeCCCcchHHHHhHhhCCCCCeEEEEe-CCcEEEEEeC
Confidence 6799999999999999999 8999999999999999999999999999999999999775 5557777764
No 48
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.37 E-value=1.2e-13 Score=148.27 Aligned_cols=70 Identities=27% Similarity=0.447 Sum_probs=62.2
Q ss_pred CcceEEEeccCCCcccccccccCCC-CCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHH
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLP-EMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLK 75 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP-~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r 75 (522)
+..+++|+||+|+++|++..++.|| ++++||||+|.++||||++|+|+||||++|+++++.++..+.+.|
T Consensus 366 ~~~~~~v~G~~C~s~D~~~~d~~lp~~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~v~~~~~~~i~r 436 (467)
T 2o0t_A 366 PPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVHAGNARLVLR 436 (467)
T ss_dssp CEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCCCCEEEEEETTEEEEEEC
T ss_pred CceeEEEECCCcCCCCEEEeccccCCCCCCCCEEEEcCCCcchHHHhhHhhCCCCCcEEEEeCCeEEEEEc
Confidence 3467999999999999999999999 899999999999999999999999999999999887665544333
No 49
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=99.36 E-value=1.4e-13 Score=144.10 Aligned_cols=71 Identities=25% Similarity=0.404 Sum_probs=65.8
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
..+++|+||+|+++|++..++.||++++||||+|.++||||++|+|+|||+++|+++++.++..|+++|++
T Consensus 304 ~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~~~~~~~~~~~~ir~~ 374 (386)
T 2yxx_A 304 EMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRR 374 (386)
T ss_dssp SEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEECTTSCEEEEECC
T ss_pred ceEEEEEcCCCCCCCEEeeccccCCCCCCCEEEEeCCCCchHHHhhhhhCCCCCcEEEEECCCeEEEEEec
Confidence 46799999999999999999999999999999999999999999999999999999987677788887775
No 50
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.34 E-value=3.5e-13 Score=142.95 Aligned_cols=70 Identities=31% Similarity=0.531 Sum_probs=63.1
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
..+++|+||+|+++|++..++.||++++||||+|.++|||+++|+|+|||+++|+++++ ++..|.++|++
T Consensus 339 ~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~-~~~~~~~ir~r 408 (425)
T 2qgh_A 339 ISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELAL-EDHKIRVIRKR 408 (425)
T ss_dssp CEEEEEECSSSSTTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEE-CC-CEEEEECC
T ss_pred ceEEEEECCCcCCCcEecccccCCCCCCCCEEEEeCCCCchhhhhccccCCCCCeEEEE-ECCcEEEEEec
Confidence 46799999999999999999999999999999999999999999999999999999976 45567777765
No 51
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.33 E-value=3.2e-13 Score=143.19 Aligned_cols=70 Identities=23% Similarity=0.426 Sum_probs=62.5
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCC-CCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVAS-TFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s-~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
..+++|+||+|+|+|++..++.||++++||||+|.++|||+++|+| +|||+++|+++++.++ .+.++|++
T Consensus 336 ~~~~~i~G~~C~s~D~l~~d~~lp~~~~GD~l~~~~~GAY~~~~~s~~fn~~~~p~~v~~~~~-~~~~ir~~ 406 (428)
T 2j66_A 336 LEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNG-SYELIRRK 406 (428)
T ss_dssp CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEETT-EEEEEECC
T ss_pred CceEEEEcCCCCCCcEEEecccCCCCCCCCEEEEeCCCcchHHhhhhhhhCCCCCeEEEEECC-eEEEEEcC
Confidence 4678999999999999999999999999999999999999999986 9999999999987644 46666665
No 52
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.30 E-value=5.8e-13 Score=141.44 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=63.4
Q ss_pred ceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 8 VPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
.+++|+||+|+++|++..++.||++++||||+|.++|||+++|+|+|||+++|+++++. +..|.++|++
T Consensus 349 ~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~~-~~~~~~ir~~ 417 (434)
T 1twi_A 349 EVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS-KKGVFLIRER 417 (434)
T ss_dssp EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECC
T ss_pred ceEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchHhhhhhhhCCCCCeEEEEE-CCcEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999875 5567777755
No 53
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.24 E-value=3e-12 Score=133.25 Aligned_cols=59 Identities=41% Similarity=0.840 Sum_probs=55.7
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEE
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAV 65 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~ 65 (522)
..+++|+||+|+++|++..++.||++++||||+|.++|||+.+|+|+||||++|+++++
T Consensus 314 ~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~~~fn~~~~p~~~~~ 372 (372)
T 2nva_A 314 YVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYYI 372 (372)
T ss_dssp EEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred cceEEEEeCCcCCCCEEcccccCCCCCCCCEEEEcCCCCCchhhhccccCCCCCcEEeC
Confidence 36799999999999999999999999999999999999999999999999999998763
No 54
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=99.22 E-value=4.9e-12 Score=134.03 Aligned_cols=62 Identities=44% Similarity=0.697 Sum_probs=58.3
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcc
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEE 68 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~ 68 (522)
..+++|+||+|+++|++..++.||++++||||+|.++|||+++|+|+||||++|+++++.++
T Consensus 349 ~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~~~~ 410 (419)
T 2plj_A 349 LIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNEF 410 (419)
T ss_dssp EEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEECCC
T ss_pred ceeEEEEcCCcCCCCeeeecccCCCCCCCCEEEEeCCCCchhhhhhhhcCCCCCeEEEEecc
Confidence 46789999999999999999999999999999999999999999999999999999987554
No 55
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=99.20 E-value=4.4e-10 Score=110.82 Aligned_cols=144 Identities=15% Similarity=0.079 Sum_probs=112.4
Q ss_pred CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc------CCH--------------------HHHHHHH-HcCCCEEEEcC
Q psy9378 234 RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------KPI--------------------SHIRYAA-EYGIDTMTFDN 285 (522)
Q Consensus 234 ~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------K~~--------------------~eL~~A~-~~Gv~~i~vDS 285 (522)
++++.-.+|+.+.. .++.+.+.|+ .|.++. |.. +.++.++ ..++ ..+|||
T Consensus 29 ~v~l~AV~Kahg~~-~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~iG~lq~nk~~~~~~~~~~-i~sVds 106 (245)
T 3sy1_A 29 EITLVAVSKTKPAS-AIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVAEHFDW-CITIDR 106 (245)
T ss_dssp GCEEEEECTTCCHH-HHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEECSCCCGGGHHHHHHHCSE-EEEECC
T ss_pred CcEEEEEECCCCHH-HHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeecCCCChHHHHHHHHHCCE-EEecCC
Confidence 68999999998854 4678888996 777777 111 1234444 3455 378999
Q ss_pred HHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEEEEEEecCCCCCChHHHH
Q psy9378 286 EIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVVGVSFHVGSGCGDPPVFG 360 (522)
Q Consensus 286 ~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~~~~~~~~~ 360 (522)
+++++.|.+.++ ..+|+|+||++. ..+|||+.++ ++.++++.+++ .+|++.||++|. +...+++.+.
T Consensus 107 ~~~a~~l~~~a~~~~~~~~V~lqVntG~------e~~R~G~~~e-e~~~l~~~i~~~~~l~l~Glmt~~-~~~~d~~~~~ 178 (245)
T 3sy1_A 107 LRIATRLNDQRPAELPPLNVLIQINISD------ENSKSGIQLA-ELDELAAAVAELPRLRLRGLSAIP-APESEYVRQF 178 (245)
T ss_dssp HHHHHHHHHHSCTTSCCEEEEEEBCCSC------TTCCSSBCGG-GHHHHHHHHTTCTTEEEEEEECCC-CCCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEECCC------CcCCcCCCHH-HHHHHHHHHHcCCCCeEEEEEEeC-CCCCCHHHHH
Confidence 999999998864 368999999863 2489999998 99999998876 599999998775 5556788888
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 361 RAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 361 ~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
+..++++++++.+++.+..++.|+.|+
T Consensus 179 ~~f~~l~~l~~~l~~~~~~~~~LSmGm 205 (245)
T 3sy1_A 179 EVARQMAVAFAGLKTRYPHIDTLALGQ 205 (245)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCEEECCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEeccC
Confidence 889999999988887777889998776
No 56
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.20 E-value=3.6e-12 Score=134.70 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=63.1
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
..++.|+||+|++.|++..++.+|++++||||+|.++|||+++|+|+|||+++|+++++. +..|.++|++
T Consensus 338 ~~~~~i~G~~Cms~D~~~~d~~lp~~~~GD~v~~~~~gAY~~~~~s~fn~~~~p~~~~~~-~~~~~~ir~~ 407 (420)
T 2p3e_A 338 KVVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVE-NGSVKLIRKR 407 (420)
T ss_dssp -CEEEEECSSSSTTCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEEE-TTEEEEEECC
T ss_pred ceeEEEEccCCCCccEEeecccCCCCCCCCEEEEeCCCcchhhhhhhhhcCCCCeEEEEe-CCcEEEEEec
Confidence 367899999999999999999999999999999999999999999999999999999865 5567777765
No 57
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=98.91 E-value=6e-09 Score=103.33 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=109.4
Q ss_pred eHHHHHHHHHHHHHhC-----C-CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc----------------------CCH
Q psy9378 217 DVGEIVRKHEDWKLKL-----P-RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS----------------------KPI 267 (522)
Q Consensus 217 Dl~~I~~ni~~l~~~l-----p-~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS----------------------K~~ 267 (522)
+++.|++|+++..+.. | ++++...+|+++...|. .+.+.|+ +|.|++ -..
T Consensus 17 nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~-~~~~aG~~~fgva~vqEa~~~r~~~~~~l~~h~iG~lq~ 95 (256)
T 1ct5_A 17 QYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQ-ILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQT 95 (256)
T ss_dssp HHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHH-HHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEECSCCCG
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHH-HHHHcCCCEEEEEcHHHHHHHHHhcccCeeEeecCCCCH
Confidence 5778888888887766 4 68999999999987776 5888896 888888 112
Q ss_pred HHHHHH--H-HcCCCEEEEcCHHHHHHHhhhC----C---CCeEEEEEeeCCCcccCCCCCccccCc-CCCHHHHHHHHh
Q psy9378 268 SHIRYA--A-EYGIDTMTFDNEIELQKVKQFH----P---TAQLVIRIRCDAEVAQCQLGMKFGCDP-ISEAPRLLRLAK 336 (522)
Q Consensus 268 ~eL~~A--~-~~Gv~~i~vDS~~EL~~i~~~~----~---~~~V~LRIn~~~~~~~~~~~sKFGi~~-e~e~~~ll~~~k 336 (522)
..++.+ + +.++ ..+|||++.++.|.+.+ + ..+|+|.||++.. .+|+|+.+ + ++.++++.+.
T Consensus 96 nk~~~~~~~~~~~l-~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e------~~R~G~~~~~-e~~~l~~~i~ 167 (256)
T 1ct5_A 96 NKCKDLAKVPNLYS-VETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHE------DQKSGLNNEA-EIFEVIDFFL 167 (256)
T ss_dssp GGHHHHHHCTTEEE-EEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSS------CCSSSBCCHH-HHHHHHHHHH
T ss_pred HHHHHHhcccccCE-EEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEECCCC------CCCcCcCchH-HHHHHHHHHH
Confidence 234444 2 3444 47899999999998753 3 4678888887632 39999998 7 8999999887
Q ss_pred --h-CCCeEEEEEEec--CCCCCChHHHHHHHHHHHHHHHHHhhcCC-CccEEE
Q psy9378 337 --S-LDLDVVGVSFHV--GSGCGDPPVFGRAIYSARQIFDLGNSLGF-SMRVLD 384 (522)
Q Consensus 337 --~-~~L~l~GlhfH~--GS~~~~~~~~~~ai~~~~~l~~~~~~~G~-~l~~Ld 384 (522)
+ .+|++.||++|. +... +++......+.+.++.+.+++ ++ .+.+|.
T Consensus 168 ~~~~~~L~l~Glmth~~~~~ad-~~~~~~~~f~~~~~~~~~l~~-~~~~~~~lS 219 (256)
T 1ct5_A 168 SEECKYIKLNGLMTIGSWNVSH-EDSKENRDFATLVEWKKKIDA-KFGTSLKLS 219 (256)
T ss_dssp STTCCSEEEEEEECCCCCC----------HHHHHHHHHHHHHHH-HHCCCCEEE
T ss_pred HccCCCeeEEEEEEECCcCCCC-CHHHHHHHHHHHHHHHHHHHh-cCCCCCEEE
Confidence 6 599999999999 5542 333334556666666666655 33 456664
No 58
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=98.68 E-value=2.4e-07 Score=91.14 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhC----CCCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc------CC-------------------H
Q psy9378 218 VGEIVRKHEDWKLKL----PRVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------KP-------------------I 267 (522)
Q Consensus 218 l~~I~~ni~~l~~~l----p~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------K~-------------------~ 267 (522)
+..|++++++..+.. +++++.-.+|+.+... ++.+.+.|+ .|.++. |. .
T Consensus 10 l~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~~-i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG~lq~ 88 (244)
T 3r79_A 10 LEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEA-IQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIGPLQS 88 (244)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHHH-HHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECSCCCG
T ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHHH-HHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecCCCCH
Confidence 445555555544443 2589999999988755 477888996 777777 11 1
Q ss_pred HHHHHHHH-cCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCe
Q psy9378 268 SHIRYAAE-YGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLD 341 (522)
Q Consensus 268 ~eL~~A~~-~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~ 341 (522)
+.++.+++ .++ ..++||++.++.|.+.+ +..+|+|.||++.. .+|+|+.++ ++.++++.+++ .+|+
T Consensus 89 nk~~~~v~~~~~-i~sVds~~~a~~L~~~a~~~g~~~~V~LqVdtG~e------~~R~Gv~~e-e~~~l~~~i~~l~~L~ 160 (244)
T 3r79_A 89 NKAADAVALFDV-VESIDREKIARALSEECARQGRSLRFYVQVNTGLE------PQKAGIDPR-ETVAFVAFCRDELKLP 160 (244)
T ss_dssp GGHHHHHHHCSE-EEEECSHHHHHHHHHHHHHHTCCCEEEEEBCTTCC------TTSCSBCHH-HHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHCCE-EEeeCCHHHHHHHHHHHHHcCCCceEEEEEECCCC------cCCCCCCHH-HHHHHHHHHHcCCCCE
Confidence 23344553 455 37899999999988764 46799999998632 489999998 99999998876 5999
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 342 VVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 342 l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
+.||.+|.+... +++ ...+.++++.+. . ++..|..|.
T Consensus 161 l~GlmTh~a~~d-d~~---~~f~~l~~l~~~---l--~~~~lSmGm 197 (244)
T 3r79_A 161 VEGLMCIPPAEE-NPG---PHFALLAKLAGQ---C--GLEKLSMGM 197 (244)
T ss_dssp CCEEECCCCTTS-CSH---HHHHHHHHHHHH---H--TCCEEECCC
T ss_pred EEEEEecCCCCC-CHH---HHHHHHHHHHHh---C--CCCEEEeec
Confidence 999999987653 443 233333333332 2 356666543
No 59
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=92.79 E-value=0.063 Score=55.40 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.2
Q ss_pred ceEEEeccCCCcccccccccC-CC-CCCCCcEEEEcCCCcc
Q psy9378 8 VPSSVWGPTCDGLDKVNDDIL-LP-EMPVGSWLIYRDMGAY 46 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~-LP-~l~~GD~l~~~~~GAY 46 (522)
..+.|+||+|. |++..++. +| ++++||+|+|.++|+|
T Consensus 309 ~~~~ivG~vcm--D~~~~d~~~~p~~~~~GD~v~l~g~~~~ 347 (384)
T 1xfc_A 309 RRCPGVGRICM--DQFMVDLGPGPLDVAEGDEAILFGPGIR 347 (384)
T ss_dssp EEEEEESCCCS--SCEEEEEESSSCCCCTTCEEEEECSSTT
T ss_pred EEeeEeeEecc--ceEEEEccCCCCCCCCCCEEEEEeCCCC
Confidence 46899999995 99999985 99 8999999999999976
No 60
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=91.80 E-value=0.76 Score=45.49 Aligned_cols=95 Identities=9% Similarity=-0.055 Sum_probs=58.1
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
++.++.+.+++.||.+.++|+-..-...+++...+.++.+.+.++.++++|. +.|.++|+-+......++.+++.+++
T Consensus 77 ~~~~l~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~--~~v~~~~~~~~~~~~~~~~~~~~l~~ 154 (305)
T 3obe_A 77 ASKDYKKMVDDAGLRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGV--SCMVQPSLPRIENEDDAKVVSEIFNR 154 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTC--SEEEECCCCCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 6677777788899999988654322223344445556667777788888884 45556543221112235566666665
Q ss_pred HHHhhCCCCCCcEEEecCc
Q psy9378 407 ALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 407 ~l~~~~~~~~~~~li~EPG 425 (522)
..+..- ..+++|.+||=
T Consensus 155 l~~~a~--~~Gv~l~lEn~ 171 (305)
T 3obe_A 155 AGEITK--KAGILWGYHNH 171 (305)
T ss_dssp HHHHHH--TTTCEEEEECC
T ss_pred HHHHHH--HcCCEEEEecC
Confidence 544321 36899999975
No 61
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=90.33 E-value=0.16 Score=51.79 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=30.9
Q ss_pred ceEEEeccCCCcccccccccC-CC-CCCCCcEEEEcCCC
Q psy9378 8 VPSSVWGPTCDGLDKVNDDIL-LP-EMPVGSWLIYRDMG 44 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~-LP-~l~~GD~l~~~~~G 44 (522)
..+.|+||+| +|++..++. +| ++++||||+|.+.+
T Consensus 294 ~~~~ivG~vc--mD~~~~d~~~~~~~~~~GD~v~~~g~~ 330 (361)
T 2dy3_A 294 LDYPQVGRVC--MDQFVISLGDNPHGVEAGAKAVIFGEN 330 (361)
T ss_dssp EEEEEESCCC--SSCEEEEEETCTTCCCTTCEEEEESTT
T ss_pred EEeeEeeEEe--cccEEEEccCCCCCCCCCCEEEEEcCC
Confidence 3689999999 899999986 99 89999999998755
No 62
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=89.45 E-value=1.9 Score=40.95 Aligned_cols=96 Identities=11% Similarity=-0.004 Sum_probs=60.1
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCC----HHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYS----MNRIAE 402 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~----~~~~a~ 402 (522)
++.++.+.+++.||.+.++|....-...+++...+.++.+.+.++.++++|.+ .|.+-+|.... ..+ ++.+++
T Consensus 47 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~--~v~~~~g~~~~-~~~~~~~~~~~~~ 123 (278)
T 1i60_A 47 SLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVK--YVVAVPLVTEQ-KIVKEEIKKSSVD 123 (278)
T ss_dssp CHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCC--EEEEECCBCSS-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEEecCCCCC-CCCHHHHHHHHHH
Confidence 56777777788999999888765222136666677788888888888888854 44443443211 122 455555
Q ss_pred HHHHHHHhhCCCCCCcEEEecCcce
Q psy9378 403 IINVALDEYFPVEEGVSIIAEPGRY 427 (522)
Q Consensus 403 ~I~~~l~~~~~~~~~~~li~EPGR~ 427 (522)
.+++..+.. . ..+++|.+|+-..
T Consensus 124 ~l~~l~~~a-~-~~gv~l~lEn~~~ 146 (278)
T 1i60_A 124 VLTELSDIA-E-PYGVKIALEFVGH 146 (278)
T ss_dssp HHHHHHHHH-G-GGTCEEEEECCCC
T ss_pred HHHHHHHHH-H-hcCCEEEEEecCC
Confidence 555444322 1 2578999998654
No 63
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=88.46 E-value=1.7 Score=41.95 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=60.9
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC-------------CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCC-CCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG-------------CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGY-PGY 392 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~-------------~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf-~~~ 392 (522)
++.++.+.+++.||++..+++|...+ ..+++...+.++.+.+.++.++++|. +.|.+..|+ +..
T Consensus 52 ~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~--~~v~~~~G~~~~~ 129 (290)
T 3tva_A 52 HAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGC--PAIGLHIGFVPES 129 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTC--SEEEECCCCCCCT
T ss_pred HHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEcCCCCccc
Confidence 56777777788999999988764211 12445556677778888888888884 455565443 222
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 393 TGYSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 393 ~~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
....++.+++.+++..+..- ..+++|.+||-
T Consensus 130 ~~~~~~~~~~~l~~l~~~a~--~~Gv~l~lE~~ 160 (290)
T 3tva_A 130 SSPDYSELVRVTQDLLTHAA--NHGQAVHLETG 160 (290)
T ss_dssp TSHHHHHHHHHHHHHHHHHH--TTTCEEEEECC
T ss_pred chHHHHHHHHHHHHHHHHHH--HcCCEEEEecC
Confidence 22236666666665544321 35799999995
No 64
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=87.80 E-value=0.76 Score=50.62 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=52.4
Q ss_pred CCCcceEEEeccCCCcccccc----cccCCCCCC---CCcEEEEcCCCcccccCCCCCCCCCCCeEEEEE
Q psy9378 4 RETLVPSSVWGPTCDGLDKVN----DDILLPEMP---VGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVI 66 (522)
Q Consensus 4 ~~~~~~~~i~GptCds~D~l~----~~~~LP~l~---~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~ 66 (522)
+.++...+|++=||||.+.+- ...+||+++ ..-+|-|-.+|||=-.++...|-|+.|.++.+.
T Consensus 470 e~p~~~~~l~diTCDsdg~i~~~~~~~l~lh~~~~~~~~y~lg~fl~GAYQe~lg~~HnLfg~~~~v~v~ 539 (619)
T 3nzp_A 470 EEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 539 (619)
T ss_dssp SCCCCBBCCEESCSCTTSBCCCCSSSCCBCCCCCTTTSCCEEEECSCSSSTTTTCCCTTSCCCCEEEEEE
T ss_pred CCcceeeEEecccccCCCccccCCcccccCCCCCCCCCCcEEEEEccchHHHHHhhccccCCCCCEEEEE
Confidence 456778999999999998843 346778886 557899999999999999999999999877664
No 65
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=87.58 E-value=2.2 Score=44.97 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=61.7
Q ss_pred CHHHHHHHHhhCCCeEEEEEE----ec---------CC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSF----HV---------GS-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY 392 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~Glhf----H~---------GS-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~ 392 (522)
++.++.+.+++.||.+.+++. |. |+ ...+++.+..+++.+++.++.++++|.+.-.+..|.|+...
T Consensus 108 d~~~lk~~l~e~GL~l~~i~~~~f~hp~~~~~~Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa~~lv~w~GdG~~~~ 187 (438)
T 3m0m_A 108 DPKELKARGDALGLGFDAMNSNTFSDAPGQAHSYKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFP 187 (438)
T ss_dssp CHHHHHHHHHHHTCEEEEEECCCSSCCTTCSSCCTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCCEESST
T ss_pred HHHHHHHHHHHcCCceEEeecccccCchhcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCccCCC
Confidence 788888888899999988765 33 21 22467788888999999999999998665334444444211
Q ss_pred CCCC----HHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 393 TGYS----MNRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 393 ~~~~----~~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
...+ ++.+++.++..++. .. .++++.+||
T Consensus 188 ~~~d~~~a~~rl~esL~ei~~~-A~--~gv~l~LE~ 220 (438)
T 3m0m_A 188 GQSNFTRAFERYLSAMAEIYKG-LP--DDWKLFSEH 220 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHT-CC--TTCEEEEEC
T ss_pred CcCCHHHHHHHHHHHHHHHHHh-hh--cCCEEEEcc
Confidence 1123 44555555554442 22 478999996
No 66
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=87.39 E-value=1.9 Score=41.72 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=59.9
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC--CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC------CCCCHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG--CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY------TGYSMN 398 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~--~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~------~~~~~~ 398 (522)
++.++.+.+++.||.+.++|...... ..+++...+.++.+.+.++.++++|. +.|.+..|++.. ....++
T Consensus 65 ~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa--~~v~~~~g~~~~~~~~p~~~~~~~ 142 (287)
T 3kws_A 65 RVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGS--TGVIIVPAFNGQVPALPHTMETRD 142 (287)
T ss_dssp GHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTC--SEEEECSCCTTCCSBCCSSHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEecCcCCcCCCCCCHHHHHH
Confidence 57777777888999998887642221 23666777778888888888888885 456666665321 111244
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 399 RIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 399 ~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
.+.+.+++..+.. . ..+++|.+||-
T Consensus 143 ~~~~~l~~l~~~a-~-~~Gv~l~lE~~ 167 (287)
T 3kws_A 143 FLCEQFNEMGTFA-A-QHGTSVIFEPL 167 (287)
T ss_dssp HHHHHHHHHHHHH-H-HTTCCEEECCC
T ss_pred HHHHHHHHHHHHH-H-HcCCEEEEEec
Confidence 5555554443322 1 25799999964
No 67
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=87.04 E-value=0.28 Score=50.54 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=32.6
Q ss_pred ceEEEeccCCCcccccccccCCCCCC-CCcEEEEcCCCcc
Q psy9378 8 VPSSVWGPTCDGLDKVNDDILLPEMP-VGSWLIYRDMGAY 46 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~LP~l~-~GD~l~~~~~GAY 46 (522)
.++.|+||.| +|.+..++.+ +++ +||+|+|.++|+|
T Consensus 308 ~~~~ivG~vc--mD~~~~dv~~-~~~~~GD~v~l~g~~~~ 344 (386)
T 1vfs_A 308 KIRRAAGRIA--MDQFVVDLGE-DLAEAGDEAVILGDAER 344 (386)
T ss_dssp EEEEBCSCCC--SSCEEEEEET-CCCCTTCEEEEECCGGG
T ss_pred EEeeEeeEee--cCcEEEEccC-CCCCCCCEEEEEeCCCC
Confidence 4588999999 6999999988 899 9999999999987
No 68
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=87.01 E-value=2.6 Score=40.36 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=58.8
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC-------CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG-------CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSM 397 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~-------~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~ 397 (522)
++.++.+.+++.||++.++|+..+.- ..+++...+.++.+.+.++.++++|. +.|.+..|.+... ...+
T Consensus 49 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lGa--~~v~~~~g~~~~~~~~~~~ 126 (269)
T 3ngf_A 49 DADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDC--RTLHAMSGITEGLDRKACE 126 (269)
T ss_dssp CHHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHHTTC--CEEECCBCBCTTSCHHHHH
T ss_pred CHHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHHcCC--CEEEEccCCCCCCCHHHHH
Confidence 46677777888999999998654310 12445556667777778888888884 5566655543221 1125
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 398 NRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 398 ~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
+.+++.+++..+..- ..+++|.+||
T Consensus 127 ~~~~~~l~~l~~~a~--~~Gv~l~lE~ 151 (269)
T 3ngf_A 127 ETFIENFRYAADKLA--PHGITVLVEP 151 (269)
T ss_dssp HHHHHHHHHHHHHHG--GGTCEEEECC
T ss_pred HHHHHHHHHHHHHHH--HcCCEEEEee
Confidence 555555555443321 3579999997
No 69
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=86.50 E-value=1.8 Score=41.98 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=61.3
Q ss_pred ccCcCCCHHHHHHHHhhCCCeEEEEEEec--CC--CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC-CC--C
Q psy9378 321 GCDPISEAPRLLRLAKSLDLDVVGVSFHV--GS--GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP-GY--T 393 (522)
Q Consensus 321 Gi~~e~e~~~ll~~~k~~~L~l~GlhfH~--GS--~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~-~~--~ 393 (522)
..+.+ ++.++.+.+++.||.+.++|+.. +- ...+++...+.++.+.+.++.++++|.+ .|.+.|+.. .. .
T Consensus 62 ~~~~~-~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~~~~~~~~~~ 138 (295)
T 3cqj_A 62 DWSRE-QRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIR--VIQLAGYDVYYQEAN 138 (295)
T ss_dssp GCCHH-HHHHHHHHHHHHCCEEEEEEEGGGGTSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC--EEEECCCSCSSSCCC
T ss_pred cCCHH-HHHHHHHHHHHcCCeEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCCCCcCcCH
Confidence 34444 56677777788899999988531 11 1235666777788888888888888854 455554432 11 1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCcc
Q psy9378 394 GYSMNRIAEIINVALDEYFPVEEGVSIIAEPGR 426 (522)
Q Consensus 394 ~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR 426 (522)
...++.+.+.+++..+.. . ..+++|.+|+-.
T Consensus 139 ~~~~~~~~~~l~~l~~~a-~-~~Gv~l~lEn~~ 169 (295)
T 3cqj_A 139 NETRRRFRDGLKESVEMA-S-RAQVTLAMEIMD 169 (295)
T ss_dssp HHHHHHHHHHHHHHHHHH-H-HHTCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHH-H-HhCCEEEEeeCC
Confidence 112455555555443322 1 247899999864
No 70
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=86.09 E-value=0.33 Score=50.20 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=31.1
Q ss_pred ceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCC-cccc
Q psy9378 8 VPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMG-AYTL 48 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~G-AY~~ 48 (522)
..+.|+||.| +|.+..++ +|++++||+++|.+.+ +++.
T Consensus 309 ~~~~ivG~vc--mD~~~vd~-~~~~~~GD~v~l~g~~~~~~~ 347 (391)
T 2vd8_A 309 XRVPIVGRVT--MDQFMIHL-PCEVPLGTXVTLIGRQGDEYI 347 (391)
T ss_dssp EEEEEESCCC--SSCEEEEE-SSCCCTTCEEEEEEEETTEEE
T ss_pred eecceeccee--cceeEeec-CCCCCCCCEEEEECCCCCCCC
Confidence 4588999999 69999999 8999999999987643 4443
No 71
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=86.01 E-value=1.4 Score=42.01 Aligned_cols=95 Identities=24% Similarity=0.226 Sum_probs=58.3
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC-C--CCCHHHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY-T--GYSMNRIAEI 403 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~-~--~~~~~~~a~~ 403 (522)
++.++.+.+++.||.+.+++.+..-...+++.+.+.++.+.+.++.++++|.+.=.+..| +++.. . ...++.+++.
T Consensus 46 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g-~~~~~~~~~~~~~~~~~~~ 124 (275)
T 3qc0_A 46 GLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAG-GLPGGSKNIDAARRMVVEG 124 (275)
T ss_dssp CHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECB-CCCTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeC-CCCCCCcCHHHHHHHHHHH
Confidence 566777777888999988887532222356677777888888888888998654444432 33311 1 1124444454
Q ss_pred HHHHHHhhCCCCCCcEEEecC
Q psy9378 404 INVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 404 I~~~l~~~~~~~~~~~li~EP 424 (522)
+++..+..- ..+++|.+||
T Consensus 125 l~~l~~~a~--~~gv~l~lE~ 143 (275)
T 3qc0_A 125 IAAVLPHAR--AAGVPLAIEP 143 (275)
T ss_dssp HHHHHHHHH--HHTCCEEECC
T ss_pred HHHHHHHHH--HcCCEEEEeE
Confidence 544333211 2478999998
No 72
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=85.69 E-value=1.2 Score=42.49 Aligned_cols=96 Identities=15% Similarity=0.011 Sum_probs=54.6
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
++.++.+.+++.||++.++|+...-.. ..+.+.+.++.+.+.++.++++|.+.=.+.++.|........++.+.+.+++
T Consensus 48 ~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~ 126 (281)
T 3u0h_A 48 GDAAVEAMFQRRGLVLANLGLPLNLYD-SEPVFLRELSLLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQ 126 (281)
T ss_dssp CHHHHHHHHHTTTCEECCEECCSCTTS-CHHHHHHHHHTHHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEecccccccC-CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHHH
Confidence 566666777888999988876532211 2234566677777888888888854322222222111111124455555555
Q ss_pred HHHhhCCCCCCcEEEecCc
Q psy9378 407 ALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 407 ~l~~~~~~~~~~~li~EPG 425 (522)
..+.. . ..+++|.+||-
T Consensus 127 l~~~a-~-~~Gv~l~lE~~ 143 (281)
T 3u0h_A 127 VAVEL-L-PLGMRVGLEYV 143 (281)
T ss_dssp HHHHH-G-GGTCEEEEECC
T ss_pred HHHHH-H-HcCCEEEEEec
Confidence 44322 1 35789999975
No 73
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=84.85 E-value=5.9 Score=37.28 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=58.8
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCC-------CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC-CCC--CCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGS-------GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP-GYT--GYS 396 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS-------~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~-~~~--~~~ 396 (522)
++.++.+.+++.||.+.++|+..+. ...+++...+.++.+.+.++.++++|. +.|.+..|.. ... ...
T Consensus 41 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~v~~~~g~~~~~~~~~~~ 118 (260)
T 1k77_A 41 STLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNC--EQVHVMAGVVPAGEDAERY 118 (260)
T ss_dssp CHHHHHHHHHHTTCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHHHHHHHTTC--SEEECCCCBCCTTSCHHHH
T ss_pred CHHHHHHHHHHcCCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHHHHHHHHcCC--CEEEECcCCCCCCCCHHHH
Confidence 4566667778899999999875431 122455556677778888888888884 4566655542 111 112
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 397 MNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 397 ~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
++.+.+.+++..+.. . ..+++|.+||-
T Consensus 119 ~~~~~~~l~~l~~~a-~-~~gv~l~~E~~ 145 (260)
T 1k77_A 119 RAVFIDNIRYAADRF-A-PHGKRILVEAL 145 (260)
T ss_dssp HHHHHHHHHHHHHHH-G-GGTCEEEECCC
T ss_pred HHHHHHHHHHHHHHH-H-HcCCEEEEEeC
Confidence 444555555444332 1 25799999985
No 74
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=84.42 E-value=4.9 Score=39.93 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=44.6
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCC--------CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGS--------GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGY 389 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS--------~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf 389 (522)
++.++.+.+++.||.+..++.+..+ ...+++.+..+++.+++.++.++++|.+ .|.+.+|.
T Consensus 62 ~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~--~vv~~~g~ 130 (333)
T 3ktc_A 62 TLSEVKDALKDAGLKAIGITPEIYLQKWSRGAFTNPDPAARAAAFELMHESAGIVRELGAN--YVKVWPGQ 130 (333)
T ss_dssp CHHHHHHHHHHHTCEEEEEEECTTSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCS--EEEECCTT
T ss_pred HHHHHHHHHHHcCCeEEEEecCcCcccccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCC
Confidence 6777777888899999998875321 1245677778888888888999999854 45565553
No 75
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=83.38 E-value=0.91 Score=43.68 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=55.6
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCC--C--CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGS--G--CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSMNRI 400 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS--~--~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~~~~ 400 (522)
++.++.+.+++.||++..+..|..- . ..+++.+.+.++.+.+.++.++++|.+ +|.+..|..... ...++.+
T Consensus 48 ~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~g~~~~~~~~~~~~~~ 125 (287)
T 2x7v_A 48 AATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICRKLGIR--YLNIHPGSHLGTGEEEGIDRI 125 (287)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC--EEEECCEECTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCHHHHHHHH
Confidence 5666667777889986444455432 1 235566677788888888888888854 455543332211 1124444
Q ss_pred HHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 401 AEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 401 a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
++.+++..++ ..+++|.+|+-
T Consensus 126 ~~~l~~l~~~----~~gv~l~lEn~ 146 (287)
T 2x7v_A 126 VRGLNEVLNN----TEGVVILLENV 146 (287)
T ss_dssp HHHHHHHHTT----CCSCEEEEECC
T ss_pred HHHHHHHHcc----cCCCEEEEeCC
Confidence 5555544432 25799999985
No 76
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=83.32 E-value=11 Score=35.49 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=56.6
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHH-HHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRI-AEIIN 405 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~-a~~I~ 405 (522)
++.++.+.+++.||.+.++|....-...+. . ..+.+++.++.++++|. +.|.+.+|.... ..++.+ .+.++
T Consensus 52 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~-~---~~~~~~~~i~~a~~lG~--~~v~~~~g~~~~--~~~~~~~~~~l~ 123 (272)
T 2q02_A 52 NYNQVRNLAEKYGLEIVTINAVYPFNQLTE-E---VVKKTEGLLRDAQGVGA--RALVLCPLNDGT--IVPPEVTVEAIK 123 (272)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEETTTTSCCH-H---HHHHHHHHHHHHHHHTC--SEEEECCCCSSB--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEechhhhccCCcHH-H---HHHHHHHHHHHHHHhCC--CEEEEccCCCch--hHHHHHHHHHHH
Confidence 677777778889999999988654322222 2 23445566677777774 456655554322 346666 66666
Q ss_pred HHHHhhCCCCCCcEEEecCcc
Q psy9378 406 VALDEYFPVEEGVSIIAEPGR 426 (522)
Q Consensus 406 ~~l~~~~~~~~~~~li~EPGR 426 (522)
+..+.. . ..+++|.+||-.
T Consensus 124 ~l~~~a-~-~~gv~l~~E~~~ 142 (272)
T 2q02_A 124 RLSDLF-A-RYDIQGLVEPLG 142 (272)
T ss_dssp HHHHHH-H-TTTCEEEECCCC
T ss_pred HHHHHH-H-HcCCEEEEEecC
Confidence 544332 1 357999999863
No 77
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=83.07 E-value=0.56 Score=48.45 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.4
Q ss_pred ceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCC-ccc
Q psy9378 8 VPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMG-AYT 47 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~G-AY~ 47 (522)
.++.|+|+.| +|.+..++. |++++||+|+|.+.+ +++
T Consensus 302 ~~~~ivG~vc--mD~~~vdv~-~~~~~GD~v~l~g~~~~~~ 339 (388)
T 1bd0_A 302 QKAPIVGRIC--MDQCMIRLP-GPLPVGTKVTLIGRQGDEV 339 (388)
T ss_dssp EEEEEESCCC--SSCEEEECS-SCCCTTCEEEEEEEETTEE
T ss_pred EEeeEEeecc--cceEEEECC-CCCCCCCEEEEecCCCCCC
Confidence 3678999999 699998887 899999999987643 444
No 78
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=82.73 E-value=3.8 Score=39.44 Aligned_cols=95 Identities=14% Similarity=-0.005 Sum_probs=59.2
Q ss_pred CHHHHHHHHhhCCCeEEEEEEe-cC--CCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEE--EcCCCCCCC--CCC---
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFH-VG--SGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLD--LGGGYPGYT--GYS--- 396 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH-~G--S~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~Ld--IGGGf~~~~--~~~--- 396 (522)
++.++.+.+++.||.+.+.|.- .. -...+++...+.++.+.+.++.++++|.+ .|. +++|++..+ ..+
T Consensus 48 ~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~--~v~~~~~~~~~~~~~~~~~~~~ 125 (294)
T 3vni_A 48 QINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVH--LIGGALYSYWPIDYTKTIDKKG 125 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCC--EEEESTTSCSSCCTTSCCCHHH
T ss_pred HHHHHHHHHHHcCCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--eeeccccCCCCCcCCCCCCHHH
Confidence 5677777788899999874321 11 11235667777888888888888888854 444 567775332 223
Q ss_pred -HHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 397 -MNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 397 -~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
++.+.+.+++..+..- ..+++|.+||-
T Consensus 126 ~~~~~~~~l~~l~~~a~--~~Gv~l~lEn~ 153 (294)
T 3vni_A 126 DWERSVESVREVAKVAE--ACGVDFCLEVL 153 (294)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHH--HcCCEEEEEec
Confidence 4444444544433221 25799999974
No 79
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=81.85 E-value=1.3 Score=42.41 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=56.7
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC----CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC---CCCHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG----CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT---GYSMNR 399 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~----~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~---~~~~~~ 399 (522)
++.++.+.+++.||++..+..|..-. ..+++.+.+.++.+.+.++.++++|. +.|.+..|..... ...++.
T Consensus 48 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~A~~lGa--~~v~~~~g~~~~~~~~~~~~~~ 125 (285)
T 1qtw_A 48 TIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGL--SLLNFHPGSHLMQISEEDCLAR 125 (285)
T ss_dssp HHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC--CEEEECCCBCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCceeEEecCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEECcCCCCCCCCHHHHHHH
Confidence 56666677788888864445554321 13556677778888888888888885 4555544432211 112445
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 400 IAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 400 ~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
+.+.+++.+++ ..+++|.+|+=
T Consensus 126 ~~~~l~~l~a~----~~gv~l~lEn~ 147 (285)
T 1qtw_A 126 IAESINIALDK----TQGVTAVIENT 147 (285)
T ss_dssp HHHHHHHHHHH----CSSCEEEEECC
T ss_pred HHHHHHHHHhc----cCCCEEEEecC
Confidence 55556655543 25799999974
No 80
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=79.99 E-value=4.8 Score=39.52 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=55.2
Q ss_pred CHHHHHHHHhhCCCeEEEEEEec-CCCCCCh----------HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHV-GSGCGDP----------PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGY 395 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~-GS~~~~~----------~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~ 395 (522)
++.++.+.+++.||++.++|+-. +....++ +...+.++.+.+.++.++++|. +.|.++++-......
T Consensus 60 ~~~~~~~~l~~~GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~--~~v~~~~~~~~~~~~ 137 (303)
T 3l23_A 60 PMMDFKKMAEDAGLKIISSHVNPVDTSISDPFKAMIFKYSKEVTPKIMEYWKATAADHAKLGC--KYLIQPMMPTITTHD 137 (303)
T ss_dssp EHHHHHHHHHHTTCEEEEEECCCBCTTCSSTTTTBCCSCCTTTHHHHHHHHHHHHHHHHHTTC--SEEEECSCCCCCSHH
T ss_pred CHHHHHHHHHHcCCeEEEEecccccccccCcccccccccchhhHHHHHHHHHHHHHHHHHcCC--CEEEECCCCCCCCHH
Confidence 45666677788999999887544 1111122 1234456666677777888884 456665432211222
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCcE--EEecCc
Q psy9378 396 SMNRIAEIINVALDEYFPVEEGVS--IIAEPG 425 (522)
Q Consensus 396 ~~~~~a~~I~~~l~~~~~~~~~~~--li~EPG 425 (522)
.++.+++.+++..+..- ..+++ |.+|+=
T Consensus 138 ~~~~~~~~l~~l~~~a~--~~Gv~~~l~~En~ 167 (303)
T 3l23_A 138 EAKLVCDIFNQASDVIK--AEGIATGFGYHNH 167 (303)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHH--HCCCcceEEEccC
Confidence 35666666665544321 25789 998864
No 81
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=79.87 E-value=5.4 Score=38.21 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=9.0
Q ss_pred HHHHHHHhhCCCeEEEEEEe
Q psy9378 329 PRLLRLAKSLDLDVVGVSFH 348 (522)
Q Consensus 329 ~~ll~~~k~~~L~l~GlhfH 348 (522)
.++.+.+++.||.+.+++.|
T Consensus 51 ~~~~~~l~~~gl~~~~~~~~ 70 (286)
T 3dx5_A 51 ERELNCLKDKTLEITMISDY 70 (286)
T ss_dssp HHHHHHTGGGTCCEEEEECC
T ss_pred HHHHHHHHHcCCeEEEEecC
Confidence 33333344445555554444
No 82
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=78.64 E-value=16 Score=35.33 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=55.2
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
++.++.+.+++.||.+..++....-...++.... .++.+.+.++.++++|. +.|.+|.+ + ..+++.+.+.+++
T Consensus 69 ~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~A~~lGa--~~v~~g~~-~---~~~~~~~~~~l~~ 141 (296)
T 2g0w_A 69 TDEDMLRILDEHNMKVTEVEYITQWGTAEDRTAE-QQKKEQTTFHMARLFGV--KHINCGLL-E---KIPEEQIIVALGE 141 (296)
T ss_dssp CHHHHHHHHHHTTCEEEEEECBCCCSSTTTCCHH-HHHHHHHHHHHHHHHTC--CEEEECCC-S---CCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCceEeehhhhccccCChHHHH-HHHHHHHHHHHHHHcCC--CEEEEcCC-C---CCCHHHHHHHHHH
Confidence 5667777778899999988763211112222222 35556667777778874 45666544 1 1247777787777
Q ss_pred HHHhhCCCCCCcEEEecCc
Q psy9378 407 ALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 407 ~l~~~~~~~~~~~li~EPG 425 (522)
..+.. .+++|.+||-
T Consensus 142 l~~~a----~Gv~l~lE~~ 156 (296)
T 2g0w_A 142 LCDRA----EELIIGLEFM 156 (296)
T ss_dssp HHHHH----TTSEEEEECC
T ss_pred HHHHh----cCCEEEEEec
Confidence 66554 4689999974
No 83
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=77.99 E-value=3.7 Score=45.53 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCcceEEEeccCCCcc----ccc-----ccccCCCCCCCC--cEEEEcCCCcccccCCCCCCCCCCCeEEEEE
Q psy9378 4 RETLVPSSVWGPTCDGL----DKV-----NDDILLPEMPVG--SWLIYRDMGAYTLPVASTFNGFPIPKVHAVI 66 (522)
Q Consensus 4 ~~~~~~~~i~GptCds~----D~l-----~~~~~LP~l~~G--D~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~ 66 (522)
+.+....+|++=||||. +.+ ....+||+++.| -+|-|-.+|||=-.++...|-|+.|.++.+.
T Consensus 515 e~p~~~~~l~diTCDsdG~i~~fi~~~~~~~~l~lh~~~~~e~y~lg~Fl~GAYQe~lg~~HnLfg~~~~v~v~ 588 (666)
T 3nzq_A 515 QVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVF 588 (666)
T ss_dssp SCCCEEEEEEESCSSTTCBCCCEEETTEEESSEEECSCCTTSCCEEEECSCCSSCGGGCCCTTSCCCCEEEEEE
T ss_pred CCcceeeEEeccccCCCCchhhccCCCCccccccccccCCCCccEEEEEecchhhHHhccccccCCCCCEEEEE
Confidence 45678899999999997 222 234678888665 6889999999999999999999999887664
No 84
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=75.36 E-value=35 Score=35.22 Aligned_cols=142 Identities=19% Similarity=0.227 Sum_probs=75.1
Q ss_pred eEEEEcCCHHHHHHHHHcCCCEEEE-c-CHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccc---cCcCCCHHHHHH
Q psy9378 259 GFDCASKPISHIRYAAEYGIDTMTF-D-NEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFG---CDPISEAPRLLR 333 (522)
Q Consensus 259 GfDvaSK~~~eL~~A~~~Gv~~i~v-D-S~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFG---i~~e~e~~~ll~ 333 (522)
|+|+++ +....++|+...+. . ..+.++.|++..-+ -|-|||-.+.... .+..+| .+.+ .+.++++
T Consensus 27 G~Dis~-----~~~~e~~G~~y~~~~G~~~d~~~ilk~~G~N-~VRlrvwv~p~~~---~g~~y~~g~~d~~-~~~~~a~ 96 (399)
T 1ur4_A 27 GVDVSS-----IIALEESGVAFYNESGKKQDIFKTLKEAGVN-YVRVRIWNDPYDA---NGNGYGGGNNDLE-KAIQIGK 96 (399)
T ss_dssp EEECTT-----HHHHHHTTCCCBCTTSCBCCHHHHHHHTTCC-EEEEEECSCCBCT---TCCBCSTTCCCHH-HHHHHHH
T ss_pred EEehhh-----hHHHHHcCCeeeCCCCccchHHHHHHHCCCC-EEEEeeecCCccc---ccCccCCCCCCHH-HHHHHHH
Confidence 778777 33344667652221 0 13345555554322 2334553221110 112232 2334 5666777
Q ss_pred HHhhCCCeEEEEEEec-------CCCCC-------ChHHHHHH-HHHHHHHHHHHhhcCCCccEEEEcC----CCCCCCC
Q psy9378 334 LAKSLDLDVVGVSFHV-------GSGCG-------DPPVFGRA-IYSARQIFDLGNSLGFSMRVLDLGG----GYPGYTG 394 (522)
Q Consensus 334 ~~k~~~L~l~GlhfH~-------GS~~~-------~~~~~~~a-i~~~~~l~~~~~~~G~~l~~LdIGG----Gf~~~~~ 394 (522)
++++.||++. |.||. |+|.. +.+.+.+. .+.++.+++.+++.|..+.++-+|- |+.+ .
T Consensus 97 ~Ak~~GLkVl-ldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~--~ 173 (399)
T 1ur4_A 97 RATANGMKLL-ADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAG--E 173 (399)
T ss_dssp HHHHTTCEEE-EEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTT--B
T ss_pred HHHHCCCEEE-EEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCC--c
Confidence 8889999854 56775 33322 23344433 3355666777788888888998884 4422 2
Q ss_pred CCHHHHHHHHH---HHHHhhCC
Q psy9378 395 YSMNRIAEIIN---VALDEYFP 413 (522)
Q Consensus 395 ~~~~~~a~~I~---~~l~~~~~ 413 (522)
.+++.+++.++ +++++.++
T Consensus 174 ~~~~~la~ll~ag~~aVR~v~p 195 (399)
T 1ur4_A 174 TDWAKMSQLFNAGSQAVRETDS 195 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHHHHHhCC
Confidence 35677666554 45555544
No 85
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=75.17 E-value=1.5 Score=45.03 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=32.5
Q ss_pred ceEEEeccCCCcccccccccCCCCCCCCcEEEEcC-CCccccc
Q psy9378 8 VPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRD-MGAYTLP 49 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~-~GAY~~~ 49 (522)
..+.|.|+.| +|.+..++.+ ++++||+++|.+ -|+|+.+
T Consensus 304 ~~~~ivG~vc--mD~~~vdv~~-~~~~GD~v~l~g~~~~~~~~ 343 (380)
T 3co8_A 304 QKCRQVGQIA--MDQMMVALPH-EYPIGTEVTLIGKSGKYENT 343 (380)
T ss_dssp EEEEEESCCC--SSCEEEEESS-CCCTTCEEEEEEEETTEEEC
T ss_pred EEeEEecccc--cceEEEECCC-CCCCCCEEEEEeCCCCCCCC
Confidence 3578999999 5999999888 899999999887 4777654
No 86
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=75.06 E-value=8.5 Score=36.96 Aligned_cols=94 Identities=12% Similarity=-0.016 Sum_probs=55.4
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC-CC------------C
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP-GY------------T 393 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~-~~------------~ 393 (522)
++.++.+.+++.||.+..+++. . ..+++...+.++.+.+.++.++++|.+.-.+..|+++. +. .
T Consensus 56 ~~~~~~~~l~~~gl~~~~~~~~--~-~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~ 132 (301)
T 3cny_A 56 GPEKLNYELKLRNLEIAGQWFS--S-YIIRDGIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFT 132 (301)
T ss_dssp CHHHHHHHHHHTTCEECEEEEE--E-CHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCC
T ss_pred CHHHHHHHHHHCCCeEEEEecc--C-CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCc
Confidence 3556666778899999887432 2 22355566677888888888889986544444432211 11 1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 394 GYSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 394 ~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
...++.+++.+++..+..- ..+++|.+|+-
T Consensus 133 ~~~~~~~~~~l~~l~~~a~--~~gv~l~lE~~ 162 (301)
T 3cny_A 133 DKEWDEVCKGLNHYGEIAA--KYGLKVAYHHH 162 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHH--HcCCEEEEecC
Confidence 1124455555554443221 25789999984
No 87
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=73.53 E-value=43 Score=33.41 Aligned_cols=81 Identities=11% Similarity=0.203 Sum_probs=47.4
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCC-------CC-------CChHHHHHHHHH-HHHHHHHHhhcCCCccEEEEcC----
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGS-------GC-------GDPPVFGRAIYS-ARQIFDLGNSLGFSMRVLDLGG---- 387 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS-------~~-------~~~~~~~~ai~~-~~~l~~~~~~~G~~l~~LdIGG---- 387 (522)
...++++++++.|+++. |-||.+. |. .+.+.+.+.+.+ +..+++.+++.|..+.++-+|=
T Consensus 61 ~~~~~~~~ak~~Gl~v~-ld~hysd~wadP~~q~~p~~W~~~~~~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~ 139 (334)
T 1fob_A 61 YNLELAKRVKAAGMSLY-LDLHLSDTWADPSDQTTPSGWSTTDLGTLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRA 139 (334)
T ss_dssp HHHHHHHHHHHTTCEEE-EEECCSSSCCBTTBCBCCTTSCSSCHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGG
T ss_pred HHHHHHHHHHHCCCEEE-EEeccCCCCCCcccccCccccccCChHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecCcc
Confidence 67778888999999854 4466521 11 123344444433 4555666777888888888873
Q ss_pred CCC--CCCCCCHHHHHHHHHHHH
Q psy9378 388 GYP--GYTGYSMNRIAEIINVAL 408 (522)
Q Consensus 388 Gf~--~~~~~~~~~~a~~I~~~l 408 (522)
|+- .....+++.+++.++++.
T Consensus 140 G~lwp~g~~~~~~~l~~~~~~a~ 162 (334)
T 1fob_A 140 GLLWPLGETSSYSNIGALLHSGA 162 (334)
T ss_dssp CSSBTTTSTTCHHHHHHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHH
Confidence 331 111224677776665544
No 88
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=73.29 E-value=10 Score=36.47 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=56.5
Q ss_pred CHHHHHHHHhhCCCeEEEEEEe-------cCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEE-EcCCCCCCC--CCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFH-------VGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLD-LGGGYPGYT--GYS 396 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH-------~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~Ld-IGGGf~~~~--~~~ 396 (522)
++.++.+.+++.||.+.++|.. ..-...+.+...+.++.+.+.++.++++|.+ +|. ...|..... ...
T Consensus 69 ~~~~~~~~l~~~gl~~~~~~~~~p~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~~g~~~~~~~~~~ 146 (290)
T 2zvr_A 69 DWNEVKILSEELNLPICAIGTGQAYLADGLSLTHPNDEIRKKAIERVVKHTEVAGMFGAL--VIIGLVRGRREGRSYEET 146 (290)
T ss_dssp CHHHHHHHHHHHTCCEEEEECTHHHHTTCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCE--EEESGGGCCCTTSCHHHH
T ss_pred hHHHHHHHHHHcCCeEEEEeccCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEecCCCCCCCcCHHHH
Confidence 6777777788889999999882 1112235555677788888888888888853 443 212431111 112
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 397 MNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 397 ~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
++.+.+.+++..+ +.. . ++|.+||-
T Consensus 147 ~~~~~~~l~~l~~-~a~--~-v~l~lEn~ 171 (290)
T 2zvr_A 147 EELFIESMKRLLE-LTE--H-AKFVIEPL 171 (290)
T ss_dssp HHHHHHHHHHHHH-HCS--S-CCEEECCC
T ss_pred HHHHHHHHHHHHH-Hhc--c-CEEEEEeC
Confidence 4455555555443 332 3 89999984
No 89
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=73.19 E-value=49 Score=30.11 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=83.7
Q ss_pred HHHHHHHHhCCCCeEEeeecCCCcHH-HHHHHHHcCC-eEEEEcCC-----HHHHHHHHHcCCCEEE----EcC-HHHHH
Q psy9378 223 RKHEDWKLKLPRVDPYYAVKCNDSQM-VLEVLAALGT-GFDCASKP-----ISHIRYAAEYGIDTMT----FDN-EIELQ 290 (522)
Q Consensus 223 ~ni~~l~~~lp~~~i~YAvKAN~~~~-Vlk~L~~~G~-GfDvaSK~-----~~eL~~A~~~Gv~~i~----vDS-~~EL~ 290 (522)
+.++++++.+++..+++-.|....+. +++.+.+.|+ ++-+.... .+.++.+.++|+..+. ..+ .++++
T Consensus 42 ~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~ 121 (211)
T 3f4w_A 42 NAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVR 121 (211)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH
Confidence 55777777777777777788776554 4888888886 55554422 3344556677875332 133 35567
Q ss_pred HHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhC--CCeEEEEEEecCCCCCChHHHHHHHHHHHH
Q psy9378 291 KVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSL--DLDVVGVSFHVGSGCGDPPVFGRAIYSARQ 368 (522)
Q Consensus 291 ~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~--~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~ 368 (522)
++.+..... |-++++.. +.+|+. . ..+.++.+++. ++.+. ++.++. ++...+.
T Consensus 122 ~~~~~g~d~---i~v~~g~~------g~~~~~--~--~~~~i~~l~~~~~~~~i~-----~~gGI~-~~~~~~~------ 176 (211)
T 3f4w_A 122 LLEEAGADM---LAVHTGTD------QQAAGR--K--PIDDLITMLKVRRKARIA-----VAGGIS-SQTVKDY------ 176 (211)
T ss_dssp HHHHHTCCE---EEEECCHH------HHHTTC--C--SHHHHHHHHHHCSSCEEE-----EESSCC-TTTHHHH------
T ss_pred HHHHcCCCE---EEEcCCCc------ccccCC--C--CHHHHHHHHHHcCCCcEE-----EECCCC-HHHHHHH------
Confidence 777665432 34444321 134442 1 23445555442 44332 334442 3322222
Q ss_pred HHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q psy9378 369 IFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDE 410 (522)
Q Consensus 369 l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~ 410 (522)
.+ .| ...+-+|..+-. ..+..+..+.+++.+++
T Consensus 177 -~~----~G--ad~vvvGsai~~--~~d~~~~~~~l~~~~~~ 209 (211)
T 3f4w_A 177 -AL----LG--PDVVIVGSAITH--AADPAGEARKISQVLLQ 209 (211)
T ss_dssp -HT----TC--CSEEEECHHHHT--CSSHHHHHHHHHHHHHH
T ss_pred -HH----cC--CCEEEECHHHcC--CCCHHHHHHHHHHHHhh
Confidence 22 13 567888887632 24567777777777665
No 90
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=73.11 E-value=6.7 Score=40.05 Aligned_cols=97 Identities=21% Similarity=0.167 Sum_probs=60.2
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecC--------C-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCC-C----
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVG--------S-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPG-Y---- 392 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~G--------S-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~-~---- 392 (522)
++.++.+.+++.||.+..+|.... + ...+.+.+..+++.+.+.++.++++|. +.|.+.+|..+ .
T Consensus 70 ~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa--~~vv~~~G~~g~~~~~~ 147 (387)
T 1bxb_A 70 IVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGA--EIYVVWPGREGAEVEAT 147 (387)
T ss_dssp HHHHHHHHHHHHTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC--CEEEECCTTCEESCGGG
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CEEEECCCCCCccCCcc
Confidence 455666667788999988885432 1 123455677778888888888888885 45666666421 1
Q ss_pred --CCCCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 393 --TGYSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 393 --~~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
....++.+.+.+++..+..-..+.++++.+||-
T Consensus 148 ~~~~~~~~~~~e~L~~l~~~a~~~g~gv~l~lE~~ 182 (387)
T 1bxb_A 148 GKARKVWDWVREALNFMAAYAEDQGYGYRFALEPK 182 (387)
T ss_dssp CGGGTHHHHHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 112356666666654433211012799999985
No 91
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=71.91 E-value=7 Score=40.03 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=57.5
Q ss_pred CHHHHHHHHhhCCCeEEEEEEec--------CC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC-C--C
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHV--------GS-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY-T--G 394 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~--------GS-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~-~--~ 394 (522)
.+.++.+.+++.||++..++... |. ...+.+.+.++++.+.+.++.++++|.+ .|.+-+|..+. + .
T Consensus 70 ~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~--~vvv~~G~~g~~~~~~ 147 (394)
T 1xla_A 70 ILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAE--TFVMWGGREGSEYDGS 147 (394)
T ss_dssp HHHHHHHHHHHHCCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHTTCS--EEEECCTTCEESSGGG
T ss_pred HHHHHHHHHHHcCCeEEEEecCccCCccccCCccCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCccccccc
Confidence 35555566677899998887632 11 1234566777888888999999999854 55565554311 0 1
Q ss_pred CC----HHHHHHHHHHHHHhhCCCCCC--cEEEecCc
Q psy9378 395 YS----MNRIAEIINVALDEYFPVEEG--VSIIAEPG 425 (522)
Q Consensus 395 ~~----~~~~a~~I~~~l~~~~~~~~~--~~li~EPG 425 (522)
.+ ++.+++.+++..+.. . ..+ ++|.+||=
T Consensus 148 ~~~~~~~~~~~e~L~~l~~~A-~-~~G~~v~l~lE~~ 182 (394)
T 1xla_A 148 KDLAAALDRMREGVDTAAGYI-K-DKGYNLRIALEPK 182 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-H-HHTCCCEEEECCC
T ss_pred cCHHHHHHHHHHHHHHHHHHH-H-hcCCCeEEEEecC
Confidence 22 445555555433221 1 135 89999975
No 92
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=71.07 E-value=33 Score=33.08 Aligned_cols=93 Identities=15% Similarity=0.041 Sum_probs=56.3
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC----CCC-hHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG----CGD-PPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIA 401 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~----~~~-~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a 401 (522)
++.++.+.+++.||.... +|.... ..+ ++.+.++++.+++.++.++++|.+ .|.+-.|.... .+.++..
T Consensus 54 ~~~~~~~~l~~~gl~~~~--~h~~~~~nl~s~d~~~~r~~~~~~~~~~i~~A~~lGa~--~vv~h~g~~~~--~~~~~~~ 127 (303)
T 3aal_A 54 NIEAGRQHMQAHGIEEIV--VHAPYIINIGNTTNLDTFSLGVDFLRAEIERTEAIGAK--QLVLHPGAHVG--AGVEAGL 127 (303)
T ss_dssp CHHHHHHHHHHTTCCEEE--EECCTTCCTTCSSCHHHHHHHHHHHHHHHHHHHHHTCS--EEEECCEECTT--SCHHHHH
T ss_pred HHHHHHHHHHHcCCceEE--EeccccccCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCcCCC--CCHHHHH
Confidence 677777778888985433 443221 124 666777788888888888888854 44443333211 1344444
Q ss_pred HHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 402 EIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
+.+.+.+++....-.+++|.+|+=
T Consensus 128 ~~~~~~l~~l~~~a~gv~l~lEn~ 151 (303)
T 3aal_A 128 RQIIRGLNEVLTREQNVQIALETM 151 (303)
T ss_dssp HHHHHHHHHHCCSSCSCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecC
Confidence 445555555432125799999984
No 93
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=70.22 E-value=6.5 Score=40.11 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=58.2
Q ss_pred CHHHHHHHHhhCCCeEEEEEEec--------CC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC-C--C
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHV--------GS-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY-T--G 394 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~--------GS-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~-~--~ 394 (522)
++.++.+.+++.||.+.++|... |. ...+.+...++++.+.+.++.++++|.+ .|.+.+|..+. + .
T Consensus 70 ~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~--~vvv~~g~~~~~~~~~ 147 (386)
T 1muw_A 70 HIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAK--TYVAWGGREGAESGAA 147 (386)
T ss_dssp HHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCS--EEEECCTTCEESSTTS
T ss_pred HHHHHHHHHHHhCCeEEEEecccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCccccccc
Confidence 45566666677899999888632 11 1234556777888888889999999854 66666665321 1 1
Q ss_pred CC----HHHHHHHHHHHHHhhCCCCCC--cEEEecCc
Q psy9378 395 YS----MNRIAEIINVALDEYFPVEEG--VSIIAEPG 425 (522)
Q Consensus 395 ~~----~~~~a~~I~~~l~~~~~~~~~--~~li~EPG 425 (522)
.+ ++.+++.+++..+.. . ..+ ++|.+||-
T Consensus 148 ~~~~~~~~~~~e~L~~l~~~A-~-~~G~~v~l~lE~~ 182 (386)
T 1muw_A 148 KDVRVALDRMKEAFDLLGEYV-T-SQGYDIRFAIEPK 182 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-H-HHTCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHHHH-H-hcCCCeEEEEeeC
Confidence 23 445555555443221 1 134 89999985
No 94
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=68.38 E-value=6 Score=40.49 Aligned_cols=97 Identities=24% Similarity=0.198 Sum_probs=57.1
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecC--------C-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCC-CC--C
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVG--------S-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPG-YT--G 394 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~G--------S-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~-~~--~ 394 (522)
++.++.+.+++.||.+..+|.... + ...+.+.+..+++.+++.++.++++|.+ .|.+-+|..+ .+ .
T Consensus 70 ~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~spd~~~r~~~i~~~~~~i~~A~~LGa~--~vv~~~G~~g~~~~~~ 147 (393)
T 1xim_A 70 IIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAK--TLVLWGGREGAEYDSA 147 (393)
T ss_dssp HHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCC--EEEEECTTSEESSGGG
T ss_pred HHHHHHHHHHHhCCEEEEEecCCcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCCCcCCcc
Confidence 455666667788999988876431 1 1235566777888888888988999854 4445343211 11 1
Q ss_pred CC----HHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 395 YS----MNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 395 ~~----~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
.+ ++.+.+.+++..+..-..+.++++.+||=
T Consensus 148 ~~~~~~~~~~~e~L~~l~~~A~~~g~gv~l~lE~~ 182 (393)
T 1xim_A 148 KDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPK 182 (393)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 23 34455555443332210012799999985
No 95
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=67.86 E-value=4.7 Score=39.66 Aligned_cols=95 Identities=22% Similarity=0.159 Sum_probs=55.7
Q ss_pred CHHHHHHHHhhCCCeEEEEEEec-C-----C-CC--------------CCh-HHHHHHHHHHHHHHHHHhhcCCCccEEE
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHV-G-----S-GC--------------GDP-PVFGRAIYSARQIFDLGNSLGFSMRVLD 384 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~-G-----S-~~--------------~~~-~~~~~ai~~~~~l~~~~~~~G~~l~~Ld 384 (522)
++.++.+.+++.||.+.++++|. | . .. .++ +...+.++.+.+.++.++++|.+ .|.
T Consensus 52 ~~~~~~~~l~~~gl~i~~~~~~~~g~~~~~p~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~--~v~ 129 (340)
T 2zds_A 52 YVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVD--TVI 129 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEHHHHHHHHCSCCSHHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCS--EEE
T ss_pred HHHHHHHHHHHcCCeEEEeeccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHcCCC--EEE
Confidence 56777777888999999999987 1 1 10 032 34556678888888888888854 444
Q ss_pred EcCCCCC-C--C----------CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 385 LGGGYPG-Y--T----------GYSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 385 IGGGf~~-~--~----------~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
+-.|... . + ...++.+++.+++..+.. . ..+++|.+|+-
T Consensus 130 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~-~~Gv~l~lEn~ 181 (340)
T 2zds_A 130 GFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVF-D-AEGVRFAHEVH 181 (340)
T ss_dssp ECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHH-H-HHTCEEEEECC
T ss_pred EecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHH-H-HcCCEEEEEcC
Confidence 4333211 0 0 011334444444433221 1 24689999984
No 96
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=67.63 E-value=3.1 Score=42.10 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=29.7
Q ss_pred ceEEEeccCCCcccccccccC-CCCCCCCcEEEEcCCC
Q psy9378 8 VPSSVWGPTCDGLDKVNDDIL-LPEMPVGSWLIYRDMG 44 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~-LP~l~~GD~l~~~~~G 44 (522)
.++.|.|+.|+ |.+..++. +|++++||+|.|...+
T Consensus 291 ~~~~ivG~vcm--D~~~vd~~~~~~~~~GD~v~l~~~~ 326 (357)
T 1rcq_A 291 KPGRLVGRVSM--DMLTVDLTDHPQAGLGSRVELWGPN 326 (357)
T ss_dssp EEEEBCSCCCS--SCEEEECTTCTTCCTTCEEEEESSS
T ss_pred EEeEEeeEEec--ceEEEECCCCCCCCCCCEEEEECCC
Confidence 35789999996 99888886 8999999999998754
No 97
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=67.46 E-value=10 Score=37.36 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=36.4
Q ss_pred CHHHHHHHHhhCCCe---EEEE-EEecCCCC--CChHHHHHHHHHHHHHHHHHhhcCCC
Q psy9378 327 EAPRLLRLAKSLDLD---VVGV-SFHVGSGC--GDPPVFGRAIYSARQIFDLGNSLGFS 379 (522)
Q Consensus 327 e~~~ll~~~k~~~L~---l~Gl-hfH~GS~~--~~~~~~~~ai~~~~~l~~~~~~~G~~ 379 (522)
++.++.+.+++.||. +.++ |++.+... .+.+...++++.+.+.++.++++|.+
T Consensus 66 ~~~~l~~~l~~~gL~~~~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~ 124 (335)
T 2qw5_A 66 NYTNLRHYLDSEGLENVKISTNVGATRTFDPSSNYPEQRQEALEYLKSRVDITAALGGE 124 (335)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEECCCCSSSCTTCSSHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCCcceeEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 566666677888999 8874 43322221 24666777788888888989999854
No 98
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=67.10 E-value=63 Score=32.22 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=69.7
Q ss_pred eEEEEcCCHHHHHHHHHcCCCEEEEcC--HHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCcccc-CcCCCHHHHHHHH
Q psy9378 259 GFDCASKPISHIRYAAEYGIDTMTFDN--EIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGC-DPISEAPRLLRLA 335 (522)
Q Consensus 259 GfDvaSK~~~eL~~A~~~Gv~~i~vDS--~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi-~~e~e~~~ll~~~ 335 (522)
|.|++| +....++|...++-+- .+.++.+++..-+ -|-|||-.+. . -|. +.+ .+.++++.+
T Consensus 6 G~d~s~-----~~~~e~~g~~~~~~~G~~~d~~~ilk~~G~N-~VRi~~w~~P--------~-~g~~~~~-~~~~~~~~A 69 (332)
T 1hjs_A 6 GVDWSS-----VVVEERAGVSYKNTNGNAQPLENILAANGVN-TVRQRVWVNP--------A-DGNYNLD-YNIAIAKRA 69 (332)
T ss_dssp EEECTT-----HHHHHHTTCCCBCTTSCBCCHHHHHHHTTCC-EEEEEECSSC--------T-TCTTSHH-HHHHHHHHH
T ss_pred eeeHHH-----HHHHHHcCCEEECCCCCcccHHHHHHHCCCC-EEEEeeeeCC--------C-CCcCCHH-HHHHHHHHH
Confidence 666666 4455577776322100 2445555555422 2333432111 0 122 233 566788888
Q ss_pred hhCCCeEEEEEEec-------CCCCC------ChHHHHHH-HHHHHHHHHHHhhcCCCccEEEEcCCCCC------CCCC
Q psy9378 336 KSLDLDVVGVSFHV-------GSGCG------DPPVFGRA-IYSARQIFDLGNSLGFSMRVLDLGGGYPG------YTGY 395 (522)
Q Consensus 336 k~~~L~l~GlhfH~-------GS~~~------~~~~~~~a-i~~~~~l~~~~~~~G~~l~~LdIGGGf~~------~~~~ 395 (522)
++.||++. +-||. |+|.. +.+.+.+. .+.++++++.+++.|..+.++-+|=-+-. ....
T Consensus 70 ~~~GlkV~-ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~ 148 (332)
T 1hjs_A 70 KAAGLGVY-IDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTE 148 (332)
T ss_dssp HHTTCEEE-EEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETT
T ss_pred HHCCCEEE-EEeccCCCcCCccccCCccccccchHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCcc
Confidence 99999854 44664 33321 22333333 44455666777778888888888753311 1113
Q ss_pred CHHHHHHHHHHHHH
Q psy9378 396 SMNRIAEIINVALD 409 (522)
Q Consensus 396 ~~~~~a~~I~~~l~ 409 (522)
+++.+++.++++.+
T Consensus 149 ~~~~~~~l~~~~~~ 162 (332)
T 1hjs_A 149 NWANIARLLHSAAW 162 (332)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56666665555443
No 99
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=65.71 E-value=6.5 Score=38.53 Aligned_cols=51 Identities=4% Similarity=-0.044 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCeEEEEEEe-cC----C-CCCChHHHHHHHHHHHHHHHHHhhcCCC
Q psy9378 329 PRLLRLAKSLDLDVVGVSFH-VG----S-GCGDPPVFGRAIYSARQIFDLGNSLGFS 379 (522)
Q Consensus 329 ~~ll~~~k~~~L~l~GlhfH-~G----S-~~~~~~~~~~ai~~~~~l~~~~~~~G~~ 379 (522)
.++.+.+++.||.+.+++.. .+ . ...+++...++++.+++.++.++++|.+
T Consensus 73 ~~~~~~l~~~Gl~i~~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lGa~ 129 (316)
T 3qxb_A 73 IAYAKAFRKAGLTIESTFGGLASYTYNHFLAPTLELQSLGYQHLKRAIDMTAAMEVP 129 (316)
T ss_dssp HHHHHHHHHTTCEEEEEECCHHHHTSCBTTCSSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCeEEEeeccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444445566666665432 00 0 1124445555566666666666666644
No 100
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=63.23 E-value=6.4 Score=43.51 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCcceEEEeccCCCcc----cc-----cccccCCCCCCCC--cEEEEcCCCcccccCCCCCCCCCCCeEEEEE
Q psy9378 4 RETLVPSSVWGPTCDGL----DK-----VNDDILLPEMPVG--SWLIYRDMGAYTLPVASTFNGFPIPKVHAVI 66 (522)
Q Consensus 4 ~~~~~~~~i~GptCds~----D~-----l~~~~~LP~l~~G--D~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~ 66 (522)
+.+..+.+|++=||||. +. +....+||+++.| -+|-|-.+|||=-.++...|-|+.|.++.+.
T Consensus 498 e~p~~~~~l~diTCDsdG~i~~f~~~~~~~~~l~lh~~~~~e~y~lg~fl~GAYQe~lg~~HnLfg~~~~v~v~ 571 (648)
T 3n2o_A 498 NAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVVN 571 (648)
T ss_dssp GTTSEEEEEEESSSCTTCBCCCEEETTEEESSEEECCCCTTSCCEEEEESCCSSHHHHCCCGGGCCCCEEEEEE
T ss_pred CCcceeeEEeccccCCCCchhhccCCCCCccceecCcCCCCCccEEEEEecchhhHHhccccccCCCCCEEEEE
Confidence 45678899999999997 22 2234778888765 6889999999999999999999999887664
No 101
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=59.44 E-value=29 Score=32.66 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=54.8
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC--CC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG--CG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEI 403 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~--~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~ 403 (522)
++.++.+.+++.|+.... +|.... .. +++.+.+.++.+++.++.++++|.+ .+.+-.|..+ -+.+.+.
T Consensus 50 ~~~~~~~~~~~~gl~~~~--~h~~~~~~l~s~~~~r~~~~~~~~~~i~~a~~lGa~--~vv~h~g~~~-----~~~~~~~ 120 (270)
T 3aam_A 50 EVEAFRALREASGGLPAV--IHASYLVNLGAEGELWEKSVASLADDLEKAALLGVE--YVVVHPGSGR-----PERVKEG 120 (270)
T ss_dssp HHHHHHHHHHHTTCCCEE--EECCTTCCTTCSSTHHHHHHHHHHHHHHHHHHHTCC--EEEECCCBSC-----HHHHHHH
T ss_pred HHHHHHHHHHHcCCceEE--EecCcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCCCC-----HHHHHHH
Confidence 566666777788883333 443211 11 4566777788888888888888854 4555444421 1666677
Q ss_pred HHHHHHhhCCCCCCcEEEecCc
Q psy9378 404 INVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 404 I~~~l~~~~~~~~~~~li~EPG 425 (522)
+++..+..- ...+++|.+|+-
T Consensus 121 l~~l~~~a~-~~~gv~l~lEn~ 141 (270)
T 3aam_A 121 ALKALRLAG-VRSRPVLLVENT 141 (270)
T ss_dssp HHHHHHHHT-CCSSSEEEEECC
T ss_pred HHHHHHhhc-ccCCCEEEEecC
Confidence 776665432 024799999985
No 102
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=53.50 E-value=1.3e+02 Score=28.17 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=24.1
Q ss_pred ccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCCh-----HHHHHHHHHHHHHHHHHhh
Q psy9378 321 GCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDP-----PVFGRAIYSARQIFDLGNS 375 (522)
Q Consensus 321 Gi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~-----~~~~~ai~~~~~l~~~~~~ 375 (522)
|++++ ++.++++ ..+...+| ||..... ..|.+..++++++.+..++
T Consensus 165 GI~~~-N~~~~l~---agga~~v~-----gS~i~~~~~i~~~~~~~i~~~a~~~~~~~~~ 215 (224)
T 1vhc_A 165 GIGLH-NIRDYLA---IPNIVACG-----GSWFVEKKLIQSNNWDEIGRLVREVIDIIKE 215 (224)
T ss_dssp SCCTT-THHHHHT---STTBCCEE-----ECGGGCHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred CcCHH-HHHHHHh---cCCCEEEE-----EchhcCcchhccCCHHHHHHHHHHHHHHHHh
Confidence 88887 7777654 22444444 3433322 2344555556666555444
No 103
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=52.55 E-value=33 Score=33.09 Aligned_cols=94 Identities=14% Similarity=-0.013 Sum_probs=50.5
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecC--CCC--CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC----CC-CC---CCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVG--SGC--GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG----GY-PG---YTG 394 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~G--S~~--~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG----Gf-~~---~~~ 394 (522)
++.++.+.+++.||.+.+ |.-.+ ... .+++...+.++.+.+.++.++++|.+ .|.+-. |. +. ...
T Consensus 67 ~~~~l~~~l~~~gl~i~~-~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~~~~~g~~~~~~~~~~ 143 (309)
T 2hk0_A 67 ELATIRKSAKDNGIILTA-GIGPSKTKNLSSEDAAVRAAGKAFFERTLSNVAKLDIH--TIGGALHSYWPIDYSQPVDKA 143 (309)
T ss_dssp HHHHHHHHHHHTTCEEEE-ECCCCSSSCSSCSCHHHHHHHHHHHHHHHHHHHHTTCC--EEEECTTSCSSCCTTSCCCHH
T ss_pred hHHHHHHHHHHcCCeEEE-ecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEeeccccccccCCCcCChH
Confidence 566666677788998887 43211 111 24555666777788888888888854 333211 21 10 001
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 395 YSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 395 ~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
..++.+.+.+++..+.. . ..+++|.+|+-
T Consensus 144 ~~~~~~~~~l~~l~~~a-~-~~gv~l~lEn~ 172 (309)
T 2hk0_A 144 GDYARGVEGINGIADFA-N-DLGINLCIEVL 172 (309)
T ss_dssp HHHHHHHHHHHHHHHHH-H-HTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHH-H-HcCCEEEEeec
Confidence 12344444444433221 1 24788999975
No 104
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=51.86 E-value=47 Score=32.62 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=38.1
Q ss_pred EeHHHHHHHHHHHHHh-CCCCeEEee--ec---CCC-cHHHHHHHHHcCCeEEEE--cCCHHHHHHHHHcCCCEEEE-cC
Q psy9378 216 LDVGEIVRKHEDWKLK-LPRVDPYYA--VK---CND-SQMVLEVLAALGTGFDCA--SKPISHIRYAAEYGIDTMTF-DN 285 (522)
Q Consensus 216 ~Dl~~I~~ni~~l~~~-lp~~~i~YA--vK---AN~-~~~Vlk~L~~~G~GfDva--SK~~~eL~~A~~~Gv~~i~v-DS 285 (522)
++.+...+-++.+.+. ++-+...+. -| .-. ...+++.+.+. .+..++ ....++++.|++.|+..+.+ ++
T Consensus 27 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~l~~~~~~i~~a~~aG~~~v~i~~~ 105 (302)
T 2ftp_A 27 IEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQR-PGVTYAALAPNLKGFEAALESGVKEVAVFAA 105 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCC-TTSEEEEECCSHHHHHHHHHTTCCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhc-CCCEEEEEeCCHHHHHHHHhCCcCEEEEEEe
Confidence 5777777777777653 233344331 12 111 22444554432 233332 25678899999999886654 54
Q ss_pred H
Q psy9378 286 E 286 (522)
Q Consensus 286 ~ 286 (522)
.
T Consensus 106 ~ 106 (302)
T 2ftp_A 106 A 106 (302)
T ss_dssp S
T ss_pred c
Confidence 4
No 105
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=51.81 E-value=7.9 Score=39.55 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=28.3
Q ss_pred ceEEEeccCCCcccccccccC-CCCCCCCcEEEEcCC
Q psy9378 8 VPSSVWGPTCDGLDKVNDDIL-LPEMPVGSWLIYRDM 43 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~~-LP~l~~GD~l~~~~~ 43 (522)
..+.|.|+.|. |.+..++. +|++++||.+.|...
T Consensus 313 ~~~~ivG~vcm--D~~~vdv~~~~~~~~GD~v~l~g~ 347 (379)
T 2rjg_A 313 REVPIVGRVAM--DMICVDLGPQAQDKAGDPVILWGE 347 (379)
T ss_dssp EEEEBCSCCCS--SCEEEECCTTCCCCTTCEEEEEBT
T ss_pred EEeeEeeeecc--ccEEEECCCCCCCCCCCEEEEECC
Confidence 35789999995 98888875 889999999998753
No 106
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=51.80 E-value=27 Score=33.08 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=31.7
Q ss_pred CHHHHHHHHhhCCCeEEEEEEe-cCC--CCCChHHHHHHHHHHHHHHHHHhhcCCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFH-VGS--GCGDPPVFGRAIYSARQIFDLGNSLGFS 379 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH-~GS--~~~~~~~~~~ai~~~~~l~~~~~~~G~~ 379 (522)
++.++.+.+++.||.+.+++.. .+. ...+++...+.++.+.+.++.++++|.+
T Consensus 48 ~~~~~~~~l~~~gl~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~ 103 (290)
T 2qul_A 48 KKRELKAVADDLGLTVMCCIGLKSEYDFASPDKSVRDAGTEYVKRLLDDCHLLGAP 103 (290)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEECGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHcCCceEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4556666667778888774311 011 1124555566677777777777777754
No 107
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=50.37 E-value=27 Score=32.74 Aligned_cols=21 Identities=5% Similarity=-0.141 Sum_probs=10.0
Q ss_pred HHHHHHHHhhCCCeEEEEEEe
Q psy9378 328 APRLLRLAKSLDLDVVGVSFH 348 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH 348 (522)
+.++.+.+++.||.+.++|..
T Consensus 63 ~~~~~~~l~~~gl~i~~~~~~ 83 (257)
T 3lmz_A 63 IRAFHDKCAAHKVTGYAVGPI 83 (257)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEecc
Confidence 344444444455555554444
No 108
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=49.12 E-value=1.5e+02 Score=28.35 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=12.5
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGS 351 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS 351 (522)
++.+.++.+++.|++ .|+..+.++
T Consensus 122 ~~~~~i~~ir~~G~k-~Gvalnp~T 145 (246)
T 3inp_A 122 HIDRSLQLIKSFGIQ-AGLALNPAT 145 (246)
T ss_dssp CHHHHHHHHHTTTSE-EEEEECTTC
T ss_pred hHHHHHHHHHHcCCe-EEEEecCCC
Confidence 455555555555553 355555444
No 109
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=48.45 E-value=20 Score=35.41 Aligned_cols=60 Identities=37% Similarity=0.479 Sum_probs=39.4
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC----CCChHHHHHHHHHHHHHHHHHhhcCCC--ccEEEEcCCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG----CGDPPVFGRAIYSARQIFDLGNSLGFS--MRVLDLGGGY 389 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~----~~~~~~~~~ai~~~~~l~~~~~~~G~~--l~~LdIGGGf 389 (522)
++.++.+.+++.++. +.+|.+-. ..+++.+..+++.+.+.++.+.++|.+ .-.+..||.+
T Consensus 104 ~~~~~~~~~~~~gi~---i~~H~py~iNL~S~~~e~re~Si~~l~~~l~~a~~lG~~~a~~v~HpG~~~ 169 (301)
T 2j6v_A 104 ELARLGALARAFGQR---LSMHPGQYVNPGSPDPEVVERSLAELRYSARLLSLLGAEDGVLVLHLGGAY 169 (301)
T ss_dssp HHHHHHHHHHHTTCE---EEECCCTTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCT
T ss_pred HHHHHHHHHHHcCCe---EEEeCchhhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEECCCcCC
Confidence 455666666778886 45676542 135677777888888888888899966 3445555433
No 110
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=48.27 E-value=1.2e+02 Score=28.57 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHHHHHhhCCCeEEEEEEecCCC-----CCC-hHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHH
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVGSG-----CGD-PPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIA 401 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~GS~-----~~~-~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a 401 (522)
+.+.++.++..|.+.+.+.+|.|.. ..+ .+.+...++...++.+.+++.|+.+-+=+.+. ++.....+.+++.
T Consensus 90 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~-~~~~~~~~~~~~~ 168 (294)
T 3vni_A 90 YTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNR-FENYLINTAQEGV 168 (294)
T ss_dssp HHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCT-TTCSSCCSHHHHH
T ss_pred HHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCc-ccCcccCCHHHHH
Confidence 4456666777888877766676542 112 34566667777778888888898766556543 2222223455544
Q ss_pred HHHHHHHHhhCCCCCCcEEEecCcceeec
Q psy9378 402 EIINVALDEYFPVEEGVSIIAEPGRYYVA 430 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~EPGR~lva 430 (522)
+.+. +.- .+.+.+.+-+|-....
T Consensus 169 ~l~~----~v~--~~~vg~~~D~~h~~~~ 191 (294)
T 3vni_A 169 DFVK----QVD--HNNVKVMLDTFHMNIE 191 (294)
T ss_dssp HHHH----HHC--CTTEEEEEEHHHHHHH
T ss_pred HHHH----HcC--CCCEEEEEEhhhhHHc
Confidence 4332 221 2457777777766553
No 111
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=44.18 E-value=93 Score=29.90 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEE
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVS 346 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Glh 346 (522)
...++.|++.|+..+.+ +...++... .++..+.++++...+.. |-.+.......++.+.+.|.+.+.++
T Consensus 44 ~~~~~~a~~~~~~av~v-~~~~v~~~~--~~~~~liv~~~~~~~~~--------g~~~~~~~~~~ve~Ai~~Ga~~v~~~ 112 (263)
T 1w8s_A 44 EYILRLARDAGFDGVVF-QRGIAEKYY--DGSVPLILKLNGKTTLY--------NGEPVSVANCSVEEAVSLGASAVGYT 112 (263)
T ss_dssp HHHHHHHHHHTCSEEEE-CHHHHHHHC--CSSSCEEEECEECCTTC--------CSSCCCEESSCHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHhhCCCEEEE-CHHHHHHhh--cCCCcEEEEEeCCCCcC--------CCCccchHHHHHHHHHHCCCCEEEEE
Confidence 35667888999985544 466677666 55577889998754210 11121011112333445788888888
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEE
Q psy9378 347 FHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLD 384 (522)
Q Consensus 347 fH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~Ld 384 (522)
..+|+. + +.+.++.+.++.+.+++.|.++ +++
T Consensus 113 ~nig~~--~---~~~~~~~~~~v~~~~~~~~~~v-Ii~ 144 (263)
T 1w8s_A 113 IYPGSG--F---EWKMFEELARIKRDAVKFDLPL-VVE 144 (263)
T ss_dssp ECTTST--T---HHHHHHHHHHHHHHHHHHTCCE-EEE
T ss_pred EecCCc--C---HHHHHHHHHHHHHHHHHcCCeE-EEE
Confidence 888964 2 2445556666666677777664 444
No 112
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=43.50 E-value=73 Score=33.17 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC---CCCC----HHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 354 GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY---TGYS----MNRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 354 ~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~---~~~~----~~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
.+++.+.++++.+++.++.+.++|. +.+.+-+|..+. ...+ ++.+++.++.+.+..-..+-+++|.+||
T Consensus 157 pd~evR~~ai~~lk~aId~A~~LGa--~~vv~~~G~~G~~~~~~~~~~~~~~~~~e~L~~~~~~A~~~Gv~v~l~IEp 232 (438)
T 1a0c_A 157 CNADVFAYSAAQVKKALEITKELGG--ENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEP 232 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTC--SEEEECCTTSEESCGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEccCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEee
Confidence 3566667777777777777777774 466666664321 1122 3444444444432211101135888886
No 113
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=41.74 E-value=2.4e+02 Score=29.28 Aligned_cols=99 Identities=19% Similarity=0.152 Sum_probs=58.9
Q ss_pred CcCCCHHHHHHHHhhCCCeEEEEEE----ec----C-C-CCCChHHHHHHHHHHHHHHHHHhh----cCCCccEEEE--c
Q psy9378 323 DPISEAPRLLRLAKSLDLDVVGVSF----HV----G-S-GCGDPPVFGRAIYSARQIFDLGNS----LGFSMRVLDL--G 386 (522)
Q Consensus 323 ~~e~e~~~ll~~~k~~~L~l~Glhf----H~----G-S-~~~~~~~~~~ai~~~~~l~~~~~~----~G~~l~~LdI--G 386 (522)
.++ ...++.+.+++.||.+. +-. |. | + ...|++.+..+++.+++..+++++ +|-+ ..++| +
T Consensus 116 ~p~-~f~~~~~~a~e~GL~l~-~n~n~Fshp~yk~G~alTnPD~~VR~~AI~h~k~~idia~~~G~~LGs~-~~~~lW~~ 192 (424)
T 3p14_A 116 EPR-HFEKWVRWAKRHGLGLD-FNPTLFSHEKAKDGLTLAHPDQAIRQFWIDHCIASRKIGEYFGKELETP-CLTNIWIP 192 (424)
T ss_dssp CGG-GGHHHHHHHHHHTCEEE-EECCCSSSGGGTTSCSTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHSSC-EEEEECCC
T ss_pred Chh-hHHHHHHHHHHcCCcee-eccCCCCChhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-eeEEEeCC
Confidence 344 67788888888888877 442 31 3 2 234677888888888888887777 5543 14444 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhCCCC---CCcEEEecCc
Q psy9378 387 GGYPGYTGYSMNRIAEIINVALDEYFPVE---EGVSIIAEPG 425 (522)
Q Consensus 387 GGf~~~~~~~~~~~a~~I~~~l~~~~~~~---~~~~li~EPG 425 (522)
-|+- +|+.|.....+.+.++|++.+... .+.++.+||=
T Consensus 193 DG~k-dyp~D~~~~~~rl~esL~eI~~~~~d~~~~r~aIE~K 233 (424)
T 3p14_A 193 DGYK-DTPSDRLTPRKRLKESLDQIFAAEINEAYNLDAVESK 233 (424)
T ss_dssp CEES-SCCSCSHHHHHHHHHHHHHHTCSCCCTTTEEEEEECC
T ss_pred CCCc-CCCCCHHHHHHHHHHHHHHHHhhccCCcCceEEEecC
Confidence 3442 244455555555555565554321 2357877653
No 114
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=41.72 E-value=51 Score=32.25 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHc-CCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCc---c-cCCCCCccccCcCCCHHHHHHHHhhCC
Q psy9378 265 KPISHIRYAAEY-GIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEV---A-QCQLGMKFGCDPISEAPRLLRLAKSLD 339 (522)
Q Consensus 265 K~~~eL~~A~~~-Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~---~-~~~~~sKFGi~~e~e~~~ll~~~k~~~ 339 (522)
.++++.+++.+. |+..+..| ...++.+.+..+..+|.|-++.+.-. + ........|++.. |+.++++.+.+.+
T Consensus 161 ~~~~e~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~vylSiDiDvlDpa~aPgtgtp~pgGlt~~-e~~~~l~~l~~~~ 238 (287)
T 3lhl_A 161 GTKEEFKFATEEKHTYMEIGG-IDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYR-EFQEIFKIIKNSN 238 (287)
T ss_dssp CCHHHHHHHHTSCSSEEEETC-CTTHHHHHHHTTTCEEEEEEEGGGBCTTTCCSBSSCCSSCBCHH-HHTHHHHHHHTSC
T ss_pred CCHHHHHHHHhcCCCEEEecH-HhHHHHHHHHcCCCcEEEEEecCcCCHhhCCCCCCCCCCCCCHH-HHHHHHHHHHhCC
Confidence 445666666665 55433333 23344444433445888888876311 1 1233577899998 9999998886556
Q ss_pred CeEEEEEEec
Q psy9378 340 LDVVGVSFHV 349 (522)
Q Consensus 340 L~l~GlhfH~ 349 (522)
.+++|+..=-
T Consensus 239 ~~vvg~DivE 248 (287)
T 3lhl_A 239 INIVGCDIVE 248 (287)
T ss_dssp CEEEEEEEEC
T ss_pred CCEEEEEEEE
Confidence 7888887653
No 115
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=40.54 E-value=37 Score=31.86 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=60.5
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC---CC-CCCCCCCHHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG---GY-PGYTGYSMNRIAE 402 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG---Gf-~~~~~~~~~~~a~ 402 (522)
.+.+.++.++..|...+.+++|.++.....+.+...++...++.+.+++.|+.+-+=+.+. ++ +.....+.+++.+
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~~~~~~ 164 (281)
T 3u0h_A 85 LLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQVAVELLPLGMRVGLEYVGPHHLRHRRYPFVQSLADLKT 164 (281)
T ss_dssp THHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCGGGCCSSEECCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCEEEEEeccccccccccccccCCHHHHHH
Confidence 4566777788899888777777665433345666777777888888889998876666652 11 1111234555544
Q ss_pred HHHHHHHhhCCCCCCcEEEecCcceeec
Q psy9378 403 IINVALDEYFPVEEGVSIIAEPGRYYVA 430 (522)
Q Consensus 403 ~I~~~l~~~~~~~~~~~li~EPGR~lva 430 (522)
.+ ++. . .+.+.+.+-+|-...+
T Consensus 165 l~----~~v-~-~~~vg~~~D~~h~~~~ 186 (281)
T 3u0h_A 165 FW----EAI-G-APNVGALVDSYHWYTA 186 (281)
T ss_dssp HH----HHH-C-CTTEEEEEEHHHHHHT
T ss_pred HH----HHc-C-CCCeeEEeehhHHHHc
Confidence 33 222 1 2467777777765543
No 116
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=39.96 E-value=70 Score=32.05 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCCeEEee-ecCCCcHHHHHHHHHcCC-eEEEEc------CCHHHHHHHHHcCCCE-EEE-----cCHHHH
Q psy9378 224 KHEDWKLKLPRVDPYYA-VKCNDSQMVLEVLAALGT-GFDCAS------KPISHIRYAAEYGIDT-MTF-----DNEIEL 289 (522)
Q Consensus 224 ni~~l~~~lp~~~i~YA-vKAN~~~~Vlk~L~~~G~-GfDvaS------K~~~eL~~A~~~Gv~~-i~v-----DS~~EL 289 (522)
.++++++..+++++..- ........-++...+.|+ ++-+.. ...+.+++|.++|+.. +.+ -+.+.+
T Consensus 72 ~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~ 151 (345)
T 1nvm_A 72 YIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKL 151 (345)
T ss_dssp HHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHH
T ss_pred HHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHH
Confidence 34455555555543211 111224556666667774 333332 3456677788888752 233 235666
Q ss_pred HHHhhhCCC--CeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-C--CCeEEEEEEecCCCCCChHHHHHHHH
Q psy9378 290 QKVKQFHPT--AQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-L--DLDVVGVSFHVGSGCGDPPVFGRAIY 364 (522)
Q Consensus 290 ~~i~~~~~~--~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~--~L~l~GlhfH~GS~~~~~~~~~~ai~ 364 (522)
.++.+...+ +. +|+..+..+ ...|+ ++.++++.+++ . ++ ..|+|+|--.+. ++.
T Consensus 152 ~~ia~~~~~~Ga~---~i~l~DT~G--------~~~P~-~v~~lv~~l~~~~~~~~-pi~~H~Hn~~G~--------avA 210 (345)
T 1nvm_A 152 AEQGKLMESYGAT---CIYMADSGG--------AMSMN-DIRDRMRAFKAVLKPET-QVGMHAHHNLSL--------GVA 210 (345)
T ss_dssp HHHHHHHHHHTCS---EEEEECTTC--------CCCHH-HHHHHHHHHHHHSCTTS-EEEEECBCTTSC--------HHH
T ss_pred HHHHHHHHHCCCC---EEEECCCcC--------ccCHH-HHHHHHHHHHHhcCCCc-eEEEEECCCccH--------HHH
Confidence 665554321 22 233222110 12366 88899988865 3 44 579999965543 222
Q ss_pred HHHHHHHHHhhcCCCccEEEEc-CCCCCC-CCCCHHHHHHHHH
Q psy9378 365 SARQIFDLGNSLGFSMRVLDLG-GGYPGY-TGYSMNRIAEIIN 405 (522)
Q Consensus 365 ~~~~l~~~~~~~G~~l~~LdIG-GGf~~~-~~~~~~~~a~~I~ 405 (522)
.+... -+.|. +++|-- +|++.. -+.+++++...+.
T Consensus 211 n~laA----~~aGa--~~vd~tv~GlG~~aGN~~le~lv~~L~ 247 (345)
T 1nvm_A 211 NSIVA----VEEGC--DRVDASLAGMGAGAGNAPLEVFIAVAE 247 (345)
T ss_dssp HHHHH----HHTTC--CEEEEBGGGCSSTTCBCBHHHHHHHHH
T ss_pred HHHHH----HHcCC--CEEEecchhccCCccCcCHHHHHHHHH
Confidence 22221 23453 456642 333332 2355777766655
No 117
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=39.21 E-value=1.5e+02 Score=29.50 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCC
Q psy9378 290 QKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGS 351 (522)
Q Consensus 290 ~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS 351 (522)
+.+.+.. +.+|++|+++.... .-|.+.+ +..++++.+.+.|+. .||.|.|.
T Consensus 202 ~avr~~v-~~pv~vRls~~~~~-------~~g~~~~-~~~~la~~L~~~Gvd--~i~vs~g~ 252 (340)
T 3gr7_A 202 DAVREVW-DGPLFVRISASDYH-------PDGLTAK-DYVPYAKRMKEQGVD--LVDVSSGA 252 (340)
T ss_dssp HHHHHHC-CSCEEEEEESCCCS-------TTSCCGG-GHHHHHHHHHHTTCC--EEEEECCC
T ss_pred HHHHHhc-CCceEEEecccccc-------CCCCCHH-HHHHHHHHHHHcCCC--EEEEecCC
Confidence 4444444 57899999986421 1267777 889999999888866 46777554
No 118
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=37.45 E-value=60 Score=30.26 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=13.9
Q ss_pred CHHHHHHHHhhCCCeEEEEEEec
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHV 349 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~ 349 (522)
++.++.+.+++.||++.++|...
T Consensus 64 ~~~~~~~~l~~~gl~i~~~~~~~ 86 (262)
T 3p6l_A 64 TQKEIKELAASKGIKIVGTGVYV 86 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEeccC
Confidence 45555555566677776666654
No 119
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=36.36 E-value=73 Score=29.49 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-----CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 355 DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-----GYSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 355 ~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-----~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
+++.+.+.++.+.+.++.++++|.+ .|.+..|..... ...++.+.+.+++..+.. . ..+++|.+|+-
T Consensus 67 ~~~~r~~~~~~~~~~i~~A~~lGa~--~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~-~~gv~l~lEn~ 138 (254)
T 3ayv_A 67 DPEVRGLTLRRLLFGLDRAAELGAD--RAVFHSGIPHGRTPEEALERALPLAEALGLVVRRA-R-TLGVRLLLENS 138 (254)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCS--EEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHH-H-HHTCEEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCcccccccHHHHHHHHHHHHHHHHHHH-h-hcCCEEEEcCC
Confidence 5566777788888888888888854 444544432211 122555555555544322 1 14789999975
No 120
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=36.30 E-value=1.9e+02 Score=26.54 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=54.7
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCC--CC-hHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCC--CCCCCCCCHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGC--GD-PPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG--YPGYTGYSMNRIA 401 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~--~~-~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGG--f~~~~~~~~~~~a 401 (522)
.+.+.++.++..|...+.+ |.|... .+ .+.+...++...++.+.+++.|+.+-+=+.++. + ..+.+++.
T Consensus 85 ~~~~~i~~a~~lG~~~v~~--~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~----~~~~~~~~ 158 (278)
T 1i60_A 85 EFKGMMETCKTLGVKYVVA--VPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCT----VNTFEQAY 158 (278)
T ss_dssp HHHHHHHHHHHHTCCEEEE--ECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBS----SCSHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEE--ecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCccch----hcCHHHHH
Confidence 3456666677778877666 454432 23 455666677777788888888987766666554 3 12355544
Q ss_pred HHHHHHHHhhCCCCCCcEEEecCcceeec
Q psy9378 402 EIINVALDEYFPVEEGVSIIAEPGRYYVA 430 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~EPGR~lva 430 (522)
+.+ ++.- .+.+.+.+-+|-....
T Consensus 159 ~l~----~~~~--~~~~g~~~D~~h~~~~ 181 (278)
T 1i60_A 159 EIV----NTVN--RDNVGLVLDSFHFHAM 181 (278)
T ss_dssp HHH----HHHC--CTTEEEEEEHHHHHHT
T ss_pred HHH----HHhC--CCCeeEEEEeEEEeec
Confidence 333 2221 2457777777765543
No 121
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=35.92 E-value=2.7e+02 Score=25.75 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=8.7
Q ss_pred ccCcCCCHHHHHH
Q psy9378 321 GCDPISEAPRLLR 333 (522)
Q Consensus 321 Gi~~e~e~~~ll~ 333 (522)
|++++ ++.++++
T Consensus 164 GI~~~-n~~~~l~ 175 (214)
T 1wbh_A 164 GISPA-NYRDYLA 175 (214)
T ss_dssp SCCTT-THHHHHT
T ss_pred CCCHH-HHHHHHh
Confidence 88887 7777654
No 122
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=33.81 E-value=75 Score=30.90 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhCCCCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE------LQKVKQFHPTAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLRL 334 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~~~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~~ 334 (522)
..+++.+.+.+.|+..+..+.+.+ ++++.+..+..++.|-++.+.-. +. .......|++.. |+.++++.
T Consensus 170 ~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~l~~~~vylSiDiDvlDp~~aPgtgtp~pgGlt~~-e~~~~l~~ 248 (290)
T 2ef5_A 170 LDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYR-EAHLLMEI 248 (290)
T ss_dssp CCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHTTTSCEEEEEEGGGBCTTTCCCCSSCCSSCBCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHcCCeEEEHHHHHhcCHHHHHHHHHHhcCCCcEEEEEccCCCChhhCCCCCCCCCCCCCHH-HHHHHHHH
Confidence 345666777777776554444433 23333333345789988876321 11 123467899998 99999988
Q ss_pred HhhCCCeEEEEEEe
Q psy9378 335 AKSLDLDVVGVSFH 348 (522)
Q Consensus 335 ~k~~~L~l~GlhfH 348 (522)
+.+. .+++|+..=
T Consensus 249 l~~~-~~vvg~Div 261 (290)
T 2ef5_A 249 LAES-GRVQSLDLV 261 (290)
T ss_dssp HHHH-TCEEEEEEE
T ss_pred HHcC-CCEEEEEEE
Confidence 7542 246676654
No 123
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=33.67 E-value=36 Score=33.67 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=47.7
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhCCCCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHHHH
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIE------LQKVKQFHPTAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLRLA 335 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~~~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~~~ 335 (522)
++++++.+.+.|+..+..+.+.+ ++++.+.....+|.|-++.+.-. +. .......|++.. |+.++++.+
T Consensus 189 ~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~pgGlt~~-e~~~~l~~l 267 (313)
T 1gq6_A 189 KPDSLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSR-EVLALLRCV 267 (313)
T ss_dssp ----CHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGBCTTTCCSBSSCCSSCBCHH-HHHHHGGGG
T ss_pred CHHHHHHHHHcCCEEEEHHHHhhcCHHHHHHHHHHHcCCCeEEEEEeecCcCcccCCCCCCCCCCCCCHH-HHHHHHHHH
Confidence 45677788888886555554432 23333322345799999876321 11 133567899988 888888877
Q ss_pred hhCCCeEEEEEEe
Q psy9378 336 KSLDLDVVGVSFH 348 (522)
Q Consensus 336 k~~~L~l~GlhfH 348 (522)
+. .+++|+..=
T Consensus 268 ~~--~~vvg~Div 278 (313)
T 1gq6_A 268 GD--LKPVGFDVM 278 (313)
T ss_dssp GG--SEEEEEEEE
T ss_pred cc--CCeEEEEEE
Confidence 43 578887765
No 124
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=33.10 E-value=89 Score=30.35 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=58.1
Q ss_pred CCCeEEeeecCCCcHHHHHHHHHcCC---eEEEEc----------CCH--------HHHHHHHHcCCCEEE------E--
Q psy9378 233 PRVDPYYAVKCNDSQMVLEVLAALGT---GFDCAS----------KPI--------SHIRYAAEYGIDTMT------F-- 283 (522)
Q Consensus 233 p~~~i~YAvKAN~~~~Vlk~L~~~G~---GfDvaS----------K~~--------~eL~~A~~~Gv~~i~------v-- 283 (522)
+++++.--+ ++..-++.+.+.|+ .+..+. ++. +-+++|.+.|+. +. +
T Consensus 71 ~~~~v~~l~---~n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~-V~~~l~~~~~~ 146 (295)
T 1ydn_A 71 DGVRYSVLV---PNMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLA-IRGYVSCVVEC 146 (295)
T ss_dssp SSSEEEEEC---SSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCE-EEEEEECSSEE
T ss_pred CCCEEEEEe---CCHHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEEEecC
Confidence 455553222 45666777777775 444322 222 235677788885 43 2
Q ss_pred -----cCHHHHHHHhhhCC--CCeEEEEEeeCCCcccCCCCCccc-cCcCCCHHHHHHHHhhC-C-CeEEEEEEecCCCC
Q psy9378 284 -----DNEIELQKVKQFHP--TAQLVIRIRCDAEVAQCQLGMKFG-CDPISEAPRLLRLAKSL-D-LDVVGVSFHVGSGC 353 (522)
Q Consensus 284 -----DS~~EL~~i~~~~~--~~~V~LRIn~~~~~~~~~~~sKFG-i~~e~e~~~ll~~~k~~-~-L~l~GlhfH~GS~~ 353 (522)
-+.+++.++.+... .+. .|+|. +. .| ..|+ +..++++.+++. . +. .++|+|-+++.
T Consensus 147 e~~~~~~~~~~~~~~~~~~~~G~d-~i~l~-Dt----------~G~~~P~-~~~~lv~~l~~~~~~~~-l~~H~Hn~~Gl 212 (295)
T 1ydn_A 147 PYDGPVTPQAVASVTEQLFSLGCH-EVSLG-DT----------IGRGTPD-TVAAMLDAVLAIAPAHS-LAGHYHDTGGR 212 (295)
T ss_dssp TTTEECCHHHHHHHHHHHHHHTCS-EEEEE-ET----------TSCCCHH-HHHHHHHHHHTTSCGGG-EEEEEBCTTSC
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCC-EEEec-CC----------CCCcCHH-HHHHHHHHHHHhCCCCe-EEEEECCCcch
Confidence 26777777665321 121 23333 11 12 4566 788888888753 3 33 68999987764
No 125
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=32.88 E-value=68 Score=31.90 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=51.7
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhCCC--CeEEEEEeeCCC---ccc-CCCCCccccCcCCCHHHHHH
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIE------LQKVKQFHPT--AQLVIRIRCDAE---VAQ-CQLGMKFGCDPISEAPRLLR 333 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~~~--~~V~LRIn~~~~---~~~-~~~~sKFGi~~e~e~~~ll~ 333 (522)
++++.+.+.+.|+..+..+.+.+ ++++.+.... .++.|-++.+.- .+. .......|++.. |+.++++
T Consensus 197 ~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~pgGlt~~-e~~~il~ 275 (322)
T 3m1r_A 197 SQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEILPVVQDKTDFIFISVDMDVLDQSHAPGCPAIGPGGLYTD-ELLEAVK 275 (322)
T ss_dssp CHHHHHHHHHTTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCTTSSSCCSSCBCHH-HHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEHHHHhhcCHHHHHHHHHHHhhccCCeEEEEEeecccChhhCCCCCCCCCCCCCHH-HHHHHHH
Confidence 67899999999987666555443 2233222222 378999987632 111 123467899998 8999998
Q ss_pred HHhhCCCeEEEEEEe
Q psy9378 334 LAKSLDLDVVGVSFH 348 (522)
Q Consensus 334 ~~k~~~L~l~GlhfH 348 (522)
.+... -+++|+..=
T Consensus 276 ~l~~~-~~vvg~Div 289 (322)
T 3m1r_A 276 YIAQQ-PNVAGIEIV 289 (322)
T ss_dssp HHHTS-TTEEEEEEE
T ss_pred HHhcc-CCEEEEEEE
Confidence 87643 356676654
No 126
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=32.56 E-value=29 Score=34.82 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhCCCCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE------LQKVKQFHPTAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLRL 334 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~~~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~~ 334 (522)
.++++++.+.+.|+..+..+.+.+ ++++.+.....++.|-++.+.-. +. .......|++.. |+.++++.
T Consensus 193 ~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~pgGlt~~-e~~~~l~~ 271 (326)
T 3niq_A 193 YSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSL-QAQQLVRG 271 (326)
T ss_dssp SCTTSTHHHHHHTCEEEEHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEGGGBCTTTCCCCSSCCSSCBCHH-HHHHHHHT
T ss_pred CCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHhCCCeEEEEEeccccCHhhCCCCCCCCCCCCCHH-HHHHHHHH
Confidence 356788888889987666655543 23333332345789988876321 11 223467899987 88888876
Q ss_pred HhhCCCeEEEEEEec
Q psy9378 335 AKSLDLDVVGVSFHV 349 (522)
Q Consensus 335 ~k~~~L~l~GlhfH~ 349 (522)
+. +.+++|+..=-
T Consensus 272 l~--~~~vvg~DivE 284 (326)
T 3niq_A 272 LR--GLDLVGADVVE 284 (326)
T ss_dssp TT--TSCEEEEEEEC
T ss_pred Hc--CCCEEEEEEEE
Confidence 64 45788887653
No 127
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=32.24 E-value=74 Score=29.47 Aligned_cols=141 Identities=9% Similarity=-0.003 Sum_probs=84.7
Q ss_pred ccCCCCceEEeecCCC--ceeeeehhhccCcccccCCCCccCCCCCCCCccccccC----CcceEEecCCCCCCCccccC
Q psy9378 128 LQNPEDQIYVLDRGND--AVHVMKSIILSGVPVYNYPDNIRVLPEFQPTISVWKRI----PKSLMVYPRTDDMTQVPVYN 201 (522)
Q Consensus 128 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~ 201 (522)
|+.+-+-|++|+ |+= --.+++.+--.|-+++=|||.+.++-.-+. +-.+... |+=.. +...+..
T Consensus 26 l~s~~~~ifll~-g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d~~-ai~fL~~~~~pdGIIs--------Tk~~~i~ 95 (192)
T 3kts_A 26 LELDLTYMVMLE-THVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDY-AIDFLCTEICPDGIIS--------TRGNAIM 95 (192)
T ss_dssp TTSSCCEEEECS-EETTTHHHHHHHHHHTTCEEEEEGGGEETCCCSHH-HHHHHHHTTCCSEEEE--------SCHHHHH
T ss_pred HcCCCCEEEEec-CcHHHHHHHHHHHHHcCCeEEEecCchhccCCcHH-HHHHHHhCCCCCEEEe--------CcHHHHH
Confidence 445555566654 211 112334444578888889999999854322 2222221 11111 1111122
Q ss_pred CccccCCCC----CeEEEEeHHHHHHHHHHHHHhCCC-CeEEeeecCCCcHHHHHHHHHc-CCeEEEEc--CCHHHHHHH
Q psy9378 202 YPDNVGMKE----DAFYVLDVGEIVRKHEDWKLKLPR-VDPYYAVKCNDSQMVLEVLAAL-GTGFDCAS--KPISHIRYA 273 (522)
Q Consensus 202 l~~~~~~~~----tP~yV~Dl~~I~~ni~~l~~~lp~-~~i~YAvKAN~~~~Vlk~L~~~-G~GfDvaS--K~~~eL~~A 273 (522)
.+ ++.+ .=+|++|-..++.-++.+++.-|+ ++++.+ ..|.+++.+.+. +.-+=+.- .+.++++.|
T Consensus 96 ~A---k~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiLPG----i~p~iI~~i~~~~~~PiIaGGlI~~~edv~~a 168 (192)
T 3kts_A 96 KA---KQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPG----IIPEQVQKMTQKLHIPVIAGGLIETSEQVNQV 168 (192)
T ss_dssp HH---HHTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEECT----TCHHHHHHHHHHHCCCEEEESSCCSHHHHHHH
T ss_pred HH---HHCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEECCc----hhHHHHHHHHHhcCCCEEEECCcCCHHHHHHH
Confidence 22 3333 126899999999999999998886 567755 357888888765 44444444 889999999
Q ss_pred HHcCCCEEEEcC
Q psy9378 274 AEYGIDTMTFDN 285 (522)
Q Consensus 274 ~~~Gv~~i~vDS 285 (522)
+++|...++..+
T Consensus 169 l~aGA~aVsTs~ 180 (192)
T 3kts_A 169 IASGAIAVTTSN 180 (192)
T ss_dssp HTTTEEEEEECC
T ss_pred HHcCCeEEEeCC
Confidence 999987555544
No 128
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=31.71 E-value=1.8e+02 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=12.4
Q ss_pred CccccCcCCCH----HHHHHHHhhCCCeEEE
Q psy9378 318 MKFGCDPISEA----PRLLRLAKSLDLDVVG 344 (522)
Q Consensus 318 sKFGi~~e~e~----~~ll~~~k~~~L~l~G 344 (522)
.+++.+.+ +. .+.++.+++.|+++.+
T Consensus 140 ~~l~~s~~-e~l~~~~~~v~~ak~~G~~V~~ 169 (423)
T 3ivs_A 140 YSHGKDMT-YIIDSATEVINFVKSKGIEVRF 169 (423)
T ss_dssp -------C-HHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHcCCCHH-HHHHHHHHHHHHHHHCCCEEEE
Confidence 45777765 44 4466677888887653
No 129
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=31.47 E-value=1.1e+02 Score=29.62 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCCEEEE------cCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCe
Q psy9378 268 SHIRYAAEYGIDTMTF------DNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLD 341 (522)
Q Consensus 268 ~eL~~A~~~Gv~~i~v------DS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~ 341 (522)
.-+....+.|+..+-+ .+++|+..+++.+.+..+ =+-|- =||+.+ ...++++.+.+.|++
T Consensus 172 tAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~--~lEPT-----------GGIdl~-Nf~~I~~i~l~aGv~ 237 (275)
T 3m6y_A 172 TAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGF--ALEPT-----------GGIDKE-NFETIVRIALEANVE 237 (275)
T ss_dssp HHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTC--EEEEB-----------SSCCTT-THHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc--eECCC-----------CCccHh-HHHHHHHHHHHcCCC
Confidence 4566777888876544 789999999887644334 33443 289998 999999999999988
Q ss_pred EEEEEEec-----CCCCCChHHHHHHHHHHHHHH
Q psy9378 342 VVGVSFHV-----GSGCGDPPVFGRAIYSARQIF 370 (522)
Q Consensus 342 l~GlhfH~-----GS~~~~~~~~~~ai~~~~~l~ 370 (522)
.+--|.+. .++.+.++...+.++..++++
T Consensus 238 ~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~l~ 271 (275)
T 3m6y_A 238 QVIPHVYSSIIDKETGNTKVEAVRELLAVVKKLV 271 (275)
T ss_dssp CBCCEECGGGBCTTTCCBCHHHHHHHHHHHHHHH
T ss_pred eecccccceeccCCCCCCCHHHHHHHHHHHHHHH
Confidence 77777663 234456666665555554443
No 130
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=30.14 E-value=50 Score=32.84 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhCCCCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE------LQKVKQFHPTAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLRL 334 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~~~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~~ 334 (522)
.++++.+++.+.|+..+..+.+.+ ++++.+.....+|.|-++.+.-. +. .......|+++. |+.++++.
T Consensus 196 ~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~pgGlt~~-e~~~~l~~ 274 (319)
T 3nio_A 196 YTAEDFNWSRXQGFRVVQAEECWHXSLEPLMAEVREXVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTI-QAMEIIRG 274 (319)
T ss_dssp SSTHHHHHHHHHTCEEEEGGGTTTCCSHHHHHHHHHHHCSSEEEEEEEGGGBCTTTCCCBSSCCSSCBCHH-HHHHHHHT
T ss_pred CCHHHHHHHHhcCcEEEEHHHhhhcCHHHHHHHHHHhcCCCcEEEEEecCccChhhCCCCCCCCCCCCCHH-HHHHHHHH
Confidence 456888999999987666554321 34444433345799998876321 11 123467899987 88888876
Q ss_pred HhhCCCeEEEEEEe
Q psy9378 335 AKSLDLDVVGVSFH 348 (522)
Q Consensus 335 ~k~~~L~l~GlhfH 348 (522)
++ +.+++|+..=
T Consensus 275 l~--~~~vvg~Div 286 (319)
T 3nio_A 275 CQ--GLDLIGCDLV 286 (319)
T ss_dssp TT--TSEEEEEEEE
T ss_pred hc--cCCeeEEEEE
Confidence 53 5688888764
No 131
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=29.97 E-value=1.1e+02 Score=30.07 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=52.5
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHH-HHHHhhhC-CCCeEEEEEeeCCC---ccc-CCCCCccccCcCCCHHHHHHHHhhCC
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIE-LQKVKQFH-PTAQLVIRIRCDAE---VAQ-CQLGMKFGCDPISEAPRLLRLAKSLD 339 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~E-L~~i~~~~-~~~~V~LRIn~~~~---~~~-~~~~sKFGi~~e~e~~~ll~~~k~~~ 339 (522)
++++.+.+.+.|+..+..+.+.+ ++.+.+.. ...++.|-++.+.- .+. .......|++.. |+.++++.+.+ +
T Consensus 187 ~~~e~~~~~~~g~~~~~~~~i~~~~~~v~~~~~~~~~vylSiDiDvlDpa~aPgtgtp~pgGlt~~-e~~~~l~~l~~-~ 264 (305)
T 1woh_A 187 DPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYA-QGMKILAAAAA-N 264 (305)
T ss_dssp CHHHHHHHHHTTCEEEEHHHHHHCHHHHHTTSCCSSEEEEEEEGGGBCTTTCCCBSSCCSSCBCHH-HHHHHHHHHHH-H
T ss_pred CHHHHHHHHHcCCeEEEHHHHHHHHHHHHHHhhCCCcEEEEEeecCCChhhCCCCCCCCCCCCCHH-HHHHHHHHHhc-c
Confidence 67899999999997565554433 33333332 23478998887632 111 134577899998 99999988753 2
Q ss_pred CeEEEEEEe
Q psy9378 340 LDVVGVSFH 348 (522)
Q Consensus 340 L~l~GlhfH 348 (522)
.+++|+..=
T Consensus 265 ~~vvg~Div 273 (305)
T 1woh_A 265 NTVVGLDLV 273 (305)
T ss_dssp SEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 367777655
No 132
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=29.47 E-value=61 Score=33.23 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=35.0
Q ss_pred CHHHHHHHHhhCCCeEEEEEE---ecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSF---HVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSM 380 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~Glhf---H~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l 380 (522)
++.++-+.+++.||++.++.+ |-.. ....+.+.+.++..++.++.+.++|.+.
T Consensus 65 ~i~~lk~~l~~~GL~i~~i~s~~~~~~i-~~~~~~r~~~ie~~k~~i~~aa~lGi~~ 120 (386)
T 3bdk_A 65 NILELKKMVEEAGLEITVIESIPVHEDI-KQGKPNRDALIENYKTSIRNVGAAGIPV 120 (386)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCCCCHHH-HTTCTTHHHHHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHcCCEEEEEecccccccc-ccCcHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 566666777888999998863 2100 0112345667788888888888888763
No 133
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=28.79 E-value=2.5e+02 Score=28.08 Aligned_cols=158 Identities=11% Similarity=-0.037 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCC
Q psy9378 224 KHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPT 298 (522)
Q Consensus 224 ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~ 298 (522)
..+++++.+.+-..+.++=...-..+-+++++.|... ++ .....+..++..+...|.+|-..-+..+....+.
T Consensus 10 k~~rL~ri~~~~g~~~ilA~DHR~sl~~m~~~~~~~~--~~~~~l~~~K~lv~~~~~~~asaILlD~~~G~~a~~~~~~~ 87 (332)
T 3iv3_A 10 KYNYLAKVSDSNGVISALAFDQRGALKCLMAQYQMKE--PTVAQMEELKVLVSEELTPYASSILLDPEYGLPAAQARDRE 87 (332)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCSHHHHHHHHTTTTSC--CCHHHHHHHHHHHHHHHGGGSSEEEECTTTCHHHHHTSCTT
T ss_pred HHHHHHHHhCCCCCEEEEEcCChhHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHhcCCcEEEEchhhCHHHhccccCC
Confidence 3445555553222223333334445555566655321 12 1124455666777777889975545555555567
Q ss_pred CeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCC
Q psy9378 299 AQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGF 378 (522)
Q Consensus 299 ~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~ 378 (522)
..++|++.-....++ ..++.+=.. ...-.+.+++.|.+.+.+|++.|+.. +.+.-.+.++...++.+.+++.|+
T Consensus 88 ~GLii~~E~~G~~~~--~~gr~p~~l---~~~sve~a~~~GADAVk~lv~~g~d~-~~e~~~~q~~~l~rv~~ec~~~Gi 161 (332)
T 3iv3_A 88 AGLLLAYEKTGYDAN--TTSRLPDCL---VDWSIKRLKEAGADAVKFLLYYDVDG-DPQVNVQKQAYIERIGSECQAEDI 161 (332)
T ss_dssp CEEEEECBCCCCCTT--SSCCCCCBC---TTCCHHHHHHTTCSEEEEEEEECTTS-CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEeccCCCCcC--CCCCCCccc---cccCHHHHHHcCCCEEEEEEEcCCCc-hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788888742111010 012222101 11235667788999999999999853 344445677888888899999997
Q ss_pred CccE--EEEcCCC
Q psy9378 379 SMRV--LDLGGGY 389 (522)
Q Consensus 379 ~l~~--LdIGGGf 389 (522)
++-. +--+-+.
T Consensus 162 PlllEil~y~~~~ 174 (332)
T 3iv3_A 162 PFFLEILTYDETI 174 (332)
T ss_dssp CEEEEEEECBTTB
T ss_pred ceEEEEeccCCCC
Confidence 7533 5445543
No 134
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=28.22 E-value=92 Score=30.50 Aligned_cols=82 Identities=9% Similarity=-0.027 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhC---CCCeEEEEEeeCCCc---c-cCCCCCccccCcCCCHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE------LQKVKQFH---PTAQLVIRIRCDAEV---A-QCQLGMKFGCDPISEAPRL 331 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~---~~~~V~LRIn~~~~~---~-~~~~~sKFGi~~e~e~~~l 331 (522)
.++++.+.+.+.|+..+..+.+.+ ++++.+.. ...++.|-++.+.-. + ........|++.. |+.++
T Consensus 178 ~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~~~~~~~vylSiDiDvlDp~~aPgtgtp~pgGlt~~-e~~~~ 256 (306)
T 1pq3_A 178 VDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYR-EGMYI 256 (306)
T ss_dssp CCHHHHHHHHHTTCEEECHHHHHHHCHHHHHHHHHHHHHSSSCCCEEEEEEGGGBCTTTCCSBSSCCSSCBCHH-HHHHH
T ss_pred CCHHHHHHHHHcCCeEEEhHHHhhhCHHHHHHHHHHHHhhcCCCeEEEEEecCCcCccccCCCCCCCCCCCCHH-HHHHH
Confidence 346677777777776444333322 22333322 234689988876321 1 1223467899998 99999
Q ss_pred HHHHhhCCCeEEEEEEe
Q psy9378 332 LRLAKSLDLDVVGVSFH 348 (522)
Q Consensus 332 l~~~k~~~L~l~GlhfH 348 (522)
++.+.+. -+++|+..=
T Consensus 257 l~~l~~~-~~vvg~Div 272 (306)
T 1pq3_A 257 AEEIHNT-GLLSALDLV 272 (306)
T ss_dssp HHHHHTT-TCEEEEEEE
T ss_pred HHHHHcC-CCEEEEEEE
Confidence 9888643 257777665
No 135
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=27.64 E-value=3.6e+02 Score=26.08 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=13.3
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCCCCeEEeee
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLPRVDPYYAV 241 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAv 241 (522)
..+++.+.+ .+.++++++..|++...|-+
T Consensus 181 ~~v~i~SF~--~~~l~~~~~~~p~~~~~~l~ 209 (313)
T 3l12_A 181 PRTVMHSFD--WALLGECRRQAPDLPTSYLS 209 (313)
T ss_dssp GGEEEEESC--HHHHHHHHHHCTTSCEEEEE
T ss_pred CCEEEEcCC--HHHHHHHHHHCCCCcEEEEe
Confidence 344444443 23344555555555444433
No 136
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=26.49 E-value=46 Score=34.52 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=33.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEEEe
Q psy9378 344 GVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIA 422 (522)
Q Consensus 344 GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~li~ 422 (522)
++..|.++|. +...+..+.++..+ ....+.+..-.+||||++......+..+..+...+ ++.++++.
T Consensus 200 ~l~v~~stQ~--p~~~r~~vA~~Lgl----p~~~VrV~~~~vGGgFG~K~~~~~~~~aa~~A~~~------grPVk~~~ 266 (425)
T 3hrd_A 200 MLTVVVSTQN--PHYDRGEVAGMLAL----PNSKVRIIQATTGGGFGGKLDLSVQCHCALLTYHT------KKPVKMVR 266 (425)
T ss_dssp CEEEEECCSC--HHHHHHHHHHHTTC----CGGGEEEEECBCCCCTTTTSSCSSHHHHHHHHHHH------CSCEEEEC
T ss_pred eEEEEECCCC--HHHHHHHHHHHhCC----ChhhEEEEeCCCCCCCCCCcccCHHHHHHHHHHHh------CCCEEEEe
Confidence 4778888885 43333333222110 11112344457899998765444444444443333 24566654
No 137
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=26.45 E-value=1.3e+02 Score=29.97 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=35.4
Q ss_pred cHHHHHHHHHcCCeEEEE-cCCHHHHHHHHHcCCCEEEEcCHHHHHHHhh
Q psy9378 246 SQMVLEVLAALGTGFDCA-SKPISHIRYAAEYGIDTMTFDNEIELQKVKQ 294 (522)
Q Consensus 246 ~~~Vlk~L~~~G~GfDva-SK~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~ 294 (522)
-+.+++.+.+.|--+.-+ ..+.++|+.|++.||..||+|+.-.+.....
T Consensus 214 ~~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~ 263 (305)
T 1rvg_A 214 PPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAFTAL 263 (305)
T ss_dssp CHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHH
T ss_pred cHHHHHHHHhhccccccCCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHH
Confidence 467777777777433221 1678999999999998899998776655443
No 138
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=25.84 E-value=4.3e+02 Score=26.00 Aligned_cols=148 Identities=12% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCCcHHHHHHHHHcCC-eEEEEc--CCHHH---HHHHHH--cCCCEEEE--cCHHHHHHHhhhCCCC-eEEEEEeeCCCc
Q psy9378 243 CNDSQMVLEVLAALGT-GFDCAS--KPISH---IRYAAE--YGIDTMTF--DNEIELQKVKQFHPTA-QLVIRIRCDAEV 311 (522)
Q Consensus 243 AN~~~~Vlk~L~~~G~-GfDvaS--K~~~e---L~~A~~--~Gv~~i~v--DS~~EL~~i~~~~~~~-~V~LRIn~~~~~ 311 (522)
+..-..+++.|.+.|+ -+|+.+ .++.+ ++...+ .++.+..+ -+...+++..+....+ .-.+++-...+
T Consensus 27 ~~~Kl~ia~~L~~~Gv~~IE~g~p~~~~~d~e~v~~i~~~~~~~~i~~l~r~~~~~i~~a~~al~~ag~~~v~i~~s~S- 105 (325)
T 3eeg_A 27 TEEKIIVAKALDELGVDVIEAGFPVSSPGDFNSVVEITKAVTRPTICALTRAKEADINIAGEALRFAKRSRIHTGIGSS- 105 (325)
T ss_dssp TTHHHHHHHHHHHHTCSEEEEECTTSCHHHHHHHHHHHHHCCSSEEEEECCSCHHHHHHHHHHHTTCSSEEEEEEEECS-
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHhHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHhhcccCCCEEEEEeccc-
Confidence 3334567777777885 677766 23333 333333 24433233 3566666554442211 11233332211
Q ss_pred ccCCCCCccccCcCC---CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCC
Q psy9378 312 AQCQLGMKFGCDPIS---EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG 388 (522)
Q Consensus 312 ~~~~~~sKFGi~~e~---e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGG 388 (522)
......+++.+.+. .+.+.++.+++.++.+. +.+-.++ ..+++.+.+ +++.+.+.|. ..|.|+-=
T Consensus 106 -d~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~-f~~~d~~-~~~~~~~~~-------~~~~~~~~G~--~~i~l~DT 173 (325)
T 3eeg_A 106 -DIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVE-FFCEDAG-RADQAFLAR-------MVEAVIEAGA--DVVNIPDT 173 (325)
T ss_dssp -HHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE-EEEETGG-GSCHHHHHH-------HHHHHHHHTC--SEEECCBS
T ss_pred -HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE-EEccccc-cchHHHHHH-------HHHHHHhcCC--CEEEecCc
Confidence 11112456777751 35567777888888754 2222222 234444333 3334445564 46776554
Q ss_pred CCCCCCCCHHHHHHHHHH
Q psy9378 389 YPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 389 f~~~~~~~~~~~a~~I~~ 406 (522)
.+... ..++.+.+..
T Consensus 174 ~G~~~---P~~v~~lv~~ 188 (325)
T 3eeg_A 174 TGYML---PWQYGERIKY 188 (325)
T ss_dssp SSCCC---HHHHHHHHHH
T ss_pred cCCcC---HHHHHHHHHH
Confidence 43322 4444444443
No 139
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=25.46 E-value=4.6e+02 Score=25.50 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=28.9
Q ss_pred HHHHH-hhCCCeEEEEEEecCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEc
Q psy9378 331 LLRLA-KSLDLDVVGVSFHVGS--GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLG 386 (522)
Q Consensus 331 ll~~~-k~~~L~l~GlhfH~GS--~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIG 386 (522)
.++.+ ++.|++.+.+.++... ...+++ .++...++++.+.+.|+.+ +||+-
T Consensus 73 ~~~~l~~~~G~N~VRi~~~~~~~~~~~~~~----~~~~ld~~v~~a~~~Gi~V-ilD~H 126 (327)
T 3pzt_A 73 SLKWLRDDWGITVFRAAMYTADGGYIDNPS----VKNKVKEAVEAAKELGIYV-IIDWH 126 (327)
T ss_dssp HHHHHHHHTCCSEEEEEEESSTTSTTTCGG----GHHHHHHHHHHHHHHTCEE-EEEEE
T ss_pred HHHHHHHhcCCCEEEEEeEECCCCcccCHH----HHHHHHHHHHHHHHCCCEE-EEEec
Confidence 34445 5678888888776532 222332 2344455666777777643 45654
No 140
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=25.35 E-value=3.6e+02 Score=27.87 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=43.9
Q ss_pred cCCCCCCCCccccccCCcceEEecCCCCCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHh-CCCCeEEeeecCC
Q psy9378 166 RVLPEFQPTISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLK-LPRVDPYYAVKCN 244 (522)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~-lp~~~i~YAvKAN 244 (522)
...++|.+...-+........+++-++. +-.+..+.+ ++.+.-.+-++.|.+. ++.+++-+. +++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~V~I~DtTLR----------DG~Q~~~~~---~s~eeKl~Ia~~L~~~Gv~~IEvG~P-~as 86 (423)
T 3ivs_A 21 MNGNPYGPNPSDFLSRVNNFSIIESTLR----------EGEQFANAF---FDTEKKIQIAKALDNFGVDYIELTSP-VAS 86 (423)
T ss_dssp --------CGGGGGCCTTSCEEEECTTT----------GGGGSTTCC---CCHHHHHHHHHHHHHHTCSEEEECCT-TSC
T ss_pred cCCCCCCCCccccccCCCcEEEEECCCC----------CCCCCCCCC---cCHHHHHHHHHHHHHcCCCEEEEeec-ccC
Confidence 4455566655555554455555544432 222222222 4555555555554442 222333332 344
Q ss_pred Cc-HHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEE
Q psy9378 245 DS-QMVLEVLAALGTGFDCAS---KPISHIRYAAEYGIDTM 281 (522)
Q Consensus 245 ~~-~~Vlk~L~~~G~GfDvaS---K~~~eL~~A~~~Gv~~i 281 (522)
+. ...++.+.+.+....+.+ -..++++.|++.|+..+
T Consensus 87 p~d~~~~~~i~~~~~~~~v~~~~r~~~~di~~A~~aG~~~V 127 (423)
T 3ivs_A 87 EQSRQDCEAICKLGLKCKILTHIRCHMDDARVAVETGVDGV 127 (423)
T ss_dssp HHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeeccChhhHHHHHHcCCCEE
Confidence 42 345566666654444443 34556777777776544
No 141
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=25.30 E-value=1.8e+02 Score=29.00 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHHhhhC-CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecC
Q psy9378 289 LQKVKQFH-PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVG 350 (522)
Q Consensus 289 L~~i~~~~-~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~G 350 (522)
++.+.+.. ++..|++|+++.... .=|.+.+ +..++++.+.+.|+.. ||.|.|
T Consensus 209 v~aVR~avG~d~pV~vRls~~~~~-------~~g~~~~-~~~~la~~L~~~Gvd~--i~vs~g 261 (349)
T 3hgj_A 209 AQAVREVVPRELPLFVRVSATDWG-------EGGWSLE-DTLAFARRLKELGVDL--LDCSSG 261 (349)
T ss_dssp HHHHHHHSCTTSCEEEEEESCCCS-------TTSCCHH-HHHHHHHHHHHTTCCE--EEEECC
T ss_pred HHHHHHHhcCCceEEEEecccccc-------CCCCCHH-HHHHHHHHHHHcCCCE--EEEecC
Confidence 34444443 456799999986421 1266676 7888888888888765 555544
No 142
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=24.89 E-value=1e+02 Score=30.52 Aligned_cols=82 Identities=7% Similarity=-0.008 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhC---CCCeEEEEEeeCCC---cc-cCCCCCccccCcCCCHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE------LQKVKQFH---PTAQLVIRIRCDAE---VA-QCQLGMKFGCDPISEAPRL 331 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~---~~~~V~LRIn~~~~---~~-~~~~~sKFGi~~e~e~~~l 331 (522)
.++++.+.+.+.|+..+..+.+.+ ++++.+.. ...+|.|-++.+.- .+ ........|++.. |+.++
T Consensus 182 ~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~~~~~~~vylSiDiDvLDpa~aPgtgtp~pgGlt~~-e~~~~ 260 (322)
T 2aeb_A 182 VDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYR-EGLYI 260 (322)
T ss_dssp CCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHSSSCCCEEEEEEGGGBCTTTCCSBSSCCSSCBCHH-HHHHH
T ss_pred CCHHHHHHHHHcCCEEEEHHHHHhhCHHHHHHHHHHHHhhcCCCeEEEEEecCcCCccccCCCCCCCCCCCCHH-HHHHH
Confidence 456777778788876555554432 22333322 23468998887632 11 1234578999998 99999
Q ss_pred HHHHhhCCCeEEEEEEe
Q psy9378 332 LRLAKSLDLDVVGVSFH 348 (522)
Q Consensus 332 l~~~k~~~L~l~GlhfH 348 (522)
++.+.+. .+++|+..=
T Consensus 261 l~~l~~~-~~vvg~Div 276 (322)
T 2aeb_A 261 TEEIYKT-GLLSGLDIM 276 (322)
T ss_dssp HHHHHHH-SCEEEEEEE
T ss_pred HHHHHcc-CCEEEEEEE
Confidence 9887542 246776654
No 143
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=24.37 E-value=96 Score=30.26 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhCC--CCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE------LQKVKQFHP--TAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLL 332 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~~--~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll 332 (522)
..+++.+.+.+.|+..+..+.+.+ ++++.+..+ ..+|.|-++.+.-. +. .......|++.. |+.+++
T Consensus 177 ~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~l~~~~~~~~~vylSiDiDvlDp~~aPgtgtp~pgGlt~~-e~~~~l 255 (299)
T 2cev_A 177 LDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYR-ESHLAM 255 (299)
T ss_dssp CCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCCCSSCCSSCBCHH-HHHHHH
T ss_pred CCHHHHHHHHHcCCeEEEHHHHhhcCHHHHHHHHHHHhccCCCeEEEEEccCccChhhcCCCCCCCCCCCCHH-HHHHHH
Confidence 445677777777776555444433 223322222 35799999876321 11 123467899998 999999
Q ss_pred HHHhhCCCeEEEEEEe
Q psy9378 333 RLAKSLDLDVVGVSFH 348 (522)
Q Consensus 333 ~~~k~~~L~l~GlhfH 348 (522)
+.+.+. .+++|+..=
T Consensus 256 ~~l~~~-~~vvg~Div 270 (299)
T 2cev_A 256 EMLAEA-QIITSAEFV 270 (299)
T ss_dssp HHHHHH-TCEEEEEEE
T ss_pred HHHhcC-CCEEEEEEE
Confidence 887542 246676654
No 144
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=24.28 E-value=96 Score=29.67 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCEEEE------cCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCe
Q psy9378 268 SHIRYAAEYGIDTMTF------DNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLD 341 (522)
Q Consensus 268 ~eL~~A~~~Gv~~i~v------DS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~ 341 (522)
.-+....+.|+..+-+ .+++|+..+++.+.+..+ =+-|- =||+.+ ...++++.+.+.|++
T Consensus 149 tAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~--~lEPT-----------GGIdl~-N~~~I~~i~l~aGv~ 214 (249)
T 3m0z_A 149 TAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDF--WLEPT-----------GGIDLE-NYSEILKIALDAGVS 214 (249)
T ss_dssp HHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTC--EEEEB-----------SSCCTT-THHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc--eECCC-----------CCccHh-hHHHHHHHHHHcCCC
Confidence 4667778889876654 789999999887644444 33443 289998 999999999888887
Q ss_pred EEEEEEec-----CCCCCChHHHHHHHHH
Q psy9378 342 VVGVSFHV-----GSGCGDPPVFGRAIYS 365 (522)
Q Consensus 342 l~GlhfH~-----GS~~~~~~~~~~ai~~ 365 (522)
.+--|.+. .++.+.++...+.++.
T Consensus 215 ~viPHIYssIIDk~TG~TrpedV~~ll~~ 243 (249)
T 3m0z_A 215 KIIPHIYSSIIDKASGNTRPADVRQLLEM 243 (249)
T ss_dssp CBCCBCCGGGBCTTTCCBCHHHHHHHHHH
T ss_pred eecccccceeccCCCCCCCHHHHHHHHHH
Confidence 66555542 2233445554444443
No 145
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=23.97 E-value=4.1e+02 Score=24.12 Aligned_cols=73 Identities=10% Similarity=0.026 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCeEEeeecCCCcH-HHHHHHHHcCC-eEEEEc-CCHH----HHHHHHHcCCCEE----EEcCHHHHHH
Q psy9378 223 RKHEDWKLKLPRVDPYYAVKCNDSQ-MVLEVLAALGT-GFDCAS-KPIS----HIRYAAEYGIDTM----TFDNEIELQK 291 (522)
Q Consensus 223 ~ni~~l~~~lp~~~i~YAvKAN~~~-~Vlk~L~~~G~-GfDvaS-K~~~----eL~~A~~~Gv~~i----~vDS~~EL~~ 291 (522)
+-++++++.+++..++.-+|-...+ ..++.+.+.|+ ++-+.. -..+ -++.+.++|+..+ ++.+.++++.
T Consensus 48 ~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~ 127 (218)
T 3jr2_A 48 KAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKA 127 (218)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHHH
Confidence 4567777777777777777877544 35677788886 444443 2222 2334556777522 1235567777
Q ss_pred Hhhh
Q psy9378 292 VKQF 295 (522)
Q Consensus 292 i~~~ 295 (522)
+.+.
T Consensus 128 ~~~~ 131 (218)
T 3jr2_A 128 WVDL 131 (218)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7655
No 146
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=23.77 E-value=2.5e+02 Score=23.82 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=32.5
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCC-CccEEEEcCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGF-SMRVLDLGGG 388 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~-~l~~LdIGGG 388 (522)
...++++.+++.+.+++|+++-.++. ...+.++++.+++.|. ++.+ =+||.
T Consensus 42 p~e~~v~~a~~~~~d~v~lS~~~~~~----------~~~~~~~i~~l~~~g~~~i~v-~vGG~ 93 (137)
T 1ccw_A 42 PQELFIKAAIETKADAILVSSLYGQG----------EIDCKGLRQKCDEAGLEGILL-YVGGN 93 (137)
T ss_dssp CHHHHHHHHHHHTCSEEEEEECSSTH----------HHHHTTHHHHHHHTTCTTCEE-EEEES
T ss_pred CHHHHHHHHHhcCCCEEEEEecCcCc----------HHHHHHHHHHHHhcCCCCCEE-EEECC
Confidence 46678888888899999999887542 1223345555666665 3444 45554
No 147
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=23.56 E-value=4.5e+02 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.043 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCeEEEEc-CCHHHHHHHHHcCCCEEEEcCHHHHHHH
Q psy9378 247 QMVLEVLAALGTGFDCAS-KPISHIRYAAEYGIDTMTFDNEIELQKV 292 (522)
Q Consensus 247 ~~Vlk~L~~~G~GfDvaS-K~~~eL~~A~~~Gv~~i~vDS~~EL~~i 292 (522)
+.+++.+.+.|..+-+=+ ..+++++.+++.||.-|..|..+.+.++
T Consensus 200 ~~~v~~~~~~G~~v~~WTvn~~~~~~~l~~~GVdgIiTD~P~~~~~~ 246 (252)
T 3qvq_A 200 VQQVSDIKAAGYKVLAFTINDESLALKLYNQGLDAVFSDYPQKIQSA 246 (252)
T ss_dssp HHHHHHHHHTTCEEEEECCCCHHHHHHHHHTTCCEEEESSHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCHHHHHHH
Confidence 344444444444333333 3444555555555555555555555444
No 148
>2vnl_A Bifunctional tail protein, PIIGCN4; chimera, hydrolase, late protein, viral protein, phage P22 tailspike protein, mutant Y108WDEL; 1.80A {Enterobacteria phage P22} PDB: 2vky_B
Probab=23.50 E-value=43 Score=29.70 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=40.0
Q ss_pred cccCCCCceEEeecCCCceeeeeh--hhc--cCcccccCCCCccCCCCCCCCccccccCCcceEEecCC
Q psy9378 127 KLQNPEDQIYVLDRGNDAVHVMKS--IIL--SGVPVYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRT 191 (522)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (522)
.-.||+.||=|.-|..|+-|+-++ |+| .|.|||| -+...||..+..++.+|+..
T Consensus 38 Dp~~~~Nqi~vy~~n~~g~~~qv~qPivin~ag~fv~n-----------g~l~~~vt~~ghsmavYd~~ 95 (151)
T 2vnl_A 38 DPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYN-----------GQLVKIVTVQGHSMAIYDAN 95 (151)
T ss_dssp CTTSGGGBCCEEEECTTSCEEEECSSEEECTTSCEEET-----------TEECCEECCSSCEEEEECTT
T ss_pred CCCCcccccceEEecCCCceeeeecceeeecCCceeeC-----------CEEEEEeccCCCcceEEecC
Confidence 346899999888888888887765 343 4777876 23367899999999998544
No 149
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=22.81 E-value=1.6e+02 Score=29.25 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=35.1
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCC--CChHHHHHHHHHHHHHHHHHhhcCCCccEEEE
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGC--GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDL 385 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~--~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdI 385 (522)
++.++.+.+++.||++.+++.-..... .+.+.+.+.++.+.+.++.+++.|.+.-.+|+
T Consensus 56 ~~~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~n~ 116 (367)
T 1tz9_A 56 EIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSF 116 (367)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 566666777788999987532111100 00123456677777778888888876544443
No 150
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=22.64 E-value=2.1e+02 Score=27.28 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
..+.++.+++.|++.+.+.++.|..... ..+++..++++.+++.|+.+ +||+-+
T Consensus 33 ~~~~~~~i~~~G~N~VRi~~~~~~~~~~-----~~~~~ld~~v~~a~~~Gi~V-ild~H~ 86 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRIVLSDGGQWEK-----DDIDTIREVIELAEQNKMVA-VVEVHD 86 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCSSSSCC-----CCHHHHHHHHHHHHTTTCEE-EEEECT
T ss_pred hHHHHHHHHHcCCCEEEEEecCCCccCc-----cHHHHHHHHHHHHHHCCCEE-EEEecc
Confidence 4456777788888888888875422211 12444556667777888654 567653
No 151
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A
Probab=22.51 E-value=1e+02 Score=31.04 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=35.6
Q ss_pred CHHHHHHHHhhCC--CeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCC--ccEEEEcCCCC
Q psy9378 327 EAPRLLRLAKSLD--LDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFS--MRVLDLGGGYP 390 (522)
Q Consensus 327 e~~~ll~~~k~~~--L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~--l~~LdIGGGf~ 390 (522)
...++++.+++.| |.-+|++.|++.+....+.+.+.+ +.+.+.|.+ ++.|||....+
T Consensus 204 ~~~~lv~~l~~~GvpIdgIG~Q~H~~~~~~~~~~~~~~l-------~~~a~lGl~v~iTElDv~~~~~ 264 (341)
T 3niy_A 204 FVYNMIKELKEKGVPVDGIGFQMHIDYRGLNYDSFRRNL-------ERFAKLGLQIYITEMDVRIPLS 264 (341)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCEEETTCCCHHHHHHHH-------HHHHHTTCEEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHCCCCcceEeeeeecCCCCCCHHHHHHHH-------HHHHHcCCeEEEEeccccCCCC
Confidence 3556777776665 678899999876644434443333 334456754 57889876543
No 152
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=22.16 E-value=4.7e+02 Score=25.87 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=34.1
Q ss_pred HHHHHHhhCCCeEEEEEEecCC--CC--CC-------hHHHHHHHHHHHHHHHHHhhcCCCc--cEEEEcCCCCC
Q psy9378 330 RLLRLAKSLDLDVVGVSFHVGS--GC--GD-------PPVFGRAIYSARQIFDLGNSLGFSM--RVLDLGGGYPG 391 (522)
Q Consensus 330 ~ll~~~k~~~L~l~GlhfH~GS--~~--~~-------~~~~~~ai~~~~~l~~~~~~~G~~l--~~LdIGGGf~~ 391 (522)
++++.+++.+..++.+|.. |. +. .. .+...+..+.+.+.++.+.+.|++. =+||-|=||+.
T Consensus 151 ~m~~vaa~~g~~vVlmh~~-G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDPG~GF~K 224 (318)
T 2vp8_A 151 AMPEVAAEFGAGLVCAHTG-GALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGK 224 (318)
T ss_dssp THHHHHHHHTCEEEEECC--------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEETTTTCCT
T ss_pred HHHHHHHHhCCCEEEECCC-CCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcCCCCccc
Confidence 3455566678888887753 21 10 01 1112223344455567778889874 37899888854
No 153
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=22.08 E-value=2.5e+02 Score=26.12 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=56.9
Q ss_pred CHHHHHHHHhhCCCeEEEEEEec--CC-----CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHV--GS-----GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNR 399 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~--GS-----~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~ 399 (522)
.+.+.++.++..|...+.++.|. |. .....+.+...++...++.+.+++.|+.+-+=+.++ +....-.+.++
T Consensus 89 ~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~-~~~~~~~~~~~ 167 (290)
T 2qul_A 89 YVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEVVNR-FEQWLCNDAKE 167 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEEECCCT-TTCSSCCSHHH
T ss_pred HHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCcc-ccccccCCHHH
Confidence 35566666777888777666664 43 112345666667777777788888898765555543 32222234555
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEecCcceeec
Q psy9378 400 IAEIINVALDEYFPVEEGVSIIAEPGRYYVA 430 (522)
Q Consensus 400 ~a~~I~~~l~~~~~~~~~~~li~EPGR~lva 430 (522)
+.+.+ +.+. .+.+.+.+-+|-...+
T Consensus 168 ~~~l~-~~~~-----~~~~g~~~D~~h~~~~ 192 (290)
T 2qul_A 168 AIAFA-DAVD-----SPACKVQLDTFHMNIE 192 (290)
T ss_dssp HHHHH-HHHC-----CTTEEEEEEHHHHHHH
T ss_pred HHHHH-HHcC-----CCCEEEEEEchhhhhc
Confidence 54433 2221 2457778877766553
No 154
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=21.39 E-value=4.2e+02 Score=25.50 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=29.5
Q ss_pred EeHHHHHHHHHHHHHh-CCCCeEEe--eecCCC---c-HHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCCCEE
Q psy9378 216 LDVGEIVRKHEDWKLK-LPRVDPYY--AVKCND---S-QMVLEVLAAL-GTGFDCASKPISHIRYAAEYGIDTM 281 (522)
Q Consensus 216 ~Dl~~I~~ni~~l~~~-lp~~~i~Y--AvKAN~---~-~~Vlk~L~~~-G~GfDvaSK~~~eL~~A~~~Gv~~i 281 (522)
++.+...+-++++.+. ++.+.+-+ +-|+-+ + ..+++.+.+. |.-+-+-.-...+++.|++.|+..+
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~ag~~~v 97 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEV 97 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEECCSHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEcCCHHhHHHHHHCCCCEE
Confidence 5666666666666553 22222222 112111 1 2344444432 3211111133566777777776643
No 155
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=20.58 E-value=5.5e+02 Score=24.38 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHHh-hCCCeEEEEEEecCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEc
Q psy9378 330 RLLRLAK-SLDLDVVGVSFHVGS--GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLG 386 (522)
Q Consensus 330 ~ll~~~k-~~~L~l~GlhfH~GS--~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIG 386 (522)
+.++.++ +.|++.+.+.++... ...+++ .++...++++.+.+.|+.+ +||+-
T Consensus 47 ~~~~~l~~~~G~N~VRip~~~~~~~~~~~~~----~~~~ld~~v~~a~~~Gi~V-ild~H 101 (303)
T 7a3h_A 47 ESMKWLRDDWGINVFRAAMYTSSGGYIDDPS----VKEKVKEAVEAAIDLDIYV-IIDWH 101 (303)
T ss_dssp HHHHHHHHHTCCCEEEEEEESSTTSTTTCTT----HHHHHHHHHHHHHHHTCEE-EEEEE
T ss_pred HHHHHHHHhcCCCEEEEEEEeCCCCccCCHH----HHHHHHHHHHHHHHCCCEE-EEEec
Confidence 3445554 678888888887532 222333 2344445667777777643 45553
No 156
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=20.58 E-value=1.3e+02 Score=30.07 Aligned_cols=83 Identities=17% Similarity=0.066 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHcCCCEEEEcCH----H-HHHHHhhhC-CCCeEEEEEeeCCC---ccc-CCCCCccccCcCCCHHHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNE----I-ELQKVKQFH-PTAQLVIRIRCDAE---VAQ-CQLGMKFGCDPISEAPRLLRL 334 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~----~-EL~~i~~~~-~~~~V~LRIn~~~~---~~~-~~~~sKFGi~~e~e~~~ll~~ 334 (522)
..++|.+++.+.|+..+..+.+ . -++++.+.. ...+|.|-++.+.- .+. .......|++.. |+..+++.
T Consensus 187 ~~~~e~~~~~~~gi~~~~~~ei~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~pgGlt~~-e~~~il~~ 265 (330)
T 4g3h_A 187 TEQSERDVIRELQIPLFSVDAIRENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVRENNGLSFD-ELKQLLGL 265 (330)
T ss_dssp CCHHHHHHHHHHTCCEECHHHHHHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCCSSCBCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHcCCeEEEHHHhhcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCCCCCCCHH-HHHHHHHH
Confidence 3467778888888875544333 0 023333322 23578898887632 111 123467899998 99999998
Q ss_pred HhhC-CCeEEEEEEe
Q psy9378 335 AKSL-DLDVVGVSFH 348 (522)
Q Consensus 335 ~k~~-~L~l~GlhfH 348 (522)
+.+. +.+++|+..=
T Consensus 266 l~~~~~~~vvg~Div 280 (330)
T 4g3h_A 266 LLESFKDRLKAVEVT 280 (330)
T ss_dssp HHHHTTTTEEEEEEE
T ss_pred HHhhCCCCEEEEEEE
Confidence 8541 3467777664
No 157
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=20.48 E-value=5.1e+02 Score=24.56 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHHHHH-hhCCCeEEEEEEecCCC--CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEc
Q psy9378 330 RLLRLA-KSLDLDVVGVSFHVGSG--CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLG 386 (522)
Q Consensus 330 ~ll~~~-k~~~L~l~GlhfH~GS~--~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIG 386 (522)
+-++.+ ++.|++.+.+.++.... ..+++.+ ++...++++.+.+.|+.+ +||+-
T Consensus 46 ~d~~~l~~~~G~N~vRi~~~~~~~~~~~~~~~~---l~~ld~~v~~a~~~Gl~v-ild~h 101 (306)
T 2cks_A 46 SSLDALAYDWKADIIRLSMYIQEDGYETNPRGF---TDRMHQLIDMATARGLYV-IVDWH 101 (306)
T ss_dssp HHHHHHHHTSCCSEEEEEEESSTTSGGGCHHHH---HHHHHHHHHHHHTTTCEE-EEEEE
T ss_pred HHHHHHHHHcCCCEEEEEeeecCCCcccCHHHH---HHHHHHHHHHHHHCCCEE-EEEec
Confidence 334444 35688877777764211 1233223 344455666677777654 55654
No 158
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=20.14 E-value=1.3e+02 Score=30.09 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=48.2
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-CCHHHHHHHHHcCCCEEEEcCHHHH
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-KPISHIRYAAEYGIDTMTFDNEIEL 289 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-K~~~eL~~A~~~Gv~~i~vDS~~EL 289 (522)
.|--++|.++|++- ++.. ++-+-..-=+.-.+.+++.+.+.|--+.-+. .+.++|+.|++.||..||+|+.-.+
T Consensus 186 ~p~~~L~~~~L~~I----~~~~-~vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e~i~~ai~~GV~KiNi~Tdl~~ 260 (323)
T 2isw_A 186 ESDIRLAIDRVKTI----SDLT-GIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDSRM 260 (323)
T ss_dssp ----CCCCHHHHHH----HHHH-CSCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred CcccccCHHHHHHH----HHHh-CCCeEEECCCCCCHHHHHHHHHhccccccCCCCCHHHHHHHHHCCCeEEEEChHHHH
Confidence 34334666666553 3322 2333333334445678888888875443222 7789999999999988999987766
Q ss_pred HHHh
Q psy9378 290 QKVK 293 (522)
Q Consensus 290 ~~i~ 293 (522)
....
T Consensus 261 A~~~ 264 (323)
T 2isw_A 261 AMTG 264 (323)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
Done!