Query psy9380
Match_columns 195
No_of_seqs 123 out of 1204
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:38:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 6.8E-72 1.5E-76 478.9 14.6 183 1-183 1-183 (443)
2 PLN00221 tubulin alpha chain; 100.0 8.7E-60 1.9E-64 423.9 14.0 183 1-183 1-185 (450)
3 KOG1374|consensus 100.0 3E-59 6.6E-64 401.4 13.5 182 1-183 2-186 (448)
4 PTZ00335 tubulin alpha chain; 100.0 8.5E-59 1.8E-63 417.3 14.8 183 1-183 1-185 (448)
5 PLN00220 tubulin beta chain; P 100.0 1.7E-57 3.6E-62 409.3 15.1 183 1-183 1-183 (447)
6 PLN00222 tubulin gamma chain; 100.0 3.2E-56 7E-61 401.0 14.5 182 1-183 2-186 (454)
7 cd02188 gamma_tubulin Gamma-tu 100.0 3.5E-56 7.6E-61 398.7 13.7 181 2-183 1-184 (431)
8 PTZ00010 tubulin beta chain; P 100.0 5.9E-56 1.3E-60 398.9 14.6 183 1-183 1-183 (445)
9 cd02186 alpha_tubulin The tubu 100.0 1.8E-55 3.8E-60 394.8 13.9 182 2-183 1-184 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 2.3E-55 4.9E-60 396.1 14.3 175 1-183 1-183 (465)
11 cd02187 beta_tubulin The tubul 100.0 3E-54 6.4E-59 386.1 15.6 182 2-183 1-182 (425)
12 cd02189 delta_tubulin The tubu 100.0 1.1E-52 2.4E-57 377.9 13.2 175 4-183 2-178 (446)
13 KOG1376|consensus 100.0 9.9E-51 2.2E-55 347.5 8.1 182 1-183 1-184 (407)
14 cd02190 epsilon_tubulin The tu 100.0 4.7E-49 1E-53 348.0 12.2 151 2-183 1-151 (379)
15 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.3E-45 2.8E-50 303.5 7.2 166 3-172 1-166 (216)
16 cd06059 Tubulin The tubulin su 100.0 4.4E-41 9.6E-46 297.6 12.2 142 3-183 1-142 (382)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3.7E-37 8.1E-42 267.3 10.8 135 3-176 1-135 (328)
18 cd06060 misato Human Misato sh 100.0 1.7E-36 3.7E-41 274.5 13.0 166 2-174 1-194 (493)
19 KOG2530|consensus 100.0 5.8E-32 1.3E-36 237.0 9.0 170 1-174 1-247 (483)
20 smart00864 Tubulin Tubulin/Fts 99.9 3.5E-25 7.7E-30 179.1 5.8 115 49-171 3-122 (192)
21 KOG1375|consensus 99.9 2.2E-23 4.8E-28 179.5 5.8 123 41-183 5-127 (369)
22 cd02202 FtsZ_type2 FtsZ is a G 99.8 7.1E-19 1.5E-23 154.3 11.7 135 1-175 1-142 (349)
23 PF14881 Tubulin_3: Tubulin do 99.7 5.8E-18 1.3E-22 135.9 7.3 90 82-172 17-116 (180)
24 PF10644 Misat_Tub_SegII: Misa 99.6 4.5E-16 9.7E-21 116.5 4.3 67 2-74 1-71 (115)
25 cd02191 FtsZ FtsZ is a GTPase 99.4 3E-12 6.5E-17 110.5 10.4 127 4-183 3-134 (303)
26 cd02201 FtsZ_type1 FtsZ is a G 99.2 1.4E-10 3.1E-15 100.1 9.0 125 4-176 3-127 (304)
27 TIGR00065 ftsZ cell division p 99.1 2E-10 4.4E-15 100.9 9.7 125 4-181 20-149 (349)
28 PRK13018 cell division protein 99.0 3.5E-09 7.6E-14 93.9 9.7 119 4-173 31-154 (378)
29 PRK09330 cell division protein 98.8 4E-08 8.6E-13 87.4 9.0 122 3-177 15-141 (384)
30 COG0206 FtsZ Cell division GTP 97.1 0.0037 8.1E-08 54.9 9.7 63 107-174 76-138 (338)
31 PF13809 Tubulin_2: Tubulin li 97.0 0.0091 2E-07 52.5 10.8 81 93-173 101-195 (345)
32 PRK14484 phosphotransferase ma 74.4 2.4 5.1E-05 32.1 2.0 41 114-158 42-83 (124)
33 PF12953 DUF3842: Domain of un 68.7 5.4 0.00012 30.4 2.8 29 141-169 6-35 (131)
34 PLN02408 phospholipase A1 65.2 7.7 0.00017 34.7 3.6 71 111-185 179-251 (365)
35 PF03610 EIIA-man: PTS system 62.4 9 0.0002 27.9 3.0 31 113-143 40-70 (116)
36 TIGR00824 EIIA-man PTS system, 61.9 24 0.00053 25.9 5.3 32 113-144 41-72 (116)
37 cd00741 Lipase Lipase. Lipase 59.2 14 0.0003 27.9 3.7 54 103-160 1-54 (153)
38 PLN02847 triacylglycerol lipas 56.1 12 0.00026 35.7 3.3 62 103-168 224-287 (633)
39 cd00519 Lipase_3 Lipase (class 53.4 15 0.00033 29.6 3.2 70 102-176 100-169 (229)
40 cd00006 PTS_IIA_man PTS_IIA, P 51.9 20 0.00043 26.3 3.4 49 113-165 40-88 (122)
41 PF13508 Acetyltransf_7: Acety 47.8 21 0.00046 23.5 2.7 35 129-166 28-62 (79)
42 PF01764 Lipase_3: Lipase (cla 43.9 8 0.00017 28.4 0.1 73 104-181 37-112 (140)
43 COG0572 Udk Uridine kinase [Nu 40.8 31 0.00068 28.6 3.2 27 135-162 9-35 (218)
44 PF13552 DUF4127: Protein of u 38.9 44 0.00096 31.0 4.2 32 152-183 94-126 (497)
45 TIGR02364 dha_pts dihydroxyace 36.5 30 0.00066 26.0 2.3 39 115-156 43-83 (125)
46 PF02353 CMAS: Mycolic acid cy 35.9 52 0.0011 28.0 3.9 51 99-151 29-80 (273)
47 COG4053 Uncharacterized protei 34.5 63 0.0014 26.5 3.9 59 112-173 67-125 (244)
48 PRK15088 PTS system mannose-sp 33.8 1E+02 0.0022 27.0 5.4 32 113-144 42-73 (322)
49 PTZ00010 tubulin beta chain; P 31.3 22 0.00047 32.5 0.9 66 4-69 135-205 (445)
50 COG1086 Predicted nucleoside-d 28.7 37 0.00081 32.2 1.9 31 130-163 248-278 (588)
51 PF13019 Telomere_Sde2: Telome 28.0 44 0.00096 26.4 2.0 24 129-153 75-98 (162)
52 PRK09461 ansA cytoplasmic aspa 28.0 95 0.0021 27.2 4.3 59 110-174 65-123 (335)
53 PF06908 DUF1273: Protein of u 27.8 86 0.0019 25.0 3.7 58 112-176 27-84 (177)
54 PF01713 Smr: Smr domain; Int 26.7 1.7E+02 0.0036 19.6 4.6 50 117-169 12-67 (83)
55 PF12532 DUF3732: Protein of u 26.6 2.1E+02 0.0045 23.1 5.7 12 57-68 97-108 (193)
56 COG2518 Pcm Protein-L-isoaspar 25.7 39 0.00085 27.8 1.4 18 140-157 78-95 (209)
57 PF06858 NOG1: Nucleolar GTP-b 24.0 2.1E+02 0.0046 18.6 4.3 39 129-167 12-53 (58)
58 COG3969 Predicted phosphoadeno 24.0 2.4E+02 0.0052 25.4 5.9 48 109-161 9-56 (407)
59 cd02960 AGR Anterior Gradient 23.5 57 0.0012 24.7 1.8 22 56-77 76-97 (130)
60 KOG3178|consensus 23.4 56 0.0012 29.0 2.0 40 123-167 168-207 (342)
61 PF09370 TIM-br_sig_trns: TIM- 23.2 45 0.00097 28.6 1.3 32 115-154 2-33 (268)
62 cd04265 DUF619-NAGS-U DUF619 d 22.7 72 0.0016 23.0 2.1 21 141-161 45-65 (99)
63 PF02879 PGM_PMM_II: Phosphogl 22.1 91 0.002 21.8 2.6 28 130-157 19-46 (104)
64 PF15232 DUF4585: Domain of un 22.1 90 0.0019 21.5 2.3 30 60-89 6-38 (75)
65 PF08659 KR: KR domain; Inter 21.7 57 0.0012 25.4 1.6 30 139-169 5-34 (181)
66 COG2833 Uncharacterized protei 21.4 52 0.0011 27.8 1.3 21 15-35 207-227 (268)
67 TIGR02153 gatD_arch glutamyl-t 21.3 1.3E+02 0.0029 27.2 4.0 59 111-174 123-181 (404)
68 PRK05537 bifunctional sulfate 20.7 1.5E+02 0.0032 28.1 4.3 53 119-175 205-262 (568)
69 COG2159 Predicted metal-depend 20.7 1.2E+02 0.0027 25.9 3.6 48 119-166 145-197 (293)
70 PF03141 Methyltransf_29: Puta 20.3 1.3E+02 0.0029 28.1 3.8 25 129-154 114-138 (506)
71 TIGR01732 tiny_TM_bacill conse 20.3 74 0.0016 17.4 1.3 13 140-152 1-13 (26)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=6.8e-72 Score=478.86 Aligned_cols=183 Identities=57% Similarity=1.083 Sum_probs=179.8
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCC
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGP 80 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~ 80 (195)
|||||+||+||||||||++||+++|.||||+++|.+++.++.+.++.++||+|++.+||+||||+|||||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999888777777899999999999999999999999999999999999
Q ss_pred CccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcC
Q psy9380 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP 160 (195)
Q Consensus 81 ~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~ 160 (195)
|+.+|+|+|++++|+|||||||+|+|+.|+++.+.++|+|||++|.||.||||+++||++|||||||||.||++|++|||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEecCCCCCCcccccc
Q psy9380 161 DRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 161 k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
||.+.+|+|||+|++|++|||||
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePY 183 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPY 183 (443)
T ss_pred hhheeEEEeccCCccCcceeccc
Confidence 99999999999999999999998
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=8.7e-60 Score=423.90 Aligned_cols=183 Identities=42% Similarity=0.778 Sum_probs=172.1
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCc--hhhccccceeeccCCCccccceEEecCCCCeeecccc
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRS 78 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~--~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~ 78 (195)
|||||+||+||||||||.+||+++|.||+++++|.+..++. ...+.+++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643322 2345678999999999999999999999999999999
Q ss_pred CCCccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158 (195)
Q Consensus 79 ~~~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de 158 (195)
++++++|+|++++++++|+|||||+|||+.|+++.+.++|+||+++|+||+||||+++||++||||||+||+++++|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEecCCCCCCcccccc
Q psy9380 159 YPDRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 159 y~k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
|||+.+.+++|+|++..++++|++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~Y 185 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPY 185 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhh
Confidence 9999999999999988888888876
No 3
>KOG1374|consensus
Probab=100.00 E-value=3e-59 Score=401.36 Aligned_cols=182 Identities=39% Similarity=0.837 Sum_probs=171.0
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCC
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGP 80 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~ 80 (195)
|+||||||+||||||||.+||+.+|+||||.++|.+.++.+.+.++.++||++..++.|+||||+|||||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 68999999999999999999999999999999999887777777888999999999999999999999999999999999
Q ss_pred CccccCCCceeecc--CCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380 81 FGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158 (195)
Q Consensus 81 ~~~lf~p~~~~~~~--~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de 158 (195)
|+++|+|+|+...+ .|||||||.||.. |+.+.|+|+|.|+|++|.||+|.||+++||++||||||+||.++|+|+|+
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~~-G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYSQ-GERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCccccccccccc-chhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 99999999998754 5799999999865 99999999999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEecCCC-CCCcccccc
Q psy9380 159 YPDRIMNTYSVVPSPK-EATADEDAE 183 (195)
Q Consensus 159 y~k~~i~~~~v~P~~~-~~~~v~~~~ 183 (195)
||||.+.+++|||... .+++||.+|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpY 186 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPY 186 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecc
Confidence 9999999999999654 567777665
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=8.5e-59 Score=417.28 Aligned_cols=183 Identities=41% Similarity=0.811 Sum_probs=171.6
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCc--hhhccccceeeccCCCccccceEEecCCCCeeecccc
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRS 78 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~--~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~ 78 (195)
|||||+||+||||||||.+||+++|+||+++++|.+..++. ...+.+++||+|+.+++|+|||||||+||++|++|+.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322 2345678999999999999999999999999999999
Q ss_pred CCCccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158 (195)
Q Consensus 79 ~~~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de 158 (195)
++++.+|+|++++++++|+|||||+|||+.|+++.++++|+||+++|+||+||||+++||++||||||+||.|+++|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEecCCCCCCcccccc
Q psy9380 159 YPDRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 159 y~k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
||++.+++++|+|++..++.++++|
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~Y 185 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPY 185 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeeh
Confidence 9999999999999988778887765
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.7e-57 Score=409.30 Aligned_cols=183 Identities=85% Similarity=1.406 Sum_probs=172.6
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCC
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGP 80 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~ 80 (195)
|||||+||+||||||||.+||++++.||+++++|.+..+++...+.+++||+|+++++|+||||+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999999887755444334567899999999999999999999999999999999
Q ss_pred CccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcC
Q psy9380 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP 160 (195)
Q Consensus 81 ~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~ 160 (195)
++.+|+|++++++++|+|||||+|||+.|+++.+.++|+|||++|+||+||||+++||++||||||+|+.++++|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEecCCCCCCcccccc
Q psy9380 161 DRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 161 k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
++.+++++|+|++..+++++++|
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~y 183 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPY 183 (447)
T ss_pred ccceeeeEEECCCcCCCCccchh
Confidence 99999999999988788888765
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=3.2e-56 Score=400.98 Aligned_cols=182 Identities=36% Similarity=0.769 Sum_probs=168.1
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCC
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGP 80 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~ 80 (195)
|||||+||+||||||||.+||+++|+||+++++|.+..+++...+..++||+|+++++|+|||||||+||++|++|+.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999999987754444345678899999999999999999999999999999999
Q ss_pred CccccCCCceeeccC--CCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380 81 FGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158 (195)
Q Consensus 81 ~~~lf~p~~~~~~~~--~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de 158 (195)
++++|+|++++++++ |+|||||+||+ .|+++.+.++|+||+++|+||++|||+++||++||||||+|+.++++|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 999999999999996 69999999965 799999999999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEecCCC-CCCcccccc
Q psy9380 159 YPDRIMNTYSVVPSPK-EATADEDAE 183 (195)
Q Consensus 159 y~k~~i~~~~v~P~~~-~~~~v~~~~ 183 (195)
||++.+++++|+|++. .+++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~Y 186 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPY 186 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeec
Confidence 9999999999999864 567777765
No 7
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=3.5e-56 Score=398.69 Aligned_cols=181 Identities=41% Similarity=0.865 Sum_probs=167.8
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCC
Q psy9380 2 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPF 81 (195)
Q Consensus 2 ~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~ 81 (195)
||||+||+||||||||.+||++++.||+++++|.+..+++...+.+++||+|+++++|+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999999877554433456789999999999999999999999999999999999
Q ss_pred ccccCCCceeeccC--CCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHc
Q psy9380 82 GQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 159 (195)
Q Consensus 82 ~~lf~p~~~~~~~~--~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey 159 (195)
+.+|+|++++.+++ |+|||||+||+ .|+++.++++|+||+++|+||++|||+++||++||||||+||.|+++|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 99999999999997 99999999965 6999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEEEecCCCC-CCcccccc
Q psy9380 160 PDRIMNTYSVVPSPKE-ATADEDAE 183 (195)
Q Consensus 160 ~k~~i~~~~v~P~~~~-~~~v~~~~ 183 (195)
||+.+++++|+|++.. +++++++|
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~Y 184 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPY 184 (431)
T ss_pred CcceeeeEEecCCCccCCCccceec
Confidence 9999999999998764 57777765
No 8
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=5.9e-56 Score=398.85 Aligned_cols=183 Identities=85% Similarity=1.413 Sum_probs=172.4
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCC
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGP 80 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~ 80 (195)
|||||+||+||||||||.+||++++.||+++++|.+..+++...++.++||+|++.++|+||||+||+||++|++++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999999987654443334567899999999999999999999999999999999
Q ss_pred CccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcC
Q psy9380 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP 160 (195)
Q Consensus 81 ~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~ 160 (195)
++.+|+|++++++++|+|||||+|||..|+++.+.++|+||+++|+||++|||+++||++||||||+|+.++++|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEecCCCCCCcccccc
Q psy9380 161 DRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 161 k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
|+.+++++|+|++..++.++++|
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~Y 183 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPY 183 (445)
T ss_pred ccceeeeEecCCcccCccchhhh
Confidence 99999999999988778888776
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.8e-55 Score=394.83 Aligned_cols=182 Identities=43% Similarity=0.802 Sum_probs=170.2
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCc--hhhccccceeeccCCCccccceEEecCCCCeeeccccC
Q psy9380 2 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSG 79 (195)
Q Consensus 2 ~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~--~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~ 79 (195)
||||+||+||||||||.+||+++++||+++++|.+..++. ...+.+++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987654332 23467899999999999999999999999999999998
Q ss_pred CCccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHc
Q psy9380 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 159 (195)
Q Consensus 80 ~~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey 159 (195)
+++.+|+|++++.+++++|||||+|||..|+++.++++|+||+++|+||+||||+++||++||||||+||.++++|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEEEecCCCCCCcccccc
Q psy9380 160 PDRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 160 ~k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
||+++++++|+|++..+++++++|
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~Y 184 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPY 184 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeeh
Confidence 999999999999987777777765
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=2.3e-55 Score=396.15 Aligned_cols=175 Identities=40% Similarity=0.747 Sum_probs=162.0
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcC-CCCCCCcCCCCchhhccccceeeccC-----CC--ccccceEEecCCCCe
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHG-IDPTGAYHGDSDLQLERINVYYNEAS-----GS--KYVPRAILVDLEPGT 72 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~-i~~~g~~~~~~~~~~~~~~~~f~e~~-----~~--~~~PRai~vDle~~~ 72 (195)
|||||+||+||||||||.+||+++|.||+ ++++|.+ ++.+++||++.+ .+ +|+|||||||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777754 346789998532 23 499999999999999
Q ss_pred eeccccCCCccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHH
Q psy9380 73 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 152 (195)
Q Consensus 73 i~~i~~~~~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~ll 152 (195)
|++|+.++++.+|+|++++++++|+||||++|||..|+++.+.++|+||+++|+||.||||+++||++||||||+|+.++
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHcCCccceEEEEecCCCCCCcccccc
Q psy9380 153 SKIREEYPDRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 153 e~L~dey~k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
++|+|+||++.+++++|+|+. .++.++++|
T Consensus 154 e~l~d~y~~~~~~~~~V~P~~-~~~~vv~pY 183 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPSA-VDDVITSPY 183 (465)
T ss_pred HHHHHhcccCceeeeEecCCC-CCcceeccc
Confidence 999999999999999999975 567777765
No 11
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3e-54 Score=386.08 Aligned_cols=182 Identities=89% Similarity=1.428 Sum_probs=169.8
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCC
Q psy9380 2 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPF 81 (195)
Q Consensus 2 ~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~ 81 (195)
||||+||+||||||||.+||+++|.||+++++|.+...++...+..++||+|+++++|+||||+||+||+++++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999998876443333335678999999999999999999999999999999998
Q ss_pred ccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCC
Q psy9380 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 161 (195)
Q Consensus 82 ~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k 161 (195)
+.+|+|++++.+++++|||||+|||..|+++.++++|+||+++|+||++|||+++||++||||||+|+.++++|+|+|||
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEecCCCCCCcccccc
Q psy9380 162 RIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 162 ~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
+.+++++|+|++..++.++++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~Y 182 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPY 182 (425)
T ss_pred cceEEEEEecCCCcCcceeeeh
Confidence 9999999999988777777765
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=1.1e-52 Score=377.85 Aligned_cols=175 Identities=34% Similarity=0.683 Sum_probs=161.2
Q ss_pred EEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCc-
Q psy9380 4 IVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFG- 82 (195)
Q Consensus 4 iI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~- 82 (195)
||+||+||||||||.+||+++++||+++++|.+. ...+.+++||+|..+++|+||||+||+||++|++++.++++
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998887643 12456789999999999999999999999999999987644
Q ss_pred -cccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCC
Q psy9380 83 -QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 161 (195)
Q Consensus 83 -~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k 161 (195)
++|+|++++++++|+|||||+|||+.|+++.++++|+||+++|+||+++||+++||++||||||+|+.++++|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEecCCCCCCcccccc
Q psy9380 162 RIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 162 ~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
+.+.+++|+|+. .++.++++|
T Consensus 158 ~~~~~~~v~P~~-~~~~~v~~y 178 (446)
T cd02189 158 SLLLNIVVWPYT-TGEVIVQNY 178 (446)
T ss_pred cceeeeeccCCC-CCcchhhhh
Confidence 999999999965 566666544
No 13
>KOG1376|consensus
Probab=100.00 E-value=9.9e-51 Score=347.48 Aligned_cols=182 Identities=44% Similarity=0.822 Sum_probs=175.4
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCch--hhccccceeeccCCCccccceEEecCCCCeeecccc
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRS 78 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~--~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~ 78 (195)
|||||+||+||+|.|||+++|+++|.||+|+++|.++++++. ..+++++||.++..++++||++||||||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999999875543 34478999999999999999999999999 999999
Q ss_pred CCCccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158 (195)
Q Consensus 79 ~~~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de 158 (195)
|+|+.+|||++++++|++++||||+|+|+.|+++.+..+++||+.++.|..||||.++||.+||||||++|.++++|..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEecCCCCCCcccccc
Q psy9380 159 YPDRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 159 y~k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
|+||..+.++++|+++.|.+++|||
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePy 184 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPY 184 (407)
T ss_pred hhhccccccccccCccccccccCCc
Confidence 9999999999999999999999985
No 14
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=4.7e-49 Score=347.97 Aligned_cols=151 Identities=44% Similarity=0.807 Sum_probs=145.7
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCC
Q psy9380 2 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPF 81 (195)
Q Consensus 2 ~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~ 81 (195)
||||+||+||||||||.+||++++.|| |+||||+||+||++|++++.+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 799999999999999999999999998 68999999999999999999999
Q ss_pred ccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCC
Q psy9380 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 161 (195)
Q Consensus 82 ~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k 161 (195)
+++|+|++++.+++|+||||++||+..|+++.++++|+||+++|+||.||||+++||++||||||+|+.++++|+|+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEecCCCCCCcccccc
Q psy9380 162 RIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 162 ~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
+.+++++|+|++. ++.++++|
T Consensus 131 ~~~~~~~v~P~~~-~~~~v~~y 151 (379)
T cd02190 131 VYRFVTSVYPSAD-DDVITSPY 151 (379)
T ss_pred cceEEEeecCCCC-CCceeccc
Confidence 9999999999885 77777776
No 15
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.3e-45 Score=303.54 Aligned_cols=166 Identities=49% Similarity=0.970 Sum_probs=155.7
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCc
Q psy9380 3 EIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFG 82 (195)
Q Consensus 3 EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~ 82 (195)
|||+||+||||||||.+||++++.||+++++.. ......+.++||++...++|+||+|+||+|++++++++..+.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~----~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSK----SQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSS----SSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccc----cccccccccceeeeccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999988721 2234556789999999999999999999999999999988888
Q ss_pred cccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCc
Q psy9380 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDR 162 (195)
Q Consensus 83 ~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~ 162 (195)
.+|+|++++.+++|++|||++||+..|+++.+.++|+||+++|+||.+++|++++|++||||||+++.++++|+++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecC
Q psy9380 163 IMNTYSVVPS 172 (195)
Q Consensus 163 ~i~~~~v~P~ 172 (195)
++++++|+|+
T Consensus 157 ~~~~~~ilP~ 166 (216)
T PF00091_consen 157 PIISFSILPF 166 (216)
T ss_dssp EEEEEEEE-C
T ss_pred ceeecccccc
Confidence 9999999998
No 16
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=4.4e-41 Score=297.56 Aligned_cols=142 Identities=53% Similarity=1.049 Sum_probs=135.9
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCc
Q psy9380 3 EIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFG 82 (195)
Q Consensus 3 EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~ 82 (195)
|||+||+||||||||.+||+++ |+||+||+++++++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999986 9999999999999998888
Q ss_pred cccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCc
Q psy9380 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDR 162 (195)
Q Consensus 83 ~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~ 162 (195)
.+|+|++++++++++||||++||+..|+++.++++|+||+++|+||.+|||+++||++||||||+|+.++|+|+|+|||+
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCCCCCCcccccc
Q psy9380 163 IMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 163 ~i~~~~v~P~~~~~~~v~~~~ 183 (195)
.+++++|+|++...+++++++
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~y 142 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPY 142 (382)
T ss_pred ceEeEEEeccCccCCccccch
Confidence 999999999987666666665
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3.7e-37 Score=267.30 Aligned_cols=135 Identities=56% Similarity=1.017 Sum_probs=129.2
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCc
Q psy9380 3 EIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFG 82 (195)
Q Consensus 3 EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~ 82 (195)
|||+||+||||||||++||+++ |+||+|+++++.++..+++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999864 9999999999999988888
Q ss_pred cccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCc
Q psy9380 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDR 162 (195)
Q Consensus 83 ~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~ 162 (195)
.+|++.+++++++|+||||++||+..++++.++++|+||+++|+||++|||+++||++||||||+++.++++|+|+|||+
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCCCCC
Q psy9380 163 IMNTYSVVPSPKEA 176 (195)
Q Consensus 163 ~i~~~~v~P~~~~~ 176 (195)
++++++|+|++...
T Consensus 122 ~~~~~~v~P~~~~~ 135 (328)
T cd00286 122 LKITFSILPGPDEG 135 (328)
T ss_pred ceeEEEecCCCCCc
Confidence 99999999987644
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.7e-36 Score=274.52 Aligned_cols=166 Identities=24% Similarity=0.399 Sum_probs=135.2
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccC----CCccccceEEecCCCCeeeccc
Q psy9380 2 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAS----GSKYVPRAILVDLEPGTMDSVR 77 (195)
Q Consensus 2 ~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~----~~~~~PRai~vDle~~~i~~i~ 77 (195)
|||||||+||++|+||+||||+|+..+...+++.. ...+++++||++. ..+|+||+|++|+++++..--+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~------~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPA------SELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCcc------ccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 79999999999999999999999998876655421 2346789999854 6689999999999998754322
Q ss_pred cCC---------------C-ccccCCCceeecc-----CCCCccCCCCCcc---cchhhhHHHHHHhhhhhhccccccce
Q psy9380 78 SGP---------------F-GQIFRPDNFVFGQ-----SGAGNNWAKGHYT---EGAELVDSVLDVVRKEAESCDCLQGF 133 (195)
Q Consensus 78 ~~~---------------~-~~lf~p~~~~~~~-----~~s~nn~a~G~~~---~g~~~~~~~~d~iR~~~E~cD~lqgf 133 (195)
.+. | +..|||++++..+ .+..++|+.|+-. .+.+..++++|+||+++|+||.||||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 221 1 3459999998653 3455666655433 24457788999999999999999999
Q ss_pred eeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCCC
Q psy9380 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174 (195)
Q Consensus 134 ~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~~ 174 (195)
++++|++||| ||||+.++|+|+|||||+.+++++++|.+.
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~ 194 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIP 194 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcc
Confidence 9999999999 799999999999999999999999999754
No 19
>KOG2530|consensus
Probab=99.97 E-value=5.8e-32 Score=237.00 Aligned_cols=170 Identities=27% Similarity=0.463 Sum_probs=127.9
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccC----CCccccceEEecCCCCeeec-
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAS----GSKYVPRAILVDLEPGTMDS- 75 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~----~~~~~PRai~vDle~~~i~~- 75 (195)
||||+|||+|+.+|.+|+||||+|...+++.++-..+.... ..+ +++|+.+. ..+|+||+|++|++..+...
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~~--~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~ 77 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGEL--CPN-DVLYRTGRTDHGQITYTPRLLLVDLKGELGTLK 77 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhhc--Ccc-hhhhhccccccCceeeccceeEEecCccccccc
Confidence 99999999999999999999999999998876644322111 112 78998864 45899999999999876421
Q ss_pred -----------------------cccCC-------------------------------------------CccccCCCc
Q psy9380 76 -----------------------VRSGP-------------------------------------------FGQIFRPDN 89 (195)
Q Consensus 76 -----------------------i~~~~-------------------------------------------~~~lf~p~~ 89 (195)
++..+ .+..|||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~t 157 (483)
T KOG2530|consen 78 YQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRT 157 (483)
T ss_pred cchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccc
Confidence 00000 023477777
Q ss_pred eeeccCCCCccCCCCCcccchh------hhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCcc
Q psy9380 90 FVFGQSGAGNNWAKGHYTEGAE------LVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 163 (195)
Q Consensus 90 ~~~~~~~s~nn~a~G~~~~g~~------~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~ 163 (195)
+.-.+..--|.-|.+-|..|.+ +.+++.|+||.++|+||.||||+++.++.+||| ||++.+++.|+|||+++.
T Consensus 158 l~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 158 LNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKA 236 (483)
T ss_pred cccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCc
Confidence 6543321111112334444544 567789999999999999999999999999996 999999999999999999
Q ss_pred ceEEEEecCCC
Q psy9380 164 MNTYSVVPSPK 174 (195)
Q Consensus 164 i~~~~v~P~~~ 174 (195)
+++|...|-|.
T Consensus 237 v~tw~~~~~p~ 247 (483)
T KOG2530|consen 237 VFTWGHNPRPF 247 (483)
T ss_pred eeccccCCCCC
Confidence 99999999544
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.91 E-value=3.5e-25 Score=179.13 Aligned_cols=115 Identities=36% Similarity=0.630 Sum_probs=107.2
Q ss_pred ceeeccCCCccccceEEecCCCCeeeccccCCCccccCCCceeeccCCCCccCCCCCcc-----cchhhhHHHHHHhhhh
Q psy9380 49 VYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT-----EGAELVDSVLDVVRKE 123 (195)
Q Consensus 49 ~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~~lf~p~~~~~~~~~s~nn~a~G~~~-----~g~~~~~~~~d~iR~~ 123 (195)
.+|.+ |++.||+|++|+++++++.+..++++..|+|.+.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~---g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGV---GGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEe---CCchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 45655 488999999999999999998888888999999989999999999999998 8999999999999999
Q ss_pred hhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEec
Q psy9380 124 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVP 171 (195)
Q Consensus 124 ~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P 171 (195)
+|.| ++|++++|++||||||+++.+++.++ +||+.. ++++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P 122 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKP 122 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEe
Confidence 9999 99999999999999999999999999 999877 9999999
No 21
>KOG1375|consensus
Probab=99.88 E-value=2.2e-23 Score=179.52 Aligned_cols=123 Identities=89% Similarity=1.403 Sum_probs=113.7
Q ss_pred chhhccccceeeccCCCccccceEEecCCCCeeeccccCCCccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHh
Q psy9380 41 DLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120 (195)
Q Consensus 41 ~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~i 120 (195)
..+..+++++|.+...++|+||+|++||+|++++.++.+++..+|+|++ ++++ +|||+.|..+.+.
T Consensus 5 ~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----- 70 (369)
T KOG1375|consen 5 DLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----- 70 (369)
T ss_pred cceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-----
Confidence 3456789999999999999999999999999999999999999999999 3333 8999999988766
Q ss_pred hhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCCCCCCcccccc
Q psy9380 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 121 R~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
.||+|||||++||++||||||+++.++..|+++||.+...+++++|+++ ++.|++||
T Consensus 71 -----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepy 127 (369)
T KOG1375|consen 71 -----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPY 127 (369)
T ss_pred -----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceeccc
Confidence 8999999999999999999999999999999999999999999999998 88999886
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.79 E-value=7.1e-19 Score=154.32 Aligned_cols=135 Identities=27% Similarity=0.460 Sum_probs=113.9
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCC
Q psy9380 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGP 80 (195)
Q Consensus 1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~ 80 (195)
|+ |..|.+|+||+.|-+++++. ++. .+.+|+||+|+||+++..+++++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~~-----------------------~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DKR-----------------------SGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CCC-----------------------cCCccceeEEEEECCHHHHHhhhc--
Confidence 54 88999999999999999843 110 012578999999999999887654
Q ss_pred CccccCCCceeeccC-----CCCccCCCCCcccchhhhHHHHHHhhhhhhcccc--ccceeeEeecCCCcCCcchHHHHH
Q psy9380 81 FGQIFRPDNFVFGQS-----GAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC--LQGFQLTHSLGGGTGSGMGTLLIS 153 (195)
Q Consensus 81 ~~~lf~p~~~~~~~~-----~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~--lqgf~i~~s~~GGtGSG~~s~lle 153 (195)
...|++++.+++ |++++| ..|+++.++..|.||+.+|.|+. +++|+++++++||||||+++.+++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~-----~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae 121 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADR-----ELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAK 121 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCCh-----HHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHH
Confidence 346888888875 455565 56789999999999999999997 999999999999999999999999
Q ss_pred HhHHHcCCccceEEEEecCCCC
Q psy9380 154 KIREEYPDRIMNTYSVVPSPKE 175 (195)
Q Consensus 154 ~L~dey~k~~i~~~~v~P~~~~ 175 (195)
.++++|+ ++++++.++|+...
T Consensus 122 ~lke~~~-~~~~~iv~~P~~~e 142 (349)
T cd02202 122 ELKERYE-EPVYALGVLPAREE 142 (349)
T ss_pred HHHHhCC-ccEEEEEEecCCCC
Confidence 9999999 88999999998753
No 23
>PF14881 Tubulin_3: Tubulin domain
Probab=99.73 E-value=5.8e-18 Score=135.92 Aligned_cols=90 Identities=26% Similarity=0.447 Sum_probs=69.0
Q ss_pred ccccCCCceeeccCCCCccC--CCCCcccchhhh------HHHHHH-hhhhhhccccccceeeEeecCCCcCCcchHHHH
Q psy9380 82 GQIFRPDNFVFGQSGAGNNW--AKGHYTEGAELV------DSVLDV-VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 152 (195)
Q Consensus 82 ~~lf~p~~~~~~~~~s~nn~--a~G~~~~g~~~~------~~~~d~-iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~ll 152 (195)
+-.|||++++..++...|+. +..-|..|.+.+ ++++|+ ||+++|+||.|||||++.++.+||| ||++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 45689998887665433332 234456666543 345665 9999999999999999999999997 9999999
Q ss_pred HHhHHHcCCccc-eEEEEecC
Q psy9380 153 SKIREEYPDRIM-NTYSVVPS 172 (195)
Q Consensus 153 e~L~dey~k~~i-~~~~v~P~ 172 (195)
++|+|||||+.+ +.+.+.+.
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~ 116 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDP 116 (180)
T ss_pred HHHHHHcCCCceEEeecCCCc
Confidence 999999999996 55555443
No 24
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.61 E-value=4.5e-16 Score=116.52 Aligned_cols=67 Identities=31% Similarity=0.528 Sum_probs=52.6
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccC----CCccccceEEecCCCCeee
Q psy9380 2 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAS----GSKYVPRAILVDLEPGTMD 74 (195)
Q Consensus 2 ~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~----~~~~~PRai~vDle~~~i~ 74 (195)
|||||||+|+.+|+||+||||+|...+..+++.. ....+++++||++. ..+|+||+|++|++.++..
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGs 71 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPDEK------PSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGS 71 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCcccc------CcccCCceEEecccCcCCCeeECCcEEEEecCCCcCc
Confidence 7999999999999999999999976663332221 02346799999863 4589999999999998754
No 25
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.38 E-value=3e-12 Score=110.54 Aligned_cols=127 Identities=25% Similarity=0.335 Sum_probs=96.6
Q ss_pred EEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCcc
Q psy9380 4 IVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQ 83 (195)
Q Consensus 4 iI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~~ 83 (195)
|..|.+|+||+.+-+++++. ++. -.+.+.+|++.+.++.+..
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~~----------------------------~~~~iainTd~~~L~~~~a----- 44 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DKE----------------------------GRSAVAVNTDAQDLLGLEA----- 44 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CCC----------------------------CccEEEEECcHHHHhcCCC-----
Confidence 78899999999999998842 110 0346777777665554331
Q ss_pred ccCCCceeec-----cCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380 84 IFRPDNFVFG-----QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158 (195)
Q Consensus 84 lf~p~~~~~~-----~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de 158 (195)
++.++.+ -.|+|+||.. |++..++.+++||+.+|.||. |+++++++||||||+++.+++.+++.
T Consensus 45 ---~~ki~iG~~~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~ 113 (303)
T cd02191 45 ---ENRVLIGQARTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRI 113 (303)
T ss_pred ---CcEEecCCccccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHh
Confidence 2233333 3588999964 578899999999999999994 99999999999999999999999999
Q ss_pred cCCccceEEEEecCCCCCCcccccc
Q psy9380 159 YPDRIMNTYSVVPSPKEATADEDAE 183 (195)
Q Consensus 159 y~k~~i~~~~v~P~~~~~~~v~~~~ 183 (195)
|+ .+++|+|.|...+.++.++
T Consensus 114 ~~----~~~~vvt~Pf~~Eg~~~~~ 134 (303)
T cd02191 114 GT----LTVAVVTLPFSDEGGIRML 134 (303)
T ss_pred CC----CEEEEEeCCcccCCccchh
Confidence 95 6778888777655555443
No 26
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.16 E-value=1.4e-10 Score=100.13 Aligned_cols=125 Identities=21% Similarity=0.300 Sum_probs=84.7
Q ss_pred EEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCcc
Q psy9380 4 IVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQ 83 (195)
Q Consensus 4 iI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~~ 83 (195)
|..|.+|+||+.+-+.+++. ++ . -...+.+|++...++.++. +.+-
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~--~--------------------------~~~~~a~ntD~~~L~~~~~-~~k~ 48 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL--E--------------------------GVEFIAANTDAQALAKSKA-PNKI 48 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC--C--------------------------CceEEEEECCHHHHhcCCC-CcEE
Confidence 77899999999999998842 11 0 0335666666655444331 1121
Q ss_pred ccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCcc
Q psy9380 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 163 (195)
Q Consensus 84 lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~ 163 (195)
++-++. +.-.|+|++|+.| ++..++..|+||+.+|.||.+ +++++++||||||+++.+.+..+ +|+.
T Consensus 49 ~ig~~~--t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g~-- 115 (304)
T cd02201 49 QLGKEL--TRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMGA-- 115 (304)
T ss_pred EcCCCC--CCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcCC--
Confidence 222211 2335788999754 678888899999999999985 99999999999999888665554 6763
Q ss_pred ceEEEEecCCCCC
Q psy9380 164 MNTYSVVPSPKEA 176 (195)
Q Consensus 164 i~~~~v~P~~~~~ 176 (195)
.+++++|.|...
T Consensus 116 -~~~~vvt~Pf~~ 127 (304)
T cd02201 116 -LTVAVVTKPFSF 127 (304)
T ss_pred -CEEEEEeCCccc
Confidence 455555555433
No 27
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.15 E-value=2e-10 Score=100.95 Aligned_cols=125 Identities=25% Similarity=0.376 Sum_probs=86.9
Q ss_pred EEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCcc
Q psy9380 4 IVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQ 83 (195)
Q Consensus 4 iI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~~ 83 (195)
|..|.+|+||+.+-+.+++. ++. -...+.+|++...++.+.
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~~----------------------------~~~~iainTD~~~L~~~~------ 60 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GVE----------------------------GVEFIAINTDAQHLKTTK------ 60 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC----------------------------ceEEEEEECCHHHHhcCC------
Confidence 78899999999999998753 110 134566666655444332
Q ss_pred ccCCCceeecc-----CCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380 84 IFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158 (195)
Q Consensus 84 lf~p~~~~~~~-----~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de 158 (195)
-++.+..++ .|+|++|+ .|++..++.+|+||+.+|.||.+ +++++++||||||+++.+.+.++ +
T Consensus 61 --a~~ki~iG~~~t~G~GaG~~~~-----~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e 129 (349)
T TIGR00065 61 --ADKKILIGKKLTRGLGAGGNPE-----IGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-E 129 (349)
T ss_pred --CCeEEEcCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-H
Confidence 122333332 47888887 46899999999999999999995 89999999999999885555544 5
Q ss_pred cCCccceEEEEecCCCCCCcccc
Q psy9380 159 YPDRIMNTYSVVPSPKEATADED 181 (195)
Q Consensus 159 y~k~~i~~~~v~P~~~~~~~v~~ 181 (195)
|+ +++++++|.|......++
T Consensus 130 ~~---~l~vaivt~Pf~~Eg~~r 149 (349)
T TIGR00065 130 LG---ALTVAVVTKPFKFEGLKR 149 (349)
T ss_pred cC---CCEEEEEeCCccccchhh
Confidence 64 556666665554444433
No 28
>PRK13018 cell division protein FtsZ; Provisional
Probab=98.96 E-value=3.5e-09 Score=93.93 Aligned_cols=119 Identities=23% Similarity=0.431 Sum_probs=86.3
Q ss_pred EEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCcc
Q psy9380 4 IVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQ 83 (195)
Q Consensus 4 iI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~~ 83 (195)
|..|.+|+||+.+-+++++. ++ .+ ...|.++++.+.++.++.
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~--~~--------------------------v~~iaiNTD~q~L~~~~a----- 72 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI--EG--------------------------AETIAINTDAQHLAMIKA----- 72 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC--CC--------------------------ceEEEEECCHHHHhcCCC-----
Confidence 78899999999999998842 11 00 235666666654443221
Q ss_pred ccCCCceeec-----cCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380 84 IFRPDNFVFG-----QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158 (195)
Q Consensus 84 lf~p~~~~~~-----~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de 158 (195)
|..+..+ -.|+|++|.. |++..++..|.||+.+|.||. |+++++++||||||+++.+++.+++
T Consensus 73 ---~~ki~iG~~~t~G~GaG~dp~~-----G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake- 140 (378)
T PRK13018 73 ---DKKILIGKSLTRGLGAGGDPEV-----GRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE- 140 (378)
T ss_pred ---CcEEecCCccCCCCCCCCChHH-----HHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-
Confidence 2333333 2578888864 577788889999999999998 9999999999999999999999986
Q ss_pred cCCccceEEEEecCC
Q psy9380 159 YPDRIMNTYSVVPSP 173 (195)
Q Consensus 159 y~k~~i~~~~v~P~~ 173 (195)
++ ....++.+.|..
T Consensus 141 ~g-~ltv~vVt~Pf~ 154 (378)
T PRK13018 141 QG-ALVVGVVTKPFK 154 (378)
T ss_pred cC-CCeEEEEEcCcc
Confidence 54 445566677754
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=98.75 E-value=4e-08 Score=87.38 Aligned_cols=122 Identities=26% Similarity=0.407 Sum_probs=87.5
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCCCc
Q psy9380 3 EIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFG 82 (195)
Q Consensus 3 EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~~~ 82 (195)
.|..|.+|.||+.+-+++++. ++ .+ ...|.++++.+.++.++
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~--~~--------------------------v~fia~NTD~q~L~~~~----- 56 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI--QG--------------------------VEFIAANTDAQALLKSK----- 56 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC--CC--------------------------ceEEEEeCcHHHHhcCC-----
Confidence 377899999999999998743 11 00 12455565544433222
Q ss_pred cccCCCceeecc-----CCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHH
Q psy9380 83 QIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE 157 (195)
Q Consensus 83 ~lf~p~~~~~~~-----~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~d 157 (195)
-|..+..++ .|+|++|. .|++..++..+.||+.++.||.+ +++++++||||||.++ ++..+..
T Consensus 57 ---a~~ki~lG~~~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iak 124 (384)
T PRK09330 57 ---APVKIQLGEKLTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAK 124 (384)
T ss_pred ---CCeEEEcCCcccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHH
Confidence 122233332 47888886 67899999999999999999887 8999999999999999 6777777
Q ss_pred HcCCccceEEEEecCCCCCC
Q psy9380 158 EYPDRIMNTYSVVPSPKEAT 177 (195)
Q Consensus 158 ey~k~~i~~~~v~P~~~~~~ 177 (195)
+|+ +++++|+|.|....
T Consensus 125 e~g---~ltvaVvt~PF~fE 141 (384)
T PRK09330 125 ELG---ILTVAVVTKPFSFE 141 (384)
T ss_pred HcC---CcEEEEEecCcccc
Confidence 886 67888887765443
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=97.14 E-value=0.0037 Score=54.92 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=51.2
Q ss_pred ccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCCC
Q psy9380 107 TEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174 (195)
Q Consensus 107 ~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~~ 174 (195)
..|++..++..+.|+..++..| -+.++..++||||+|.++.+.+.+++ ......++.++|...
T Consensus 76 ~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~ 138 (338)
T COG0206 76 EVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF 138 (338)
T ss_pred HHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh
Confidence 4567777777788888877555 67889999999999999999999998 466777788899654
No 31
>PF13809 Tubulin_2: Tubulin like
Probab=96.98 E-value=0.0091 Score=52.50 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=51.6
Q ss_pred ccCCCCccCCCCCccc---chhhhHHHHHHhhhhhh-----cc-ccccceeeEeecCCCcCCcchHHHHHHhHHHc----
Q psy9380 93 GQSGAGNNWAKGHYTE---GAELVDSVLDVVRKEAE-----SC-DCLQGFQLTHSLGGGTGSGMGTLLISKIREEY---- 159 (195)
Q Consensus 93 ~~~~s~nn~a~G~~~~---g~~~~~~~~d~iR~~~E-----~c-D~lqgf~i~~s~~GGtGSG~~s~lle~L~dey---- 159 (195)
...|++..-+.|.... -+++.+.+.+.++..++ .. +.-=-+.|+.|++||||||+--.++-.||+.+
T Consensus 101 ~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~ 180 (345)
T PF13809_consen 101 LSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQPG 180 (345)
T ss_pred hhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhccc
Confidence 3456776666664322 23344444455552111 11 11113678899999999999999999999976
Q ss_pred -CCccceEEEEecCC
Q psy9380 160 -PDRIMNTYSVVPSP 173 (195)
Q Consensus 160 -~k~~i~~~~v~P~~ 173 (195)
....+..+.++|+.
T Consensus 181 ~~~~~i~~~~~lP~~ 195 (345)
T PF13809_consen 181 QDNPRIYGFFVLPDA 195 (345)
T ss_pred CCCceEEEEEECCcc
Confidence 34567788889974
No 32
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=74.42 E-value=2.4 Score=32.10 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=30.4
Q ss_pred HHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHH-HHHhHHH
Q psy9380 114 DSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLL-ISKIREE 158 (195)
Q Consensus 114 ~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~l-le~L~de 158 (195)
+...++|+..+++++. +|..++.++ ||+ =+...+ ++.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gss--p~n~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSA--EMNAEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CCh--HHHHHHHHHhcCCC
Confidence 3456788889999999 999999999 776 355544 5555544
No 33
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=68.69 E-value=5.4 Score=30.42 Aligned_cols=29 Identities=28% Similarity=0.642 Sum_probs=23.4
Q ss_pred CCcCCcchHHHHHHhHHHcCC-ccceEEEE
Q psy9380 141 GGTGSGMGTLLISKIREEYPD-RIMNTYSV 169 (195)
Q Consensus 141 GGtGSG~~s~lle~L~dey~k-~~i~~~~v 169 (195)
+|-|.|+|..+++.||.++|. ..+++...
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 355679999999999999998 66766653
No 34
>PLN02408 phospholipase A1
Probab=65.22 E-value=7.7 Score=34.67 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=47.3
Q ss_pred hhhHHHHHHhhhhhhcccccc-ceeeE-eecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCCCCCCcccccccC
Q psy9380 111 ELVDSVLDVVRKEAESCDCLQ-GFQLT-HSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADEDAEFD 185 (195)
Q Consensus 111 ~~~~~~~d~iR~~~E~cD~lq-gf~i~-~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~~~~~~v~~~~~~ 185 (195)
.+.+++.+.|++.+++...-+ .+.++ ||++|+ ++....-.|+..++..+.+++..|-+|.+-+......++
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~~Fa~~~~ 251 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGNRSFRRQLE 251 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCcccHHHHHHHH
Confidence 356777888888888765322 34455 888754 667777777777776656666777788777665555553
No 35
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=62.44 E-value=9 Score=27.88 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=26.4
Q ss_pred hHHHHHHhhhhhhccccccceeeEeecCCCc
Q psy9380 113 VDSVLDVVRKEAESCDCLQGFQLTHSLGGGT 143 (195)
Q Consensus 113 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGt 143 (195)
.+.+.+++++.+++.+.-+++.++.++.||+
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 4566778888888888999999999999876
No 36
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=61.88 E-value=24 Score=25.87 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=26.0
Q ss_pred hHHHHHHhhhhhhccccccceeeEeecCCCcC
Q psy9380 113 VDSVLDVVRKEAESCDCLQGFQLTHSLGGGTG 144 (195)
Q Consensus 113 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtG 144 (195)
.+++.+++++.+++.+.=+++.++.++-|||-
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45567778888887777789999999999874
No 37
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=59.19 E-value=14 Score=27.86 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=34.5
Q ss_pred CCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcC
Q psy9380 103 KGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP 160 (195)
Q Consensus 103 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~ 160 (195)
+|++...+.+...+...+++...++..-+-+.+=||++|+ ++..+..+|+...+
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~ 54 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGL 54 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccC
Confidence 3556666667777777777766666666666666999865 45555555665533
No 38
>PLN02847 triacylglycerol lipase
Probab=56.10 E-value=12 Score=35.68 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=40.8
Q ss_pred CCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHH--HcCCccceEEE
Q psy9380 103 KGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE--EYPDRIMNTYS 168 (195)
Q Consensus 103 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~d--ey~k~~i~~~~ 168 (195)
+|++...+.+.+.+...|++.+++|...+=+.+=||++||+ ++.+.-.|+. +|++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 45655556677777788888888888766666669999765 4444445554 45555444444
No 39
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=53.41 E-value=15 Score=29.65 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=43.5
Q ss_pred CCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCCCCC
Q psy9380 102 AKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEA 176 (195)
Q Consensus 102 a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~~~~ 176 (195)
.+|++..-..+.+.+...++...+++...+=+..=||++|+ +++.+.-.|+..++... .....|-+|.+.
T Consensus 100 h~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~-i~~~tFg~P~vg 169 (229)
T cd00519 100 HSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSD-VTVYTFGQPRVG 169 (229)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCc-eEEEEeCCCCCC
Confidence 45666666667777777788877777666656666999864 55666666666653322 333444445443
No 40
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=51.89 E-value=20 Score=26.35 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=31.9
Q ss_pred hHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccce
Q psy9380 113 VDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMN 165 (195)
Q Consensus 113 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~ 165 (195)
.+.+.+++++.+++.+.-+++.++.++-|||- ..+...+..++++..++
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp----~n~~~~~~~~~~~~~vi 88 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP----NNAAARLSMEHPPVEVI 88 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH----HHHHHHHHhcCCCEEEE
Confidence 34556777777777777789999999998863 22334444444544433
No 41
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=47.76 E-value=21 Score=23.46 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=23.7
Q ss_pred cccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceE
Q psy9380 129 CLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNT 166 (195)
Q Consensus 129 ~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~ 166 (195)
.+..+.+..+.- |.|+|+.|+..+.+.++++.+..
T Consensus 28 ~i~~~~v~~~~r---g~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 28 YIGYLAVDPEYR---GKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp EEEEEEE-GGGT---TSSHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECHHHc---CCCHHHHHHHHHHHHcCCCcEEE
Confidence 344444444444 45899999999999998776543
No 42
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=43.91 E-value=8 Score=28.39 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=41.9
Q ss_pred CCcccch-hhhHHHHHHhhhhhhccccccceeeE-eecCCCcCCcchHHHHHHhHHHcCC-ccceEEEEecCCCCCCccc
Q psy9380 104 GHYTEGA-ELVDSVLDVVRKEAESCDCLQGFQLT-HSLGGGTGSGMGTLLISKIREEYPD-RIMNTYSVVPSPKEATADE 180 (195)
Q Consensus 104 G~~~~g~-~~~~~~~d~iR~~~E~cD~lqgf~i~-~s~~GGtGSG~~s~lle~L~dey~k-~~i~~~~v~P~~~~~~~v~ 180 (195)
|++..-. ...+.+.+.|++.+++.-. .-+.++ ||++| +++..+.-+|....+. .....+..|-+|.+.+...
T Consensus 37 g~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~itGHSLGG----alA~l~a~~l~~~~~~~~~~~~~~~fg~P~~~~~~~ 111 (140)
T PF01764_consen 37 GFLDAAEDSLYDQILDALKELVEKYPD-YSIVITGHSLGG----ALASLAAADLASHGPSSSSNVKCYTFGAPRVGNSAF 111 (140)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHSTT-SEEEEEEETHHH----HHHHHHHHHHHHCTTTSTTTEEEEEES-S--BEHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccC-ccchhhccchHH----HHHHHHHHhhhhcccccccceeeeecCCccccCHHH
Confidence 4443334 5566777888887777664 445555 88885 4667776777776654 2344445556666544433
Q ss_pred c
Q psy9380 181 D 181 (195)
Q Consensus 181 ~ 181 (195)
.
T Consensus 112 ~ 112 (140)
T PF01764_consen 112 A 112 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=40.76 E-value=31 Score=28.60 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.1
Q ss_pred eEeecCCCcCCcchHHHHHHhHHHcCCc
Q psy9380 135 LTHSLGGGTGSGMGTLLISKIREEYPDR 162 (195)
Q Consensus 135 i~~s~~GGtGSG~~s~lle~L~dey~k~ 162 (195)
++-.++||.|||= +-+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 6678899999998 66788888888855
No 44
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=38.95 E-value=44 Score=31.03 Aligned_cols=32 Identities=16% Similarity=0.485 Sum_probs=24.7
Q ss_pred HHHhHHHcCCccceEEEEec-CCCCCCcccccc
Q psy9380 152 ISKIREEYPDRIMNTYSVVP-SPKEATADEDAE 183 (195)
Q Consensus 152 le~L~dey~k~~i~~~~v~P-~~~~~~~v~~~~ 183 (195)
++.|+..+|+++|..|++.| .+..++.-+||.
T Consensus 94 l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~ 126 (497)
T PF13552_consen 94 LRELKARNPNLPIYAFSTIMRTPPYSSSDEEPD 126 (497)
T ss_pred HHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcH
Confidence 66688999999999999888 565555555554
No 45
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=36.49 E-value=30 Score=25.96 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=28.3
Q ss_pred HHHHHhhhhhhcccc-ccceeeEeecCCCcCCcchH-HHHHHhH
Q psy9380 115 SVLDVVRKEAESCDC-LQGFQLTHSLGGGTGSGMGT-LLISKIR 156 (195)
Q Consensus 115 ~~~d~iR~~~E~cD~-lqgf~i~~s~~GGtGSG~~s-~lle~L~ 156 (195)
.+.++|++.+++++. =+|+.++.++ ||+ =+.+ ..++.+.
T Consensus 43 t~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~ 83 (125)
T TIGR02364 43 TSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLE 83 (125)
T ss_pred chHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhc
Confidence 456778888898866 8999999999 664 3544 3555554
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=35.95 E-value=52 Score=27.98 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=23.4
Q ss_pred ccCCCCCcccchhhhHHHH-HHhhhhhhccccccceeeEeecCCCcCCcchHHH
Q psy9380 99 NNWAKGHYTEGAELVDSVL-DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLL 151 (195)
Q Consensus 99 nn~a~G~~~~g~~~~~~~~-d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~l 151 (195)
-.|+.|||..+.+-+++.. ..+...+|+++-=.| .=+-+++.||| |+.-.+
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~~~~ 80 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLAIYA 80 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHHHHH
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHHHHH
Confidence 3567788877766555544 446777777754444 45556777777 565433
No 47
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.48 E-value=63 Score=26.51 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=43.5
Q ss_pred hhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCC
Q psy9380 112 LVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSP 173 (195)
Q Consensus 112 ~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~ 173 (195)
....+.|.+|+..|.-|.|.|+- .+-. |.|-|++=....--.++|+...++.|-.|-..
T Consensus 67 vN~aifevlr~y~eg~~Dl~GiS--e~pd-gAGEG~SYAeAa~~~seY~Davi~aFDTYggE 125 (244)
T COG4053 67 VNKAIFEVLRKYAEGFDDLRGIS--EDPD-GAGEGLSYAEAASPISEYGDAVIIAFDTYGGE 125 (244)
T ss_pred HHHHHHHHHHHHhhccccccccc--CCCC-cCCCCchHhhhcCchhhcCceEEEEEecccch
Confidence 34457799999999999998853 3444 44667776666666899999999998877643
No 48
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=33.84 E-value=1e+02 Score=27.02 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=25.7
Q ss_pred hHHHHHHhhhhhhccccccceeeEeecCCCcC
Q psy9380 113 VDSVLDVVRKEAESCDCLQGFQLTHSLGGGTG 144 (195)
Q Consensus 113 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtG 144 (195)
.+++.+++++.+++.+.-+|+.++.++-|||-
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45566777777888777789999999999874
No 49
>PTZ00010 tubulin beta chain; Provisional
Probab=31.35 E-value=22 Score=32.50 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=40.1
Q ss_pred EEEEecCchhHHHHHHHHHHHHHhcCCC---CCCCcCCCC--chhhccccceeeccCCCccccceEEecCC
Q psy9380 4 IVHIQAGQCGNQIGAKFWEIISDEHGID---PTGAYHGDS--DLQLERINVYYNEASGSKYVPRAILVDLE 69 (195)
Q Consensus 4 iI~iq~Gq~GnqIG~~~W~~~~~e~~i~---~~g~~~~~~--~~~~~~~~~~f~e~~~~~~~PRai~vDle 69 (195)
+++--.|++|..+|+.+|+.+..|++-. .-+.+|..+ +...+..++.+....-..+..+.+++|-+
T Consensus 135 i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~ 205 (445)
T PTZ00010 135 ITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNE 205 (445)
T ss_pred EEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccH
Confidence 5666689999999999999999998511 112222111 11123345555544445567777777754
No 50
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=28.65 E-value=37 Score=32.20 Aligned_cols=31 Identities=35% Similarity=0.543 Sum_probs=21.9
Q ss_pred ccceeeEeecCCCcCCcchHHHHHHhHHHcCCcc
Q psy9380 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 163 (195)
Q Consensus 130 lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~ 163 (195)
+.|-.++-. ||+|| +||.++..+....|++.
T Consensus 248 ~~gK~vLVT--GagGS-iGsel~~qil~~~p~~i 278 (588)
T COG1086 248 LTGKTVLVT--GGGGS-IGSELCRQILKFNPKEI 278 (588)
T ss_pred cCCCEEEEe--CCCCc-HHHHHHHHHHhcCCCEE
Confidence 555555544 55564 99999999888888763
No 51
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=28.05 E-value=44 Score=26.45 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=19.3
Q ss_pred cccceeeEeecCCCcCCcchHHHHH
Q psy9380 129 CLQGFQLTHSLGGGTGSGMGTLLIS 153 (195)
Q Consensus 129 ~lqgf~i~~s~~GGtGSG~~s~lle 153 (195)
.+--+.+...+.||-| ||||.|-.
T Consensus 75 ~~~~l~l~~rl~GGKG-GFGs~Lr~ 98 (162)
T PF13019_consen 75 DFITLRLSLRLRGGKG-GFGSQLRA 98 (162)
T ss_pred CceEEEEEEeccCCCc-cHHHHHHH
Confidence 4556788899999998 99988743
No 52
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=28.02 E-value=95 Score=27.23 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=43.8
Q ss_pred hhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCCC
Q psy9380 110 AELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174 (195)
Q Consensus 110 ~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~~ 174 (195)
.+.+..+.++|+... +..+||.|+|..+ | --.++.+++.+-...+|-.++|=+..|...
T Consensus 65 ~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~ 123 (335)
T PRK09461 65 PEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAE 123 (335)
T ss_pred HHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCC
Confidence 344555666666654 5789999999888 4 467888888876667787888888888654
No 53
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=27.85 E-value=86 Score=24.98 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=30.0
Q ss_pred hhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCCCCC
Q psy9380 112 LVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEA 176 (195)
Q Consensus 112 ~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~~~~ 176 (195)
+...+.+.|+..+|+ .+. -++.+.+-|+. -+++.++-.|+.+||... ..+++|.....
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ik--L~~v~Pf~~q~ 84 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIK--LALVLPFENQG 84 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-E--EEEEESSB-TT
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheE--EEEEEcccchh
Confidence 344455667777774 222 22233333333 356667778999999643 36788876643
No 54
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=26.71 E-value=1.7e+02 Score=19.62 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHhhhhhhcc--ccccceeeEeecC----CCcCCcchHHHHHHhHHHcCCccceEEEE
Q psy9380 117 LDVVRKEAESC--DCLQGFQLTHSLG----GGTGSGMGTLLISKIREEYPDRIMNTYSV 169 (195)
Q Consensus 117 ~d~iR~~~E~c--D~lqgf~i~~s~~----GGtGSG~~s~lle~L~dey~k~~i~~~~v 169 (195)
...++..++.| ...+.+.|+|..+ +|. +-..+.+.|+..+....+..+.-
T Consensus 12 ~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~ 67 (83)
T PF01713_consen 12 LRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRD 67 (83)
T ss_dssp HHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeee
Confidence 34444455444 2457788888877 543 77778888877565566666543
No 55
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=26.55 E-value=2.1e+02 Score=23.10 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=10.0
Q ss_pred CccccceEEecC
Q psy9380 57 SKYVPRAILVDL 68 (195)
Q Consensus 57 ~~~~PRai~vDl 68 (195)
..++|+-|++|=
T Consensus 97 ~~~VP~fL~lDQ 108 (193)
T PF12532_consen 97 KRPVPSFLFLDQ 108 (193)
T ss_pred CCCCCCeeeecC
Confidence 578999999994
No 56
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.69 E-value=39 Score=27.84 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.7
Q ss_pred CCCcCCcchHHHHHHhHH
Q psy9380 140 GGGTGSGMGTLLISKIRE 157 (195)
Q Consensus 140 ~GGtGSG~~s~lle~L~d 157 (195)
.-|||||+.+.++.+|-.
T Consensus 78 EIGtGsGY~aAvla~l~~ 95 (209)
T COG2518 78 EIGTGSGYQAAVLARLVG 95 (209)
T ss_pred EECCCchHHHHHHHHHhC
Confidence 357999999999888764
No 57
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=24.00 E-value=2.1e+02 Score=18.65 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=23.0
Q ss_pred cccce-eeEeecCCCcCCcchHH--HHHHhHHHcCCccceEE
Q psy9380 129 CLQGF-QLTHSLGGGTGSGMGTL--LISKIREEYPDRIMNTY 167 (195)
Q Consensus 129 ~lqgf-~i~~s~~GGtGSG~~s~--lle~L~dey~k~~i~~~ 167 (195)
+|.+. ..+.+.++..|-.+..+ |.+.++..|++++++..
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V 53 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVV 53 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEE
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 34444 45578887665545554 47889999998887654
No 58
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=23.98 E-value=2.4e+02 Score=25.40 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=35.7
Q ss_pred chhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCC
Q psy9380 109 GAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 161 (195)
Q Consensus 109 g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k 161 (195)
++.+.+...+||+...+.-+ .|+.|.+||--||+-=.|+-.+.+++..
T Consensus 9 ~~nV~eA~~eRl~~if~~f~-----~VcVSFSGGKDS~lmLhL~~~~ar~~~~ 56 (407)
T COG3969 9 DENVLEAAIERLEWIFNTFP-----RVCVSFSGGKDSGLMLHLVAEVARENGR 56 (407)
T ss_pred cchHHHHHHHHHHHHHhcCC-----eEEEEecCCCchhHHHHHHHHHHHHhCC
Confidence 35567777888888866544 4688999999999887777777666654
No 59
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=23.53 E-value=57 Score=24.75 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.0
Q ss_pred CCccccceEEecCCCCeeeccc
Q psy9380 56 GSKYVPRAILVDLEPGTMDSVR 77 (195)
Q Consensus 56 ~~~~~PRai~vDle~~~i~~i~ 77 (195)
.+.++||.+|+|-+.+++..|.
T Consensus 76 ~g~~vPtivFld~~g~vi~~i~ 97 (130)
T cd02960 76 DGQYVPRIMFVDPSLTVRADIT 97 (130)
T ss_pred cCcccCeEEEECCCCCCccccc
Confidence 4578999999999988876653
No 60
>KOG3178|consensus
Probab=23.43 E-value=56 Score=29.01 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=27.9
Q ss_pred hhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEE
Q psy9380 123 EAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTY 167 (195)
Q Consensus 123 ~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~ 167 (195)
.++.+..+.++....+++||+| .-+=..|+ .||+.....+
T Consensus 168 il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 168 ILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 4666777888999999997765 33335556 9998655544
No 61
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.20 E-value=45 Score=28.59 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=21.5
Q ss_pred HHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHH
Q psy9380 115 SVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154 (195)
Q Consensus 115 ~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~ 154 (195)
++++++|+.+.+-..+- ++|.|+|++++..+.
T Consensus 2 eil~~l~~~i~~~~pIi--------g~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPII--------GAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--EE--------EEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCceE--------EEeeccchhhHHHHh
Confidence 57788888888765553 356677888877654
No 62
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=22.68 E-value=72 Score=23.00 Aligned_cols=21 Identities=29% Similarity=0.754 Sum_probs=18.3
Q ss_pred CCcCCcchHHHHHHhHHHcCC
Q psy9380 141 GGTGSGMGTLLISKIREEYPD 161 (195)
Q Consensus 141 GGtGSG~~s~lle~L~dey~k 161 (195)
.+.|.|++-.|...|+.++|+
T Consensus 45 ~~~g~gv~d~vf~~i~~d~~~ 65 (99)
T cd04265 45 SAQGEGTGEALWRRLRRDFPK 65 (99)
T ss_pred hhhhcChHHHHHHHHHhhCCc
Confidence 456789999999999999986
No 63
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=22.11 E-value=91 Score=21.83 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=20.2
Q ss_pred ccceeeEeecCCCcCCcchHHHHHHhHH
Q psy9380 130 LQGFQLTHSLGGGTGSGMGTLLISKIRE 157 (195)
Q Consensus 130 lqgf~i~~s~~GGtGSG~~s~lle~L~d 157 (195)
-.+|.|..+...|+|+.+.+.+++.|..
T Consensus 19 ~~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 19 KSGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp HTTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 4577899999888877777777776654
No 64
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=22.05 E-value=90 Score=21.50 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=18.4
Q ss_pred ccceEEecCCCC---eeeccccCCCccccCCCc
Q psy9380 60 VPRAILVDLEPG---TMDSVRSGPFGQIFRPDN 89 (195)
Q Consensus 60 ~PRai~vDle~~---~i~~i~~~~~~~lf~p~~ 89 (195)
++|-+|+|-+.+ +++.-+.-..|.+|+|++
T Consensus 6 tqrKvL~DP~SG~Yy~vd~P~Qp~~k~lfDPET 38 (75)
T PF15232_consen 6 TQRKVLQDPESGQYYVVDAPVQPKTKTLFDPET 38 (75)
T ss_pred cCccEeecCCCCCEEEEecCCCcceeeeecCCC
Confidence 467777777665 344333333467888875
No 65
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=21.69 E-value=57 Score=25.39 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=22.5
Q ss_pred cCCCcCCcchHHHHHHhHHHcCCccceEEEE
Q psy9380 139 LGGGTGSGMGTLLISKIREEYPDRIMNTYSV 169 (195)
Q Consensus 139 ~~GGtGSG~~s~lle~L~dey~k~~i~~~~v 169 (195)
+.||+| |+|..+++.|...+....++.-.-
T Consensus 5 itGG~g-glg~~la~~La~~~~~~~il~~r~ 34 (181)
T PF08659_consen 5 ITGGLG-GLGQSLARWLAERGARRLILLGRS 34 (181)
T ss_dssp EETTTS-HHHHHHHHHHHHTT-SEEEEEESS
T ss_pred EECCcc-HHHHHHHHHHHHcCCCEEEEeccC
Confidence 457887 899999999999987666555544
No 66
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.40 E-value=52 Score=27.81 Aligned_cols=21 Identities=29% Similarity=0.784 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q psy9380 15 QIGAKFWEIISDEHGIDPTGA 35 (195)
Q Consensus 15 qIG~~~W~~~~~e~~i~~~g~ 35 (195)
.||++||..+|...+++|-..
T Consensus 207 aiGn~Wyrflc~r~gldp~~~ 227 (268)
T COG2833 207 AIGNKWYRFLCARRGLDPAAT 227 (268)
T ss_pred eechHHHHHHHHhcCCChHHH
Confidence 479999999999998876543
No 67
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=21.28 E-value=1.3e+02 Score=27.21 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=43.3
Q ss_pred hhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcCCccceEEEEecCCC
Q psy9380 111 ELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174 (195)
Q Consensus 111 ~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~k~~i~~~~v~P~~~ 174 (195)
+.+..+.++|++.++ +..+||.|+|..+ | --.++..|..+-+..+|-.+++=+..|...
T Consensus 123 ~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~ 181 (404)
T TIGR02153 123 EYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDR 181 (404)
T ss_pred HHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCC
Confidence 445566677777665 3469999999887 4 467888887766666777788888888655
No 68
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=20.70 E-value=1.5e+02 Score=28.10 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=35.9
Q ss_pred HhhhhhhccccccceeeEeecCCCcCCc-chHH----HHHHhHHHcCCccceEEEEecCCCC
Q psy9380 119 VVRKEAESCDCLQGFQLTHSLGGGTGSG-MGTL----LISKIREEYPDRIMNTYSVVPSPKE 175 (195)
Q Consensus 119 ~iR~~~E~cD~lqgf~i~~s~~GGtGSG-~~s~----lle~L~dey~k~~i~~~~v~P~~~~ 175 (195)
.+|..+|.||. + .++|.+.|++=+| +... ..+.+.++||+..++ ++++|.++.
T Consensus 205 l~~~a~~~~d~--~-lll~p~~G~~k~~d~~~~~r~~~~~~~~~~~p~~~~~-l~~~p~~mr 262 (568)
T PRK05537 205 LTKRAAREVGA--N-LLIHPVVGMTKPGDIDHFTRVRCYEALLDKYPPATTL-LSLLPLAMR 262 (568)
T ss_pred HHHHHHHhcCC--e-EEEecCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcEE-EEeccchhc
Confidence 35666788873 2 3889999887433 3333 266677789987766 788887763
No 69
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.68 E-value=1.2e+02 Score=25.89 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=35.5
Q ss_pred HhhhhhhccccccceeeEeecCCCcCCcch-----HHHHHHhHHHcCCccceE
Q psy9380 119 VVRKEAESCDCLQGFQLTHSLGGGTGSGMG-----TLLISKIREEYPDRIMNT 166 (195)
Q Consensus 119 ~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~-----s~lle~L~dey~k~~i~~ 166 (195)
+++...|.|..+.--.++|+-.+.++-++. +.+++.+-++||+..|+-
T Consensus 145 ~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl 197 (293)
T COG2159 145 RLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVL 197 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEE
Confidence 467778888888888888887766543333 468999999999865543
No 70
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=20.31 E-value=1.3e+02 Score=28.13 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=20.3
Q ss_pred cccceeeEeecCCCcCCcchHHHHHH
Q psy9380 129 CLQGFQLTHSLGGGTGSGMGTLLISK 154 (195)
Q Consensus 129 ~lqgf~i~~s~~GGtGSG~~s~lle~ 154 (195)
.=.++.+.-++++|+| .||+.|+++
T Consensus 114 ~~g~iR~~LDvGcG~a-SF~a~l~~r 138 (506)
T PF03141_consen 114 WGGGIRTALDVGCGVA-SFGAYLLER 138 (506)
T ss_pred cCCceEEEEeccceee-hhHHHHhhC
Confidence 4467889999999998 599888764
No 71
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.30 E-value=74 Score=17.38 Aligned_cols=13 Identities=38% Similarity=1.025 Sum_probs=8.8
Q ss_pred CCCcCCcchHHHH
Q psy9380 140 GGGTGSGMGTLLI 152 (195)
Q Consensus 140 ~GGtGSG~~s~ll 152 (195)
+||.|+||+--++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 4678888876543
Done!