BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9383
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M1M|A Chain A, Crystal Structure Of The Primase-Polymerase From
Sulfolobus Islandicus
Length = 335
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 59 GADQPDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFS 99
G PD ILE+L R S++ +EN+ N+++ + LS+ +S
Sbjct: 289 GVTDPDKILELLPRDSKA--KENEKWNTQKYFVITLSKAWS 327
>pdb|1SAZ|A Chain A, Membership In The Askha Superfamily: Enzymological
Properties And Crystal Structure Of Butyrate Kinase 2
From Thermotoga Maritima
Length = 381
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 13 SFSISPLGMRHFSELLDQLQFFEFIGRRDKFQDQSSFVIKQY 54
+FS SP + F ++LDQL+F E I R +F +++ + + +
Sbjct: 29 NFSHSPDELGRFQKILDQLEFREKIAR--QFVEETGYSLSSF 68
>pdb|1X9J|A Chain A, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|B Chain B, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|C Chain C, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|D Chain D, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|E Chain E, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|F Chain F, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|G Chain G, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|H Chain H, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
Length = 375
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 13 SFSISPLGMRHFSELLDQLQFFEFIGRRDKFQDQSSFVIKQY 54
+FS SP + F ++LDQL+F E I R +F +++ + + +
Sbjct: 29 NFSHSPDELGRFQKILDQLEFREKIAR--QFVEETGYSLSSF 68
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 2 LTFKTES---EFFVSFSISPLGMRHFSELLDQLQFFEFIGRRDKFQDQS-SFVIKQYDNV 57
LT++T +F+V +P EL+ Q Q+ E IGR S F + +Y
Sbjct: 252 LTYRTTGGVLDFYVFLGPTP-------ELVTQ-QYTELIGRPVMVPYWSLGFQLCRYGYQ 303
Query: 58 EGADQPDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQA 103
++ L EM+A ++ +D++ +R LD LS F+G A
Sbjct: 304 NDSEIASLYDEMVAAQIPYDVQYSDIDYMERQLDFTLSPKFAGFPA 349
>pdb|3RFQ|A Chain A, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase Moab2 From Mycobacterium Marinum
pdb|3RFQ|B Chain B, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase Moab2 From Mycobacterium Marinum
pdb|3RFQ|C Chain C, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase Moab2 From Mycobacterium Marinum
Length = 185
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 90 LDLGLSRGFSGSQAAKHLMGLAAANYA 116
+D GLSRG +G + ++ LA + YA
Sbjct: 136 IDAGLSRGLAGVSGSTLVVNLAGSRYA 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,449,149
Number of Sequences: 62578
Number of extensions: 121802
Number of successful extensions: 225
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 11
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)