RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9383
         (133 letters)



>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
           {Escherichia coli [TaxId: 562]}
          Length = 182

 Score = 25.6 bits (56), Expect = 1.8
 Identities = 9/65 (13%), Positives = 20/65 (30%)

Query: 19  LGMRHFSELLDQLQFFEFIGRRDKFQDQSSFVIKQYDNVEGADQPDLILEMLARLSQSIL 78
           +     S L         +G   +   Q   +      +   +   LI E++  L++  +
Sbjct: 60  VSAEEKSALEKAQSALAELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSV 119

Query: 79  RENDL 83
            E   
Sbjct: 120 FEPGN 124


>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
           subunit 1 {Thermus thermophilus [TaxId: 274]}
          Length = 437

 Score = 24.4 bits (52), Expect = 5.2
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 63  PDLILEMLARLSQSILRE--NDLENSKRGLDLGLSRGFSGSQAAKHLMGLAAANYA 116
            + I EML R+  + L +    L        + L       +  + L  LAA N  
Sbjct: 8   EEEIREMLRRVGAASLEDLFAHLPKEILSPPIDLPEPLPEWKVLEELRRLAAQNLP 63


>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 23.6 bits (50), Expect = 8.7
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 36  FIGRRDKFQDQSSFVIKQYDNVEGADQPDLILEMLARLSQSILRENDLENSKRGLD 91
           FIG   K +  +  ++         +  +  LE L RL  +I ++ D E +K  +D
Sbjct: 152 FIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMD 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 454,021
Number of extensions: 18167
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 8
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)