Query psy938
Match_columns 241
No_of_seqs 169 out of 1271
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 17:37:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jan_A Tyrosyl-tRNA synthetase 100.0 5.8E-52 2E-56 391.5 20.8 209 3-216 213-424 (432)
2 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.6E-52 5.4E-57 394.3 11.0 207 3-214 212-418 (419)
3 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 3E-52 1E-56 392.8 12.2 207 3-214 213-419 (420)
4 1h3f_A Tyrosyl-tRNA synthetase 100.0 1E-41 3.5E-46 322.0 20.6 186 2-215 212-431 (432)
5 1y42_X Tyrosyl-tRNA synthetase 100.0 4.9E-30 1.7E-34 239.6 11.6 114 4-117 276-389 (392)
6 2pid_A Tyrosyl-tRNA synthetase 100.0 9.2E-30 3.1E-34 235.2 9.8 115 3-117 236-350 (356)
7 2yxn_A Tyrosyl-tRNA synthetase 99.9 1.7E-26 5.9E-31 210.6 7.2 104 4-107 218-321 (322)
8 1n3l_A Tyrosyl-tRNA synthetase 99.8 1.7E-20 5.7E-25 174.1 6.0 111 3-117 204-340 (372)
9 2el7_A Tryptophanyl-tRNA synth 99.8 3.5E-19 1.2E-23 163.3 10.6 98 5-107 176-292 (337)
10 2dlc_X Tyrosyl-tRNA synthetase 99.8 6.4E-19 2.2E-23 164.6 7.6 112 3-117 208-354 (394)
11 2g36_A Tryptophanyl-tRNA synth 99.7 3.6E-18 1.2E-22 156.7 10.5 91 8-102 192-298 (340)
12 3tzl_A Tryptophanyl-tRNA synth 99.7 3.1E-18 1.1E-22 156.1 7.6 93 5-102 176-282 (322)
13 1yi8_B Tryptophanyl-tRNA synth 99.7 2.1E-17 7.1E-22 152.3 10.6 95 5-103 197-309 (351)
14 2cya_A Tyrosyl-tRNA synthetase 99.7 1.4E-17 4.9E-22 154.0 9.3 98 3-103 203-344 (364)
15 2ktl_A Tyrosyl-tRNA synthetase 99.7 9.8E-18 3.4E-22 139.0 5.9 84 132-216 31-137 (164)
16 2cyc_A Tyrosyl-tRNA synthetase 99.7 2.4E-17 8.3E-22 153.1 8.9 96 5-103 217-357 (375)
17 1r6u_A Tryptophanyl-tRNA synth 99.7 5.7E-17 2E-21 153.1 8.0 96 4-103 283-401 (437)
18 2ip1_A Tryptophanyl-tRNA synth 99.7 1.3E-16 4.5E-21 150.6 9.5 96 5-104 277-395 (432)
19 2zp1_A Tyrosyl-tRNA synthetase 99.7 9.9E-17 3.4E-21 145.6 8.0 97 4-103 186-305 (314)
20 1r6t_A Tryptophanyl-tRNA synth 99.6 1.4E-16 4.9E-21 151.9 8.0 95 4-102 330-447 (477)
21 2cyb_A Tyrosyl-tRNA synthetase 99.6 3.6E-16 1.2E-20 142.3 7.8 96 3-101 196-316 (323)
22 3hzr_A Tryptophanyl-tRNA synth 99.6 1.9E-15 6.7E-20 140.7 8.7 95 4-102 251-367 (386)
23 1i6k_A TRPRS, tryptophanyl-tRN 99.6 1E-15 3.5E-20 139.8 5.6 87 11-101 180-284 (328)
24 3jxe_A Tryptophanyl-tRNA synth 99.6 6.5E-15 2.2E-19 137.4 9.6 96 4-102 234-352 (392)
25 3hv0_A Tryptophanyl-tRNA synth 99.6 5.1E-15 1.7E-19 138.2 8.8 97 3-103 246-365 (393)
26 3i05_A Tryptophanyl-tRNA synth 99.5 3.1E-15 1.1E-19 139.8 5.9 95 3-101 250-366 (395)
27 3tze_A Tryptophanyl-tRNA synth 99.5 9.8E-15 3.3E-19 136.8 9.3 97 3-103 269-388 (406)
28 2j5b_A Tyrosyl-tRNA synthetase 99.5 4.4E-15 1.5E-19 136.5 6.4 94 4-101 213-325 (348)
29 2yy5_A Tryptophanyl-tRNA synth 99.5 4.4E-15 1.5E-19 136.6 5.6 93 5-101 182-303 (348)
30 3vgj_A Tyrosyl-tRNA synthetase 99.5 4.1E-14 1.4E-18 131.2 7.4 95 5-102 229-351 (373)
31 3p0j_A Tyrosyl-tRNA synthetase 99.5 6.4E-14 2.2E-18 138.8 9.0 92 5-99 212-340 (690)
32 3foc_A Tryptophanyl-tRNA synth 99.4 6.9E-13 2.4E-17 125.6 8.9 95 4-102 314-431 (451)
33 3a04_A Tryptophanyl-tRNA synth 99.2 5E-11 1.7E-15 110.5 11.4 92 5-99 240-351 (372)
34 3sz3_A Tryptophanyl-tRNA synth 99.2 6.5E-12 2.2E-16 115.2 3.3 85 11-101 189-296 (341)
35 3prh_A Tryptophanyl-tRNA synth 99.2 1.6E-11 5.6E-16 114.3 5.4 89 6-101 202-318 (388)
36 3n9i_A Tryptophanyl-tRNA synth 99.2 1.5E-11 5.2E-16 113.0 5.1 85 12-100 196-300 (346)
37 1p9k_A ORF, hypothetical prote 98.5 4.5E-08 1.5E-12 71.2 3.7 59 145-211 19-77 (79)
38 3p0j_A Tyrosyl-tRNA synthetase 98.5 7.7E-08 2.6E-12 95.4 6.4 90 7-99 548-663 (690)
39 2cqj_A BRMS2, U3 small nucleol 98.2 1.4E-06 4.8E-11 62.4 4.5 44 147-190 8-51 (71)
40 3j20_D 30S ribosomal protein S 97.8 2E-05 6.8E-10 66.1 4.5 46 146-191 102-147 (180)
41 1c05_A Ribosomal protein S4 de 97.7 4.8E-05 1.6E-09 62.4 6.0 46 146-191 50-95 (159)
42 3u5c_J 40S ribosomal protein S 97.7 2.7E-05 9.1E-10 66.1 4.3 46 146-191 106-151 (197)
43 2xzm_D Ribosomal protein S4 co 97.6 6.2E-05 2.1E-09 63.1 5.0 46 146-191 106-151 (181)
44 2vqe_D 30S ribosomal protein S 97.2 0.00042 1.4E-08 59.2 6.2 46 146-191 98-143 (209)
45 1dm9_A Hypothetical 15.5 KD pr 97.2 0.0017 5.7E-08 51.6 9.2 65 145-217 7-71 (133)
46 3r8n_D 30S ribosomal protein S 97.0 0.0003 1E-08 60.0 2.9 46 146-191 94-139 (205)
47 3bbn_D Ribosomal protein S4; s 96.9 0.00033 1.1E-08 59.6 2.5 45 147-191 89-133 (201)
48 3hp7_A Hemolysin, putative; st 96.9 0.00085 2.9E-08 59.9 4.6 46 146-191 6-53 (291)
49 2k6p_A Uncharacterized protein 96.7 0.00093 3.2E-08 49.2 3.0 43 148-191 2-44 (92)
50 3iz6_C 40S ribosomal protein S 96.4 5.5E-05 1.9E-09 64.1 -5.9 46 146-191 108-153 (195)
51 3dh3_A Ribosomal large subunit 96.3 0.0044 1.5E-07 55.3 5.4 45 145-191 5-49 (290)
52 1ksk_A Ribosomal small subunit 95.9 0.0073 2.5E-07 51.6 4.5 45 146-191 3-47 (234)
53 1vio_A Ribosomal small subunit 95.4 0.013 4.3E-07 50.5 4.4 44 147-191 3-46 (243)
54 3j20_E 30S ribosomal protein S 95.3 0.048 1.6E-06 47.5 7.8 73 146-219 42-120 (243)
55 2d5b_A Methionyl-tRNA syntheta 95.3 0.0048 1.6E-07 58.1 1.3 27 7-33 283-309 (500)
56 1irx_A Lysyl-tRNA synthetase; 94.8 0.015 5E-07 55.6 3.2 45 5-49 262-309 (523)
57 3kbg_A 30S ribosomal protein S 94.7 0.055 1.9E-06 46.2 6.2 46 146-191 7-53 (213)
58 3u1f_A Methionyl-tRNA syntheta 94.5 0.021 7.2E-07 54.2 3.7 18 16-33 318-335 (542)
59 1gax_A Valrs, valyl-tRNA synth 94.5 0.012 3.9E-07 59.8 1.8 41 8-48 515-557 (862)
60 2csx_A Methionyl-tRNA syntheta 94.4 0.0083 2.8E-07 56.6 0.6 40 8-48 283-324 (497)
61 1v9f_A Ribosomal large subunit 93.8 0.011 3.7E-07 53.1 0.0 46 146-191 16-61 (325)
62 1ile_A Ilers, isoleucyl-tRNA s 93.8 0.014 4.7E-07 58.7 0.8 41 8-48 578-620 (821)
63 1ffy_A Isoleucyl-tRNA syntheta 93.5 0.037 1.3E-06 56.5 3.1 42 8-49 582-625 (917)
64 3kfl_A Methionyl-tRNA syntheta 93.1 0.014 4.8E-07 56.2 -0.5 38 10-48 329-368 (564)
65 4dlp_A Aminoacyl-tRNA syntheta 93.1 0.015 5.1E-07 55.5 -0.4 24 9-33 310-333 (536)
66 1li5_A Cysrs, cysteinyl-tRNA s 93.1 0.031 1.1E-06 52.6 1.9 40 9-49 255-296 (461)
67 3c8z_A Cysteinyl-tRNA syntheta 93.0 0.013 4.6E-07 54.3 -0.8 18 17-34 287-304 (414)
68 3tqo_A Cysteinyl-tRNA syntheta 92.9 0.068 2.3E-06 50.6 3.8 37 13-49 261-299 (462)
69 2x1l_A Methionyl-tRNA syntheta 92.6 0.014 4.7E-07 55.4 -1.3 36 12-48 302-339 (524)
70 1rqg_A Methionyl-tRNA syntheta 92.6 0.017 5.9E-07 57.3 -0.8 40 9-49 333-374 (722)
71 1wkb_A Leucyl-tRNA synthetase; 92.6 0.028 9.4E-07 56.3 0.7 25 8-33 638-662 (810)
72 3h99_A Methionyl-tRNA syntheta 92.5 0.025 8.4E-07 54.3 0.3 31 18-48 342-374 (560)
73 1wz2_A Leucyl-tRNA synthetase; 92.4 0.029 9.8E-07 57.5 0.6 40 8-48 638-679 (967)
74 3sp1_A Cysteinyl-tRNA syntheta 92.1 0.018 6.1E-07 55.1 -1.2 33 17-49 295-330 (501)
75 1nzj_A Hypothetical protein YA 90.1 0.1 3.5E-06 46.5 1.7 28 6-34 213-240 (298)
76 2cfo_A Glutamyl-tRNA synthetas 89.9 0.16 5.3E-06 48.4 2.9 45 4-49 230-277 (492)
77 3iz6_D 40S ribosomal protein S 89.6 0.57 2E-05 41.1 6.1 73 146-219 41-119 (265)
78 2xzm_W 40S ribosomal protein S 88.2 1.1 3.8E-05 39.2 6.8 73 146-219 41-121 (260)
79 3fnr_A Arginyl-tRNA synthetase 84.0 0.17 5.7E-06 47.8 -0.6 26 9-34 270-298 (464)
80 3u5c_E RP5, S7, YS6, 40S ribos 83.7 0.55 1.9E-05 41.1 2.6 73 146-219 41-119 (261)
81 4arc_A Leucine--tRNA ligase; l 82.4 0.65 2.2E-05 47.2 2.9 13 21-33 639-651 (880)
82 4g6z_A Glutamate-tRNA ligase; 82.0 3.2 0.00011 39.4 7.3 58 4-62 247-314 (490)
83 2v0c_A Aminoacyl-tRNA syntheta 81.2 0.25 8.5E-06 50.2 -0.7 32 17-48 626-666 (878)
84 3al0_C Glutamyl-tRNA(Gln) amid 80.4 0.81 2.8E-05 44.5 2.7 40 9-49 347-389 (592)
85 2o5r_A Glutamyl-tRNA synthetas 79.7 0.8 2.7E-05 43.3 2.4 45 4-49 245-292 (481)
86 3afh_A Glutamyl-tRNA synthetas 79.7 0.92 3.2E-05 43.0 2.8 43 6-49 240-285 (488)
87 1iq0_A Arginyl-tRNA synthetase 79.3 0.33 1.1E-05 46.9 -0.4 18 17-34 390-407 (592)
88 1j09_A Glutamyl-tRNA synthetas 78.2 1.2 4E-05 42.1 3.0 43 5-49 228-273 (468)
89 2ja2_A Glutamyl-tRNA synthetas 77.0 4.4 0.00015 38.5 6.6 43 6-49 242-287 (498)
90 3fm8_A Kinesin-like protein KI 67.1 5.7 0.0002 30.6 4.0 34 171-213 89-122 (124)
91 4ejq_A Kinesin-like protein KI 62.3 7.5 0.00026 30.8 4.0 37 170-215 108-144 (154)
92 4gri_A Glutamate--tRNA ligase; 57.0 10 0.00036 35.8 4.7 45 4-49 256-303 (512)
93 3aii_A Glutamyl-tRNA synthetas 55.8 1.5 5E-05 42.4 -1.5 22 6-28 315-336 (553)
94 2zue_A Arginyl-tRNA synthetase 55.1 2.1 7.1E-05 41.7 -0.6 18 17-34 420-439 (629)
95 4egx_A Kinesin-like protein KI 53.2 14 0.00046 30.3 4.2 35 172-215 140-174 (184)
96 3uv0_A Mutator 2, isoform B; F 52.2 9.1 0.00031 28.8 2.7 35 171-209 61-95 (102)
97 1wln_A Afadin; beta sandwich, 37.2 23 0.00078 26.4 2.9 36 170-214 78-113 (120)
98 3hx1_A SLR1951 protein; P74513 36.1 32 0.0011 26.2 3.7 35 171-215 81-115 (131)
99 1uht_A Expressed protein; FHA 28.4 40 0.0014 24.8 3.0 37 171-215 75-112 (118)
100 3gqs_A Adenylate cyclase-like 27.8 40 0.0014 24.4 2.8 33 172-213 69-101 (106)
101 1mzk_A Kinase associated prote 26.8 57 0.0019 24.9 3.7 44 171-215 75-120 (139)
102 2jqj_A DNA damage response pro 26.6 80 0.0027 24.4 4.6 40 170-217 85-124 (151)
103 2kb3_A Oxoglutarate dehydrogen 22.2 65 0.0022 24.9 3.2 31 171-211 107-137 (143)
104 1qtq_A GLNRS, protein (glutami 21.6 30 0.001 33.2 1.3 13 16-28 262-274 (553)
105 1wv3_A Similar to DNA segregat 20.2 69 0.0024 26.9 3.2 40 171-212 134-174 (238)
106 4h87_A Kanadaptin; FHA domain 20.1 1.3E+02 0.0044 22.7 4.5 35 170-212 92-128 (130)
No 1
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.8e-52 Score=391.54 Aligned_cols=209 Identities=30% Similarity=0.507 Sum_probs=194.1
Q ss_pred CCCceeeecccccCCCCCccccCCCC-eEeecCCCCCHHHHHHHhhcCCChhHHHHHHHhcCCCHHHHHHHHHHhhcCCC
Q psy938 3 VTGDGGLTTPIIESESGEKFGKSARN-AIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIEDFKRQNEHKPE 81 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG~KmsKS~gn-~I~L~~~~Tsp~~~yq~~~~~~D~~v~~~l~~~t~l~~eei~~i~~~~~~~~~ 81 (241)
..+++++|+|+|||+||+|||||++| +|||+++||||+++||||+|++|++|.+|+++||+++.++|+++++++..+++
T Consensus 213 ~~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d~~tsp~~i~qki~~~~D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~ 292 (432)
T 2jan_A 213 GATVHALTVPLVTAADGTKFGKSTGGGSLWLDPQMTSPYAWYQYFVNTADADVIRYLRWFTFLSADELAELEQATAQRPQ 292 (432)
T ss_dssp CCCCEEEECCCCBCTTSCBTTBCSSSCBCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHSCCCHHHHHHHHHHHHHCGG
T ss_pred CCCccccccccccCCCcCcCCCCCCCCeEEccCCCCCHHHHHHHHhcCCchhHHHHHHHHHcCChHHHHHHHHHHhhccC
Confidence 35799999999999999999999999 99999999999999999999999999999999999999999999999988889
Q ss_pred hHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhccCCcccCCCCChhhHhhhcCCCceeeeccCCCC--cHHHHHHhcCCC
Q psy938 82 ERRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQDLDSLGSLNATDASRIFPGARIVELLMEPGM--SMLELSLATKCF 159 (241)
Q Consensus 82 ~~~~Kk~LA~~i~~~vhG~~~a~~A~~~~~~lF~~~~~~~~~l~~~~l~~~~~~~p~~~~~~~~~~--~l~~lLv~~gl~ 159 (241)
++++|+.||++|++++||++++++|+++++++|+.+ ++..++++++++.+.++|.+++. .+. ++.++|+.+|++
T Consensus 293 ~~~~K~~LA~~v~~~~hg~~~~~~a~~~~~~lf~~~--~~~~l~~~~~~~~~~~~p~~~~~--~~~~~~~~~ll~~~gl~ 368 (432)
T 2jan_A 293 QRAAQRRLASELTVLVHGEAATAAVEHASRALFGRG--ELARLDEATLAAALRETTVAELK--PGSPDGIVDLLVASGLS 368 (432)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS--CTTSCCHHHHHHHHHHSCEEEEC--SSSCCSHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCC--CcccCCHHHHHHHhccCCeeEec--ccchhhHHHHHHHhCCc
Confidence 999999999999999999999999999999999854 35678889999888889988874 244 799999999999
Q ss_pred CCHHHHHHHHHhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEEcc
Q psy938 160 PRDKEANLTISEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKSAN 216 (241)
Q Consensus 160 ~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~~~ 216 (241)
+|++||||+|+||||||||++|+|++..+... +++++++++||+|||+|++|+|..
T Consensus 369 ~S~~earr~i~~ggv~in~~~v~d~~~~~~~~-~~~~~~~~~l~~GKk~~~~v~~~~ 424 (432)
T 2jan_A 369 ASKGAARRTIHEGGVSVNNIRVDNEEWVPQSS-DFLHGRWLVLRRGKRSIAGVERIG 424 (432)
T ss_dssp SSHHHHHHHHTTTCEEESSCEECCTTCCCCGG-GSBTTTEEEEESSSSCEEEEEEC-
T ss_pred ccHHHHHHHHHhCCEEECCEEccChhcccChh-hccCCcEEEEEeCCeeEEEEEECC
Confidence 99999999999999999999999999988764 788999999999999999999953
No 2
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.6e-52 Score=394.30 Aligned_cols=207 Identities=33% Similarity=0.527 Sum_probs=104.5
Q ss_pred CCCceeeecccccCCCCCccccCCCCeEeecCCCCCHHHHHHHhhcCCChhHHHHHHHhcCCCHHHHHHHHHHhhcCCCh
Q psy938 3 VTGDGGLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIEDFKRQNEHKPEE 82 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~D~~v~~~l~~~t~l~~eei~~i~~~~~~~~~~ 82 (241)
..++|++|+|+|||+||+|||||+||+|||+++||||+++||||+|++|++|.+|+++||+++.++|+++++++..++++
T Consensus 212 ~~~~~~lt~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i~qki~~~~D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~ 291 (419)
T 2ts1_A 212 EARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK 291 (419)
T ss_dssp --CCEEEEECCCCCTTSCCTTCCSSCCCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCTTS
T ss_pred CCCeeecccccccCCCcccccCCCCCeEecCCCCCCHHHHHHHHhcCCchhHHHHHHHHHcCCHHHHHHHHHHHHccCCH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHhccCCcccCCCCChhhHhhhcCCCceeeeccCCCCcHHHHHHhcCCCCCH
Q psy938 83 RRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQDLDSLGSLNATDASRIFPGARIVELLMEPGMSMLELSLATKCFPRD 162 (241)
Q Consensus 83 ~~~Kk~LA~~i~~~vhG~~~a~~A~~~~~~lF~~~~~~~~~l~~~~l~~~~~~~p~~~~~~~~~~~l~~lLv~~gl~~Sk 162 (241)
+++|+.||++|++++||++++++|+++++++|+++ +..++++++++.+.++|.+++.. .+.++.++|+.+|+++|+
T Consensus 292 ~~~K~~LA~~v~~~~hg~~~~~~a~~~~~~lf~~~---~~~l~~~~~~~~~~~~p~~~~~~-~~~~~~~~l~~~gl~~S~ 367 (419)
T 2ts1_A 292 RAAQKTLAEEVTKLVHGEEALRQAIRISEALFSGD---IANLTAAEIEQGFKDVPSFVHEG-GDVPLVELLVSAGISPSK 367 (419)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhccc---ccccCHhHHHHHhccceEEEecC-CcccHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999999863 35677888998888889887742 246899999999999999
Q ss_pred HHHHHHHHhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEE
Q psy938 163 KEANLTISEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKS 214 (241)
Q Consensus 163 sEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~ 214 (241)
+||||+|+||||||||++|+|++..+... +++++++++||+|||+|++|++
T Consensus 368 ~earr~i~~ggv~in~~~v~d~~~~~~~~-~~~~~~~~~l~~GKk~~~~v~~ 418 (419)
T 2ts1_A 368 RQAREDIQNGAIYVNGERLQDVGAILTAE-HRLEGRFTVIRRGKKKYYLIRY 418 (419)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHhCCEEECCEEecCcccccChh-hccCCcEEEEEECCeeEEEEEE
Confidence 99999999999999999999999988764 7788899999999999999986
No 3
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=3e-52 Score=392.76 Aligned_cols=207 Identities=31% Similarity=0.530 Sum_probs=109.5
Q ss_pred CCCceeeecccccCCCCCccccCCCCeEeecCCCCCHHHHHHHhhcCCChhHHHHHHHhcCCCHHHHHHHHHHhhcCCCh
Q psy938 3 VTGDGGLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIEDFKRQNEHKPEE 82 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~D~~v~~~l~~~t~l~~eei~~i~~~~~~~~~~ 82 (241)
..+++++|+|+|||+||+|||||+||+|||++++|||+++||||+|++|++|.+|+++||+++.++|+++++++..++++
T Consensus 213 ~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i~~ki~~~~D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~ 292 (420)
T 1jil_A 213 QTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHL 292 (420)
T ss_dssp CCCCEEEEECCCBCTTSCBTTBCSSSBCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGG
T ss_pred CCCeeEeecccccCCccccccCCCCCeEecCCCCCCHHHHHHHHhcCCchhHHHHHHHHHcCCHHHHHHHHHHHhcCCCh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHhccCCcccCCCCChhhHhhhcCCCceeeeccCCCCcHHHHHHhcCCCCCH
Q psy938 83 RRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQDLDSLGSLNATDASRIFPGARIVELLMEPGMSMLELSLATKCFPRD 162 (241)
Q Consensus 83 ~~~Kk~LA~~i~~~vhG~~~a~~A~~~~~~lF~~~~~~~~~l~~~~l~~~~~~~p~~~~~~~~~~~l~~lLv~~gl~~Sk 162 (241)
+++|+.||++|++++||++++++|+++++++|+++ +..++++++++.+.++|.+++.. .++++.++|+.+|+++|+
T Consensus 293 ~~~K~~La~~v~~~~hg~~~~~~a~~~~~~~f~~~---~~~~~~~~~~~~~~~~p~~~i~~-~~i~l~~lL~~agl~~Sk 368 (420)
T 1jil_A 293 REAQKTLAEEVTKFIHGEDALNDAIRISQALFSGD---LKSLSAKELKDGFKDVPQVTLSN-DTTNIVEVLIETGISPSK 368 (420)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCC---cccCCHHHHHHHhccceEEEecc-CcccHHHHHHHcCCccCH
Confidence 99999999999999999999999999999999864 35688888888888899887742 246899999999999999
Q ss_pred HHHHHHHHhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEE
Q psy938 163 KEANLTISEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKS 214 (241)
Q Consensus 163 sEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~ 214 (241)
+||||+|++|||+|||++++|++..+... +++++++++||+|||+|++|+|
T Consensus 369 sEARRlI~~GgV~VNgekv~d~~~~l~~~-dl~~~~~~~l~~GKk~~~~v~~ 419 (420)
T 1jil_A 369 RQAREDVNNGAIYINGERQQDVNYALAPE-DKIDGEFTIIRRGKKKYFMVNY 419 (420)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHhCCEEECCEEecccccccCcc-cccCCcEEEEEECCeeEEEEEE
Confidence 99999999999999999999999988865 7888999999999999999986
No 4
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1e-41 Score=321.97 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=163.2
Q ss_pred CCCCceeeecccccCCCCC-ccccCCCCeEeecCCCCCHHHHHHHhhcCCChhHHHHHHHhcCCCHHHHHHHHHHhhcCC
Q psy938 2 EVTGDGGLTTPIIESESGE-KFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIEDFKRQNEHKP 80 (241)
Q Consensus 2 ~~~~~~~lt~pLL~g~dG~-KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~D~~v~~~l~~~t~l~~eei~~i~~~~~~~~ 80 (241)
+..+++++|+|+|||+||. |||||.+|+|||++ ||+++||||++++|+++.+|+++||+++.+||+++.+.
T Consensus 212 ~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d---sp~~i~~Ki~~~~d~~v~~~l~~ft~~~~eei~~~~~~----- 283 (432)
T 1h3f_A 212 GQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE---PPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKA----- 283 (432)
T ss_dssp TCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS---CHHHHHHHHHTSCGGGHHHHHHHHCCCCHHHHHHHHHH-----
T ss_pred CCCCceEeecccccCCCCccccCcCCCCeeCCCC---CHHHHHHHHhCCCccHHHHHHHHcCCCCHHHHHHHHhh-----
Confidence 3567899999999999995 99999999999999 99999999999999999999999999999999998865
Q ss_pred ChHHHHHHHHHHHHhhcc-----------------------------CHHHHHHHHHHHHHhccCCcccCCCCChhhHhh
Q psy938 81 EERRAQKKLAEDLTLLVH-----------------------------GEEGLKSAKLATQALYSQDLDSLGSLNATDASR 131 (241)
Q Consensus 81 ~~~~~Kk~LA~~i~~~vh-----------------------------G~~~a~~A~~~~~~lF~~~~~~~~~l~~~~l~~ 131 (241)
+++++|+.||++|++++| |+++|++|.++++.+ +.+ ++++
T Consensus 284 ~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~~~~~~g~~~a~~a~~~~~~~-~~~----------~~~~ 352 (432)
T 1h3f_A 284 GPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEV-AKG----------GIPE 352 (432)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTTCCTTCSCHHHHHHHHHHHHH-CC--------------C
T ss_pred ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHhhccccCHHHHHHHHHHHHHh-hcC----------CCCc
Confidence 789999999999999999 999999999999999 432 2222
Q ss_pred hcCCCceeeeccC----CCCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccc
Q psy938 132 IFPGARIVELLME----PGMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVS 207 (241)
Q Consensus 132 ~~~~~p~~~~~~~----~~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk 207 (241)
++|.+++... .+.++.++|+.+|+++|++||||+|+||||||||++|+|++..+..+ +.++||+|||
T Consensus 353 ---~~p~~~~~~~~~~~~~~~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~------~~~~l~~GKk 423 (432)
T 1h3f_A 353 ---EIPEVTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLS------RPRILQRGKD 423 (432)
T ss_dssp ---CSCEEEECGGGCBTTEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECS------SCEEEEETTT
T ss_pred ---cCceeEecccccccccCcHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCC------CcEEEEeCCe
Confidence 4565555321 14679999999999999999999999999999999999999887643 2379999999
Q ss_pred cEEEEEEc
Q psy938 208 ANIIAKSA 215 (241)
Q Consensus 208 ~~~~i~~~ 215 (241)
+|++|++.
T Consensus 424 ~~~~v~~~ 431 (432)
T 1h3f_A 424 RFVRVRLS 431 (432)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99999875
No 5
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=99.96 E-value=4.9e-30 Score=239.61 Aligned_cols=114 Identities=39% Similarity=0.661 Sum_probs=110.4
Q ss_pred CCceeeecccccCCCCCccccCCCCeEeecCCCCCHHHHHHHhhcCCChhHHHHHHHhcCCCHHHHHHHHHHhhcCCChH
Q psy938 4 TGDGGLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIEDFKRQNEHKPEER 83 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~D~~v~~~l~~~t~l~~eei~~i~~~~~~~~~~~ 83 (241)
.+++++|+|+|||+||+|||||+||+|||++++|||+++||||++++|++|.+|+++||+++.++|++++++|..+++++
T Consensus 276 ~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i~qki~~~~D~~v~~~l~~ft~l~~~ei~~l~~~~~~g~~~~ 355 (392)
T 1y42_X 276 DECVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQTSVFDFYGYFVRRSDQEVENLLKLFTFMPISEITKTMEEHIKDPSKR 355 (392)
T ss_dssp GSCEEEECCCCBCTTCCBTTBCSSSBCBSSTTTSCHHHHHHHHHTCCTTTHHHHHHHHCCCCHHHHHHHHHHHHHCGGGC
T ss_pred CCccccccccCcCCchhhccCCCCCeeeccCCCCCHHHHHHHHHcCCchhHHHHHHHHHhCChhHHHHHHHHHhcCCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHhccCC
Q psy938 84 RAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQD 117 (241)
Q Consensus 84 ~~Kk~LA~~i~~~vhG~~~a~~A~~~~~~lF~~~ 117 (241)
++|+.||++|++++||.+++++|.++++++|+++
T Consensus 356 ~~K~~LA~~v~~~lhg~~~~~~a~~~~~~~f~~~ 389 (392)
T 1y42_X 356 VAQHTLAREVVTLVHGKQEASAAEDQHRMMYTGQ 389 (392)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHTSSCCC-
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999864
No 6
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=99.96 E-value=9.2e-30 Score=235.15 Aligned_cols=115 Identities=47% Similarity=0.736 Sum_probs=96.2
Q ss_pred CCCceeeecccccCCCCCccccCCCCeEeecCCCCCHHHHHHHhhcCCChhHHHHHHHhcCCCHHHHHHHHHHhhcCCCh
Q psy938 3 VTGDGGLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIEDFKRQNEHKPEE 82 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~D~~v~~~l~~~t~l~~eei~~i~~~~~~~~~~ 82 (241)
..+++++|.|+|||+||+|||||.||+|||++++|||+++||||++++|++|.+|+++||+++.++|+++++++..++++
T Consensus 236 ~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i~~ki~~~~D~~v~~~l~~~t~~~~~~i~~l~~~~~~g~~~ 315 (356)
T 2pid_A 236 GEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPFELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPER 315 (356)
T ss_dssp SCCCEEEEECCCC-------------CCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGG
T ss_pred CCCccccccccccCCCcccccCCCCCeeeccCCCCCHHHHHHHHHcCCchhHHHHHHHHHcCCchHHHHHHHHHhcCCCH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHhccCC
Q psy938 83 RRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQD 117 (241)
Q Consensus 83 ~~~Kk~LA~~i~~~vhG~~~a~~A~~~~~~lF~~~ 117 (241)
+++|+.||++|++++||.+++++|++++++||+++
T Consensus 316 ~~~K~~La~~v~~~l~g~~~~~~a~~~~~~lf~~~ 350 (356)
T 2pid_A 316 RGPQKRLAAEVTKLVHGREGLDSAKRCTQALYHRS 350 (356)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999864
No 7
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=99.93 E-value=1.7e-26 Score=210.63 Aligned_cols=104 Identities=44% Similarity=0.759 Sum_probs=100.1
Q ss_pred CCceeeecccccCCCCCccccCCCCeEeecCCCCCHHHHHHHhhcCCChhHHHHHHHhcCCCHHHHHHHHHHhhcCCChH
Q psy938 4 TGDGGLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLAAIEDFKRQNEHKPEER 83 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~D~~v~~~l~~~t~l~~eei~~i~~~~~~~~~~~ 83 (241)
.+++++|+|+|||+||+|||||.+|+|||++++|||+++||||++++|++|.+|+++||+++.+++++++++|..+++++
T Consensus 218 ~~~~~l~~pll~gldG~KMSKS~~n~I~L~d~~tsp~~~~~ki~~~~d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~ 297 (322)
T 2yxn_A 218 NQVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAP 297 (322)
T ss_dssp CCCEEEECCCCBCTTSCBTTEETTEECBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCC
T ss_pred CCceeeccCccCCCCcccccCCCCCeeeccCCCCCHHHHHHHHhCCCcccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998777999
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHH
Q psy938 84 RAQKKLAEDLTLLVHGEEGLKSAK 107 (241)
Q Consensus 84 ~~Kk~LA~~i~~~vhG~~~a~~A~ 107 (241)
++|+.||++|++++||.+++++|+
T Consensus 298 ~~K~~La~~i~~~l~~~~~~~~a~ 321 (322)
T 2yxn_A 298 RAQYVLAEQVTRLVHGEEGLQAAK 321 (322)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhh
Confidence 999999999999999999998875
No 8
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.80 E-value=1.7e-20 Score=174.08 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=93.8
Q ss_pred CCCceeeecccccCCCCCccccCCCC-eEeecCCCCCHHHHHHHhhc-------CCChhHHHHHHH--------hcC---
Q psy938 3 VTGDGGLTTPIIESESGEKFGKSARN-AIWLDSKLSSSFELYQYLIR-------TKDSEVYDLLKL--------FSF--- 63 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG~KmsKS~gn-~I~L~~~~Tsp~~~yq~~~~-------~~D~~v~~~l~~--------~t~--- 63 (241)
..+++++++|+|+|+||+|||||.+| +|||++ +|+++||||++ ++|++|.+|+++ ||+
T Consensus 204 ~~~p~~l~~pll~gldG~KMSKS~~ns~I~L~d---~p~~i~kKi~~A~td~~~~~d~~v~~~lk~~l~~~~~~f~~er~ 280 (372)
T 1n3l_A 204 YSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLD---RKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRD 280 (372)
T ss_dssp CCCCEEEEECCCCCSSCC-------CCSCBTTC---CHHHHHHHHHTCCCCTTCCSSCHHHHHHHHTTGGGTTCEEECCC
T ss_pred CCCCEEEecCccCCCCcccccCCCCCCeEeccC---CHHHHHHHHHHccCCCCCCCcccHHHHHHHhhhhhhcceeeccc
Confidence 35689999999999999999999999 899999 99999999988 789999999998 664
Q ss_pred ------CCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhccCC
Q psy938 64 ------DSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQD 117 (241)
Q Consensus 64 ------l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a~~A~~~~~~lF~~~ 117 (241)
++.++++++++++..+ ++++++|+.||++|++++||..+..+ ...++.+|++.
T Consensus 281 ~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~-~~~~~~lf~~~ 340 (372)
T 1n3l_A 281 EKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN-TPALKKLASAA 340 (372)
T ss_dssp GGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc-CHHHHHHHhcc
Confidence 5667899999999876 89999999999999999999999888 88899999853
No 9
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=3.5e-19 Score=163.32 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=86.1
Q ss_pred Cceeeec--ccccCCCC-CccccCCCCeEeecCCCCCHHHHHHHhhcCCCh---------------hHHHHHHHhcCCCH
Q psy938 5 GDGGLTT--PIIESESG-EKFGKSARNAIWLDSKLSSSFELYQYLIRTKDS---------------EVYDLLKLFSFDSL 66 (241)
Q Consensus 5 ~~~~lt~--pLL~g~dG-~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~D~---------------~v~~~l~~~t~l~~ 66 (241)
++..+|. |+|||+|| +|||||.+|+|||++ +|+++||||+++.|+ ++.+|+++||+ .
T Consensus 176 P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d---~p~~i~~Ki~~a~td~~~~~~~~~~~p~~~~v~~~~~~~t~--~ 250 (337)
T 2el7_A 176 PQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE---PEESIWQKIQHLPDDPQRIRLSDPGDPERTILFTYLSYFAP--K 250 (337)
T ss_dssp CEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS---CHHHHHHHHHTCCCCC-------------CHHHHHHHHHSC--H
T ss_pred CeeecccccccccCCCCccccCCCCCCeeeCcC---CHHHHHHHHHhCCCCCccccccCCCCCchhhHHHHHHHcCC--h
Confidence 4555766 99999999 999999999999999 899999999999665 79999999985 3
Q ss_pred HHHHHHHHHhhc-CCChHHHHHHHHHHHHhhccCHHHHHHHH
Q psy938 67 AAIEDFKRQNEH-KPEERRAQKKLAEDLTLLVHGEEGLKSAK 107 (241)
Q Consensus 67 eei~~i~~~~~~-~~~~~~~Kk~LA~~i~~~vhG~~~a~~A~ 107 (241)
++++++++++.. +++++++|+.||++|++++||..+..+..
T Consensus 251 ~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~ 292 (337)
T 2el7_A 251 DLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEAL 292 (337)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 699999999987 58999999999999999999987765443
No 10
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.4e-19 Score=164.55 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=92.9
Q ss_pred CCCceeeecccccCCC-CCccccCCCCe-EeecCCCCCHHHHHHHhhcC-------CChhHHHHHHH-------------
Q psy938 3 VTGDGGLTTPIIESES-GEKFGKSARNA-IWLDSKLSSSFELYQYLIRT-------KDSEVYDLLKL------------- 60 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~d-G~KmsKS~gn~-I~L~~~~Tsp~~~yq~~~~~-------~D~~v~~~l~~------------- 60 (241)
...+++++.|+|+|+| |+|||||.+|+ |||++ +|+++++|++++ +|+++..|+++
T Consensus 208 ~~~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D---~p~~i~kKI~ka~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g 284 (394)
T 2dlc_X 208 YKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLLE---EPKQVKKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTN 284 (394)
T ss_dssp CCCCEEEEECCCCCCC----------CCSCBTTC---CHHHHHHHHHHSCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTT
T ss_pred CCCCEEEecccccCCCCCCcCCCCCCCCEEeccC---CHHHHHHHHHHhcCCCCCCCcchHHHHHHhhhcchhhhcccCC
Confidence 3568999999999999 99999999996 99999 999999999986 68899999988
Q ss_pred ------------hcCCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhccCC
Q psy938 61 ------------FSFDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALYSQD 117 (241)
Q Consensus 61 ------------~t~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a~~A~~~~~~lF~~~ 117 (241)
|++++.++++++++++..+ ++++++|+.||++|++++||..+..++...++.+|..+
T Consensus 285 ~~~~~i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~~~~~~~~~~ 354 (394)
T 2dlc_X 285 HFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKEFQEASEKG 354 (394)
T ss_dssp CCCEEECCCGGGSCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CceEEEeccccccCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCHHHHHHHhcc
Confidence 7888888999999999877 89999999999999999999999888877788888754
No 11
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.75 E-value=3.6e-18 Score=156.74 Aligned_cols=91 Identities=20% Similarity=0.114 Sum_probs=82.3
Q ss_pred eeecccccCCCCCccccCCCCeEeecCCCCCHHHHHHHhhcCCCh---------------hHHHHHHHhcCCCHHHHHHH
Q psy938 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDS---------------EVYDLLKLFSFDSLAAIEDF 72 (241)
Q Consensus 8 ~lt~pLL~g~dG~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~D~---------------~v~~~l~~~t~l~~eei~~i 72 (241)
..++|+|||+||+|||||.+|+|||++ ||+++||||+++.++ ++.+|+++||+ +.++++++
T Consensus 192 ~~~~~~l~gldG~KMSKS~~n~I~L~d---sp~~i~~Ki~~a~td~~~~~~~~~~~p~~~~v~~~~~~f~~-~~~~ieel 267 (340)
T 2g36_A 192 LSRVPKLPGTDGRKMSKSYGNIINLEI---SEKELEQTILRMMTDPARVRRSDPGNPENCPVWKYHQAFDI-SEEESKWV 267 (340)
T ss_dssp ECCSCCCCCTTSSCCCGGGTCCCBTTC---CHHHHHHHHHTCCCCTTCSSTTSCCCGGGCHHHHHHHHTTC-CHHHHHHH
T ss_pred hccccccCCCCccccCCCCCCeEeeeC---CHHHHHHHHHhCCCCcccccccCCCCCchhHHHHHHHHHCC-CHhHHHHH
Confidence 445899999999999999999999999 999999999999654 89999999985 67888999
Q ss_pred HHHhhcC-CChHHHHHHHHHHHHhhccCHHH
Q psy938 73 KRQNEHK-PEERRAQKKLAEDLTLLVHGEEG 102 (241)
Q Consensus 73 ~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~ 102 (241)
++++..+ .+++++|+.||++|++++|+-..
T Consensus 268 ~~~~~~g~~~~~~~K~~La~~i~~~l~pire 298 (340)
T 2g36_A 268 WEGCTTASIGCVDCKKLLLKNMKRKLAPIWE 298 (340)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 69999999999999999998554
No 12
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=99.73 E-value=3.1e-18 Score=156.14 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=82.2
Q ss_pred CceeeecccccCCCCCccccCCCCeEeecCCCCCHHHHHHHhhcCC-------------ChhHHHHHHHhcCCCHHHHHH
Q psy938 5 GDGGLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTK-------------DSEVYDLLKLFSFDSLAAIED 71 (241)
Q Consensus 5 ~~~~lt~pLL~g~dG~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~~-------------D~~v~~~l~~~t~l~~eei~~ 71 (241)
+.+++|+|+|||+||+|||||.+|+|||++ ||+++++||+++. ++.|.+|+++|+ +.+++++
T Consensus 176 ~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d---~p~~i~~KI~~a~td~~~~~~~~~~~~~~v~~~~~~~~--~~~~i~~ 250 (322)
T 3tzl_A 176 ARVNEEVAVVVGTDGAKMSKSYQNTIDIFS---SEKTLKKQISSIVTDSTALEDPKDHENCNIFKIAKLFL--DESGQKE 250 (322)
T ss_dssp EECCCSSCCCBCTTSSBCCGGGTCCCBSSC---CHHHHHHHHHTCCCCCCCTTSCCCGGGCHHHHHHGGGC--CHHHHHH
T ss_pred hhhccccccccCCCCCcCCCCCCCceecCC---CHHHHHHHHHhccCCCccccCCCCCcchhHHHHHHHhC--ChhHHHH
Confidence 345678999999999999999999999999 9999999999862 267888888886 7889999
Q ss_pred HHHHhhc-CCChHHHHHHHHHHHHhhccCHHH
Q psy938 72 FKRQNEH-KPEERRAQKKLAEDLTLLVHGEEG 102 (241)
Q Consensus 72 i~~~~~~-~~~~~~~Kk~LA~~i~~~vhG~~~ 102 (241)
+++++.. +++++++|+.||++|++.+|+-..
T Consensus 251 l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~ 282 (322)
T 3tzl_A 251 LQIRYEKGGEGYGHFKIYLNELVNAYFKEARE 282 (322)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 9999876 489999999999999999998654
No 13
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.71 E-value=2.1e-17 Score=152.29 Aligned_cols=95 Identities=22% Similarity=0.264 Sum_probs=83.0
Q ss_pred Cceeee-cccccCCCCC-ccccCCCCeEeecCCCCCHHHHHHHhhcC---------------CChhHHHHHHHhcCCCHH
Q psy938 5 GDGGLT-TPIIESESGE-KFGKSARNAIWLDSKLSSSFELYQYLIRT---------------KDSEVYDLLKLFSFDSLA 67 (241)
Q Consensus 5 ~~~~lt-~pLL~g~dG~-KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~---------------~D~~v~~~l~~~t~l~~e 67 (241)
++..++ +|+|+|+||+ |||||.+|+|||++ +|+++||||+++ +++.+..|+++|++ +.+
T Consensus 197 P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d---~p~~i~~Ki~~a~td~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 272 (351)
T 1yi8_B 197 PQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD---SADEVARKVMGMYTDPGHLRASDPGRVEGNPVFTFLDAFDP-DPA 272 (351)
T ss_dssp CEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC---CHHHHHHHHHTCCCCTTCCSTTSCCCCTTCTTHHHHHHHCS-CHH
T ss_pred CeeeeecCccccCCCCccccCCCCCCeecCCC---CHHHHHHHHHhcCCCcccccccCCCCCccchHHHHHHHHcC-Chh
Confidence 334464 8999999996 99999999999999 899999999975 34589999999986 788
Q ss_pred HHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHH
Q psy938 68 AIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGL 103 (241)
Q Consensus 68 ei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a 103 (241)
+++++++++..+ .+++++|+.||++|++.+||-..-
T Consensus 273 ~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~ 309 (351)
T 1yi8_B 273 RVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTR 309 (351)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHH
Confidence 889999999875 799999999999999999996653
No 14
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.71 E-value=1.4e-17 Score=154.02 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=86.2
Q ss_pred CCCceeeecccccCCC-----------------CCccccC-CCCeEeecCCCCCHHHHHHHhhcC-------CChhHHHH
Q psy938 3 VTGDGGLTTPIIESES-----------------GEKFGKS-ARNAIWLDSKLSSSFELYQYLIRT-------KDSEVYDL 57 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~d-----------------G~KmsKS-~gn~I~L~~~~Tsp~~~yq~~~~~-------~D~~v~~~ 57 (241)
..+++++++|+|+|++ |+||||| .+|+|||++ +|+++||||+++ +|++|..|
T Consensus 203 ~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d---~p~~i~~Ki~~a~td~~~~~~~~v~~~ 279 (364)
T 2cya_A 203 RKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD---SDDDIRRKIRKAYCPAKQVQGNPVLEI 279 (364)
T ss_dssp CCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC---CHHHHHHHHHTSCCCTTCCTTCHHHHH
T ss_pred CCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccC---CHHHHHHHHHhCcCCCCCCCCCcHHHH
Confidence 3467899999999999 6899999 689999999 999999999886 56899999
Q ss_pred HHHhcC------------------CCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHH
Q psy938 58 LKLFSF------------------DSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGL 103 (241)
Q Consensus 58 l~~~t~------------------l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a 103 (241)
+++|+| ++.++++++++.+..+ ++++++|+.||++|++++|+-.+.
T Consensus 280 ~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~ 344 (364)
T 2cya_A 280 ARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGA 344 (364)
T ss_dssp HHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 3445899999999876 899999999999999999997654
No 15
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=99.70 E-value=9.8e-18 Score=139.02 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=66.8
Q ss_pred hcCCCceeeeccCC----CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecC--------CCC-----------cc
Q psy938 132 IFPGARIVELLMEP----GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQN--------PQE-----------VL 188 (241)
Q Consensus 132 ~~~~~p~~~~~~~~----~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d--------~~~-----------~l 188 (241)
.+..+|.+++.... +.+++++|+.+||++|++||||+|++|||||||+++.+ +.. .+
T Consensus 31 ~~~~~Pt~ei~lp~s~l~g~~ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~~~~~~~tpi~d~~~~i 110 (164)
T 2ktl_A 31 NFANMPSARVTLPKSLVYDKTFSKVLWSAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASK 110 (164)
T ss_dssp TTTSTTCEEEECCGGGGGSCSHHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSSCSSSCCCCCCCCSHHH
T ss_pred ccccCCceeeccchhhhcCCcHHHHHHHhCcccCHHHHHHHHHhCCEEECCEeccccccccccccccccccccccccccc
Confidence 35667877664211 56899999999999999999999999999999988855 221 12
Q ss_pred CCCCcccCCCeEEEEeccccEEEEEEcc
Q psy938 189 SPSAHILPNSLTLLRVEVSANIIAKSAN 216 (241)
Q Consensus 189 ~~~~~~~~~~~~llr~GKk~~~~i~~~~ 216 (241)
. ..++++++|++||+|||+|++|++.+
T Consensus 111 t-~~dli~g~~liLRkGKK~~~lI~~~~ 137 (164)
T 2ktl_A 111 T-QEFIIDGDLLILKLGKWKMKLVSIVS 137 (164)
T ss_dssp H-HHHTTCSSCEEEEESSSCEEEEECCC
T ss_pred C-HHHhcCCcEEEEEcCCeeEEEEEEec
Confidence 2 23578999999999999999999954
No 16
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=99.70 E-value=2.4e-17 Score=153.05 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=87.2
Q ss_pred CceeeecccccCCCC------------------CccccCC-CCeEeecCCCCCHHHHHHHhhc-------CCChhHHHHH
Q psy938 5 GDGGLTTPIIESESG------------------EKFGKSA-RNAIWLDSKLSSSFELYQYLIR-------TKDSEVYDLL 58 (241)
Q Consensus 5 ~~~~lt~pLL~g~dG------------------~KmsKS~-gn~I~L~~~~Tsp~~~yq~~~~-------~~D~~v~~~l 58 (241)
+++++++|+|||++| +|||||. +|+|||++ +|+++||||++ ++|+++..|+
T Consensus 217 ~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d---~p~~i~~KI~~A~t~~~~~~~~~v~~~~ 293 (375)
T 2cyc_A 217 KPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHD---SPEEIRQKLRKAFCPAREVRYNPVLDWV 293 (375)
T ss_dssp CCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTC---CHHHHHHHHHHSCCCTTCCSSCHHHHHH
T ss_pred ccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCC---CHHHHHHHHHHhcCCCCCCCCChHHHHH
Confidence 678899999999999 7999999 78999999 99999999988 4688999999
Q ss_pred HHhcCCC------------------HHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHH
Q psy938 59 KLFSFDS------------------LAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGL 103 (241)
Q Consensus 59 ~~~t~l~------------------~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a 103 (241)
++|+|.+ .++++++++++..+ ++++++|+.||++|++++|+-.+.
T Consensus 294 ~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~ 357 (375)
T 2cyc_A 294 EYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRY 357 (375)
T ss_dssp HHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999875 56799999999877 899999999999999999997664
No 17
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=99.67 E-value=5.7e-17 Score=153.14 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=85.9
Q ss_pred CCceeeecccccCCCC--CccccCCCC-eEeecCCCCCHHHHHHHhhc-C-CC-----------------hhHHHHHHHh
Q psy938 4 TGDGGLTTPIIESESG--EKFGKSARN-AIWLDSKLSSSFELYQYLIR-T-KD-----------------SEVYDLLKLF 61 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG--~KmsKS~gn-~I~L~~~~Tsp~~~yq~~~~-~-~D-----------------~~v~~~l~~~ 61 (241)
..+.++++|+|||+|| +|||||.+| +|||++ +|.++++|+++ + +| +.|.+|+++|
T Consensus 283 ~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D---~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~f 359 (437)
T 1r6u_A 283 PKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD---TAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF 359 (437)
T ss_dssp CCCEEEEECCCEETTEEEEECCTTSSSSCCBTTC---CHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHH
T ss_pred CCceEeecccccCCCCCccccCCCCCCCeeeccC---CHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHH
Confidence 3456799999999999 799999999 899999 99999999999 4 22 3689999999
Q ss_pred cCCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHH
Q psy938 62 SFDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGL 103 (241)
Q Consensus 62 t~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a 103 (241)
| ++.++|+++++++..+ ++++++|+.||++|++++||-...
T Consensus 360 t-~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer 401 (437)
T 1r6u_A 360 L-EDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQAR 401 (437)
T ss_dssp C-CCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 8999999999999887 899999999999999999987554
No 18
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=99.66 E-value=1.3e-16 Score=150.57 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=80.0
Q ss_pred CceeeecccccCCCC--CccccCCCC-eEeecCCCCCHHHHHHHhhc-C-C-----------------ChhHHHHHHHhc
Q psy938 5 GDGGLTTPIIESESG--EKFGKSARN-AIWLDSKLSSSFELYQYLIR-T-K-----------------DSEVYDLLKLFS 62 (241)
Q Consensus 5 ~~~~lt~pLL~g~dG--~KmsKS~gn-~I~L~~~~Tsp~~~yq~~~~-~-~-----------------D~~v~~~l~~~t 62 (241)
.++++++|+|||+|| +|||||.+| +|||++ +|.++++|+++ + . .+.|.+|+++|+
T Consensus 277 ~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d---~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~ 353 (432)
T 2ip1_A 277 KPALLHSRFFPALQGSTTKMSASDDTTAIFMTD---TPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFK 353 (432)
T ss_dssp CCEEEEECCCCCTTC--------CGGGCCBTTC---CHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHC
T ss_pred CceeeccccccCCCCCccccCCCCCCCeEeccC---CHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHC
Confidence 456799999999999 899999999 899999 99999999999 2 1 146899999995
Q ss_pred CCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHHH
Q psy938 63 FDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGLK 104 (241)
Q Consensus 63 ~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a~ 104 (241)
++.++++++++++..+ ++++++|+.||++|++++||-....
T Consensus 354 -~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~ 395 (432)
T 2ip1_A 354 -DDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERR 395 (432)
T ss_dssp -CCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999887 8999999999999999999977653
No 19
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=99.66 E-value=9.9e-17 Score=145.62 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCceeeecccccCCCC-CccccCCCCeEeecCCCCCHHHHHHHhhcC-------CChhHHHHHHHhc-------------
Q psy938 4 TGDGGLTTPIIESESG-EKFGKSARNAIWLDSKLSSSFELYQYLIRT-------KDSEVYDLLKLFS------------- 62 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG-~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~-------~D~~v~~~l~~~t------------- 62 (241)
.+++++++|+|||+|| +|||||.+|+|||++ +|+++++|++++ +++.+..|+++|.
T Consensus 186 ~~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d---~~~~i~~KI~~a~td~~~~~~~~~~~~~~~~~~~~~~i~r~~k~g 262 (314)
T 2zp1_A 186 KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD---SPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFG 262 (314)
T ss_dssp SCCEEEEECCCBCTTSSSBCCTTTTCSCBTTC---CHHHHHHHHHHSCCCTTCCTTCHHHHHHHHHCCSSEEECCCGGGT
T ss_pred CCcEEeeccccccCCcccccCCCCcceecCCC---CHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHhcCCcceeehhhcc
Confidence 4678899999999999 799999999999999 999999999998 2478899999985
Q ss_pred -CCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHH
Q psy938 63 -FDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGL 103 (241)
Q Consensus 63 -~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a 103 (241)
.++.++++++++.+..+ ++++++|+.||++|++.+|+..+.
T Consensus 263 ~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~ 305 (314)
T 2zp1_A 263 GDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKR 305 (314)
T ss_dssp CCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445677777777765 799999999999999999987654
No 20
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=99.65 E-value=1.4e-16 Score=151.94 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=84.8
Q ss_pred CCceeeecccccCCCC--CccccCCCC-eEeecCCCCCHHHHHHHhhc-C-----------------CC-hhHHHHHHHh
Q psy938 4 TGDGGLTTPIIESESG--EKFGKSARN-AIWLDSKLSSSFELYQYLIR-T-----------------KD-SEVYDLLKLF 61 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG--~KmsKS~gn-~I~L~~~~Tsp~~~yq~~~~-~-----------------~D-~~v~~~l~~~ 61 (241)
..++++++|+|||+|| +|||||.+| +|||++ +|.++++|+++ + +| +.|.+|+++|
T Consensus 330 ~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d---~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f 406 (477)
T 1r6t_A 330 PKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD---TAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF 406 (477)
T ss_dssp CCCEEEEECCCEETTEEEEECCTTSTTCCCBTTC---CHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHH
T ss_pred CCceeeecccccCCCCCccccCCCCCCCceeecC---CHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHH
Confidence 3466799999999999 799999999 899999 99999999999 2 12 4689999999
Q ss_pred cCCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHH
Q psy938 62 SFDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEG 102 (241)
Q Consensus 62 t~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~ 102 (241)
| ++.++|+++++++..+ ++++++|+.||++|++++|+-..
T Consensus 407 t-~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pire 447 (477)
T 1r6t_A 407 L-EDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQA 447 (477)
T ss_dssp C-CCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 8999999999999887 89999999999999999997543
No 21
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.63 E-value=3.6e-16 Score=142.26 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=84.8
Q ss_pred CCCceeeecccccCCCCCccccCCCCeEeecCCCCCHHHHHHHhhcC-------CChhHHHHHHHhc-------------
Q psy938 3 VTGDGGLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRT-------KDSEVYDLLKLFS------------- 62 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~-------~D~~v~~~l~~~t------------- 62 (241)
..++++++.|+|+++||+|||||.||+|||++ +|.++++|++++ +++.+..|+++|.
T Consensus 196 ~~~p~~l~~pll~~l~G~KMSKS~~n~I~l~d---~p~~i~~Ki~~a~td~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~ 272 (323)
T 2cyb_A 196 YSSPVCLHTPILVGLDGQKMSSSKGNYISVRD---PPEEVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDA 272 (323)
T ss_dssp CCCCEEEEECCCBCTTSSBCCTTTTCSCBTTC---CHHHHHHHHHTSCCCTTCCTTCHHHHHHHHTHHHHHSCEEECCCG
T ss_pred CCCceEEecCcccCCCCCcccCCcCceeCCCC---CHHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccCceeEechh
Confidence 34688999999999999999999999999999 999999999998 4688999999985
Q ss_pred ----CCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHH
Q psy938 63 ----FDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEE 101 (241)
Q Consensus 63 ----~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~ 101 (241)
.++.++++++++++..| .+++++|+.||+.|++.++.-.
T Consensus 273 ~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir 316 (323)
T 2cyb_A 273 KFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDAR 316 (323)
T ss_dssp GGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33556888899998876 7999999999999999987643
No 22
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=99.59 E-value=1.9e-15 Score=140.71 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=83.6
Q ss_pred CCceeeecccccCCCC-CccccC-CCCeEeecCCCCCHHHHHHHhhcC-------CC------------hhHHHHHHHhc
Q psy938 4 TGDGGLTTPIIESESG-EKFGKS-ARNAIWLDSKLSSSFELYQYLIRT-------KD------------SEVYDLLKLFS 62 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG-~KmsKS-~gn~I~L~~~~Tsp~~~yq~~~~~-------~D------------~~v~~~l~~~t 62 (241)
.+++.+++|+|+|+|| +||||| .+|+|||++ +|+++++|++++ +| +.+.+|+++|+
T Consensus 251 ~~p~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D---~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~ 327 (386)
T 3hzr_A 251 IQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSD---NAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFS 327 (386)
T ss_dssp CCCEEEEECCCCCTTCTTCCCCCCTTTSCBTTC---CHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHC
T ss_pred CCceEeecCeeeCCCCCCccCcCCCCCeeecCC---CHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHc
Confidence 4568889999999999 599999 799999999 999999999995 22 56889999998
Q ss_pred CCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHH
Q psy938 63 FDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEG 102 (241)
Q Consensus 63 ~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~ 102 (241)
.+.++++++.+++..+ .+++++|+.||++|++.+++-..
T Consensus 328 -~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pire 367 (386)
T 3hzr_A 328 -SDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDA 367 (386)
T ss_dssp -SCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999765 69999999999999999987554
No 23
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.58 E-value=1e-15 Score=139.82 Aligned_cols=87 Identities=22% Similarity=0.164 Sum_probs=79.1
Q ss_pred cccccCCCC--CccccCCCC-e--EeecCCCCCHHHHHHHhhcC-C------------ChhHHHHHHHhcCCCHHHHHHH
Q psy938 11 TPIIESESG--EKFGKSARN-A--IWLDSKLSSSFELYQYLIRT-K------------DSEVYDLLKLFSFDSLAAIEDF 72 (241)
Q Consensus 11 ~pLL~g~dG--~KmsKS~gn-~--I~L~~~~Tsp~~~yq~~~~~-~------------D~~v~~~l~~~t~l~~eei~~i 72 (241)
+|+|+|+|| +|||||.+| + |||++ +|+++++|++++ + |++|.+++.+|++++.++++++
T Consensus 180 ~~~l~gl~G~~~KMSKS~~n~~~~I~L~d---~~~~i~~KI~~a~td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~el 256 (328)
T 1i6k_A 180 GARIMSLVDPTKKMSKSDPNPKAYITLLD---DAKTIEKKIKSAVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEEL 256 (328)
T ss_dssp SSSCBCSSCTTSBCCTTCSCGGGCCBTTC---CHHHHHHHHHHCCCCSSCCCCCBTTTBHHHHHHHHHHHHHHCCCHHHH
T ss_pred cccccCCCCCccCCCCCCCCcCceeeecC---CHHHHHHHHHhcCCCCccccccCCCCCcchhhHHHHHHHCCchhHHHH
Confidence 789999999 899999999 7 99999 999999999997 1 4778899999998888899999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCHH
Q psy938 73 KRQNEHKPEERRAQKKLAEDLTLLVHGEE 101 (241)
Q Consensus 73 ~~~~~~~~~~~~~Kk~LA~~i~~~vhG~~ 101 (241)
++++. +++++++|+.||++|++++|.-.
T Consensus 257 ~~~~~-g~~~~~~K~~La~~i~~~l~pir 284 (328)
T 1i6k_A 257 ERQYE-GKGYGVFKADLAQVVIETLRPIQ 284 (328)
T ss_dssp HHHTT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHhHHHH
Confidence 99998 89999999999999999998644
No 24
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=99.56 E-value=6.5e-15 Score=137.41 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=83.1
Q ss_pred CCceeeecccccCCCC--CccccCCCC-eEeecCCCCCHHHHHHHhhc--CCCh-----------------hHHHHHHHh
Q psy938 4 TGDGGLTTPIIESESG--EKFGKSARN-AIWLDSKLSSSFELYQYLIR--TKDS-----------------EVYDLLKLF 61 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG--~KmsKS~gn-~I~L~~~~Tsp~~~yq~~~~--~~D~-----------------~v~~~l~~~ 61 (241)
..+.++++|+|+|+|| +|||||.+| +|||++ +|.++++|+++ .+|+ .+.+|+.+|
T Consensus 234 ~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D---~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~ 310 (392)
T 3jxe_A 234 YKTAALHSKFVPSLTSLSGKMSASKPETAIYLTD---SPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIF 310 (392)
T ss_dssp CCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTC---CHHHHHHHHHTCC--------------------CHHHHHHHHT
T ss_pred CCCeeeecccccCCCCCccccccCCCCCeeeCCC---CHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHH
Confidence 4678899999999999 599999998 999999 99999999999 4554 256899999
Q ss_pred cCCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHH
Q psy938 62 SFDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEG 102 (241)
Q Consensus 62 t~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~ 102 (241)
+..+.++++++.+++..| .+++++|+.||+.|++.++.-..
T Consensus 311 ~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pire 352 (392)
T 3jxe_A 311 FEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQR 352 (392)
T ss_dssp TCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999876 69999999999999999987554
No 25
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=99.56 E-value=5.1e-15 Score=138.22 Aligned_cols=97 Identities=11% Similarity=0.231 Sum_probs=73.5
Q ss_pred CCCceeeecccccCCCC--CccccCCCC-eEeecCCCCCHHHHHHHhhc-C-CC-----------------hhHHHHHHH
Q psy938 3 VTGDGGLTTPIIESESG--EKFGKSARN-AIWLDSKLSSSFELYQYLIR-T-KD-----------------SEVYDLLKL 60 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG--~KmsKS~gn-~I~L~~~~Tsp~~~yq~~~~-~-~D-----------------~~v~~~l~~ 60 (241)
..+++++++|+|||+|| +|||||.+| +|||++ +|.++++|+++ + +| +.+..|+.+
T Consensus 246 ~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D---~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~ 322 (393)
T 3hv0_A 246 YLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVND---NEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRF 322 (393)
T ss_dssp CCCCEEEEECCCCC-------------CCCCBTTC---CHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHH
T ss_pred CCCceeeccCcccCCCCCCcCCCCCCCCCeEeccC---CHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHH
Confidence 45788999999999999 799999987 999999 99999999999 4 22 357788888
Q ss_pred hcCCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHH
Q psy938 61 FSFDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGL 103 (241)
Q Consensus 61 ~t~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a 103 (241)
|+ .+.++++++.+++..| .+++++|+.||+.|++.+++-...
T Consensus 323 ~~-~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer 365 (393)
T 3hv0_A 323 LM-EDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKN 365 (393)
T ss_dssp HC-CCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hc-CChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 4788999999999866 699999999999999999986654
No 26
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=99.55 E-value=3.1e-15 Score=139.75 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=64.4
Q ss_pred CCCceeeecccccCCCC--CccccCCCCeEeecCCCCCHHHHHHHhhcC--CC-----------------hhHHHHHHHh
Q psy938 3 VTGDGGLTTPIIESESG--EKFGKSARNAIWLDSKLSSSFELYQYLIRT--KD-----------------SEVYDLLKLF 61 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG--~KmsKS~gn~I~L~~~~Tsp~~~yq~~~~~--~D-----------------~~v~~~l~~~ 61 (241)
..+++++++|+|||+|| +|||||.+|+|||++ +|+++++|++++ +| +.+..|+.+|
T Consensus 250 ~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D---~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~ 326 (395)
T 3i05_A 250 YLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTD---TEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFF 326 (395)
T ss_dssp CCCCEEEEECCCCCC-------------CCBTTC---CHHHHHHHHC----------------------CCHHHHHHHHH
T ss_pred CCCceeeccccccCCCCCcccCCCCCCCcccCCC---CHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHH
Confidence 45788999999999999 799999999999999 999999999993 32 2467888888
Q ss_pred cCCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHH
Q psy938 62 SFDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEE 101 (241)
Q Consensus 62 t~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~ 101 (241)
+ .+.++++++.+++..| .+++++|+.||+.|++.+..-.
T Consensus 327 ~-~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pir 366 (395)
T 3i05_A 327 L-EDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQ 366 (395)
T ss_dssp C-CCSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 4678899999888866 6999999999999999876543
No 27
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=99.54 E-value=9.8e-15 Score=136.76 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=83.7
Q ss_pred CCCceeeecccccCCCC--CccccCC-CCeEeecCCCCCHHHHHHHhhc--CCC-----------------hhHHHHHHH
Q psy938 3 VTGDGGLTTPIIESESG--EKFGKSA-RNAIWLDSKLSSSFELYQYLIR--TKD-----------------SEVYDLLKL 60 (241)
Q Consensus 3 ~~~~~~lt~pLL~g~dG--~KmsKS~-gn~I~L~~~~Tsp~~~yq~~~~--~~D-----------------~~v~~~l~~ 60 (241)
..+++++++|+|||+|| +|||||. +|+|||++ +|.++++|+++ .+| +.+..|+++
T Consensus 269 ~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D---~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~ 345 (406)
T 3tze_A 269 EKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDD---AQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKY 345 (406)
T ss_dssp CCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTC---CHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHH
T ss_pred CCCceeeccCcccCCCCCCcCCCCCCCCCcccCCC---CHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHH
Confidence 35678999999999999 6999999 78999999 99999999999 454 247888888
Q ss_pred hcCCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHHH
Q psy938 61 FSFDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEGL 103 (241)
Q Consensus 61 ~t~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~a 103 (241)
|+. +.++++++.+++..+ .+++++|+.||+.|++.++.-...
T Consensus 346 ~~~-~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer 388 (406)
T 3tze_A 346 FLD-DDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQES 388 (406)
T ss_dssp HCC-CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcC-CcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 873 678999999998766 699999999999999999875543
No 28
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=99.54 E-value=4.4e-15 Score=136.55 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=80.4
Q ss_pred CCceeeecccccCC-CC-CccccCC-CCeEeecCCCCCHHHHHHHhhcCCC------hhHHHHHHHhcC----------C
Q psy938 4 TGDGGLTTPIIESE-SG-EKFGKSA-RNAIWLDSKLSSSFELYQYLIRTKD------SEVYDLLKLFSF----------D 64 (241)
Q Consensus 4 ~~~~~lt~pLL~g~-dG-~KmsKS~-gn~I~L~~~~Tsp~~~yq~~~~~~D------~~v~~~l~~~t~----------l 64 (241)
..++.++.|+|||+ || +|||||. +|+|||++ +|.++++|++++.+ +.+..|++++++ +
T Consensus 213 ~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d---~p~~i~kKI~ka~td~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 289 (348)
T 2j5b_A 213 KIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD---TEQEVSEKISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCGK 289 (348)
T ss_dssp CCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC---CHHHHHHHHHHSCCCSSSTTCHHHHHHHHTHHHHHSCEEETTE
T ss_pred CCceeecCccccCCCCcccccccCCCCCeEeecC---CHHHHHHHHhcccCCCCCCCCchHhHHHHhhhhhhcccccccC
Confidence 34667899999999 67 6999999 68999999 99999999999844 578999888643 3
Q ss_pred CHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCHH
Q psy938 65 SLAAIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEE 101 (241)
Q Consensus 65 ~~eei~~i~~~~~~~~~~~~~Kk~LA~~i~~~vhG~~ 101 (241)
+.++++++++++. +.+++++|+.||++|++.+|.-.
T Consensus 290 ~~~~~~el~~~~~-~~~~~~~K~~la~~l~~~l~pir 325 (348)
T 2j5b_A 290 IYTDIESIQEDFS-SMNKRELKTDVANYINTIIDLVR 325 (348)
T ss_dssp EESSHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHc-ccCHHHHHHHHHHHHHHHHHHHH
Confidence 4567888998888 88999999999999999998643
No 29
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.53 E-value=4.4e-15 Score=136.62 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=81.6
Q ss_pred Cceeee--cccccCCCC--CccccCCCC---eEeecCCCCCHHHHHHHhhcCC-------------ChhHHHHHHHhcCC
Q psy938 5 GDGGLT--TPIIESESG--EKFGKSARN---AIWLDSKLSSSFELYQYLIRTK-------------DSEVYDLLKLFSFD 64 (241)
Q Consensus 5 ~~~~lt--~pLL~g~dG--~KmsKS~gn---~I~L~~~~Tsp~~~yq~~~~~~-------------D~~v~~~l~~~t~l 64 (241)
++..++ +|+|+|+|| +|||||.+| +|||++ +|+++++|++++. |+++.+++.+|+++
T Consensus 182 P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D---~~~~i~~KI~~a~td~~~~~~~~~~~~p~v~~~~~~~~~~ 258 (348)
T 2yy5_A 182 PQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD---PKEVVVKKIRQATTDSFNKIRFASKTQPGVTNMLTILKAL 258 (348)
T ss_dssp CEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC---CHHHHHHHHHTCCCCSSCCCSCCTTTCHHHHHHHHHHHHH
T ss_pred CeeecccccccccCCCCcchhcCCCCCCCCceEeecC---CHHHHHHHHHhCCCCCccccccCCCCCCchhhHHHHHHhC
Confidence 344454 799999999 899999999 899999 9999999999972 36788999999988
Q ss_pred CHHHHH---------HHHHHhhcCCChHHHHHHHHHHHHhhccCHH
Q psy938 65 SLAAIE---------DFKRQNEHKPEERRAQKKLAEDLTLLVHGEE 101 (241)
Q Consensus 65 ~~eei~---------~i~~~~~~~~~~~~~Kk~LA~~i~~~vhG~~ 101 (241)
+.++++ ++++++. +.+++++|+.||++|++.++.-.
T Consensus 259 ~~~~~~~~~~~~~~~el~~~~~-g~~~~~~K~~La~~i~~~l~pir 303 (348)
T 2yy5_A 259 LKEPVNQSLTNQLGNDLEAYFS-TKSYLDLKNALTEATVNLLVNIQ 303 (348)
T ss_dssp TTSGGGHHHHHHHCSCHHHHGG-GCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHhhhhhcccchHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 889999 9999998 79999999999999999987643
No 30
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=99.48 E-value=4.1e-14 Score=131.25 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=78.0
Q ss_pred CceeeecccccCC-CC-CccccCC-CCeEeecCCCCCHHHHHHHhhcC-------CChhHHHHHHHhc-----C------
Q psy938 5 GDGGLTTPIIESE-SG-EKFGKSA-RNAIWLDSKLSSSFELYQYLIRT-------KDSEVYDLLKLFS-----F------ 63 (241)
Q Consensus 5 ~~~~lt~pLL~g~-dG-~KmsKS~-gn~I~L~~~~Tsp~~~yq~~~~~-------~D~~v~~~l~~~t-----~------ 63 (241)
+++++++|+|+|+ || +|||||. +|+|||++ +|+++++|++++ +++.+..|++++. .
T Consensus 229 ~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D---~p~~i~~KI~kA~td~~~~~~n~~~~~~~~~~f~~~~~f~~~~~ 305 (373)
T 3vgj_A 229 KPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD---SESDVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRK 305 (373)
T ss_dssp CCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC---CHHHHHHHHHHSCCCTTCCTTCHHHHHHHHTHHHHHSSEEECCC
T ss_pred CceEEeCCeeecCCCCCCCCcCCCCCCeeecCC---CHHHHHHHHHhCcCCCCCCCCCcchhhhhhhhhhhhhhhccccc
Confidence 4688999999997 99 5999999 58999999 999999999997 5667777765432 1
Q ss_pred ------CCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHH
Q psy938 64 ------DSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEG 102 (241)
Q Consensus 64 ------l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~ 102 (241)
++.++++++++++..+ .+|+++|+.||+.|++.+..-..
T Consensus 306 ~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire 351 (373)
T 3vgj_A 306 EKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRD 351 (373)
T ss_dssp GGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1235788899888866 69999999999999999886443
No 31
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=99.47 E-value=6.4e-14 Score=138.83 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=79.9
Q ss_pred CceeeecccccCC-CC-CccccCCC-CeEeecCCCCCHHHHHHHhhcC----------------------CChhHHHHHH
Q psy938 5 GDGGLTTPIIESE-SG-EKFGKSAR-NAIWLDSKLSSSFELYQYLIRT----------------------KDSEVYDLLK 59 (241)
Q Consensus 5 ~~~~lt~pLL~g~-dG-~KmsKS~g-n~I~L~~~~Tsp~~~yq~~~~~----------------------~D~~v~~~l~ 59 (241)
+++++++|+|+|+ || +|||||.+ |+|||++ +|+++++|++++ +++.+..|++
T Consensus 212 ~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D---~p~~i~kKI~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~ 288 (690)
T 3p0j_A 212 KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED---TEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQ 288 (690)
T ss_dssp CCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTC---CHHHHHHHHHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHH
T ss_pred CceEeecCeeecCCCCCcCCCCCCCCCeeeccC---CHHHHHHHHHhCcCCCcccccccccCCCCcccCCCCchHHHHHH
Confidence 4688999999999 99 59999997 7999999 999999999997 4678999999
Q ss_pred HhcCC-----------CHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccC
Q psy938 60 LFSFD-----------SLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHG 99 (241)
Q Consensus 60 ~~t~l-----------~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG 99 (241)
+|.+. +.++++++.+++..+ .+|+++|+.||+.|++.+..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~P 340 (690)
T 3p0j_A 289 CVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEP 340 (690)
T ss_dssp HTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 98653 346788999998876 69999999999999996654
No 32
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=99.38 E-value=6.9e-13 Score=125.57 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=81.3
Q ss_pred CCceeeecccccCCCCC--ccccCCCC-eEeecCCCCCHHHHHHHhhcC--CC-----------------hhHHHHHHHh
Q psy938 4 TGDGGLTTPIIESESGE--KFGKSARN-AIWLDSKLSSSFELYQYLIRT--KD-----------------SEVYDLLKLF 61 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG~--KmsKS~gn-~I~L~~~~Tsp~~~yq~~~~~--~D-----------------~~v~~~l~~~ 61 (241)
.++..+++|+|+|+||. |||||.+| +|+|.+ +|.++++|+|++ +| +.+++|+.+|
T Consensus 314 ~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D---~p~~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f 390 (451)
T 3foc_A 314 PKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTD---TPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVF 390 (451)
T ss_dssp CCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTC---CHHHHHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHH
T ss_pred CCCeeecCCcccCCCCCCCccCCCCCCCeeeecC---CHHHHHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHH
Confidence 45677899999999994 99999987 899999 999999999993 43 1367888888
Q ss_pred cCCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCHHH
Q psy938 62 SFDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHGEEG 102 (241)
Q Consensus 62 t~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG~~~ 102 (241)
+ .+.++++++.+++..+ .+++++|+.||+.|++.+..-..
T Consensus 391 ~-~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pire 431 (451)
T 3foc_A 391 M-KDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAE 431 (451)
T ss_dssp C-CCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7 6788999999999875 69999999999999999876443
No 33
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=99.22 E-value=5e-11 Score=110.51 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=75.7
Q ss_pred CceeeecccccCCCCCccccCC-CCeEeecCCCCCHHHHHHHhhcC-CC--------------hh---HHHHHHHhcCCC
Q psy938 5 GDGGLTTPIIESESGEKFGKSA-RNAIWLDSKLSSSFELYQYLIRT-KD--------------SE---VYDLLKLFSFDS 65 (241)
Q Consensus 5 ~~~~lt~pLL~g~dG~KmsKS~-gn~I~L~~~~Tsp~~~yq~~~~~-~D--------------~~---v~~~l~~~t~l~ 65 (241)
.+..+.+|+++|+||.|||||. +|+|+|.+ +|.++++|++++ +| ++ +..|..++.+-+
T Consensus 240 ~P~~~~~~~~pgldG~KmS~S~~ns~I~l~D---~p~~i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d 316 (372)
T 3a04_A 240 RPASTYHKLQPGLDGRKMSSSRPDSTIFLTD---PPEVARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPD 316 (372)
T ss_dssp CCEEEEECCCBCTTSSBCCTTSGGGSCBTTC---CHHHHHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCS
T ss_pred ChhhhhhcccCCCCCCccCCCCCCcccccCC---CHHHHHHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCC
Confidence 4567788999999999999998 55899999 999999999997 22 23 344444455457
Q ss_pred HHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccC
Q psy938 66 LAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHG 99 (241)
Q Consensus 66 ~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG 99 (241)
.++++++.++++.| .++.++|+.||+.|++.+..
T Consensus 317 ~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p 351 (372)
T 3a04_A 317 DGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAE 351 (372)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 88999999999876 79999999999999999865
No 34
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=99.18 E-value=6.5e-12 Score=115.22 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=66.8
Q ss_pred cccccCC-CC-CccccCC---CCeEeecCCCCCHHHHHHHhhcC-CCh-----------------hHHHHHHHhcCCCHH
Q psy938 11 TPIIESE-SG-EKFGKSA---RNAIWLDSKLSSSFELYQYLIRT-KDS-----------------EVYDLLKLFSFDSLA 67 (241)
Q Consensus 11 ~pLL~g~-dG-~KmsKS~---gn~I~L~~~~Tsp~~~yq~~~~~-~D~-----------------~v~~~l~~~t~l~~e 67 (241)
.|+|+|+ || +|||||. +|+|||++ +|+++++|++++ +|+ .+..|+..|++ +
T Consensus 189 ~~~l~gL~dg~~KMSKS~~~~~~~I~L~D---~p~~i~kKI~~a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~~~---~ 262 (341)
T 3sz3_A 189 NARVMSLQDATKKMSKSDDNRKNVITLLE---DPKSIIKKINKAQTDAETPPRIAYDVENKAGIANLMGLYSAATG---K 262 (341)
T ss_dssp CCCCEETTEEEEECCTTCSCGGGCCBTTC---CHHHHHHHHHTCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHC---C
T ss_pred cccccCCCCCCCccCCCCCCCCCeeecCC---CHHHHHHHhhhccCCCCCCcccccCCCCCcchhHHHHHHHHcCC---c
Confidence 3556678 68 6999999 78999999 999999999998 332 34555555554 5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCHH
Q psy938 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEE 101 (241)
Q Consensus 68 ei~~i~~~~~~~~~~~~~Kk~LA~~i~~~vhG~~ 101 (241)
+++++++++..+.+++++|+.||+.|++.++.-.
T Consensus 263 ~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pir 296 (341)
T 3sz3_A 263 TFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQ 296 (341)
T ss_dssp CHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6777778887437899999999999999887643
No 35
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=99.17 E-value=1.6e-11 Score=114.28 Aligned_cols=89 Identities=18% Similarity=0.117 Sum_probs=68.8
Q ss_pred ceeeecccc-------cCC-CC-CccccCC---CCeEeecCCCCCHHHHHHHhhcC-CCh------------h---HHHH
Q psy938 6 DGGLTTPII-------ESE-SG-EKFGKSA---RNAIWLDSKLSSSFELYQYLIRT-KDS------------E---VYDL 57 (241)
Q Consensus 6 ~~~lt~pLL-------~g~-dG-~KmsKS~---gn~I~L~~~~Tsp~~~yq~~~~~-~D~------------~---v~~~ 57 (241)
.|.+..|+| +|+ || +|||||. +|+|||.+ +|+++++|++++ +|+ + +..|
T Consensus 202 ~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D---~p~~I~kKI~ka~TD~~~~~~~~~~~~p~v~~l~~i 278 (388)
T 3prh_A 202 IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD---EPKQLEKKIKSAVTDSEGIVKFDKENKPGVSNLLTI 278 (388)
T ss_dssp CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC---CHHHHHHHHHTCCCCSSCCCCCCTTTCHHHHHHHHH
T ss_pred CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC---CHHHHHHHHhhccCCCCCcccCCCCCCCCcchHHHH
Confidence 455555555 677 55 6999999 89999999 999999999998 452 2 5555
Q ss_pred HHHhcCCCHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCHH
Q psy938 58 LKLFSFDSLAAIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEE 101 (241)
Q Consensus 58 l~~~t~l~~eei~~i~~~~~~~~~~~~~Kk~LA~~i~~~vhG~~ 101 (241)
+..|++ ++++++++++. +.+++++|+.||+.|++.+..-.
T Consensus 279 ~~~~~~---~~~eel~~~y~-g~~~g~lK~~lae~l~~~l~pir 318 (388)
T 3prh_A 279 YSILGN---TTIEELEAKYE-GKGYGEFKGDLAEVVVNALKPIQ 318 (388)
T ss_dssp HHHHHT---CCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCC---CcHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555554 55677777877 55999999999999999887644
No 36
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=99.17 E-value=1.5e-11 Score=112.96 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=68.8
Q ss_pred ccccCC-CC-CccccCCC---CeEeecCCCCCHHHHHHHhhcC-C--------------ChhHHHHHHHhcCCCHHHHHH
Q psy938 12 PIIESE-SG-EKFGKSAR---NAIWLDSKLSSSFELYQYLIRT-K--------------DSEVYDLLKLFSFDSLAAIED 71 (241)
Q Consensus 12 pLL~g~-dG-~KmsKS~g---n~I~L~~~~Tsp~~~yq~~~~~-~--------------D~~v~~~l~~~t~l~~eei~~ 71 (241)
++|+|+ || +|||||.+ |+|||++ +|+++++|++++ + ++.+.+++.+|+.++.+++++
T Consensus 196 ~~l~gL~dg~~KMSKS~~~~~~~I~L~D---~p~~i~kKI~kA~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~~~~~~ee 272 (346)
T 3n9i_A 196 ARVMSLQDPTKKMSKSDDNRNNVIELLE---DPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPE 272 (346)
T ss_dssp CCCBCSSCTTSBCCTTCSCGGGCCBTTS---CHHHHHHHHHTCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred ccCccCCCCccccCCCCCCCCceecCCC---CHHHHHHHHHhCcCCCCCCccccCCCCCCCChhHHHHHHHhcCCccHHH
Confidence 567788 78 59999997 7999999 999999999997 2 235777777776665567778
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCH
Q psy938 72 FKRQNEHKPEERRAQKKLAEDLTLLVHGE 100 (241)
Q Consensus 72 i~~~~~~~~~~~~~Kk~LA~~i~~~vhG~ 100 (241)
+++++..+ +++++|+.||+.|++.+..-
T Consensus 273 l~~~y~~~-~~g~lK~~lae~l~~~L~pi 300 (346)
T 3n9i_A 273 LEAQFTGQ-MYGHLKGAVADAVSGMLSEL 300 (346)
T ss_dssp HHHHTTTC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 88887654 68999999999999887653
No 37
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.54 E-value=4.5e-08 Score=71.19 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEE
Q psy938 145 PGMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANII 211 (241)
Q Consensus 145 ~~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~ 211 (241)
.+++|.++|...|++.|+++|+++|++|.|+|||++++++...+...+ .+.++++.+.+
T Consensus 19 ~~~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd--------~I~v~~~~~~~ 77 (79)
T 1p9k_A 19 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQ--------TVSFAGHSVQV 77 (79)
T ss_dssp SCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSE--------EEEETTEEEEE
T ss_pred CCchHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCC--------EEEECCEEEEE
Confidence 357899999999999999999999999999999999989887765431 56777766543
No 38
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=98.53 E-value=7.7e-08 Score=95.42 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=72.6
Q ss_pred eeeecccccCCCC-Ccc-c-cCCCCeEeecCCCCCHHHHHHHhhc------CCChhHHHHHHHhc---------------
Q psy938 7 GGLTTPIIESESG-EKF-G-KSARNAIWLDSKLSSSFELYQYLIR------TKDSEVYDLLKLFS--------------- 62 (241)
Q Consensus 7 ~~lt~pLL~g~dG-~Km-s-KS~gn~I~L~~~~Tsp~~~yq~~~~------~~D~~v~~~l~~~t--------------- 62 (241)
+.+..+++|+++| .|| | +|.+|+|+|++ +|.++++|+++ ++++.+..|++++.
T Consensus 548 ~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D---~~~~i~~KI~kA~c~p~ve~np~l~~~~~~~~~~~~~~i~r~~~~G 624 (690)
T 3p0j_A 548 VQTLEGRIPALHRPGAAPAVLGADDVLYLDD---NDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALSIERGEANG 624 (690)
T ss_dssp EECCCCSSCCSSCCCC-------CCSCBTTC---CHHHHHHHHHHSCCCTTCSCSHHHHHHHHHHHHHSCEEECCCTTTT
T ss_pred ccccccccccCCCcccccCCCCCCCeeeccC---CHHHHHHHHHHhcCCCCCCCChHHHHHHHHhccCCceEEechhhhC
Confidence 4455678889987 455 4 46799999999 99999999999 58999999999983
Q ss_pred -CCCHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccC
Q psy938 63 -FDSLAAIEDFKRQNEHK-PEERRAQKKLAEDLTLLVHG 99 (241)
Q Consensus 63 -~l~~eei~~i~~~~~~~-~~~~~~Kk~LA~~i~~~vhG 99 (241)
.++.++++++++.+..| .+|+++|..||+.|++++..
T Consensus 625 g~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p 663 (690)
T 3p0j_A 625 GNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQ 663 (690)
T ss_dssp CCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 23356899999999888 79999999999999998874
No 39
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.4e-06 Score=62.38 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=41.0
Q ss_pred CcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCC
Q psy938 147 MSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSP 190 (241)
Q Consensus 147 ~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~ 190 (241)
.+|..+|+..|+++|+++||++|.+|-|+|||++++.|.+.+..
T Consensus 8 ~RLD~~l~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~ 51 (71)
T 2cqj_A 8 RRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTR 51 (71)
T ss_dssp EEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEH
T ss_pred HHHHHHHHHhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCC
Confidence 46888999999999999999999999999999999999988765
No 40
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.76 E-value=2e-05 Score=66.08 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=42.4
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
..+|..+|+..|+++|+++|+++|.+|.|+|||++|++|.+.+..+
T Consensus 102 e~RLD~~L~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~ 147 (180)
T 3j20_D 102 ERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKE 147 (180)
T ss_dssp HTSHHHHHHHHTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTG
T ss_pred hhhhhheeecCcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCC
Confidence 3678889999999999999999999999999999999999888765
No 41
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=97.71 E-value=4.8e-05 Score=62.38 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=41.5
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
+.+|..+|...|++.|+++||++|.+|.|.|||+++++|++.+..+
T Consensus 50 e~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~g 95 (159)
T 1c05_A 50 ESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPG 95 (159)
T ss_dssp HHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTT
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCC
Confidence 4578999999999999999999999999999999998898877654
No 42
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.69 E-value=2.7e-05 Score=66.13 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=42.6
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
..+|..+|+.+|+++|+++|+++|.+|.|+|||++|+.|.+.+..+
T Consensus 106 e~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g 151 (197)
T 3u5c_J 106 ERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLD 151 (197)
T ss_dssp TTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCST
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCC
Confidence 4678899999999999999999999999999999999999888765
No 43
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.58 E-value=6.2e-05 Score=63.11 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=42.7
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
..+|..+|+..|++.|+++|+++|.+|-|.|||+.|++|.+.+..+
T Consensus 106 e~RLD~vL~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~ 151 (181)
T 2xzm_D 106 ERRLQTRVFKLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTD 151 (181)
T ss_dssp TTBHHHHHHHTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCST
T ss_pred ccchhHHHHhccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCC
Confidence 4689999999999999999999999999999999999999988765
No 44
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=97.25 E-value=0.00042 Score=59.18 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=41.4
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
+++|..+|...|++.|+++|+++|.+|.|.|||++++.|++.+...
T Consensus 98 e~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~g 143 (209)
T 2vqe_D 98 ESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPG 143 (209)
T ss_dssp HTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTT
T ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCC
Confidence 3678899999999999999999999999999999998898877654
No 45
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=97.24 E-value=0.0017 Score=51.59 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=49.3
Q ss_pred CCCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEEccc
Q psy938 145 PGMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKSANI 217 (241)
Q Consensus 145 ~~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~~~~ 217 (241)
.+++|..+|...+++.|++.|+++|.+|.|+|||+.+ .+...+... ..+.|+.+... +.++..++
T Consensus 7 ~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~G------D~I~I~~~~~~-~~~~v~~~ 71 (133)
T 1dm9_A 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELN------ATLTLRQGNDE-RTVIVKAI 71 (133)
T ss_dssp TCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTT------CEEEEEETTEE-EEEEECEE
T ss_pred cchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCC------CEEEEEeCCce-eeEEEccc
Confidence 3678999999988888999999999999999999986 777766544 34566666544 34444443
No 46
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=97.01 E-value=0.0003 Score=60.01 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=41.4
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
+++|..+|...|++.|+++|+++|.+|.|.|||++++.|.+.+...
T Consensus 94 e~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~G 139 (205)
T 3r8n_D 94 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 139 (205)
T ss_dssp HTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTT
T ss_pred HhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCC
Confidence 4578888999999999999999999999999999999899888765
No 47
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.93 E-value=0.00033 Score=59.56 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=39.7
Q ss_pred CcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 147 MSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 147 ~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
.+|..+|...|++.|+++||++|.+|.|.|||+.++.|.+.+...
T Consensus 89 ~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~g 133 (201)
T 3bbn_D 89 MRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQ 133 (201)
T ss_dssp SBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTT
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCC
Confidence 456667888899999999999999999999999999998877654
No 48
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=96.86 E-value=0.00085 Score=59.94 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=40.9
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEcc-E-EecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNY-K-KVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg-~-~v~d~~~~l~~~ 191 (241)
.++|..+|++.|++.|+++|+++|.+|.|+||| + ++++|...+...
T Consensus 6 ~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~ 53 (291)
T 3hp7_A 6 KERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDG 53 (291)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETT
T ss_pred hhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCC
Confidence 357899999999999999999999999999999 8 788888777544
No 49
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=96.69 E-value=0.00093 Score=49.19 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=36.0
Q ss_pred cHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 148 SMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 148 ~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
+|..+|...+++.|++.++++|.+|.|+|||+.+ .++..+..+
T Consensus 2 RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~g 44 (92)
T 2k6p_A 2 RIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAG 44 (92)
T ss_dssp BHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTT
T ss_pred hHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCC
Confidence 4677888888888999999999999999999987 677766544
No 50
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.41 E-value=5.5e-05 Score=64.09 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=41.7
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
..+|..+|+.+|+++|+++|+++|.+|-|.|||++|+.|.+.+..+
T Consensus 108 e~RLD~~L~r~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~g 153 (195)
T 3iz6_C 108 ARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVE 153 (195)
T ss_dssp TSCCCSSCCCCCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSS
T ss_pred HhhhhHHHHhccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCC
Confidence 3567778999999999999999999999999999999999988765
No 51
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=96.30 E-value=0.0044 Score=55.26 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=39.4
Q ss_pred CCCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 145 PGMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 145 ~~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
.+++|..+|...|.+ |+++|+++|.+|.|+|||+.+ +++..+...
T Consensus 5 ~g~RLdk~La~~g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~g 49 (290)
T 3dh3_A 5 SSVRLNKYISESGIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPG 49 (290)
T ss_dssp CCEEHHHHHHTTTSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTT
T ss_pred cchHHHHHHHhCCCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCC
Confidence 367899999999887 999999999999999999988 777777654
No 52
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=95.85 E-value=0.0073 Score=51.58 Aligned_cols=45 Identities=18% Similarity=0.028 Sum_probs=38.1
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
+++|.++|...+ .-|+++++++|.+|.|+|||+++++++..+...
T Consensus 3 ~~RLd~~L~~~~-~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~g 47 (234)
T 1ksk_A 3 HMRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE 47 (234)
T ss_dssp CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTT
T ss_pred cccHHHHHHHcC-CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCC
Confidence 457888998776 459999999999999999999998788777654
No 53
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=95.43 E-value=0.013 Score=50.49 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=36.9
Q ss_pred CcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 147 MSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 147 ~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
++|.++|...+ ..|+++++++|.+|.|+|||+++++++..+...
T Consensus 3 ~RLd~~L~~~~-~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~g 46 (243)
T 1vio_A 3 LRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQE 46 (243)
T ss_dssp EEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTT
T ss_pred ccHHHHHHHcC-CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCC
Confidence 46788888776 459999999999999999999988787777654
No 54
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.34 E-value=0.048 Score=47.48 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCcHHHHHH-hcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCCCccc-----CCCeEEEEeccccEEEEEEcccch
Q psy938 146 GMSMLELSL-ATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPSAHIL-----PNSLTLLRVEVSANIIAKSANIIA 219 (241)
Q Consensus 146 ~~~l~~lLv-~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~~-----~~~~~llr~GKk~~~~i~~~~~~~ 219 (241)
..+|.=+|. ..|++.+.+|||+.+.||-|.|||.+++|+.+.+..- |++ ...|-++---|.+|.+..+....|
T Consensus 42 ~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~m-DVIsI~kt~e~fr~i~d~kGr~~~~~I~~eea 120 (243)
T 3j20_E 42 SIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIM-DVVSIPETGEHYRVLPNRIGKLILHPISEDEA 120 (243)
T ss_dssp CEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTT-CEEEETTTTEEEEEEECSSSCEEEEEECTTTT
T ss_pred ceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccc-eEEEecccCceeEEEecCCCceEEEEeChhhc
Confidence 467777777 4799999999999999999999999999998876543 221 223445554455555555555555
No 55
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=95.26 E-value=0.0048 Score=58.14 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=22.6
Q ss_pred eeeecccccCCCCCccccCCCCeEeec
Q psy938 7 GGLTTPIIESESGEKFGKSARNAIWLD 33 (241)
Q Consensus 7 ~~lt~pLL~g~dG~KmsKS~gn~I~L~ 33 (241)
..++...++..+|+|||||.||+|++.
T Consensus 283 ~v~~~G~v~~~~G~KMSKS~GN~i~p~ 309 (500)
T 2d5b_A 283 HLNVGGFLLGPDGRKMSKTLGNVVDPF 309 (500)
T ss_dssp EEEEECCEECTTSSCCCTTTTCCCCHH
T ss_pred EEEECceEEeCCCCcccccCCCCCCHH
Confidence 346678888889999999999999765
No 56
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=94.76 E-value=0.015 Score=55.55 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=26.6
Q ss_pred CceeeecccccCC-CCCccccCCCCeEeecC--CCCCHHHHHHHhhcC
Q psy938 5 GDGGLTTPIIESE-SGEKFGKSARNAIWLDS--KLSSSFELYQYLIRT 49 (241)
Q Consensus 5 ~~~~lt~pLL~g~-dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~~ 49 (241)
+++-++.|+|++. +|+|||||.||+|++.+ ++-.|+.+.-|+.+.
T Consensus 262 ~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~ 309 (523)
T 1irx_A 262 APLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARH 309 (523)
T ss_dssp CCBCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSS
T ss_pred CCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 4466788999888 79999999999986652 226888888888873
No 57
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=94.71 E-value=0.055 Score=46.23 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=38.8
Q ss_pred CCcHHHHHH-hcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSL-ATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv-~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
..+|.=+|. ..|++.+.+|||+.+.||-|.|||.+++||.+.+..-
T Consensus 7 slPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~m 53 (213)
T 3kbg_A 7 SVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFM 53 (213)
T ss_dssp CEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTT
T ss_pred ceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccce
Confidence 456766776 4799999999999999999999999999998866543
No 58
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=94.54 E-value=0.021 Score=54.23 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=15.2
Q ss_pred CCCCCccccCCCCeEeec
Q psy938 16 SESGEKFGKSARNAIWLD 33 (241)
Q Consensus 16 g~dG~KmsKS~gn~I~L~ 33 (241)
..+|+|||||.||+|+..
T Consensus 318 ~~~G~KMSKSlGNvi~p~ 335 (542)
T 3u1f_A 318 TKDRKKISKSLGNVFDPV 335 (542)
T ss_dssp EETTBCCBTTTTBCCCHH
T ss_pred ecCCceeccccCCCCChh
Confidence 358999999999998654
No 59
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=94.49 E-value=0.012 Score=59.82 Aligned_cols=41 Identities=27% Similarity=0.137 Sum_probs=29.3
Q ss_pred eeecccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhc
Q psy938 8 GLTTPIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIR 48 (241)
Q Consensus 8 ~lt~pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~ 48 (241)
.++..++.+.+|+|||||.||.|+..+ ++-.++.++=++++
T Consensus 515 v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~ 557 (862)
T 1gax_A 515 VLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIY 557 (862)
T ss_dssp EEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHH
T ss_pred EEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHh
Confidence 556778889999999999999997652 11245555555555
No 60
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=94.44 E-value=0.0083 Score=56.56 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=25.9
Q ss_pred eeecccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhc
Q psy938 8 GLTTPIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIR 48 (241)
Q Consensus 8 ~lt~pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~ 48 (241)
.++...++. +|+|||||.||+|++.+ +.-.++.++=++++
T Consensus 283 ~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~ 324 (497)
T 2csx_A 283 VFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLR 324 (497)
T ss_dssp EEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHH
T ss_pred EEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHh
Confidence 345566665 99999999999997663 11234445545544
No 61
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=93.84 E-value=0.011 Score=53.14 Aligned_cols=46 Identities=15% Similarity=-0.004 Sum_probs=0.0
Q ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCC
Q psy938 146 GMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPS 191 (241)
Q Consensus 146 ~~~l~~lLv~~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~ 191 (241)
+++|.++|...+...|+++++++|.+|.|+|||+++..++..+..+
T Consensus 16 g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~g 61 (325)
T 1v9f_A 16 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 61 (325)
T ss_dssp ----------------------------------------------
T ss_pred CchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCC
Confidence 6788999988775569999999999999999999877777666544
No 62
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=93.84 E-value=0.014 Score=58.74 Aligned_cols=41 Identities=22% Similarity=0.163 Sum_probs=29.2
Q ss_pred eeecccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhc
Q psy938 8 GLTTPIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIR 48 (241)
Q Consensus 8 ~lt~pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~ 48 (241)
.++...+.+.+|+|||||.||.|+..+ ++-.++.++=++++
T Consensus 578 v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~ 620 (821)
T 1ile_A 578 VICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYV 620 (821)
T ss_dssp EEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHH
T ss_pred EEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHh
Confidence 456677788899999999999997662 23455555555554
No 63
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=93.45 E-value=0.037 Score=56.49 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=29.7
Q ss_pred eeecccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhcC
Q psy938 8 GLTTPIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIRT 49 (241)
Q Consensus 8 ~lt~pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~~ 49 (241)
.++...+.+.+|+|||||.||.|+..+ ++-.++.++=++++.
T Consensus 582 v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~ 625 (917)
T 1ffy_A 582 LLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSST 625 (917)
T ss_dssp EEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTS
T ss_pred eeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhcc
Confidence 355577888899999999999997652 123555666566653
No 64
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=93.14 E-value=0.014 Score=56.20 Aligned_cols=38 Identities=24% Similarity=0.107 Sum_probs=25.2
Q ss_pred ecccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhc
Q psy938 10 TTPIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIR 48 (241)
Q Consensus 10 t~pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~ 48 (241)
+...+ +.+|+|||||.||+|++.+ +.-.++.++=++++
T Consensus 329 ~hg~v-~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~ 368 (564)
T 3kfl_A 329 SHGWW-TKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMR 368 (564)
T ss_dssp EECCE-EETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHH
T ss_pred EcccE-eeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 34445 6799999999999998753 12345555545554
No 65
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=93.11 E-value=0.015 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=6.8
Q ss_pred eecccccCCCCCccccCCCCeEeec
Q psy938 9 LTTPIIESESGEKFGKSARNAIWLD 33 (241)
Q Consensus 9 lt~pLL~g~dG~KmsKS~gn~I~L~ 33 (241)
++...++. +|+|||||.||+|++.
T Consensus 310 ~~hg~v~~-~G~KMSKS~GNvi~p~ 333 (536)
T 4dlp_A 310 FAHGFLFN-RGEKMSKSVGNVIDPF 333 (536)
T ss_dssp EEECCEEC-------------CCHH
T ss_pred EeeeeEee-CCceecccCCCCCCHH
Confidence 34455553 9999999999999775
No 66
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=93.10 E-value=0.031 Score=52.62 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=29.1
Q ss_pred eecccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhcC
Q psy938 9 LTTPIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIRT 49 (241)
Q Consensus 9 lt~pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~~ 49 (241)
++...|+. +|+|||||.||.|++.+ ++-+|..++=++++.
T Consensus 255 ~h~g~v~~-~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~ 296 (461)
T 1li5_A 255 MHSGMVMV-DREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG 296 (461)
T ss_dssp CCBCCEEE-TTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSS
T ss_pred EEeeEEEE-CCeEccccCCCccChhHHhhhCCHHHHHHHHHcC
Confidence 33344443 89999999999999873 345788887777765
No 67
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=93.03 E-value=0.013 Score=54.26 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=3.6
Q ss_pred CCCCccccCCCCeEeecC
Q psy938 17 ESGEKFGKSARNAIWLDS 34 (241)
Q Consensus 17 ~dG~KmsKS~gn~I~L~~ 34 (241)
.+|+|||||.||.|++.+
T Consensus 287 ~~G~KMSKS~GN~v~~~~ 304 (414)
T 3c8z_A 287 WDGHKMSKSRGNLVLVSQ 304 (414)
T ss_dssp -------------CBHHH
T ss_pred cCCeEcccccCCcCCHHH
Confidence 489999999999998763
No 68
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=92.86 E-value=0.068 Score=50.58 Aligned_cols=37 Identities=27% Similarity=0.169 Sum_probs=25.2
Q ss_pred cccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhcC
Q psy938 13 IIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIRT 49 (241)
Q Consensus 13 LL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~~ 49 (241)
.+.+.+|+|||||.||.|.+.+ +.-+|..++=++++.
T Consensus 261 g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~ 299 (462)
T 3tqo_A 261 GLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSG 299 (462)
T ss_dssp CCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHS
T ss_pred cEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccC
Confidence 4456799999999999987652 123566665555554
No 69
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=92.63 E-value=0.014 Score=55.39 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=22.7
Q ss_pred ccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhc
Q psy938 12 PIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIR 48 (241)
Q Consensus 12 pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~ 48 (241)
..++. +|+|||||.||+|++.+ ++-.++.++=++++
T Consensus 302 G~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~ 339 (524)
T 2x1l_A 302 GWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLR 339 (524)
T ss_dssp CCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHH
T ss_pred cEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHh
Confidence 44444 89999999999997763 01234444444444
No 70
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=92.57 E-value=0.017 Score=57.34 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=29.7
Q ss_pred eecccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhcC
Q psy938 9 LTTPIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIRT 49 (241)
Q Consensus 9 lt~pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~~ 49 (241)
++...|+. +|+|||||.||+|+.++ ++-.++.++=|+++.
T Consensus 333 ~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 333 PANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp CEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred EEeeeEEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhc
Confidence 34445555 99999999999999872 345777887777775
No 71
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=92.56 E-value=0.028 Score=56.34 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=18.5
Q ss_pred eeecccccCCCCCccccCCCCeEeec
Q psy938 8 GLTTPIIESESGEKFGKSARNAIWLD 33 (241)
Q Consensus 8 ~lt~pLL~g~dG~KmsKS~gn~I~L~ 33 (241)
.++...++. +|+|||||.||.|+..
T Consensus 638 v~~~G~v~~-~G~KMSKS~GNvv~p~ 662 (810)
T 1wkb_A 638 IAVNGFGTL-EGQKMSKSKGNVLNFI 662 (810)
T ss_dssp EEEECCEEE-TTBCCCTTTTCCCBHH
T ss_pred EEEEeEEEe-CCeehhhcCCCcCCHH
Confidence 344444443 8999999999999665
No 72
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=92.51 E-value=0.025 Score=54.25 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=21.5
Q ss_pred CCCccccCCCCeEeecC--CCCCHHHHHHHhhc
Q psy938 18 SGEKFGKSARNAIWLDS--KLSSSFELYQYLIR 48 (241)
Q Consensus 18 dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~ 48 (241)
+|+|||||.||+|++++ ++-.++.++=++++
T Consensus 342 ~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~ 374 (560)
T 3h99_A 342 NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTA 374 (560)
T ss_dssp TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHH
T ss_pred CCeeccccCCCcCCHHHHHHHcCcHHHHHHHHH
Confidence 99999999999998763 12345555555544
No 73
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=92.41 E-value=0.029 Score=57.51 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=27.6
Q ss_pred eeecccccCCCCCccccCCCCeEeecC--CCCCHHHHHHHhhc
Q psy938 8 GLTTPIIESESGEKFGKSARNAIWLDS--KLSSSFELYQYLIR 48 (241)
Q Consensus 8 ~lt~pLL~g~dG~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~ 48 (241)
.++.-.+.. +|+|||||.||+|+..+ ++-.++.++=+++.
T Consensus 638 v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~ 679 (967)
T 1wz2_A 638 IAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMS 679 (967)
T ss_dssp EEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHH
T ss_pred EEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHh
Confidence 344444554 89999999999998762 23467777766654
No 74
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=92.12 E-value=0.018 Score=55.09 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=13.8
Q ss_pred CCCCccccCCCCeEeecC--CC-CCHHHHHHHhhcC
Q psy938 17 ESGEKFGKSARNAIWLDS--KL-SSSFELYQYLIRT 49 (241)
Q Consensus 17 ~dG~KmsKS~gn~I~L~~--~~-Tsp~~~yq~~~~~ 49 (241)
.+|+|||||.||.|.+.+ ++ -+|..++=++++.
T Consensus 295 ~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~ 330 (501)
T 3sp1_A 295 MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS 330 (501)
T ss_dssp CC----------CCCHHHHHHTTCCHHHHHHHHHTS
T ss_pred eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc
Confidence 599999999999987763 12 4566666555554
No 75
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=90.07 E-value=0.1 Score=46.49 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=10.4
Q ss_pred ceeeecccccCCCCCccccCCCCeEeecC
Q psy938 6 DGGLTTPIIESESGEKFGKSARNAIWLDS 34 (241)
Q Consensus 6 ~~~lt~pLL~g~dG~KmsKS~gn~I~L~~ 34 (241)
+.-...|+|.+.+|+||||+.||. .|++
T Consensus 213 p~~~H~pll~~~~g~KLSKR~g~~-~v~~ 240 (298)
T 1nzj_A 213 PDYIHLPLALNPQGAKLSKQNHAP-ALPK 240 (298)
T ss_dssp CEEEEECBCCC--------------CCCS
T ss_pred CeEEEeeeeECCCCCcccccCCcc-Chhc
Confidence 333789999999999999999987 4543
No 76
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=89.93 E-value=0.16 Score=48.42 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCceeeecccccCCCCCccccCCCCeEeec---CCCCCHHHHHHHhhcC
Q psy938 4 TGDGGLTTPIIESESGEKFGKSARNAIWLD---SKLSSSFELYQYLIRT 49 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~---~~~Tsp~~~yq~~~~~ 49 (241)
..+.-...|+|.+.+|+||||+.||. .|. +.--.|..+..|+..+
T Consensus 230 ~~P~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~l 277 (492)
T 2cfo_A 230 TPPNFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLL 277 (492)
T ss_dssp CCCEEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCceEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 34455689999999999999999986 333 2334788898888876
No 77
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.63 E-value=0.57 Score=41.14 Aligned_cols=73 Identities=10% Similarity=-0.054 Sum_probs=52.4
Q ss_pred CCcHHHHHHh-cCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCCCcc-----cCCCeEEEEeccccEEEEEEcccch
Q psy938 146 GMSMLELSLA-TKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPSAHI-----LPNSLTLLRVEVSANIIAKSANIIA 219 (241)
Q Consensus 146 ~~~l~~lLv~-~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~-----~~~~~~llr~GKk~~~~i~~~~~~~ 219 (241)
..+|.=+|.. .+.+.+.+||++.+.||-|.|||...+|+.+-+-.= |+ ....|-+|---|.+|.+.++..+-|
T Consensus 41 slPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~M-DVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA 119 (265)
T 3iz6_D 41 CLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFM-DVISIPKTGENYRLLYDTKGRFRLQSVKDEDA 119 (265)
T ss_dssp --CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTT-CEEECCSSCCEEEEEECTTSCEEEEEECHHHH
T ss_pred heeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEE-EEEEEcCCCCEEEEEECCCCcEEEEECChHHc
Confidence 5677777764 699999999999999999999999999987655321 11 1234556666677777777766555
No 78
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=88.17 E-value=1.1 Score=39.23 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=52.3
Q ss_pred CCcHHHHHH-hcCCCCCHHHHHHHHHh--CCeEEccEEecCCCCccCCCCcc-----cCCCeEEEEeccccEEEEEEccc
Q psy938 146 GMSMLELSL-ATKCFPRDKEANLTISE--GGFYVNYKKVQNPQEVLSPSAHI-----LPNSLTLLRVEVSANIIAKSANI 217 (241)
Q Consensus 146 ~~~l~~lLv-~~gl~~SksEARRlI~q--GgV~VNg~~v~d~~~~l~~~~~~-----~~~~~~llr~GKk~~~~i~~~~~ 217 (241)
..+|.=+|. ..+.+.+.+|||+.+.| |-|.|||...+|+.+-+-.= |+ ....|-+|---|.+|.+.+...+
T Consensus 41 slPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~M-DVIsI~kt~e~fRll~D~kGrf~l~~I~~e 119 (260)
T 2xzm_W 41 SLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLM-DVVRIEKTDQSFRILYDTKGRFVLKSLSKE 119 (260)
T ss_dssp CEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTT-CEEEEGGGTEEEEEEECSSSCEEEEECCTT
T ss_pred eehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEE-EEEeEcCCCCEEEEEEcCCccEEEEEcChH
Confidence 467777776 46899999999999999 99999999999987655322 11 12334456556666777776655
Q ss_pred ch
Q psy938 218 IA 219 (241)
Q Consensus 218 ~~ 219 (241)
-|
T Consensus 120 EA 121 (260)
T 2xzm_W 120 EA 121 (260)
T ss_dssp GG
T ss_pred Hc
Confidence 55
No 79
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=83.97 E-value=0.17 Score=47.81 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=16.7
Q ss_pred eecccc-cCCCCC--ccccCCCCeEeecC
Q psy938 9 LTTPII-ESESGE--KFGKSARNAIWLDS 34 (241)
Q Consensus 9 lt~pLL-~g~dG~--KmsKS~gn~I~L~~ 34 (241)
++..++ .+.||+ |||||.||+|++++
T Consensus 270 ~~~g~V~l~~dG~~~KMSKr~Gn~v~l~d 298 (464)
T 3fnr_A 270 ILAQMVSLLKDGEPYKMSKRAGNFILMSD 298 (464)
T ss_dssp EEECCEEEEETTEECCC---CCSSCBHHH
T ss_pred EEeeeEEecCCCcccCCcCcCCCCCCHHH
Confidence 445555 456885 99999999998774
No 80
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=83.74 E-value=0.55 Score=41.15 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=48.9
Q ss_pred CCcHHHHHHh-cCCCCCHHHHHHHHHhCCeEEccEEecCCCCccCCCCcc-----cCCCeEEEEeccccEEEEEEcccch
Q psy938 146 GMSMLELSLA-TKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPSAHI-----LPNSLTLLRVEVSANIIAKSANIIA 219 (241)
Q Consensus 146 ~~~l~~lLv~-~gl~~SksEARRlI~qGgV~VNg~~v~d~~~~l~~~~~~-----~~~~~~llr~GKk~~~~i~~~~~~~ 219 (241)
..+|.=+|.. .+.+.+.+||++.+.||-|.|||...+|+.+-+-.= |+ ....|-+|---|.+|.+.+...+-|
T Consensus 41 slPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~M-DVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA 119 (261)
T 3u5c_E 41 SLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFM-DVITLDATNENFRLVYDVKGRFAVHRITDEEA 119 (261)
T ss_dssp EEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETT-CEEEETTTTEEEECCBCSSSCBCCEECCTTGG
T ss_pred heeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceE-EEEEEcCCCCEEEEEECCCCcEEEEECChHHc
Confidence 4577777764 699999999999999999999999999987644221 11 1122334444455555555554444
No 81
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=82.44 E-value=0.65 Score=47.22 Aligned_cols=13 Identities=38% Similarity=0.315 Sum_probs=11.3
Q ss_pred ccccCCCCeEeec
Q psy938 21 KFGKSARNAIWLD 33 (241)
Q Consensus 21 KmsKS~gn~I~L~ 33 (241)
|||||.||.|..+
T Consensus 639 KMSKSkGNvVdP~ 651 (880)
T 4arc_A 639 KMSKSKNNGIDPQ 651 (880)
T ss_dssp ECCTTTTCCCCHH
T ss_pred cccCcCCCCCCHH
Confidence 9999999998544
No 82
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=81.97 E-value=3.2 Score=39.45 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=39.0
Q ss_pred CCceeeecccccCCCCCccccCCCCeEeec---CCCCCHHHHHHHhhcC----CCh---hHHHHHHHhc
Q psy938 4 TGDGGLTTPIIESESGEKFGKSARNAIWLD---SKLSSSFELYQYLIRT----KDS---EVYDLLKLFS 62 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~---~~~Tsp~~~yq~~~~~----~D~---~v~~~l~~~t 62 (241)
..+.-...|||.+.+|+||||..|. +.|. +.--.|..+..|+..+ +|. ....++.+|.
T Consensus 247 ~~P~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~F~ 314 (490)
T 4g6z_A 247 EVPVYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEWFD 314 (490)
T ss_dssp CCCEEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHHCC
T ss_pred CCCeEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhhCC
Confidence 3344467899999999999999875 3332 3334788888888876 232 2355555554
No 83
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=81.17 E-value=0.25 Score=50.16 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=22.5
Q ss_pred CCC-------CccccCCCCeEeecC--CCCCHHHHHHHhhc
Q psy938 17 ESG-------EKFGKSARNAIWLDS--KLSSSFELYQYLIR 48 (241)
Q Consensus 17 ~dG-------~KmsKS~gn~I~L~~--~~Tsp~~~yq~~~~ 48 (241)
.+| +|||||.||.|..++ ++-.++.++=+++.
T Consensus 626 ~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~ 666 (878)
T 2v0c_A 626 EDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILF 666 (878)
T ss_dssp TTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHH
T ss_pred CCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhc
Confidence 589 899999999997652 12345556656665
No 84
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=80.35 E-value=0.81 Score=44.48 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=32.0
Q ss_pred eecccccCCCCCccccCCCCeEeec---CCCCCHHHHHHHhhcC
Q psy938 9 LTTPIIESESGEKFGKSARNAIWLD---SKLSSSFELYQYLIRT 49 (241)
Q Consensus 9 lt~pLL~g~dG~KmsKS~gn~I~L~---~~~Tsp~~~yq~~~~~ 49 (241)
...|||.+.+|+||||+.|+. .|. +.--.|..+..|+..+
T Consensus 347 ~hlpli~~~~g~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 347 MHIPLILGSDRTPLSKRHGAT-SVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp CEECCCBCTTSSBCCTTTCSS-BHHHHHHTTCCHHHHHHHHTTT
T ss_pred EEeeeeeCCCCCcccccCCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 588999999999999999983 444 3334788999988775
No 85
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=79.75 E-value=0.8 Score=43.35 Aligned_cols=45 Identities=16% Similarity=0.033 Sum_probs=33.3
Q ss_pred CCceeeecccccCCCCCccccCCCCeEeec---CCCCCHHHHHHHhhcC
Q psy938 4 TGDGGLTTPIIESESGEKFGKSARNAIWLD---SKLSSSFELYQYLIRT 49 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~---~~~Tsp~~~yq~~~~~ 49 (241)
..+.-...|++.+.+|+||||+.|+. .|+ +.--.|..+..|+..+
T Consensus 245 ~~p~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 245 APPVFAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp CCCEEEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTS
T ss_pred CCCeEEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 34455678999999999999999987 444 2223688888887776
No 86
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=79.71 E-value=0.92 Score=43.05 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=32.0
Q ss_pred ceeeecccccCCCCCccccCCCCeEeec---CCCCCHHHHHHHhhcC
Q psy938 6 DGGLTTPIIESESGEKFGKSARNAIWLD---SKLSSSFELYQYLIRT 49 (241)
Q Consensus 6 ~~~lt~pLL~g~dG~KmsKS~gn~I~L~---~~~Tsp~~~yq~~~~~ 49 (241)
+.-...|||.+.+|+||||+.|+. .|. +.--.|..+..|+..+
T Consensus 240 P~f~H~pli~~~~g~KLSKR~g~~-~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 240 PVFMHIPLILGSDRTPLSKRHGAT-SVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp CEEEEECCEECTTSSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHT
T ss_pred CeEEEEeeeeCCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 334479999999999999999984 444 2223688888888765
No 87
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=79.30 E-value=0.33 Score=46.95 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=11.6
Q ss_pred CCCCccccCCCCeEeecC
Q psy938 17 ESGEKFGKSARNAIWLDS 34 (241)
Q Consensus 17 ~dG~KmsKS~gn~I~L~~ 34 (241)
.+|+|||||.||+|++++
T Consensus 390 ~~g~KMSKr~Gn~v~l~d 407 (592)
T 1iq0_A 390 LEGRQMSGRKGLAVSVDE 407 (592)
T ss_dssp ETTBCSCC----CCBHHH
T ss_pred cCCCcccCCCCCccCHHH
Confidence 378999999999998774
No 88
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=78.20 E-value=1.2 Score=42.11 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=32.4
Q ss_pred CceeeecccccCCCCCccccCCCCeEeec---CCCCCHHHHHHHhhcC
Q psy938 5 GDGGLTTPIIESESGEKFGKSARNAIWLD---SKLSSSFELYQYLIRT 49 (241)
Q Consensus 5 ~~~~lt~pLL~g~dG~KmsKS~gn~I~L~---~~~Tsp~~~yq~~~~~ 49 (241)
+.| ...||+.+.+|+||||+.|+. .|. +.--.|..+..|+..+
T Consensus 228 p~~-~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~l 273 (468)
T 1j09_A 228 PRF-YHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLM 273 (468)
T ss_dssp CEE-EEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHH
T ss_pred CeE-EEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHh
Confidence 345 479999999999999999986 333 2234688888887764
No 89
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=77.05 E-value=4.4 Score=38.49 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=31.9
Q ss_pred ceeeecccccCCCCCccccCCCCeEeec---CCCCCHHHHHHHhhcC
Q psy938 6 DGGLTTPIIESESGEKFGKSARNAIWLD---SKLSSSFELYQYLIRT 49 (241)
Q Consensus 6 ~~~lt~pLL~g~dG~KmsKS~gn~I~L~---~~~Tsp~~~yq~~~~~ 49 (241)
+.-...||+.+.+|+||||+.|+. .|+ +.--.|..+..|+..+
T Consensus 242 P~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 242 PKFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp CEEEEECCEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTS
T ss_pred CeEEEeeeeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHHh
Confidence 344489999999999999999884 333 2223688888888776
No 90
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=67.08 E-value=5.7 Score=30.56 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=24.3
Q ss_pred hCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEE
Q psy938 171 EGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAK 213 (241)
Q Consensus 171 qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~ 213 (241)
.++++|||++|+.+ ..+... . .|+.|+-.+|++.
T Consensus 89 ~ngt~VNG~~V~~~-~~L~~G------D--~I~lG~~~~FrFn 122 (124)
T 3fm8_A 89 NTRTFVNGSSVSSP-IQLHHG------D--RILWGNNHFFRLN 122 (124)
T ss_dssp TCCEEETTEECCSC-EEECTT------C--EEEETTTEEEEEE
T ss_pred CCCEEECCEEcCCc-EECCCC------C--EEEECCCeEEEEE
Confidence 46899999999854 233322 2 6899998888764
No 91
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=62.34 E-value=7.5 Score=30.80 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=25.4
Q ss_pred HhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEEc
Q psy938 170 SEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKSA 215 (241)
Q Consensus 170 ~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~~ 215 (241)
+..|++|||++|+.+ ..+.. |. .|+.|+.++|++.-.
T Consensus 108 S~ngt~VNG~~i~~~-~~L~~------GD--~I~~G~~~~Frf~~P 144 (154)
T 4ejq_A 108 EGADTYVNGKKVTEP-SILRS------GN--RIIMGKSHVFRFNHP 144 (154)
T ss_dssp TTCCEEETTEECCSC-EECCT------TC--EEEETTTEEEEEECH
T ss_pred CCCceEECCEEcCCc-eECCC------CC--EEEECCcEEEEEcCh
Confidence 457899999999654 22332 22 689999887776543
No 92
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=57.05 E-value=10 Score=35.85 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=28.4
Q ss_pred CCceeeecccccCCCCCccccCCCCeEeec---CCCCCHHHHHHHhhcC
Q psy938 4 TGDGGLTTPIIESESGEKFGKSARNAIWLD---SKLSSSFELYQYLIRT 49 (241)
Q Consensus 4 ~~~~~lt~pLL~g~dG~KmsKS~gn~I~L~---~~~Tsp~~~yq~~~~~ 49 (241)
..+.-...|||.+.+|+|+||..|.. .+. +.--.|..+..|+..+
T Consensus 256 ~~P~y~H~pli~~~~g~kLSKR~~~~-~v~~~~~~G~lPeAl~NyLalL 303 (512)
T 4gri_A 256 KPPIYCHLPMVMGNDGQKLSKRHGST-ALRQFIEDGYLPEAIINYVTLL 303 (512)
T ss_dssp CCCEEEEECCCBCTTSSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHS
T ss_pred CCCeEEecchhccccccccCcccccc-cHHHHHHcCCChHHHHHHHHHh
Confidence 44556789999999999999987642 222 1112455555555443
No 93
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.79 E-value=1.5 Score=42.40 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=11.2
Q ss_pred ceeeecccccCCCCCccccCCCC
Q psy938 6 DGGLTTPIIESESGEKFGKSARN 28 (241)
Q Consensus 6 ~~~lt~pLL~g~dG~KmsKS~gn 28 (241)
+.-...|+| ..+|+|||||.+|
T Consensus 315 P~y~H~~~L-~~~g~KLSKR~~~ 336 (553)
T 3aii_A 315 PEFIHYGRL-KMDDVALSTSGAR 336 (553)
T ss_dssp CEEECCCCB-C-------CHHHH
T ss_pred CeEEEeeEE-ecCCceechhhhh
Confidence 334589999 5699999999886
No 94
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=55.06 E-value=2.1 Score=41.75 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.3
Q ss_pred CCCCccccCCC--CeEeecC
Q psy938 17 ESGEKFGKSAR--NAIWLDS 34 (241)
Q Consensus 17 ~dG~KmsKS~g--n~I~L~~ 34 (241)
.+|.|||||.| |+|.|++
T Consensus 420 ~~~~KMSkr~G~~n~v~l~d 439 (629)
T 2zue_A 420 RPEGKFSGRKGTWVGFTVDE 439 (629)
T ss_dssp BTTBCCCTTTTTTTTCBHHH
T ss_pred cCCCcccCCCCCCCeeeHHH
Confidence 36789999999 9998774
No 95
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=53.18 E-value=14 Score=30.32 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=24.7
Q ss_pred CCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEEc
Q psy938 172 GGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKSA 215 (241)
Q Consensus 172 GgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~~ 215 (241)
..++|||.+|+.|- .+. +|. .|..|+.++|++.-.
T Consensus 140 a~t~VNG~~I~~~~-~L~------~GD--rI~lG~~h~Frfn~P 174 (184)
T 4egx_A 140 ADTYVNGKKVTEPS-ILR------SGN--RIIMGKSHVFRFNHP 174 (184)
T ss_dssp CCEEETTEECCSCE-ECC------TTC--EEEETTTEEEEEECH
T ss_pred CeEEEcCEEccccE-EcC------CCC--EEEECCCCEEEECCh
Confidence 46999999998653 222 222 578999998887644
No 96
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=52.16 E-value=9.1 Score=28.79 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=23.5
Q ss_pred hCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccE
Q psy938 171 EGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSAN 209 (241)
Q Consensus 171 qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~ 209 (241)
+|.|+|||+++ .+ ..+... +-++|. .-||.|.=..
T Consensus 61 nGtVFVNGqrv-~~-~~I~~g-DtI~g~-v~lrFGnvea 95 (102)
T 3uv0_A 61 VGKIFVNDQEE-TV-VDIGME-NAVAGK-VKLRFGNVEA 95 (102)
T ss_dssp SSCEEETTEEE-SE-EEECGG-GCBTTE-EEEEETTEEE
T ss_pred cCcEEECCEEe-ee-EEccCC-cccccE-EEEEecCEEE
Confidence 35599999999 43 334433 566665 6899997543
No 97
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=37.22 E-value=23 Score=26.43 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=23.1
Q ss_pred HhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEE
Q psy938 170 SEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKS 214 (241)
Q Consensus 170 ~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~ 214 (241)
+.+|++|||+++..+ ..+.. +. .|+.|....+++..
T Consensus 78 S~ngt~vNg~~i~~~-~~L~~------GD--~I~iG~~~~~~f~~ 113 (120)
T 1wln_A 78 MDAETYVDGQRISET-TMLQS------GM--RLQFGTSHVFKFVD 113 (120)
T ss_dssp SSSCEEETSCBCSSC-EEECT------TC--EEEETTTEEEEEEC
T ss_pred CCCCEEECCEEcCCC-EECCC------CC--EEEECCceEEEEEC
Confidence 347999999999743 22332 22 68999965555543
No 98
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=36.14 E-value=32 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=24.3
Q ss_pred hCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEEc
Q psy938 171 EGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKSA 215 (241)
Q Consensus 171 qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~~ 215 (241)
.+|.+|||+++.. ..+... . +|+.|.-.+......
T Consensus 81 ~NGT~vNg~~i~~--~~L~~G------D--~I~iG~~~~~~~~~~ 115 (131)
T 3hx1_A 81 VNGLMINGKKVQE--HIIQTG------D--EIVMGPQVSVRYEYR 115 (131)
T ss_dssp SSCEEETTEEESE--EECCTT------C--EEECSTTCEEEEEEE
T ss_pred CCceEECCEEeEe--EECCCC------C--EEEECCEEEEEEEEe
Confidence 4799999999874 333322 2 689999877666554
No 99
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=28.38 E-value=40 Score=24.83 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=24.2
Q ss_pred hCCeEEccEEecCCC-CccCCCCcccCCCeEEEEeccccEEEEEEc
Q psy938 171 EGGFYVNYKKVQNPQ-EVLSPSAHILPNSLTLLRVEVSANIIAKSA 215 (241)
Q Consensus 171 qGgV~VNg~~v~d~~-~~l~~~~~~~~~~~~llr~GKk~~~~i~~~ 215 (241)
.+|.+|||+++.... ..+. ++ -.|+.|.-.+.++++.
T Consensus 75 ~nGT~vng~~l~~~~~~~L~------~g--d~i~lG~~~~~~~~~~ 112 (118)
T 1uht_A 75 SNGTLLNSNALDPETSVNLG------DG--DVIKLGEYTSILVNFV 112 (118)
T ss_dssp SSCCEESSSBCCTTCEEECC------TT--EEEEETTTEEEEEEEE
T ss_pred CCCeEECCEECCCCCeEEcC------CC--CEEEECCeEEEEEEEe
Confidence 468889998875321 1122 12 3799999888777775
No 100
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=27.83 E-value=40 Score=24.39 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEE
Q psy938 172 GGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAK 213 (241)
Q Consensus 172 GgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~ 213 (241)
+|.+|||+++..+ ..+... . +|+.|.-.|.++.
T Consensus 69 nGt~vng~~i~~~-~~L~~G------d--~i~~G~~~~~~~~ 101 (106)
T 3gqs_A 69 NGVIVEGRKIEHQ-STLSAN------Q--VVALGTTLFLLVD 101 (106)
T ss_dssp SCCEETTEECSSE-EECCTT------C--CEEETTEEEEEEE
T ss_pred CCeEECCEECCCC-eECCCC------C--EEEECCEEEEEEc
Confidence 6899999998753 233322 2 6899987766554
No 101
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=26.85 E-value=57 Score=24.89 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=25.9
Q ss_pred hCCeEEccEEecCCCCc--cCCCCcccCCCeEEEEeccccEEEEEEc
Q psy938 171 EGGFYVNYKKVQNPQEV--LSPSAHILPNSLTLLRVEVSANIIAKSA 215 (241)
Q Consensus 171 qGgV~VNg~~v~d~~~~--l~~~~~~~~~~~~llr~GKk~~~~i~~~ 215 (241)
.+|.+|||+++..|+.. .......|..+ -+|+.|.-.+.++...
T Consensus 75 ~NGT~vNg~~i~~~~~~~~~~~~~~~L~~G-D~I~iG~~~~~~~~~~ 120 (139)
T 1mzk_A 75 LNGTLVNSHSISHPDLGSRKWGNPVELASD-DIITLGTTTKVYVRIS 120 (139)
T ss_dssp SSCCEETTEESSCCCTTTCCCCCCEECCTT-EEEECSSSCEEEEEEE
T ss_pred CCCEEECCEECcCcccccccCCceEECCCC-CEEEECCEEEEEEEcC
Confidence 48899999999753100 00001122222 3799999888777664
No 102
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=26.59 E-value=80 Score=24.35 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=24.9
Q ss_pred HhCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEEEEEccc
Q psy938 170 SEGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANIIAKSANI 217 (241)
Q Consensus 170 ~qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~i~~~~~ 217 (241)
+.+|.+|||+++......+.. | -+|+.|...-+++++...
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~------G--D~I~lG~~~~~~f~~~~~ 124 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKN------G--DRIVFGKSCSFLFKYASS 124 (151)
T ss_dssp CSSCEEETTEECCSSCEEECS------S--EEEEETTTEEEEEEECSS
T ss_pred CCCCeEECCEEcCCCceECCC------C--CEEEECCCcEEEEEEcCC
Confidence 568999999998642122222 2 279999954455555433
No 103
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=22.17 E-value=65 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=19.8
Q ss_pred hCCeEEccEEecCCCCccCCCCcccCCCeEEEEeccccEEE
Q psy938 171 EGGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRVEVSANII 211 (241)
Q Consensus 171 qGgV~VNg~~v~d~~~~l~~~~~~~~~~~~llr~GKk~~~~ 211 (241)
.+|.+|||+++. + ..+.. + -.|+.|+-.|.+
T Consensus 107 ~NGT~VNg~~i~-~-~~L~~------G--D~I~iG~~~l~f 137 (143)
T 2kb3_A 107 LNGTYVNREPRN-A-QVMQT------G--DEIQIGKFRLVF 137 (143)
T ss_dssp SSCCEETTEECS-E-EECCT------T--EEEEETTEEEEE
T ss_pred cCCeEECCEEcc-e-EECCC------C--CEEEECCEEEEE
Confidence 478899999886 2 22222 2 278999865544
No 104
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=21.59 E-value=30 Score=33.24 Aligned_cols=13 Identities=15% Similarity=-0.031 Sum_probs=11.5
Q ss_pred CCCCCccccCCCC
Q psy938 16 SESGEKFGKSARN 28 (241)
Q Consensus 16 g~dG~KmsKS~gn 28 (241)
+.+|+|||||.||
T Consensus 262 n~~g~KLSKR~~~ 274 (553)
T 1qtq_A 262 NLEYTVMSKRKLN 274 (553)
T ss_dssp CBTTSCCCHHHHH
T ss_pred cCCCccccccccc
Confidence 6799999999976
No 105
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=20.15 E-value=69 Score=26.92 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=25.6
Q ss_pred hCCeEEccEEecCCCCccC-CCCcccCCCeEEEEeccccEEEE
Q psy938 171 EGGFYVNYKKVQNPQEVLS-PSAHILPNSLTLLRVEVSANIIA 212 (241)
Q Consensus 171 qGgV~VNg~~v~d~~~~l~-~~~~~~~~~~~llr~GKk~~~~i 212 (241)
+|.|||||++++++. .+. ..+.+.-++ +.+++.+..+.++
T Consensus 134 ngtvyvNg~~i~~~~-~L~~~GD~I~ig~-~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 134 NTDVYINYELQEQLT-NKAYIGDHIYVEG-IWLEVQADGLNVL 174 (238)
T ss_dssp TCCEEETTEECCSSE-EEEETTCEEEETT-EEEEECSSEEEEE
T ss_pred CCCEEECCEEeccce-eccCCcCEEEECC-EEEEEECCEEEEE
Confidence 566999999998765 455 554443344 4666666665553
No 106
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=20.10 E-value=1.3e+02 Score=22.73 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=20.7
Q ss_pred HhCCeEEccEEecCCCC-ccCCCCcccCCCeEEEEecccc-EEEE
Q psy938 170 SEGGFYVNYKKVQNPQE-VLSPSAHILPNSLTLLRVEVSA-NIIA 212 (241)
Q Consensus 170 ~qGgV~VNg~~v~d~~~-~l~~~~~~~~~~~~llr~GKk~-~~~i 212 (241)
+.+|.+|||+++..... .+. +|. +|+.|.-. .|++
T Consensus 92 StNGT~vNg~ri~~~~~~~L~------~GD--~I~~G~str~yvl 128 (130)
T 4h87_A 92 STHGTFLNKTRIPPRTYCRVH------VGH--VVRFGGSTRLFIL 128 (130)
T ss_dssp CSSCEEETTEECCTTCCEECC------TTC--EEEETTCSEEEEE
T ss_pred CCCceEECCEECCCCceeECC------CCC--EEEECCceEEEEE
Confidence 35899999999864321 122 222 68899733 3443
Done!