Query psy9383
Match_columns 133
No_of_seqs 19 out of 21
Neff 1.7
Searched_HMMs 46136
Date Fri Aug 16 17:42:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09079 Cdc6_C: CDC6, C termi 79.4 1.3 2.7E-05 29.0 1.5 54 14-70 32-85 (85)
2 PF00214 Calc_CGRP_IAPP: Calci 71.8 1.5 3.2E-05 32.6 0.4 12 114-125 118-129 (130)
3 PRK15451 tRNA cmo(5)U34 methyl 66.4 5.7 0.00012 30.3 2.6 52 49-105 23-76 (247)
4 TIGR00138 gidB 16S rRNA methyl 55.3 11 0.00023 28.1 2.3 20 86-105 43-62 (181)
5 PF12847 Methyltransf_18: Meth 54.6 6.6 0.00014 25.0 1.0 21 86-106 2-22 (112)
6 PF13489 Methyltransf_23: Meth 53.7 12 0.00026 24.8 2.1 35 65-105 8-42 (161)
7 PRK08287 cobalt-precorrin-6Y C 51.1 7.2 0.00016 28.1 0.8 25 82-106 28-52 (187)
8 PRK00377 cbiT cobalt-precorrin 50.4 7.4 0.00016 28.6 0.8 26 82-107 37-62 (198)
9 TIGR02752 MenG_heptapren 2-hep 49.8 5.1 0.00011 29.3 -0.1 24 83-106 43-66 (231)
10 PRK14968 putative methyltransf 49.3 12 0.00026 25.9 1.6 22 85-106 23-44 (188)
11 PLN02233 ubiquinone biosynthes 48.9 5.6 0.00012 31.0 -0.1 25 82-106 70-94 (261)
12 PRK08317 hypothetical protein; 48.6 9.1 0.0002 26.9 1.0 26 82-107 16-41 (241)
13 TIGR02469 CbiT precorrin-6Y C5 48.0 7.8 0.00017 24.7 0.5 22 85-106 19-40 (124)
14 PLN02476 O-methyltransferase 47.9 16 0.00036 30.1 2.5 23 85-107 118-140 (278)
15 TIGR02072 BioC biotin biosynth 47.4 7.6 0.00016 27.5 0.4 23 85-107 34-56 (240)
16 COG3897 Predicted methyltransf 46.8 11 0.00024 31.4 1.4 34 73-106 67-100 (218)
17 TIGR01934 MenG_MenH_UbiE ubiqu 46.4 11 0.00025 26.5 1.2 23 85-107 39-61 (223)
18 PF02353 CMAS: Mycolic acid cy 46.0 17 0.00036 29.3 2.2 46 64-110 41-86 (273)
19 PRK01683 trans-aconitate 2-met 43.7 9.7 0.00021 28.5 0.5 24 83-106 29-52 (258)
20 TIGR00740 methyltransferase, p 43.0 33 0.00072 25.6 3.3 23 84-106 52-74 (239)
21 PLN02781 Probable caffeoyl-CoA 38.6 21 0.00045 27.6 1.7 23 85-107 68-90 (234)
22 PRK14967 putative methyltransf 37.8 22 0.00047 26.6 1.6 37 62-106 21-57 (223)
23 PRK14103 trans-aconitate 2-met 37.3 15 0.00032 27.8 0.7 46 52-106 5-50 (255)
24 cd08768 Cdc6_C Winged-helix do 35.1 25 0.00053 22.4 1.3 30 14-43 39-68 (87)
25 PF13847 Methyltransf_31: Meth 34.3 17 0.00036 25.1 0.5 21 85-105 3-23 (152)
26 PLN02366 spermidine synthase 33.9 33 0.00072 28.3 2.2 53 48-106 60-112 (308)
27 PHA02594 nadV nicotinamide pho 33.4 30 0.00065 31.1 2.0 19 87-106 177-195 (470)
28 PLN02244 tocopherol O-methyltr 32.5 32 0.0007 27.9 1.9 24 84-107 117-140 (340)
29 PRK06922 hypothetical protein; 32.1 66 0.0014 30.4 4.1 81 8-105 343-438 (677)
30 smart00828 PKS_MT Methyltransf 31.8 24 0.00052 25.6 1.0 21 87-107 1-21 (224)
31 PF13679 Methyltransf_32: Meth 31.4 38 0.00082 23.8 1.9 23 83-105 23-45 (141)
32 TIGR00438 rrmJ cell division p 31.2 55 0.0012 23.6 2.8 26 82-107 29-54 (188)
33 PRK11873 arsM arsenite S-adeno 30.1 25 0.00055 26.7 0.9 25 82-106 74-98 (272)
34 PRK07402 precorrin-6B methylas 29.4 26 0.00055 25.5 0.8 23 84-106 39-61 (196)
35 COG4976 Predicted methyltransf 28.7 43 0.00093 29.1 2.1 40 63-110 111-153 (287)
36 PRK11188 rrmJ 23S rRNA methylt 28.3 42 0.00092 25.4 1.9 22 85-106 51-72 (209)
37 COG1990 pth2 Peptidyl-tRNA hyd 28.3 34 0.00074 26.3 1.3 23 91-113 15-37 (122)
38 PF03960 ArsC: ArsC family; I 27.7 1.2E+02 0.0026 20.6 3.8 57 11-74 25-84 (110)
39 PRK00811 spermidine synthase; 27.4 36 0.00077 27.1 1.3 41 61-106 57-97 (283)
40 PF01596 Methyltransf_3: O-met 26.2 42 0.00091 26.0 1.5 23 85-107 45-67 (205)
41 TIGR03534 RF_mod_PrmC protein- 26.1 25 0.00053 25.7 0.2 22 85-106 87-108 (251)
42 TIGR00477 tehB tellurite resis 25.7 29 0.00064 25.6 0.6 21 86-106 31-51 (195)
43 PLN02589 caffeoyl-CoA O-methyl 23.8 43 0.00094 26.9 1.2 22 85-106 79-100 (247)
44 PF06564 YhjQ: YhjQ protein; 23.8 62 0.0013 26.4 2.1 62 45-111 164-232 (243)
45 PRK04457 spermidine synthase; 23.7 30 0.00066 27.3 0.3 24 84-107 65-88 (262)
46 PF06515 BDV_P10: Borna diseas 23.5 75 0.0016 23.5 2.3 12 64-75 7-18 (87)
47 TIGR00080 pimt protein-L-isoas 23.3 35 0.00075 25.3 0.6 24 83-106 75-98 (215)
48 PRK01581 speE spermidine synth 23.1 51 0.0011 28.9 1.6 45 58-107 128-172 (374)
49 PRK11207 tellurite resistance 22.4 24 0.00053 26.1 -0.4 21 86-106 31-51 (197)
50 PRK13944 protein-L-isoaspartat 21.8 37 0.00081 25.2 0.5 22 85-106 72-93 (205)
51 PRK00312 pcm protein-L-isoaspa 21.8 38 0.00082 24.8 0.5 22 84-105 77-98 (212)
52 COG4122 Predicted O-methyltran 21.5 68 0.0015 25.8 1.9 22 85-106 59-80 (219)
53 PRK09328 N5-glutamine S-adenos 21.5 65 0.0014 24.1 1.7 23 85-107 108-130 (275)
54 PF05193 Peptidase_M16_C: Pept 21.4 56 0.0012 21.2 1.2 27 64-90 158-184 (184)
55 PF05175 MTS: Methyltransferas 21.3 40 0.00087 24.3 0.5 24 85-108 31-54 (170)
56 smart00650 rADc Ribosomal RNA 21.2 32 0.0007 24.5 0.0 24 83-106 11-34 (169)
57 PRK00107 gidB 16S rRNA methylt 21.0 64 0.0014 24.5 1.6 24 83-106 43-66 (187)
58 TIGR03587 Pse_Me-ase pseudamin 21.0 82 0.0018 23.9 2.2 24 83-106 41-64 (204)
59 PRK13942 protein-L-isoaspartat 20.8 39 0.00084 25.4 0.4 24 83-106 74-97 (212)
60 TIGR01983 UbiG ubiquinone bios 20.7 81 0.0017 22.7 2.0 22 85-106 45-66 (224)
61 PRK11705 cyclopropane fatty ac 20.6 49 0.0011 27.8 1.0 25 82-106 164-188 (383)
62 COG3394 Uncharacterized protei 20.5 58 0.0013 27.8 1.4 19 91-109 11-29 (257)
63 PLN02396 hexaprenyldihydroxybe 20.4 1.3E+02 0.0028 25.0 3.4 21 85-105 131-151 (322)
No 1
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=79.37 E-value=1.3 Score=29.02 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=33.4
Q ss_pred eeeCcchhhhHHHHhhhhhhhhhccccccccccchhhhhhcccccCCCChHHHHHHH
Q psy9383 14 FSISPLGMRHFSELLDQLQFFEFIGRRDKFQDQSSFVIKQYDNVEGADQPDLILEML 70 (133)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~ig~r~~~~~~~~~~~~~Yd~~~~~~d~DylleLL 70 (133)
..+.|++.|.|++++.+|.+.-+|-.+.+-.....=. |.......||+.+++.|
T Consensus 32 ~~~~pls~~r~~~~l~eL~~~gli~~~~~~~G~~~G~---~~~~~l~~d~~~v~~aL 85 (85)
T PF09079_consen 32 LGVDPLSYRRFSDYLSELEMLGLIESERKGRGRGRGR---TREISLNVDPEDVLEAL 85 (85)
T ss_dssp TTS----HHHHHHHHHHHHHTTSEEEEEEE-TT-CTE---EEEEEECSSSHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCCe---EEEEEecCCHHHHHhhC
Confidence 3568999999999999999999986665432221112 34446677788887754
No 2
>PF00214 Calc_CGRP_IAPP: Calcitonin / CGRP / IAPP family The prints entry is specific to the calcitonins; InterPro: IPR021116 Calcitonin [] is a 32 amino acid polypeptide hormone that causes a rapid but short-lived drop in the level of calcium and phosphate in the blood, by promoting the incorporation of these ions in the bones. This is the alpha type. Alternative splicing of the gene coding for calcitonin produces a distantly related peptide of 37 amino acids, called calcitonin gene-related peptide (CGRP), beta type. CGRP induces vasodilatation in a variety of vessels, including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role. Islet amyloid polypeptide (IAPP) [] (also known as diabetes-associated peptide (DAP), or amylin) is a peptide of 37 amino acids that selectively inhibits insulin-stimulated glucose utilisation and glycogen deposition in muscle, while not affecting adipocyte glucose metabolism. Structurally, IAPP is closely related to CGRP. Calcitonin receptor-stimulating peptide 1 stimulates cAMP production via the calcitonin receptor. Two conserved cysteines in the N-terminal of these peptides are known to be involved in a disulphide bond. The C-terminal residue of all three peptides is amidated. xCxxxxxCxxxxxxxxxxxxxxxxxxxxxxxxxxxx-NH(2) | | Amide group +-----+ 'C': conserved cysteine involved in a disulphide bond. This entry represents procalcitonin (before cleavage into the calcitonin peptide) and adrenomedullin.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 2L7S_A 2FLY_A 2JXZ_A 2GLG_A 2GLH_A 3G7W_A 2G48_D 3HGZ_D 3G7V_B 2L86_A ....
Probab=71.76 E-value=1.5 Score=32.58 Aligned_cols=12 Identities=58% Similarity=0.670 Sum_probs=3.9
Q ss_pred cCCCCCCCccCC
Q psy9383 114 NYAGGPGRRRRS 125 (133)
Q Consensus 114 N~agGPGRrRRs 125 (133)
.-+.||||||||
T Consensus 118 ~g~~~yGrrRRs 129 (130)
T PF00214_consen 118 VGPKGYGRRRRS 129 (130)
T ss_dssp CCTTT-------
T ss_pred CCCCCCCcCCCC
Confidence 568899999997
No 3
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=66.38 E-value=5.7 Score=30.30 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=34.5
Q ss_pred hhhhhcccccC--CCChHHHHHHHHHhhhhcccchhhhhcccccccccCCCCchhHHHH
Q psy9383 49 FVIKQYDNVEG--ADQPDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQAAK 105 (133)
Q Consensus 49 ~~~~~Yd~~~~--~~d~DylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAK 105 (133)
.|-+.||++-. .+.-+.+.+++..+-... +....++||+|-|.|......++
T Consensus 23 ~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~-----~~~~~~vLDlGcGtG~~~~~l~~ 76 (247)
T PRK15451 23 RVAEVFPDMIQRSVPGYSNIISMIGMLAERF-----VQPGTQVYDLGCSLGAATLSVRR 76 (247)
T ss_pred HHHHhhhhHHHhcCCChHHHHHHHHHHHHHh-----CCCCCEEEEEcccCCHHHHHHHH
Confidence 45556776554 556677888877754332 23457899999999987655554
No 4
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=55.30 E-value=11 Score=28.13 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.6
Q ss_pred cccccccccCCCCchhHHHH
Q psy9383 86 SKRGLDLGLSRGFSGSQAAK 105 (133)
Q Consensus 86 ~KR~lDfGL~RG~SGsqaAK 105 (133)
.+++||+|-|.|+.+...|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~ 62 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI 62 (181)
T ss_pred CCeEEEecCCCCccHHHHHH
Confidence 67999999999999888764
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=54.65 E-value=6.6 Score=24.98 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=18.5
Q ss_pred cccccccccCCCCchhHHHHH
Q psy9383 86 SKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 86 ~KR~lDfGL~RG~SGsqaAKh 106 (133)
.+|+||+|-|-|.....+|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~ 22 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARL 22 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHH
T ss_pred CCEEEEEcCcCCHHHHHHHhc
Confidence 368999999999999999984
No 6
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=53.74 E-value=12 Score=24.84 Aligned_cols=35 Identities=34% Similarity=0.376 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhcccchhhhhcccccccccCCCCchhHHHH
Q psy9383 65 LILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQAAK 105 (133)
Q Consensus 65 ylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAK 105 (133)
.+.++|.++... +...+++||+|-|.|......++
T Consensus 8 ~~~~~~~~~~~~------~~~~~~vLDiGcG~G~~~~~l~~ 42 (161)
T PF13489_consen 8 AYADLLERLLPR------LKPGKRVLDIGCGTGSFLRALAK 42 (161)
T ss_dssp CHHHHHHHHHTC------TTTTSEEEEESSTTSHHHHHHHH
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEcCCCCHHHHHHHH
Confidence 345666665521 56778999999999976555544
No 7
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=51.07 E-value=7.2 Score=28.06 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=20.5
Q ss_pred hhhhcccccccccCCCCchhHHHHH
Q psy9383 82 DLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 82 dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
++++.+++||+|-|-|..+..+|+.
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~ 52 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQ 52 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHH
Confidence 3456778999999999998888764
No 8
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=50.38 E-value=7.4 Score=28.56 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.1
Q ss_pred hhhhcccccccccCCCCchhHHHHHH
Q psy9383 82 DLENSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 82 dLe~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
++...+++||+|.|-|+-+.++|+.+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~ 62 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLV 62 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHh
Confidence 45566789999999999888888753
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=49.85 E-value=5.1 Score=29.26 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=19.1
Q ss_pred hhhcccccccccCCCCchhHHHHH
Q psy9383 83 LENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 83 Le~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+...+++||+|-|.|......|++
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~ 66 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEA 66 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHH
Confidence 445689999999999987766664
No 10
>PRK14968 putative methyltransferase; Provisional
Probab=49.29 E-value=12 Score=25.87 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.0
Q ss_pred hcccccccccCCCCchhHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+.+++||+|.|.|+.....|+.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~ 44 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN 44 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh
Confidence 4578999999999987776654
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=48.89 E-value=5.6 Score=30.98 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=18.4
Q ss_pred hhhhcccccccccCCCCchhHHHHH
Q psy9383 82 DLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 82 dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
.+....++||+|-|.|......|++
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~ 94 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEK 94 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHH
Confidence 3445679999999999866555543
No 12
>PRK08317 hypothetical protein; Provisional
Probab=48.56 E-value=9.1 Score=26.89 Aligned_cols=26 Identities=23% Similarity=0.412 Sum_probs=20.5
Q ss_pred hhhhcccccccccCCCCchhHHHHHH
Q psy9383 82 DLENSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 82 dLe~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
.+...+++||+|-|.|.-....|++.
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~ 41 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRV 41 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc
Confidence 44556789999999998877777754
No 13
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=47.96 E-value=7.8 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=18.5
Q ss_pred hcccccccccCCCCchhHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh 106 (133)
..+++||+|-|.|.-...+|++
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~ 40 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARL 40 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999988888775
No 14
>PLN02476 O-methyltransferase
Probab=47.91 E-value=16 Score=30.12 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.3
Q ss_pred hcccccccccCCCCchhHHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
+.|++|++|-+-|||+...|+.+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al 140 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVL 140 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhC
Confidence 48999999999999999888753
No 15
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=47.40 E-value=7.6 Score=27.48 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.1
Q ss_pred hcccccccccCCCCchhHHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
..+++||+|-|.|......+++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~ 56 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF 56 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC
Confidence 34789999999998777766653
No 16
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=46.79 E-value=11 Score=31.43 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=27.5
Q ss_pred hhhhcccchhhhhcccccccccCCCCchhHHHHH
Q psy9383 73 LSQSILRENDLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 73 lg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+.+-|+...+...-||+||||-|-|.-+-.|||.
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~a 100 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARA 100 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHh
Confidence 3444667788889999999999999888777775
No 17
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=46.36 E-value=11 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=18.5
Q ss_pred hcccccccccCCCCchhHHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
..+++||+|-|.|......++..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc
Confidence 56799999999998877766654
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=45.96 E-value=17 Score=29.30 Aligned_cols=46 Identities=26% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhcccchhhhhcccccccccCCCCchhHHHHHHhhh
Q psy9383 64 DLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQAAKHLMGL 110 (133)
Q Consensus 64 DylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAKh~mGL 110 (133)
+-|-+.=.+.-..++..-.|..-.|+||+|-|.|--.-.+|++. |.
T Consensus 41 ~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~ 86 (273)
T PF02353_consen 41 DTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GC 86 (273)
T ss_dssp --HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-Cc
Confidence 33444444444455667788888999999999999888888875 53
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=43.70 E-value=9.7 Score=28.48 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=19.3
Q ss_pred hhhcccccccccCCCCchhHHHHH
Q psy9383 83 LENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 83 Le~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+...+++||+|-|.|......|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~ 52 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVER 52 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHH
Confidence 345679999999999988777765
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=42.97 E-value=33 Score=25.61 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=18.5
Q ss_pred hhcccccccccCCCCchhHHHHH
Q psy9383 84 ENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 84 e~~KR~lDfGL~RG~SGsqaAKh 106 (133)
....++||+|-|.|......+++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~ 74 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRN 74 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHh
Confidence 35568999999999987777765
No 21
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=38.60 E-value=21 Score=27.62 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=19.1
Q ss_pred hcccccccccCCCCchhHHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
+.|++||+|-+-|||+.-.|+++
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~ 90 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALAL 90 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhC
Confidence 47899999999999987666553
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=37.84 E-value=22 Score=26.57 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHhhhhcccchhhhhcccccccccCCCCchhHHHHH
Q psy9383 62 QPDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 62 d~DylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
|...+.+.+.+++ +....++||+|-|.|.-+..+|+.
T Consensus 21 ds~~l~~~l~~~~--------~~~~~~vLDlGcG~G~~~~~la~~ 57 (223)
T PRK14967 21 DTQLLADALAAEG--------LGPGRRVLDLCTGSGALAVAAAAA 57 (223)
T ss_pred cHHHHHHHHHhcc--------cCCCCeEEEecCCHHHHHHHHHHc
Confidence 5566667766543 223468999999999887777763
No 23
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=37.31 E-value=15 Score=27.84 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=28.6
Q ss_pred hhcccccCCCChHHHHHHHHHhhhhcccchhhhhcccccccccCCCCchhHHHHH
Q psy9383 52 KQYDNVEGADQPDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 52 ~~Yd~~~~~~d~DylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+.|....... ...+.++|.++. +...+++||+|-|.|......++.
T Consensus 5 ~~y~~~~~~~-~~~~~~ll~~l~--------~~~~~~vLDlGcG~G~~~~~l~~~ 50 (255)
T PRK14103 5 DVYLAFADHR-GRPFYDLLARVG--------AERARRVVDLGCGPGNLTRYLARR 50 (255)
T ss_pred HHHHHHHhHh-hCHHHHHHHhCC--------CCCCCEEEEEcCCCCHHHHHHHHH
Confidence 3454433333 244556666655 234589999999999877666553
No 24
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=35.12 E-value=25 Score=22.40 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.5
Q ss_pred eeeCcchhhhHHHHhhhhhhhhhccccccc
Q psy9383 14 FSISPLGMRHFSELLDQLQFFEFIGRRDKF 43 (133)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~ig~r~~~ 43 (133)
+.+.|+++|.|++++..|...-+|--+.+-
T Consensus 39 ~~~~~l~~~~~~~~l~~L~~~gli~~~~~~ 68 (87)
T cd08768 39 IGVDPLTQRRISDLLSELEMLGLLETEVSS 68 (87)
T ss_pred cCCCCCcHHHHHHHHHHHHHcCCeEEEEec
Confidence 357899999999999999998888654443
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=34.27 E-value=17 Score=25.13 Aligned_cols=21 Identities=43% Similarity=0.373 Sum_probs=17.4
Q ss_pred hcccccccccCCCCchhHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAK 105 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAK 105 (133)
+.+++||+|-|.|+..-..|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~ 23 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK 23 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHH
Confidence 457899999999999988885
No 26
>PLN02366 spermidine synthase
Probab=33.86 E-value=33 Score=28.26 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=34.5
Q ss_pred hhhhhhcccccCCCChHHHHHHHHHhhhhcccchhhhhcccccccccCCCCchhHHHHH
Q psy9383 48 SFVIKQYDNVEGADQPDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 48 ~~~~~~Yd~~~~~~d~DylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
.+++.+.-+ ..+.|+-.-.|+|..+.- . -.++-||+|++|.|-|......+||
T Consensus 60 ~L~lDg~~q-~~~~de~~Y~e~l~h~~l---~--~~~~pkrVLiIGgG~G~~~rellk~ 112 (308)
T PLN02366 60 VLVLDGVIQ-LTERDECAYQEMITHLPL---C--SIPNPKKVLVVGGGDGGVLREIARH 112 (308)
T ss_pred EEEECCEee-ecCccHHHHHHHHHHHHH---h--hCCCCCeEEEEcCCccHHHHHHHhC
Confidence 344444433 334454445677776542 1 2345799999999999988888887
No 27
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=33.43 E-value=30 Score=31.09 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=14.5
Q ss_pred ccccccccCCCCchhHHHHH
Q psy9383 87 KRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 87 KR~lDfGL~RG~SGsqaAKh 106 (133)
.+..|||+ ||.||.++|..
T Consensus 177 ~~l~DFG~-Rra~g~eaa~~ 195 (470)
T PHA02594 177 FQLHDFGA-RGMSSGESAAL 195 (470)
T ss_pred ceeeeccC-CCCCChHHHHH
Confidence 36899997 88888877653
No 28
>PLN02244 tocopherol O-methyltransferase
Probab=32.49 E-value=32 Score=27.90 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=19.5
Q ss_pred hhcccccccccCCCCchhHHHHHH
Q psy9383 84 ENSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 84 e~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
...+++||+|-|-|......|+..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~ 140 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY 140 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc
Confidence 456789999999999887777753
No 29
>PRK06922 hypothetical protein; Provisional
Probab=32.06 E-value=66 Score=30.43 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=43.9
Q ss_pred ceeEEEeeeCcchhhhHHH---------Hhhh--hhhhhhccccc----cccccchhhhhhcccccCCCChHHHHHHHHH
Q psy9383 8 SEFFVSFSISPLGMRHFSE---------LLDQ--LQFFEFIGRRD----KFQDQSSFVIKQYDNVEGADQPDLILEMLAR 72 (133)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~ig~r~----~~~~~~~~~~~~Yd~~~~~~d~DylleLL~R 72 (133)
+.-+|+|..|+.|-.-..- +-++ +-++.|+|.|. .|.++.+ |-+.. ....++..+++
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~fd~fg~r~D~~dRf~~~~~-----yle~m-~~~~~~k~~i~-- 414 (677)
T PRK06922 343 KTAYVSFRFSAVGEALITFCVEAEKIDMMHARANVLLFDFFGLRKDAYDRFHNEEV-----YLEHM-NSSADDKRIIL-- 414 (677)
T ss_pred ceeeEEEeecHHHHHHHHHHHhhhhcchHHHHHHhHHHHHhccChhhHhHHHhHHH-----HHHhc-cccHHHHHHHh--
Confidence 4468999999998543221 2222 23667777763 2323322 22211 11333332221
Q ss_pred hhhhcccchhhhhcccccccccCCCCchhHHHH
Q psy9383 73 LSQSILRENDLENSKRGLDLGLSRGFSGSQAAK 105 (133)
Q Consensus 73 lg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAK 105 (133)
++....++||+|-|-|......|+
T Consensus 415 ---------d~~~g~rVLDIGCGTG~ls~~LA~ 438 (677)
T PRK06922 415 ---------DYIKGDTIVDVGAGGGVMLDMIEE 438 (677)
T ss_pred ---------hhcCCCEEEEeCCCCCHHHHHHHH
Confidence 222357899999999987655554
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=31.78 E-value=24 Score=25.62 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=17.2
Q ss_pred ccccccccCCCCchhHHHHHH
Q psy9383 87 KRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 87 KR~lDfGL~RG~SGsqaAKh~ 107 (133)
|++||+|-|.|......|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~ 21 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH 21 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC
Confidence 689999999998777777654
No 31
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=31.41 E-value=38 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=18.7
Q ss_pred hhhcccccccccCCCCchhHHHH
Q psy9383 83 LENSKRGLDLGLSRGFSGSQAAK 105 (133)
Q Consensus 83 Le~~KR~lDfGL~RG~SGsqaAK 105 (133)
.....+++|||-|+||=+...|.
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 34567799999999998877776
No 32
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=31.24 E-value=55 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=18.9
Q ss_pred hhhhcccccccccCCCCchhHHHHHH
Q psy9383 82 DLENSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 82 dLe~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
.+...+++||+|-|-|.-...+++..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~ 54 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQV 54 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHh
Confidence 44556799999999997666555543
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=30.11 E-value=25 Score=26.66 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=20.4
Q ss_pred hhhhcccccccccCCCCchhHHHHH
Q psy9383 82 DLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 82 dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
.+...+++||+|-|-|....+++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~ 98 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARR 98 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHH
Confidence 4556789999999999888777765
No 34
>PRK07402 precorrin-6B methylase; Provisional
Probab=29.40 E-value=26 Score=25.50 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=18.2
Q ss_pred hhcccccccccCCCCchhHHHHH
Q psy9383 84 ENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 84 e~~KR~lDfGL~RG~SGsqaAKh 106 (133)
....++||+|-|-|+.+..+|+.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~ 61 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLL 61 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999988777653
No 35
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.65 E-value=43 Score=29.12 Aligned_cols=40 Identities=38% Similarity=0.682 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhhhhcccchhhhhcccccccccCCCCchhH---HHHHHhhh
Q psy9383 63 PDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQ---AAKHLMGL 110 (133)
Q Consensus 63 ~DylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsq---aAKh~mGL 110 (133)
|..|-++|.+.+ ..--+|+||+|.|-|.+|-. -|+++-|.
T Consensus 111 P~~l~emI~~~~--------~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv 153 (287)
T COG4976 111 PELLAEMIGKAD--------LGPFRRMLDLGCGTGLTGEALRDMADRLTGV 153 (287)
T ss_pred HHHHHHHHHhcc--------CCccceeeecccCcCcccHhHHHHHhhccCC
Confidence 455555555433 22278999999999999853 35555553
No 36
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=28.33 E-value=42 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.6
Q ss_pred hcccccccccCCCCchhHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh 106 (133)
..+++||+|-|-|.-...+++.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~ 72 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQ 72 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHH
Confidence 4568999999999877766664
No 37
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=28.28 E-value=34 Score=26.27 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=19.4
Q ss_pred ccccCCCCchhHHHHHHhhhhhh
Q psy9383 91 DLGLSRGFSGSQAAKHLMGLAAA 113 (133)
Q Consensus 91 DfGL~RG~SGsqaAKh~mGLaaA 113 (133)
|++||||.=.+|+|-+-...+..
T Consensus 15 Dl~m~kGKiaaQvaHaa~~~~~~ 37 (122)
T COG1990 15 DLKMSKGKLAAQVAHAAVDAAKL 37 (122)
T ss_pred ccccccchHHHHHHHHHHHHHHH
Confidence 89999999999999887766543
No 38
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=27.73 E-value=1.2e+02 Score=20.56 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=36.3
Q ss_pred EEEeeeCcchhhhHHHHhhhhh--hhhhccccccccccchhhhhhcc-cccCCCChHHHHHHHHHhh
Q psy9383 11 FVSFSISPLGMRHFSELLDQLQ--FFEFIGRRDKFQDQSSFVIKQYD-NVEGADQPDLILEMLARLS 74 (133)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~~~~ig~r~~~~~~~~~~~~~Yd-~~~~~~d~DylleLL~Rlg 74 (133)
|+.+.=.|+--..+.+++..+. +-..|-.+.+. ++..+ ....+.+++.++++|..-.
T Consensus 25 ~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~-------~k~l~~~~~~~~s~~e~i~~l~~~p 84 (110)
T PF03960_consen 25 FIDYKKEPLSREELRELLSKLGNGPDDLINTRSKT-------YKELGKLKKDDLSDEELIELLLENP 84 (110)
T ss_dssp EEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHH-------HHHTTHHHCTTSBHHHHHHHHHHSG
T ss_pred eehhhhCCCCHHHHHHHHHHhcccHHHHhcCccch-------HhhhhhhhhhhhhhHHHHHHHHhCh
Confidence 4566667888888888888887 67777665443 34444 3335668889999998844
No 39
>PRK00811 spermidine synthase; Provisional
Probab=27.37 E-value=36 Score=27.10 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHhhhhcccchhhhhcccccccccCCCCchhHHHHH
Q psy9383 61 DQPDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 61 ~d~DylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
.|+-.-.|+|..+.- - .-++-|++||+|.|-|.....++||
T Consensus 57 ~de~~Y~e~l~h~~~---~--~~~~p~~VL~iG~G~G~~~~~~l~~ 97 (283)
T PRK00811 57 RDEFIYHEMMTHVPL---F--AHPNPKRVLIIGGGDGGTLREVLKH 97 (283)
T ss_pred cchhhHHHHhhhHHH---h--hCCCCCEEEEEecCchHHHHHHHcC
Confidence 343334566665441 1 1235689999999999998888887
No 40
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=26.24 E-value=42 Score=26.05 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.0
Q ss_pred hcccccccccCCCCchhHHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
+.|++|.+|-+-|||+..-|+++
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l 67 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL 67 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS
T ss_pred CCceEEEeccccccHHHHHHHhh
Confidence 58999999999999998877653
No 41
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=26.15 E-value=25 Score=25.66 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=18.8
Q ss_pred hcccccccccCCCCchhHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+.+++||+|-|.|..+...|++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~ 108 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKE 108 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHH
Confidence 3468999999999998888875
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=25.68 E-value=29 Score=25.60 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.1
Q ss_pred cccccccccCCCCchhHHHHH
Q psy9383 86 SKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 86 ~KR~lDfGL~RG~SGsqaAKh 106 (133)
.+++||+|-|-|.....+|+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~ 51 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA 51 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC
Confidence 479999999999998888774
No 43
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=23.79 E-value=43 Score=26.91 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=18.8
Q ss_pred hcccccccccCCCCchhHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+.|++|.+|-+.|||+..-|+.
T Consensus 79 ~ak~iLEiGT~~GySal~la~a 100 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALA 100 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhh
Confidence 4899999999999999876654
No 44
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.79 E-value=62 Score=26.40 Aligned_cols=62 Identities=27% Similarity=0.309 Sum_probs=37.0
Q ss_pred ccchhhhhhcccccCCCChHHHHHHHHHhhhhcc----cchhhh---hcccccccccCCCCchhHHHHHHhhhh
Q psy9383 45 DQSSFVIKQYDNVEGADQPDLILEMLARLSQSIL----RENDLE---NSKRGLDLGLSRGFSGSQAAKHLMGLA 111 (133)
Q Consensus 45 ~~~~~~~~~Yd~~~~~~d~DylleLL~Rlg~sil----~~~dLe---~~KR~lDfGL~RG~SGsqaAKh~mGLa 111 (133)
...-||||+|+. ...-..|.+.-+..++++.+. +++-+. ..|.- ++.=..-||||+.+++||
T Consensus 164 ~~~~~liNq~~~-~s~l~~D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~----v~~yaP~S~Aa~D~~~LA 232 (243)
T PF06564_consen 164 AGHRFLINQYDP-ASQLQRDLLQVWRQSLGRLLPGVIHRDEAVAEALASGQP----VGEYAPHSQAAEDIQTLA 232 (243)
T ss_pred CCcEEEEeccCc-cchHHHHHHHHHHHhhccccceeeecchHHHHHHhcCCC----ccccCccCHHHHHHHHHH
Confidence 356899999999 556666765544444553221 233332 12322 122356789999999987
No 45
>PRK04457 spermidine synthase; Provisional
Probab=23.68 E-value=30 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=19.7
Q ss_pred hhcccccccccCCCCchhHHHHHH
Q psy9383 84 ENSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 84 e~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
++.|++||+|+|-|......+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~ 88 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL 88 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC
Confidence 356899999999999888777764
No 46
>PF06515 BDV_P10: Borna disease virus P10 protein; InterPro: IPR009485 This family consists of several Borna disease virus P10 (or X) proteins. Borna disease virus (BDV) is unique among the non-segmented negative-strand RNA viruses of animals and man because it transcribes and replicates its genome in the nucleus of the infected cell. It has been suggested that the p10 protein plays a role in viral RNA synthesis or ribonucleoprotein transport [].
Probab=23.50 E-value=75 Score=23.51 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhh
Q psy9383 64 DLILEMLARLSQ 75 (133)
Q Consensus 64 DylleLL~Rlg~ 75 (133)
--|||||+||+-
T Consensus 7 LTLLELiRRlNG 18 (87)
T PF06515_consen 7 LTLLELIRRLNG 18 (87)
T ss_pred hHHHHHHHHhcC
Confidence 468999999874
No 47
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=23.34 E-value=35 Score=25.34 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=19.3
Q ss_pred hhhcccccccccCCCCchhHHHHH
Q psy9383 83 LENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 83 Le~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+....|+||+|-|-|+.....|+.
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~ 98 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEI 98 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHH
Confidence 345679999999999988776664
No 48
>PRK01581 speE spermidine synthase; Validated
Probab=23.07 E-value=51 Score=28.90 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=32.2
Q ss_pred cCCCChHHHHHHHHHhhhhcccchhhhhcccccccccCCCCchhHHHHHH
Q psy9383 58 EGADQPDLILEMLARLSQSILRENDLENSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 58 ~~~~d~DylleLL~Rlg~sil~~~dLe~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
-.+.|+..--|+|.... |. -..+.||+|++|.|-|++-..+.||.
T Consensus 128 ~se~DE~iYHE~Lvhp~---m~--~h~~PkrVLIIGgGdG~tlrelLk~~ 172 (374)
T PRK01581 128 FSSVDEQIYHEALVHPI---MS--KVIDPKRVLILGGGDGLALREVLKYE 172 (374)
T ss_pred cccccHHHHHHHHHHHH---HH--hCCCCCEEEEECCCHHHHHHHHHhcC
Confidence 34446666678887744 11 34567899999999999888888874
No 49
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=22.41 E-value=24 Score=26.08 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.7
Q ss_pred cccccccccCCCCchhHHHHH
Q psy9383 86 SKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 86 ~KR~lDfGL~RG~SGsqaAKh 106 (133)
.+++||+|-|.|......|++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~ 51 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN 51 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC
Confidence 578999999999987777764
No 50
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=21.84 E-value=37 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=17.8
Q ss_pred hcccccccccCCCCchhHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh 106 (133)
...++||+|-|-|+.....|+.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~ 93 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEA 93 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHh
Confidence 4568999999999988766654
No 51
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=21.81 E-value=38 Score=24.82 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.4
Q ss_pred hhcccccccccCCCCchhHHHH
Q psy9383 84 ENSKRGLDLGLSRGFSGSQAAK 105 (133)
Q Consensus 84 e~~KR~lDfGL~RG~SGsqaAK 105 (133)
....|+||+|-|.|+.....|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~ 98 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAH 98 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHH
Confidence 3457899999999998775554
No 52
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=21.54 E-value=68 Score=25.85 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.7
Q ss_pred hcccccccccCCCCchhHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+.|++|.+|-+-|||+..-|-+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~ 80 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALA 80 (219)
T ss_pred CCceEEEeecccCHHHHHHHhh
Confidence 5899999999999999776543
No 53
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=21.50 E-value=65 Score=24.06 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=18.9
Q ss_pred hcccccccccCCCCchhHHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKHL 107 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh~ 107 (133)
..+++||+|-|.|..+...|++.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~ 130 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER 130 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC
Confidence 45689999999998888777764
No 54
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=21.36 E-value=56 Score=21.24 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhcccchhhhhccccc
Q psy9383 64 DLILEMLARLSQSILRENDLENSKRGL 90 (133)
Q Consensus 64 DylleLL~Rlg~sil~~~dLe~~KR~l 90 (133)
+.+.+.|.++....++.+++++.|+.|
T Consensus 158 ~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 158 EAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 456666777777778889999887643
No 55
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=21.29 E-value=40 Score=24.28 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=20.1
Q ss_pred hcccccccccCCCCchhHHHHHHh
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKHLM 108 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh~m 108 (133)
..+++||+|-|-|.=|..+|++..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~ 54 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP 54 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST
T ss_pred cCCeEEEecCChHHHHHHHHHhCC
Confidence 678899999999998888887643
No 56
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=21.21 E-value=32 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=19.2
Q ss_pred hhhcccccccccCCCCchhHHHHH
Q psy9383 83 LENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 83 Le~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+....++||+|-|.|.-+..++++
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER 34 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc
Confidence 445568999999999988877765
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=21.04 E-value=64 Score=24.47 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=19.1
Q ss_pred hhhcccccccccCCCCchhHHHHH
Q psy9383 83 LENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 83 Le~~KR~lDfGL~RG~SGsqaAKh 106 (133)
++..+++||+|-|-|+.+...|++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~ 66 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIA 66 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHH
Confidence 334789999999999988877653
No 58
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=20.97 E-value=82 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.1
Q ss_pred hhhcccccccccCCCCchhHHHHH
Q psy9383 83 LENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 83 Le~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+.+.+++||+|-|-|+.....+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~ 64 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRL 64 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHh
Confidence 445678999999999988776665
No 59
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=20.85 E-value=39 Score=25.44 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=18.9
Q ss_pred hhhcccccccccCCCCchhHHHHH
Q psy9383 83 LENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 83 Le~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+....++||+|-|-||.....|+.
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~ 97 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEI 97 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHh
Confidence 345678999999999988766654
No 60
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=20.73 E-value=81 Score=22.72 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.6
Q ss_pred hcccccccccCCCCchhHHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAKh 106 (133)
+.+++||+|-|.|......+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~ 66 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL 66 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc
Confidence 4678999999999887776653
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=20.62 E-value=49 Score=27.78 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=20.6
Q ss_pred hhhhcccccccccCCCCchhHHHHH
Q psy9383 82 DLENSKRGLDLGLSRGFSGSQAAKH 106 (133)
Q Consensus 82 dLe~~KR~lDfGL~RG~SGsqaAKh 106 (133)
.+...+++||+|-|-|.-...+|++
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~ 188 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEH 188 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHH
Confidence 4455679999999999988888875
No 62
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.48 E-value=58 Score=27.78 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=13.0
Q ss_pred ccccCCCCchhHHHHHHhh
Q psy9383 91 DLGLSRGFSGSQAAKHLMG 109 (133)
Q Consensus 91 DfGL~RG~SGsqaAKh~mG 109 (133)
|||||||.+--..--|+.|
T Consensus 11 DFGLs~G~nyGIiea~~~G 29 (257)
T COG3394 11 DFGLSKGVNYGIIEAHRTG 29 (257)
T ss_pred ccCcCcccchhHHHHHhCC
Confidence 8999999875444444443
No 63
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=20.38 E-value=1.3e+02 Score=25.00 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.0
Q ss_pred hcccccccccCCCCchhHHHH
Q psy9383 85 NSKRGLDLGLSRGFSGSQAAK 105 (133)
Q Consensus 85 ~~KR~lDfGL~RG~SGsqaAK 105 (133)
...++||+|-|-|.-+...|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~ 151 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR 151 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH
Confidence 346899999999987655554
Done!