RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9380
(195 letters)
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 335 bits (862), Expect = e-116
Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 2/180 (1%)
Query: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSK 58
MRE + I GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATA 178
+RK A+ C LQGF + HS GGGTGSG +LL+ ++ +Y + +S+ P+P+ +TA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 334 bits (857), Expect = e-115
Identities = 167/178 (93%), Positives = 175/178 (98%)
Query: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREIVHIQAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATA 178
RKE+ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNT+SV+PSPK +
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 330 bits (848), Expect = e-114
Identities = 73/179 (40%), Positives = 112/179 (62%), Gaps = 1/179 (0%)
Query: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAY-HGDSDLQLERINVYYNEASGSKY 59
+REI+ I GQCGNQI FW + EHG+ G G + + V++++ KY
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
VPRA+LVDLEPG + + G Q+F + V GA NNWA+G+ EG +++D +++V
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATA 178
+ E LQGF +THS+GGG+GSG+G+L++ ++R+ YP + + T+SVVPSP + +
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 325 bits (836), Expect = e-111
Identities = 70/176 (39%), Positives = 116/176 (65%), Gaps = 3/176 (1%)
Query: 2 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
REI+ +Q GQCGNQIG +FW+ + EHGI P + +R +V++ +A Y+P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKE 175
+ +EA+ D L+GF L HS+ GGTGSG+G+ L+ ++ + YP +++ TYSV P+ E
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDE 177
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 323 bits (830), Expect = e-111
Identities = 65/181 (35%), Positives = 104/181 (57%), Gaps = 4/181 (2%)
Query: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGS 57
+ + + GQ GNQI A FW+ + EHGIDP + +++ E+S
Sbjct: 3 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 62
Query: 58 KYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 117
YVPRAI+VDLEP +D+V++ G +F P N + GAG N+A G+ G E++ V+
Sbjct: 63 SYVPRAIMVDLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 121
Query: 118 DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEAT 177
+ E + CD + G + H++GGGTGSG G LLI ++E+Y + + + +V+PSP+ ++
Sbjct: 122 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 181
Query: 178 A 178
Sbjct: 182 V 182
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 43.1 bits (101), Expect = 2e-05
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 93 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 152
G G K ++ + ++ SCD ++ GG GSG+ ++
Sbjct: 56 YAEGCGKERKKA-VGYAQTYYKQIIAQIMEKFSSCD---IVIFVATMAGGAGSGITPPIL 111
Query: 153 SKIREEYPDRIMNTYSVVPSPKE 175
++ YP++ V+P E
Sbjct: 112 GLAKQMYPNKHFGFVGVLPKATE 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.004
Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 55/195 (28%)
Query: 13 GNQIGAKF------------WEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG-SKY 59
++ KF I E P+ + + +E+ + YN+ +KY
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSM----MTRMYIEQRDRLYNDNQVFAKY 129
Query: 60 -VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF--GQSGAGNNWAKGHYTEGAELVDSV 116
V R L+P +R RP V G G+G K +
Sbjct: 130 NVSR-----LQP--YLKLRQAL--LELRPAKNVLIDGVLGSG----K-----------TW 165
Query: 117 L--DVVRKEAESCDCLQGFQ---LTHSLGGGTGSGMGTL--LISKIREEYPDRIMNTYSV 169
+ DV + C F+ L + + L L+ +I + R ++ +
Sbjct: 166 VALDVCL--SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN- 222
Query: 170 VPSPKEATADEDAEF 184
+ + E
Sbjct: 223 IKLRIHSIQAELRRL 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.009
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 45/157 (28%)
Query: 32 PTGA-YHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF 90
P + +H S AS I DL + F +
Sbjct: 422 PVASPFH--SH--------LLVPAS------DLINKDLVKNNVS----------FNAKDI 455
Query: 91 ---VFGQSGAGNNWAKGHYTEGAELVDSVL-DVVRKEAESCDCLQGFQLTHSL--GGGTG 144
V+ + G++ + +VD ++ V+ E F+ TH L G G
Sbjct: 456 QIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWET-----TTQFKATHILDFGPGGA 509
Query: 145 SGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADED 181
SG+G L + ++ R+ +V + D+D
Sbjct: 510 SGLGV-LTHRNKDGTGVRV-----IVAGTLDINPDDD 540
Score = 32.7 bits (74), Expect = 0.073
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 23/89 (25%)
Query: 101 W--AKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 158
W A H+ + S+LD+V + LT GG G +IRE
Sbjct: 1646 WNRADNHFKD--TYGFSILDIVINNPVN--------LTIHFGGEKG--------KRIREN 1687
Query: 159 YPDRIMNTYSVVPSPKEATADEDAEFDEE 187
Y M + + K T E +E
Sbjct: 1688 YSA--M-IFETIVDGKLKTEKIFKEINEH 1713
Score = 28.5 bits (63), Expect = 1.5
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 26/72 (36%)
Query: 130 LQGFQLTHSLGGGTGSGMGTLLI--------SKIREEYPDRIMNTYSVVPSPKEATADED 181
+ L+H GS LL+ S+++E++ ++P P E A
Sbjct: 6 TRPLTLSH------GSLEHVLLVPTASFFIASQLQEQF-------NKILPEPTEGFAA-- 50
Query: 182 AEFDEEQEAEVD 193
D+E +
Sbjct: 51 ---DDEPTTPAE 59
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 31.4 bits (70), Expect = 0.16
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 93 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 152
G GAG N LV + + D + +SLGGG+GS +G L+
Sbjct: 52 GTRGAGGNRKVI-----LPLVRPQIPALMDTIPEADFYI---VCYSLGGGSGSVLGPLIT 103
Query: 153 SKIREEYPDRIMNTYSVVPSPKEATAD 179
++ DR + S V E+T +
Sbjct: 104 GQL----ADRKASFVSFVVGAMESTDN 126
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 31.4 bits (70), Expect = 0.19
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 133 FQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADEDAEFDEEQEAEV 192
F + GGG G+G G+L++ IRE++ ++ +PS + E + +
Sbjct: 151 FLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFM 210
Query: 193 DEN 195
E
Sbjct: 211 REQ 213
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 30.4 bits (68), Expect = 0.37
Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 42/175 (24%)
Query: 4 IVHIQAGQCGNQIGAKFWEI-ISDEHGIDPTGAYHGDSDLQ-LERINVYYNEASGSKYVP 61
+ G G I A+ ++ P A +++ Q +I + +
Sbjct: 18 FGFLGLGMGGCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNVRKIQLE 77
Query: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL-VDSVLDVV 120
GA N G E + + V
Sbjct: 78 GYEQ------------------------------GAARNPQVGE--EAFVKHETKIFEAV 105
Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKE 175
++E E D + + +T LGGGTG+G I + E N ++ P++
Sbjct: 106 KQEFEDRDFI--W-ITCGLGGGTGTGALLKAIEMLYEHD----YNFGLLLTLPRD 153
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.63
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 34/81 (41%)
Query: 115 SVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174
+ D + +E ES I K REE R+
Sbjct: 75 AQADRLTQEPES-------------------------IRKWREEQRKRL--------QEL 101
Query: 175 EATADED-AEFDEEQEAEVDE 194
+A + E+ E+ + +++E
Sbjct: 102 DAASKVMEQEWREKAKKDLEE 122
Score = 26.7 bits (58), Expect = 4.6
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 174 KEATADEDAEFDEEQEAEV 192
K D F ++ +A++
Sbjct: 135 KINNRIADKAFYQQPDADI 153
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 28.8 bits (64), Expect = 1.1
Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 110 AELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSV 169
E +++ ++ E+ + + + S GG + + +KI+ ++ +
Sbjct: 56 DEYSKPLIETLKSLPENEEVIL---VGFSFGGINIALAADIFPAKIK-----VLVFLNAF 107
Query: 170 VPSPKEATADEDAEFDEEQEAEVD 193
+P + ++ E D
Sbjct: 108 LPDTTHVPSHVLDKYMEMPGGLGD 131
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 27.3 bits (61), Expect = 3.7
Identities = 11/84 (13%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Query: 112 LVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVP 171
LVD ++V +E C + + + S I R++
Sbjct: 839 LVDVAHEIVVRE-ADCGTTKYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEAL 897
Query: 172 SPKEATADEDAEFDEEQEAEVDEN 195
+ + D + E
Sbjct: 898 GRRLEEGRYLSLEDVHFLIKAAEA 921
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 26.9 bits (59), Expect = 5.0
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 110 AELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSV 169
++ + +++ + + + + H+LGG S KI + +
Sbjct: 64 SDYLSPLMEFMASLPANEKIIL---VGHALGGLAISKAMETFPEKIS-----VAVFLSGL 115
Query: 170 VPSPKEATADEDAEFDEEQEAE 191
+P P + +
Sbjct: 116 MPGPNIDATTVCTKAGSAVLGQ 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 27.1 bits (59), Expect = 5.2
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 55 SGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPD-NFVFGQSGAGNNWAKGHYTEGA 110
+ V+ + + GP I D V G++ K Y G
Sbjct: 128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK-GYRGGT 183
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 26.6 bits (59), Expect = 6.2
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 133 FQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADEDAEFDE 186
FQ H GMG L ++ +++ D TY+ V S ++ A E
Sbjct: 417 FQRLH--------GMGEALYEQLAKDHADIAYRTYAPVGSHRDLLAYLVRRLLE 462
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, MGA family; 2.31A
{Enterococcus faecalis}
Length = 485
Score = 26.4 bits (58), Expect = 7.0
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 142 GTGSGMGTLLISKIREEYPDRI 163
L ++ R+
Sbjct: 406 QGEPAWKAFLQQELAAYLGTRV 427
>2x78_A Integrase; viral protein, DNA-directed DNA polyme
nucleotidyltransferase, DNA integration, aspartyl
protease, recombination, transferase; 2.00A {Human
spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Length = 200
Score = 25.7 bits (57), Expect = 8.0
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 19 KFWEIISDEHGI--DPTGAYHGDSDLQLERIN 48
+ + E GI + + YH S ++ER N
Sbjct: 84 STFAEWAKERGIHLEFSTPYHPQSGSKVERKN 115
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric
acid cycle, heat- like domain, lyase; HET: TRA; 2.40A
{Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Length = 865
Score = 26.3 bits (58), Expect = 8.2
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 149 TLLISKIREEYPD------RIMNTYSVVPSPKEATADEDAEFDEEQEAEVDE 194
LL I E Y D RI + +P+ AD DAE+ + ++ +
Sbjct: 625 VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLAD 676
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed
beta-propeller, structural genomics, joint center F
structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides
fragilis} PDB: 3fgb_A
Length = 361
Score = 26.3 bits (58), Expect = 8.5
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 30 IDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVR-SGPFGQIFRPD 88
I P G Y DL ++I+ + + + L P SGP IF D
Sbjct: 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD 221
Query: 89 N 89
Sbjct: 222 G 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.400
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,179,781
Number of extensions: 190471
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 29
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)