RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy938
(241 letters)
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 94.8 bits (235), Expect = 1e-23
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G+KFGKS A+WLD++ +S +E YQ+ I D +V LK F+F
Sbjct: 217 GLTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKE 276
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALY 114
I+ ++ P R AQK LAE++T +HGE+ L A +QAL+
Sbjct: 277 EIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRISQALF 323
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 93.6 bits (232), Expect = 3e-23
Identities = 46/103 (44%), Positives = 63/103 (61%)
Query: 8 GLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSLA 67
GLT P++ G KFGK+ IWLD + +S +E YQ+ I T D +V LK F+F S
Sbjct: 217 GLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276
Query: 68 AIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAKLAT 110
IE +++ PE+R AQK LAE++T LVHGEE L+ A +
Sbjct: 277 EIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQAIRIS 319
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 58.5 bits (140), Expect = 1e-10
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 7 GGLTTPIIESESGEKFGKSARNAIWLDSKLSSSFELYQYLIRTKDSEVYDLLKLFSFDSL 66
L ++ + EK KS N I L +++ L+R D + +L +
Sbjct: 214 CFLMPLLVGLDGREKMSKSLDNYIGLTEP---PEAMFKKLMRVPDPLLPSYFRLLTDLEE 270
Query: 67 AAIEDFKRQNEHKPEERRAQKKLAEDLTLLVHGEEGLKSAKLATQALY 114
IE + A + LA LT + +A Y
Sbjct: 271 EEIEALLKAG-----PVPAHRVLARLLTAAYALPQ---IPPRIDRAFY 310
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 48.6 bits (116), Expect = 2e-08
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 112 ALYSQDLDSLGSLNATDASRIFPGARIVELLMEPGMSMLELSLATKCFPRDKEANLTISE 171
AL+S D+ +L A + + F + ++EL ++ P ++A I
Sbjct: 1 ALFSGDIANL---TAAEIEQGFKDVPSFVHEGG-DVPLVELLVSAGISPSKRQAREDIQN 56
Query: 172 GGFYVNYKKVQNPQEVLSPSAHILPNSLTLLRV 204
G YVN +++Q+ +L+ H L T++R
Sbjct: 57 GAIYVNGERLQDVGAILTAE-HRLEGRFTVIRR 88
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 35.9 bits (83), Expect = 4e-04
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 140 ELLMEPGMSMLELSLATKCFPRDKEANLTISEGGFYVNYKKVQNPQEVLSPSAHIL 195
L E + + L P + EA I G ++ + + +P + S +
Sbjct: 11 SELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRI 66
>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 167
Score = 27.4 bits (61), Expect = 0.93
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 52 SEVYDLLKLFSFDSLAAIEDFKRQNEHKPE---ERRAQKKLAEDLTLLVHGEEGLKSAKL 108
+EV DL F+ D+ + + E ERR+ KL EDL V G L
Sbjct: 3 AEVRDLD--FANDASKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVL 60
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 27.9 bits (61), Expect = 1.2
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 19 GEKFGKSARNAIWLDSKLS--SSFELYQYLIRTKDSEVYDLLKLFSFDSLAA 68
G K KS I + L+ + L Y S + D+ + +
Sbjct: 292 GAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDI--DLNLEDFVQ 341
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 27.3 bits (59), Expect = 2.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 19 GEKFGKSARNAIWLD 33
G+KF S AIW+
Sbjct: 307 GKKFSTSRNWAIWVH 321
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 27.3 bits (59), Expect = 2.0
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 17 ESGEKFGKSARNAIWLDSKL 36
G K K+ N + + L
Sbjct: 293 PDGRKMSKTLGNVVDPFALL 312
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 26.8 bits (58), Expect = 2.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 9 LTTPIIESESGEKFGKSARNAIWLD 33
L ++ E G+K KS N I
Sbjct: 363 LLHGLVLDEKGQKMSKSKGNVIDPL 387
>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296
{Legionella pneumophila [TaxId: 446]}
Length = 271
Score = 26.4 bits (58), Expect = 3.4
Identities = 8/78 (10%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 103 LKSAKLATQALYSQDLDSLGSLNATDASRIFPGA-RIVELLMEPGMSML-------ELSL 154
+ + +L+ + + + +N +PG+ + + E +
Sbjct: 60 VWLDRENLPSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNF 119
Query: 155 ATKCFPRDKEANLTISEG 172
K +K+ + ++G
Sbjct: 120 LLKLPHFNKKVYVNHTDG 137
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 26.5 bits (57), Expect = 3.6
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 9 LTTPIIESESGEKFGKSARNAIWLD 33
+ +I E G+K KS N +
Sbjct: 390 ICHGLILDEKGQKMSKSKGNVVDPW 414
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 26.1 bits (56), Expect = 4.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 9 LTTPIIESESGEKFGKSARNAIWLD 33
L+ + G+K KS N I D
Sbjct: 389 LSHGFVMDGEGKKMSKSLGNVIVPD 413
>d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus
subtilis [TaxId: 1423]}
Length = 108
Score = 24.0 bits (52), Expect = 9.1
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 63 FDSLAAIEDFKRQNEHKPEERRAQKK 88
+DS+ AI ++ EH + A++K
Sbjct: 63 WDSMDAINHWRHHTEH----QAAKEK 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.356
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 796,340
Number of extensions: 33383
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 16
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)