BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9384
(978 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 173/368 (47%), Gaps = 43/368 (11%)
Query: 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
+T L++AA G + + LL+ A +N + TPL A+ GH+ +VKLLL++ A+ N
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 439 CSDMGGRTALRAAAWGGHLEVTIVL------------------------GPLCVVKLLLA 474
+ G T L AA GH+E + L G + V +LLL
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
AH NAA G T L + + + DIV +L + +G T L ++A
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA-----KQ 222
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
+V LL+ G + E +G+TPL +AA EGH ++ +LL +A+ + +KSG TPL
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 282
Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG 654
A GH +L+ G VD G T L VA+ GNI +V LL
Sbjct: 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--------- 333
Query: 655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG 714
D + G++PLH AA +GH ++ LL+ GA ++V +DG PL +A + G
Sbjct: 334 -----QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Query: 715 HYHLVEMF 722
+ + ++
Sbjct: 389 YISVTDVL 396
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 175/362 (48%), Gaps = 29/362 (8%)
Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
T L+VA+ G + V+ LL+ GA+ N ++ + TPL A+ GH+ V K LLQ+ A VN
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
+T L AA GH +VKLLL A+ N A + G T L +A GH
Sbjct: 76 KAKDDQTPLHCAARIGHTN---------MVKLLLENNANPNLATTAGHTPLHIAAREGHV 126
Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT 559
+ V ++LE +A G T L V+A G +V +LLE+ A + + G+T
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAA-----KYGKVRVAELLLERDAHPNAAGKNGLT 181
Query: 560 PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTI 619
PL VA + D+ ++LL +G TPL AA LL +G +
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
+G T L +AA +G+ ++V LL + + G+L + G TPLH A
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSK----------QANGNLG----NKSGLTPLHLVAQ 287
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
EGH V L++ G VD G PL +A+ G+ LV+ FL Q++A+VN K+ G +
Sbjct: 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYS 346
Query: 740 AL 741
L
Sbjct: 347 PL 348
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 139/287 (48%), Gaps = 20/287 (6%)
Query: 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD 516
L V +G L +VK LL GA N ++ + T L +A GH ++ +L+ A +N +
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
D +T L +A G+ +V +LLE A + G TPL +AA EGH + L
Sbjct: 78 KDDQTPLHCAARI-----GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
LE EA Q + K G TPL AA G LLL A+ + G T L VA N+
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
D+V LL RG G + + + G+TPLH AA + EV R+LL+ G
Sbjct: 193 DIVKLLLPRG-------GSPHSPAWN-------GYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
+ G PL LAAQ+GH +V + L + +AN N + G T L +
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHL 284
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 156/333 (46%), Gaps = 31/333 (9%)
Query: 334 SRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDA 393
+++ +Q+ LH + N++K L++ + L G T L++AA +G V+
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA--NPNLATTAGHTPLHIAAREGHVET 128
Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA-- 451
V LLE A+ +G+TPL A+ G V +LLL+ A N + G T L A
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 188
Query: 452 --------------------AWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
AW G+ L + + V + LL G NA +G T
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L +A GHA++V+ +L A+ N + G T L + A +G+ V +L++ G
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA-----QEGHVPVADVLIKHGVM 303
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
VD R G TPL VA+ G+ + + LL+++AD + K G +PL AA GH V LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA + + ++G T L++A G I V + L
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 14/201 (6%)
Query: 525 VSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD 584
++ L V S G+ +V LL++GA + + + TPL +AA GH +V + LL+N+A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 585 HIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
K +TPL AA +GH + V LLL A + G T L +AA +G+++ V LL+
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
+ C+ G+TPLH AA G V LLE A + +G
Sbjct: 135 KEASQACMT--------------KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL 180
Query: 705 APLILAAQDGHYHLVEMFLEQ 725
PL +A + +V++ L +
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPR 201
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGC 651
TPL A+ MGH V LL GA + + + T L +AA G+ +V LL +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 652 LAGGRQT-------------------GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692
A QT + + G TPLH AA EGH E ALLE
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
A + G PL +AA+ G + E+ LE+ +A+ N +G T L V
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHV 185
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 159/388 (40%), Gaps = 61/388 (15%)
Query: 625 TVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEE 684
T L VA+ G++ +V LL RG ++ + TPLH AA GH E
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRG-------ASPNVSNVKVE-------TPLHMAARAGHTE 61
Query: 685 VCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVN 744
V + LL+ AKV+ D + PL AA+ GH ++V++ LE AN N + G T L +
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIA 120
Query: 745 MKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHIL---R 801
+ + + +L+ L + TK T H++ + K R+ L R
Sbjct: 121 AR------------EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 802 KIISIANNE------HIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIH----------A 845
A + H+ + H++ L + + + N +H A
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 228
Query: 846 VDLSQRRQTSSSSAVPSATDEHFS-RDTHMRII-----------LGSSKVGEKISIAAQE 893
L Q ++++ +V T H + ++ H ++ LG+ + + AQE
Sbjct: 229 RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 288
Query: 894 GHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD--SEYFVHYYYY 951
GH +L+ +G + G VA+ G+ +++ L Q+ D ++ + Y
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 348
Query: 952 YNSAKSGH-ETVLRLLKQYADDIPVVSD 978
+ +A+ GH + V LLK A V SD
Sbjct: 349 HQAAQQGHTDIVTLLLKNGASPNEVSSD 376
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 871 DTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHET 930
D + + LG S + + AAQ+GH D V LLL GA P G +A + G+ +
Sbjct: 336 DVNAKTKLGYSPLHQ----AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391
Query: 931 VLRLLKQYADDSEYFV 946
V +LK D++ + +
Sbjct: 392 VTDVLKVVTDETSFVL 407
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+ L+E GA++N +D +G TPL A+ GH VVKLL+ GADVN D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
RT L AA GH E VVKLL++ GA VNA DS+GRT L +A GH ++V
Sbjct: 71 RTPLHHAAENGHKE---------VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
++ AD+N D+DGRT L ++ G +VV +L ++G
Sbjct: 122 LISKGADVNTSDSDGRTPLDLA-----REHGNEEVVKLLEKQGG 160
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 95/157 (60%), Gaps = 5/157 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
LI +A G+ D V ++E AD+N D+DGRT L +A +G+ +VV +L+ KGA
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAA-----ENGHKEVVKLLISKGAD 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ +D +G TPL AA GH++V ++L+ AD + D GRTPL AA GH V LL
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ GA V+T D++GRT L +A GN +VV L +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 97/159 (61%), Gaps = 14/159 (8%)
Query: 418 ASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA 477
A+ G+ VK L+++GADVN SD GRT L AA GH E VVKLL++ GA
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKE---------VVKLLISKGA 61
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
VNA DS+GRT L +A GH ++V ++ AD+N +D+DGRT L +A +G+
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA-----ENGHK 116
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+VV +L+ KGA V+ D +G TPL +A G+ +V ++L
Sbjct: 117 EVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 94/165 (56%), Gaps = 14/165 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
L+ AA G++D + L+EN AD + D GRTPL AA GH V LL+ GA V+ D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
++GRT L AA G+ +VV L+ +G D +D+ G TPLH+AA
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGA--------------DVNAKDSDGRTPLHHAAEN 113
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
GH+EV + L+ GA V+ D+DGR PL LA + G+ +V++ +Q
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 5/149 (3%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
VK L+ GA VNA+DS+GRT L +A GH ++V ++ AD+N +D+DGRT L +A
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA- 78
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+G+ +VV +L+ KGA V+ +D +G TPL AA GH++V ++L+ AD + D
Sbjct: 79 ----ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS 134
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVD 617
GRTPL A G+ V LL G +++
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 12/153 (7%)
Query: 351 CAEN-NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC 409
AEN N + +K +++ D+ D G+T L+ AA G + V++L+ GA++N D
Sbjct: 11 AAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
+G TPL A+ GH VVKLL+ GADVN D GRT L AA GH E VV
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE---------VV 119
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
KLL++ GA VN +DS+GRT L + G+ ++V
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEVV 152
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
L + +G V L+E GA V+ D +G TPL AA GH++V ++L+ AD + D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647
GRTPL AA GH V LL+ GA V+ D++GRT L AA G+ +VV L+ +G
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 648 ILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
D D+ G TPL A G+EEV + L + G
Sbjct: 128 --------------DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 15/148 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G+ V L+ GA V+ D++GRT L AA G+ +VV L+ +G
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D +D+ G TPLH+AA GH+EV + L+ GA V+ D+DGR PL AA++
Sbjct: 62 --------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTAL 741
GH +V++ + + A+VN DGRT L
Sbjct: 114 GHKEVVKLLISKG-ADVNTSDSDGRTPL 140
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
+ DS ++ LH + ++K + + D+ D G+T L+ AA G + V+
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLI--SKGADVNAKDSDGRTPLHHAAENGHKEVVK 87
Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
+L+ GA++N D +G TPL A+ GH VVKLL+ GADVN SD GRT L A G
Sbjct: 88 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 456 HLEVTIVL 463
+ EV +L
Sbjct: 148 NEEVVKLL 155
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
+ DS ++ LH + ++K + + D+ D G+T L+ AA G + V+
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLI--SKGADVNAKDSDGRTPLHHAAENGHKEVVK 120
Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
+L+ GA++N +D +G TPL A G+ VVKLL + G
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 8/98 (8%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL-KQYA 939
S++G+++ AA+ G++D V+ L+ GAD SD GR AA++GH+ V++LL + A
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 940 D----DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D DS+ ++ +A++GH+ V++LL D+
Sbjct: 62 DVNAKDSDGRTPLHH---AAENGHKEVVKLLISKGADV 96
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL-KQYADDSEYFVHY 948
AA+ GH++ V+LL+ GAD D GR AA++GH+ V++LL + AD +
Sbjct: 77 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Query: 949 YYYYNSAKS-GHETVLRLLKQYA 970
+ A+ G+E V++LL++
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQG 159
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 119 bits (298), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+ L+E GA++N +D +G TPL A+ GH +VKLL+ GADVN D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
RT L AA GH E +VKLL++ GA VNA DS+GRT L +A GH +IV
Sbjct: 71 RTPLHYAAKEGHKE---------IVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
++ AD+N D+DGRT L ++ G ++V +L ++G
Sbjct: 122 LISKGADVNTSDSDGRTPLDLA-----REHGNEEIVKLLEKQGG 160
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 5/157 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
LI +A G+ D V ++E AD+N D+DGRT L +A +G+ ++V +L+ KGA
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAA-----KEGHKEIVKLLISKGAD 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ +D +G TPL AA EGH+++ ++L+ AD + D GRTPL AA GH V LL
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ GA V+T D++GRT L +A GN ++V L +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 14/165 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
L+ AA G++D + L+EN AD + D GRTPL AA GH V LL+ GA V+ D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
++GRT L AA +G+ ++V L+ +G D +D+ G TPLHYAA E
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGA--------------DVNAKDSDGRTPLHYAAKE 113
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
GH+E+ + L+ GA V+ D+DGR PL LA + G+ +V++ +Q
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G+ VK L+++GADVN SD GRT L AA GH E +VKLL++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKE---------IVKLLIS 58
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA DS+GRT L +A GH +IV ++ AD+N +D+DGRT L +A +
Sbjct: 59 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-----KE 113
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +L+ KGA V+ D +G TPL +A G+ ++ ++L
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
VK L+ GA VNA+DS+GRT L +A GH +IV ++ AD+N +D+DGRT L +A
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA- 78
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+G+ ++V +L+ KGA V+ +D +G TPL AA EGH+++ ++L+ AD + D
Sbjct: 79 ----KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDS 134
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVD 617
GRTPL A G+ V LL G +++
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 89/153 (58%), Gaps = 12/153 (7%)
Query: 351 CAEN-NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC 409
AEN N + +K +++ D+ D G+T L+ AA +G + V++L+ GA++N D
Sbjct: 11 AAENGNKDRVKDLIEN--GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
+G TPL A+ GH +VKLL+ GADVN D GRT L AA GH E +V
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE---------IV 119
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
KLL++ GA VN +DS+GRT L + G+ +IV
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEIV 152
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 84/148 (56%), Gaps = 15/148 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G+ V L+ GA V+ D++GRT L AA +G+ ++V L+ +G
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D +D+ G TPLHYAA EGH+E+ + L+ GA V+ D+DGR PL AA++
Sbjct: 62 --------DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTAL 741
GH +V++ + + A+VN DGRT L
Sbjct: 114 GHKEIVKLLISKG-ADVNTSDSDGRTPL 140
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
L + +G V L+E GA V+ D +G TPL AA EGH+++ ++L+ AD + D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647
GRTPL AA GH V LL+ GA V+ D++GRT L AA +G+ ++V L+ +G
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 648 ILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
D D+ G TPL A G+EE+ + L + G
Sbjct: 128 --------------DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
+ DS ++ LH E + ++K + + D+ D G+T L+ AA +G + V+
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
+L+ GA++N D +G TPL A+ GH +VKLL+ GADVN SD GRT L A G
Sbjct: 88 LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 456 HLEVTIVL 463
+ E+ +L
Sbjct: 148 NEEIVKLL 155
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
+ DS ++ LH E + ++K + + D+ D G+T L+ AA +G + V+
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
+L+ GA++N +D +G TPL A G+ +VKLL + G
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL-KQYA 939
S++G+++ AA+ G++D V+ L+ GAD SD GR AAK GH+ +++LL + A
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 940 D----DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D DS+ +Y +AK GH+ +++LL D+
Sbjct: 62 DVNAKDSDGRTPLHY---AAKEGHKEIVKLLISKGADV 96
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA+EGH++ V+LL+ GAD D GR AAK GH+ +++LL
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
AA+EGH++ V+LL+ GAD SD GR +A + G+E +++LL++
Sbjct: 110 AAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 119 bits (297), Expect = 1e-26, Method: Composition-based stats.
Identities = 66/142 (46%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D GWTPL A++ GH +V++LL++GADVN D G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T LR AA GHLE +V++LL GA VNA D EG T L +A GH +IV
Sbjct: 81 MTPLRLAALFGHLE---------IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+ AD+N QD G+TA +S
Sbjct: 132 LLKNGADVNAQDKFGKTAFDIS 153
Score = 100 bits (248), Expect = 5e-21, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA+ GHLE+ V++LL
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA D G T L +A GH +IV +L+ AD+N D +G T L ++A+
Sbjct: 69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.1 bits (240), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA G ++ V++LL+ GA++N D G TPLR A+ GH +V++
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN +DM G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKNGADVNANDMEGHTPLHLAAMFGHLE---------IVEVLLKNGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 96.7 bits (239), Expect = 6e-20, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D G T L ++A +G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF-----NGHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D GMTPL +AA GH ++ E+LL+N AD + D G TPL AA GH V +L
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.7 bits (221), Expect = 7e-18, Method: Composition-based stats.
Identities = 50/107 (46%), Positives = 67/107 (62%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ ED G TPL +AAF GH ++ E+LL+N AD + +D +G TPL AA
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL GA V+ D EG T L +AA G++++V LL G
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/162 (37%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D SG TPL AA GH V +LL GA V+ +D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA G++++V LL G D D G TPLH AA+
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGA--------------DVNANDMEGHTPLHLAAMF 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.3 bits (194), Expect = 9e-15, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ DA G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D+ G TPL AA+ GH E+ LL+ GA V+ D +G PL LAA
Sbjct: 72 --------DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L+ A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDN 156
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D+ + LH ++ +++ LK+ D+ VD G T L +AA G ++ V++LL+
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++N D EG TPL A+ GH +V++LL++GADVN D G+TA + G+ ++
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 460 TIVLGPL 466
+L L
Sbjct: 162 AEILQKL 168
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 870 RDTHMRIIL--GSSKVGEKIS------IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFR 921
RD +RI++ G+ E S +AA GH + V +LL GAD DH G R
Sbjct: 26 RDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLR 85
Query: 922 VAAKSGH-ETVLRLLKQYAD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
+AA GH E V LLK AD ++ + + +A GH E V LLK AD
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
S +G+K+ AA+ G +D VR+L+ GAD D G +AA +GH E V LLK A
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 940 D 940
D
Sbjct: 72 D 72
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + V +LL GAD D G+ AF ++ +G+E + +L++
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 92/164 (56%), Gaps = 14/164 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+ LLE GA+ N +D +G TPL A+ GH +VKLLL GAD N D G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
RT L AA GH E +VKLLL+ GA NA DS+GRT L +A GH +IV
Sbjct: 71 RTPLHYAAENGHKE---------IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
+L AD N D+DGRT L ++ G ++V +L ++G
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLA-----REHGNEEIVKLLEKQGG 160
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 14/165 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
L+ AA G++D + LLEN AD + D GRTPL AA GH V LLL GA + D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
++GRT L AA G+ ++V LL +G D +D+ G TPLHYAA
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGA--------------DPNAKDSDGRTPLHYAAEN 113
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
GH+E+ + LL GA + D+DGR PL LA + G+ +V++ +Q
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
LI +A G+ D V +LE AD N D+DGRT L +A +G+ ++V +LL KGA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAA-----ENGHKEIVKLLLSKGAD 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ +D +G TPL AA GH+++ ++LL AD + D GRTPL AA GH V LL
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
L GA +T D++GRT L +A GN ++V L +G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 14/159 (8%)
Query: 418 ASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA 477
A+ G+ VK LL++GAD N SD GRT L AA GH E +VKLLL+ GA
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKE---------IVKLLLSKGA 61
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
NA DS+GRT L +A GH +IV +L AD N +D+DGRT L +A +G+
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-----ENGHK 116
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
++V +LL KGA + D +G TPL +A G+ ++ ++L
Sbjct: 117 EIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 5/149 (3%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
VK LL GA NA+DS+GRT L +A GH +IV +L AD N +D+DGRT L +A
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA- 78
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+G+ ++V +LL KGA + +D +G TPL AA GH+++ ++LL AD + D
Sbjct: 79 ----ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDS 134
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVD 617
GRTPL A G+ V LL G +++
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 351 CAEN-NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC 409
AEN N + +K L++ D D G+T L+ AA G + V++LL GA+ N D
Sbjct: 11 AAENGNKDRVKDLLEN--GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
+G TPL A+ GH +VKLLL GAD N D GRT L AA GH E +V
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE---------IV 119
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
KLLL+ GA N +DS+GRT L + G+ +IV
Sbjct: 120 KLLLSKGADPNTSDSDGRTPLDLAREHGNEEIV 152
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
L + +G V LLE GA + D +G TPL AA GH+++ ++LL AD + D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647
GRTPL AA GH V LLL GA + D++GRT L AA G+ ++V LL +G
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 648 ILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
D D+ G TPL A G+EE+ + L + G
Sbjct: 128 --------------DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 79/148 (53%), Gaps = 15/148 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G+ V LL GA + D++GRT L AA G+ ++V LL +G
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D +D+ G TPLHYAA GH+E+ + LL GA + D+DGR PL AA++
Sbjct: 62 --------DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTAL 741
GH +V++ L + A+ N DGRT L
Sbjct: 114 GHKEIVKLLLSKG-ADPNTSDSDGRTPL 140
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
DS ++ LH + ++K L + D D G+T L+ AA G + V++LL
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLL--SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA+ N D +G TPL A+ GH +VKLLL GAD N SD GRT L A G+ E+
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEI 151
Query: 460 TIVL 463
+L
Sbjct: 152 VKLL 155
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 8/91 (8%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL----- 935
S++G+++ AA+ G++D V+ LL GADP SD GR AA++GH+ +++LL
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 936 KQYADDSEYFVHYYYYYNSAKSGHETVLRLL 966
A DS+ +Y +A++GH+ +++LL
Sbjct: 62 DPNAKDSDGRTPLHY---AAENGHKEIVKLL 89
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
DS ++ LH + ++K L + D D G+T L+ AA G + V++LL
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLL--SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
GA+ N +D +G TPL A G+ +VKLL + G
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR-LLKQYADDSEYFVHY 948
AA+ GH++ V+LLL GADP D GR AA++GH+ +++ LL + AD +
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 949 YYYYNSAKS-GHETVLRLLKQYA 970
+ A+ G+E +++LL++
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQG 159
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+ LLE GA++N +D +G TPL A+ GH VVKLLL GAD N D G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
+T L AA GH E VVKLLL+ GA NA DS+G+T L +A GH ++V
Sbjct: 71 KTPLHLAAENGHKE---------VVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
+L AD N D+DGRT L ++ G +VV +L ++G
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLA-----REHGNEEVVKLLEKQGG 160
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 95/157 (60%), Gaps = 5/157 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
LI +A G+ D V +LE AD+N D+DG+T L ++A +G+ +VV +LL +GA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAA-----ENGHKEVVKLLLSQGAD 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ +D +G TPL +AA GH++V ++LL AD + D G+TPL AA GH V LL
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
L GA +T D++GRT L +A GN +VV L +G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 92/165 (55%), Gaps = 14/165 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
L+ AA G++D + LLEN AD + D G+TPL AA GH V LLL GA + D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
++G+T L +AA G+ +VV LL +G D +D+ G TPLH AA
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGA--------------DPNAKDSDGKTPLHLAAEN 113
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
GH+EV + LL GA + D+DGR PL LA + G+ +V++ +Q
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 96/162 (59%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G+ VK LL++GADVN SD G+T L AA GH E VVKLLL+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKE---------VVKLLLS 58
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA NA DS+G+T L +A GH ++V +L AD N +D+DG+T L ++A +
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA-----EN 113
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ +VV +LL +GA + D +G TPL +A G+ +V ++L
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 5/149 (3%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
VK LL GA VNA+DS+G+T L +A GH ++V +L AD N +D+DG+T L ++A
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA- 78
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+G+ +VV +LL +GA + +D +G TPL +AA GH++V ++LL AD + D
Sbjct: 79 ----ENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDS 134
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVD 617
GRTPL A G+ V LL G +++
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 12/153 (7%)
Query: 351 CAEN-NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC 409
AEN N + +K L++ D+ D G+T L++AA G + V++LL GA+ N D
Sbjct: 11 AAENGNKDRVKDLLEN--GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
+G TPL A+ GH VVKLLL GAD N D G+T L AA GH E VV
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKE---------VV 119
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
KLLL+ GA N +DS+GRT L + G+ ++V
Sbjct: 120 KLLLSQGADPNTSDSDGRTPLDLAREHGNEEVV 152
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
L + +G V LLE GA V+ D +G TPL +AA GH++V ++LL AD + D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647
G+TPL AA GH V LLL GA + D++G+T L +AA G+ +VV LL +G
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 648 ILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
D D+ G TPL A G+EEV + L + G
Sbjct: 128 --------------DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 81/148 (54%), Gaps = 15/148 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G+ V LL GA V+ D++G+T L +AA G+ +VV LL +G
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D +D+ G TPLH AA GH+EV + LL GA + D+DG+ PL LAA++
Sbjct: 62 --------DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTAL 741
GH +V++ L Q A+ N DGRT L
Sbjct: 114 GHKEVVKLLLSQG-ADPNTSDSDGRTPL 140
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
+ DS ++ LH L AEN + L S + D D G+T L++AA G + V+
Sbjct: 30 VNASDSDGKTPLH-LAAENGHKEVVKLLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
+LL GA+ N D +G TPL A+ GH VVKLLL GAD N SD GRT L A G
Sbjct: 88 LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147
Query: 456 HLEVTIVL 463
+ EV +L
Sbjct: 148 NEEVVKLL 155
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 11/98 (11%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR-LLKQYAD----D 941
+ +AA+ GH++ V+LLL GADP D G+ +AA++GH+ V++ LL Q AD D
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 942 SEYFVHYYYYYNSAKSGHETVLR-LLKQYADDIPVVSD 978
S+ + +A++GH+ V++ LL Q AD P SD
Sbjct: 101 SDGKTPLHL---AAENGHKEVVKLLLSQGAD--PNTSD 133
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
DS ++ LH L AEN + L S + D D G+T L++AA G + V++LL
Sbjct: 67 DSDGKTPLH-LAAENGHKEVVKLLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
GA+ N +D +G TPL A G+ VVKLL + G
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 9/97 (9%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR-LLKQYA 939
S++G+++ AA+ G++D V+ LL GAD SD G+ +AA++GH+ V++ LL Q A
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 940 D----DSEYFVHYYYYYNSAKSGHETVLR-LLKQYAD 971
D DS+ + +A++GH+ V++ LL Q AD
Sbjct: 62 DPNAKDSDGKTPLHL---AAENGHKEVVKLLLSQGAD 95
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYA 939
+ +AA+ GH++ V+LLL GADP SD GR +A + G+E V++LL++
Sbjct: 107 LHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 115 bits (287), Expect = 1e-25, Method: Composition-based stats.
Identities = 68/134 (50%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
+G+T L++AA G ++ V++LLEAGA++N D G TPL A+ GH VVKLLL++GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
VN D GRT L AA GHLE VVKLLL AGA VNA D GRT L +A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 497 GHADIVSSILEYDA 510
GH ++V +LE A
Sbjct: 112 GHLEVVKLLLEAGA 125
Score = 105 bits (263), Expect = 1e-22, Method: Composition-based stats.
Identities = 65/138 (47%), Positives = 85/138 (61%), Gaps = 14/138 (10%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
GRT L AA GHLEV VKLLL AGA VNA D GRT L +A GH ++V
Sbjct: 2 GRTPLHLAARNGHLEV---------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV 563
+LE AD+N +D +GRT L ++A +G+ +VV +LLE GA V+ +D+ G TPL +
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Query: 564 AAFEGHRDVCEILLENEA 581
AA GH +V ++LLE A
Sbjct: 108 AARNGHLEVVKLLLEAGA 125
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/130 (46%), Positives = 83/130 (63%), Gaps = 5/130 (3%)
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
GRT L +A GH ++V +LE AD+N +D +GRT L ++A +G+ +VV +LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLE 56
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
GA V+ +D+ G TPL +AA GH +V ++LLE AD + DK+GRTPL AA GH
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 606 VALLLFWGAY 615
V LLL GAY
Sbjct: 117 VKLLLEAGAY 126
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/136 (45%), Positives = 78/136 (57%), Gaps = 14/136 (10%)
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
+GRTPL AA GH V LLL GA V+ D GRT L +AA G+++VV LL+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
D +D G TPLH AA GH EV + LLEAGA V+ D +GR PL
Sbjct: 60 -------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Query: 709 LAAQDGHYHLVEMFLE 724
LAA++GH +V++ LE
Sbjct: 107 LAARNGHLEVVKLLLE 122
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
+GRT L ++A +G+ +VV +LLE GA V+ +D+ G TPL +AA GH +V ++LL
Sbjct: 1 NGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID 637
E AD + DK+GRTPL AA GH V LLL GA V+ D GRT L +AA G+++
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 638 VVNQLLDRG 646
VV LL+ G
Sbjct: 116 VVKLLLEAG 124
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/132 (45%), Positives = 81/132 (61%), Gaps = 11/132 (8%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH ++ ++K L++ D+ DK+G+T L++AA G ++ V++LLEAGA++N
Sbjct: 6 LHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D G TPL A+ GH VVKLLL++GADVN D GRT L AA GHLE
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE-------- 115
Query: 467 CVVKLLLAAGAH 478
VVKLLL AGA+
Sbjct: 116 -VVKLLLEAGAY 126
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/138 (46%), Positives = 78/138 (56%), Gaps = 14/138 (10%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
G TPL +AA GH +V ++LLE AD + DK+GRTPL AA GH V LLL GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ D GRT L +AA G+++VV LL+ G D +D G TPLH
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--------------DVNAKDKNGRTPLHL 107
Query: 677 AAIEGHEEVCRALLEAGA 694
AA GH EV + LLEAGA
Sbjct: 108 AARNGHLEVVKLLLEAGA 125
Score = 87.4 bits (215), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 15/125 (12%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
GRT L +AA G+++VV LL+ G D +D G TPLH AA GH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA--------------DVNAKDKNGRTPLHLAARNGH 47
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALR 742
EV + LLEAGA V+ D +GR PL LAA++GH +V++ LE A+VN K +GRT L
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLH 106
Query: 743 VNMKN 747
+ +N
Sbjct: 107 LAARN 111
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD--SEY 944
+ +AA+ GH + V+LLL GAD D GR +AA++GH V++LL + D ++
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 945 FVHYYYYYNSAKSGHETVLRLLKQYADDI 973
+ +A++GH V++LL + D+
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+ +AA+ GH + V+LLL GAD D GR +AA++GH V++LL
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 114 bits (285), Expect = 3e-25, Method: Composition-based stats.
Identities = 65/142 (45%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D GWTPL A++ GH +V++LL++GADVN D G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D G T L +A GH +IV
Sbjct: 81 STPLHLAAHFGHLE---------IVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+Y AD+N QD G+TA +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D+ G T L AA+ GHLE+ V++LL
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA D+ G T L +A+ GH +IV +L+ AD+N +D++G T L ++A +
Sbjct: 69 NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA-----NR 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 89.4 bits (220), Expect = 9e-18, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYW-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G TPL +AA GH ++ E+LL+N AD + D +G TPL AA+ GH V +L
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L +GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA+ G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKNGADVNAKDDNGITPLHLAANRGHLE---------IVEVLLKYGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISINNGNEDL 161
Score = 82.8 bits (203), Expect = 8e-16, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D G TPL AA GH V +LL GA V+ D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA G++++V LL G D +D+ G TPLH AA
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGA--------------DVNAKDDNGITPLHLAANR 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G TPLH AA GH E+ LL+ GA V+ D++G PL LAA
Sbjct: 72 --------DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L +Y A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KYGADVNAQDKFGKTAFDISINN 156
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 64/107 (59%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G TPL +AA+ GH ++ E+LL+N AD + D G TPL AA
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAH 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL GA V+ D G T L +AA +G++++V LL G
Sbjct: 90 FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Score = 69.7 bits (169), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH ++ +++ LK+ D+ D G T L++AAH G ++ V++LL+ GA++N
Sbjct: 51 LHLAAYWGHLEIVEVLLKN--GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA 108
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D G TPL A+ GH +V++LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
S +G+K+ AA+ G +D VR+L+ GAD +D G +AA GH E V LLK A
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 940 DDSEY-FVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
D + Y + + +A GH E V LLK AD
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + V +LL YGAD D G+ AF ++ +G+E + +L++
Sbjct: 117 LHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
+ +AA GH + V +LL GAD D G +AA GH ++ +L +Y D
Sbjct: 84 LHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 91/142 (64%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N TD +G+TPL A+ GH +V++LL++GADVN SD+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D++G T L +A GH +IV
Sbjct: 81 ITPLHLAAATGHLE---------IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L++ AD+N QD G+TA +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA+D G T L +A GH +IV +L++ AD+N DNDG T L ++A
Sbjct: 69 NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N DNDG T L ++A S+G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAA-----SNGHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G+TPL +AA GH ++ E+LL++ AD + D G TPL AA GH V +L
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
L GA V+ D G+T ++ GN D+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D +G T L +AA+ G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G TPLH AA GH E+ LL+ GA V+ DNDG PL LAA+
Sbjct: 72 --------DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L ++ A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 156
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA G ++ V++LL+ GA++N +D G TPL A+ GH +V++
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKHGADVNAYDNDGHTPLHLAAKYGHLE---------IVEVLLKHGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D G TPL AAS GH V +LL GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AAA G++++V LL G D DN G TPLH AA
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGA--------------DVNAYDNDGHTPLHLAAKY 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D +G TPL +AA GH ++ E+LL+N AD + D +G TPL AA+
Sbjct: 30 VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAA 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL GA V+ D +G T L +AA G++++V LL G
Sbjct: 90 TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 307 LSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSC 366
L ++LL + + EV + V+ D+ + LH + ++ +++ LK+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAT---DNDGYTPLHLAASNGHLEIVEVLLKN- 69
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
D+ D G T L++AA G ++ V++LL+ GA++N D +G TPL A+ GH +
Sbjct: 70 -GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEI 128
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
V++LL+ GADVN D G+TA + G+ ++ +L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD +D+ G +AA +GH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
AD ++ + +A +GH E V LLK AD
Sbjct: 71 ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ +AA GH + V +LL +GAD D+ G +AAK GH E V LLK AD
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936
+ +AA+ GH + V +LL +GAD D G+ AF ++ +G+E + +L+
Sbjct: 117 LHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 110 bits (276), Expect = 3e-24, Method: Composition-based stats.
Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI---------VEVLLK 56
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
AGA VNA D +G T L +A GH +IV +L+ AD+N +D DG T L ++A +
Sbjct: 57 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-----RE 111
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G TP +A EGH D+ E+L
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 106 bits (264), Expect = 7e-23, Method: Composition-based stats.
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D +G+TPL A+ GH +V++LL++GADVN D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL AGA VNA D +G T L +A GH +IV
Sbjct: 69 YTPLHLAAREGHLE---------IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+ AD+N QD G+T ++
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLA 141
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ DK G T L++AA +G ++ V++LL+AGA++N D +G+TPL A+ GH +V++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN D G T L AA GHLE +V++LL AGA VNA D G+T
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLAAREGHLE---------IVEVLLKAGADVNAQDKFGKTP 137
Query: 490 LIASAYMGHADI 501
+ GH DI
Sbjct: 138 FDLAIREGHEDI 149
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/162 (40%), Positives = 86/162 (53%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + DK G TPL AA GH V +LL GA V+ D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
+G T L +AA +G++++V LL G D +D G+TPLH AA E
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGA--------------DVNAKDKDGYTPLHLAARE 111
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+AGA V+ D G+ P LA ++GH + E+
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 99.4 bits (246), Expect = 9e-21, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D DG T L ++A +G+ ++V +LL+ GA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-----REGHLEIVEVLLKAGAD 60
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ +D++G TPL +AA EGH ++ E+LL+ AD + DK G TPL AA GH V +L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T +A +G+ D+ L
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 95.5 bits (236), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 84/154 (54%), Gaps = 14/154 (9%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ +D++G TPL +AA EGH ++ E+LL+ AD + DK G TPL AA
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659
GH V +LL GA V+ D +G T L +AA +G++++V LL G
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------------ 125
Query: 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG 693
D +D G TP A EGHE++ L +A
Sbjct: 126 --DVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 87.4 bits (215), Expect = 4e-17, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 15/153 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D +G T L +AA +G++++V LL G
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------ 59
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D +D G+TPLH AA EGH E+ LL+AGA V+ D DG PL LAA++
Sbjct: 60 --------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK 746
GH +VE+ L+ A+VN + G+T + ++
Sbjct: 112 GHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIR 143
Score = 83.2 bits (204), Expect = 7e-16, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + LH E ++ +++ LK+ D+ DK G T L++AA +G ++ V++LL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
AGA++N D +G+TPL A+ GH +V++LL++GADVN D G+T A GH ++
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 460 TIVL 463
VL
Sbjct: 150 AEVL 153
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD- 940
+G+K+ AA+ G +D VR+L+ GAD D G +AA+ GH E V LLK AD
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 941 DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
+++ Y + +A+ GH E V LLK AD
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 869 SRDTHMRIILGSSKVGEKIS-----------IAAQEGHEDCVRLLLHYGADPKHSDHCGR 917
+R+ H+ I+ K G ++ +AA+EGH + V +LL GAD D G+
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 918 NAFRVAAKSGHETVLRLLKQYA 939
F +A + GHE + +L++ A
Sbjct: 136 TPFDLAIREGHEDIAEVLQKAA 157
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 869 SRDTHMRIILGSSKVGEKIS-----------IAAQEGHEDCVRLLLHYGADPKHSDHCGR 917
+R+ H+ I+ K G ++ +AA+EGH + V +LL GAD D G
Sbjct: 43 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 918 NAFRVAAKSGH-ETVLRLLKQYAD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYA 970
+AA+ GH E V LLK AD +++ + + + GHE + +L++ A
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 110 bits (275), Expect = 4e-24, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N TD G TPL A+ GH +V++LL+ GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D EG T L +AY GH +IV
Sbjct: 81 ATPLHLAADNGHLE---------IVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+Y AD+N QD G+TA +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/124 (43%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D G T L +A GH +IV +L+Y AD+N DN G T L ++A
Sbjct: 30 VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA- 88
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+G+ ++V +LL+ GA V+ +D EG TPL +AA++GH ++ E+LL+ AD + DK
Sbjct: 89 ----DNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Query: 589 SGRT 592
G+T
Sbjct: 145 FGKT 148
Score = 97.8 bits (242), Expect = 3e-20, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA D+ G T L +A GH +IV +L++ AD+N +D +G T L ++A D
Sbjct: 69 YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAY-----D 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 90.1 bits (222), Expect = 6e-18, Method: Composition-based stats.
Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA+ GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKHGADVNAKDYEGFTPLHLAAYDGHLE---------IVEVLLKYGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D G TPL AA GH V +LL +GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA G++++V LL G D +D G+TPLH AA +
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGA--------------DVNAKDYEGFTPLHLAAYD 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 86.3 bits (212), Expect = 7e-17, Method: Composition-based stats.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAA-----KTGHLEIVEVLLKYGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G TPL +AA GH ++ E+LL++ AD + D G TPL AA GH V +L
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L +GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D DN G TPLH AA GH E+ LL+ GA V+ D +G PL LAA D
Sbjct: 72 --------DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L +Y A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDN 156
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G TPL +AA GH ++ E+LL+ AD + D G TPL AA
Sbjct: 30 VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAAD 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL GA V+ D EG T L +AA G++++V LL G
Sbjct: 90 NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH ++ +++ LK D+ D +G T L++AA G ++ V++LL+ GA++N
Sbjct: 51 LHLAAKTGHLEIVEVLLKY--GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNA 108
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D EG+TPL A++ GH +V++LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 109 KDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
S +G+K+ AA+ G +D VR+L+ GAD +D G +AAK+GH ++ +L +Y
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 941 DSEYFVHY--YYYYNSAKSGHETVLRLLKQYADDI 973
D + +Y + +A +GH ++ +L ++ D+
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA +GH + V +LL YGAD D G+ AF ++ +G+E + +L++
Sbjct: 117 LHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
+ +AA GH + V +LL +GAD D+ G +AA GH ++ +L +Y D
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 110 bits (275), Expect = 4e-24, Method: Composition-based stats.
Identities = 64/142 (45%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D +G+TPL A+ GH +V++LL++GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL AGA VNA D +G T L +A GH +IV
Sbjct: 81 YTPLHLAAREGHLE---------IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+ AD+N QD G+TA +S
Sbjct: 132 LLKAGADVNAQDKFGKTAFDIS 153
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
AGA VNA D +G T L +A GH +IV +L+ AD+N +D DG T L ++A +
Sbjct: 69 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-----RE 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ DK G T L++AA +G ++ V++LL+AGA++N D +G+TPL A+ GH +V++
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN D G T L AA GHLE +V++LL AGA VNA D G+TA
Sbjct: 99 LLKAGADVNAKDKDGYTPLHLAAREGHLE---------IVEVLLKAGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D DG T L ++A +G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-----REGHLEIVEVLLKAGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ +D++G TPL +AA EGH ++ E+LL+ AD + DK G TPL AA GH V +L
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + DK G TPL AA GH V +LL GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
+G T L +AA +G++++V LL G D +D G+TPLH AA E
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGA--------------DVNAKDKDGYTPLHLAARE 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+AGA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.4 bits (228), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D +G T L +AA +G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D +D G+TPLH AA EGH E+ LL+AGA V+ D DG PL LAA++
Sbjct: 72 --------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L+ A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLLKA-GADVNAQDKFGKTAFDISIDN 156
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 68/107 (63%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ +D++G TPL +AA EGH ++ E+LL+ AD + DK G TPL AA
Sbjct: 30 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL GA V+ D +G T L +AA +G++++V LL G
Sbjct: 90 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + LH E ++ +++ LK+ D+ DK G T L++AA +G ++ V++LL+
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
AGA++N D +G+TPL A+ GH +V++LL++GADVN D G+TA + G+ ++
Sbjct: 102 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 460 TIVL 463
+L
Sbjct: 162 AEIL 165
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
S +G+K+ AA+ G +D VR+L+ GAD D G +AA+ GH E V LLK A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 940 D-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
D +++ Y + +A+ GH E V LLK AD
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 869 SRDTHMRIILGSSKVGEKIS-----------IAAQEGHEDCVRLLLHYGADPKHSDHCGR 917
+R+ H+ I+ K G ++ +AA+EGH + V +LL GAD D G
Sbjct: 55 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 114
Query: 918 NAFRVAAKSGH-ETVLRLLKQYAD 940
+AA+ GH E V LLK AD
Sbjct: 115 TPLHLAAREGHLEIVEVLLKAGAD 138
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 869 SRDTHMRIILGSSKVGEKIS-----------IAAQEGHEDCVRLLLHYGADPKHSDHCGR 917
+R+ H+ I+ K G ++ +AA+EGH + V +LL GAD D G+
Sbjct: 88 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 147
Query: 918 NAFRVAAKSGHETVLRLLK 936
AF ++ +G+E + +L+
Sbjct: 148 TAFDISIDNGNEDLAEILQ 166
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N TD G TPL A+ GH +V++LL+ GADVN D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D+ G T L +A MGH +IV
Sbjct: 81 STPLHLAALIGHLE---------IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L++ AD+N QD G+TA +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA D G T L +A +GH +IV +L++ AD+N D G T L ++A+
Sbjct: 69 HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D SG TPL AA+ GH V +LL GA V+ ID
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA G++++V LL G D D G TPLH AAI
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGA--------------DVNAVDTWGDTPLHLAAIM 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D G T L ++A + G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAA-----TYGHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G TPL +AA GH ++ E+LL++ AD + +D G TPL AA MGH V +L
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKHGADVNAVDTWGDTPLHLAAIMGHLE---------IVEVLLKHGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G+TPL +AA GH ++ E+LL++ AD + ID G TPL AA
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAAL 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+GH V +LL GA V+ +D G T L +AA G++++V LL G
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ DA G T L +AA G++++V LL G + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI- 76
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D G TPLH AA+ GH E+ LL+ GA V+ VD G PL LAA
Sbjct: 77 -------------DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L ++ A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 156
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 307 LSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSC 366
L ++LL + + EV + V+ D+ + LH ++ +++ LK
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAT---DASGLTPLHLAATYGHLEIVEVLLK-- 68
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
D+ +D G T L++AA G ++ V++LL+ GA++N D G TPL A+ GH +
Sbjct: 69 HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 427 VKLLLQSGADVNCSDMGGRTAL 448
V++LL+ GADVN D G+TA
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAF 150
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD +D G +AA GH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVV 976
AD ++ + +A GH ++ +L ++ D+ V
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+AA GH + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 119 LAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA GH + V +LL +GAD D G +AA GH E V LLK AD
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 88/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N +D GWTPL A++ GH +V++LL++GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE VV++LL GA VNA D G T L +A +GH +IV
Sbjct: 81 VTPLHLAADRGHLE---------VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L++ AD+N QD G+TA +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN SD G T L AA+ GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA DS G T L +A GH ++V +L+ AD+N D++G T L ++A
Sbjct: 69 NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D+ G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYF-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ +D G+TPL +AA GH +V E+LL+N AD + D +G TPL AA++GH V +L
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
L GA V+ D G+T ++ GN D+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 5/141 (3%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA+D G T L +AY GH +IV +L+ AD+N D +L V+ L
Sbjct: 30 VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD-----SLGVTPL 84
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+ + G+ +VV +LL+ GA V+ D G TPL +AA GH ++ E+LL++ AD + DK
Sbjct: 85 HLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144
Query: 589 SGRTPLWAAASMGHASCVALL 609
G+T + G+ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA+ G ++ V++LL+ GA++N D G TPL A+ GH VV++
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN +D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKNGADVNANDHNGFTPLHLAANIGHLE---------IVEVLLKHGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D G TPL AA GH V +LL GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
+ G T L +AA +G+++VV LL G D D+ G+TPLH AA
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGA--------------DVNANDHNGFTPLHLAANI 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G TPL +AA+ GH ++ E+LL+N AD + D G TPL AA
Sbjct: 30 VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAAD 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL GA V+ D G T L +AA G++++V LL G
Sbjct: 90 RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D D+ GWTPLH AA GH E+ LL+ GA V+ D+ G PL LAA GH +VE+
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDL 777
L+ A+VN H+G T L + N+ L +L++ ++ F T D+
Sbjct: 99 LLKNG-ADVNANDHNGFTPLHL-AANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH ++ +++ LK+ D+ D G T L++AA +G ++ V++LL+ GA++N
Sbjct: 51 LHLAAYFGHLEIVEVLLKN--GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA 108
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D G+TPL A+ GH +V++LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD SDH G +AA GH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
AD +++ + + +A GH E V LLK AD
Sbjct: 71 ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ +AA GH + V +LL GAD +DH G +AA GH E V LLK AD
Sbjct: 84 LHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 117 LHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L+ GA V+ D+ G PL LAA GH +VE+ L+ A+VN
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG-ADVNADDSL 79
Query: 737 GRTALRV 743
G T L +
Sbjct: 80 GVTPLHL 86
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N TD G TPL A+ GH +V++LL+ GADVN D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D+ G T L +A MGH +IV
Sbjct: 81 STPLHLAALIGHLE---------IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L++ AD+N QD G+TA +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA D G T L +A +GH +IV +L++ AD+N D G T L ++A+
Sbjct: 69 HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D SG TPL AA+ GH V +LL GA V+ ID
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA G++++V LL G D D G TPLH AAI
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGA--------------DVNAVDTWGDTPLHLAAIM 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D G T L ++A + G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAA-----TYGHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G TPL +AA GH ++ E+LL++ AD + +D G TPL AA MGH V +L
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKHGADVNAVDTWGDTPLHLAAIMGHLE---------IVEVLLKHGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ DA G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G TPLH AA+ GH E+ LL+ GA V+ VD G PL LAA
Sbjct: 72 --------DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L ++ A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 156
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G+TPL +AA GH ++ E+LL++ AD + ID G TPL AA
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAAL 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+GH V +LL GA V+ +D G T L +AA G++++V LL G
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 307 LSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSC 366
L ++LL + + EV + V+ D+ + LH ++ +++ LK
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAT---DASGLTPLHLAATYGHLEIVEVLLK-- 68
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
D+ +D G T L++AA G ++ V++LL+ GA++N D G TPL A+ GH +
Sbjct: 69 HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 427 VKLLLQSGADVNCSDMGGRTA 447
V++LL+ GADVN D G+TA
Sbjct: 129 VEVLLKHGADVNAQDKFGKTA 149
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD +D G +AA GH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVV 976
AD ++ + + +A GH ++ +L ++ D+ V
Sbjct: 71 ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+AA GH + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 119 LAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 877 ILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLL 935
I+GS+ + +AA GH + V +LL +GAD D G +AA GH E V LL
Sbjct: 78 IMGSTP----LHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 936 KQYAD 940
K AD
Sbjct: 134 KHGAD 138
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D GWTPL A+ GH +V++LL++GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA+DS G T L +A GH +IV
Sbjct: 81 VTPLHLAARRGHLE---------IVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+ AD+N QD G+TA +S
Sbjct: 132 LLKNGADVNAQDKFGKTAFDIS 153
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA DS G T L +A GH +IV +L+ AD+N D+ G T L ++A
Sbjct: 69 NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA-----KR 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHF-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ +D G+TPL +AA GH ++ E+LL+N AD + D G TPL AA GH V +L
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AAH G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN SD G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKNGADVNASDSHGFTPLHLAAKRGHLE---------IVEVLLKNGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D +G TPL AA GH V +LL GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
+ G T L +AA +G++++V LL G D D+ G+TPLH AA
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGA--------------DVNASDSHGFTPLHLAAKR 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D +D+ G TPLH AA GH E+ LL+ GA V+ D+ G PL LAA+
Sbjct: 72 --------DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKR 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L+ A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDN 156
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G TPL +AA GH ++ E+LL+N AD + D G TPL AA
Sbjct: 30 VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAAR 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659
GH V +LL GA V+ D+ G T L +AA +G++++V LL G
Sbjct: 90 RGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA------------ 137
Query: 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
D +D G T + G+E++ L
Sbjct: 138 --DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH ++ +++ LK+ D+ D G T L++AA +G ++ V++LL+ GA++N
Sbjct: 51 LHLAAHFGHLEIVEVLLKN--GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNA 108
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
+D G+TPL A+ GH +V++LL++GADVN D G+TA + G+ ++ +L L
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD D G +AA GH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
AD +++ + + +A+ GH E V LLK AD
Sbjct: 71 ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD-DSEY 944
+ +AA+ GH + V +LL GAD SD G +AAK GH E V LLK AD +++
Sbjct: 84 LHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD 143
Query: 945 FVHYYYYYNSAKSGHETVLRLLKQ 968
+ S +G+E + +L++
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 107 bits (266), Expect = 5e-23, Method: Composition-based stats.
Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA+ N D G TPL A+ GH +V++LL++GADVN D G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D+ G T L +AY GH +IV
Sbjct: 69 TTPLHLAASLGHLE---------IVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L++ AD+N QD G+TA +S
Sbjct: 120 LLKHGADVNAQDKFGKTAFDIS 141
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GAD N D GRT L AA GHLE+ V++LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEI---------VEVLLR 56
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA D+ G T L +A +GH +IV +L+Y AD+N +D G T L ++A
Sbjct: 57 NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYW----- 111
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 112 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D D +G+T L++AA G ++ V++LL GA++N D G TPL A+ GH +V++
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA+ GHLE +V++LL GA VNA D G+TA
Sbjct: 87 LLKYGADVNAKDATGITPLYLAAYWGHLE---------IVEVLLKHGADVNAQDKFGKTA 137
Query: 490 LIASAYMGHADI 501
S +G+ D+
Sbjct: 138 FDISIDIGNEDL 149
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD N D+ GRT L ++A + G+ ++V +LL GA
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAA-----AVGHLEIVEVLLRNGAD 60
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G TPL +AA GH ++ E+LL+ AD + D +G TPL+ AA GH V +L
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T ++ GN D+ L
Sbjct: 121 LKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D GRTPL AA++GH V +LL GA V+ +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA+ G++++V LL G D +D G TPL+ AA
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGA--------------DVNAKDATGITPLYLAAYW 111
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ G+ L E+
Sbjct: 112 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 66/107 (61%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA + D G TPL +AA GH ++ E+LL N AD + +D +G TPL AAS
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAAS 77
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+GH V +LL +GA V+ DA G T L +AA G++++V LL G
Sbjct: 78 LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 77/152 (50%), Gaps = 15/152 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA + D GRT L +AAA G++++V LL G
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA------ 59
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G TPLH AA GH E+ LL+ GA V+ D G PL LAA
Sbjct: 60 --------DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYW 111
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNM 745
GH +VE+ L ++ A+VN + G+TA +++
Sbjct: 112 GHLEIVEVLL-KHGADVNAQDKFGKTAFDISI 142
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADD 941
+G+K+ AA+ G +D VR+L+ GAD DH GR +AA GH E V LL+ AD
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 942 SEYFVHYYYYYNSAKS-GHETVLRLLKQYADDI 973
+ + + A S GH ++ +L +Y D+
Sbjct: 62 NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ +AA GH + V +LL YGAD D G +AA GH E V LLK AD
Sbjct: 72 LHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936
+AA GH + V +LL +GAD D G+ AF ++ G+E + +L+
Sbjct: 107 LAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 106 bits (265), Expect = 6e-23, Method: Composition-based stats.
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D +G+TPL A+ GH +V++LL++GADVN D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL AGA VNA D +G T L +A GH +IV
Sbjct: 69 YTPLHLAAREGHLE---------IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+ AD+N QD G+T ++
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLA 141
Score = 106 bits (264), Expect = 7e-23, Method: Composition-based stats.
Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI---------VEVLLK 56
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
AGA VNA D +G T L +A GH +IV +L+ AD+N +D DG T L ++A +
Sbjct: 57 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-----RE 111
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G TP +A G+ D+ E+L
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D DG T L ++A +G+ ++V +LL+ GA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-----REGHLEIVEVLLKAGAD 60
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ +D++G TPL +AA EGH ++ E+LL+ AD + DK G TPL AA GH V +L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T +A GN D+ L
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ DK G T L++AA +G ++ V++LL+AGA++N D +G+TPL A+ GH +V++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN D G T L AA GHLE +V++LL AGA VNA D G+T
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLAAREGHLE---------IVEVLLKAGADVNAQDKFGKTP 137
Query: 490 LIASAYMGHADI 501
+ G+ DI
Sbjct: 138 FDLAIDNGNEDI 149
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + DK G TPL AA GH V +LL GA V+ D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
+G T L +AA +G++++V LL G D +D G+TPLH AA E
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGA--------------DVNAKDKDGYTPLHLAARE 111
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+AGA V+ D G+ P LA +G+ + E+
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 14/154 (9%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ +D++G TPL +AA EGH ++ E+LL+ AD + DK G TPL AA
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659
GH V +LL GA V+ D +G T L +AA +G++++V LL G
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------------ 125
Query: 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG 693
D +D G TP A G+E++ L +A
Sbjct: 126 --DVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D +G T L +AA +G++++V LL G
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------ 59
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D +D G+TPLH AA EGH E+ LL+AGA V+ D DG PL LAA++
Sbjct: 60 --------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L+ A+VN + G+T + + N
Sbjct: 112 GHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIDN 144
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + LH E ++ +++ LK+ D+ DK G T L++AA +G ++ V++LL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
AGA++N D +G+TPL A+ GH +V++LL++GADVN D G+T A G+ ++
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 460 TIVL 463
VL
Sbjct: 150 AEVL 153
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD- 940
+G+K+ AA+ G +D VR+L+ GAD D G +AA+ GH E V LLK AD
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 941 DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
+++ Y + +A+ GH E V LLK AD
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 869 SRDTHMRIILGSSKVGEKIS-----------IAAQEGHEDCVRLLLHYGADPKHSDHCGR 917
+R+ H+ I+ K G ++ +AA+EGH + V +LL GAD D G
Sbjct: 43 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 918 NAFRVAAKSGH-ETVLRLLKQYAD 940
+AA+ GH E V LLK AD
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGAD 126
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 869 SRDTHMRIILGSSKVGEKIS-----------IAAQEGHEDCVRLLLHYGADPKHSDHCGR 917
+R+ H+ I+ K G ++ +AA+EGH + V +LL GAD D G+
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 918 NAFRVAAKSGHETVLRLLKQYA 939
F +A +G+E + +L++ A
Sbjct: 136 TPFDLAIDNGNEDIAEVLQKAA 157
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 106 bits (265), Expect = 6e-23, Method: Composition-based stats.
Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D G TPL A+ GH +V++LL+ GADVN +D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D+ G T L +A GH +IV
Sbjct: 81 DTPLHLAALYGHLE---------IVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+Y AD+N QD G+TA +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D+ G+T L ++A+ G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAI-----KGHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D+ G TPL +AA GH ++ E+LL+N AD + D G TPL AA GH V +L
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L +GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 95.9 bits (237), Expect = 9e-20, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G+T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNAAD G T L +A GH +IV +L+ AD+N D G T L ++A
Sbjct: 69 HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA-----DA 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D G+T L +A GH +IV +L++ AD+N D G T L ++AL
Sbjct: 30 VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
G+ ++V +LL+ GA V+ D G TPL +AA GH ++ E+LL+ AD + DK
Sbjct: 90 Y-----GHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144
Query: 589 SGRT 592
G+T
Sbjct: 145 FGKT 148
Score = 89.7 bits (221), Expect = 7e-18, Method: Composition-based stats.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G+T L++AA +G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN +D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKNGADVNATDTYGFTPLHLAADAGHLE---------IVEVLLKYGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 60/162 (37%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D SG+TPL AA GH V +LL GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA G++++V LL G D D G+TPLH AA
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGA--------------DVNATDTYGFTPLHLAADA 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G+T L +AA +G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G TPLH AA+ GH E+ LL+ GA V+ D G PL LAA
Sbjct: 72 --------DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADA 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L +Y A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDN 156
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 65/107 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ ED G TPL +AA +GH ++ E+LL++ AD + DK G TPL AA
Sbjct: 30 VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL GA V+ D G T L +AA G++++V LL G
Sbjct: 90 YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D ++ LH + ++ +++ LK D+ DK G T L++AA G ++ V++LL+
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLK--HGADVNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++N TD G+TPL A+ GH +V++LL+ GADVN D G+TA + G+ ++
Sbjct: 102 NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 460 TIVLGPL 466
+L L
Sbjct: 162 AEILQKL 168
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
S +G+K+ AA+ G +D VR+L+ GAD D G+ +AA GH E V LLK A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 940 D 940
D
Sbjct: 72 D 72
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----D 941
+ +AA +GH + V +LL +GAD +D G +AA GH E V LLK AD D
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD 110
Query: 942 SEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
+ F + +A +GH ++ +L +Y D+
Sbjct: 111 TYGFTPLHL---AADAGHLEIVEVLLKYGADV 139
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + V +LL YGAD D G+ AF ++ +G+E + +L++
Sbjct: 117 LHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 36.6 bits (83), Expect = 0.067, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 879 GSSKVGEK-ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ K+G+ + +AA GH + V +LL GAD +D G +AA +GH ++ +L +
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 938 YADD 941
Y D
Sbjct: 135 YGAD 138
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 89/142 (62%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D G TPL A++ GH +V++LL+ GADV+ SD+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA+ GHLE +V++LL GA VNA DS+G T L +A G+ +IV
Sbjct: 81 YTPLHLAAYWGHLE---------IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L++ AD+N QD G+TA +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D G T L AA+ GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA V+A+D G T L +AY GH +IV +L+ AD+N D+DG T L ++A
Sbjct: 69 HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKW----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
GY ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N DN G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYS-----GHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
VD D G TPL +AA+ GH ++ E+LL+N AD + +D G TPL AA G+ V +L
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 81/132 (61%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA+ G ++ V++LL+ GA+++ +D G+TPL A++ GH +V++
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL++GADVN D G T L AA G+LE +V++LL GA VNA D G+TA
Sbjct: 99 LLKNGADVNAMDSDGMTPLHLAAKWGYLE---------IVEVLLKHGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G+TPLH AA GH E+ LL+ GA V+ +D+DG PL LAA+
Sbjct: 72 --------DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKW 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
G+ +VE+ L ++ A+VN + G+TA +++ N
Sbjct: 124 GYLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 156
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G TPL +AA+ GH ++ E+LL++ AD D D G TPL AA
Sbjct: 30 VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAY 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL GA V+ +D++G T L +AA G +++V LL G
Sbjct: 90 WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D +G TPL AA GH V +LL GA VD D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA G++++V LL G D D+ G TPLH AA
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGA--------------DVNAMDSDGMTPLHLAAKW 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
G+ E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 307 LSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSC 366
L ++LL + + EV + V+ D+ + LH ++ +++ LK
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAA---DNTGTTPLHLAAYSGHLEIVEVLLK-- 68
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
D++ D G T L++AA+ G ++ V++LL+ GA++N D +G TPL A+ G+ +
Sbjct: 69 HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEI 128
Query: 427 VKLLLQSGADVNCSDMGGRTAL 448
V++LL+ GADVN D G+TA
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAF 150
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G K+ AA+ G +D VR+L+ GAD +D+ G +AA SGH E V LLK
Sbjct: 11 GSDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
AD D+ Y + +A GH E V LLK AD
Sbjct: 71 ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA+ G+ + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 117 LHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ +AA GH + V +LL GAD D G +AAK G+ E V LLK AD
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D +G TPL A+W GH +V++LL+ GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D+ G T L +A GH +IV
Sbjct: 81 WTPLHLAADNGHLE---------IVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L++ AD+N QD G+TA +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AAW GH E+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA D++G T L +A GH +IV +L+Y AD+N QD G T L ++A
Sbjct: 69 HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA-----DR 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D +G T L +A++GH +IV +L++ AD+N +D DG T L ++A
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA- 88
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+G+ ++V +LL+ GA V+ +D G+TPL +AA GH ++ E+LL++ AD + DK
Sbjct: 89 ----DNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
Query: 589 SGRT 592
G+T
Sbjct: 145 FGKT 148
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++AA G + V++LL+ GA++N D +GWTPL A+ GH +V++
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKYGADVNAQDAYGLTPLHLAADRGHLE---------IVEVLLKHGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D+ G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWI-----GHPEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D +G TPL +AA GH ++ E+LL+ AD + D G TPL AA GH V +L
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D G TPL AA +GH V +LL GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
+G T L +AA G++++V LL G D +D G TPLH AA
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGA--------------DVNAQDAYGLTPLHLAADR 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D +G T L +AA G+ ++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D RD GWTPLH AA GH E+ LL+ GA V+ D G PL LAA
Sbjct: 72 --------DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L ++ A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 156
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 68/112 (60%)
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
G V IL+ GA V+ D +G TPL +AA+ GH ++ E+LL++ AD + D G TPL
Sbjct: 25 GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPL 84
Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
AA GH V +LL +GA V+ DA G T L +AA +G++++V LL G
Sbjct: 85 HLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 334 SRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDA 393
+ + D + + LH + +++ LK D+ D G T L++AA G ++
Sbjct: 38 ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK--HGADVNARDTDGWTPLHLAADNGHLEI 95
Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
V++LL+ GA++N D G TPL A+ GH +V++LL+ GADVN D G+TA +
Sbjct: 96 VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Query: 454 GGHLEVTIVLGPL 466
G+ ++ +L L
Sbjct: 156 NGNEDLAEILQKL 168
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD D G +AA GH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 939 AD----DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
AD D++ + + +A +GH ++ +L +Y D+
Sbjct: 71 ADVNARDTDGWTPLHL---AADNGHLEIVEVLLKYGADV 106
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ +AA GH + V +LL YGAD D G +AA GH E V LLK AD
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 117 LHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/142 (43%), Positives = 83/142 (58%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D G TPL GH ++++LL+ ADVN SD G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA+ GHLE +V++LL GA VNA D +G T L +A GH +IV
Sbjct: 81 WTPLHLAAYRGHLE---------IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+Y AD+N QD G+TA +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D G T L GHLE+ +++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEI---------IEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
A VNA+D G T L +AY GH +IV +L+Y AD+N D G T L ++A D
Sbjct: 69 YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA-----ED 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 90.5 bits (223), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D G T L++ + G ++ +++LL+ A++N +D GWTPL A++ GH +V++
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKYGADVNAMDYQGYTPLHLAAEDGHLE---------IVEVLLKYGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D G T L + ++G+ +++ +LL+ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVV-----NNGHLEIIEVLLKYAAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D+ G TPL +AA+ GH ++ E+LL+ AD + +D G TPL AA GH V +L
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L +GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G T L + G+++++ LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY-------- 69
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
+ D D GWTPLH AA GH E+ LL+ GA V+ +D G PL LAA+D
Sbjct: 70 ------AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L +Y A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDN 156
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 65/107 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G+TPL + GH ++ E+LL+ AD + DKSG TPL AA
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAY 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GH V +LL +GA V+ +D +G T L +AA G++++V LL G
Sbjct: 90 RGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D G TPL + GH + +LL + A V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA +G++++V LL G D D G+TPLH AA +
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGA--------------DVNAMDYQGYTPLHLAAED 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH + ++ +++ LK A D+ DK G T L++AA++G ++ V++LL+ GA++N
Sbjct: 51 LHLVVNNGHLEIIEVLLKY--AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA 108
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D +G+TPL A+ GH +V++LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 109 MDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
S +G+K+ AA+ G +D VR+L+ GAD +D G + +GH ++ +L +YA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 941 D--SEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D + + + +A GH ++ +L +Y D+
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA++GH + V +LL YGAD D G+ AF ++ +G+E + +L++
Sbjct: 117 LHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
+ +AA GH + V +LL YGAD D+ G +AA+ GH ++ +L +Y D
Sbjct: 84 LHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D G TPL A+ GH +V++LL++GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D+ G T L +A GH +IV
Sbjct: 81 STPLHLAAKRGHLE---------IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+Y AD+N QD G+TA +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA D G T L +A GH +IV +L+Y AD+N D G T L ++A
Sbjct: 69 NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA-----DT 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D +G T L++AA G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKYGADVNADDTIGSTPLHLAADTGHLE---------IVEVLLKYGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADI 501
S G+ D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARV-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G TPL +AA GH ++ E+LL+ AD + D G TPL AA GH V +L
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
L +GA V+ D G+T ++ GN D+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D G TPL AA +GH V +LL GA V+ +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA +G++++V LL G D D G TPLH AA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGA--------------DVNADDTIGSTPLHLAADT 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
GH E+ LL+ GA V+ D G+ ++ +G+ L E+
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 14/150 (9%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ ED G TPL +AA GH ++ E+LL+N AD + +D SG TPL AA
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659
GH V +LL +GA V+ D G T L +AA G++++V LL G
Sbjct: 90 RGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA------------ 137
Query: 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
D +D G T + G+E++ L
Sbjct: 138 --DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G T L +AA G++++V LL G + L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL- 76
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D G TPLH AA GH E+ LL+ GA V+ D G PL LAA
Sbjct: 77 -------------DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADT 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L +Y A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDN 156
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D+ + LH ++ +++ LK+ D+ +D G T L++AA +G ++ V++LL+
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKN--GADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++N D G TPL A+ GH +V++LL+ GADVN D G+TA + G+ ++
Sbjct: 102 YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 460 TIVL 463
+L
Sbjct: 162 AEIL 165
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD D G +AA+ GH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
AD ++ F + +AK GH ++ +L +Y D+
Sbjct: 71 ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD--SEYFV 946
+AA+ GH + V +LL GAD D G +AAK GH ++ +L +Y D ++ +
Sbjct: 53 LAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI 112
Query: 947 HYYYYYNSAKSGHETVLRLLKQYADDI 973
+ +A +GH ++ +L +Y D+
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADV 139
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 868 FSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSG 927
+ D + +GS+ + +AA GH + V +LL YGAD D G+ AF ++ +G
Sbjct: 102 YGADVNADDTIGSTP----LHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Query: 928 HETVLRLLK 936
+E + +L+
Sbjct: 158 NEDLAEILQ 166
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D G TPL A+ GH +V++LL+ GADV+ +D+ G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA GHLE +V++LL GA VNA D G T L +A GH +IV
Sbjct: 81 FTPLHLAAMTGHLE---------IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L+Y AD+N QD G+TA +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 5/149 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N DN G T L ++A+ G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVS-----GHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
VD D G TPL +AA GH ++ E+LL+ AD + D +G TPL AA GH V +L
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
L +GA V+ D G+T ++ GN D+
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 9/135 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ VD G T L++AA G ++ V++LL+ GA+++ D G+TPL A+ GH +V++
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN DM G T L AA GHLE +V++LL GA VNA D G+TA
Sbjct: 99 LLKYGADVNAFDMTGSTPLHLAADEGHLE---------IVEVLLKYGADVNAQDKFGKTA 149
Query: 490 LIASAYMGHADIVSS 504
S G+ D+ S
Sbjct: 150 FDISIDNGNEDLAKS 164
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ +D G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G+TPLH AA+ GH E+ LL+ GA V+ D G PL LAA +
Sbjct: 72 --------DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L +Y A+VN + G+TA +++ N
Sbjct: 124 GHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDN 156
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 14/160 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA V+AAD G T L +A GH +IV +L+Y AD+N D G T L ++A +
Sbjct: 69 HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA-----DE 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ +
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + +D +G TPL AA GH V +LL GA VD D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
G T L +AA G++++V LL G D D G TPLH AA E
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGA--------------DVNAFDMTGSTPLHLAADE 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVE 720
GH E+ LL+ GA V+ D G+ ++ +G+ L +
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 14/149 (9%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G+TPL +AA GH ++ E+LL++ AD D D G TPL AA
Sbjct: 30 VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659
GH V +LL +GA V+ D G T L +AA +G++++V LL G
Sbjct: 90 TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA------------ 137
Query: 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
D +D G T + G+E++ ++
Sbjct: 138 --DVNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD D+ G +AA SGH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
AD D+ + + +A +GH ++ +L +Y D+
Sbjct: 71 ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYF--V 946
+AA GH + V +LL +GAD +D G +AA +GH ++ +L +Y D F
Sbjct: 53 LAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT 112
Query: 947 HYYYYYNSAKSGHETVLRLLKQYADDI 973
+ +A GH ++ +L +Y D+
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADV 139
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR 933
+AA EGH + V +LL YGAD D G+ AF ++ +G+E + +
Sbjct: 119 LAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N TD G TPL A+ G +V++LL++GADVN SD G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
T L AA+ GHLE +V++LL GA VNA D G T L +A G +IV
Sbjct: 73 ITPLHLAAYDGHLE---------IVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+L++ AD+N QD G TA +S
Sbjct: 124 LLKHGADVNAQDALGLTAFDIS 145
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D G T L AA G LE+ V++LL
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEI---------VEVLLK 60
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
GA VNA+DS G T L +AY GH +IV +L++ AD+N D G T L ++AL
Sbjct: 61 NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS----- 115
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G ++V +LL+ GA V+ +D G+T ++ +G D+ EIL
Sbjct: 116 GQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 5/149 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D++G T L ++A ++G ++V +LL+ GA
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAA-----ANGQLEIVEVLLKNGAD 64
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G+TPL +AA++GH ++ E+LL++ AD + D++G TPL AA G V +L
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
L GA V+ DA G T ++ QG D+
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDL 153
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D +G T L++AA G ++ V++LL+ GA++N +D G TPL A++ GH +V++
Sbjct: 31 DVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEV 90
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LL+ GADVN D G T L AA G LE +V++LL GA VNA D+ G TA
Sbjct: 91 LLKHGADVNAYDRAGWTPLHLAALSGQLE---------IVEVLLKHGADVNAQDALGLTA 141
Query: 490 LIASAYMGHADI 501
S G D+
Sbjct: 142 FDISINQGQEDL 153
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D +G TPL AA+ G V +LL GA V+ D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
+ G T L +AA G++++V LL G D D GWTPLH AA+
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGA--------------DVNAYDRAGWTPLHLAALS 115
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
G E+ LL+ GA V+ D G ++ G L E+
Sbjct: 116 GQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 15/153 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA+ G V +L+ GA V+ D G T L +AAA G +++V LL G
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA------ 63
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D+ G TPLH AA +GH E+ LL+ GA V+ D G PL LAA
Sbjct: 64 --------DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS 115
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK 746
G +VE+ L ++ A+VN + G TA +++
Sbjct: 116 GQLEIVEVLL-KHGADVNAQDALGLTAFDISIN 147
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
L ++ G V IL+ GA V+ D G+TPL +AA G ++ E+LL+N AD + D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647
+G TPL AA GH V +LL GA V+ D G T L +AA G +++V LL G
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 648 ILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
D +D G T + +G E++ L
Sbjct: 130 --------------DVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 334 SRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDA 393
+ + D + LH A + +++ LK+ D+ D G T L++AA+ G ++
Sbjct: 30 ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA--DVNASDSAGITPLHLAAYDGHLEI 87
Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTAL 448
V++LL+ GA++N D GWTPL A+ G +V++LL+ GADVN D G TA
Sbjct: 88 VEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
G+ +L AAA G D V L+ G D D+ G TPLH AA G
Sbjct: 7 GKKLLEAAAA-GQDDEVRILMANGA--------------DVNATDDNGLTPLHLAAANGQ 51
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALR 742
E+ LL+ GA V+ D+ G PL LAA DGH +VE+ L ++ A+VN G T L
Sbjct: 52 LEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLH 110
Query: 743 V 743
+
Sbjct: 111 L 111
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD- 940
+G+K+ AA G +D VR+L+ GAD +D G +AA +G E V LLK AD
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 941 ---DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
DS + +A GH E V LLK AD
Sbjct: 66 NASDSAGITPLHL---AAYDGHLEIVEVLLKHGAD 97
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD-DSEYFV 946
+AA +GH + V +LL +GAD D G +AA SG E V LLK AD +++ +
Sbjct: 78 LAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDAL 137
Query: 947 HYYYYYNSAKSGHETVLRLLK 967
+ S G E + +L+
Sbjct: 138 GLTAFDISINQGQEDLAEILQ 158
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 15/225 (6%)
Query: 413 TPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLL 472
+PL +A+ GH + +L+Q+GA+++ RT L AA HLE VK L
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA---------VKYL 63
Query: 473 LAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY-DADINQQDNDGRTALSVSALCVP 531
+ AGA V+ D+EG T L +A GH ++V +L D+N QD+ G T + +
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA----- 118
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
+ + +V +LL KG+ ++ D E L AAF G D+ EILL + D ++ G
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
+PL AA CV L L + V + EG T L A+ +
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 15/231 (6%)
Query: 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
++ ++ ++ ++ L+ AA G VD +L++AGANI+ + TPL A+ H VK
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA-HVNAADSEGR 487
L+++GA V+ D G T L AA GH E VV+ LL+ G VN D G
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYE---------VVQYLLSNGQMDVNCQDDGGW 112
Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
T +I + H D+V +L +DIN +DN+ L +A G + ILL
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAF-----SGCVDIAEILLAAK 167
Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
+ + G +PL +AA E D + L ++D +K G TPL A+
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 23/214 (10%)
Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
K++H+++ +PL AA GH D+C +L++ A+ D + RTPL AA H V
Sbjct: 5 KMEHQNKR--SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG-MILGCLAGGRQTGSL------ 661
L+ GA VD DAEG T L +AA +G+ +VV LL G M + C G T +
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 662 -------------DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
D RDN LH+AA G ++ LL A + V+ G +PL
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALR 742
+AA++ Y V +FL + +++V K+ +G T L+
Sbjct: 183 IAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQ 215
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546
R+ L A+A GH DI +++ A+I+ D RT L +A + + + V L++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA-----ENNHLEAVKYLIKA 66
Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASC 605
GA VD +D EG T L +AA +GH +V + LL N + D + D G TP+ A H
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
V LLL G+ ++ D E L AA G +D+ LL D
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL--------------AAKCDLHA 172
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAA 711
+ G +PLH AA E + L + V + +G PL A+
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 15/202 (7%)
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
R+ L AAA GH+++ +L+ AGA+++ + RT L+ +A H + V
Sbjct: 12 RSPLHAAAEAGHVDI---------CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA-KVDHEDREGMTPLLV 563
+++ A ++ +D +G T L ++A G+ +VV LL G V+ +D G TP++
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAA-----KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117
Query: 564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
A H D+ ++LL +D + D L AA G +LL + ++ G
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177
Query: 624 RTVLSVAAAQGNIDVVNQLLDR 645
+ L +AA + D V L R
Sbjct: 178 DSPLHIAARENRYDCVVLFLSR 199
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 890 AAQEGHEDCVRLLLHYGA--DPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA+ H + V+ L+ GA DPK ++ G +AAK GH V++ L
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAE--GSTCLHLAAKKGHYEVVQYL 96
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 134/290 (46%), Gaps = 37/290 (12%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
D T L++AA V VQ+LL+ GA+++ D G PL +A GH V +LLL+ G
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL---- 490
A VN D+ T L AA +EV LLL+ GA + G++A+
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEV---------CSLLLSHGADPTLVNCHGKSAVDMAP 165
Query: 491 -------IASAYMGH--------ADI--VSSILEYDADINQQDNDGRTALSVSALCVPSS 533
+ + GH AD+ V L + +Q TAL + +
Sbjct: 166 TPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK 225
Query: 534 DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
+V +LL KGA V+ ++++ MTPL VAA H DV E+L ++ A + +D G+T
Sbjct: 226 --RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
L AA GH LLL +G+ I +G T AAQ + V Q+L
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFT-----AAQMGNEAVQQIL 328
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 131/320 (40%), Gaps = 56/320 (17%)
Query: 385 AAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG 443
AA G + + LL N + +D TPL A+ +V+LLLQ GADV+ D G
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
G L A GH EVT +LLL GA VNA D T L +A ++ S
Sbjct: 91 GLVPLHNACSYGHYEVT---------ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT---- 559
+L + AD + G++A+ ++ P+ E RE +T
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMA----PTP-------------------ELRERLTYEFK 178
Query: 560 --PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA---SCVALLLFWGA 614
LL AA E + L E +S T L A + H LLL GA
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238
Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
V+ + + T L VAA + + DV+ L G + L D+ G T L
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL--------------DSLGQTAL 284
Query: 675 HYAAIEGHEEVCRALLEAGA 694
H AA+ GH + CR LL G+
Sbjct: 285 HRAALAGHLQTCRLLLSYGS 304
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 120/285 (42%), Gaps = 26/285 (9%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + + LH N + +++ L+ D+ DK G L+ A G + ++LL+
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK 112
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD---VNCS-----DMGGRTALR-- 449
GA +N D +TPL A+ V LLL GAD VNC DM LR
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172
Query: 450 -AAAWGGH-LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL---IASAYMGHADIVSS 504
+ GH L L VK LA TAL +AS + +
Sbjct: 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVA 564
+L A++N+++ D T L V+A + V+ +L + GAK++ D G T L A
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAA-----ERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287
Query: 565 AFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
A GH C +LL +D I G + AA MG+ + +L
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQG----FTAAQMGNEAVQQIL 328
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 138/307 (44%), Gaps = 52/307 (16%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G+ + + ++L ++N +DGR + + L + + ++V +LL+ GA
Sbjct: 28 LLEAARSGNEEKLMALL-TPLNVNCHASDGRKS---TPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V +D+ G+ PL A GH +V E+LL++ A + +D TPL AAS +LL
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Query: 610 LFWGAYVDTIDAEGRTVLSVA---------------------AAQGNIDVVNQLLDRGMI 648
L GA ++ G++ + +A A + ++ V + L +I
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203
Query: 649 -----------LGCLAGG-------------RQTGSLDEQHRDNCGWTPLHYAAIEGHEE 684
L C R+ +++E+++D TPLH AA H +
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF--MTPLHVAAERAHND 261
Query: 685 VCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVN 744
V L + GAK++ +D+ G+ L AA GH + L Y ++ + S G TA ++
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQGFTAAQMG 320
Query: 745 MKNVTKL 751
+ V ++
Sbjct: 321 NEAVQQI 327
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFV 946
+ +AA+ H D + +L +GA D G+ A AA +GH RLL Y D
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII- 309
Query: 947 HYYYYYNSAKSGHETVLRLLKQ 968
+ +A+ G+E V ++L +
Sbjct: 310 -SLQGFTAAQMGNEAVQQILSE 330
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 23/291 (7%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
++ +L K +++L++ L+ ++ + ++ G T L+ A D V++LL G
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHG 82
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
A+ G TP A+ G ++KL L GADVN D G TA AA
Sbjct: 83 ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------- 133
Query: 462 VLGPLCVVKLLLAAGAHVN-----AADSE-----GRTALIASAYMGHADIVSSIL-EYDA 510
V G + +K L GA+VN D E G TAL+ +A GH +++ +L E A
Sbjct: 134 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 193
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
D+N DN GR AL + L SD A + +LL+ GA V+ G TPL++A + H
Sbjct: 194 DVNACDNMGRNALIHALLSSDDSDVEA-ITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252
Query: 571 DVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
+ + LLE E + + D G+T L A + LL GA D D
Sbjct: 253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 539 VVSILLEKGAKVDHEDREG-MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
+V LLE GA V+ ++ EG TPL A D+ E+LL + AD K+G TP A
Sbjct: 40 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99
Query: 598 ASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQ 657
A G + L L GA V+ D G T AA G + + L RG + R+
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL----RR 155
Query: 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAGAKVDQVDNDGR------------ 704
D++ G T L AA +GH EV + LL E GA V+ DN GR
Sbjct: 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 215
Query: 705 -------------------------APLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
PLILA + H LV+ LEQ +N DG+T
Sbjct: 216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 275
Query: 740 AL 741
AL
Sbjct: 276 AL 277
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRL-LKQYADDSEY-FVH 947
A Q ED V LLL +GADP G F +AA +G +L+L L + AD +E F
Sbjct: 66 AVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYG 125
Query: 948 YYYYYNSAKSGHETVLRLL 966
+ + +A G L+ L
Sbjct: 126 FTAFMEAAVYGKVKALKFL 144
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 23/291 (7%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
++ +L K +++L++ L+ ++ + ++ G T L+ A D V++LL G
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
A+ G TP A+ G ++KL L GADVN D G TA AA
Sbjct: 63 ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------- 113
Query: 462 VLGPLCVVKLLLAAGAHVN-----AADSE-----GRTALIASAYMGHADIVSSIL-EYDA 510
V G + +K L GA+VN D E G TAL+ +A GH +++ +L E A
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
D+N DN GR AL + L SD A + +LL+ GA V+ G TPL++A + H
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEA-ITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232
Query: 571 DVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
+ + LLE E + + D G+T L A + LL GA D D
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 539 VVSILLEKGAKVDHEDREGM-TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
+V LLE GA V+ ++ EG TPL A D+ E+LL + AD K+G TP A
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
Query: 598 ASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQ 657
A G + L L GA V+ D G T AA G + + L RG + R+
Sbjct: 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL----RR 135
Query: 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAGAKVDQVDNDGR------------ 704
D++ G T L AA +GH EV + LL E GA V+ DN GR
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195
Query: 705 -------------------------APLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
PLILA + H LV+ LEQ +N DG+T
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255
Query: 740 AL 741
AL
Sbjct: 256 AL 257
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRL-LKQYADDSEY-FVH 947
A Q ED V LLL +GADP G F +AA +G +L+L L + AD +E F
Sbjct: 46 AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105
Query: 948 YYYYYNSAKSGHETVLRLL 966
+ + +A G L+ L
Sbjct: 106 FTAFMEAAVYGKVKALKFL 124
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 9/102 (8%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
+G+T L++AA G ++ V++LLEAGA++N D G TPL A+ GH VVKLLL++GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH 478
VN D GRT L AA GHLE VVKLLL AGA+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGAY 93
Score = 80.1 bits (196), Expect = 6e-15, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
GRT L AA GHLEV VKLLL AGA VNA D GRT L +A GH ++V
Sbjct: 2 GRTPLHLAARNGHLEV---------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
+LE AD+N +D +GRT L ++A +G+ +VV +LLE GA
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLEAGA 92
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
+GRT L ++A +G+ +VV +LLE GA V+ +D+ G TPL +AA GH +V ++LL
Sbjct: 1 NGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
E AD + DK+GRTPL AA GH V LLL GAY
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 14/102 (13%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
GRT L +AA G+++VV LL+ G D +D G TPLH AA GH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA--------------DVNAKDKNGRTPLHLAARNGH 47
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
EV + LLEAGA V+ D +GR PL LAA++GH +V++ LE
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 57/90 (63%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
G TPL +AA GH +V ++LLE AD + DK+GRTPL AA GH V LLL GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ D GRT L +AA G+++VV LL+ G
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G TPLH AA GH EV + LLEAGA V+ D +GR PL LAA++GH +V++ LE A+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD 60
Query: 730 VNQKSHDGRTALRVNMKN 747
VN K +GRT L + +N
Sbjct: 61 VNAKDKNGRTPLHLAARN 78
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
+GRTPL AA GH V LLL GA V+ D GRT L +AA G+++VV LL+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
D +D G TPLH AA GH EV + LLEAGA
Sbjct: 60 -------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 66.2 bits (160), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH ++ ++K L++ D+ DK+G+T L++AA G ++ V++LLEAGA++N
Sbjct: 6 LHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
D G TPL A+ GH VVKLLL++GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD--SEY 944
+ +AA+ GH + V+LLL GAD D GR +AA++GH V++LL + D ++
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 945 FVHYYYYYNSAKSGHETVLRLL 966
+ +A++GH V++LL
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLL 87
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
+GR PL LAA++GH +V++ LE A+VN K +GRT L + +N
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN 45
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 31/233 (13%)
Query: 384 VAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG 443
A G + V LLE GA+IN+ + +G T L A + +VK L+++GA++N D
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL-----IASAYMGH 498
G L AAA G+L++ + L++ GAHV A +SEG T L A +
Sbjct: 106 GWIPLHAAASCGYLDIA---------EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 499 ADIVSSILEYDADINQQD----------------NDGRTALS-VSALCVPSSDGYAKVVS 541
++ ++ +A +++ ND R A S +AL V ++ GY +V+
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
+L++ V+ +D +G TPL AA G + C IL+EN D + ++K G+T
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 21/209 (10%)
Query: 533 SDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
S G + V LLE+GA +++ + +G+T L A + + D+ + L+EN A+ + D G
Sbjct: 49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI 108
Query: 593 PLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA-------------QG-NIDV 638
PL AAAS G+ L+ GA+V +++EG T L +A QG +I+
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 639 VNQLLDRGMILGCLAGGRQ---TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
+ +R M L RQ +G +++ G T LH AA +G+ EV + L++A
Sbjct: 169 ARKEEERIM----LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 696 VDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
V+ D DG PL AA G + +E
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 110/263 (41%), Gaps = 46/263 (17%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
+A+ G + V +LE ADIN + DG TAL + C+ D +V L+E GA
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CI---DDNVDMVKFLVENGAN 98
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL--------------- 594
++ D EG PL AA G+ D+ E L+ A ++ G TPL
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158
Query: 595 --------WAAASMGHASCVALLLFW---GAYVDTIDAE-GRTVLSVAAAQGNIDVVNQL 642
AA + W G D A+ G T L VAAA+G +V+ L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
+ D +D GWTPLH AA G EE CR L+E ++ V+
Sbjct: 219 I--------------QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264
Query: 703 GRAPLILAAQDGHYHLVEMFLEQ 725
G+ +A +D +L E+ +Q
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQ 287
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA 481
G + V LL+ GAD+N +++ G TAL A +++ +VK L+ GA++N
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVD---------MVKFLVENGANINQ 101
Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
D+EG L A+A G+ DI ++ A + +++G T L ++ +V
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161
Query: 542 ILLEKGAKVDHEDR----------------------EGMTPLLVAAFEGHRDVCEILLEN 579
++ A E+R G T L VAA +G+ +V ++L++
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221
Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
D + D G TPL AAA G +L+ ++ ++ G+T VA
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
K G TAL+VAA +G+ + +++L++A ++N D +GWTPL +A+ G ++L+++
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 436 DVNCSDMGGRTALRAA 451
D+ + G+TA A
Sbjct: 257 DMEAVNKVGQTAFDVA 272
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
D+ +TAL+ A G + V+ LL+ G +N D GW+PL A+ G +VK LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GA VN + G T L AA E+ + +LL GA+ +A D TA+ +
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAV---------MLLEGGANPDAKDHYEATAMHRA 146
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A G+ ++ +L Y A N QD +G T L ++ C AK +L+ +GA + E
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA--CDEERVEEAK---LLVSQGASIYIE 201
Query: 554 DREGMTPLLVA 564
++E TPL VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 483 DSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI 542
D + RTAL + GH +IV +L+ +N +D+ G + L ++A S G ++V
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-----SAGRDEIVKA 91
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
LL KGA+V+ ++ G TPL AA + ++ +LLE A+ D D T + AA+ G+
Sbjct: 92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151
Query: 603 ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ +LL++ A + D EG T L +A + ++ L+ +G
Sbjct: 152 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 494 AYMGH-ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
AY G ++ SIL + + D D RTAL + S G+ ++V LL+ G V+
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWAC-----SAGHTEIVEFLLQLGVPVND 68
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
+D G +PL +AA G ++ + LL A + ++++G TPL AAS +LL
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
GA D D T + AAA+GN+ +++ LL S + Q D G T
Sbjct: 129 GANPDAKDHYEATAMHRAAAKGNLKMIHILL------------YYKASTNIQ--DTEGNT 174
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
PLH A E E + L+ GA + + + + PL +A
Sbjct: 175 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
TD + T L A GH+ +V+ LLQ G VN D G + L AA G E
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE-------- 87
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
+VK LL GA VNA + G T L +A +I +LE A+ + +D+ TA+ +
Sbjct: 88 -IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 146
Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
A + G K++ ILL A + +D EG TPL +A E + ++L+ A
Sbjct: 147 A-----AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201
Query: 587 DKSGRTPLWAA 597
+K +TPL A
Sbjct: 202 NKEEKTPLQVA 212
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 16/180 (8%)
Query: 565 AFEGH-RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
A+ G ++ E +L +++ D+ RT L A S GH V LL G V+ D G
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 624 RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE 683
+ L +AA+ G ++V LL +G Q ++++ G TPLHYAA +
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGA---------QVNAVNQN-----GCTPLHYAASKNRH 119
Query: 684 EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
E+ LLE GA D D+ + AA G+ ++ + L Y+A+ N + +G T L +
Sbjct: 120 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYKASTNIQDTEGNTPLHL 178
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
D + RT L A + G+ ++V LL G+ + +D+ GW+PLH AA
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPV--------------NDKDDAGWSPLHIAAS 82
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
G +E+ +ALL GA+V+ V+ +G PL AA + + M LE AN + K H T
Sbjct: 83 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEAT 141
Query: 740 AL-RVNMKNVTKLSFWYLLIQPLLNI 764
A+ R K K+ L + NI
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNI 167
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D S LH + ++K L + + V+++G T L+ AA + + +LLE
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLG--KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GAN + D T + A+ G+ ++ +LL A N D G T L A +E
Sbjct: 128 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE- 186
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTAL-IASAYMG 497
KLL++ GA + + E +T L +A +G
Sbjct: 187 --------EAKLLVSQGASIYIENKEEKTPLQVAKGGLG 217
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
D+ +TAL+ A G + V+ LL+ G +N D GW+PL A+ G +VK LL
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GA VN + G T L AA E+ + +LL GA+ +A D TA+ +
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAV---------MLLEGGANPDAKDHYEATAMHRA 147
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A G+ ++ +L Y A N QD +G T L ++ C AK +L+ +GA + E
Sbjct: 148 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA--CDEERVEEAK---LLVSQGASIYIE 202
Query: 554 DREGMTPLLVA 564
++E TPL VA
Sbjct: 203 NKEEKTPLQVA 213
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 483 DSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI 542
D + RTAL + GH +IV +L+ +N +D+ G + L ++A S G ++V
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-----SAGRDEIVKA 92
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
LL KGA+V+ ++ G TPL AA + ++ +LLE A+ D D T + AA+ G+
Sbjct: 93 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 152
Query: 603 ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ +LL++ A + D EG T L +A + ++ L+ +G
Sbjct: 153 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 494 AYMGH-ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
AY G ++ SIL + + D D RTAL + S G+ ++V LL+ G V+
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWAC-----SAGHTEIVEFLLQLGVPVND 69
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
+D G +PL +AA G ++ + LL A + ++++G TPL AAS +LL
Sbjct: 70 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
GA D D T + AAA+GN+ +++ LL S + Q D G T
Sbjct: 130 GANPDAKDHYEATAMHRAAAKGNLKMIHILL------------YYKASTNIQ--DTEGNT 175
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
PLH A E E + L+ GA + + + + PL +A
Sbjct: 176 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
TD + T L A GH+ +V+ LLQ G VN D G + L AA G E
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE-------- 88
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
+VK LL GA VNA + G T L +A +I +LE A+ + +D+ TA+ +
Sbjct: 89 -IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 147
Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
A + G K++ ILL A + +D EG TPL +A E + ++L+ A
Sbjct: 148 A-----AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202
Query: 587 DKSGRTPLWAA 597
+K +TPL A
Sbjct: 203 NKEEKTPLQVA 213
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 16/180 (8%)
Query: 565 AFEGH-RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
A+ G ++ E +L +++ D+ RT L A S GH V LL G V+ D G
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 624 RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE 683
+ L +AA+ G ++V LL +G Q ++++ G TPLHYAA +
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGA---------QVNAVNQN-----GCTPLHYAASKNRH 120
Query: 684 EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
E+ LLE GA D D+ + AA G+ ++ + L Y+A+ N + +G T L +
Sbjct: 121 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYKASTNIQDTEGNTPLHL 179
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
D + RT L A + G+ ++V LL G+ + +D+ GW+PLH AA
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPV--------------NDKDDAGWSPLHIAAS 83
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
G +E+ +ALL GA+V+ V+ +G PL AA + + M LE AN + K H T
Sbjct: 84 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEAT 142
Query: 740 AL-RVNMKNVTKLSFWYLLIQPLLNI 764
A+ R K K+ L + NI
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNI 168
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D S LH + ++K L + + V+++G T L+ AA + + +LLE
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLG--KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 128
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GAN + D T + A+ G+ ++ +LL A N D G T L A +E
Sbjct: 129 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE- 187
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTAL-IASAYMG 497
KLL++ GA + + E +T L +A +G
Sbjct: 188 --------EAKLLVSQGASIYIENKEEKTPLQVAKGGLG 218
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
GA VNA+D GRT L +A +GH +IV +LEY AD+N QD G+TA +S
Sbjct: 69 HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
A G D V+IL+ GA++N D G TPL A+ GH +V++LL+ GADVN SD+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
RT L AA GHLE +V++LL GA VNA D G+TA S G+ D+
Sbjct: 81 RTPLHLAATVGHLE---------IVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 62/103 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G+TPL +AA GH ++ E+LL++ AD + D GRTPL AA+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
+GH V +LL +GA V+ D G+T ++ GN D+ L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D G T L +A GH +IV +L++ AD+N D GRT L ++A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA- 88
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+ G+ ++V +LLE GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 89 ----TVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D D+ G TPLH AA GH E+ LL+ GA V+ D GR PL LAA GH +VE+
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
LE Y A+VN + G+TA +++ N
Sbjct: 99 LLE-YGADVNAQDKFGKTAFDISIDN 123
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 61/97 (62%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ +D G T L++AA +G ++ V++LL+ GA++N +D G TPL A+ GH +V++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ + G D V ++ AD+N D+ G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA-----KRGHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
V+ D G TPL +AA GH ++ E+LLE AD + DK G+T
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 49/86 (56%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL A G D IL+ N AD + +D +G TPL AA GH V +LL GA V+ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
GRT L +AA G++++V LL+ G
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L A G V +L+ GA V+ +D G T L +AA +G++++V LL G
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G TPLH AA GH E+ LLE GA V+ D G+ ++ +
Sbjct: 72 --------DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Query: 714 GHYHLVEMF 722
G+ L E+
Sbjct: 124 GNEDLAEIL 132
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
A G ++ R L+ GA V+ +D+ G PL LAA+ GH +VE+ L ++ A+VN
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDIW 79
Query: 737 GRTALRV 743
GRT L +
Sbjct: 80 GRTPLHL 86
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
S +G+K+ A + G +D VR+L+ GAD D G +AAK GH E V LLK A
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 940 D-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D ++ + +A GH ++ +L +Y D+
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + V +LL YGAD D G+ AF ++ +G+E + +L++
Sbjct: 84 LHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
D+ +TAL+ A G + V+ LL+ G +N D GW+PL A+ G +VK LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GA VN + G T L AA E+ + +LL GA+ +A D TA+ +
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAV---------MLLEGGANPDAKDHYDATAMHRA 146
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A G+ +V +L Y A N QD +G T L ++ C AK L+ +GA + E
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA--CDEERVEEAK---FLVTQGASIYIE 201
Query: 554 DREGMTPLLVA 564
++E TPL VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 20/218 (9%)
Query: 494 AYMGHAD-IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
AY G D + IL + + D D RTAL + S G+ ++V LL+ G V+
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWAC-----SAGHTEIVEFLLQLGVPVND 68
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
+D G +PL +AA G ++ + LL A + ++++G TPL AAS +LL
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
GA D D T + AAA+GN+ +V+ LL S + Q D G T
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILL------------FYKASTNIQ--DTEGNT 174
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
PLH A E E + L+ GA + + + + PL +A
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
TD + T L A GH+ +V+ LLQ G VN D G + L AA G E
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE-------- 87
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
+VK LL GAHVNA + G T L +A +I +LE A+ + +D+ TA+ +
Sbjct: 88 -IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146
Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
A + G K+V ILL A + +D EG TPL +A E + + L+ A
Sbjct: 147 A-----AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 587 DKSGRTPLWAA 597
+K +TPL A
Sbjct: 202 NKEEKTPLQVA 212
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
D + RT L A + G+ ++V LL G+ + +D+ GW+PLH AA
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPV--------------NDKDDAGWSPLHIAAS 82
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
G +E+ +ALL GA V+ V+ +G PL AA + + M LE AN + K H T
Sbjct: 83 AGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDAT 141
Query: 740 AL-----RVNMKNVTKLSFW 754
A+ + N+K V L F+
Sbjct: 142 AMHRAAAKGNLKMVHILLFY 161
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D S LH + ++K L + + V+++G T L+ AA + + +LLE
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALL--VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GAN + D T + A+ G+ +V +LL A N D G T L A +E
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE- 186
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTAL-IASAYMG 497
K L+ GA + + E +T L +A +G
Sbjct: 187 --------EAKFLVTQGASIYIENKEEKTPLQVAKGGLG 217
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 83.6 bits (205), Expect = 5e-16, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
GA VNA D GRT L +A +GH +IV +LEY AD+N QD G+TA +S
Sbjct: 69 HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 51/117 (43%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
A G D V+IL+ GA++N D G TPL A+ GH +V++LL+ GADVN D+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
RT L AA GHLE +V++LL GA VNA D G+TA S G+ D+
Sbjct: 81 RTPLHLAATVGHLE---------IVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 62/103 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G+TPL +AA GH ++ E+LL++ AD + D GRTPL AA+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
+GH V +LL +GA V+ D G+T ++ GN D+ L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D G T L +A GH +IV +L++ AD+N +D GRT L ++A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA- 88
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+ G+ ++V +LLE GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 89 ----TVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D D+ G TPLH AA GH E+ LL+ GA V+ D GR PL LAA GH +VE+
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
LE Y A+VN + G+TA +++ N
Sbjct: 99 LLE-YGADVNAQDKFGKTAFDISIDN 123
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 60/97 (61%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ +D G T L++AA +G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ + G D V ++ AD+N D+ G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA-----KRGHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
V+ D G TPL +AA GH ++ E+LLE AD + DK G+T
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L A G V +L+ GA V+ +D G T L +AA +G++++V LL G
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D RD G TPLH AA GH E+ LLE GA V+ D G+ ++ +
Sbjct: 72 --------DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Query: 714 GHYHLVEMF 722
G+ L E+
Sbjct: 124 GNEDLAEIL 132
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 49/86 (56%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL A G D IL+ N AD + +D +G TPL AA GH V +LL GA V+ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
GRT L +AA G++++V LL+ G
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
A G ++ R L+ GA V+ +D+ G PL LAA+ GH +VE+ L ++ A+VN +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNARDIW 79
Query: 737 GRTALRV 743
GRT L +
Sbjct: 80 GRTPLHL 86
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
S +G+K+ A + G +D VR+L+ GAD D G +AAK GH E V LLK A
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 940 D-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D ++ + +A GH ++ +L +Y D+
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 871 DTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHET 930
D + R I G + + +AA GH + V +LL YGAD D G+ AF ++ +G+E
Sbjct: 72 DVNARDIWGRTP----LHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 931 VLRLLKQ 937
+ +L++
Sbjct: 128 LAEILQK 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
D+ +TAL+ A G + V+ LL+ G +N D GW+PL A+ G +VK LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GA VN + G T L AA E+ + +LL GA+ +A D TA+ +
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAV---------MLLEGGANPDAKDHYDATAMHRA 146
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A G+ +V +L Y A N QD +G T L ++ C AK L+ +GA + E
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA--CDEERVEEAK---FLVTQGASIYIE 201
Query: 554 DREGMTPLLVA 564
++E TPL VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 20/218 (9%)
Query: 494 AYMGHAD-IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
AY G D + IL + + D D RTAL + S G+ ++V LL+ G V+
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWAC-----SAGHTEIVEFLLQLGVPVND 68
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
+D G +PL +AA G ++ + LL A + ++++G TPL AAS +LL
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
GA D D T + AAA+GN+ +V+ LL S + Q D G T
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILL------------FYKASTNIQ--DTEGNT 174
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
PLH A E E + L+ GA + + + + PL +A
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
TD + T L A GH+ +V+ LLQ G VN D G + L AA G E
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE-------- 87
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
+VK LL GAHVNA + G T L +A +I +LE A+ + +D+ TA+ +
Sbjct: 88 -IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146
Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
A + G K+V ILL A + +D EG TPL +A E + + L+ A
Sbjct: 147 A-----AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 587 DKSGRTPLWAA 597
+K +TPL A
Sbjct: 202 NKEEKTPLQVA 212
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
D + RT L A + G+ ++V LL G+ + +D+ GW+PLH AA
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPV--------------NDKDDAGWSPLHIAAS 82
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
G +E+ +ALL GA V+ V+ +G PL AA + + M LE AN + K H T
Sbjct: 83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDAT 141
Query: 740 AL-----RVNMKNVTKLSFW 754
A+ + N+K V L F+
Sbjct: 142 AMHRAAAKGNLKMVHILLFY 161
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D S LH + ++K L + + V+++G T L+ AA + + +LLE
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALL--VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GAN + D T + A+ G+ +V +LL A N D G T L A +E
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE- 186
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTAL-IASAYMG 497
K L+ GA + + E +T L +A +G
Sbjct: 187 --------EAKFLVTQGASIYIENKEEKTPLQVAKGGLG 217
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
GA VNA+DS GRT L +A +GH +IV +LEY AD+N QD G+TA +S
Sbjct: 69 HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
A G D V+IL+ GA++N D G TPL A+ GH +V++LL+ GADVN SD G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
RT L AA GHLE +V++LL GA VNA D G+TA S G+ D+
Sbjct: 81 RTPLHLAATVGHLE---------IVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D G+TPL +AA GH ++ E+LL++ AD + D GRTPL AA+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
+GH V +LL +GA V+ D G+T ++ GN D+ L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D G T L +A GH +IV +L++ AD+N D+ GRT L ++A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LLE GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 90 V-----GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
D+ G TPLH AA GH E+ LL+ GA V+ D+ GR PL LAA GH +VE+ LE Y
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE-Y 102
Query: 727 EANVNQKSHDGRTALRVNMKN 747
A+VN + G+TA +++ N
Sbjct: 103 GADVNAQDKFGKTAFDISIDN 123
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 61/97 (62%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ +D G T L++AA +G ++ V++LL+ GA++N +D G TPL A+ GH +V++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ + G D V ++ AD+N D+ G T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA-----KRGHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D G TPL +AA GH ++ E+LLE AD + DK G+T + G+ +L
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL A G D IL+ N AD + +D +G TPL AA GH V +LL GA V+ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ GRT L +AA G++++V LL+ G
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L A G V +L+ GA V+ +D G T L +AA +G++++V LL G
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D+ G TPLH AA GH E+ LLE GA V+ D G+ ++ +
Sbjct: 72 --------DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Query: 714 GHYHLVEMF 722
G+ L E+
Sbjct: 124 GNEDLAEIL 132
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ A + G +D VR+L+ GAD D G +AAK GH E V LLK
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 939 AD--DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
AD S+ + + +A GH ++ +L +Y D+
Sbjct: 71 ADVNASDSWGRTPLHL-AATVGHLEIVEVLLEYGADV 106
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA 740
G ++ R L+ GA V+ +D+ G PL LAA+ GH +VE+ L ++ A+VN GRT
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTP 83
Query: 741 L 741
L
Sbjct: 84 L 84
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+AA GH + V +LL YGAD D G+ AF ++ +G+E + +L++
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
Query: 394 VQILLEAGANINHT-DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452
+ LL GA +N T D G T L A+ + K LL +GAD N D GRT L AA
Sbjct: 33 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA- 91
Query: 453 WGGHLEVTIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDAD 511
+ + V ++LL A ++NA +G T LI +A + +V ++ DAD
Sbjct: 92 --------VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 143
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
IN DN G+TAL +A + V+ILL A D +D + TPL +AA EG +
Sbjct: 144 INAADNSGKTALHWAAAV-----NNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE 198
Query: 572 VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ LL+N A+++ D R P A+ H V LL
Sbjct: 199 ASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
Query: 468 VVKLLLAAGAHVNAA-DSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
V+ LLA GA +NA D G T+L +A AD +L+ AD N QDN GRT L +
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
++D +L + ++ +G TPL++AA + E L+ +AD +
Sbjct: 92 V----AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 147
Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
D SG+T L AA++ + V +LL A D D + T L +AA +G+ + LLD
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 205
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 21/228 (9%)
Query: 499 ADIVSSILEYDADIN-QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
A ++S +L A++N D G T+L ++A A LL+ GA + +D G
Sbjct: 30 AQVISDLLAQGAELNATMDKTGETSLHLAARFA-----RADAAKRLLDAGADANSQDNTG 84
Query: 558 MTPLLVAAFEGHRDVCEILLENEADQDHIDK-SGRTPLWAAASMGHASCVALLLFWGAYV 616
TPL A V +ILL N A + G TPL AA + V L+ A +
Sbjct: 85 RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI 144
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ D G+T L AAA N + VN LL + D Q D+ TPL
Sbjct: 145 NAADNSGKTALHWAAAVNNTEAVNILL------------MHHANRDAQ--DDKDETPLFL 190
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
AA EG E +ALL+ A + D+ R P +A++ H+ +V + E
Sbjct: 191 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 21/209 (10%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+DK G+T+L++AA DA + LL+AGA+ N D G TPL +A V ++LL++
Sbjct: 47 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 106
Query: 434 GA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
A ++N G T L AA L +V+ L+ A A +NAAD+ G+TAL
Sbjct: 107 RATNLNARMHDGTTPLILAAR---------LAIEGMVEDLITADADINAADNSGKTALHW 157
Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK--- 549
+A + + + V+ +L + A+ + QD+ T L ++A +G + LL+ A
Sbjct: 158 AAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA-----REGSYEASKALLDNFANREI 212
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLE 578
DH DR P VA+ H D+ +L E
Sbjct: 213 TDHMDR---LPRDVASERLHHDIVRLLDE 238
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 20/199 (10%)
Query: 532 SSDGYAKVVSILLEKGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSG 590
+ D A+V+S LL +GA+++ D+ G T L +AA D + LL+ AD + D +G
Sbjct: 25 NEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTG 84
Query: 591 RTPLWAAASMGHASCVALLLFWGAYVDTIDA---EGRTVLSVAAAQGNIDVVNQLLDRGM 647
RTPL AA + +LL A ++A +G T L +AA +L GM
Sbjct: 85 RTPLHAAVAADAMGVFQILLRNRAT--NLNARMHDGTTPLILAA---------RLAIEGM 133
Query: 648 ILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
+ + T D DN G T LH+AA + E LL A D D+ PL
Sbjct: 134 VEDLI-----TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Query: 708 ILAAQDGHYHLVEMFLEQY 726
LAA++G Y + L+ +
Sbjct: 189 FLAAREGSYEASKALLDNF 207
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
D G T LH AA + + LL+AGA + DN GR PL A + ++ L
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 107
Query: 727 EANVNQKSHDGRTAL 741
N+N + HDG T L
Sbjct: 108 ATNLNARMHDGTTPL 122
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 32/202 (15%)
Query: 557 GMTPLLVAAFEGHR-DVCEILLENEADQDHI---------------DKSGRTPLWAAASM 600
G+TPL++AA G D E + NE + DK+G T L AA
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 601 GHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL-DRGMILGCLAGGRQTG 659
A LL GA ++ D GRT L A A + V LL +R L
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNA-------- 113
Query: 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLV 719
R + G TPL AA E + L+ A A ++ DN G+ L AA + V
Sbjct: 114 ------RMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAV 167
Query: 720 EMFLEQYEANVNQKSHDGRTAL 741
+ L + AN + + T L
Sbjct: 168 NILL-MHHANRDAQDDKDETPL 188
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 69/108 (63%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D +G T L +A +GH +IV +L+Y AD+N +DN G T L ++A+
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 90 -----RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/117 (43%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D +G TPL A+ GH +V++LL+ GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
T L AA GHLE +V++LL GA VNA D G+TA S G+ D+
Sbjct: 81 ITPLHLAAIRGHLE---------IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
GA VNA D+ G T L +A GH +IV +L++ AD+N QD G+TA +S
Sbjct: 69 YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 69.7 bits (169), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D DG T L ++A G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQL-----GHLEIVEVLLKYGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
V+ ED G+TPL +AA GH ++ E+LL++ AD + DK G+T
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 58/103 (56%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ D +G+TPL +AA GH ++ E+LL+ AD + D G TPL AA
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
GH V +LL GA V+ D G+T ++ GN D+ L
Sbjct: 90 RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.6 bits (161), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 60/97 (61%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ +D+ G T L++AA G ++ V++LL+ GA++N D G TPL A+ GH +V++
Sbjct: 39 DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 652 LAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAA 711
+A G +LDE G TPLH AA GH E+ LL+ GA V+ DN G PL LAA
Sbjct: 34 MANGADVNALDED-----GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 712 QDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
GH +VE+ L ++ A+VN + G+TA +++ N
Sbjct: 89 IRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 123
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ +D +G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D DN G TPLH AAI GH E+ LL+ GA V+ D G+ ++ +
Sbjct: 72 --------DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Query: 714 GHYHLVEMF 722
G+ L E+
Sbjct: 124 GNEDLAEIL 132
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 51/86 (59%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + +D+ G TPL AA +GH V +LL +GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
G T L +AA +G++++V LL G
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHG 103
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L+ GA V+ +D DG PL LAAQ GH +VE+ L +Y A+VN + +
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNF 79
Query: 737 GRTALRV 743
G T L +
Sbjct: 80 GITPLHL 86
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
S +G+K+ AA+ G +D VR+L+ GAD D G +AA+ GH ++ +L +Y
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 941 D--SEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D +E + +A GH ++ +L ++ D+
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Score = 37.0 bits (84), Expect = 0.049, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 84 LHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL GA++N D G TPL A+ GH +V++LL++GADVN + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
RT L AAW HLE +V++LL GA VNA D G+TA S G+ D+
Sbjct: 81 RTPLHLAAWADHLE---------IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L +GADVN +D G T L AA GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
GA VNA + GRT L +A+ H +IV +L++ AD+N QD G+TA +S
Sbjct: 69 NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L A GA VNA D G T L +A +GH +IV +L+ AD+N N GRT L ++A
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 90 A-----DHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 56/103 (54%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL GA V+ D G TPL +AA GH ++ E+LL+N AD + +GRTPL AA
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
H V +LL GA V+ D G+T ++ GN D+ L
Sbjct: 90 ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 365 SCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS 424
+ D+ D G T L++AA G ++ V++LL+ GA++N T G TPL A+W H
Sbjct: 34 TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHL 93
Query: 425 AVVKLLLQSGADVNCSDMGGRTAL 448
+V++LL+ GADVN D G+TA
Sbjct: 94 EIVEVLLKHGADVNAQDKFGKTAF 117
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D D G TPLH AA+ GH E+ LL+ GA V+ N GR PL LAA H +VE+
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
L ++ A+VN + G+TA +++ N
Sbjct: 99 LL-KHGADVNAQDKFGKTAFDISIDN 123
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V + AD+N D G T L ++A+ G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAML-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
V+ G TPL +AA+ H ++ E+LL++ AD + DK G+T
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 45/86 (52%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL N AD + D G TPL AA +GH V +LL GA V+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
GRT L +AA ++++V LL G
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHG 103
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L GA V+ D G T L +AA G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D N G TPLH AA H E+ LL+ GA V+ D G+ ++ +
Sbjct: 72 --------DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Query: 714 GHYHLVEMF 722
G+ L E+
Sbjct: 124 GNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L GAD +D+ G +AA GH E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 939 AD 940
AD
Sbjct: 71 AD 72
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L GA V+ D G PL LAA GH +VE+ L+ A+VN +
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG-ADVNATGNT 79
Query: 737 GRTALRV 743
GRT L +
Sbjct: 80 GRTPLHL 86
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA H + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 84 LHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ +AA GH + V +LL GAD + + GR +AA + H E V LLK AD
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D G TPL A+ GH +V++LL++GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
T L AA+ GHLE+ ++LL GA VNA D G+TA S G+ D+
Sbjct: 81 FTPLHLAAFIGHLEIA---------EVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 76.6 bits (187), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L A GHLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
GA VNA D+ G T L +A++GH +I +L++ AD+N QD G+TA +S
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ +D G+TPL +A GH ++ E+LL+N AD + +D G TPL AA
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
+GH +LL GA V+ D G+T ++ GN D+ L
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 59/97 (60%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D++G T L +A G ++ V++LL+ GA++N D G+TPL A++ GH + ++
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 66.2 bits (160), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D G T L ++ ++ G+ ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA-----TAHGHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
V+ D G TPL +AAF GH ++ E+LL++ AD + DK G+T
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D G T L + GH +IV +L+ AD+N D G T L ++A
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++ +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 90 I-----GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D +D G TPL+ A GH E+ LL+ GA V+ VD G PL LAA GH + E+
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
L ++ A+VN + G+TA +++ N
Sbjct: 99 LL-KHGADVNAQDKFGKTAFDISIGN 123
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G T L +A A G++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G+TPLH AA GH E+ LL+ GA V+ D G+ ++ +
Sbjct: 72 --------DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN 123
Query: 714 GHYHLVEMF 722
G+ L E+
Sbjct: 124 GNEDLAEIL 132
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 49/86 (56%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + D+ G TPL+ A + GH V +LL GA V+ +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
A G T L +AA G++++ LL G
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHG 103
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
S +G+K+ AA+ G +D VR+L+ GAD D G +A GH E V LLK A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 940 D-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D ++ + + + +A GH + +L ++ D+
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L+ GA V+ D G PL LA GH +VE+ L+ A+VN
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAI 79
Query: 737 GRTALRV 743
G T L +
Sbjct: 80 GFTPLHL 86
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 84 LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 76.6 bits (187), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 59/103 (57%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA V+ ED+ G+TPL +AA H ++ E+LL+N AD + ID G TPL A
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
GH V +LL GA V+ D G+T ++ GN D+ L
Sbjct: 90 YGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 75.9 bits (185), Expect = 9e-14, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D G TPL A+ H +V++LL++GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
T L A GHLE +V++LL GA VNA D G+TA S G+ D+
Sbjct: 81 ETPLHLVAMYGHLE---------IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA HLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
GA VNA D+ G T L A GH +IV +L++ AD+N QD G+TA +S
Sbjct: 69 NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D G T L +A H +IV +L+ AD+N D G T L + A+
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 90 Y-----GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D D G TPLH AA+ H E+ LL+ GA V+ +D G PL L A GH +VE+
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
L ++ A+VN + G+TA +++ N
Sbjct: 99 LL-KHGADVNAQDKFGKTAFDISIDN 123
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ DK G T L++AA ++ V++LL+ GA++N D G TPL + GH +V++
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D G T L ++A+ + + ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAM-----NDHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
V+ D G TPL + A GH ++ E+LL++ AD + DK G+T
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 47/86 (54%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + DK G TPL AA H V +LL GA V+ ID
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
A G T L + A G++++V LL G
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHG 103
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D G T L +AA ++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D D G TPLH A+ GH E+ LL+ GA V+ D G+ ++ +
Sbjct: 72 --------DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Query: 714 GHYHLVEMF 722
G+ L E+
Sbjct: 124 GNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
S +G+K+ AA+ G +D VR+L+ GAD D G +AA + H E V LLK A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 940 DDS------EYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D + E +H Y GH ++ +L ++ D+
Sbjct: 72 DVNAIDAIGETPLHLVAMY-----GHLEIVEVLLKHGADV 106
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L+ GA V+ D G PL LAA + H +VE+ L+ A+VN
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN-GADVNAIDAI 79
Query: 737 GRTALRV 743
G T L +
Sbjct: 80 GETPLHL 86
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 883 VGEK-ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+GE + + A GH + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVV 427
L + + + G + L+VAA G D + +LL+ GAN + + PL A GH VV
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 428 KLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGR 487
K LL S A N D+ G T L A GGH E +V LLL GA +NA++++G
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHE---------LVALLLQHGASINASNNKGN 186
Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
TAL + H +V +L + A + + RTA+ +
Sbjct: 187 TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 474 AAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
A+G VN +G + L +A G AD++ +L++ A+ ++ D L ++
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC-----Q 128
Query: 534 DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
G+ +VV LL+ AK + +D G TPL+ A GH ++ +LL++ A + + G T
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
L A H V LLL GA V ++ RT + A I
Sbjct: 189 LHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 6/151 (3%)
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
+N DG + L V+AL G A ++ +LL+ GA + + PL +A +GH
Sbjct: 79 VNVTSQDGSSPLHVAAL-----HGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 572 VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA 631
V + LL++ A + D SG TPL A S GH VALLL GA ++ + +G T L A
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193
Query: 632 AQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
+ ++ VV LL G + L RQ ++D
Sbjct: 194 IEKHVFVVELLLLHGASVQVL-NKRQRTAVD 223
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
+G +N T +G +PL A+ G + ++ LLL+ GA+ + L A GH +
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ- 133
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
VVK LL + A N D G T LI + GH ++V+ +L++ A IN +N G
Sbjct: 134 --------VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
TAL + + + + VV +LL GA V
Sbjct: 186 NTALHEAVI-----EKHVFVVELLLLHGASV 211
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
G V+ +G + L VAA G D++ LL G AG R
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN----AGARNADQ----------AV 121
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
PLH A +GH +V + LL++ AK ++ D G PLI A GH+ LV + L Q+ A++N
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL-QHGASINA 180
Query: 733 KSHDGRTAL 741
++ G TAL
Sbjct: 181 SNNKGNTAL 189
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647
+ G +PL AA G A + LLL GA +A+ L +A QG+ VV LLD
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD--- 140
Query: 648 ILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
+ +D G TPL YA GH E+ LL+ GA ++ +N G L
Sbjct: 141 -----------SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Query: 708 ILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
A + H +VE+ L + A+V + RTA+ +N
Sbjct: 190 HEAVIEKHVFVVELLL-LHGASVQVLNKRQRTAVDCAEQN 228
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
C P+ AKV + G V+ ++G +PL VAA G D+ +LL++ A+ +
Sbjct: 62 CAPAQKRLAKVPA----SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA 117
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
PL A GH V LL A + D G T L A + G+ ++V LL G
Sbjct: 118 DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
+ +N G T LH A IE H V LL GA V ++ R +
Sbjct: 178 INA--------------SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD 223
Query: 709 LAAQD 713
A Q+
Sbjct: 224 CAEQN 228
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYA 939
+ +A Q+GH V+ LL A P D G A GH ++ LL Q+
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D +G TPL A+ H +V++LL+ GADVN D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
T L AA GHLE +V++LL GA VNA D G+TA S G+ D+
Sbjct: 81 STPLHLAALFGHLE---------IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN +D G T L AA HLE+ V++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
GA VNA D++G T L +A GH +IV +L++ AD+N QD G+TA +S
Sbjct: 69 HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA VNA D +G T L +A H +IV +L++ AD+N DNDG T L ++AL
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL
Sbjct: 90 F-----GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%)
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
G V IL+ GA V+ DR+G TPL +AA H ++ E+LL++ AD + D G TPL
Sbjct: 25 GQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPL 84
Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
AA GH V +LL GA V+ D G+T ++ GN D+
Sbjct: 85 HLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ D+ G T L++AA ++ V++LL+ GA++N D +G TPL A+ GH +V++
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
LL+ GADVN D G+TA + G+ ++ +L L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
D G TPLH AA H E+ LL+ GA V+ DNDG PL LAA GH +VE+ L +
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL-K 101
Query: 726 YEANVNQKSHDGRTALRVNMKN 747
+ A+VN + G+TA +++ N
Sbjct: 102 HGADVNAQDKFGKTAFDISIDN 123
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N D G T L ++A + ++V +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADY-----DHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
V+ D +G TPL +AA GH ++ E+LL++ AD + DK G+T + G+ +L
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA V+ D +G T L +AA ++++V LL G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
D DN G TPLH AA+ GH E+ LL+ GA V+ D G+ ++ +
Sbjct: 72 --------DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Query: 714 GHYHLVEMF 722
G+ L E+
Sbjct: 124 GNEDLAEIL 132
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L+ GA V+ D G PL LAA H +VE+ L ++ A+VN +D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL-KHGADVNAHDND 79
Query: 737 GRTALRV 743
G T L +
Sbjct: 80 GSTPLHL 86
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
S +G+K+ AA+ G +D VR+L+ GAD +D G +AA H E V LLK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 939 AD------DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
AD D +H + GH E V LLK AD
Sbjct: 71 ADVNAHDNDGSTPLHLAALF-----GHLEIVEVLLKHGAD 105
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ +AA GH + V +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 84 LHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 16/181 (8%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
KN ++ K+ E +IN FL++ D + +T L VA G +A+ L+E
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLVENF 58
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
+ D EG T L A + + LL G++VN D G+T L W +I
Sbjct: 59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL---MW------SI 109
Query: 462 VLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
+ G + LL GA+VN + EG T LI ++ G ++IV +LE ADI+ +D G T
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLT 169
Query: 522 A 522
A
Sbjct: 170 A 170
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 405 NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLG 464
N+ D TPL A G + L+++ + D+ G TAL A L +
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIA---- 84
Query: 465 PLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALS 524
+ LL+ G++VN D G+T L+ S G++++ +LE+ A++N ++ +G T L
Sbjct: 85 -----EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLI 139
Query: 525 VSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
V+ S G +++V LLE GA + D G+T A G ++V +I E
Sbjct: 140 VA-----SKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 340 DSKNQSVLHKLCA---ENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQI 396
DS N++ L C EN I+ L E D+E G TAL A + +
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE-----GSTALIWAVKNNRLGIAEK 86
Query: 397 LLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456
LL G+N+N D G TPL + G+S + LL+ GA+VN ++ G T L A+ G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILE 507
E +VK LL GA ++A D G TA ++ G +++ E
Sbjct: 147 SE---------IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 19/179 (10%)
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
N +D+ RT L V+ + G + L+E K++ +D EG T L+ A +
Sbjct: 29 NYRDSYNRTPLMVACML-----GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGI 83
Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
E LL ++ + D SG+TPL + G++ LL GA V+ + EG T L VA+
Sbjct: 84 AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143
Query: 633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691
G ++V +LL+ G D RD G T A I G +EV + E
Sbjct: 144 YGRSEIVKKLLELGA--------------DISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 583 QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
+++ D RTPL A +G + + L+ ++ D EG T L A + + +L
Sbjct: 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
L +G + +D G TPL ++ I G+ E+ LLE GA V+ + +
Sbjct: 88 LSKGS--------------NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA 740
G PLI+A++ G +V+ LE A+++ + G TA
Sbjct: 134 GETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTA 170
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 14/174 (8%)
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
++ D TPL+VA G + + L+EN + D G T L A LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
G+ V+T D G+T L + G ++ LL+ G + R+ G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA--------------NVNDRNLEG 134
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
TPL A+ G E+ + LLE GA + D G A G ++++F E
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDE-QHRDNCGWTPLHYAA 678
D+ RT L VA G + +++L++ + D+ + +D G T L +A
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVE---------------NFDKLEDKDIEGSTALIWAV 76
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGR 738
+ LL G+ V+ D G+ PL+ + G Y + FL ++ ANVN ++ +G
Sbjct: 77 KNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG-YSEMSYFLLEHGANVNDRNLEGE 135
Query: 739 TALRVNMK 746
T L V K
Sbjct: 136 TPLIVASK 143
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 412 WTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
W+P+ A+ GH ++ L+ G VN + L A GGHL VK+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS---------CVKI 54
Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
LL GA VN ++ T L + G D V+ +L++ A + Q ++D + + +A
Sbjct: 55 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEAA---- 109
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
G+ + V+ L+ G +DH+ TPL +A R + LLE+ AD + K
Sbjct: 110 -RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQD 167
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
+PL A A LL+ +GA +AEG+ + + +
Sbjct: 168 SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
+P+ AA GH+ L+ + I +PL A GH SCV +LL GA V+
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+ A+ T L A G+ D VN LL G A + L +P+H AA
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHG------ASVQPESDLA---------SPIHEAA 109
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
GH E +L+ G +D + PL LA ++ V+ LE A+VNQ
Sbjct: 110 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVNQ 162
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 90/206 (43%), Gaps = 20/206 (9%)
Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
TA VS L G+ V ILL+ GA+V+ + TPL A G D +LL++
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 92
Query: 581 AD-QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
A Q D + +P+ AA GH CV L+ +G +D + T L +A V
Sbjct: 93 ASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 150
Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
+LL+ G A Q D +PLH A EE+ L++ GA
Sbjct: 151 KKLLESG------ADVNQGKGQD---------SPLHAVARTASEELACLLMDFGADTQAK 195
Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQ 725
+ +G+ P+ L + L ++FLE+
Sbjct: 196 NAEGKRPVELVPPES--PLAQLFLER 219
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 16/215 (7%)
Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
+ ++ AA G +++ L+ G +N + +PL A GGH + VK+LL+ GA VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN- 63
Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
G T A W L V G V LLL GA V +S+ + + +A GH
Sbjct: 64 ----GVT----ADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHV 114
Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT 559
+ V+S++ Y +I+ + + T L ++ + V LLE GA V+ + + +
Sbjct: 115 ECVNSLIAYGGNIDHKISHLGTPLYLAC-----ENQQRACVKKLLESGADVN-QGKGQDS 168
Query: 560 PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
PL A ++ +L++ AD + G+ P+
Sbjct: 169 PLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 19/202 (9%)
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
L+ +G V+ + ++PL A GH +ILL++ A + + TPL+ A G
Sbjct: 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81
Query: 603 ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
CV LLL GA V +++ + + AA +G+++ VN L+ G G++D
Sbjct: 82 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYG------------GNID 128
Query: 663 EQHRDNCGWTPLHYAAIEGHEEVC-RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
H+ + TPL Y A E + C + LLE+GA V+Q +PL A+ L +
Sbjct: 129 --HKISHLGTPL-YLACENQQRACVKKLLESGADVNQGKGQ-DSPLHAVARTASEELACL 184
Query: 722 FLEQYEANVNQKSHDGRTALRV 743
++ + A+ K+ +G+ + +
Sbjct: 185 LMD-FGADTQAKNAEGKRPVEL 205
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
+ L+ A G + V+ILL+ GA +N + TPL +A G V LLLQ GA V
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 440 -SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
SD+ + + AA GH+E V L+A G +++ S T L +
Sbjct: 98 ESDLA--SPIHEAARRGHVE---------CVNSLIAYGGNIDHKISHLGTPLYLACENQQ 146
Query: 499 ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGM 558
V +LE AD+NQ S L + ++ +L++ GA ++ EG
Sbjct: 147 RACVKKLLESGADVNQGKGQD------SPLHAVARTASEELACLLMDFGADTQAKNAEGK 200
Query: 559 TPLLVAAFEGHRDVCEILLENEA 581
P+ + E + ++ LE E
Sbjct: 201 RPVELVPPES--PLAQLFLEREG 221
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
W+P+H AAI GH+ R L+ G V+ + D +PL A GH V++ L ++ A V
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL-KHGAQV 62
Query: 731 NQKSHDGRTAL 741
N + D T L
Sbjct: 63 NGVTADWHTPL 73
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHS-DHCGRNAFRVAAKSGHETVLRLLKQYA 939
S + I AA+ GH +CV L+ YG + H H G + V +LL+ A
Sbjct: 99 SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Query: 940 DDSEYFVHYYYYYNSAKSGHETVLRLLKQYADD 972
D ++ + A++ E + LL + D
Sbjct: 159 DVNQGKGQDSPLHAVARTASEELACLLMDFGAD 191
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 554 DREGMTPLLVAAFEG-----HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
D +G TPL +A +G HR + + + + D + +TPL A S V L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHR-LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN 668
L+ GA +D G+T +A + + LLD G+LD + R+
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA----------APGTLDLEARNY 114
Query: 669 CGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD-NDGRAPLILAAQDGHYHLVEMFLEQYE 727
G T LH A +E + LLE GA +D VD GR+PLI A ++ +V++ L Q+
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHG 173
Query: 728 ANVNQKSHDGRTAL 741
ANVN + + G +AL
Sbjct: 174 ANVNAQMYSGSSAL 187
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 339 FDSKNQSVLHKLCAENNINLLKTFLKSCE--ALDLELVDKHGQTALNVAAHQGFVDAVQI 396
D Q+ H C + L+ L S LDLE + G TAL+VA + + VQ+
Sbjct: 75 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 134
Query: 397 LLEAGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
LLE GA+I+ D + G +PL A ++V+LLLQ GA+VN G +AL +A+ G
Sbjct: 135 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194
Query: 456 HLEVTIVL 463
L + L
Sbjct: 195 LLPLVRTL 202
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 41/235 (17%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILL----EAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
D+ G T L++A QG + AV L+ + G ++ + TPL A +VV+LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 431 LQSGADVNCSDMGGRTA--------------------------LRAAAWGGHLEVTIVLG 464
+ +GA D G+TA L A + G + + +
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 465 PLC--VVKLLLAAGAHVNAAD-SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
C V+LLL GA ++A D GR+ LI + +V +L++ A++N Q G +
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185
Query: 522 ALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
AL + S G +V L+ GA ++ TPL+VA R V +IL
Sbjct: 186 ALHSA-----SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS---RRVIDIL 232
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 102/247 (41%), Gaps = 54/247 (21%)
Query: 408 DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGR-----TALRAAAWGGHLEVTIV 462
D +G TPL A G+ V L VN GGR LR HL V
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRL------VNLFQQGGRELDIYNNLRQTPL--HLAVITT 57
Query: 463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTA 522
L VV+LL+ AGA A D G+TA A++ + R+
Sbjct: 58 LP--SVVRLLVTAGASPMALDRHGQTA----AHLA-------------------CEHRSP 92
Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR--EGMTPLLVAAFEGHRDVCEILLENE 580
+ AL ++ G +D E R +G+T L VA ++ ++LLE
Sbjct: 93 TCLRALLDSAAPG-------------TLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 581 ADQDHID-KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
AD D +D KSGR+PL A S V LLL GA V+ G + L A+ +G + +V
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV 199
Query: 640 NQLLDRG 646
L+ G
Sbjct: 200 RTLVRSG 206
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGA----NINHTDCEGWTPLRSASWGGHSAVVKL 429
+D+HGQTA ++A ++ LL++ A ++ + +G T L A V+L
Sbjct: 75 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 134
Query: 430 LLQSGADVNCSDM-GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
LL+ GAD++ D+ GR+ L A L + V+LLL GA+VNA G +
Sbjct: 135 LLERGADIDAVDIKSGRSPLIHAVENNSLSM---------VQLLLQHGANVNAQMYSGSS 185
Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
AL +++ G +V +++ AD + ++ T L V+
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 370 DLELVD-KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
D++ VD K G++ L A + VQ+LL+ GAN+N G + L SAS G +V+
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 200
Query: 429 LLLQSGAD 436
L++SGAD
Sbjct: 201 TLVRSGAD 208
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 110/259 (42%), Gaps = 55/259 (21%)
Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL 457
+ AGA++N DC+ TPL A +V L ++GAD + R+AL AA
Sbjct: 153 IAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDF 212
Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
+ L KL DI + D
Sbjct: 213 GXXVYX--LNSTKL-------------------------------------KGDIEELDR 233
Query: 518 DGRTALSVSALCVPSSDGYAKVVS--ILLEKGAKVDH--------EDREGMTPLLVAAFE 567
+G TAL + V ++G +V S +L+EKGAKVD+ E +G T L AA
Sbjct: 234 NGXTALXI----VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289
Query: 568 GHRDVCEILL-ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTV 626
+ + + L+ E +++D D+ G+TP+ AA G V L+ GA V+ +DA T
Sbjct: 290 SNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTA 349
Query: 627 LSVAAAQGNIDVVNQLLDR 645
+A A + ++V+ + DR
Sbjct: 350 RQLAQANNHHNIVD-IFDR 367
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCE-ALDLELVDKHGQTALNVAAHQGFVDAV- 394
T+++ +S LH+ A + L S + D+E +D++G TAL + AH D V
Sbjct: 193 TIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVA 252
Query: 395 --QILLEAGANINH-----TDCE---GWTPLRSASWGGHSAVVKLLL-QSGADVNCSDMG 443
++L+E GA +++ D E G T L A+ + +VK L+ + G++ + D
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDED 312
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
G+T + AA G +E VV L+ GA V A D+ TA + H +IV
Sbjct: 313 GKTPIXLAAQEGRIE---------VVXYLIQQGASVEAVDATDHTARQLAQANNHHNIV 362
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL-WAAASMGHASC 605
GA V+ D + TPL +A R + L + AD +KS R+ L AAA+
Sbjct: 156 GADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXX 215
Query: 606 VALL--LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQ---LLDRGMILGCLAGGRQTGS 660
V L ++ +D G T L + A D V L+++G + R+
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS- 274
Query: 661 LDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAGAKVDQVDNDGRAPLILAAQDGHYHLV 719
E+++ G T LHYAA + + + L+ E G+ D+ D DG+ P+ LAAQ+G +V
Sbjct: 275 --EKYK---GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
Query: 720 EMFLEQ 725
++Q
Sbjct: 330 XYLIQQ 335
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 47/259 (18%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
K +AAGA VNA D + T L + +V+ + + AD + R+AL +A
Sbjct: 149 AKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA- 207
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHE--DREGMTPLLVAAFEGHRD---VCEILLENEADQ 583
++ + V L K D E DR G T L + A RD ++L+E A
Sbjct: 208 ---ANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKV 264
Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
D+ D + R D+ +GRT L AA N +V L+
Sbjct: 265 DY-DGAARK------------------------DSEKYKGRTALHYAAQVSNXPIVKYLV 299
Query: 644 DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDG 703
G + + D+Q D G TP+ AA EG EV L++ GA V+ VD
Sbjct: 300 -----------GEKGSNKDKQDED--GKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
Query: 704 RAPLILAAQDGHYHLVEMF 722
LA + H+++V++F
Sbjct: 347 HTARQLAQANNHHNIVDIF 365
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
K ++ LH +N ++K +L + + + D+ G+T + +AA +G ++ V L++ G
Sbjct: 278 KGRTALHYAAQVSNXPIVK-YLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLL 430
A++ D T + A H +V +
Sbjct: 337 ASVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 10/188 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D +N ++LH N I+L+K ++ +D +L T L+ A QG + V L++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMK 97
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA+ + D EG + + A+ GH+++V L+ G DV+ D G T L AA+ H
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH--- 154
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGR-TALIASAYMGHADIVSSILEYDADINQQDND 518
+ +LLL VN D + TAL + G+ ++S +LE A+++ Q+
Sbjct: 155 -----SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK 209
Query: 519 GRTALSVS 526
G +AL ++
Sbjct: 210 GESALDLA 217
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE-GMTPLLV 563
++E D+ Q D + T L +A+ + +V + KGA VD + TPL
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAI-----NNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82
Query: 564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
A +GH + L++ AD ID G + + AA GH S VA L+ G VD +D G
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 624 RTVLSVAAAQG-NIDVVNQLL--DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
T L AA + ++D LL + + LG D+ H++ T LH+A +
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLG-----------DKYHKN----TALHWAVLA 187
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEA 728
G+ V LLEAGA VD + G + L LA Q + ++ E +A
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 91/214 (42%), Gaps = 19/214 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
A G + + L+EAG ++ D E T L A+ +VK + GA V+ +GG
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD--QLGG 73
Query: 445 ---RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
T L A GHL + + L+ GA + D EG + + +A GH I
Sbjct: 74 DLNSTPLHWATRQGHLSMVV---------QLMKYGADPSLIDGEGCSCIHLAAQFGHTSI 124
Query: 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR-EGMTP 560
V+ ++ D++ D +G T L +A S D +LL V+ D+ T
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD----PTRLLLTFNVSVNLGDKYHKNTA 180
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
L A G+ V +LLE A+ D + G + L
Sbjct: 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 552 HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
H D ++ A G + C L+E D DK T L AA V +
Sbjct: 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63
Query: 612 WGAYVDTIDAE-GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
GA VD + + T L A QG++ +V QL+ G D D G
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA--------------DPSLIDGEG 109
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
+ +H AA GH + L+ G VD +D +G PL+ AA H
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 878 LGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
LG + A ++GH V L+ YGADP D G + +AA+ GH +++ L
Sbjct: 71 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G+T L++A+ +G + +V+ LL+ G++ N D GWTPL A GH VV+LLLQ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
N + + L AA GH++ +VKLLL+ GA NA +
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVD---------IVKLLLSYGASRNAVN 106
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 15/109 (13%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
G T+L +A+ +G+I V LL Q GS D +D+ GWTPLH A GH
Sbjct: 10 GETLLHIASIKGDIPSVEYLL-------------QNGS-DPNVKDHAGWTPLHEACNHGH 55
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
+V LL+ A V+ +PL AA++GH +V++ L Y A+ N
Sbjct: 56 LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASRN 103
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
+ G T L +A+ +G E LL+N +D + D +G TPL A + GH V LLL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
A V+T + + L AA G++D+V LL G
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
T+ G T L AS G V+ LLQ+G+D N D G T L A GHL+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK-------- 57
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADIN 513
VV+LLL A VN + + L +A GH DIV +L Y A N
Sbjct: 58 -VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%)
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
L + S G V LL+ G+ + +D G TPL A GH V E+LL+++A +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
+PL AA GH V LLL +GA + ++ G
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
+ +++LH + +I ++ L++ D + D G T L+ A + G + V++LL+
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGS--DPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
A +N T + +PL A+ GH +VKLLL GA N ++ G
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
G T L ++ G V +L+ +D N +D+ G T L + + G+ KVV +LL+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC-----NHGHLKVVELLLQ 64
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
A V+ + +PL AA GH D+ ++LL A ++ ++ G P+
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD--DSEY 944
+ IA+ +G V LL G+DP DH G A GH V+ LL Q+ ++
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 945 FVHYYYYYNSAKSGHETVLRLLKQYA 970
+ + +++AK+GH +++LL Y
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYG 99
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
G T L A+ G V LL G+ + D G T L A G++ VV LL ++
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 650 GCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
G Q S PLH AA GH ++ + LL GA + V+ G P+
Sbjct: 70 NTT--GYQNDS------------PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 16/222 (7%)
Query: 412 WTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
W+P+ A+ GH ++ L+ G VN + L A GGHL VK+
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS---------CVKI 110
Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
LL GA VN ++ T L + G D V+ +L++ A + Q ++D + + +A
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEAA---- 165
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
G+ + V+ L+ G +DH+ TPL +A R + LLE+ AD + K
Sbjct: 166 -RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQD 223
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
+PL A LL+ +GA +AEG+ + + +
Sbjct: 224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 265
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
+P+ AA GH+ L+ + I +PL A GH SCV +LL GA V+
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+ A+ T L A G+ D VN LL Q G+ + D +P+H AA
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLL-------------QHGASVQPESDLA--SPIHEAA 165
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
GH E +L+ G +D + PL LA ++ V+ LE A+VNQ
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG-ADVNQ 218
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 20/214 (9%)
Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
TA VS L G+ V ILL+ GA+V+ + TPL A G D +LL++
Sbjct: 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148
Query: 581 AD-QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
A Q D + +P+ AA GH CV L+ +G +D + T L +A V
Sbjct: 149 ASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206
Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
+LL+ G + Q D +PLH EE+ L++ GA
Sbjct: 207 KKLLESGADV------NQGKGQD---------SPLHAVVRTASEELACLLMDFGADTQAK 251
Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
+ +G+ P+ L + L ++FLE+ A++ +
Sbjct: 252 NAEGKRPVELVPPE--SPLAQLFLEREGASLPKP 283
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 19/202 (9%)
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
L+ +G V+ + ++PL A GH +ILL++ A + + TPL+ A G
Sbjct: 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137
Query: 603 ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
CV LLL GA V +++ + + AA +G+++ VN L+ G G++D
Sbjct: 138 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYG------------GNID 184
Query: 663 EQHRDNCGWTPLHYAAIEGHEEVC-RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
H+ + TPL Y A E + C + LLE+GA V+Q +PL + L +
Sbjct: 185 --HKISHLGTPL-YLACENQQRACVKKLLESGADVNQGKGQ-DSPLHAVVRTASEELACL 240
Query: 722 FLEQYEANVNQKSHDGRTALRV 743
++ + A+ K+ +G+ + +
Sbjct: 241 LMD-FGADTQAKNAEGKRPVEL 261
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
+ ++ AA G +++ L+ G +N + +PL A GGH + VK+LL+ GA VN
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN- 119
Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
G T A W L V G V LLL GA V +S+ + + +A GH
Sbjct: 120 ----GVT----ADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHV 170
Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT 559
+ V+S++ Y +I+ + + T L ++ + V LLE GA V+ + + +
Sbjct: 171 ECVNSLIAYGGNIDHKISHLGTPLYLAC-----ENQQRACVKKLLESGADVN-QGKGQDS 224
Query: 560 PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
PL ++ +L++ AD + G+ P+
Sbjct: 225 PLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 26/206 (12%)
Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
+ L+ A G + V+ILL+ GA +N + TPL +A G V LLLQ GA V
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 440 -SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
SD+ + + AA GH+E V L+A G +++ S T L +
Sbjct: 154 ESDLA--SPIHEAARRGHVE---------CVNSLIAYGGNIDHKISHLGTPLYLACENQQ 202
Query: 499 ADIVSSILEYDADINQ---QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR 555
V +LE AD+NQ QD+ + ++ ++ +L++ GA ++
Sbjct: 203 RACVKKLLESGADVNQGKGQDSPLHAVVRTAS---------EELACLLMDFGADTQAKNA 253
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEA 581
EG P+ + E + ++ LE E
Sbjct: 254 EGKRPVELVPPE--SPLAQLFLEREG 277
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
W+P+H AAI GH+ R L+ G V+ + D +PL A GH V++ L ++ A V
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL-KHGAQV 118
Query: 731 NQKSHDGRTAL 741
N + D T L
Sbjct: 119 NGVTADWHTPL 129
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHS-DHCGRNAFRVAAKSGHETVLRLLKQYA 939
S + I AA+ GH +CV L+ YG + H H G + V +LL+ A
Sbjct: 155 SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214
Query: 940 DDSEYFVHYYYYYNSAKSGHETVLRLLKQYADD 972
D ++ + ++ E + LL + D
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDFGAD 247
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
INHTD EG+TPL A+ G AVV+ LLQ+GAD G +AL A G+ +
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD----- 99
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
+VK+LL G VN D G T L+ + + H V +LE AD + + G ++
Sbjct: 100 ----IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 155
Query: 524 SVS 526
++
Sbjct: 156 DLA 158
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G +LSV L ++ G ++ +E+ ++H D EG TPL+ AA G V E LL+
Sbjct: 17 GANSLSVHQL---AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 73
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
N AD + K + L A S G+ V +LL G V+ D G T L A ++
Sbjct: 74 NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 133
Query: 639 VNQLLDRG 646
V LL+ G
Sbjct: 134 VKMLLESG 141
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D +L+ K ++AL++A +G+ D V++LL+ G ++N D G TPL A G H VK+
Sbjct: 77 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 136
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
LL+SGAD G ++ A G+ V V+
Sbjct: 137 LLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
+N D EG T L+ +A G +V +L+ AD Q GR SAL + S GY
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRE----SALSLACSKGYTD 99
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
+V +LL+ G V+ D G TPLL A H ++LLE+ AD SG + A
Sbjct: 100 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Query: 599 SMGHAS 604
++G+ S
Sbjct: 160 ALGYRS 165
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
+E E +H D+ G TPL AA+ G + V LL GA + + LS+A ++G
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
D+V LLD G +D D G TPL YA H + + LLE+GA
Sbjct: 99 DIVKMLLDCG--------------VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 144
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
+ G + LA G Y V+ +E +
Sbjct: 145 TIETDSGYNSMDLAVALG-YRSVQQVIESH 173
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A G +++ +E + IN D +G T L +A + G VV LL+ GA
Sbjct: 27 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA-----AHGQIAVVEFLLQNGADPQLL 81
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
+ + L +A +G+ D+ ++LL+ D + D +G TPL A H CV +LL G
Sbjct: 82 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 141
Query: 614 AYVDTIDAEGRTVLSVAAAQG 634
A G + +A A G
Sbjct: 142 ADPTIETDSGYNSMDLAVALG 162
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
G + A H CV++LL GADP G N+ +A G+ +V ++++ +
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 173
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN 403
+S L C++ +++K L +D+ D +G T L A H V V++LLE+GA+
Sbjct: 86 ESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLL 430
G+ + A G+ +V +++
Sbjct: 144 PTIETDSGYNSMDLAVALGYRSVQQVI 170
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
K G T L+ AA G + V+ LL GA++N +G TPL A+ GH+ +VKLLL GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 436 DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA 481
DVN G T A GH E +VKLL A GA VNA
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHE---------IVKLLDAKGADVNA 103
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
+G T L +A GHA+ V +L AD+N + DG T L ++A +G+A++V +LL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA-----KNGHAEIVKLLL 62
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
KGA V+ ++G TP +A GH ++ ++L AD
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G TPLH AA GH E + LL GA V+ DG PL LAA++GH +V++ L + A+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-AD 67
Query: 730 VNQKSHDGRTALRVNMKN 747
VN +S DG T + KN
Sbjct: 68 VNARSKDGNTPEHLAKKN 85
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 21/124 (16%)
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
WG+ +G T L AA G+ + V +LL +G D R G
Sbjct: 3 MWGSK------DGNTPLHNAAKNGHAEEVKKLLSKGA--------------DVNARSKDG 42
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
TPLH AA GH E+ + LL GA V+ DG P LA ++GH+ +V++ L+ A+V
Sbjct: 43 NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL-LDAKGADV 101
Query: 731 NQKS 734
N +S
Sbjct: 102 NARS 105
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
DG T L +A +G+A+ V LL KGA V+ ++G TPL +AA GH ++ ++LL
Sbjct: 8 DGNTPLHNAA-----KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
AD + K G TP A GH V LL GA V+
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
++G TPL AA GH + + LL AD + K G TPL AA GHA V LLL GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
V+ +G T +A G+ ++V +LLD
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIV-KLLD 95
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 338 MFDSKNQSV-LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQI 396
M+ SK+ + LH + +K L + D+ K G T L++AA G + V++
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 397 LLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG 443
LL GA++N +G TP A GH +VKLL GADVN G
Sbjct: 61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
G T L AA GH E VK LL+ GA VNA +G T L +A GHA+IV
Sbjct: 9 GNTPLHNAAKNGHAEE---------VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVD 551
+L AD+N + DG T ++ +G+ ++V +L KGA V+
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLA-----KKNGHHEIVKLLDAKGADVN 102
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 877 ILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR-LL 935
+ GS + AA+ GH + V+ LL GAD G +AAK+GH +++ LL
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 936 KQYAD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVVS 977
+ AD ++ + + K+GH +++LL D+ S
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
INHTD EG+TPL A+ G AVV+ LLQ+GAD G +AL A G+ +
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD----- 81
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
+VK+LL G VN D G T L+ + + H V +LE AD + + G ++
Sbjct: 82 ----IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 137
Query: 524 SVS 526
++
Sbjct: 138 DLA 140
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
+N D EG T L+ +A G +V +L+ AD Q GR SAL + S GY
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRE----SALSLACSKGYTD 81
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
+V +LL+ G V+ D G TPLL A H ++LLE+ AD SG + A
Sbjct: 82 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Query: 599 SMGHAS 604
++G+ S
Sbjct: 142 ALGYRS 147
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D +L+ K ++AL++A +G+ D V++LL+ G ++N D G TPL A G H VK+
Sbjct: 59 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 118
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
LL+SGAD G ++ A G+ V V+
Sbjct: 119 LLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%)
Query: 544 LEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA 603
+E+ ++H D EG TPL+ AA G V E LL+N AD + K + L A S G+
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
V +LL G V+ D G T L A ++ V LL+ G
Sbjct: 81 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 123
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
+E E +H D+ G TPL AA+ G + V LL GA + + LS+A ++G
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
D+V LLD G +D D G TPL YA H + + LLE+GA
Sbjct: 81 DIVKMLLDCG--------------VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 126
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
+ G + LA G Y V+ +E +
Sbjct: 127 TIETDSGYNSMDLAVALG-YRSVQQVIESH 155
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A G +++ +E + IN D +G T L +A + G VV LL+ GA
Sbjct: 9 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA-----AHGQIAVVEFLLQNGADPQLL 63
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
+ + L +A +G+ D+ ++LL+ D + D +G TPL A H CV +LL G
Sbjct: 64 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 123
Query: 614 AYVDTIDAEGRTVLSVAAAQG 634
A G + +A A G
Sbjct: 124 ADPTIETDSGYNSMDLAVALG 144
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
+N +D G T L AA H G + VV+ LL GA +AL +
Sbjct: 27 INHTDEEGFTPLMWAA--AH-------GQIAVVEFLLQNGADPQLLGKGRESALSLACSK 77
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
G+ DIV +L+ D+N+ D +G T L + + K V +LLE GA E
Sbjct: 78 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV-----HGNHVKCVKMLLESGADPTIETDS 132
Query: 557 GMTPLLVAAFEGHRDVCEIL 576
G + +A G+R V +++
Sbjct: 133 GYNSMDLAVALGYRSVQQVI 152
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
G + A H CV++LL GADP G N+ +A G+ +V ++++ +
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 155
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
+ +S L C++ +++K L +D+ D +G T L A H V V++L
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKML 119
Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
LE+GA+ G+ + A G+ +V +++
Sbjct: 120 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++ N TD G T L A+ S K LL++ AD N D GRT L AA
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA-------- 65
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+ V ++L+ A ++A +G T LI +A + ++ ++ AD+N D+
Sbjct: 66 -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G++AL +A +LL+ GA D ++ TPL +AA EG + ++LL+
Sbjct: 125 GKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ A++D D R P A H V LL
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 4/181 (2%)
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
P + + + N D G TAL +A +D +LE AD N QDN GRT L
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62
Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
+ S+D ++ + +D +G TPL++AA + E L+ + AD
Sbjct: 63 HAAV----SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
+ +D G++ L AA++ + +LL GA D + T L +AA +G+ + LL
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
Query: 644 D 644
D
Sbjct: 179 D 179
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 20/192 (10%)
Query: 539 VVSILLEKGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
V+S + +GA + ++ DR G T L +AA D + LLE AD + D GRTPL AA
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 598 ASMGHASCVALLLFWGAYVDTIDA---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG 654
S A V +L D +DA +G T L +AA +L GM+ +
Sbjct: 66 VS-ADAQGVFQILIRNRATD-LDARMHDGTTPLILAA---------RLAVEGMLEDLINS 114
Query: 655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG 714
++D+ G + LH+AA + + LL+ GA D +N PL LAA++G
Sbjct: 115 HADVNAVDD-----LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
Query: 715 HYHLVEMFLEQY 726
Y ++ L+ +
Sbjct: 170 SYETAKVLLDHF 181
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
NQ D G TAL ++A S LLE A + +D G TPL A + V
Sbjct: 19 NQTDRTGETALHLAARYSRSD-----AAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 573 CEILLENEA-DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA 631
+IL+ N A D D G TPL AA + + L+ A V+ +D G++ L AA
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 632 AQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691
A N+D LL G ++ ++N TPL AA EG E + LL+
Sbjct: 134 AVNNVDAAVVLLKNGA--------------NKDMQNNREETPLFLAAREGSYETAKVLLD 179
Query: 692 AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
A D D+ R P +A + H+ +V + L++Y
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRL-LDEY 213
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716
Q SL Q D G T LH AA + + LLEA A + DN GR PL A
Sbjct: 13 QGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 71
Query: 717 HLVEMFLEQYEANVNQKSHDGRTAL 741
+ ++ + +++ + HDG T L
Sbjct: 72 GVFQILIRNRATDLDARMHDGTTPL 96
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+AA+EG + ++LL + A+ +DH R +A + H ++RLL +Y
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
INHTD EG+TPL A+ G AVV+ LLQ+GAD G +AL A G+ +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD----- 83
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
+VK+LL G VN D G T L+ + + H V +LE AD + + G ++
Sbjct: 84 ----IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139
Query: 524 SVS 526
++
Sbjct: 140 DLA 142
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G +LSV L ++ G ++ +E+ ++H D EG TPL+ AA G V E LL+
Sbjct: 1 GANSLSVHQL---AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
N AD + K + L A S G+ V +LL G V+ D G T L A ++
Sbjct: 58 NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117
Query: 639 VNQLLDRG 646
V LL+ G
Sbjct: 118 VKMLLESG 125
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
+N D EG T L+ +A G +V +L+ AD Q GR SAL + S GY
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRE----SALSLACSKGYTD 83
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
+V +LL+ G V+ D G TPLL A H ++LLE+ AD SG + A
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Query: 599 SMGHAS 604
++G+ S
Sbjct: 144 ALGYRS 149
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D +L+ K ++AL++A +G+ D V++LL+ G ++N D G TPL A G H VK+
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
LL+SGAD G ++ A G+ V V+
Sbjct: 121 LLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
+E E +H D+ G TPL AA+ G + V LL GA + + LS+A ++G
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
D+V LLD G +D D G TPL YA H + + LLE+GA
Sbjct: 83 DIVKMLLDCG--------------VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
+ G + LA G Y V+ +E +
Sbjct: 129 TIETDSGYNSMDLAVALG-YRSVQQVIESH 157
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A G +++ +E + IN D +G T L +A + G VV LL+ GA
Sbjct: 11 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA-----AHGQIAVVEFLLQNGADPQLL 65
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
+ + L +A +G+ D+ ++LL+ D + D +G TPL A H CV +LL G
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 614 AYVDTIDAEGRTVLSVAAAQG 634
A G + +A A G
Sbjct: 126 ADPTIETDSGYNSMDLAVALG 146
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
G + A H CV++LL GADP G N+ +A G+ +V ++++ +
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
+ +S L C++ +++K L +D+ D +G T L A H V V++L
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
LE+GA+ G+ + A G+ +V +++
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++ N TD G T L A+ S K LL++ AD D GRT L AA
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA-------- 62
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+ V ++LL A ++A +G T LI +A + ++ ++ AD+N D+
Sbjct: 63 -VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G++AL +A +LL+ GA D ++ + TPL +AA EG + ++LL+
Sbjct: 122 GKSALHWAAAVNNVD-----AAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLD 176
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ A++D D R P A H V LL
Sbjct: 177 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 539 VVSILLEKGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
V+S + +GA + ++ DR G T L +AA D + LLE AD D GRTPL AA
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 598 ASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR 656
S +LL A +D +G T L +AA +L GM+ +
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHDGTTPLILAA---------RLALEGMLEDLINSHA 113
Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716
++D+ G + LH+AA + + LL+ GA D +N PL LAA++G Y
Sbjct: 114 DVNAVDD-----LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSY 168
Query: 717 HLVEMFLEQYEANVNQKSHDGR 738
++ L+ + AN + H R
Sbjct: 169 ETAKVLLDHF-ANRDITDHMDR 189
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 5/179 (2%)
Query: 467 CVVKLLLAAGAHV-NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
V+ + GA + N D G TAL +A +D +LE AD QDN GRT L
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
+ S+D +L + +D +G TPL++AA + E L+ + AD +
Sbjct: 62 AV----SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA 117
Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
+D G++ L AA++ + +LL GA D + + T L +AA +G+ + LLD
Sbjct: 118 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLD 176
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
NQ D G TAL ++A S LLE A +D G TPL A + V
Sbjct: 16 NQTDRTGETALHLAARYSRSD-----AAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 573 CEILLENEA-DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA 631
+ILL N A D D G TPL AA + + L+ A V+ +D G++ L AA
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAA 130
Query: 632 AQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691
A N+D LL G ++ ++N TPL AA EG E + LL+
Sbjct: 131 AVNNVDAAVVLLKNGA--------------NKDMQNNKEETPLFLAAREGSYETAKVLLD 176
Query: 692 AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
A D D+ R P +A + H+ +V + L++Y
Sbjct: 177 HFANRDITDHMDRLPRDIAQERMHHDIVRL-LDEY 210
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716
Q SL Q D G T LH AA + + LLEA A DN GR PL A
Sbjct: 10 QGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQ 68
Query: 717 HLVEMFLEQYEANVNQKSHDGRTAL 741
+ ++ L +++ + HDG T L
Sbjct: 69 GVFQILLRNRATDLDARMHDGTTPL 93
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+AA+EG + ++LL + A+ +DH R +A + H ++RLL +Y
Sbjct: 161 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 210
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++ N TD G T L A+ S K LL++ AD N D GRT L AA
Sbjct: 47 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA-------- 98
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+ V ++L+ A ++A +G T LI +A + ++ ++ AD+N D+
Sbjct: 99 -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 157
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G++AL +A +LL+ GA D ++ TPL +AA EG + ++LL+
Sbjct: 158 GKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ A++D D R P A H V LL
Sbjct: 213 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 243
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 9/216 (4%)
Query: 434 GADVNCSDMGGRTALR-AAAWGGHLEVTIVL----GPLCVVKLLLAAGAHVNAADSEGRT 488
G DVN G T L A+ GG LE P + + + N D G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
AL +A +D +LE AD N QDN GRT L + S+D ++ +
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV----SADAQGVFQILIRNRAT 116
Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
+D +G TPL++AA + E L+ + AD + +D G++ L AA++ + +
Sbjct: 117 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 176
Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
LL GA D + T L +AA +G+ + LLD
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 511 DINQQDNDGRTALSVSALC--------VPSSDGYAKVVSILLEKGAKV-DHEDREGMTPL 561
D+N + DG T L +++ + V+S + +GA + + DR G T L
Sbjct: 3 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 62
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
+AA D + LLE AD + D GRTPL AA S A V +L D +DA
Sbjct: 63 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD-LDA 120
Query: 622 ---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+G T L +AA +L GM+ + ++D+ G + LH+AA
Sbjct: 121 RMHDGTTPLILAA---------RLAVEGMLEDLINSHADVNAVDD-----LGKSALHWAA 166
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
+ + LL+ GA D +N PL LAA++G Y ++ L+ +
Sbjct: 167 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 214
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 113/266 (42%), Gaps = 35/266 (13%)
Query: 476 GAHVNAADSEGRTAL-IASAYMGHADIVSSILEYDADI-------------NQQDNDGRT 521
G VN +G T L IAS G + +S E DA NQ D G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 522 ALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581
AL ++A S LLE A + +D G TPL A + V +IL+ N A
Sbjct: 61 ALHLAARYSRSD-----AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 582 -DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVN 640
D D G TPL AA + + L+ A V+ +D G++ L AAA N+D
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 175
Query: 641 QLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD 700
LL G ++ ++N TPL AA EG E + LL+ A D D
Sbjct: 176 VLLKNGA--------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
Query: 701 NDGRAPLILAAQDGHYHLVEMFLEQY 726
+ R P +A + H+ +V + L++Y
Sbjct: 222 HMDRLPRDIAQERMHHDIVRL-LDEY 246
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 647 MILGCLAGGRQTGSLDEQ-------------------HRDNCGWTPLHYAAIEGHEEVCR 687
MI C GG +TG+ +E+ D G T LH AA + +
Sbjct: 16 MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 75
Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
LLEA A + DN GR PL A + ++ + +++ + HDG T L
Sbjct: 76 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 129
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+AA+EG + ++LL + A+ +DH R +A + H ++RLL +Y
Sbjct: 197 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 246
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++ N TD G T L A+ S K LL++ AD N D GRT L AA
Sbjct: 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA-------- 97
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+ V ++L+ A ++A +G T LI +A + ++ ++ AD+N D+
Sbjct: 98 -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G++AL +A +LL+ GA D ++ TPL +AA EG + ++LL+
Sbjct: 157 GKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ A++D D R P A H V LL
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 95/214 (44%), Gaps = 9/214 (4%)
Query: 436 DVNCSDMGGRTALR-AAAWGGHLEVTIVL----GPLCVVKLLLAAGAHVNAADSEGRTAL 490
DVN G T L A+ GG LE P + + + N D G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
+A +D +LE AD N QDN GRT L + S+D ++ + +
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV----SADAQGVFQILIRNRATDL 117
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
D +G TPL++AA + E L+ + AD + +D G++ L AA++ + +LL
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
GA D + T L +AA +G+ + LLD
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 511 DINQQDNDGRTALSVSALC--------VPSSDGYAKVVSILLEKGAKV-DHEDREGMTPL 561
D+N + DG T L +++ + V+S + +GA + + DR G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
+AA D + LLE AD + D GRTPL AA S A V +L D +DA
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD-LDA 119
Query: 622 ---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+G T L +AA +L GM+ + ++D+ G + LH+AA
Sbjct: 120 RMHDGTTPLILAA---------RLAVEGMLEDLINSHADVNAVDD-----LGKSALHWAA 165
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
+ + LL+ GA D +N PL LAA++G Y ++ L+ +
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 112/265 (42%), Gaps = 31/265 (11%)
Query: 462 VLGPLCVVKLLLAA--GAHVNAADSEGRTALIASAYMGHADIVSSILEYDADI-NQQDND 518
V GP L++A+ G + +SE A ++S + A + NQ D
Sbjct: 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPA--------VISDFIYQGASLHNQTDRT 56
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G TAL ++A S LLE A + +D G TPL A + V +IL+
Sbjct: 57 GETALHLAARYSRSD-----AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 579 NEA-DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID 637
N A D D G TPL AA + + L+ A V+ +D G++ L AAA N+D
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171
Query: 638 VVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD 697
LL G ++ ++N TPL AA EG E + LL+ A D
Sbjct: 172 AAVVLLKNGA--------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217
Query: 698 QVDNDGRAPLILAAQDGHYHLVEMF 722
D+ R P +A + H+ +V +
Sbjct: 218 ITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 647 MILGCLAGGRQTGSLDEQ-------------------HRDNCGWTPLHYAAIEGHEEVCR 687
MI C GG +TG+ +E+ D G T LH AA + +
Sbjct: 15 MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74
Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
LLEA A + DN GR PL A + ++ + +++ + HDG T L
Sbjct: 75 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++ N TD G T L A+ S K LL++ AD N D GRT L AA
Sbjct: 46 GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA-------- 97
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+ V ++L+ A ++A +G T LI +A + ++ ++ AD+N D+
Sbjct: 98 -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G++AL +A +LL+ GA D ++ TPL +AA EG + ++LL+
Sbjct: 157 GKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ A++D D R P A H V LL
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 95/214 (44%), Gaps = 9/214 (4%)
Query: 436 DVNCSDMGGRTALR-AAAWGGHLEVTIVL----GPLCVVKLLLAAGAHVNAADSEGRTAL 490
DVN G T L A+ GG LE P + + + N D G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
+A +D +LE AD N QDN GRT L + S+D ++ + +
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV----SADAQGVFQILIRNRATDL 117
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
D +G TPL++AA + E L+ + AD + +D G++ L AA++ + +LL
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
GA D + T L +AA +G+ + LLD
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 511 DINQQDNDGRTALSVSALC--------VPSSDGYAKVVSILLEKGAKV-DHEDREGMTPL 561
D+N + DG T L +++ + V+S + +GA + + DR G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
+AA D + LLE AD + D GRTPL AA S A V +L D +DA
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD-LDA 119
Query: 622 ---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+G T L +AA +L GM+ + ++D+ G + LH+AA
Sbjct: 120 RMHDGTTPLILAA---------RLAVEGMLEDLINSHADVNAVDD-----LGKSALHWAA 165
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
+ + LL+ GA D +N PL LAA++G Y ++ L+ +
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 94/211 (44%), Gaps = 20/211 (9%)
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
NQ D G TAL ++A SD + LLE A + +D G TPL A + V
Sbjct: 51 NQTDRTGATALHLAA-AYSRSDAAKR----LLEASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 573 CEILLENEA-DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA 631
+IL+ N A D D G TPL AA + + L+ A V+ +D G++ L AA
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165
Query: 632 AQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691
A N+D LL G ++ ++N TPL AA EG E + LL+
Sbjct: 166 AVNNVDAAVVLLKNGA--------------NKDMQNNREETPLFLAAREGSYETAKVLLD 211
Query: 692 AGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
A D D+ R P +A + H+ +V +
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 647 MILGCLAGGRQTGSLDEQ-------------------HRDNCGWTPLHYAAIEGHEEVCR 687
MI C GG +TG+ +E+ D G T LH AA + +
Sbjct: 15 MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAK 74
Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
LLEA A + DN GR PL A + ++ + +++ + HDG T L
Sbjct: 75 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
VD G T LN+A H ++ + L++ GA+IN + +P A G + ++ +L+
Sbjct: 35 VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 434 GA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRTALI 491
D+N + G AL AA GH++ VKLLL G ++ + G TALI
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHID---------NVKLLLEDGREDIDFQNDFGYTALI 145
Query: 492 ASAYMG-----HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
+ + + DIV ++E AD + +DN GRTA+ + + GY ++ IL +
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA-----NQKGYTEISKILAQ 199
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 10/200 (5%)
Query: 381 ALNVAAHQGFVDAV-QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
AL AA+Q V +IL + ++ D EG TPL A + K L+ GAD+N
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
+ + A G E+ + +L A +N + G ALI +A GH
Sbjct: 68 QNSISDSPYLYAGAQGRTEI--------LAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119
Query: 500 DIVSSILEYD-ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGM 558
D V +LE DI+ Q++ G TAL + + Y +V +L+E GA +D G
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGR 179
Query: 559 TPLLVAAFEGHRDVCEILLE 578
T + A +G+ ++ +IL +
Sbjct: 180 TAMDYANQKGYTEISKILAQ 199
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
KV IL + +VD D EG TPL +A ++ + L++ AD + + +P A
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 598 ASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR 656
+ G +A +L ++ + G L AA +G+ID V LL+ GR
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE---------DGR 130
Query: 657 QTGSLDEQHRDNCGWTPLHYAA--IEG---HEEVCRALLEAGAKVDQVDNDGRAPLILAA 711
+ D +++ G+T L A EG ++++ + L+E GA DN GR + A
Sbjct: 131 E----DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186
Query: 712 QDGHYHLVEMFLEQY 726
Q G Y + L QY
Sbjct: 187 QKG-YTEISKILAQY 200
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSV 629
+ V EIL + D +D G TPL A L+ GA ++ ++ +
Sbjct: 19 KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY 78
Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
A AQG +++ +L T L++ +R G L AA +GH + + L
Sbjct: 79 AGAQGRTEILAYMLKHA-----------TPDLNKHNR--YGGNALIPAAEKGHIDNVKLL 125
Query: 690 LEAGAKVDQVDND-GRAPLILAA--QDGH--YHLVEMFLEQYEANVNQKSHDGRTALR-V 743
LE G + ND G LI A ++G+ Y + L + A+ + K + GRTA+
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Query: 744 NMKNVTKLS 752
N K T++S
Sbjct: 186 NQKGYTEIS 194
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 842 LIHAV-DLSQRRQTSSSSAVPSATDEHFS----------RDTHMRIILGSSKVGEKISI- 889
L HA DL++ + ++ +P+A H D + G + + E + +
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+ ++D V+LL+ GAD D+ GR A A + G+ + ++L QY
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA TD G +PL A+ GH + ++LL++G +
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
RT L AA GH + V++LL GA VNA D TAL + H ++V
Sbjct: 68 RTPLHMAASEGHANI---------VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+++Y AD++ Q +TA +S
Sbjct: 119 LIKYGADVHTQSKFCKTAFDIS 140
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G + L++AA G ++LL AG + + TPL A+ GH+ +V++LL+ GADV
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N DM TAL A H E VV+LL+ GA V+ +TA S G
Sbjct: 94 NAKDMLKMTALHWATEHNHQE---------VVELLIKYGADVHTQSKFCKTAFDISIDNG 144
Query: 498 HADI 501
+ D+
Sbjct: 145 NEDL 148
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%)
Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
L S L + + G+ +LL G D + TPL +AA EGH ++ E+LL++ AD
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 583 QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
+ D T L A H V LL+ +GA V T +T ++ GN D+ L
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
V IL+ GA D G +PL +AA GH E+LL +D K RTPL AAS
Sbjct: 18 VRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS 76
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
GHA+ V +LL GA V+ D T L A + +VV L+ G
Sbjct: 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N A D G +PL AA GH S +LL G D
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
RT L +AA++G+ ++V LL G D +D T LH+A
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGA--------------DVNAKDMLKMTALHWATEH 110
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
H+EV L++ GA V + ++ +G+ L E+
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+A GA D G + L +A GH +L A +++ D RT + + L
Sbjct: 18 VRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLR--AGVSR---DARTKVDRTPL 71
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
+ +S+G+A +V +LL+ GA V+ +D MT L A H++V E+L++ AD
Sbjct: 72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G V +L+ GA T D G + L +AA G+ LL G
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAG------- 57
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
+ R TPLH AA EGH + LL+ GA V+ D L A +
Sbjct: 58 -------VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
H +VE+ + +Y A+V+ +S +TA +++ N
Sbjct: 111 NHQEVVELLI-KYGADVHTQSKFCKTAFDISIDN 143
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ--YAD 940
+G+K+ AA+ G +D VR+L+ GA P +D G + +AA+ GH + +L + +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 941 DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D+ V + +A GH ++ +L ++ D+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
+ +AA EGH + V +LL +GAD D A A + H+ V+ LL +Y D
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 878 LGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR-LLK 936
LG+S + +AAQ GH +LL G R +AA GH ++ LLK
Sbjct: 33 LGTSP----LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 937 QYAD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
AD +++ + + + + H+ V+ LL +Y D+
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936
A + H++ V LL+ YGAD + AF ++ +G+E + +L+
Sbjct: 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L +AA+ G + LL V+ + GRT L V GN ++ +LL RG
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
+ +D G+ +H AA G + + LLE A V+ DN+G PL LAA++
Sbjct: 62 --------NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
GH +VE ++ +NV ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
GRTAL+ + LG + + LL GA+ + D G + +A G D +
Sbjct: 38 GRTALQ----------VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQ 87
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA-KVDHEDREGMTPLL 562
++LE+ AD+N +DN+G L ++A +G+ +VV L++ A V H + +G T
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAA-----KEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 563 VAAFEGHRDVCEILLENEA 581
+A G +V ++ N A
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L ++A G + ++S+L+ + ++N Q+ GRTAL V L G ++ LL +GA
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL------GNPEIARRLLLRGAN 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
D +DR G + AA G D + LLE +AD + D G PL AA GH V L
Sbjct: 63 PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 610 L-FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ + V + +G T +A G +VV+ + G
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509
A WG L G L + LL +VNA + GRTAL +G+ +I +L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
A+ + +D G + +A G + LLE A V+ ED EG PL +AA EGH
Sbjct: 61 ANPDLKDRTGFAVIHDAA-----RAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 570 RDVCEILLENEADQ-DHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
V E L+++ A H + G T A G V+L+ GA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
+L D+ G ++ AA G +D +Q LLE A++N D EG PL A+ GH VV+ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 432 Q-SGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
+ + ++V + G TA A G EV ++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
L AA +G ++ + LL+ N+N + G T L+ G +LLL+ GA+ + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
G + AA G L+ ++ LL A VN D+EG L +A GH +
Sbjct: 68 RTGFAVIHDAARAGQLD---------TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 502 VSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
V ++++ A ++ +++ G TA ++ L G +VVS++ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLY-----GRNEVVSLMQANGA 161
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G+TAL V G + + LL GAN + D G+ + A+ G ++ LL+ ADV
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N D G L AA GHL V V L+ ++V + +G TA + G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRV--------VEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 498 HADIVS 503
++VS
Sbjct: 149 RNEVVS 154
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
AA+ G D ++ LL + AD D+ G +AAK GH V+ L ++
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
VN D G T LI ++ G + V +LE+ AD + + +ALS++ S+ GY
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA-----STGGYTD 83
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
+V +LLE+ ++ D G TPLL A H E LL AD SG TP+ A
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 599 SMGH 602
++G+
Sbjct: 144 ALGY 147
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
+H+L A+ ++ LK L+ + L + D+ G T L A+ G ++ V+ LLE GA+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
E + L AS GG++ +V LLL+ D+N D G T L A G H++
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVK-------- 116
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
C V+ LLA GA + G T + + +G+ + I
Sbjct: 117 C-VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
D+ G TPL A++ G V LL WGA + E + LS+A+ G D+V LL+R
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER- 91
Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
+D D G TPL YA H + ALL GA + + G P
Sbjct: 92 -------------DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 707 LILAAQDGHYHLVEMFLEQY 726
+ LA G Y V+ +E +
Sbjct: 139 MDLAVALG-YRKVQQVIENH 157
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
VN D G T L A+ G +E V+ LL GA + E +AL ++
Sbjct: 29 VNKPDERGFTPLIWASAFGEIET---------VRFLLEWGADPHILAKERESALSLASTG 79
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
G+ DIV +LE D DIN D +G T L + + K V LL +GA + E
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAV-----HGNHVKCVEALLARGADLTTEADS 134
Query: 557 GMTPLLVAAFEGHRDVCEIL 576
G TP+ +A G+R V +++
Sbjct: 135 GYTPMDLAVALGYRKVQQVI 154
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
+N+ D G T L + S+ G + V LLE GA +E + L +A+ G+ D
Sbjct: 29 VNKPDERGFTPLIWA-----SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD 83
Query: 572 VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA 631
+ +LLE + D + D +G TPL A H CV LL GA + T G T + +A
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 632 AQG 634
A G
Sbjct: 144 ALG 146
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
AAQG +D + + L +G L D G+TPL +A+ G E R LL
Sbjct: 10 AAQGELDQLKEHLRKGDNL-------------VNKPDERGFTPLIWASAFGEIETVRFLL 56
Query: 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
E GA + + + L LA+ G+ +V + LE+ + ++N +G T L
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L +AA+ G + LL V+ + GRT L V GN ++ +LL RG
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
+ +D G+ +H AA G + + LLE A V+ DN+G PL LAA++
Sbjct: 62 --------NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
GH +VE ++ +NV ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L ++A G + ++S+L+ + ++N Q+ GRTAL V L G ++ LL +GA
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL------GNPEIARRLLLRGAN 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
D +DR G + AA G D + LLEN+AD + D G PL AA GH V L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 610 L-FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ + V + +G T +A G +VV+ + G
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509
A WG L G L + LL +VNA + GRTAL +G+ +I +L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
A+ + +D G + +A G+ + LLE A V+ ED EG PL +AA EGH
Sbjct: 61 ANPDLKDRTGFAVIHDAA-----RAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
Query: 570 RDVCEILLENEADQ-DHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
V E L+++ A H + G T A G V+L+ GA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
GRTAL+ + LG + + LL GA+ + D G + +A G D +
Sbjct: 38 GRTALQ----------VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQ 87
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA-KVDHEDREGMTPLL 562
++LE AD+N +DN+G L ++A +G+ +VV L++ A V H + +G T
Sbjct: 88 TLLENQADVNIEDNEGNLPLHLAA-----KEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 563 VAAFEGHRDVCEILLENEA 581
+A G +V ++ N A
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
+L D+ G ++ AA GF+D +Q LLE A++N D EG PL A+ GH VV+ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 432 Q-SGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
+ + ++V + G TA A G EV ++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G+TAL V G + + LL GAN + D G+ + A+ G ++ LL++ ADV
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N D G L AA GHL V V L+ ++V + +G TA + G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRV--------VEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 498 HADIVS 503
++VS
Sbjct: 149 RNEVVS 154
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
L AA +G ++ + LL+ N+N + G T L+ G +LLL+ GA+ + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
G + AA G L+ ++ LL A VN D+EG L +A GH +
Sbjct: 68 RTGFAVIHDAARAGFLD---------TLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 502 VSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
V ++++ A ++ +++ G TA ++ L G +VVS++ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLY-----GRNEVVSLMQANGA 161
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
VN D G T LI ++ G + V +LE+ AD + + +ALS++ S+ GY
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA-----STGGYTD 83
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
+V +LLE+ ++ D G TPLL A H E LL AD SG TP+ A
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 599 SMGH 602
++G+
Sbjct: 144 ALGY 147
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
+H+L A+ ++ LK L+ + L + D+ G T L A+ G ++ V+ LLE GA+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
E + L AS GG++ +V LLL+ D+N D G T L A G H++
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK-------- 116
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
C V+ LLA GA + G T + + +G+ + I
Sbjct: 117 C-VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
D+ G TPL A++ G V LL WGA + E + LS+A+ G D+V LL+R
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER- 91
Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
+D D G TPL YA H + ALL GA + + G P
Sbjct: 92 -------------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 707 LILAAQDGHYHLVEMFLEQY 726
+ LA G Y V+ +E +
Sbjct: 139 MDLAVALG-YRKVQQVIENH 157
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 48/192 (25%)
Query: 386 AHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
A QG +D ++ L G N +N D G+TPL AS G V+ LL+
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------------ 57
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
WG A H+ A + E +AL ++ G+ DIV
Sbjct: 58 --------WG--------------------ADPHILAKERE--SALSLASTGGYTDIVGL 87
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVA 564
+LE D DIN D +G T L + + K V LL +GA + E G TP+ +A
Sbjct: 88 LLERDVDINIYDWNGGTPLLYAV-----RGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Query: 565 AFEGHRDVCEIL 576
G+R V +++
Sbjct: 143 VALGYRKVQQVI 154
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
+N+ D G T L + S+ G + V LLE GA +E + L +A+ G+ D
Sbjct: 29 VNKPDERGFTPLIWA-----SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD 83
Query: 572 VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA 631
+ +LLE + D + D +G TPL A H CV LL GA + T G T + +A
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 632 AQG 634
A G
Sbjct: 144 ALG 146
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
AAQG +D + + L +G L D G+TPL +A+ G E R LL
Sbjct: 10 AAQGELDQLKEHLRKGDNL-------------VNKPDERGFTPLIWASAFGEIETVRFLL 56
Query: 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
E GA + + + L LA+ G+ +V + LE+ + ++N +G T L
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L +AA+ G + LL V+ + GRT L V GN ++ +LL RG
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
+ +D G+ +H AA G + + LLE A V+ DN+G PL LAA++
Sbjct: 62 --------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
GH +VE ++ +NV ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
GRTAL+ + LG + + LL GA+ + D G + +A G D +
Sbjct: 38 GRTALQ----------VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQ 87
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA-KVDHEDREGMTPLL 562
++LE+ AD+N +DN+G L ++A +G+ +VV L++ A V H + +G T
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAA-----KEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 563 VAAFEGHRDVCEILLENEA 581
+A G +V ++ N A
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L ++A G + ++S+L+ + ++N Q+ GRTAL V L G ++ LL +GA
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL------GNPEIARRLLLRGAN 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
D +DR G + AA G D + LLE +AD + D G PL AA GH V L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 610 L-FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ + V + +G T +A G +VV+ + G
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509
A WG L G L + LL +VNA + GRTAL +G+ +I +L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRG 60
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
A+ + +D G + +A G+ + LLE A V+ ED EG PL +AA EGH
Sbjct: 61 ANPDLKDRTGFAVIHDAA-----RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 570 RDVCEILLENEADQ-DHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
V E L+++ A H + G T A G V+L+ GA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
+L D+ G ++ AA GF+D +Q LLE A++N D EG PL A+ GH VV+ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 432 Q-SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA 477
+ + ++V + G TA A G E VV L+ A GA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE---------VVSLMQANGA 161
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
L AA +G ++ + LL+ N+N + G T L+ G +LLL+ GA+ + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
G + AA G L+ ++ LL A VN D+EG L +A GH +
Sbjct: 68 RTGFAVIHDAARAGFLD---------TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 502 VSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
V ++++ A ++ +++ G TA ++ L G +VVS++ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLY-----GRNEVVSLMQANGA 161
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G+TAL V G + + LL GAN + D G+ + A+ G ++ LL+ ADV
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N D G L AA GHL V V L+ ++V + +G TA + G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRV--------VEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 498 HADIVS 503
++VS
Sbjct: 149 RNEVVS 154
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
AA+ G D ++ LL + AD D+ G +AAK GH V+ L ++
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L +AA+ G + LL V+ + GRT L V GN ++ +LL RG
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
+ +D G+ +H AA G + + LLE A V+ DN+G PL LAA++
Sbjct: 62 --------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
GH +VE ++ +NV ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
GRTAL+ + LG + + LL GA+ + D G + +A G D +
Sbjct: 38 GRTALQ----------VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQ 87
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA-KVDHEDREGMTPLL 562
++LE+ AD+N +DN+G L ++A +G+ +VV L++ A V H + +G T
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAA-----KEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 563 VAAFEGHRDVCEILLENEA 581
+A G +V ++ N A
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L ++A G + ++S+L+ + ++N Q+ GRTAL V L G ++ LL +GA
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL------GNPEIARRLLLRGAN 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
D +DR G + AA G D + LLE +AD + D G PL AA GH V L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 610 L-FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ + V + +G T +A G +VV+ + G
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509
A WG L G L + LL +VNA + GRTAL +G+ +I +L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
A+ + +D G + +A G+ + LLE A V+ ED EG PL +AA EGH
Sbjct: 61 ANPDLKDRTGFAVIHDAA-----RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 570 RDVCEILLENEADQ-DHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
V E L+++ A H + G T A G V+L+ GA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
+L D+ G ++ AA GF+D +Q LLE A++N D EG PL A+ GH VV+ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 432 Q-SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA 477
+ + ++V + G TA A G E VV L+ A GA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE---------VVSLMQANGA 161
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
L AA +G ++ + LL+ N+N + G T L+ G +LLL+ GA+ + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
G + AA G L+ ++ LL A VN D+EG L +A GH +
Sbjct: 68 RTGFAVIHDAARAGFLD---------TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 502 VSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
V ++++ A ++ +++ G TA ++ L G +VVS++ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLY-----GRNEVVSLMQANGA 161
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G+TAL V G + + LL GAN + D G+ + A+ G ++ LL+ ADV
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N D G L AA GHL V V L+ ++V + +G TA + G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRV--------VEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 498 HADIVS 503
++VS
Sbjct: 149 RNEVVS 154
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
AA+ G D ++ LL + AD D+ G +AAK GH V+ L ++
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++N D +G+TPL A+ GH +V++LL++GADVN D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 445 RTALRAAAWGGHLEVTIVL 463
+TA + G+ ++ +L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADVN D G T L AA GHLE +V++LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLE---------IVEVLLK 56
Query: 475 AGAHVNAADSEGRTALIASAYMGHADI 501
AGA VNA D G+TA S G+ D+
Sbjct: 57 AGADVNAQDKFGKTAFDISIDNGNEDL 83
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
V++L+A GA VNA D +G T L +A GH +IV +L+ AD+N QD G+TA +S
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 42/82 (51%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD + DK G TPL AA GH V +LL GA V+ D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 621 AEGRTVLSVAAAQGNIDVVNQL 642
G+T ++ GN D+ L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+N +D DG T L ++A +G+ ++V +LL+ GA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-----REGHLEIVEVLLKAGAD 60
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEIL 576
V+ +D+ G T ++ G+ D+ EIL
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L+ GA V+ D DG PL LAA++GH +VE+ L+ A+VN +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKF 67
Query: 737 GRTALRVNMKN 747
G+TA +++ N
Sbjct: 68 GKTAFDISIDN 78
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
V IL+ GA V+ +D++G TPL +AA EGH ++ E+LL+ AD + DK G+T
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D +D G+TPLH AA EGH E+ LL+AGA V+ D G+ ++ +G+ L E+
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEI 86
Query: 722 F 722
Sbjct: 87 L 87
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYA 939
+ +AA+EGH + V +LL GAD D G+ AF ++ +G+E + +L++ A
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+G+K+ AA+ G +D VR+L+ GAD D G +AA+ GH E V LLK AD
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ DK G T L++AA +G ++ V++LL+AGA++N D G T + G+ + ++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEI 86
Query: 430 LLQSG 434
L ++
Sbjct: 87 LQKAA 91
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L +AA+ G + LL V+ + GRT L V GN ++ +LL RG
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
+ +D G +H AA G + + LLE A V+ DN+G PL LAA++
Sbjct: 62 --------NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
GH +VE ++ +NV ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
GRTAL+ + LG + + LL GA+ + D G + +A G D +
Sbjct: 38 GRTALQ----------VMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQ 87
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA-KVDHEDREGMTPLL 562
++LE+ AD+N +DN+G L ++A +G+ +VV L++ A V H + +G T
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAA-----KEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 563 VAAFEGHRDVCEILLENEA 581
+A G +V ++ N A
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509
A WG L G L + LL +VNA + GRTAL +G+ +I +L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
A+ + +D G + +A G+ + LLE A V+ ED EG PL +AA EGH
Sbjct: 61 ANPDLKDRTGNAVIHDAA-----RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 570 RDVCEILLENEADQ-DHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
V E L+++ A H + G T A G V+L+ GA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L ++A G + ++S+L+ + ++N Q+ GRTAL V L G ++ LL +GA
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL------GNPEIARRLLLRGAN 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
D +DR G + AA G D + LLE +AD + D G PL AA GH V L
Sbjct: 63 PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 610 L-FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ + V + +G T +A G +VV+ + G
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
+L D+ G ++ AA GF+D +Q LLE A++N D EG PL A+ GH VV+ L+
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 432 Q-SGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
+ + ++V + G TA A G EV ++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
L AA +G ++ + LL+ N+N + G T L+ G +LLL+ GA+ + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
G + AA G L+ ++ LL A VN D+EG L +A GH +
Sbjct: 68 RTGNAVIHDAARAGFLD---------TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 502 VSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
V ++++ A ++ +++ G TA ++ L G +VVS++ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLY-----GRNEVVSLMQANGA 161
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G+TAL V G + + LL GAN + D G + A+ G ++ LL+ ADV
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N D G L AA GHL V V L+ ++V + +G TA + G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRV--------VEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 498 HADIVS 503
++VS
Sbjct: 149 RNEVVS 154
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
AA+ G D ++ LL + AD D+ G +AAK GH V+ L ++
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
QT L++A + + LL AG + D G TPL A G A V +L QS
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS----- 100
Query: 439 CSDMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADS-EGRTALIASAY 495
C+ + L+A + GH L + + G L +V+LL++ GA VNA + GRTAL +
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160
Query: 496 MGHADIVSSILEYDADINQ 514
+ + D+VS +L+ AD+N+
Sbjct: 161 LQNPDLVSLLLKCGADVNR 179
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN 403
Q+ LH N + + L + D EL D G T L++A QG + +V +L ++
Sbjct: 46 QTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103
Query: 404 ------INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAWGGH 456
+ T+ G T L AS G+ +V+LL+ GADVN + GRTAL H
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL-------H 156
Query: 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
L V + L V LLL GA VN +G
Sbjct: 157 LAVDLQNPDL--VSLLLKCGADVNRVTYQG 184
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDK----HGQTALNVAAHQGFVDAVQ 395
D + + LH C + + + +SC L + K +G T L++A+ G++ V+
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 396 ILLEAGANINHTD-CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454
+L+ GA++N + C G T L A + +V LLL+ GADVN G + + WG
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ-LTWG 193
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL------FW 612
TPL +A ++ E LL D + D G TPL A G + V +L
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC-GW 671
+ + + G T L +A+ G + +V L+ G D ++ C G
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA--------------DVNAQEPCNGR 152
Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
T LH A + ++ LL+ GA V++V G +P
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG 714
++N TPLH A I E+ ALL AG + D G PL LA + G
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
+G+TAL++A D V +LL+ GA++N +G++P + +WG S ++
Sbjct: 150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ-LTWGRPSTRIQ 200
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 477 AHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY 536
A +N ++ +T L + +I ++L D +D G T L ++ G
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC-----EQGC 90
Query: 537 AKVVSILLEKGAK------VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK-S 589
V +L + + + G T L +A+ G+ + E+L+ AD + + +
Sbjct: 91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 150
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
GRT L A + + V+LLL GA V+ + +G + + + + + QL
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 203
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++ D G TPL A+ GH VVKLLL++GADVN D G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 445 RTALRAAAWGGHLEVTIVL 463
+TA + G+ ++ +L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADV D G T L AA GHLE VVKLLL
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE---------VVKLLLE 60
Query: 475 AGAHVNAADSEGRTALIASAYMGHADI 501
AGA VNA D G+TA S G+ D+
Sbjct: 61 AGADVNAQDKFGKTAFDISIDNGNEDL 87
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 42/82 (51%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD DK+G TPL AA GH V LLL GA V+ D
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 621 AEGRTVLSVAAAQGNIDVVNQL 642
G+T ++ GN D+ L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
V++L+A GA V A D G T L +A GH ++V +LE AD+N QD G+TA +S
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ +A G D V ++ AD+ +D +G T L ++A +G+ +VV +LLE GA
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA-----RNGHLEVVKLLLEAGAD 64
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEIL 576
V+ +D+ G T ++ G+ D+ EIL
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L+ GA V D +G PL LAA++GH +V++ LE A+VN +
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDKF 71
Query: 737 GRTALRVNMKN 747
G+TA +++ N
Sbjct: 72 GKTAFDISIDN 82
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D +D G TPLH AA GH EV + LLEAGA V+ D G+ ++ +G+ L E+
Sbjct: 31 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEI 90
Query: 722 F 722
Sbjct: 91 L 91
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
V IL+ GA V +D+ G TPL +AA GH +V ++LLE AD + DK G+T
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
S +G+K+ AA+ G +D VR+L+ GAD D G +AA++GH V++LL +
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 941 D 941
D
Sbjct: 64 D 64
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ DK+G T L++AA G ++ V++LLEAGA++N D G T + G+ + ++
Sbjct: 31 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEI 90
Query: 430 L 430
L
Sbjct: 91 L 91
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936
+ +AA+ GH + V+LLL GAD D G+ AF ++ +G+E + +L+
Sbjct: 43 LHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV---DHEDREGMTPLLVAAFEGHR 570
Q+D DGR L S S ++ S LL K V D+ D G TP +A G+
Sbjct: 31 QKDQDGRIPLHWSV-----SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 571 DVCEILLEN--EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
+V + L + + D + I G T L A L+ GA V D + L
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
AA+ G++ ++ L C G D+Q GWTPL +A EGH +
Sbjct: 146 RAASVGSLKLIELL--------CGLGKSAVNWQDKQ-----GWTPLFHALAEGHGDAAVL 192
Query: 689 LLEA-GAKVDQVDNDG 703
L+E GA+ D VDN G
Sbjct: 193 LVEKYGAEYDLVDNKG 208
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 587 DKSGRTPL-WAAASMGHASCVALLLFWGAYV---DTIDAEGRTVLSVAAAQGNIDVVNQL 642
D+ GR PL W+ + H + LL V D D G T +A + GN++VV L
Sbjct: 33 DQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
DR + D N G T LH A + EV + L+E GA V D
Sbjct: 92 YDRPL------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 139
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ PL AA G L+E+ ++ VN + G T L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANIN- 405
LH+ C EN ++ L S +L L+ D+ G+ L+ + + LL N+N
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 406 --HTDCEGWTPLRSASWGGHSAVVKLLLQSG--ADVNCSDMGGRTALRAAAWGGHLEVTI 461
+ D GWTP A G+ VVK L D+N G T L A EV+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 462 VL------------------------GPLCVVKLLLAAG-AHVNAADSEGRTALIASAYM 496
L G L +++LL G + VN D +G T L +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 497 GHADIVSSILE-YDADINQQDNDGRTALSVS 526
GH D ++E Y A+ + DN G A V+
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + H C+ N+ ++K+ DL + G T L++A + + + Q L+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG-ADVNCSDMGGRTALRAAAWGGHLE 458
GA++ D PL A+ G +++LL G + VN D G T L A GH +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
++ L+ GA + D++G A
Sbjct: 189 AAVL--------LVEKYGAEYDLVDNKGAKA 211
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 483 DSEGRTALIASAYMGHADIVSSILEYDADIN---QQDNDGRTALSVSALCVPSSDGYAKV 539
D +GR L S +I S +L ++N D+ G T ++ S G +V
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC-----SVGNLEV 87
Query: 540 VSILLEKGAKVDHED--REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
V L ++ K D +G+T L +A + +V + L+EN A DK + PL A
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 598 ASMGHASCVALLLFWG-AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
AS+G + LL G + V+ D +G T L A A+G+ D L+++
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV---DHEDREGMTPLLVAAFEGHR 570
Q+D DGR L S S ++ S LL K V D+ D G TP +A G+
Sbjct: 31 QKDQDGRIPLHWSV-----SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 571 DVCEILLEN--EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
+V + L + + D + I G T L A L+ GA V D + L
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
AA+ G++ ++ L C G D+Q GWTPL +A EGH +
Sbjct: 146 RAASVGSLKLIELL--------CGLGKSAVNWQDKQ-----GWTPLFHALAEGHGDAAVL 192
Query: 689 LLEA-GAKVDQVDNDG 703
L+E GA+ D VDN G
Sbjct: 193 LVEKYGAEYDLVDNKG 208
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 587 DKSGRTPL-WAAASMGHASCVALLLFWGAYV---DTIDAEGRTVLSVAAAQGNIDVVNQL 642
D+ GR PL W+ + H + LL V D D G T +A + GN++VV L
Sbjct: 33 DQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
DR + D N G T LH A + EV + L+E GA V D
Sbjct: 92 YDRPL------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 139
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ PL AA G L+E+ ++ VN + G T L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANIN- 405
LH+ C EN ++ L S +L L+ D+ G+ L+ + + LL N+N
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 406 --HTDCEGWTPLRSASWGGHSAVVKLLLQSG--ADVNCSDMGGRTALRAAAWGGHLEVTI 461
+ D GWTP A G+ VVK L D+N G T L A EV+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 462 VL------------------------GPLCVVKLLLAAG-AHVNAADSEGRTALIASAYM 496
L G L +++LL G + VN D +G T L +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 497 GHADIVSSILE-YDADINQQDNDGRTALSVS 526
GH D ++E Y A+ + DN G A V+
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + H C+ N+ ++K+ DL + G T L++A + + + Q L+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG-ADVNCSDMGGRTALRAAAWGGHLE 458
GA++ D PL A+ G +++LL G + VN D G T L A GH +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
++ L+ GA + D++G A
Sbjct: 189 AAVL--------LVEKYGAEYDLVDNKGAKA 211
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 483 DSEGRTALIASAYMGHADIVSSILEYDADIN---QQDNDGRTALSVSALCVPSSDGYAKV 539
D +GR L S +I S +L ++N D+ G T ++ S G +V
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC-----SVGNLEV 87
Query: 540 VSILLEKGAKVDHED--REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
V L ++ K D +G+T L +A + +V + L+EN A DK + PL A
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 598 ASMGHASCVALLLFWG-AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
AS+G + LL G + V+ D +G T L A A+G+ D L+++
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
Query: 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
QT L++A + + LL AG + D G TPL A G A V +L QS
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS----- 97
Query: 439 CSDMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADS-EGRTALIASAY 495
C+ + L+A + GH L + + G L +V+LL++ GA VNA + GRTAL +
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 157
Query: 496 MGHADIVSSILEYDADINQQDNDGRTALSVS 526
+ + D+VS +L+ AD+N+ G + ++
Sbjct: 158 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 188
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN 403
Q+ LH N + + L + D EL D G T L++A QG + +V +L ++
Sbjct: 43 QTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 100
Query: 404 ------INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAWGGH 456
+ T+ G T L AS G+ +V+LL+ GADVN + GRTAL H
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL-------H 153
Query: 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
L V + L V LLL GA VN +G
Sbjct: 154 LAVDLQNPDL--VSLLLKCGADVNRVTYQG 181
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDK----HGQTALNVAAHQGFVDAVQ 395
D + + LH C + + + +SC L + K +G T L++A+ G++ V+
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 396 ILLEAGANINHTD-CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454
+L+ GA++N + C G T L A + +V LLL+ GADVN G + + WG
Sbjct: 132 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ-LTWG 190
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 21/166 (12%)
Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
A ++ ++ TPL +A ++ E LL D + D G TPL A G + V
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 92
Query: 608 LLL------FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSL 661
+L + + + G T L +A+ G + +V L+ G
Sbjct: 93 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA-------------- 138
Query: 662 DEQHRDNC-GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
D ++ C G T LH A + ++ LL+ GA V++V G +P
Sbjct: 139 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG 714
++N TPLH A I E+ ALL AG + D G PL LA + G
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 86
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
+G+TAL++A D V +LL+ GA++N +G++P + +WG S ++
Sbjct: 147 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ-LTWGRPSTRIQ 197
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 477 AHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY 536
A +N ++ +T L + +I ++L D +D G T L ++ G
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC-----EQGC 87
Query: 537 AKVVSILLEKGAK------VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK-S 589
V +L + + + G T L +A+ G+ + E+L+ AD + + +
Sbjct: 88 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 147
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
GRT L A + + V+LLL GA V+ + +G + + + + + QL
Sbjct: 148 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 200
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV---DHEDREGMTPLLVAAFEGHR 570
Q+D DGR L S S ++ S LL K V D+ D G TP +A G+
Sbjct: 31 QKDQDGRIPLHWSV-----SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 571 DVCEILLEN--EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
+V + L + + D + I G T L A L+ GA V D + L
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
AA+ G++ ++ L C G D+Q GWTPL +A EGH +
Sbjct: 146 RAASVGSLKLIELL--------CGLGKSAVNWQDKQ-----GWTPLFHALAEGHGDAAVL 192
Query: 689 LLEA-GAKVDQVDNDG 703
L+E GA+ D VDN G
Sbjct: 193 LVEKYGAEYDLVDNKG 208
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 587 DKSGRTPL-WAAASMGHASCVALLLFWGAYV---DTIDAEGRTVLSVAAAQGNIDVVNQL 642
D+ GR PL W+ + H + LL V D D G T +A + GN++VV L
Sbjct: 33 DQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
DR + D N G T LH A + EV + L+E GA V D
Sbjct: 92 YDRPL------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 139
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ PL AA G L+E+ ++ VN + G T L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANIN- 405
LH+ C EN ++ L S +L L+ D+ G+ L+ + + LL N+N
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 406 --HTDCEGWTPLRSASWGGHSAVVKLLLQSG--ADVNCSDMGGRTALRAAAWGGHLEVTI 461
+ D GWTP A G+ VVK L D+N G T L A EV+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 462 VL------------------------GPLCVVKLLLAAG-AHVNAADSEGRTALIASAYM 496
L G L +++LL G + VN D +G T L +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 497 GHADIVSSILE-YDADINQQDNDGRTALSVS 526
GH D ++E Y A+ + DN G A V+
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + H C+ N+ ++K+ DL + G T L++A + + + Q L+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG-ADVNCSDMGGRTALRAAAWGGHLE 458
GA++ D PL A+ G +++LL G + VN D G T L A GH +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
++ L+ GA + D++G A
Sbjct: 189 AAVL--------LVEKYGAEYDLVDNKGAKA 211
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 483 DSEGRTALIASAYMGHADIVSSILEYDADIN---QQDNDGRTALSVSALCVPSSDGYAKV 539
D +GR L S +I S +L ++N D+ G T ++ S G +V
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC-----SVGNLEV 87
Query: 540 VSILLEKGAKVDHED--REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
V L ++ K D +G+T L +A + +V + L+EN A DK + PL A
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 598 ASMGHASCVALLLFWG-AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
AS+G + LL G + V+ D +G T L A A+G+ D L+++
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYA 537
VN ADS G TAL S + +V +L+ +++Q+ G + + ++AL +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
+ V L G + G T L++A G DV + LL EAD + D G T L A
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
Query: 598 ASMGHASCVALLL-FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
GH LLL + D +G T L VA G ++ + L R
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGA-NINHTDCEGWTPLRSASWGGH------ 423
+ + D +G TAL+ + VQ LL++G ++ + G++P+ +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 424 SAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
V++L + S G+TAL A G ++V VK LLA A VN D
Sbjct: 164 ETVLQLFRLGNINAKASQ-AGQTALMLAVSHGRVDV---------VKALLACEADVNVQD 213
Query: 484 SEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGRTALSVS 526
+G TAL+ + GH +I +L + DI+ D DG TAL V+
Sbjct: 214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ-SG 434
+ GQTAL +A G VD V+ LL A++N D +G T L A GH + LLL
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS 240
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
D++ +D G TAL A G E+ +L
Sbjct: 241 CDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG--------------MILGCLAGGRQTGSL 661
V+ D+ G T L + + N VV QLLD G ++L LA + +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 662 D-----------EQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
+ G T L A G +V +ALL A V+ D+DG L+ A
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
Query: 711 AQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNM 745
+ GH + + L +++ DG TAL V +
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL 258
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKS--CEALDLELVDKHGQ--------TALNVA 385
+ + DS + LH + N +++ L S C+ VDK + TAL
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK------VDKQNRAGYSPIMLTALATL 157
Query: 386 AHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
Q ++ V L G NIN + G T L A G VVK LL ADVN D G
Sbjct: 158 KTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG 216
Query: 445 RTALRAAAWGGHLEVTIVL--GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
TAL A GH E+ +L P C + L D +G TAL+ + G ++I
Sbjct: 217 STALMCACEHGHKEIAGLLLAVPSCDISL----------TDRDGSTALMVALDAGQSEIA 266
Query: 503 SSI 505
S +
Sbjct: 267 SML 269
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
D+NQ D+ G S L +G + VV +L+ +GA+++ +R TPL +AA GHR
Sbjct: 31 DLNQGDDHG-----FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR 85
Query: 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
D+ + LL+ +AD + +++ G PL A G L+ GA V + G + A
Sbjct: 86 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Query: 631 AA 632
A
Sbjct: 146 KA 147
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 351 CAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE 410
C E N ++ +L + E DL D HG + L+ A +G V++L+ GA IN +
Sbjct: 13 CREGNAVAVRLWLDNTEN-DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
TPL A+ GH +V+ LLQ AD+N + G L A + G +V
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
E M + EG+ + L+N E D + D G +PL A G ++ V +L+ GA
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
++ ++ T L +AA+ G+ D+V +LL + + +H G PL
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV----------NEH----GNVPL 109
Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
HYA G ++V L+ GA V + G P+
Sbjct: 110 HYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
D+ G++PLH+A EG V L+ GA+++ ++ PL LAA GH +V+ L QY
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QY 94
Query: 727 EANVNQKSHDGRTAL 741
+A++N + G L
Sbjct: 95 KADINAVNEHGNVPL 109
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 422 GHSAVVKLLL-QSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480
G++ V+L L + D+N D G + L A G VV++L+ GA +N
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS---------AVVEMLIMRGARIN 66
Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
+ T L +A GH DIV +L+Y ADIN + G L + G +V
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-----GQDQVA 121
Query: 541 SILLEKGAKVDHEDREGMTPL 561
L+ GA V ++ G P+
Sbjct: 122 EDLVANGALVSICNKYGEMPV 142
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 534 DGYAKVVSILLEKGAK-VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
+G A V + L+ ++ D G +PL A EG V E+L+ A + +++ T
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 74
Query: 593 PLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
PL AAS GH V LL + A ++ ++ G L A G V L+ G ++
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 330 DTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG 389
D + + D S LH C E +++ + + ++++ T L++AA G
Sbjct: 26 DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI--MRGARINVMNRGDDTPLHLAASHG 83
Query: 390 FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN-CSDMGGRTAL 448
D VQ LL+ A+IN + G PL A + G V + L+ +GA V+ C+ G
Sbjct: 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 143
Query: 449 RAAA 452
+A A
Sbjct: 144 KAKA 147
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
D G + L A +G VV L+ RG + + G T PLH AA
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT--------------PLHLAAS 81
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVE 720
GH ++ + LL+ A ++ V+ G PL A G + E
Sbjct: 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE 122
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 544 LEKGAKVD--HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
L GA V+ + ++ TPL+ A CE LL+N A+ + D +GR PL A +G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 602 HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
H L L GA + D+EGR L++A N D+V L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDC--EGWTPLRSASWGGHSAVVKLLLQSGA 435
G + H + + L GA++N + + TPL A+ + LLQ+GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 436 DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY 495
+VN +D GR G L +LG + L L GA + A DSEGR L +
Sbjct: 260 NVNQADSAGR---------GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Query: 496 MGHADIVS 503
+ADIV+
Sbjct: 311 TANADIVT 318
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 393 AVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452
A + LL+ GAN+N D G PL A+ GH+ + L L+ GAD+ D GR L A
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Query: 453 WGGHLEVTIVL 463
+ ++ +L
Sbjct: 310 ETANADIVTLL 320
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
L + LL GA+VN ADS GR L + +GH + L+ AD+ +D++GR L++
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 526 S 526
+
Sbjct: 308 A 308
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
TPL A C LL+ GA V+Q D+ GR PL A GH L +FL++ A++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLG 295
Query: 732 QKSHDGRTALRVNMKNVT 749
+ +GR L + M+
Sbjct: 296 ARDSEGRDPLTIAMETAN 313
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 492 ASAYMGHADIVSSILEYDADIN----QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
AS + ++ L + AD+N QDN + L ++ LL+ G
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDN-------ATPLIQATAANSLLACEFLLQNG 258
Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
A V+ D G PL A GH + + L+ AD D GR PL A +A V
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 608 LL 609
LL
Sbjct: 319 LL 320
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
D+ G PLH+A I GH + L+ GA + D++GR PL +A + + +V +
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
D+NQ D+ G S L +G + VV +L+ +GA+++ +R TPL +AA GHR
Sbjct: 26 DLNQGDDHG-----FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR 80
Query: 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
D+ + LL+ +AD + +++ G PL A G L+ GA V + G + A
Sbjct: 81 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Query: 631 AA 632
A
Sbjct: 141 KA 142
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 351 CAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE 410
C E N ++ +L + E DL D HG + L+ A +G V++L+ GA IN +
Sbjct: 8 CREGNAVAVRLWLDNTEN-DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 66
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
TPL A+ GH +V+ LLQ AD+N + G L A + G +V
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 116
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 558 MTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
M + EG+ + L+N E D + D G +PL A G ++ V +L+ GA +
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ ++ T L +AA+ G+ D+V +LL + + +H G PLHY
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV----------NEH----GNVPLHY 106
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
A G ++V L+ GA V + G P+
Sbjct: 107 ACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
D+ G++PLH+A EG V L+ GA+++ ++ PL LAA GH +V+ L QY
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QY 89
Query: 727 EANVNQKSHDGRTAL 741
+A++N + G L
Sbjct: 90 KADINAVNEHGNVPL 104
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 422 GHSAVVKLLLQSGA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480
G++ V+L L + D+N D G + L A G VV++L+ GA +N
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS---------AVVEMLIMRGARIN 61
Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
+ T L +A GH DIV +L+Y ADIN + G L + G +V
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-----GQDQVA 116
Query: 541 SILLEKGAKVDHEDREGMTPL 561
L+ GA V ++ G P+
Sbjct: 117 EDLVANGALVSICNKYGEMPV 137
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 534 DGYAKVVSILLEKGAK-VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
+G A V + L+ ++ D G +PL A EG V E+L+ A + +++ T
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 69
Query: 593 PLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
PL AAS GH V LL + A ++ ++ G L A G V L+ G ++
Sbjct: 70 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 330 DTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG 389
D + + D S LH C E +++ + + ++++ T L++AA G
Sbjct: 21 DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI--MRGARINVMNRGDDTPLHLAASHG 78
Query: 390 FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN-CSDMGGRTAL 448
D VQ LL+ A+IN + G PL A + G V + L+ +GA V+ C+ G
Sbjct: 79 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 138
Query: 449 RAAA 452
+A A
Sbjct: 139 KAKA 142
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
D G + L A +G VV L+ RG + + G T PLH AA
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT--------------PLHLAAS 76
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVE 720
GH ++ + LL+ A ++ V+ G PL A G + E
Sbjct: 77 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE 117
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 544 LEKGAKVD--HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
L GA V+ + ++ TPL+ A CE LL+N A+ + D +GR PL A +G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 602 HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
H L L GA + D+EGR L++A N D+V L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDC--EGWTPLRSASWGGHSAVVKLLLQSGA 435
G + H + + L GA++N + + TPL A+ + LLQ+GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 436 DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY 495
+VN +D GR G L +LG + L L GA + A DSEGR L +
Sbjct: 260 NVNQADSAGR---------GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Query: 496 MGHADIVS 503
+ADIV+
Sbjct: 311 TANADIVT 318
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 393 AVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452
A + LL+ GAN+N D G PL A+ GH+ + L L+ GAD+ D GR L A
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Query: 453 WGGHLEVTIVL 463
+ ++ +L
Sbjct: 310 ETANADIVTLL 320
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
L + LL GA+VN ADS GR L + +GH + L+ AD+ +D++GR L++
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 526 S 526
+
Sbjct: 308 A 308
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
TPL A C LL+ GA V+Q D+ GR PL A GH L +FL++ A++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLG 295
Query: 732 QKSHDGRTALRVNMKNVT 749
+ +GR L + M+
Sbjct: 296 ARDSEGRDPLTIAMETAN 313
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 492 ASAYMGHADIVSSILEYDADIN----QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
AS + ++ L + AD+N QDN + L ++ LL+ G
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDN-------ATPLIQATAANSLLACEFLLQNG 258
Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
A V+ D G PL A GH + + L+ AD D GR PL A +A V
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 608 LL 609
LL
Sbjct: 319 LL 320
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
D+ G PLH+A I GH + L+ GA + D++GR PL +A + + +V +
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 544 LEKGAKVD--HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
L GA V+ + ++ TPL+ A CE LL+N A+ + D +GR PL A +G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 602 HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
H L L GA + D+EGR L++A N D+V L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDC--EGWTPLRSASWGGHSAVVKLLLQSGA 435
G + H + + L GA++N + + TPL A+ + LLQ+GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 436 DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY 495
+VN +D GR G L +LG + L L GA + A DSEGR L +
Sbjct: 260 NVNQADSAGR---------GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Query: 496 MGHADIVS 503
+ADIV+
Sbjct: 311 TANADIVT 318
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 393 AVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452
A + LL+ GAN+N D G PL A+ GH+ + L L+ GAD+ D GR L A
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Query: 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
+ ++ +L + K+ A A A D
Sbjct: 310 ETANADIVTLLR---LAKMREAEAAQGQAGD 337
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
L + LL GA+VN ADS GR L + +GH + L+ AD+ +D++GR L++
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 526 S 526
+
Sbjct: 308 A 308
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
TPL A C LL+ GA V+Q D+ GR PL A GH L +FL++ A++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLG 295
Query: 732 QKSHDGRTALRVNMKNVT 749
+ +GR L + M+
Sbjct: 296 ARDSEGRDPLTIAMETAN 313
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 492 ASAYMGHADIVSSILEYDADIN----QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
AS + ++ L + AD+N QDN + L ++ LL+ G
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDN-------ATPLIQATAANSLLACEFLLQNG 258
Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
A V+ D G PL A GH + + L+ AD D GR PL A +A V
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 608 LL 609
LL
Sbjct: 319 LL 320
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
D+ G PLH+A I GH + L+ GA + D++GR PL +A + + +V +
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G D V+IL+ GA++ D G TPL A+ GH VVKLLL++GADV D G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 445 RTALRAAAWGGHLEVTIVL 463
+TA + G+ ++ +L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G V++L+ +GADV D G T L AA GHLE VVKLLL
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE---------VVKLLLE 78
Query: 475 AGAHVNAADSEGRTALIASAYMGHADI 501
AGA V A D G+TA S G+ D+
Sbjct: 79 AGADVXAQDKFGKTAFDISIDNGNEDL 105
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 41/82 (50%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL AA G D IL+ N AD DK+G TPL AA GH V LLL GA V D
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 621 AEGRTVLSVAAAQGNIDVVNQL 642
G+T ++ GN D+ L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
V++L+A GA V A D G T L +A GH ++V +LE AD+ QD G+TA +S
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
L+ G+H+ S+ L+ +A G D V ++ AD+ +D +G T L ++A
Sbjct: 13 LVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA---- 65
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+G+ +VV +LLE GA V +D+ G T ++ G+ D+ EIL
Sbjct: 66 -RNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA G ++ R L+ GA V D +G PL LAA++GH +V++ LE A+V +
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKF 89
Query: 737 GRTALRVNMKN 747
G+TA +++ N
Sbjct: 90 GKTAFDISIDN 100
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
D +D G TPLH AA GH EV + LLEAGA V D G+ ++ +G+ L E+
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Query: 722 F 722
Sbjct: 109 L 109
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
V IL+ GA V +D+ G TPL +AA GH +V ++LLE AD DK G+T
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 870 RDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHE 929
R +HM S +G+K+ AA+ G +D VR+L+ GAD D G +AA++GH
Sbjct: 16 RGSHM-----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL 70
Query: 930 TVLRLLKQYADD 941
V++LL + D
Sbjct: 71 EVVKLLLEAGAD 82
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936
+ +AA+ GH + V+LLL GAD D G+ AF ++ +G+E + +L+
Sbjct: 61 LHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ DK+G T L++AA G ++ V++LLEAGA++ D G T + G+ + ++
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Query: 430 L 430
L
Sbjct: 109 L 109
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
L AA +G V+ V+ LLEAGAN N + G P++ G + V +LLL GA+ NC+D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCAD 74
Query: 442 MGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
T + AA G L+ +VL AGA ++ D+ GR + + +GH D
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLH---------RAGARLDVRDAWGRLPVDLAEELGHRD 125
Query: 501 I 501
+
Sbjct: 126 V 126
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V+ LL AGA+ NA +S GR I MG A + +L + A+ N D T A
Sbjct: 28 VRALLEAGANPNAPNSYGRRP-IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDA- 85
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+ +G+ + +L GA++D D G P+ +A GHRDV L
Sbjct: 86 ---AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L +A G + V ++LE A+ N ++ GR + V + G A+V +LL GA+
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM------GSARVAELLLLHGAE 69
Query: 550 VDHEDREGMT-PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
+ D +T P+ AA EG D +L A D D GR P+ A +GH
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 627 LSVAAAQGNIDVVNQLLDRGM------------ILGCLAGGRQTGSLDEQH--RDNCG-- 670
L+ AAA+G ++ V LL+ G I + G + L H NC
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 75
Query: 671 ---WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
P+H AA EG + L AGA++D D GR P+ LA + GH
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
AA +GF+D + +L AGA ++ D G P+ A GH V + L
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 359 LKTFLKSCEALDLELVDKHGQ--TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416
++T K C + D G+ T L+ AA V V+ LL+ GA+++ D G PL
Sbjct: 21 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 80
Query: 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476
+A GH V +LL++ GA VN +D+ T L AA G E + KLLL G
Sbjct: 81 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE---------ICKLLLQHG 131
Query: 477 AHVNAADSEGRTAL 490
A + +G T L
Sbjct: 132 ADPTKKNRDGNTPL 145
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 587 DKSGR--TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
D GR TPL AA S V LL GA V D G L A + G+ +V L+
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
G ++ D +TPLH AA +G E+C+ LL+ GA + + DG
Sbjct: 97 HGAVVNVA--------------DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142
Query: 705 APLILAAQDGHYHLVEMF 722
PL L +DG + ++
Sbjct: 143 TPLDL-VKDGDTDIQDLL 159
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 616 VDTIDAEGR--TVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
V+ D EGR T L AA + VV LL G D +D G P
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA--------------DVHAKDKGGLVP 78
Query: 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
LH A GH EV L++ GA V+ D PL AA G Y + ++ L Q+ A+ +K
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKK 137
Query: 734 SHDGRTAL 741
+ DG T L
Sbjct: 138 NRDGNTPL 145
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR--TALSVSALCVPSSDGYAKV 539
+SE L+ +A G + V + + +N +D +GR T L +A GY +V
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAA-------GYNRV 55
Query: 540 --VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
V LL+ GA V +D+ G+ PL A GH +V E+L+++ A + D TPL A
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 598 ASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
A+ G LLL GA + +G T L + G+ D+ + L
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 550 VDHEDREGM--TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
V+ D EG TPL AA V E LL++ AD DK G PL A S GH
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 608 LLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
LL+ GA V+ D T L AAA+G ++ LL G
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 359 LKTFLKSCEALDLELVDKHGQ--TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416
++T K C + D G+ T L+ AA V V+ LL+ GA+++ D G PL
Sbjct: 25 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 84
Query: 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476
+A GH V +LL++ GA VN +D+ T L AA G E + KLLL G
Sbjct: 85 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE---------ICKLLLQHG 135
Query: 477 AHVNAADSEGRTAL 490
A + +G T L
Sbjct: 136 ADPTKKNRDGNTPL 149
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 587 DKSGR--TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
D GR TPL AA S V LL GA V D G L A + G+ +V L+
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
G ++ D +TPLH AA +G E+C+ LL+ GA + + DG
Sbjct: 101 HGAVVNVA--------------DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 146
Query: 705 APLILAAQDGHYHLVEMF 722
PL L +DG + ++
Sbjct: 147 TPLDL-VKDGDTDIQDLL 163
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 616 VDTIDAEGR--TVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
V+ D EGR T L AA + VV LL G D +D G P
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA--------------DVHAKDKGGLVP 82
Query: 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
LH A GH EV L++ GA V+ D PL AA G Y + ++ L Q+ A+ +K
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKK 141
Query: 734 SHDGRTAL 741
+ DG T L
Sbjct: 142 NRDGNTPL 149
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR--TALSVSALCVPSSDGY 536
++ +SE L+ +A G + V + + +N +D +GR T L +A GY
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAA-------GY 56
Query: 537 AKV--VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
+V V LL+ GA V +D+ G+ PL A GH +V E+L+++ A + D TPL
Sbjct: 57 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 116
Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
AA+ G LLL GA + +G T L + G+ D+ + L
Sbjct: 117 HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 163
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 550 VDHEDREGM--TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
V+ D EG TPL AA V E LL++ AD DK G PL A S GH
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 608 LLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
LL+ GA V+ D T L AAA+G ++ LL G
Sbjct: 97 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 135
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 359 LKTFLKSCEALDLELVDKHGQ--TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416
++T K C + D G+ T L+ AA V V+ LL+ GA+++ D G PL
Sbjct: 23 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 82
Query: 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476
+A GH V +LL++ GA VN +D+ T L AA G E + KLLL G
Sbjct: 83 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE---------ICKLLLQHG 133
Query: 477 AHVNAADSEGRTAL 490
A + +G T L
Sbjct: 134 ADPTKKNRDGNTPL 147
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 587 DKSGR--TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
D GR TPL AA S V LL GA V D G L A + G+ +V L+
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
G ++ D +TPLH AA +G E+C+ LL+ GA + + DG
Sbjct: 99 HGAVVNVA--------------DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144
Query: 705 APLILAAQDGHYHLVEMF 722
PL L +DG + ++
Sbjct: 145 TPLDL-VKDGDTDIQDLL 161
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR--TALSVSALCVPSSDGY 536
+ + +SE L+ +A G + V + + +N +D +GR T L +A GY
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAA-------GY 54
Query: 537 AKV--VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
+V V LL+ GA V +D+ G+ PL A GH +V E+L+++ A + D TPL
Sbjct: 55 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 114
Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
AA+ G LLL GA + +G T L + G+ D+ + L
Sbjct: 115 HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 616 VDTIDAEGR--TVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
V+ D EGR T L AA + VV LL G D +D G P
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA--------------DVHAKDKGGLVP 80
Query: 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
LH A GH EV L++ GA V+ D PL AA G Y + ++ L Q+ A+ +K
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKK 139
Query: 734 SHDGRTAL 741
+ DG T L
Sbjct: 140 NRDGNTPL 147
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 550 VDHEDREGM--TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
V+ D EG TPL AA V E LL++ AD DK G PL A S GH
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 608 LLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
LL+ GA V+ D T L AAA+G ++ LL G
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 133
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSA 425
E D++ VD++G+TAL A G V++L EAGA+++H D G T L A+
Sbjct: 66 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 125
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAA 451
VV+ L++ GAD+ D G TAL A
Sbjct: 126 VVEALVELGADIEVEDERGLTALELA 151
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 481 AAD--SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
AAD SE T +A +S +LE D D++ D +GRTAL A G K
Sbjct: 38 AADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA-----GLGSDK 91
Query: 539 VVSILLEKGAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
V +L E GA +DH D R G+T L +AA +V E L+E AD + D+ G T L
Sbjct: 92 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-NDGRTALSVSALCVPSSDGYA 537
V+A D GRTAL+ A +G V + E AD++ +D G TAL ++A GY
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA-------GYV 122
Query: 538 K--VVSILLEKGAKVDHEDREGMTPLLVA 564
+ VV L+E GA ++ ED G+T L +A
Sbjct: 123 RPEVVEALVELGADIEVEDERGLTALELA 151
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
VPSS A VVS E TP AA + LLE+ D D +D++
Sbjct: 32 VPSSYIAADVVS--------------EYETPWWTAARKADEQALSQLLEDR-DVDAVDEN 76
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAE-GRTVLSVAAAQGNIDVVNQLLDRG 646
GRT L A +G CV LL GA +D D G T L +AA +VV L++ G
Sbjct: 77 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 833 YLCSLNDGHLIH-------AVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGE 885
YL DGH A D+ +T +A A ++ S+ R + + G
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGR 78
Query: 886 K-ISIAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGHETVLRLLKQYADDSE 943
+ A G + CVRLL GAD H D G A +AA V+ L + D E
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSA 425
E D++ VD++G+TAL A G V++L EAGA+++H D G T L A+
Sbjct: 65 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 124
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAA 451
VV+ L++ GAD+ D G TAL A
Sbjct: 125 VVEALVELGADIEVEDERGLTALELA 150
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 481 AAD--SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
AAD SE T +A +S +LE D D++ D +GRTAL A G K
Sbjct: 37 AADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA-----GLGSDK 90
Query: 539 VVSILLEKGAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
V +L E GA +DH D R G+T L +AA +V E L+E AD + D+ G T L
Sbjct: 91 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-NDGRTALSVSALCVPSSDGYA 537
V+A D GRTAL+ A +G V + E AD++ +D G TAL ++A GY
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA-------GYV 121
Query: 538 K--VVSILLEKGAKVDHEDREGMTPLLVA 564
+ VV L+E GA ++ ED G+T L +A
Sbjct: 122 RPEVVEALVELGADIEVEDERGLTALELA 150
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
VPSS A VVS E TP AA + LLE+ D D +D++
Sbjct: 31 VPSSYIAADVVS--------------EYETPWWTAARKADEQALSQLLEDR-DVDAVDEN 75
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAE-GRTVLSVAAAQGNIDVVNQLLDRG 646
GRT L A +G CV LL GA +D D G T L +AA +VV L++ G
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 833 YLCSLNDGHLIH-------AVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGE 885
YL DGH A D+ +T +A A ++ S+ R + + G
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGR 77
Query: 886 K-ISIAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGHETVLRLLKQYADDSE 943
+ A G + CVRLL GAD H D G A +AA V+ L + D E
Sbjct: 78 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G+ L+ AA G ++ ++ LL GA+IN D TPL SA + GH + VKLLL GAD
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 438 NCSDMGGRTALRA 450
G TAL A
Sbjct: 95 TVKGPDGLTALEA 107
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
VK + G DVN + GGR L AA G LE+ ++ LL GA +NA D
Sbjct: 18 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI---------LEFLLLKGADINAPDKHH 68
Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
T L+++ Y GH V +L AD + DG TAL +
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
G D V + D+N+ GR L +A C G +++ LL KGA ++ D+
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-----GQLEILEFLLLKGADINAPDKH 67
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWA 596
+TPLL A +EGH ++LL AD+ G T L A
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEA 107
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
A G +D V+ + G ++N T G PL A+ G +++ LL GAD+N D
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
T L +A + GH+ VKLLL+ GA +G TAL A+
Sbjct: 69 ITPLLSAVYEGHVS---------CVKLLLSKGADKTVKGPDGLTALEAT 108
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 40/88 (45%)
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
KG V+ G PL AA G ++ E LL AD + DK TPL +A GH SC
Sbjct: 24 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 83
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
V LLL GA +G T L Q
Sbjct: 84 VKLLLSKGADKTVKGPDGLTALEATDNQ 111
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G PLHYAA G E+ LL GA ++ D PL+ A +GH V++ L + A+
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GAD 93
Query: 730 VNQKSHDGRTALRVNMKNVTK 750
K DG TAL K
Sbjct: 94 KTVKGPDGLTALEATDNQAIK 114
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
D+ DKH T L A ++G V V++LL GA+ +G T L + + +K
Sbjct: 60 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD----NQAIKA 115
Query: 430 LLQ 432
LLQ
Sbjct: 116 LLQ 118
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
L AA +G V+ V+ LLEAGA N + G P++ G + V +LLL GA+ NC+D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCAD 74
Query: 442 MGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
T + AA G L+ +VL AGA ++ D+ GR + + +GH D
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLH---------RAGARLDVRDAWGRLPVDLAEELGHRD 125
Query: 501 I 501
+
Sbjct: 126 V 126
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V+ LL AGA NA +S GR I MG A + +L + A+ N D T A
Sbjct: 28 VRALLEAGALPNAPNSYGRRP-IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDA- 85
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+ +G+ + +L GA++D D G P+ +A GHRDV L
Sbjct: 86 ---AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L +A G + V ++LE A N ++ GR + V + G A+V +LL GA+
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM------GSARVAELLLLHGAE 69
Query: 550 VDHEDREGMT-PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
+ D +T P+ AA EG D +L A D D GR P+ A +GH
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 627 LSVAAAQGNIDVVNQLLDRGMILGC------------LAGGRQTGSLDEQH--RDNCG-- 670
L+ AAA+G ++ V LL+ G + + G + L H NC
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 75
Query: 671 ---WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
P+H AA EG + L AGA++D D GR P+ LA + GH
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
AA +GF+D + +L AGA ++ D G P+ A GH V + L
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
E D L + G TAL+ A G + V+ L++ G N+N D +GWTPL A+ + V
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 427 VKLLLQSGADV 437
K L++SGA V
Sbjct: 119 CKFLVESGAAV 129
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ S+ G D+V I+ D + +++G TAL +A+C G+ ++V L++ G
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH-NAVCA----GHTEIVKFLVQFGVN 95
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581
V+ D +G TPL AA + VC+ L+E+ A
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 388 QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA 447
+G D VQ ++ + + + EG T L +A GH+ +VK L+Q G +VN +D G T
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA 481
L AA +++ V K L+ +GA V A
Sbjct: 107 LHCAASCNNVQ---------VCKFLVESGAAVFA 131
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
+ EG TAL + GH +IV ++++ ++N D+DG T L +A C +V
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-----NNVQVCK 120
Query: 542 ILLEKGAKV 550
L+E GA V
Sbjct: 121 FLVESGAAV 129
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL ++ EG D+ + ++ D + G T L A GH V L+ +G V+ D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
++G T L AA+ N+ V L++ G
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G T LH A GH E+ + L++ G V+ D+DG PL AA + + + +E A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 730 VNQKSHDGRTA 740
D +TA
Sbjct: 130 FAMTYSDMQTA 140
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L +S G +V+ ++ D + + G TAL A GH E+ VK L+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI---------VKFLVQ 91
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADI 512
G +VNAADS+G T L +A + + ++E A +
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
EG T L A G+ ++V L+ G+ + D+ GWTPLH AA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAA--------------DSDGWTPLHCAASCN 114
Query: 682 HEEVCRALLEAGAKV 696
+ +VC+ L+E+GA V
Sbjct: 115 NVQVCKFLVESGAAV 129
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
EG+T L A GH ++ + L++ + + D G TPL AAS + L+ GA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 616 V 616
V
Sbjct: 129 V 129
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
E D L + G TAL+ A G + V+ L++ G N+N D +GWTPL A+ + V
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 427 VKLLLQSGADV 437
K L++SGA V
Sbjct: 119 CKFLVESGAAV 129
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L+ S+ G D+V I+ D + +++G TAL +A+C G+ ++V L++ G
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH-NAVCA----GHTEIVKFLVQFGVN 95
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581
V+ D +G TPL AA + VC+ L+E+ A
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 388 QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA 447
+G D VQ ++ + + + EG T L +A GH+ +VK L+Q G +VN +D G T
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA 481
L AA +++ V K L+ +GA V A
Sbjct: 107 LHCAASCNNVQ---------VCKFLVESGAAVFA 131
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
+ EG TAL + GH +IV ++++ ++N D+DG T L +A C +V
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-----NNVQVCK 120
Query: 542 ILLEKGAKV 550
L+E GA V
Sbjct: 121 FLVESGAAV 129
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
LL ++ EG D+ + ++ D + G T L A GH V L+ +G V+ D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
++G T L AA+ N+ V L++ G
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G T LH A GH E+ + L++ G V+ D+DG PL AA + + + +E A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 730 VNQKSHDGRTA 740
D +TA
Sbjct: 130 FAMTYSDMQTA 140
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L +S G +V+ ++ D + + G TAL A GH E+ VK L+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI---------VKFLVQ 91
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADI 512
G +VNAADS+G T L +A + + ++E A +
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
EG T L A G+ ++V L+ G+ + D+ GWTPLH AA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAA--------------DSDGWTPLHCAASCN 114
Query: 682 HEEVCRALLEAGAKV 696
+ +VC+ L+E+GA V
Sbjct: 115 NVQVCKFLVESGAAV 129
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
EG+T L A GH ++ + L++ + + D G TPL AAS + L+ GA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 616 V 616
V
Sbjct: 129 V 129
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 381 ALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCS 440
L AA +G V+ V+ LLEAGA+ N + G P++ G + V +LLL GA+ NC+
Sbjct: 15 GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEPNCA 73
Query: 441 DMGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
D T + AA G L+ +VL AGA ++ D+ GR + + GH
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLH---------RAGARLDVCDAWGRLPVDLAEEQGHR 124
Query: 500 DI 501
DI
Sbjct: 125 DI 126
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 474 AAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
+ G H+ S+ L +A G + V +LE AD N + GR + V +
Sbjct: 2 SPGIHMLGGSSDA--GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM----- 54
Query: 534 DGYAKVVSILLEKGAKVDHEDREGMT-PLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
G A+V +LL GA+ + D +T P+ AA EG D +L A D D GR
Sbjct: 55 -GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
Query: 593 PLWAAASMGH 602
P+ A GH
Sbjct: 114 PVDLAEEQGH 123
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 19/108 (17%)
Query: 627 LSVAAAQGNIDVVNQLLDRGM------------ILGCLAGGRQTGSLDEQH--RDNCG-- 670
L+ AAA+G ++ V QLL+ G I + G Q L H NC
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADP 75
Query: 671 ---WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
P+H AA EG + L AGA++D D GR P+ LA + GH
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
G + V+ LL AGA NA + GR I MG A + +L + A+ N D T
Sbjct: 23 GQVETVRQLLEAGADPNALNRFGRRP-IQVMMMGSAQVAELLLLHGAEPNCADPATLTRP 81
Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
A + +G+ + +L GA++D D G P+ +A +GHRD+ L
Sbjct: 82 VHDA----AREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
AA +GF+D + +L AGA ++ D G P+ A GH + + L + D
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 879 GSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRV 922
GSS G ++ AA G + VR LL GADP + GR +V
Sbjct: 10 GSSDAG--LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV 51
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
H +A + G+TAL + G + +L+ A N QD G + + +A G+
Sbjct: 34 HPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAART-----GFL 87
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
+ +L+E GA V+ D G P+ +A EGH V L E+D H D SG TPL A
Sbjct: 88 DTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPLELA 146
Query: 598 ASMGHASCVALL 609
G + + +L
Sbjct: 147 RQRGAQNLMDIL 158
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 359 LKTFLKSCEALDLELV---------DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC 409
L+ + A+ LEL+ D G + ++ AA GF+D +++L+E GA++N D
Sbjct: 46 LQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDS 105
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
G P+ A GHS+VV L +D++ D G T L A G
Sbjct: 106 TGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRG 150
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
G+TAL+ ++ G V LL GA N D+ G + + +A G D +
Sbjct: 42 GKTALQ----------VMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLK 91
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV 563
++E+ AD+N D+ G + ++ +G++ VVS L + + + H D G+TPL +
Sbjct: 92 VLVEHGADVNALDSTGSLPIHLAI-----REGHSSVVSFLAPE-SDLHHRDASGLTPLEL 145
Query: 564 AAFEGHRDVCEIL 576
A G +++ +IL
Sbjct: 146 ARQRGAQNLMDIL 158
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+++ G+TAL V A++ LL+ GA+ N D G +P+ A+ G +K+L++
Sbjct: 38 LNRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEH 96
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
GADVN D G + A GH V L P
Sbjct: 97 GADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCE---GWTPLRSASWGGHSAVVKLLLQSGADVN 438
L+ AA +G V V+ LL + H D G T L+ +G + ++LL Q GA N
Sbjct: 12 LSGAAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSPAVALELLKQ-GASPN 68
Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
D G + + AA G L+ +K+L+ GA VNA DS G + + GH
Sbjct: 69 VQDASGTSPVHDAARTGFLDT---------LKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 499 ADIVSSILEYDADINQQDNDGRTALSVS 526
+ +V S L ++D++ +D G T L ++
Sbjct: 120 SSVV-SFLAPESDLHHRDASGLTPLELA 146
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 571 DVCEI--LLENE-ADQDHIDKSGRTPLWAAASMGHASCVAL-LLFWGAYVDTIDAEGRTV 626
DV E+ LL E D +++ G+T L M + VAL LL GA + DA G +
Sbjct: 20 DVQEVRRLLHRELVHPDALNRFGKTALQVM--MFGSPAVALELLKQGASPNVQDASGTSP 77
Query: 627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVC 686
+ AA G +D + L++ G + L D+ G P+H A EGH V
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNAL--------------DSTGSLPIHLAIREGHSSVV 123
Query: 687 RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
+ L + + D G PL LA Q G +L+++
Sbjct: 124 -SFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYG-ADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
VG+++S AA G VR LLH P + G+ A +V L LLKQ A
Sbjct: 8 VGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASP 67
Query: 942 S-EYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
+ + +++A++G L++L ++ D+
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 100
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
AA+ G D +++L+ +GAD D G +A + GH +V+ L +D
Sbjct: 81 AARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 131
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
H +A + G+TAL + G + +L+ A N QD G + + +A G+
Sbjct: 36 HPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAART-----GFL 89
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
+ +L+E GA V+ D G P+ +A EGH V L E+D H D SG TPL A
Sbjct: 90 DTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPLELA 148
Query: 598 ASMGHASCVALL 609
G + + +L
Sbjct: 149 RQRGAQNLMDIL 160
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 359 LKTFLKSCEALDLELV---------DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC 409
L+ + A+ LEL+ D G + ++ AA GF+D +++L+E GA++N D
Sbjct: 48 LQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDS 107
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
G P+ A GHS+VV L +D++ D G T L A G
Sbjct: 108 TGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRG 152
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
G+TAL+ ++ G V LL GA N D+ G + + +A G D +
Sbjct: 44 GKTALQ----------VMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLK 93
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV 563
++E+ AD+N D+ G + ++ +G++ VVS L + + + H D G+TPL +
Sbjct: 94 VLVEHGADVNALDSTGSLPIHLAI-----REGHSSVVSFLAPE-SDLHHRDASGLTPLEL 147
Query: 564 AAFEGHRDVCEIL 576
A G +++ +IL
Sbjct: 148 ARQRGAQNLMDIL 160
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+++ G+TAL V A++ LL+ GA+ N D G +P+ A+ G +K+L++
Sbjct: 40 LNRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEH 98
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
GADVN D G + A GH V L P
Sbjct: 99 GADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCE---GWTPLRSASWGGHSAVVKLLLQSGADVN 438
L+ AA +G V V+ LL + H D G T L+ +G + ++LL Q GA N
Sbjct: 14 LSGAAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSPAVALELLKQ-GASPN 70
Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
D G + + AA G L+ +K+L+ GA VNA DS G + + GH
Sbjct: 71 VQDASGTSPVHDAARTGFLDT---------LKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 499 ADIVSSILEYDADINQQDNDGRTALSVS 526
+ +V S L ++D++ +D G T L ++
Sbjct: 122 SSVV-SFLAPESDLHHRDASGLTPLELA 148
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 571 DVCEI--LLENE-ADQDHIDKSGRTPLWAAASMGHASCVAL-LLFWGAYVDTIDAEGRTV 626
DV E+ LL E D +++ G+T L M + VAL LL GA + DA G +
Sbjct: 22 DVQEVRRLLHRELVHPDALNRFGKTALQVM--MFGSPAVALELLKQGASPNVQDASGTSP 79
Query: 627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVC 686
+ AA G +D + L++ G + L D+ G P+H A EGH V
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNAL--------------DSTGSLPIHLAIREGHSSVV 125
Query: 687 RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
+ L + + D G PL LA Q G +L+++
Sbjct: 126 -SFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYG-ADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
VG+++S AA G VR LLH P + G+ A +V L LLKQ A
Sbjct: 10 VGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASP 69
Query: 942 S-EYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
+ + +++A++G L++L ++ D+
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 102
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
AA+ G D +++L+ +GAD D G +A + GH +V+ L +D
Sbjct: 83 AARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 133
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G+ L+ AA G ++ ++ LL GA+IN D TPL SA + GH + VKLLL GAD
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 438 NCSDMGGRTALRA 450
G TA A
Sbjct: 100 TVKGPDGLTAFEA 112
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
VK + G DVN + GGR L AA G LE+ ++ LL GA +NA D
Sbjct: 23 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI---------LEFLLLKGADINAPDKHH 73
Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
T L+++ Y GH V +L AD + DG TA +
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
G D V + D+N+ GR L +A C G +++ LL KGA ++ D+
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-----GQLEILEFLLLKGADINAPDKH 72
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWA 596
+TPLL A +EGH ++LL AD+ G T A
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
A G +D V+ + G ++N T G PL A+ G +++ LL GAD+N D
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
T L +A + GH+ VKLLL+ GA +G TA A+
Sbjct: 74 ITPLLSAVYEGHVS---------CVKLLLSKGADKTVKGPDGLTAFEAT 113
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 39/88 (44%)
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
KG V+ G PL AA G ++ E LL AD + DK TPL +A GH SC
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
V LLL GA +G T Q
Sbjct: 89 VKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G PLHYAA G E+ LL GA ++ D PL+ A +GH V++ L + A+
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GAD 98
Query: 730 VNQKSHDGRTALRVNMKNVTK 750
K DG TA K
Sbjct: 99 KTVKGPDGLTAFEATDNQAIK 119
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
G L VK +A G VN GR L +A G +I+ +L ADIN D T L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE 567
+SA+ +G+ V +LL KGA + +G+T AFE
Sbjct: 78 -LSAV----YEGHVSCVKLLLSKGADKTVKGPDGLT-----AFE 111
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
E + + +++ G+TAL V A++ LL+ GA+ N D G +P+ A+ G
Sbjct: 25 ELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGFLDT 83
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
+K+L++ GADVN D G + A GH V LAA + ++ D+ G
Sbjct: 84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS----------FLAAESDLHRRDARG 133
Query: 487 RTALIASAYMGHADIV 502
T L + G D+V
Sbjct: 134 LTPLELALQRGAQDLV 149
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 359 LKTFLKSCEALDLELV---------DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC 409
L+ + A+ LEL+ D G + ++ AA GF+D +++L+E GA++N D
Sbjct: 40 LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
G P+ A GH+AVV L + +D++ D G T L A G ++ +L
Sbjct: 100 TGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 627 LSVAAAQGNIDVVNQLLDRG-----------------MILGCLAGG----RQTGSLDEQH 665
LS AAA+G++ V +LL R M+ G A +Q S + Q
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 64
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
D G +P+H AA G + + L+E GA V+ D G P+ LA Q+GH +V
Sbjct: 65 -DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 122
Query: 726 YEANVNQKSHDGRTALRVNMK 746
E++++++ G T L + ++
Sbjct: 123 -ESDLHRRDARGLTPLELALQ 142
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCE---GWTPLRSASWGGHSAVVKLLLQSGADVN 438
L+ AA +G V V+ LL + H D G T L+ +G +A+ LL+ GA N
Sbjct: 6 LSGAAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPN 62
Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
D G + + AA G L+ +K+L+ GA VN D G + + GH
Sbjct: 63 VQDTSGTSPVHDAARTGFLDT---------LKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 499 ADIVSSILEYDADINQQDNDGRTALSVS 526
+V S L ++D++++D G T L ++
Sbjct: 114 TAVV-SFLAAESDLHRRDARGLTPLELA 140
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
AA+ G D +++L+ +GAD D G +A + GH V+ L +D
Sbjct: 75 AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
E + + +++ G+TAL V A++ LL+ GA+ N D G +P+ A+ G
Sbjct: 31 ELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGFLDT 89
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
+K+L++ GADVN D G + A GH V LAA + ++ D+ G
Sbjct: 90 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS----------FLAAESDLHRRDARG 139
Query: 487 RTALIASAYMGHADIV 502
T L + G D+V
Sbjct: 140 LTPLELALQRGAQDLV 155
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 359 LKTFLKSCEALDLELV---------DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC 409
L+ + A+ LEL+ D G + ++ AA GF+D +++L+E GA++N D
Sbjct: 46 LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 105
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
G P+ A GH+AVV L + +D++ D G T L A G ++ +L
Sbjct: 106 TGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 627 LSVAAAQGNIDVVNQLLDRG-----------------MILGCLAGG----RQTGSLDEQH 665
LS AAA+G++ V +LL R M+ G A +Q S + Q
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 70
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
D G +P+H AA G + + L+E GA V+ D G P+ LA Q+GH +V
Sbjct: 71 -DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 128
Query: 726 YEANVNQKSHDGRTALRVNMK 746
E++++++ G T L + ++
Sbjct: 129 -ESDLHRRDARGLTPLELALQ 148
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCE---GWTPLRSASWGGHSAVVKLLLQSGADVN 438
L+ AA +G V V+ LL + H D G T L+ +G +A+ LL+ GA N
Sbjct: 12 LSGAAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPN 68
Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
D G + + AA G L+ +K+L+ GA VN D G + + GH
Sbjct: 69 VQDTSGTSPVHDAARTGFLDT---------LKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 499 ADIVSSILEYDADINQQDNDGRTALSVS 526
+V S L ++D++++D G T L ++
Sbjct: 120 TAVV-SFLAAESDLHRRDARGLTPLELA 146
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
AA+ G D +++L+ +GAD D G +A + GH V+ L +D
Sbjct: 81 AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 131
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKS-GRTPLWAAASMGHASCVALLLFWGAYVD 617
+PLL+AA E LL+ E + H + G T L AA + A++L A
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEA-AMVLMEAAPEL 63
Query: 618 TIDA------EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC-- 669
+ EG+T L +A N+++V LL RG R TGS+ N
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARG----ASVSARATGSVFHYRPHNLIY 119
Query: 670 -GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL-ILAAQDGHYHLVEMF 722
G PL +AA G EE+ R L+E GA + D+ G L IL Q +M+
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 353 ENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC--- 409
EN++ L LK E ++ G+TAL++AA ++A +L+EA +
Sbjct: 13 ENDVQALSKLLK-FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE 71
Query: 410 --EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA---AAWGGH-LEVTIVL 463
EG T L A + +V+ LL GA V+ G R +G H L +
Sbjct: 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTAL 490
G +V+LL+ GA + A DS G T L
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKH---GQTALNVAAHQGFVDAVQIL 397
+ ++ LH +N+ +++ L E + GQTAL++A V+ V+ L
Sbjct: 35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94
Query: 398 LEAGANINHTDCE-------------GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
L GA+++ G PL A+ G +V+LL++ GAD+ D G
Sbjct: 95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Query: 445 RTAL 448
T L
Sbjct: 155 NTVL 158
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 846 VDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHY 905
V+L + +S AT F H I G +S AA G E+ VRLL+ +
Sbjct: 88 VNLVRALLARGASVSARATGSVFHYRPHNLIYYGE----HPLSFAACVGSEEIVRLLIEH 143
Query: 906 GADPKHSDHCGRNAFRV 922
GAD + D G +
Sbjct: 144 GADIRAQDSLGNTVLHI 160
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSAVV 427
L LE + G T L+VA + V++L +AGA++N + G TPL A ++V+
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 428 KLLLQSGADVNCSDMGGRTALRAA 451
+LLL++GAD GGRT L +A
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSA 232
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 36/244 (14%)
Query: 374 VDKHGQTALNVAA---HQGFVDAVQILLEAGANINHTDCE---GWTPLRSASWGGHSAVV 427
V + G TAL++A H+ F+D LL A + D + G T L A+ G ++ V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLD---FLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 428 KLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA----- 482
+ L +GA V ++ GG TAL A V C LL +H A
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACR--------VRAHTCACVLLQPRPSHPRDASDTYL 113
Query: 483 ----DSEGRTALIASAYMGHADIVSSILEYDAD----INQQDNDGRTALSVSALCVPSSD 534
D T+ +A + + D D + ++ DG T L V+ + D
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI---HKD 170
Query: 535 GYAKVVSILLEKGAKVDH-EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
A++V +L + GA ++ E G TPL +A V E+LL+ AD GRTP
Sbjct: 171 --AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228
Query: 594 LWAA 597
L +A
Sbjct: 229 LGSA 232
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 38/223 (17%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS---GRTPLWAAASMGHASCVALLLFW 612
+G T L +A H + LL A +++D G+T L AA +G AS V L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 613 GAYVDTIDAEGRTVLSVAA---------------------AQGNIDVVNQLLDRGMILGC 651
GA V + G T L +A A +Q
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 652 LAGGRQTGSLDEQHRDNCGW------------TPLHYAAIEGHEEVCRALLEAGAKVDQV 699
A Q +E+ + W TPLH A I E+ R L +AGA +++
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 700 DND-GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ GR PL LA + ++E+ L + A+ + + GRT L
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPL 229
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 92/228 (40%), Gaps = 44/228 (19%)
Query: 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANI 404
+V+H+ E ++ L F E LDL+ + GQTAL++AA G V+ L AGA +
Sbjct: 16 AVIHQ--HEPFLDFLLGFSAGHEYLDLQ--NDLGQTALHLAAILGEASTVEKLYAAGAGV 71
Query: 405 NHTDCEGWTPLRSASWGGHSAVVKLLLQS-------GADV------NCS----------- 440
+ G T L A +LLQ +D +C+
Sbjct: 72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131
Query: 441 ------------DMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADSE- 485
D R L A + GH L V ++ +V+LL AGA +N +
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
GRT L + A ++ +L+ AD + GRT L SAL P+
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG-SALLRPNP 238
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSAVV 427
L LE + G T L+VA + V++L +AGA++N + G TPL A ++V+
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 428 KLLLQSGADVNCSDMGGRTALRAA 451
+LLL++GAD GGRT L +A
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSA 232
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 36/244 (14%)
Query: 374 VDKHGQTALNVAA---HQGFVDAVQILLEAGANINHTDCE---GWTPLRSASWGGHSAVV 427
V + G TAL++A H+ F+D LL A + D + G T L A+ G ++ V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLD---FLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 428 KLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA----- 482
+ L +GA V ++ GG TAL A V C LL +H A
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACR--------VRAHTCACVLLQPRPSHPRDASDTYL 113
Query: 483 ----DSEGRTALIASAYMGHADIVSSILEYDAD----INQQDNDGRTALSVSALCVPSSD 534
D T+ +A + + D D + ++ DG T L V+ + D
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI---HKD 170
Query: 535 GYAKVVSILLEKGAKVDH-EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
A++V +L + GA ++ E G TPL +A V E+LL+ AD GRTP
Sbjct: 171 --AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228
Query: 594 LWAA 597
L +A
Sbjct: 229 LGSA 232
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 38/223 (17%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS---GRTPLWAAASMGHASCVALLLFW 612
+G T L +A H + LL A +++D G+T L AA +G AS V L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 613 GAYVDTIDAEGRTVLSVAA---------------------AQGNIDVVNQLLDRGMILGC 651
GA V + G T L +A A +Q
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 652 LAGGRQTGSLDEQHRDNCGW------------TPLHYAAIEGHEEVCRALLEAGAKVDQV 699
A Q +E+ + W TPLH A I E+ R L +AGA +++
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 700 DND-GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ GR PL LA + ++E+ L + A+ + + GRT L
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPL 229
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 92/228 (40%), Gaps = 44/228 (19%)
Query: 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANI 404
+V+H+ E ++ L F E LDL+ + GQTAL++AA G V+ L AGA +
Sbjct: 16 AVIHQ--HEPFLDFLLGFSAGHEYLDLQ--NDLGQTALHLAAILGEASTVEKLYAAGAGV 71
Query: 405 NHTDCEGWTPLRSASWGGHSAVVKLLLQS-------GADV------NCS----------- 440
+ G T L A +LLQ +D +C+
Sbjct: 72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131
Query: 441 ------------DMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADSE- 485
D R L A + GH L V ++ +V+LL AGA +N +
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
GRT L + A ++ +L+ AD + GRT L SAL P+
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG-SALLRPNP 238
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
+G T LI +A + ++ ++ AD+N D+ G++AL +A +LL
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-----NVDAAVVLL 68
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
+ GA D ++ + TPL +AA EG + ++LL++ A++D D R P A H
Sbjct: 69 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 128
Query: 605 CVALL 609
V LL
Sbjct: 129 IVRLL 133
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
D+ G + LH+AA + + LL+ GA D +N PL LAA++G Y ++ L+ +
Sbjct: 45 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 104
Query: 727 EANVNQKSHDGR 738
AN + H R
Sbjct: 105 -ANRDITDHMDR 115
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
G TPL AA + + L+ A V+ +D G++ L AAA N+D LL G
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA- 72
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
++ ++N TPL AA EG E + LL+ A D D+ R P
Sbjct: 73 -------------NKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 119
Query: 709 LAAQDGHYHLVEMFLE 724
+A + H+ +V + E
Sbjct: 120 IAQERMHHDIVRLLDE 135
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
L+ + A VNA D G++AL +A + + D +L+ A+ + Q+N T L ++A
Sbjct: 34 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAA---- 89
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
+G + +LL+ A D D P +A H D+ +L E
Sbjct: 90 -REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 135
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL-EAGANIN 405
LH+ N++ L+ L + + + +DK G TAL A H G D V+ L + +N
Sbjct: 77 LHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 406 HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451
+ G T L +A+W G++ +V+LLL GA + ++ + A A
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXA 180
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 414 PLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLL 473
PL A+ G+ + ++ L + VN D G TAL A GGH ++ V L
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI--------VEXLFT 127
Query: 474 AAGAHVNAADSEGRTALIASAYMGHADIVSSIL 506
+N + G TAL A+A+ G+ADIV +L
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 484 SEGRTALIASAYMG-HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI 542
S+GRT LI S Y+ A+ + + L A R LS C+ + G
Sbjct: 54 SKGRTGLIPSNYVAEQAESIDNPLHEAAK--------RGNLSWLRECLDNRVG------- 98
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL-ENEADQDHIDKSGRTPLWAAASMG 601
V+ D+ G T L A GH+D+ E L + + + +K G T L AAA G
Sbjct: 99 -------VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKG 151
Query: 602 HASCVALLLFWGAYVDTIDAEGRTVLSVA 630
+A V LLL GA D + E + A
Sbjct: 152 YADIVQLLLAKGARTDLRNIEKKLAFDXA 180
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
PLH AA G+ R L+ V+ +D G L A GH +VE Q +NQ
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 733 KSHDGRTAL 741
++ G TAL
Sbjct: 136 QNKLGDTAL 144
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 593 PLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCL 652
PL AA G+ S + L V+ +D G T L A G+ D+V L + I
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNI---- 131
Query: 653 AGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD 697
L++Q++ G T LH AA +G+ ++ + LL GA+ D
Sbjct: 132 -------ELNQQNK--LGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
Y+ DI+ D + + + GRT L +PS+ + E+ +D+
Sbjct: 32 YIEEGDIIYITDXSDTNWWKGTSKGRTGL------IPSN--------YVAEQAESIDN-- 75
Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW-G 613
PL AA G+ L+N + +DK+G T L+ A GH V L
Sbjct: 76 -----PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPN 130
Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
++ + G T L AA +G D+V LL +G
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 328 CSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAH 387
C D V + D + L+ C + ++++ ++L +K G TAL+ AA
Sbjct: 92 CLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEXLFTQPN-IELNQQNKLGDTALHAAAW 149
Query: 388 QGFVDAVQILLEAGANINHTDCE 410
+G+ D VQ+LL GA + + E
Sbjct: 150 KGYADIVQLLLAKGARTDLRNIE 172
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
E D ++ G TAL+ A V L+ AGAN+N D GWTPL A+ + +
Sbjct: 43 EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVI 102
Query: 427 VKLLLQSGADV 437
L+Q GA +
Sbjct: 103 CMALVQHGAAI 113
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G VV+ ++ D + + G TAL A G + + V L+
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI---------VDFLIT 75
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-NDGRTALSVSALCVPSS 533
AGA+VN+ DS G T L +A I +++++ A I +DG TA C P
Sbjct: 76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK---CDPYR 132
Query: 534 DGYAKVVSILLE 545
+GYA + L +
Sbjct: 133 EGYADCATYLAD 144
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
AA G ++ VQ ++ + + + EG T L +A G + ++V L+ +GA+VN D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 445 RTALRAAA 452
T L AA
Sbjct: 88 WTPLHCAA 95
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
EG T L A N +V+ L+ T + D+ GWTPLH AA
Sbjct: 53 EGITALHNAICGANYSIVDFLI--------------TAGANVNSPDSHGWTPLHCAASCN 98
Query: 682 HEEVCRALLEAGAKV 696
+C AL++ GA +
Sbjct: 99 DTVICMALVQHGAAI 113
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 359 LKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSA 418
LK+FL S + D HG +A A V V LL AGA N + E PL A
Sbjct: 15 LKSFLSSKDTFK---ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQA 69
Query: 419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
+ + +VK+LL SG D + D G TAL A G+ +
Sbjct: 70 ATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQ 109
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 22/151 (14%)
Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
SA +D ++V LL GA + + E PL AA + +ILL + D
Sbjct: 33 SASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGLDDSQ 90
Query: 586 IDKSGRTPLWAAASMGHASCVAL-------LLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
D G T L+ A G+ V L L F+G +T A ++ +
Sbjct: 91 FDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGK------TGWKTSFYHAVXLNDVSI 144
Query: 639 VNQLL-------DRGMILGCLAGGRQTGSLD 662
V+ L D ++L C+ + G +D
Sbjct: 145 VSYFLSEIPSTFDLAILLSCIHITIKNGHVD 175
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 113/271 (41%), Gaps = 53/271 (19%)
Query: 335 RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEAL-DLELVDKH-GQTALNVAA---HQG 389
R ++FD+ QS +L + LL +S + L D E D G+T L A H G
Sbjct: 14 RRSIFDAVAQSNCQELES-----LLPFLQRSKKRLTDSEFKDPETGKTCLLKAXLNLHNG 68
Query: 390 FVDAVQILLEAG---------ANINHTDC--EGWTPLRSASWGGHSAVVKLLLQSGADVN 438
D + +LL+ N ++TD +G T L A + +V LL+++GADV
Sbjct: 69 QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQ 128
Query: 439 CS---DMGGRTALRAAAWGGHLEVTIV--LGPLCVVKLLLAAG---AHVNAADSEGRTAL 490
+ D +T R + G L +++ L +VK LL A ++A DS G T L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188
Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
A + AD N DN V S ++ L K+
Sbjct: 189 --HALVEVAD------------NTVDNTK---------FVTSXYNEILILGAKLHPTLKL 225
Query: 551 DH-EDREGMTPLLVAAFEGHRDVCEILLENE 580
+ +R+G+TPL +AA G V +L+ E
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQRE 256
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 656 RQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
+ +G+LD+Q G T LHY + + E + LL A ++ + G PL +A + H
Sbjct: 193 QNSGNLDKQTGK--GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250
Query: 716 YHLVEMFLEQYEANVNQKSH 735
H E+ + N H
Sbjct: 251 EHCEELLTQALSGRFNSHVH 270
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
+V L++ +D + +G T L + + ++LL +A + ++SG TPL A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 599 SMGHASCVALL 609
+ H C LL
Sbjct: 247 RLKHEHCEELL 257
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 112/279 (40%), Gaps = 29/279 (10%)
Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL--CVPSSDGYAKV 539
+D E + +A G D V ++E Q+ G TAL ++ CV ++ A V
Sbjct: 16 SDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 540 VSI-LLEKGAKVDH-EDREGMTPLLVAAFEGHRD---VCEILLENEADQDHIDK------ 588
+ L G K H T L+VA EG ++ E LL NE D+ +++
Sbjct: 76 GEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLL-NECDEREVNEIGSHVK 134
Query: 589 --SGRTPLWAAASMG--HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
G+T L +G + + +L+ GA D T L A N + ++ D
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXD 194
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
SL + + G + LH+A + E+V +E G V+ DN+
Sbjct: 195 TVP---------SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHT 245
Query: 705 APLILAAQDGHYHLVEMFLEQYEANVNQKS--HDGRTAL 741
PL L+ + L + L++ + + Q H+G T L
Sbjct: 246 VPLYLSVRAAXVLLTKELLQKTDVFLIQACPYHNGTTVL 284
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 885 EKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSG 927
EKI +AA++G D VR L+ G P + G A +A K G
Sbjct: 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 659 GSLDEQ-HRDNCGWT-----PLHYAAIEGHEEVCRALLE-AGAKVDQV 699
GSL+E H DNCG+ L A+ EEVCR +LE AG K ++V
Sbjct: 183 GSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEV 230
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 204 TVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLN 263
T+ + I L FH + LDD K HV+R L+ + + + +N T E+L
Sbjct: 23 TIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILI 82
Query: 264 QLHIKSNGCFLYLERVLDGISNG 286
L I+S V D I NG
Sbjct: 83 NLRIRS--------IVSDNIHNG 97
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 204 TVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLN 263
T+ + I L FH + LDD K HV+R L+ + + + +N T E+L
Sbjct: 18 TIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILI 77
Query: 264 QLHIKSNGCFLYLERVLDGISNG 286
L I+S V D I NG
Sbjct: 78 NLRIRS--------IVSDNIHNG 92
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 659 GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHL 718
G LD + D G T LHYAA+ + + LL+ A V V+ G L +A + H+
Sbjct: 198 GHLDAKAAD--GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKE 254
Query: 719 VEMFLEQYEANV 730
E LEQ +A
Sbjct: 255 CEELLEQAQAGT 266
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 456 HLEVTIV-LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQ 514
HL V + L +V ++ G H++A ++G TAL +A D + +L+ A +
Sbjct: 176 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 235
Query: 515 QDNDGRTALSVS 526
+ G TAL ++
Sbjct: 236 VNEAGETALDIA 247
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 659 GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHL 718
G LD + D G T LHYAA+ + + LL+ A V V+ G L +A + H+
Sbjct: 217 GHLDAKAAD--GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKE 273
Query: 719 VEMFLEQYEANV 730
E LEQ +A
Sbjct: 274 CEELLEQAQAGT 285
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 456 HLEVTIV-LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQ 514
HL V + L +V ++ G H++A ++G TAL +A D + +L+ A +
Sbjct: 195 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 254
Query: 515 QDNDGRTALSVS 526
+ G TAL ++
Sbjct: 255 VNEAGETALDIA 266
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDAD 511
+NA DS G T L +A +G+ IV ++L+Y AD
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRG 646
D+ G T L++AA GNI +V+ LLD G
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYG 306
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 710 AAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQP 760
AA +GH L + +E+ AN+N+ RTA+R N +F++ ++ P
Sbjct: 51 AALEGHAELADKSVEELVANLNEVPEAIRTAVRNNGGGHANHTFFWTILSP 101
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 453 WGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADSE-------------GRTALIASAYMG 497
+ GH L + I L VKLL+ GA+V+A G L +A
Sbjct: 93 YRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTK 152
Query: 498 HADIVSSILE---YDADINQQDNDGRTAL-SVSALCVPSSDGYAKVVSI---LLEKGAKV 550
D+VS +LE A + D+ G T L ++ + S++ A V S LL+ GA++
Sbjct: 153 QWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARL 212
Query: 551 -------DHEDREGMTPLLVAAFEGHRDVCEILLENE 580
D + + +TPL +AA EG ++ +L+ E
Sbjct: 213 CPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQRE 249
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA---SAYMGHADIVSSILEY 508
AW G+++ L V + H ++ + G +A+ A + MG AD+V++ILE+
Sbjct: 51 AWNGYMKYAFPHDELTPV-----SNGHADSRNGWGASAVDALSTAVIMGKADVVNAILEH 105
Query: 509 DADIN 513
ADI+
Sbjct: 106 VADID 110
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA---SAYMGHADIVSSILEY 508
AW G+++ L V + H ++ + G +A+ A + MG AD+V++ILE+
Sbjct: 16 AWNGYMKYAFPHDELTPV-----SNGHADSRNGWGASAVDALSTAVIMGKADVVNAILEH 70
Query: 509 DADIN 513
ADI+
Sbjct: 71 VADID 75
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 26/173 (15%)
Query: 298 GTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDT--PVSRITMFDSKNQSVLHKLCAENN 355
G+ +GL LS LL+ K+ L +E + T P + + + +N ++ L
Sbjct: 16 GSPDGLEGLLSF-LLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK 74
Query: 356 INLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGW--- 412
++ F+ S V GQTAL++A + V++L+E GA++ H G
Sbjct: 75 TGNMREFINS----PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQ 129
Query: 413 ------------TPLRSASWGGHSAVVKLLLQSG---ADVNCSDMGGRTALRA 450
PL A+ +V L ++G AD+ D G T L A
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 27/163 (16%)
Query: 507 EYDADINQQDNDGRTALSVSALCVPSS---DGYAKVVSILLEKGAK--VDHEDR--EGMT 559
+++ + Q N + + A VPSS D YA++ I + GAK VD E E +
Sbjct: 112 QFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQIAQITAQTGAKLVVDAEKELAESVL 171
Query: 560 PLLVAAFEGHRDVCEILLENEADQD-HIDKSGRTPLWAAASMGHASCVALLLFWGA-YVD 617
P + ++D E++ + D + K GR G S + L GA Y+D
Sbjct: 172 PYHPLFIKPNKDELEVMFNTTVNSDADVIKYGRL----LVDKGAQSVIVSLGGDGAIYID 227
Query: 618 ------TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG 654
++ +G+ V +V + + GM+ G +G
Sbjct: 228 KEISIKAVNPQGKVVNTVGSGDSTV--------AGMVAGIASG 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,546,006
Number of Sequences: 62578
Number of extensions: 1029761
Number of successful extensions: 4456
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2421
Number of HSP's gapped (non-prelim): 1144
length of query: 978
length of database: 14,973,337
effective HSP length: 108
effective length of query: 870
effective length of database: 8,214,913
effective search space: 7146974310
effective search space used: 7146974310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)