RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9380
(195 letters)
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 276 bits (706), Expect = 1e-95
Identities = 168/178 (94%), Positives = 175/178 (98%)
Query: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREIVHIQAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATA 178
RKE+ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNT+SVVPSPK +
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 252 bits (646), Expect = 2e-86
Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 2/180 (1%)
Query: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + I GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATA 178
+RK A+ C LQGF + HS GGGTGSG +LL+ ++ +Y + +S+ P+P+ +TA
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 230 bits (588), Expect = 8e-78
Identities = 65/181 (35%), Positives = 104/181 (57%), Gaps = 4/181 (2%)
Query: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGS 57
+ + + GQ GNQI A FW+ + EHGIDP + +++ E+S
Sbjct: 1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60
Query: 58 KYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 117
YVPRAI+VDLEP +D+V++ G +F P N + GAG N+A G+ G E++ V+
Sbjct: 61 SYVPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 119
Query: 118 DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEAT 177
+ E + CD + G + H++GGGTGSG G LLI ++E+Y + + + +V+PSP+ ++
Sbjct: 120 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 179
Query: 178 A 178
Sbjct: 180 V 180
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 28.3 bits (63), Expect = 0.45
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 123 EAESCDCLQGFQLTH---SLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSP 173
+ L+G + +GGGTG+G ++ +E + T +VV P
Sbjct: 76 RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMG----ILTVAVVTRP 125
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 26.1 bits (57), Expect = 2.2
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 123 EAESCDCLQGFQLTH---SLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATAD 179
E + + LQ + GGGTG+G ++ +E + T ++V +P
Sbjct: 75 EEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMG----ILTVAIVTTPFYFEGP 130
Query: 180 EDAEFDEE 187
E + E
Sbjct: 131 ERLKKAIE 138
>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger
[TaxId: 5061]}
Length = 261
Score = 26.3 bits (57), Expect = 2.5
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTG 144
+ F G+Y + D V +V+++A HSLG
Sbjct: 80 YTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHSLGA--- 136
Query: 145 SGMGTLLISKIREEYPDRIMNTYSVVPSPKEATAD 179
M L +++ Y + + T+ S +A A
Sbjct: 137 -SMAALTAAQLSATYDNVRLYTFGEPRSGNQAFAS 170
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B
light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 24.4 bits (53), Expect = 7.2
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 153 SKIREEYPDRI 163
IRE++P +I
Sbjct: 20 RLIREQHPTKI 30
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD,
Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Length = 116
Score = 24.3 bits (53), Expect = 7.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 153 SKIREEYPDRI 163
+KIR +YPDR+
Sbjct: 19 AKIRAKYPDRV 29
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 24.3 bits (53), Expect = 7.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 153 SKIREEYPDRI 163
KIR++YPDR+
Sbjct: 21 EKIRKKYPDRV 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.400
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,447
Number of extensions: 34298
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 13
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)