BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy938
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 9/198 (4%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G KFGK+ IWLD + +S +E YQ+ I T D +V LK F+F S
Sbjct: 217 GLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQDLDSLGSLNAT 127
IE +++ PE+R AQK LAE++T LVHGEE L+ A ++AL+S D+ +L
Sbjct: 277 EIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQAIRISEALFSGDIANL------ 330
Query: 128 DASRIFPGARIVELLMEPG--MSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQ 185
A+ I G + V + G + ++EL ++ P ++A I G YVN +++Q+
Sbjct: 331 TAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVG 390
Query: 186 EVLSPSAHILPNSLTLLR 203
+L+ + H L T++R
Sbjct: 391 AILT-AEHRLEGRFTVIR 407
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 19/203 (9%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G+KFGKS A+WLD++ +S +E YQ+ I D +V LK F+F
Sbjct: 218 GLTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKE 277
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQDLDSLGSLNAT 127
I+ ++ P R AQK LAE++T +HGE+ L A +QAL+S DL SL +
Sbjct: 278 EIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELK 337
Query: 128 DASRIFP-------GARIVELLMEPGMSMLELSLATKCFPRDKEANLTISEGGFYVNYKK 180
D + P IVE+L+E G+S P ++A ++ G Y+N ++
Sbjct: 338 DGFKDVPQVTLSNDTTNIVEVLIETGIS-----------PSKRQAREDVNNGAIYINGER 386
Query: 181 VQNPQEVLSPSAHILPNSLTLLR 203
Q+ L+P I T++R
Sbjct: 387 QQDVNYALAPEDKI-DGEFTIIR 408
>pdb|2PID|A Chain A, Crystal Structure Of Human Mitochondrial Tyrosyl-trna
Synthetase In Complex With An Adenylate Analog
pdb|2PID|B Chain B, Crystal Structure Of Human Mitochondrial Tyrosyl-trna
Synthetase In Complex With An Adenylate Analog
pdb|3ZXI|A Chain A, Crystal Structure Of Human Mitochondrial Tyrosyl-Trna
Synthetase In Complex With A Tyrosyl-Adenylate Analog
pdb|3ZXI|B Chain B, Crystal Structure Of Human Mitochondrial Tyrosyl-Trna
Synthetase In Complex With A Tyrosyl-Adenylate Analog
Length = 356
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 71/109 (65%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
G+T P+I S +G K GKSA NA+WL+ +S FELYQ+ +R D V LKLF+F L
Sbjct: 241 GITVPLITSTTGAKLGKSAGNAVWLNRDKTSPFELYQFFVRQPDDSVERYLKLFTFLPLP 300
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQ 116
I+ + + +PE R QK+LA ++T LVHG EGL SAK TQALY +
Sbjct: 301 EIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGREGLDSAKRCTQALYHR 349
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 110/205 (53%), Gaps = 21/205 (10%)
Query: 9 LTTPIIESESGEKFGKS-ARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
LT P++ + G KFGKS ++WLD +++S + YQY + T D++V L+ F+F S
Sbjct: 219 LTVPLVTAADGTKFGKSTGGGSLWLDPQMTSPYAWYQYFVNTADADVIRYLRWFTFLSAD 278
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQD----LDS--- 120
+ + ++ +P++R AQ++LA +LT+LVHGE + + A++AL+ + LD
Sbjct: 279 ELAELEQATAQRPQQRAAQRRLASELTVLVHGEAATAAVEHASRALFGRGELARLDEATL 338
Query: 121 LGSLNATDASRIFPGA--RIVELLMEPGMSMLELSLATKCFPRDKEANLTISEGGFYVNY 178
+L T + + PG+ IV+LL+ G+S A+K R TI EGG VN
Sbjct: 339 AAALRETTVAELKPGSPDGIVDLLVASGLS------ASKGAARR-----TIHEGGVSVNN 387
Query: 179 KKVQNPQEVLSPSAHILPNSLTLLR 203
+V N + V S + L L R
Sbjct: 388 IRVDNEEWVPQSSDFLHGRWLVLRR 412
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P+I G KFGK+ A+WLD K +S ++ YQ+ I T D++VY LK F+F S+
Sbjct: 222 GLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIE 281
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAK 107
I + ++++ + RAQ LAE +T LVHGEEGL++AK
Sbjct: 282 EINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAK 321
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P+I G KFGK+ A+WLD K +S ++ YQ+ I T D++VY LK F+F S+
Sbjct: 221 GLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIE 280
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAK 107
I + ++++ + RAQ LAE +T LVHGEEGL++AK
Sbjct: 281 EINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAK 320
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P+I G KFGK+ A+WLD K +S ++ YQ+ I T D++VY LK F+F S+
Sbjct: 222 GLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIE 281
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAK 107
I + ++++ + RAQ LAE +T LVHGEEGL++AK
Sbjct: 282 EINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAK 321
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P+I G KFGK+ A+WLD K +S ++ YQ+ I T D++VY LK F+F S+
Sbjct: 218 GLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIE 277
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAK 107
I + ++++ + RAQ LAE +T LVHGEEGL++AK
Sbjct: 278 EINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAK 317
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P+I G KFGK+ A+WLD K +S ++ YQ+ I T D++VY LK F+F S+
Sbjct: 218 GLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIE 277
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAK 107
I + ++++ + RAQ LAE +T LVHGEEGL++AK
Sbjct: 278 EINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAK 317
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G KFGK+ IWLD + +S +E YQ+ I T D +V LK F+F S
Sbjct: 217 GLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSA 106
IE +++ PE+R AQK LAE++T LVHGEE L+ A
Sbjct: 277 EIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQA 315
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G KFGK+ IWLD + +S +E YQ+ I T D +V LK F+F S
Sbjct: 217 GLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSA 106
IE +++ PE+R AQK LAE++T LVHGEE L+ A
Sbjct: 277 EIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQA 315
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G KFGK+ IWLD + +S +E YQ+ I T D +V LK F+F S
Sbjct: 217 GLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSA 106
IE +++ PE+R AQK LAE++T LVHGEE L+ A
Sbjct: 277 EIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQA 315
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G KFGK+ IWLD + +S +E YQ+ I T D +V LK F+F S
Sbjct: 217 GLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSA 106
IE +++ PE+R AQK LAE++T LVHGEE L+ A
Sbjct: 277 EIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQA 315
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G KFGK+ IWLD + +S +E YQ+ I T D +V LK F+F S
Sbjct: 217 GLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSA 106
IE +++ PE+R AQK LAE++T LVHGEE L+ A
Sbjct: 277 EIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQA 315
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
G T P++ SG KFGKSA NAIWLD +S F+ Y Y +R D EV +LLKLF+F ++
Sbjct: 280 GFTVPLLTDSSGAKFGKSAGNAIWLDPYQTSVFDFYGYFVRRSDQEVENLLKLFTFMPIS 339
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQDL 118
I ++ P +R AQ LA ++ LVHG++ +A+ + +Y+ +
Sbjct: 340 EITKTMEEHIKDPSKRVAQHTLAREVVTLVHGKQEASAAEDQHRMMYTGQM 390
>pdb|2CFU|A Chain A, Crystal Structure Of Sdsa1, An Alkylsulfatase From
Pseudomonas Aeruginosa, In Complex With
1-Decane-Sulfonic- Acid.
pdb|2CFZ|A Chain A, Crystal Structure Of Sdsa1, An Alkylsulfatase From
Pseudomonas Aeruginosa, In Complex With 1-Dodecanol
pdb|2CG2|A Chain A, Crystal Structure Of Sdsa1, An Alkylsulfatase From
Pseudomonas Aeruginosa, In Complex With Sulfate
Length = 658
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 14 IESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIE 70
+++++ E+ G A NA W +S LS+++EL + R + + +K S D+LAA++
Sbjct: 488 LQADALEQLGYQAENAGWRNSYLSAAYELRHGVPRDQPT-----MKAGSADALAAMD 539
>pdb|2CG3|A Chain A, Crystal Structure Of Sdsa1, An Alkylsulfatase From
Pseudomonas Aeruginosa
Length = 658
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 14 IESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIE 70
+++++ E+ G A NA W +S LS+++EL + R + + K S D+LAA +
Sbjct: 488 LQADALEQLGYQAENAGWRNSYLSAAYELRHGVPRDQPTX-----KAGSADALAAXD 539
>pdb|1V9N|A Chain A, Structure Of Malate Dehydrogenase From Pyrococcus
Horikoshii Ot3
Length = 360
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 50 KDSEVYDLLKLFSFDSLAAIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGL 103
K S V + + +E+FK + EE ++ +K E + +HGE+G
Sbjct: 274 KGSNVCHFFXVIDIEHFIPLEEFKEKISQXIEEIKSSRKHPEFERIWIHGEKGF 327
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 83 RRAQKKLAEDLTLLVHGEEGLKSAKLATQALYS--QDLDSLGSLNATDASRIFPGARIVE 140
R+ K+ ++ L+L++ + G K K A + Q DS+ F GA +++
Sbjct: 177 RQRAKECSQALSLILDIDHG-KPVKNALDLKFDMEQLKDSIDREKIAVIGHXFGGATVIQ 235
Query: 141 LLMEPGMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVL 188
L E ++L FP E I + F++N + Q P ++
Sbjct: 236 TLSEDQRFRCGIALDAWMFPLGDEVYSRIPQPLFFINSEYFQYPANII 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,079,877
Number of Sequences: 62578
Number of extensions: 213785
Number of successful extensions: 381
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 21
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)