RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9379
(161 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 130 bits (328), Expect = 8e-36
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 74
SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGIL 522
Query: 75 CVLDDQ 80
+LD++
Sbjct: 523 DILDEE 528
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 128 bits (323), Expect = 3e-35
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 74
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456
Query: 75 CVLDDQ 80
+LD+
Sbjct: 457 SLLDEA 462
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 123 bits (311), Expect = 1e-33
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 74
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 75 CVLDDQ 80
+LD++
Sbjct: 507 DLLDEE 512
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 122 bits (308), Expect = 3e-33
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 74
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 75 CVLDDQ 80
+LD++
Sbjct: 507 DLLDEE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 118 bits (298), Expect = 9e-32
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 72
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 73 LLCVLDDQ 80
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 117 bits (295), Expect = 2e-31
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 73
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G+
Sbjct: 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
Query: 74 LCVLDDQ 80
+ +L+++
Sbjct: 531 MSILEEE 537
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 117 bits (294), Expect = 3e-31
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 73
SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
Query: 74 LCVLDDQ 80
L +L+++
Sbjct: 530 LSILEEE 536
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 117 bits (294), Expect = 3e-31
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 71
SFEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P
Sbjct: 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPP 503
Query: 72 GLLCVLDDQ 80
GLL +LD++
Sbjct: 504 GLLALLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 116 bits (292), Expect = 4e-31
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 72
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 73 LLCVLDDQ 80
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 111 bits (278), Expect = 3e-29
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PN 71
SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 534
Query: 72 GLLCVLDDQ 80
G+L +LD++
Sbjct: 535 GVLALLDEE 543
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 2e-04
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 59/147 (40%)
Query: 9 AFSDEI-SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV- 66
A +D SF + F + G+R + + + +L ++
Sbjct: 284 AETDSWESFFVSVRKA----ITVLF--FI-----------GVR-CYEAYPNTSLPPSILE 325
Query: 67 ------EGKPNGLLCVLD----------DQANTHLLCTSFLSI-----P------GH--- 96
EG P+ +L + + ++ N+HL + I G
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 97 ---------KERVEKEKDKGRIRSKER 114
K + D+ RI ER
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSER 412
Score = 27.3 bits (60), Expect = 3.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 4 YLALNAFSDEISFEQLC 20
Y AL + +D +S E L
Sbjct: 1767 YAALASLADVMSIESLV 1783
Score = 26.2 bits (57), Expect = 6.1
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 26/84 (30%)
Query: 36 VF--QYEQEEYNKEGIR--WRH--------IEFSDNTLCLQLVEGK-------PNGL--L 74
+F Q ++Y +E +R ++ I+FS TL +L+ GL L
Sbjct: 159 IFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLNIL 216
Query: 75 CVLDDQANTH---LLCTSFLSIPG 95
L++ +NT L + +S P
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPL 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.011
Identities = 23/133 (17%), Positives = 33/133 (24%), Gaps = 31/133 (23%)
Query: 5 LALNAFSDE-----ISFEQLCINYAN--------EHLQYYFNQHVFQYEQEEYNKEGIRW 51
+AL+ + F+ +N N E LQ Q + + I+
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 52 RHIEFSDNTLCLQLVEGKPNGLLCVLDDQANTHLL------C-----------TSFLSIP 94
R L + N LL VL + N C T FLS
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 95 GHKERVEKEKDKG 107
Sbjct: 285 TTTHISLDHHSMT 297
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.19
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 19/61 (31%)
Query: 98 ERVEKEKDKGRIRSKERGEEEGKKKKGTGSLMKIRRTQGKKYWFCKMAMKSTCSSTDWTE 157
E + K +++ R R +E ++ R + KK +W +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEW-------REKAKKDL------------EEWNQ 125
Query: 158 N 158
Sbjct: 126 R 126
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 27.0 bits (60), Expect = 1.9
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 91 LSIPGHKERVEKEKDKGRIRSKER 114
L I + + + + I S+
Sbjct: 91 LEIRAKRSPLMITESERIIYSEIP 114
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.4 bits (58), Expect = 3.8
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 25 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 58
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate
specificity, pectin, GH-A, family 53, plant cell WALL
degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis}
SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A*
2gft_A*
Length = 399
Score = 26.7 bits (58), Expect = 4.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 127 SLMKIRRTQGKKYWFCKMAMKSTCSSTDWTENS 159
L + T GKK + + T D N+
Sbjct: 247 VLTSVADTYGKKVMVAETSYTYTAEDGDGHGNT 279
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like
domain, UBL, ubiquitin specific protease, HOST-virus
interaction, nucleus, protease; NMR {Homo sapiens}
Length = 130
Score = 26.0 bits (57), Expect = 4.5
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 92 SIPGH-KERVEKEKDKGRIRSKERGEE 117
P ER+++EK + KER E
Sbjct: 1 GSPQQLVERLQEEKRIEAQKRKERQEA 27
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 25.4 bits (55), Expect = 9.9
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 39 YEQEEYNKEGIRWRHIEFSDNT 60
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,434,517
Number of extensions: 131307
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 26
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)