RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9379
(161 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 74.3 bits (182), Expect = 7e-17
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 74
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 75 CVLDDQ 80
+LD+
Sbjct: 449 SLLDEA 454
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 69.7 bits (170), Expect = 3e-15
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 74
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+
Sbjct: 425 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIF 484
Query: 75 CVLDDQ 80
+L+++
Sbjct: 485 SILEEE 490
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 69.0 bits (168), Expect = 6e-15
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 14 ISFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KP 70
SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 396 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 455
Query: 71 NGLLCVLDDQANTH 84
G+L +LD++
Sbjct: 456 PGVLALLDEECWFP 469
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 68.2 bits (166), Expect = 1e-14
Identities = 34/70 (48%), Positives = 44/70 (62%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 74
SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+L
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482
Query: 75 CVLDDQANTH 84
+L+++
Sbjct: 483 SILEEECMFP 492
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 67.1 bits (163), Expect = 3e-14
Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 15 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 74
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+L
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 444
Query: 75 CVLDDQANT 83
+LD++
Sbjct: 445 DLLDEECKM 453
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 63.9 bits (155), Expect = 4e-13
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 14 ISFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPN 71
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P
Sbjct: 417 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 476
Query: 72 GLLCVLDDQ 80
G+L +LD+Q
Sbjct: 477 GILALLDEQ 485
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.6 bits (56), Expect = 3.1
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 21 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 59
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 25.5 bits (55), Expect = 3.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 94 PGHKERVEKEKDKGRIRSKER 114
G VEK+ KG++ ++ER
Sbjct: 22 AGSARAVEKQHAKGKLTARER 42
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 25.1 bits (54), Expect = 4.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 95 GHKERVEKEKDKGRIRSKER 114
G E+VEK+ G++ + ER
Sbjct: 21 GGPEKVEKQHRAGKLTAWER 40
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 258
Score = 24.7 bits (53), Expect = 5.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 94 PGHKERVEKEKDKGRIRSKER 114
P ++ VEK KG++ ++ER
Sbjct: 23 PVGEDAVEKVHAKGKLTARER 43
>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus
subtilis [TaxId: 1423]}
Length = 74
Score = 23.2 bits (50), Expect = 8.9
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 5 LALNAFSD------EISFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 47
A A+ D + ++ +Y + Y F ++Y E
Sbjct: 23 FANQAYEDHSFPKTSTDYHEIS-SYLELNADYLHTMATFDEAWDQYESE 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,148
Number of extensions: 27157
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 18
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)