Query psy9384
Match_columns 978
No_of_seqs 469 out of 5223
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 17:44:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4177|consensus 100.0 2E-62 4.3E-67 558.2 29.4 566 341-972 52-631 (1143)
2 KOG4177|consensus 100.0 4.8E-60 1E-64 538.7 27.0 557 334-956 78-653 (1143)
3 PHA02876 ankyrin repeat protei 100.0 1.2E-49 2.5E-54 471.5 44.8 481 347-944 6-502 (682)
4 PHA02876 ankyrin repeat protei 100.0 7.6E-49 1.6E-53 464.6 42.6 477 382-974 6-501 (682)
5 PHA02917 ankyrin-like protein; 100.0 4.8E-48 1E-52 441.2 42.5 453 356-945 12-515 (661)
6 PHA02917 ankyrin-like protein; 100.0 1.2E-46 2.7E-51 429.7 39.4 445 500-976 13-515 (661)
7 PHA02946 ankyin-like protein; 100.0 1.2E-44 2.7E-49 399.2 41.7 357 345-762 11-375 (446)
8 PHA02730 ankyrin-like protein; 100.0 4E-44 8.6E-49 394.7 38.0 382 356-769 20-521 (672)
9 PHA02946 ankyin-like protein; 100.0 1.1E-43 2.3E-48 391.8 38.6 361 490-942 13-381 (446)
10 PHA02716 CPXV016; CPX019; EVM0 100.0 8.2E-43 1.8E-47 392.7 39.2 406 495-972 151-592 (764)
11 PHA02716 CPXV016; CPX019; EVM0 100.0 1.3E-42 2.8E-47 391.2 40.3 428 294-769 104-590 (764)
12 PHA02730 ankyrin-like protein; 100.0 1.5E-42 3.2E-47 382.2 38.1 364 338-731 36-525 (672)
13 KOG0510|consensus 100.0 4.6E-42 9.9E-47 365.8 28.8 338 372-743 55-416 (929)
14 KOG0510|consensus 100.0 6E-41 1.3E-45 357.3 28.5 387 371-856 24-416 (929)
15 PHA02874 ankyrin repeat protei 100.0 4.1E-39 8.8E-44 360.8 39.1 335 346-721 4-341 (434)
16 PHA02874 ankyrin repeat protei 100.0 1.2E-38 2.5E-43 357.2 38.3 324 381-745 4-331 (434)
17 PHA03095 ankyrin-like protein; 100.0 1.2E-37 2.5E-42 356.0 29.1 287 350-697 21-317 (471)
18 PHA03095 ankyrin-like protein; 100.0 3.6E-37 7.9E-42 351.9 30.9 273 334-620 38-320 (471)
19 PHA03100 ankyrin repeat protei 100.0 4.5E-36 9.7E-41 343.5 30.6 287 355-698 14-311 (480)
20 PHA03100 ankyrin repeat protei 100.0 4.5E-36 9.7E-41 343.5 30.6 290 389-734 13-313 (480)
21 PHA02792 ankyrin-like protein; 100.0 6.7E-36 1.4E-40 325.7 28.0 243 502-769 21-277 (631)
22 PHA02878 ankyrin repeat protei 100.0 5.6E-35 1.2E-39 331.3 32.2 304 377-745 36-347 (477)
23 PHA02792 ankyrin-like protein; 100.0 9.2E-35 2E-39 316.8 29.6 385 471-944 56-481 (631)
24 KOG0508|consensus 100.0 9.8E-35 2.1E-39 290.2 26.4 216 348-578 9-236 (615)
25 PHA02878 ankyrin repeat protei 100.0 2.5E-34 5.5E-39 326.0 32.1 286 340-645 34-323 (477)
26 PHA02989 ankyrin repeat protei 100.0 8.5E-34 1.8E-38 322.4 32.8 288 388-725 13-311 (494)
27 PHA02989 ankyrin repeat protei 100.0 1.2E-33 2.6E-38 321.1 32.7 279 422-764 14-311 (494)
28 KOG0508|consensus 100.0 4.2E-33 9.2E-38 278.5 25.8 213 384-611 10-236 (615)
29 PHA02791 ankyrin-like protein; 100.0 5.5E-33 1.2E-37 283.5 26.2 235 353-615 9-245 (284)
30 PHA02791 ankyrin-like protein; 100.0 1.5E-32 3.2E-37 280.3 26.1 233 388-647 9-244 (284)
31 KOG4412|consensus 100.0 4.2E-33 9E-38 242.5 14.5 206 344-565 4-212 (226)
32 PHA02798 ankyrin-like protein; 100.0 1.1E-31 2.4E-36 304.7 28.1 282 390-733 17-320 (489)
33 PHA02875 ankyrin repeat protei 100.0 1.9E-31 4.2E-36 298.0 29.6 251 379-643 3-261 (413)
34 PHA02798 ankyrin-like protein; 100.0 8.3E-32 1.8E-36 305.7 26.4 289 354-697 16-318 (489)
35 PHA02875 ankyrin repeat protei 100.0 5.1E-31 1.1E-35 294.6 29.6 252 343-610 2-261 (413)
36 KOG4412|consensus 100.0 3.2E-31 6.9E-36 230.8 17.8 202 487-708 4-209 (226)
37 KOG4369|consensus 100.0 1E-30 2.2E-35 284.5 13.7 316 623-976 757-1089(2131)
38 KOG0509|consensus 100.0 5.8E-28 1.3E-32 254.4 18.1 209 344-567 45-255 (600)
39 KOG0509|consensus 100.0 1.1E-27 2.4E-32 252.3 17.5 209 378-600 44-255 (600)
40 KOG4369|consensus 99.9 7.4E-28 1.6E-32 262.4 8.4 322 376-725 755-1082(2131)
41 PHA02795 ankyrin-like protein; 99.9 3.8E-25 8.3E-30 233.3 20.6 227 394-646 65-313 (437)
42 PHA02795 ankyrin-like protein; 99.9 6.8E-25 1.5E-29 231.4 22.0 239 539-807 64-313 (437)
43 PHA02859 ankyrin repeat protei 99.9 2.9E-24 6.2E-29 212.5 19.8 172 342-527 20-200 (209)
44 PHA02859 ankyrin repeat protei 99.9 3.7E-24 8E-29 211.7 19.6 178 375-568 18-203 (209)
45 KOG0502|consensus 99.9 2.1E-24 4.5E-29 194.4 7.9 261 346-627 34-295 (296)
46 KOG0502|consensus 99.9 4.3E-24 9.2E-29 192.4 8.8 236 341-594 60-295 (296)
47 KOG0507|consensus 99.9 6.3E-23 1.4E-27 218.6 15.2 249 345-633 5-264 (854)
48 KOG0507|consensus 99.9 1.9E-22 4.1E-27 214.9 14.1 263 626-935 6-276 (854)
49 PLN03192 Voltage-dependent pot 99.9 1.5E-20 3.3E-25 225.6 20.4 196 353-568 504-700 (823)
50 PLN03192 Voltage-dependent pot 99.8 6.1E-20 1.3E-24 220.4 23.3 190 537-745 507-697 (823)
51 TIGR00870 trp transient-recept 99.8 1.3E-20 2.9E-25 225.4 17.4 244 342-598 16-298 (743)
52 TIGR00870 trp transient-recept 99.8 1.5E-20 3.2E-25 225.1 16.0 235 377-645 16-279 (743)
53 KOG0514|consensus 99.8 1.2E-20 2.5E-25 183.9 9.6 164 796-969 253-429 (452)
54 KOG0514|consensus 99.8 9.8E-21 2.1E-25 184.3 8.9 168 696-938 261-429 (452)
55 KOG0505|consensus 99.8 7.7E-20 1.7E-24 188.8 15.1 227 674-956 44-273 (527)
56 KOG0505|consensus 99.8 6.4E-20 1.4E-24 189.4 11.2 230 346-632 43-273 (527)
57 PHA02743 Viral ankyrin protein 99.8 3.5E-19 7.5E-24 169.2 13.8 145 367-520 9-162 (166)
58 PHA02743 Viral ankyrin protein 99.8 2.8E-18 6E-23 163.0 14.8 145 579-738 9-162 (166)
59 KOG0512|consensus 99.8 4.2E-18 9E-23 148.0 13.3 146 344-498 64-210 (228)
60 PHA02741 hypothetical protein; 99.8 5.5E-18 1.2E-22 162.1 13.7 131 372-511 15-157 (169)
61 PHA02741 hypothetical protein; 99.7 1.4E-17 3.1E-22 159.3 13.8 133 337-478 15-157 (169)
62 PHA02884 ankyrin repeat protei 99.7 3.3E-17 7.2E-22 167.1 15.9 154 373-548 27-186 (300)
63 PHA02884 ankyrin repeat protei 99.7 4.6E-17 9.9E-22 166.0 16.8 153 339-510 28-186 (300)
64 PHA02736 Viral ankyrin protein 99.7 2.9E-17 6.3E-22 155.1 10.1 95 408-511 52-151 (154)
65 PHA02736 Viral ankyrin protein 99.7 5.9E-17 1.3E-21 153.0 10.7 135 337-480 11-153 (154)
66 KOG0512|consensus 99.7 1.8E-16 3.8E-21 138.0 12.2 139 593-745 66-206 (228)
67 KOG0195|consensus 99.7 3.6E-17 7.8E-22 154.1 6.1 154 351-514 8-161 (448)
68 PF12796 Ank_2: Ankyrin repeat 99.6 4.4E-15 9.5E-20 125.4 11.5 89 347-441 1-89 (89)
69 PF12796 Ank_2: Ankyrin repeat 99.6 5.2E-15 1.1E-19 125.0 10.3 89 382-483 1-89 (89)
70 KOG3676|consensus 99.6 2.8E-14 6.1E-19 155.8 17.3 200 559-764 103-330 (782)
71 KOG0195|consensus 99.6 4.5E-15 9.7E-20 140.1 9.1 133 386-527 8-141 (448)
72 KOG3676|consensus 99.6 6.8E-14 1.5E-18 152.9 17.6 245 412-680 102-367 (782)
73 cd00204 ANK ankyrin repeats; 99.6 6.7E-14 1.4E-18 128.0 14.4 124 374-506 3-126 (126)
74 KOG4214|consensus 99.5 5.1E-14 1.1E-18 108.8 8.8 104 345-451 4-107 (117)
75 PF05729 NACHT: NACHT domain 99.5 3.3E-14 7.2E-19 137.2 9.3 163 38-245 1-164 (166)
76 cd00204 ANK ankyrin repeats; 99.5 5E-13 1.1E-17 122.2 15.7 119 590-722 7-125 (126)
77 KOG4214|consensus 99.4 4.7E-13 1E-17 103.5 7.0 103 380-492 4-106 (117)
78 PF13637 Ank_4: Ankyrin repeat 99.3 6.2E-12 1.3E-16 93.6 6.5 53 884-936 2-54 (54)
79 KOG1710|consensus 99.3 1.7E-11 3.7E-16 116.4 10.6 114 344-459 13-127 (396)
80 COG0666 Arp FOG: Ankyrin repea 99.3 4.4E-11 9.5E-16 123.0 14.8 130 371-509 66-203 (235)
81 PF13637 Ank_4: Ankyrin repeat 99.3 1E-11 2.2E-16 92.5 6.8 54 378-431 1-54 (54)
82 COG0666 Arp FOG: Ankyrin repea 99.2 5E-11 1.1E-15 122.6 12.9 127 339-476 69-203 (235)
83 PF13857 Ank_5: Ankyrin repeat 99.2 7.7E-12 1.7E-16 93.4 4.5 55 864-923 1-56 (56)
84 KOG0515|consensus 99.2 7.5E-11 1.6E-15 121.3 8.8 91 346-438 553-643 (752)
85 KOG0515|consensus 99.2 1.1E-10 2.5E-15 120.0 10.1 125 627-769 554-679 (752)
86 PF13857 Ank_5: Ankyrin repeat 99.2 4E-11 8.7E-16 89.5 4.7 50 369-418 7-56 (56)
87 PTZ00322 6-phosphofructo-2-kin 99.1 1.7E-10 3.6E-15 134.6 11.3 86 346-433 85-170 (664)
88 KOG1710|consensus 99.1 3.8E-10 8.2E-15 107.4 11.1 121 591-725 13-134 (396)
89 PTZ00322 6-phosphofructo-2-kin 99.1 2.9E-10 6.2E-15 132.7 12.4 84 380-463 84-167 (664)
90 PF00931 NB-ARC: NB-ARC domain 98.9 8.8E-09 1.9E-13 109.2 13.5 207 15-285 1-208 (287)
91 PF13191 AAA_16: AAA ATPase do 98.9 2.2E-09 4.8E-14 105.5 5.6 149 11-171 1-165 (185)
92 PF01637 Arch_ATPase: Archaeal 98.8 2E-08 4.4E-13 103.1 11.2 224 12-278 1-233 (234)
93 TIGR02928 orc1/cdc6 family rep 98.6 7.1E-07 1.5E-11 98.1 14.9 229 10-283 15-250 (365)
94 KOG0782|consensus 98.5 3.6E-07 7.8E-12 95.3 10.4 117 347-474 870-988 (1004)
95 PF13606 Ank_3: Ankyrin repeat 98.5 1.1E-07 2.4E-12 59.7 3.9 27 884-910 3-29 (30)
96 PF13606 Ank_3: Ankyrin repeat 98.5 1.4E-07 3E-12 59.3 4.1 28 378-405 2-29 (30)
97 KOG0783|consensus 98.5 7.7E-08 1.7E-12 105.0 4.7 105 354-458 28-133 (1267)
98 KOG0506|consensus 98.5 1.6E-07 3.4E-12 96.2 5.6 94 339-434 502-596 (622)
99 PRK04841 transcriptional regul 98.5 2E-06 4.3E-11 107.5 16.7 221 6-285 10-231 (903)
100 PRK00411 cdc6 cell division co 98.5 2.9E-06 6.3E-11 94.4 15.5 186 10-245 30-221 (394)
101 PF00023 Ank: Ankyrin repeat H 98.4 4.3E-07 9.4E-12 59.1 4.3 31 884-914 3-33 (33)
102 PF13401 AAA_22: AAA domain; P 98.4 2.2E-06 4.8E-11 78.4 10.7 125 36-209 3-127 (131)
103 PTZ00112 origin recognition co 98.4 4.3E-06 9.4E-11 94.6 14.2 219 10-284 755-983 (1164)
104 KOG0783|consensus 98.4 1.7E-07 3.8E-12 102.3 3.1 85 840-928 42-131 (1267)
105 TIGR03015 pepcterm_ATPase puta 98.4 8.6E-06 1.9E-10 85.3 15.9 195 36-284 42-243 (269)
106 PRK00440 rfc replication facto 98.3 5.7E-06 1.2E-10 89.2 14.2 191 11-284 18-208 (319)
107 PF00023 Ank: Ankyrin repeat H 98.3 8.9E-07 1.9E-11 57.6 4.5 31 378-408 2-32 (33)
108 KOG0782|consensus 98.3 1.8E-06 4E-11 90.2 8.8 120 594-725 870-989 (1004)
109 PRK12402 replication factor C 98.3 1E-05 2.2E-10 88.1 14.8 217 10-284 15-231 (337)
110 COG2909 MalT ATP-dependent tra 98.3 3.8E-05 8.1E-10 86.7 18.3 192 35-273 35-227 (894)
111 PF14516 AAA_35: AAA-like doma 98.3 2E-05 4.3E-10 84.1 15.5 238 2-286 3-246 (331)
112 KOG0818|consensus 98.3 3.3E-06 7.1E-11 87.2 8.8 85 381-474 136-221 (669)
113 KOG0818|consensus 98.2 5.1E-06 1.1E-10 85.8 9.4 86 346-433 136-222 (669)
114 KOG0506|consensus 98.2 1.4E-06 3.1E-11 89.4 4.9 91 667-762 503-593 (622)
115 TIGR03420 DnaA_homol_Hda DnaA 98.2 1E-05 2.2E-10 82.2 11.1 178 15-284 22-206 (226)
116 COG3899 Predicted ATPase [Gene 98.2 1.4E-05 3.1E-10 95.5 13.2 239 12-286 2-267 (849)
117 KOG0705|consensus 98.2 3.7E-06 8E-11 88.6 6.9 84 861-945 640-723 (749)
118 PLN03025 replication factor C 98.1 2.3E-05 5E-10 83.6 13.0 191 11-283 14-204 (319)
119 PRK14949 DNA polymerase III su 98.1 4.4E-05 9.5E-10 88.3 15.1 207 10-282 16-223 (944)
120 PRK14956 DNA polymerase III su 98.1 2.2E-05 4.7E-10 85.3 11.6 106 156-283 121-226 (484)
121 KOG0522|consensus 98.1 8.9E-06 1.9E-10 85.6 8.0 89 345-433 22-110 (560)
122 PRK08691 DNA polymerase III su 98.0 3.6E-05 7.8E-10 87.0 11.9 106 157-284 120-225 (709)
123 PRK07003 DNA polymerase III su 98.0 8.5E-05 1.8E-09 84.2 14.6 205 12-282 18-223 (830)
124 COG2256 MGS1 ATPase related to 98.0 0.00015 3.3E-09 74.8 14.2 108 155-281 103-214 (436)
125 PRK08084 DNA replication initi 98.0 5.7E-05 1.2E-09 76.4 11.2 108 159-284 100-214 (235)
126 KOG0511|consensus 98.0 2.3E-05 5E-10 78.4 8.0 69 886-954 39-109 (516)
127 PRK14960 DNA polymerase III su 97.9 0.00012 2.6E-09 82.1 13.9 207 11-283 16-223 (702)
128 KOG2384|consensus 97.9 2.5E-05 5.5E-10 70.6 6.7 68 868-940 2-70 (223)
129 KOG0511|consensus 97.9 2.6E-05 5.6E-10 78.0 7.4 54 382-435 40-93 (516)
130 PRK04195 replication factor C 97.9 0.00017 3.6E-09 81.7 14.5 193 10-284 14-207 (482)
131 PRK14961 DNA polymerase III su 97.9 0.00012 2.6E-09 79.5 12.4 207 10-283 16-224 (363)
132 PRK05896 DNA polymerase III su 97.9 0.00014 3.1E-09 81.5 13.1 208 10-284 16-225 (605)
133 KOG0705|consensus 97.9 4.4E-05 9.5E-10 80.8 8.5 94 627-731 628-721 (749)
134 TIGR00635 ruvB Holliday juncti 97.9 0.00012 2.6E-09 78.2 12.1 51 10-61 4-54 (305)
135 PRK14957 DNA polymerase III su 97.8 0.00015 3.3E-09 81.3 12.5 107 156-284 119-225 (546)
136 PRK14955 DNA polymerase III su 97.8 0.00019 4.2E-09 78.8 13.2 106 156-284 127-233 (397)
137 KOG2384|consensus 97.8 4.4E-05 9.4E-10 69.1 6.4 76 368-443 2-78 (223)
138 PLN03210 Resistant to P. syrin 97.8 0.00027 5.9E-09 89.2 15.9 52 7-62 181-232 (1153)
139 PRK07994 DNA polymerase III su 97.8 0.00026 5.7E-09 80.7 14.0 207 11-283 17-224 (647)
140 KOG0522|consensus 97.8 4E-05 8.6E-10 80.9 6.7 80 380-459 22-103 (560)
141 KOG3609|consensus 97.8 0.00011 2.4E-09 82.6 10.3 133 557-700 25-161 (822)
142 PRK14970 DNA polymerase III su 97.8 0.0004 8.6E-09 76.1 14.8 199 9-284 16-214 (367)
143 PTZ00202 tuzin; Provisional 97.8 0.00014 3E-09 76.6 10.2 81 3-105 255-335 (550)
144 PRK14951 DNA polymerase III su 97.8 0.00043 9.4E-09 78.8 15.2 213 10-283 16-229 (618)
145 PRK08451 DNA polymerase III su 97.8 0.00043 9.4E-09 77.2 14.9 106 157-284 118-223 (535)
146 PF00004 AAA: ATPase family as 97.8 9.9E-05 2.1E-09 67.6 8.5 59 156-216 58-119 (132)
147 PRK08903 DnaA regulatory inact 97.8 0.00013 2.7E-09 74.0 9.8 48 9-61 17-66 (227)
148 KOG3609|consensus 97.7 7.9E-05 1.7E-09 83.7 8.4 121 345-481 27-159 (822)
149 PRK12323 DNA polymerase III su 97.7 0.00024 5.1E-09 79.6 12.1 210 12-282 18-228 (700)
150 PRK13342 recombination factor 97.7 0.00035 7.6E-09 77.4 13.4 45 10-60 12-59 (413)
151 PRK14969 DNA polymerase III su 97.7 0.00039 8.5E-09 78.8 13.4 207 11-283 17-224 (527)
152 PHA02544 44 clamp loader, smal 97.7 0.00073 1.6E-08 72.5 15.0 45 11-60 22-66 (316)
153 PRK09087 hypothetical protein; 97.7 0.0005 1.1E-08 68.7 12.6 104 159-284 90-200 (226)
154 PRK14958 DNA polymerase III su 97.7 0.00033 7.2E-09 78.7 12.6 205 13-283 19-224 (509)
155 PRK06893 DNA replication initi 97.7 0.00021 4.5E-09 72.0 9.8 108 159-284 94-208 (229)
156 PRK07133 DNA polymerase III su 97.7 0.00037 8.1E-09 79.9 12.7 204 12-284 20-224 (725)
157 PRK14962 DNA polymerase III su 97.7 0.00084 1.8E-08 74.7 15.1 105 156-283 117-222 (472)
158 COG1474 CDC6 Cdc6-related prot 97.7 0.00098 2.1E-08 71.4 15.0 212 11-284 18-239 (366)
159 PRK00080 ruvB Holliday junctio 97.7 0.00039 8.4E-09 74.7 12.0 55 6-61 21-75 (328)
160 PRK14954 DNA polymerase III su 97.6 0.00064 1.4E-08 77.8 13.9 104 158-284 129-233 (620)
161 TIGR02397 dnaX_nterm DNA polym 97.6 0.00069 1.5E-08 74.2 13.9 207 11-284 15-223 (355)
162 PRK07764 DNA polymerase III su 97.6 0.00072 1.6E-08 80.1 14.6 210 11-284 16-226 (824)
163 PF00308 Bac_DnaA: Bacterial d 97.6 0.00097 2.1E-08 66.4 13.3 172 37-283 34-212 (219)
164 PRK06645 DNA polymerase III su 97.6 0.00069 1.5E-08 75.6 13.3 106 156-284 128-234 (507)
165 PRK14963 DNA polymerase III su 97.6 0.001 2.2E-08 74.7 14.3 105 157-284 117-222 (504)
166 KOG0521|consensus 97.6 7.5E-05 1.6E-09 86.8 5.5 70 860-934 671-740 (785)
167 PF07693 KAP_NTPase: KAP famil 97.6 0.00036 7.8E-09 75.4 10.5 77 21-107 7-84 (325)
168 PRK09112 DNA polymerase III su 97.6 0.00049 1.1E-08 73.4 11.2 217 10-280 23-241 (351)
169 PRK07471 DNA polymerase III su 97.6 0.00084 1.8E-08 72.1 13.0 222 5-280 14-239 (365)
170 PRK09111 DNA polymerase III su 97.6 0.00096 2.1E-08 76.2 14.2 212 11-283 25-237 (598)
171 PRK14965 DNA polymerase III su 97.6 0.001 2.2E-08 76.5 14.4 208 10-284 16-225 (576)
172 PF10443 RNA12: RNA12 protein; 97.6 0.00091 2E-08 70.8 12.7 198 17-247 3-232 (431)
173 PRK08727 hypothetical protein; 97.6 0.0007 1.5E-08 68.4 11.7 107 159-284 96-209 (233)
174 PRK14950 DNA polymerase III su 97.5 0.00082 1.8E-08 77.7 13.5 209 11-284 17-226 (585)
175 PRK14948 DNA polymerase III su 97.5 0.00087 1.9E-08 77.2 13.3 209 12-284 18-227 (620)
176 PRK14952 DNA polymerase III su 97.5 0.0016 3.5E-08 74.0 14.4 211 11-284 14-224 (584)
177 PRK05563 DNA polymerase III su 97.5 0.0005 1.1E-08 78.6 10.4 206 11-283 17-224 (559)
178 PRK06305 DNA polymerase III su 97.5 0.0018 4E-08 71.9 14.5 106 156-284 121-227 (451)
179 cd00009 AAA The AAA+ (ATPases 97.5 0.00018 3.8E-09 67.6 5.7 43 14-62 2-44 (151)
180 PRK05564 DNA polymerase III su 97.5 0.0019 4.1E-08 68.8 14.1 46 12-62 6-51 (313)
181 TIGR03689 pup_AAA proteasome A 97.5 0.00091 2E-08 74.2 11.7 27 37-63 216-242 (512)
182 PRK14953 DNA polymerase III su 97.4 0.0026 5.6E-08 71.3 15.2 47 11-62 17-63 (486)
183 PRK14959 DNA polymerase III su 97.4 0.0013 2.9E-08 74.4 12.5 106 156-283 119-224 (624)
184 KOG0521|consensus 97.4 0.00014 3.1E-09 84.5 5.0 84 376-459 654-737 (785)
185 PRK13341 recombination factor 97.4 0.002 4.3E-08 75.5 14.2 44 11-60 29-75 (725)
186 KOG0734|consensus 97.4 0.00058 1.3E-08 72.7 8.3 51 20-84 317-370 (752)
187 TIGR00362 DnaA chromosomal rep 97.3 0.0021 4.5E-08 71.4 13.2 107 159-284 202-315 (405)
188 PRK06620 hypothetical protein; 97.3 0.0031 6.7E-08 62.4 12.9 102 159-284 88-194 (214)
189 PRK14971 DNA polymerase III su 97.3 0.0033 7.2E-08 72.5 14.8 105 158-284 123-227 (614)
190 PRK00149 dnaA chromosomal repl 97.3 0.0018 4E-08 72.7 12.4 107 159-284 214-327 (450)
191 PRK14964 DNA polymerase III su 97.3 0.0027 5.8E-08 70.3 13.2 105 157-284 117-222 (491)
192 PRK06647 DNA polymerase III su 97.3 0.0031 6.6E-08 71.9 14.0 207 11-284 17-225 (563)
193 TIGR00678 holB DNA polymerase 97.3 0.0028 6.2E-08 61.9 11.9 91 155-274 95-186 (188)
194 PRK07940 DNA polymerase III su 97.3 0.004 8.6E-08 67.6 14.0 51 12-62 7-61 (394)
195 KOG0989|consensus 97.3 0.0021 4.5E-08 64.1 10.5 82 194-285 155-236 (346)
196 PRK05707 DNA polymerase III su 97.3 0.0058 1.2E-07 64.8 14.8 197 16-279 6-203 (328)
197 KOG0744|consensus 97.3 0.00056 1.2E-08 68.2 6.6 29 35-63 175-203 (423)
198 KOG0727|consensus 97.2 0.00079 1.7E-08 64.3 6.9 55 155-209 247-305 (408)
199 PRK14087 dnaA chromosomal repl 97.2 0.0023 5E-08 71.1 11.8 189 21-284 129-324 (450)
200 KOG2227|consensus 97.2 0.005 1.1E-07 65.1 12.6 81 10-103 150-230 (529)
201 KOG0739|consensus 97.1 0.0012 2.5E-08 65.0 7.1 21 38-58 167-187 (439)
202 KOG1514|consensus 97.1 0.0054 1.2E-07 68.2 12.9 191 10-248 396-593 (767)
203 KOG0520|consensus 97.1 0.00057 1.2E-08 78.9 5.7 119 339-459 570-695 (975)
204 TIGR02881 spore_V_K stage V sp 97.1 0.0027 5.9E-08 65.6 10.4 25 37-61 42-66 (261)
205 PRK05642 DNA replication initi 97.1 0.0041 8.9E-08 62.8 11.3 107 159-284 100-213 (234)
206 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0047 1E-07 68.9 12.4 26 36-61 258-283 (489)
207 PRK14088 dnaA chromosomal repl 97.1 0.0059 1.3E-07 67.9 13.0 36 22-62 120-155 (440)
208 PF05496 RuvB_N: Holliday junc 97.1 0.0053 1.1E-07 59.3 10.7 54 8-62 22-75 (233)
209 COG5635 Predicted NTPase (NACH 97.1 0.00074 1.6E-08 81.7 6.2 141 155-316 304-452 (824)
210 KOG0520|consensus 97.0 0.00075 1.6E-08 77.9 5.7 122 376-507 572-701 (975)
211 TIGR00763 lon ATP-dependent pr 97.0 0.0011 2.5E-08 79.4 7.5 51 11-61 321-371 (775)
212 COG1223 Predicted ATPase (AAA+ 97.0 0.0029 6.4E-08 61.1 8.4 27 36-62 150-176 (368)
213 CHL00181 cbbX CbbX; Provisiona 97.0 0.0087 1.9E-07 62.3 12.4 24 38-61 60-83 (287)
214 TIGR02880 cbbX_cfxQ probable R 96.9 0.0088 1.9E-07 62.3 12.1 24 38-61 59-82 (284)
215 KOG2028|consensus 96.9 0.015 3.3E-07 59.2 12.9 35 22-62 153-187 (554)
216 COG1222 RPT1 ATP-dependent 26S 96.9 0.0018 4E-08 65.9 6.5 56 154-209 242-301 (406)
217 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0011 2.4E-08 69.4 4.2 52 12-63 53-104 (361)
218 KOG4658|consensus 96.8 0.028 6.1E-07 67.7 16.5 204 13-286 161-369 (889)
219 TIGR02640 gas_vesic_GvpN gas v 96.8 0.0022 4.7E-08 66.1 6.3 36 16-59 8-43 (262)
220 PRK03992 proteasome-activating 96.8 0.0082 1.8E-07 65.8 11.0 26 36-61 164-189 (389)
221 PRK14086 dnaA chromosomal repl 96.8 0.015 3.2E-07 65.8 13.0 107 159-284 380-493 (617)
222 KOG2004|consensus 96.8 0.0042 9.2E-08 69.0 8.3 166 20-241 421-597 (906)
223 PTZ00454 26S protease regulato 96.8 0.012 2.6E-07 64.2 11.9 26 36-61 178-203 (398)
224 PF13173 AAA_14: AAA domain 96.8 0.0028 6.1E-08 57.2 6.0 26 37-62 2-27 (128)
225 PLN00020 ribulose bisphosphate 96.8 0.012 2.6E-07 61.3 11.0 26 36-61 147-172 (413)
226 PRK12422 chromosomal replicati 96.8 0.021 4.5E-07 63.4 13.8 106 159-283 205-317 (445)
227 KOG2543|consensus 96.7 0.013 2.9E-07 60.3 11.0 76 10-104 6-81 (438)
228 PF06309 Torsin: Torsin; Inte 96.7 0.0034 7.4E-08 54.5 5.9 42 18-62 37-78 (127)
229 KOG0733|consensus 96.7 0.01 2.2E-07 64.8 10.5 27 36-62 222-248 (802)
230 PRK07952 DNA replication prote 96.7 0.0089 1.9E-07 60.1 9.5 42 17-62 83-124 (244)
231 TIGR00602 rad24 checkpoint pro 96.6 0.024 5.2E-07 65.1 13.4 43 19-62 93-135 (637)
232 COG3267 ExeA Type II secretory 96.6 0.03 6.5E-07 54.8 11.6 191 36-282 50-248 (269)
233 KOG1970|consensus 96.6 0.028 6E-07 60.9 12.4 38 21-62 93-135 (634)
234 PF13245 AAA_19: Part of AAA d 96.5 0.0014 3E-08 52.2 2.1 26 36-61 9-34 (76)
235 KOG2228|consensus 96.5 0.0048 1E-07 62.3 5.8 132 20-189 34-166 (408)
236 PRK06526 transposase; Provisio 96.5 0.0068 1.5E-07 61.6 7.0 31 23-61 92-122 (254)
237 PF07088 GvpD: GvpD gas vesicl 96.4 0.0017 3.7E-08 66.9 2.5 28 36-63 9-36 (484)
238 PF05673 DUF815: Protein of un 96.4 0.014 3E-07 57.3 8.6 56 155-218 105-160 (249)
239 PRK11331 5-methylcytosine-spec 96.4 0.004 8.7E-08 67.3 5.3 41 14-62 179-219 (459)
240 PF06745 KaiC: KaiC; InterPro 96.4 0.0088 1.9E-07 60.5 7.6 105 36-168 18-127 (226)
241 cd02019 NK Nucleoside/nucleoti 96.4 0.0021 4.6E-08 50.3 2.2 23 39-61 1-23 (69)
242 PRK07399 DNA polymerase III su 96.3 0.064 1.4E-06 56.6 13.7 46 12-62 6-51 (314)
243 TIGR02902 spore_lonB ATP-depen 96.3 0.01 2.3E-07 67.7 8.4 43 12-60 67-109 (531)
244 PF01583 APS_kinase: Adenylyls 96.3 0.0018 3.9E-08 59.4 1.7 25 38-62 3-27 (156)
245 PRK08116 hypothetical protein; 96.3 0.01 2.3E-07 61.1 7.2 26 37-62 114-139 (268)
246 TIGR02974 phageshock_pspF psp 96.3 0.058 1.3E-06 57.5 13.0 118 157-284 94-230 (329)
247 TIGR02639 ClpA ATP-dependent C 96.2 0.027 5.8E-07 67.5 11.5 47 9-61 181-227 (731)
248 TIGR03345 VI_ClpV1 type VI sec 96.2 0.037 8E-07 66.9 12.6 49 7-61 184-232 (852)
249 PRK12608 transcription termina 96.2 0.0091 2E-07 63.0 6.5 61 36-106 132-192 (380)
250 PRK10787 DNA-binding ATP-depen 96.2 0.017 3.7E-07 68.8 9.4 52 10-61 322-373 (784)
251 PF00910 RNA_helicase: RNA hel 96.1 0.0022 4.8E-08 55.6 1.3 23 40-62 1-23 (107)
252 TIGR01241 FtsH_fam ATP-depende 96.1 0.026 5.6E-07 64.4 10.2 24 37-60 88-111 (495)
253 KOG0738|consensus 96.1 0.023 4.9E-07 58.7 8.3 69 38-121 246-320 (491)
254 PF14532 Sigma54_activ_2: Sigm 96.1 0.014 3E-07 53.5 6.5 25 36-60 20-44 (138)
255 PTZ00361 26 proteosome regulat 96.1 0.027 6E-07 61.8 9.7 25 37-61 217-241 (438)
256 TIGR01242 26Sp45 26S proteasom 96.1 0.016 3.6E-07 63.2 8.0 26 37-62 156-181 (364)
257 PF03215 Rad17: Rad17 cell cyc 96.1 0.0049 1.1E-07 69.2 3.8 43 20-63 29-71 (519)
258 PRK11608 pspF phage shock prot 96.1 0.026 5.6E-07 60.3 9.1 47 9-59 5-51 (326)
259 KOG1969|consensus 96.0 0.013 2.8E-07 65.5 6.8 28 33-60 322-349 (877)
260 COG1102 Cmk Cytidylate kinase 96.0 0.005 1.1E-07 55.3 2.9 23 40-62 3-25 (179)
261 CHL00095 clpC Clp protease ATP 96.0 0.03 6.6E-07 67.9 10.5 45 11-61 180-224 (821)
262 CHL00176 ftsH cell division pr 96.0 0.056 1.2E-06 62.7 12.1 24 37-60 216-239 (638)
263 COG0529 CysC Adenylylsulfate k 96.0 0.0041 8.8E-08 56.7 2.2 27 36-62 22-48 (197)
264 TIGR01351 adk adenylate kinase 96.0 0.021 4.6E-07 56.8 7.6 21 40-60 2-22 (210)
265 KOG0743|consensus 95.9 0.0059 1.3E-07 64.7 3.5 37 23-62 224-260 (457)
266 COG1618 Predicted nucleotide k 95.9 0.0041 8.8E-08 55.8 1.9 35 40-83 8-42 (179)
267 PRK06762 hypothetical protein; 95.9 0.0048 1E-07 58.9 2.6 24 38-61 3-26 (166)
268 KOG2505|consensus 95.9 0.0082 1.8E-07 63.2 4.4 41 884-924 431-471 (591)
269 PF10923 DUF2791: P-loop Domai 95.9 0.037 8E-07 59.7 9.4 84 12-107 27-113 (416)
270 PLN02674 adenylate kinase 95.9 0.044 9.5E-07 54.9 9.3 41 16-60 14-54 (244)
271 COG0466 Lon ATP-dependent Lon 95.9 0.032 6.9E-07 62.7 9.0 47 16-62 329-375 (782)
272 KOG0652|consensus 95.9 0.057 1.2E-06 52.3 9.4 56 154-209 262-321 (424)
273 PF13207 AAA_17: AAA domain; P 95.9 0.0056 1.2E-07 54.8 2.6 22 39-60 1-22 (121)
274 KOG0731|consensus 95.8 0.021 4.5E-07 65.5 7.4 60 10-83 311-376 (774)
275 PRK08769 DNA polymerase III su 95.8 0.08 1.7E-06 55.6 11.1 97 156-280 113-209 (319)
276 KOG3079|consensus 95.8 0.038 8.2E-07 51.0 7.5 91 33-165 4-95 (195)
277 TIGR01817 nifA Nif-specific re 95.8 0.099 2.1E-06 60.5 13.0 215 8-284 194-425 (534)
278 PF10236 DAP3: Mitochondrial r 95.7 0.016 3.5E-07 61.0 5.9 77 35-112 21-102 (309)
279 cd00984 DnaB_C DnaB helicase C 95.7 0.03 6.4E-07 57.4 7.7 56 36-105 12-67 (242)
280 PF00406 ADK: Adenylate kinase 95.7 0.03 6.5E-07 52.4 7.0 18 42-59 1-18 (151)
281 PF03969 AFG1_ATPase: AFG1-lik 95.7 0.031 6.7E-07 59.9 7.9 28 36-63 61-88 (362)
282 PRK13531 regulatory ATPase Rav 95.7 0.023 5E-07 62.2 6.9 44 10-61 20-63 (498)
283 PRK08233 hypothetical protein; 95.7 0.0077 1.7E-07 58.6 3.1 26 37-62 3-28 (182)
284 PRK06851 hypothetical protein; 95.7 0.0077 1.7E-07 64.0 3.0 42 36-86 29-70 (367)
285 smart00248 ANK ankyrin repeats 95.6 0.019 4.1E-07 35.4 3.8 27 884-910 3-29 (30)
286 KOG0726|consensus 95.6 0.064 1.4E-06 53.1 8.7 25 36-60 218-242 (440)
287 KOG3347|consensus 95.6 0.0071 1.5E-07 53.3 2.0 23 38-60 8-30 (176)
288 KOG0730|consensus 95.5 0.069 1.5E-06 59.5 9.8 148 35-245 216-368 (693)
289 PF03266 NTPase_1: NTPase; In 95.5 0.0055 1.2E-07 57.8 1.3 23 40-62 2-24 (168)
290 TIGR00767 rho transcription te 95.5 0.028 6.1E-07 59.8 6.7 62 35-106 166-227 (415)
291 cd00227 CPT Chloramphenicol (C 95.5 0.0089 1.9E-07 57.5 2.8 25 37-61 2-26 (175)
292 PLN03077 Protein ECB2; Provisi 95.5 7.9 0.00017 48.2 29.2 45 889-936 634-680 (857)
293 smart00248 ANK ankyrin repeats 95.5 0.022 4.9E-07 35.0 3.8 28 916-943 2-29 (30)
294 PRK08058 DNA polymerase III su 95.5 0.11 2.3E-06 55.6 11.0 42 16-62 12-53 (329)
295 PRK07993 DNA polymerase III su 95.5 0.2 4.2E-06 53.5 12.8 96 155-277 107-202 (334)
296 cd02021 GntK Gluconate kinase 95.4 0.0097 2.1E-07 55.7 2.7 22 39-60 1-22 (150)
297 PRK00279 adk adenylate kinase; 95.4 0.024 5.3E-07 56.6 5.6 22 40-61 3-24 (215)
298 PTZ00088 adenylate kinase 1; P 95.4 0.037 8.1E-07 55.2 6.8 21 40-60 9-29 (229)
299 PRK10463 hydrogenase nickel in 95.4 0.022 4.8E-07 58.2 5.2 37 21-63 94-130 (290)
300 KOG0736|consensus 95.4 0.26 5.7E-06 55.9 13.5 24 36-59 704-727 (953)
301 PF13671 AAA_33: AAA domain; P 95.4 0.0097 2.1E-07 55.1 2.4 22 39-60 1-22 (143)
302 PRK10820 DNA-binding transcrip 95.4 0.088 1.9E-06 60.2 10.5 44 11-58 205-248 (520)
303 cd03269 ABC_putative_ATPase Th 95.3 0.13 2.8E-06 51.3 10.5 27 36-62 25-51 (210)
304 PRK06871 DNA polymerase III su 95.3 0.25 5.5E-06 52.0 12.9 94 156-276 107-200 (325)
305 KOG2035|consensus 95.3 0.5 1.1E-05 46.9 13.6 208 35-304 32-254 (351)
306 PF06128 Shigella_OspC: Shigel 95.3 0.06 1.3E-06 50.9 7.2 46 895-940 229-278 (284)
307 PRK06851 hypothetical protein; 95.3 0.012 2.5E-07 62.6 2.9 41 36-85 213-253 (367)
308 TIGR01360 aden_kin_iso1 adenyl 95.3 0.012 2.5E-07 57.7 2.7 25 36-60 2-26 (188)
309 smart00382 AAA ATPases associa 95.3 0.016 3.5E-07 53.6 3.6 26 38-63 3-28 (148)
310 KOG0735|consensus 95.3 0.13 2.8E-06 57.7 10.6 27 36-62 430-456 (952)
311 PRK09361 radB DNA repair and r 95.3 0.033 7.1E-07 56.3 6.0 26 36-61 22-47 (225)
312 KOG0635|consensus 95.2 0.016 3.5E-07 50.9 3.0 36 20-62 21-56 (207)
313 PF05621 TniB: Bacterial TniB 95.2 0.2 4.4E-06 51.2 11.3 217 19-287 46-274 (302)
314 cd02027 APSK Adenosine 5'-phos 95.2 0.0095 2.1E-07 55.3 1.7 23 39-61 1-23 (149)
315 cd01128 rho_factor Transcripti 95.2 0.042 9E-07 55.6 6.4 61 35-105 14-74 (249)
316 KOG0735|consensus 95.2 0.3 6.6E-06 54.9 13.2 23 38-60 702-724 (952)
317 PRK06964 DNA polymerase III su 95.2 0.3 6.4E-06 52.0 12.9 42 17-62 5-46 (342)
318 KOG0651|consensus 95.2 0.07 1.5E-06 53.5 7.6 26 36-61 165-190 (388)
319 PRK13808 adenylate kinase; Pro 95.2 0.3 6.4E-06 51.3 12.6 21 40-60 3-23 (333)
320 PRK06696 uridine kinase; Valid 95.1 0.015 3.3E-07 58.5 3.1 45 15-62 3-47 (223)
321 PRK05541 adenylylsulfate kinas 95.1 0.0097 2.1E-07 57.4 1.6 27 36-62 6-32 (176)
322 PLN02459 probable adenylate ki 95.1 0.061 1.3E-06 54.1 7.2 21 40-60 32-52 (261)
323 PRK14529 adenylate kinase; Pro 95.1 0.058 1.3E-06 53.4 6.9 22 40-61 3-24 (223)
324 PF03158 DUF249: Multigene fam 95.1 0.082 1.8E-06 48.7 7.2 126 787-937 49-191 (192)
325 PRK00131 aroK shikimate kinase 95.1 0.015 3.2E-07 56.1 2.8 26 36-61 3-28 (175)
326 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.013 2.9E-07 57.0 2.3 23 39-61 1-23 (183)
327 KOG2505|consensus 95.0 0.028 6E-07 59.4 4.6 64 389-452 402-471 (591)
328 TIGR01243 CDC48 AAA family ATP 95.0 0.18 3.8E-06 60.8 12.2 25 37-61 212-236 (733)
329 PF08298 AAA_PrkA: PrkA AAA do 95.0 0.017 3.6E-07 60.0 3.0 52 11-62 62-113 (358)
330 PRK10865 protein disaggregatio 95.0 0.069 1.5E-06 64.8 8.5 48 9-62 177-224 (857)
331 PRK08118 topology modulation p 95.0 0.015 3.2E-07 55.2 2.3 23 40-62 4-26 (167)
332 cd01123 Rad51_DMC1_radA Rad51_ 95.0 0.053 1.1E-06 55.3 6.6 26 36-61 18-43 (235)
333 PF01695 IstB_IS21: IstB-like 94.9 0.01 2.3E-07 56.8 1.2 31 23-61 41-71 (178)
334 PRK14527 adenylate kinase; Pro 94.9 0.018 4E-07 56.3 3.0 26 36-61 5-30 (191)
335 COG3911 Predicted ATPase [Gene 94.9 0.02 4.4E-07 50.4 2.8 22 38-59 10-31 (183)
336 TIGR03608 L_ocin_972_ABC putat 94.9 0.13 2.9E-06 51.0 9.3 27 36-62 23-49 (206)
337 COG0464 SpoVK ATPases of the A 94.9 0.2 4.4E-06 57.4 11.9 25 36-60 275-299 (494)
338 PRK08939 primosomal protein Dn 94.8 0.02 4.3E-07 60.0 3.1 46 15-62 136-181 (306)
339 PRK10536 hypothetical protein; 94.8 0.034 7.4E-07 55.5 4.5 42 11-60 56-97 (262)
340 TIGR01650 PD_CobS cobaltochela 94.8 0.03 6.5E-07 58.3 4.3 49 6-62 41-89 (327)
341 PF13238 AAA_18: AAA domain; P 94.8 0.012 2.5E-07 53.4 1.2 22 40-61 1-22 (129)
342 cd01393 recA_like RecA is a b 94.8 0.1 2.2E-06 52.8 8.2 26 36-61 18-43 (226)
343 PRK06761 hypothetical protein; 94.8 0.021 4.5E-07 58.5 3.0 27 37-63 3-29 (282)
344 TIGR00150 HI0065_YjeE ATPase, 94.8 0.031 6.7E-07 49.9 3.7 27 36-62 21-47 (133)
345 COG1136 SalX ABC-type antimicr 94.8 0.23 4.9E-06 48.8 9.9 23 36-58 30-52 (226)
346 cd01122 GP4d_helicase GP4d_hel 94.7 0.097 2.1E-06 54.7 8.0 56 36-105 29-84 (271)
347 PF01580 FtsK_SpoIIIE: FtsK/Sp 94.7 0.012 2.6E-07 58.4 1.1 52 154-208 152-203 (205)
348 TIGR01243 CDC48 AAA family ATP 94.7 0.19 4.1E-06 60.6 11.3 24 38-61 488-511 (733)
349 PHA00729 NTP-binding motif con 94.7 0.026 5.6E-07 55.3 3.2 24 38-61 18-41 (226)
350 PHA02244 ATPase-like protein 94.7 0.035 7.5E-07 58.5 4.3 44 9-60 95-142 (383)
351 TIGR03346 chaperone_ClpB ATP-d 94.7 0.12 2.6E-06 63.1 9.6 46 10-61 173-218 (852)
352 PRK14531 adenylate kinase; Pro 94.7 0.019 4.2E-07 55.6 2.4 23 38-60 3-25 (183)
353 TIGR00764 lon_rel lon-related 94.7 0.049 1.1E-06 63.1 6.0 74 12-106 20-93 (608)
354 PRK12377 putative replication 94.6 0.02 4.3E-07 57.8 2.4 26 37-62 101-126 (248)
355 COG4088 Predicted nucleotide k 94.6 0.013 2.8E-07 54.8 0.9 26 38-63 2-27 (261)
356 KOG0733|consensus 94.6 0.1 2.2E-06 57.4 7.7 25 36-60 544-568 (802)
357 PLN02200 adenylate kinase fami 94.6 0.024 5.3E-07 57.0 3.0 24 37-60 43-66 (234)
358 PF13177 DNA_pol3_delta2: DNA 94.6 0.27 5.9E-06 46.3 9.8 40 18-62 5-44 (162)
359 PHA02774 E1; Provisional 94.6 0.039 8.4E-07 61.3 4.6 39 19-62 421-459 (613)
360 PRK11034 clpA ATP-dependent Cl 94.5 0.15 3.2E-06 60.5 9.6 44 11-60 187-230 (758)
361 COG1124 DppF ABC-type dipeptid 94.5 0.027 5.8E-07 54.8 2.8 27 36-62 32-58 (252)
362 PRK12339 2-phosphoglycerate ki 94.5 0.028 6.1E-07 54.7 2.9 24 37-60 3-26 (197)
363 PRK00889 adenylylsulfate kinas 94.5 0.021 4.7E-07 54.9 2.1 26 36-61 3-28 (175)
364 KOG0730|consensus 94.4 0.5 1.1E-05 53.0 12.5 25 36-60 467-491 (693)
365 PF06128 Shigella_OspC: Shigel 94.4 0.37 8.1E-06 45.8 9.7 45 561-612 157-201 (284)
366 PRK07261 topology modulation p 94.3 0.027 5.9E-07 53.7 2.4 22 40-61 3-24 (171)
367 PRK14737 gmk guanylate kinase; 94.3 0.045 9.7E-07 52.9 3.9 26 36-61 3-28 (186)
368 PF03158 DUF249: Multigene fam 94.3 0.41 8.9E-06 44.3 9.6 72 345-426 48-119 (192)
369 PRK04040 adenylate kinase; Pro 94.3 0.027 5.8E-07 54.5 2.3 24 38-61 3-26 (188)
370 PRK14738 gmk guanylate kinase; 94.2 0.039 8.6E-07 54.5 3.4 28 33-60 9-36 (206)
371 cd03266 ABC_NatA_sodium_export 94.2 0.4 8.6E-06 48.1 10.8 26 36-61 30-55 (218)
372 PRK15455 PrkA family serine pr 94.2 0.044 9.6E-07 60.8 4.0 50 13-62 79-128 (644)
373 PRK08181 transposase; Validate 94.2 0.036 7.8E-07 56.7 3.1 31 23-61 100-130 (269)
374 cd03258 ABC_MetN_methionine_tr 94.2 0.31 6.7E-06 49.5 10.0 27 36-62 30-56 (233)
375 PF13481 AAA_25: AAA domain; P 94.2 0.14 3.1E-06 50.2 7.3 27 36-62 31-57 (193)
376 PRK08699 DNA polymerase III su 94.1 0.37 7.9E-06 51.2 10.7 42 17-62 5-46 (325)
377 PF13555 AAA_29: P-loop contai 94.1 0.05 1.1E-06 40.8 2.9 23 39-61 25-47 (62)
378 PRK14532 adenylate kinase; Pro 94.1 0.032 6.9E-07 54.5 2.5 21 40-60 3-23 (188)
379 cd03292 ABC_FtsE_transporter F 94.1 0.43 9.3E-06 47.7 10.8 27 36-62 26-52 (214)
380 COG4240 Predicted kinase [Gene 94.1 0.035 7.5E-07 52.8 2.6 39 20-63 38-76 (300)
381 COG1131 CcmA ABC-type multidru 94.1 0.27 6E-06 51.5 9.6 80 16-103 18-106 (293)
382 PRK03846 adenylylsulfate kinas 94.1 0.034 7.4E-07 54.7 2.7 26 36-61 23-48 (198)
383 PRK03839 putative kinase; Prov 94.1 0.031 6.7E-07 54.1 2.4 23 39-61 2-24 (180)
384 cd03237 ABC_RNaseL_inhibitor_d 94.0 0.34 7.3E-06 49.4 9.9 27 36-62 24-50 (246)
385 COG1936 Predicted nucleotide k 94.0 0.036 7.9E-07 50.8 2.4 19 40-58 3-21 (180)
386 PRK14528 adenylate kinase; Pro 94.0 0.034 7.3E-07 54.0 2.4 22 39-60 3-24 (186)
387 PRK05480 uridine/cytidine kina 94.0 0.038 8.3E-07 55.0 2.9 26 36-61 5-30 (209)
388 cd02024 NRK1 Nicotinamide ribo 94.0 0.035 7.6E-07 53.3 2.4 23 39-61 1-23 (187)
389 PF07728 AAA_5: AAA domain (dy 94.0 0.039 8.4E-07 50.8 2.7 22 40-61 2-23 (139)
390 cd03218 ABC_YhbG The ABC trans 94.0 0.45 9.7E-06 48.3 10.7 27 36-62 25-51 (232)
391 TIGR02237 recomb_radB DNA repa 94.0 0.036 7.8E-07 55.2 2.6 26 36-61 11-36 (209)
392 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.34 7.4E-06 48.7 9.7 27 36-62 29-55 (220)
393 PRK10865 protein disaggregatio 93.9 0.047 1E-06 66.2 4.0 53 10-62 568-623 (857)
394 PRK09825 idnK D-gluconate kina 93.9 0.045 9.7E-07 52.4 3.1 25 37-61 3-27 (176)
395 cd03265 ABC_DrrA DrrA is the A 93.9 0.41 8.9E-06 48.1 10.3 26 36-61 25-50 (220)
396 PRK14530 adenylate kinase; Pro 93.9 0.036 7.9E-07 55.4 2.6 24 38-61 4-27 (215)
397 PRK01184 hypothetical protein; 93.9 0.037 8.1E-07 53.8 2.6 19 39-58 3-21 (184)
398 PRK02496 adk adenylate kinase; 93.9 0.034 7.3E-07 54.1 2.2 22 40-61 4-25 (184)
399 COG4136 ABC-type uncharacteriz 93.9 0.058 1.3E-06 47.7 3.3 29 36-64 27-55 (213)
400 PRK15453 phosphoribulokinase; 93.9 0.04 8.7E-07 55.7 2.7 27 36-62 4-30 (290)
401 PRK05022 anaerobic nitric oxid 93.8 0.76 1.6E-05 52.7 13.3 49 9-61 186-234 (509)
402 cd03268 ABC_BcrA_bacitracin_re 93.8 0.33 7E-06 48.3 9.2 26 36-61 25-50 (208)
403 TIGR01420 pilT_fam pilus retra 93.8 0.11 2.4E-06 55.9 6.1 35 21-62 113-147 (343)
404 PRK08154 anaerobic benzoate ca 93.8 0.053 1.2E-06 57.4 3.6 38 22-61 120-157 (309)
405 COG0563 Adk Adenylate kinase a 93.8 0.039 8.4E-07 52.6 2.3 22 40-61 3-24 (178)
406 PHA02624 large T antigen; Prov 93.8 0.063 1.4E-06 60.0 4.2 37 21-62 420-456 (647)
407 COG4167 SapF ABC-type antimicr 93.7 0.047 1E-06 50.0 2.6 51 9-60 11-62 (267)
408 PRK08356 hypothetical protein; 93.7 0.051 1.1E-06 53.3 3.2 23 36-58 4-26 (195)
409 cd01394 radB RadB. The archaea 93.7 0.041 8.9E-07 55.2 2.6 26 36-61 18-43 (218)
410 TIGR01277 thiQ thiamine ABC tr 93.7 0.47 1E-05 47.4 10.1 27 36-62 23-49 (213)
411 PTZ00301 uridine kinase; Provi 93.7 0.034 7.4E-07 54.6 1.9 24 38-61 4-27 (210)
412 KOG3928|consensus 93.7 1.9 4.2E-05 45.6 14.3 26 37-62 179-204 (461)
413 PRK06547 hypothetical protein; 93.6 0.053 1.1E-06 51.5 3.0 26 36-61 14-39 (172)
414 COG2874 FlaH Predicted ATPases 93.6 0.11 2.3E-06 49.5 4.8 141 36-208 27-168 (235)
415 TIGR03740 galliderm_ABC gallid 93.6 0.43 9.4E-06 48.0 9.8 26 36-61 25-50 (223)
416 PF13086 AAA_11: AAA domain; P 93.6 0.052 1.1E-06 55.4 3.1 23 39-61 19-41 (236)
417 cd01131 PilT Pilus retraction 93.6 0.049 1.1E-06 53.5 2.7 25 38-62 2-26 (198)
418 PRK06835 DNA replication prote 93.6 0.051 1.1E-06 57.5 3.0 37 22-62 172-208 (329)
419 KOG2170|consensus 93.6 0.16 3.5E-06 51.0 6.1 37 22-61 98-134 (344)
420 PRK13765 ATP-dependent proteas 93.5 0.096 2.1E-06 60.5 5.4 76 10-106 31-106 (637)
421 PRK06921 hypothetical protein; 93.5 0.06 1.3E-06 55.4 3.4 27 36-62 116-142 (266)
422 COG0593 DnaA ATPase involved i 93.5 0.91 2E-05 49.0 12.3 39 20-62 100-138 (408)
423 cd01428 ADK Adenylate kinase ( 93.5 0.043 9.4E-07 54.0 2.3 21 40-60 2-22 (194)
424 TIGR02012 tigrfam_recA protein 93.5 0.15 3.3E-06 53.3 6.3 26 36-61 54-79 (321)
425 TIGR03263 guanyl_kin guanylate 93.5 0.064 1.4E-06 51.9 3.4 24 38-61 2-25 (180)
426 PRK13975 thymidylate kinase; P 93.5 0.047 1E-06 53.8 2.5 25 38-62 3-27 (196)
427 TIGR01618 phage_P_loop phage n 93.5 0.058 1.3E-06 53.1 3.0 22 37-58 12-33 (220)
428 PRK06090 DNA polymerase III su 93.5 0.94 2E-05 47.7 12.1 41 17-62 7-50 (319)
429 cd03263 ABC_subfamily_A The AB 93.5 0.45 9.7E-06 47.8 9.6 27 36-62 27-53 (220)
430 PHA02530 pseT polynucleotide k 93.4 0.05 1.1E-06 57.9 2.8 24 38-61 3-26 (300)
431 TIGR01189 ccmA heme ABC export 93.4 0.45 9.7E-06 46.8 9.4 27 36-62 25-51 (198)
432 PRK14526 adenylate kinase; Pro 93.4 0.048 1E-06 53.8 2.4 21 40-60 3-23 (211)
433 PRK15429 formate hydrogenlyase 93.4 0.55 1.2E-05 56.2 11.8 42 11-60 377-422 (686)
434 cd01120 RecA-like_NTPases RecA 93.4 0.043 9.3E-07 52.2 2.1 23 39-61 1-23 (165)
435 TIGR00960 3a0501s02 Type II (G 93.4 0.39 8.4E-06 48.1 9.1 27 36-62 28-54 (216)
436 TIGR01288 nodI ATP-binding ABC 93.4 0.51 1.1E-05 50.0 10.3 27 36-62 29-55 (303)
437 PRK06217 hypothetical protein; 93.4 0.05 1.1E-06 52.8 2.5 22 40-61 4-25 (183)
438 TIGR00455 apsK adenylylsulfate 93.4 0.065 1.4E-06 52.1 3.3 26 36-61 17-42 (184)
439 PRK00625 shikimate kinase; Pro 93.4 0.048 1E-06 51.8 2.3 22 40-61 3-24 (173)
440 PRK13546 teichoic acids export 93.4 0.58 1.3E-05 48.3 10.3 27 36-62 49-75 (264)
441 TIGR01188 drrA daunorubicin re 93.4 0.45 9.7E-06 50.4 9.8 27 36-62 18-44 (302)
442 TIGR02211 LolD_lipo_ex lipopro 93.4 0.54 1.2E-05 47.3 10.0 27 36-62 30-56 (221)
443 COG2804 PulE Type II secretory 93.4 0.1 2.2E-06 56.9 4.8 37 21-64 249-285 (500)
444 TIGR02322 phosphon_PhnN phosph 93.4 0.057 1.2E-06 52.2 2.8 24 38-61 2-25 (179)
445 PF00485 PRK: Phosphoribulokin 93.4 0.041 8.9E-07 53.9 1.8 25 39-63 1-25 (194)
446 PRK09270 nucleoside triphospha 93.3 0.075 1.6E-06 53.7 3.7 41 18-63 19-59 (229)
447 PRK10733 hflB ATP-dependent me 93.3 0.24 5.2E-06 58.3 8.3 23 38-60 186-208 (644)
448 PF13604 AAA_30: AAA domain; P 93.3 0.07 1.5E-06 52.2 3.3 26 36-61 17-42 (196)
449 cd00820 PEPCK_HprK Phosphoenol 93.3 0.077 1.7E-06 45.2 3.1 23 36-58 14-36 (107)
450 CHL00206 ycf2 Ycf2; Provisiona 93.3 0.26 5.7E-06 62.3 8.7 26 36-61 1629-1654(2281)
451 TIGR02673 FtsE cell division A 93.3 0.72 1.6E-05 46.1 10.7 26 36-61 27-52 (214)
452 PF07999 RHSP: Retrotransposon 93.3 0.38 8.2E-06 52.9 9.2 61 15-83 103-166 (439)
453 TIGR02915 PEP_resp_reg putativ 93.3 0.37 8E-06 54.6 9.6 117 158-284 235-369 (445)
454 TIGR03410 urea_trans_UrtE urea 93.2 0.71 1.5E-05 46.7 10.7 27 36-62 25-51 (230)
455 COG1484 DnaC DNA replication p 93.2 0.061 1.3E-06 54.8 2.9 33 22-62 98-130 (254)
456 COG2812 DnaX DNA polymerase II 93.2 0.78 1.7E-05 51.2 11.5 81 194-284 145-225 (515)
457 PRK11388 DNA-binding transcrip 93.2 0.8 1.7E-05 54.5 12.6 118 157-284 417-551 (638)
458 PRK13536 nodulation factor exp 93.2 0.6 1.3E-05 50.2 10.4 63 36-98 66-137 (340)
459 PRK13543 cytochrome c biogenes 93.1 0.85 1.9E-05 45.5 10.9 27 36-62 36-62 (214)
460 cd01124 KaiC KaiC is a circadi 93.1 0.05 1.1E-06 53.1 2.0 21 40-60 2-22 (187)
461 TIGR00235 udk uridine kinase. 93.1 0.063 1.4E-06 53.3 2.7 27 36-62 5-31 (207)
462 PRK04182 cytidylate kinase; Pr 93.1 0.063 1.4E-06 52.0 2.6 23 39-61 2-24 (180)
463 cd00464 SK Shikimate kinase (S 93.1 0.056 1.2E-06 50.8 2.2 22 40-61 2-23 (154)
464 cd03259 ABC_Carb_Solutes_like 93.0 0.54 1.2E-05 46.9 9.4 27 36-62 25-51 (213)
465 TIGR00968 3a0106s01 sulfate AB 93.0 0.76 1.6E-05 46.8 10.5 26 36-61 25-50 (237)
466 PF03308 ArgK: ArgK protein; 93.0 0.043 9.3E-07 54.3 1.3 28 35-62 27-54 (266)
467 PF02367 UPF0079: Uncharacteri 93.0 0.068 1.5E-06 46.9 2.4 28 36-63 14-41 (123)
468 TIGR00176 mobB molybdopterin-g 93.0 0.058 1.3E-06 50.2 2.1 24 39-62 1-24 (155)
469 PRK09376 rho transcription ter 93.0 0.16 3.4E-06 54.1 5.4 60 35-104 167-226 (416)
470 TIGR03880 KaiC_arch_3 KaiC dom 93.0 0.27 5.9E-06 49.5 7.1 25 36-60 15-39 (224)
471 PRK05439 pantothenate kinase; 93.0 0.083 1.8E-06 55.0 3.4 38 22-62 74-111 (311)
472 PRK11889 flhF flagellar biosyn 93.0 0.52 1.1E-05 50.3 9.1 46 15-61 220-265 (436)
473 PRK10771 thiQ thiamine transpo 93.0 0.53 1.1E-05 47.7 9.3 26 36-61 24-49 (232)
474 TIGR02324 CP_lyasePhnL phospho 93.0 0.48 1E-05 47.7 8.9 27 36-62 33-59 (224)
475 PRK12724 flagellar biosynthesi 92.9 0.26 5.6E-06 53.3 7.1 24 37-60 223-246 (432)
476 TIGR01313 therm_gnt_kin carboh 92.9 0.061 1.3E-06 51.1 2.2 21 41-61 2-22 (163)
477 KOG0729|consensus 92.9 0.46 9.9E-06 46.5 7.9 55 155-209 269-327 (435)
478 PRK09435 membrane ATPase/prote 92.9 0.086 1.9E-06 55.6 3.4 27 36-62 55-81 (332)
479 PF01078 Mg_chelatase: Magnesi 92.9 0.077 1.7E-06 51.1 2.7 25 37-61 22-46 (206)
480 PRK11131 ATP-dependent RNA hel 92.8 0.41 8.9E-06 59.4 9.3 24 36-59 88-111 (1294)
481 COG0470 HolB ATPase involved i 92.8 0.45 9.6E-06 51.4 9.0 40 20-63 11-50 (325)
482 COG1703 ArgK Putative periplas 92.8 0.085 1.8E-06 53.0 2.9 49 33-90 47-95 (323)
483 PRK07667 uridine kinase; Provi 92.8 0.069 1.5E-06 52.2 2.4 27 36-62 16-42 (193)
484 PRK11248 tauB taurine transpor 92.8 0.75 1.6E-05 47.3 10.1 27 36-62 26-52 (255)
485 cd02028 UMPK_like Uridine mono 92.7 0.058 1.2E-06 51.9 1.8 24 39-62 1-24 (179)
486 PRK10751 molybdopterin-guanine 92.7 0.079 1.7E-06 49.8 2.6 27 36-62 5-31 (173)
487 cd03267 ABC_NatA_like Similar 92.7 0.71 1.5E-05 46.9 9.8 26 36-61 46-71 (236)
488 PRK09183 transposase/IS protei 92.7 0.08 1.7E-06 54.3 2.8 23 38-60 103-125 (259)
489 cd02023 UMPK Uridine monophosp 92.7 0.069 1.5E-06 52.6 2.3 23 39-61 1-23 (198)
490 TIGR03864 PQQ_ABC_ATP ABC tran 92.7 0.83 1.8E-05 46.5 10.2 26 36-61 26-51 (236)
491 PRK04132 replication factor C 92.7 1.2 2.6E-05 53.2 12.6 105 158-284 632-736 (846)
492 cd01129 PulE-GspE PulE/GspE Th 92.6 0.13 2.8E-06 52.9 4.2 27 36-62 79-105 (264)
493 PRK12338 hypothetical protein; 92.6 0.083 1.8E-06 54.9 2.8 25 37-61 4-28 (319)
494 PF03029 ATP_bind_1: Conserved 92.6 0.047 1E-06 55.0 0.9 22 42-63 1-22 (238)
495 TIGR03574 selen_PSTK L-seryl-t 92.6 0.059 1.3E-06 55.3 1.7 23 39-61 1-23 (249)
496 PLN02796 D-glycerate 3-kinase 92.5 0.13 2.7E-06 54.0 4.0 47 16-62 79-125 (347)
497 PF09848 DUF2075: Uncharacteri 92.5 0.071 1.5E-06 57.9 2.3 24 38-61 2-25 (352)
498 cd03296 ABC_CysA_sulfate_impor 92.5 0.76 1.7E-05 46.8 9.7 26 36-61 27-52 (239)
499 PRK13537 nodulation ABC transp 92.5 0.76 1.6E-05 48.7 9.9 65 36-100 32-105 (306)
500 PRK00300 gmk guanylate kinase; 92.4 0.11 2.3E-06 51.7 3.2 26 36-61 4-29 (205)
No 1
>KOG4177|consensus
Probab=100.00 E-value=2e-62 Score=558.17 Aligned_cols=566 Identities=30% Similarity=0.361 Sum_probs=518.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384 341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW 420 (978)
Q Consensus 341 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 420 (978)
..+.||+|+|+-+|+.++.+.++. .+..++..+.+|.||||.|++.|+.++++.|+..|+.++..+..+.||||.|+.
T Consensus 52 k~~~~pl~~aa~~~~~~v~~~ll~--~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~ 129 (1143)
T KOG4177|consen 52 KSGFTPLHIAAHYGNENVAELLLN--RGAIVNATARNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAAR 129 (1143)
T ss_pred ccccCHHHHHhhhhhhhhhhhhhc--cccccCcccccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhcc
Confidence 367788888888888888888887 777778788888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500 (978)
Q Consensus 421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~ 500 (978)
.|+.+++.+|+..+++++.+++.|.+|+++|+. ... +.++.++.. .+.. +++.|...++.+
T Consensus 130 ~g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~---~~~---------~~ll~~~~~------~d~l-~~~~~~~~~~~~ 190 (1143)
T KOG4177|consen 130 KGHVQVIELLLQHGAPINIKTKNGLSPLHMAAQ---VAC---------ARLLLEYKA------PDYL-RLHVAAHCGHAR 190 (1143)
T ss_pred cccHHHHHHHHHccCCCcccccCCCCchhhhcc---hhh---------hHHhhhccc------chhh-hhhHHhhcchHH
Confidence 888888888888888888888888888888876 333 666666544 1222 668888899999
Q ss_pred HHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy9384 501 IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580 (978)
Q Consensus 501 ~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g 580 (978)
+++.++...++.+..+.++.||+|.++ ..+..+++++++.+|+++...+..|.+|+|.|+..|+.+++.+++.+|
T Consensus 191 ~~~ll~~~~~~~~a~~~~~~tpl~~a~-----~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~g 265 (1143)
T KOG4177|consen 191 VAKLLLDKKADPNASALNGFTPLHIAC-----KKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHG 265 (1143)
T ss_pred HHhhhhcccCCccccccCCCCchhhhc-----cccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcc
Confidence 999999999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCC
Q psy9384 581 ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGS 660 (978)
Q Consensus 581 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~ 660 (978)
+.++..+..+.||+|.|+..+..++.++|+++|+++.......+|++|.|...|+.+++..+++.+
T Consensus 266 a~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~-------------- 331 (1143)
T KOG4177|consen 266 ASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAG-------------- 331 (1143)
T ss_pred cccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcH
Q psy9384 661 LDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA 740 (978)
Q Consensus 661 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~ 740 (978)
...+..+..|.+|+|+++..++.++..+|.+.+..-...+..+.||+|.|+.+|+.+++++++.+ |++++..+..|.||
T Consensus 332 ~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~gk~gvTp 410 (1143)
T KOG4177|consen 332 ATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEA-GADPNSAGKNGVTP 410 (1143)
T ss_pred CCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhc-cCCcccCCCCCcce
Confidence 78888999999999999999999999999999988888889999999999999999999999998 99999999999999
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhc-hHHHHHHHHHhc------ccccch
Q psy9384 741 LRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKK-RLHILRKIISIA------NNEHII 813 (978)
Q Consensus 741 L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g-~~~i~~~l~~~~------~~~~~t 813 (978)
||.|. ..++..+++.++ ++| ++.+..+..|.|++|.|+..| ..++...+...+ ...|.|
T Consensus 411 lh~aa-----~~~~~~~v~l~l----~~g-----A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T 476 (1143)
T KOG4177|consen 411 LHVAA-----HYGNPRVVKLLL----KRG-----ASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFT 476 (1143)
T ss_pred eeehh-----hccCcceEEEEe----ccC-----CChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCc
Confidence 99999 899999999999 999 999999999999999999999 788888887776 678999
Q ss_pred hhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc-----hhhhhhhccCCchhhhhhhCCCCCCchHH
Q psy9384 814 LFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA-----VPSATDEHFSRDTHMRIILGSSKVGEKIS 888 (978)
Q Consensus 814 ~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~-----~v~~L~~~g~~~~~~~~~~g~~~~~t~L~ 888 (978)
||| .|+..|+.+ +++.|++. ++..+.....+.+++|.+.. +.+.++++|++++.++ ..| .||||
T Consensus 477 ~Lh--laaq~Gh~~---~~~llle~-~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~-~r~----~TpLh 545 (1143)
T KOG4177|consen 477 PLH--LAAQEGHTE---VVQLLLEG-GANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRT-GRG----YTPLH 545 (1143)
T ss_pred chh--hhhccCCch---HHHHhhhc-CCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhc-ccc----cchHH
Confidence 999 999999999 99999999 99999999999999999988 8999999999999999 888 99999
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCCcccc--cchhhhhhhhcChhHHHHHH
Q psy9384 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFV--HYYYYYNSAKSGHETVLRLL 966 (978)
Q Consensus 889 ~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~--~~~~l~~A~~~~~~~~~~~L 966 (978)
+||.+|+.++||+|+++|||++.+++.|+||||.|+..|+.+++.+|+++|+++|... |.|||++|+..|+.+++++|
T Consensus 546 ~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l 625 (1143)
T KOG4177|consen 546 VAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLL 625 (1143)
T ss_pred HHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999955 88999999999999999999
Q ss_pred HhhcCC
Q psy9384 967 KQYADD 972 (978)
Q Consensus 967 ~~~~~~ 972 (978)
+..+.+
T Consensus 626 ~~~~~~ 631 (1143)
T KOG4177|consen 626 KVVTAT 631 (1143)
T ss_pred HhccCc
Confidence 999876
No 2
>KOG4177|consensus
Probab=100.00 E-value=4.8e-60 Score=538.74 Aligned_cols=557 Identities=28% Similarity=0.342 Sum_probs=524.4
Q ss_pred cccccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy9384 334 SRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWT 413 (978)
Q Consensus 334 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t 413 (978)
..++..+..|.+|||.|+..|+.++++.|+. .++..+..+..+.||||.|+..|+.+.+.+|+..|++++.+|..|.|
T Consensus 78 a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~--~ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~~~~k~~~g~t 155 (1143)
T KOG4177|consen 78 AIVNATARNGITPLHVASKRGDAEMVKLLLC--RGAQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAPINIKTKNGLS 155 (1143)
T ss_pred cccCcccccCccHHHHHHhhcchhHHHHHHh--ccCchhhcccCCCcchhhhcccccHHHHHHHHHccCCCcccccCCCC
Confidence 5667778899999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy9384 414 PLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493 (978)
Q Consensus 414 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A 493 (978)
|+|+|+. ...++++.++.. .+-. +++.|...++.++ +++++...++.+..+..+.||+|.|
T Consensus 156 ~l~~a~~---~~~~~ll~~~~~------~d~l-~~~~~~~~~~~~~---------~~ll~~~~~~~~a~~~~~~tpl~~a 216 (1143)
T KOG4177|consen 156 PLHMAAQ---VACARLLLEYKA------PDYL-RLHVAAHCGHARV---------AKLLLDKKADPNASALNGFTPLHIA 216 (1143)
T ss_pred chhhhcc---hhhhHHhhhccc------chhh-hhhHHhhcchHHH---------HhhhhcccCCccccccCCCCchhhh
Confidence 9999998 778888888755 2223 7799999999999 9999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy9384 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC 573 (978)
Q Consensus 494 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv 573 (978)
+..+..++++.++.+|+++...+..+-+|+|.|+ ..|+.+++.+|+.+|+.++..+..+.||+|.|+..+..++.
T Consensus 217 ~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~-----~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~ 291 (1143)
T KOG4177|consen 217 CKKNRIKVVELLLKHGADVSAKDESGLTPLHVAA-----FMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVC 291 (1143)
T ss_pred ccccccceeeeeeeccCcCCcccccCccHHHHHH-----hccchhHHHHHHhcccccCcccccccCcchhhhccchhhhH
Confidence 9999999999999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccc
Q psy9384 574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653 (978)
Q Consensus 574 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~ 653 (978)
++|+++|+++........||++.|...+..+++..+++.++.++..+..+.+|+|.++..++.++..++...+
T Consensus 292 ~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~------- 364 (1143)
T KOG4177|consen 292 KLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHG------- 364 (1143)
T ss_pred hhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCC
Q psy9384 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733 (978)
Q Consensus 654 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~ 733 (978)
......+..+.+|+|.|+..|..+++++++.+|++++.....|.||||.|+.+++..+++.++++ +++++..
T Consensus 365 -------~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~-gA~~~~~ 436 (1143)
T KOG4177|consen 365 -------AQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKR-GASPNAK 436 (1143)
T ss_pred -------cccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEecc-CCChhhH
Confidence 45555678899999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCcHHHHHHhcccchhH-HHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhc-----
Q psy9384 734 SHDGRTALRVNMKNVTKLSF-WYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIA----- 807 (978)
Q Consensus 734 ~~~g~t~L~~a~~~~~~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~----- 807 (978)
+..|+||+|+|+ ..+ ..++...++ ..| .+++.....|.||||.|+..|+.++++.+++..
T Consensus 437 ~~lG~T~lhvaa-----~~g~~~~~~~~l~----~~g-----~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~ 502 (1143)
T KOG4177|consen 437 AKLGYTPLHVAA-----KKGRYLQIARLLL----QYG-----ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNL 502 (1143)
T ss_pred hhcCCChhhhhh-----hcccHhhhhhhHh----hcC-----CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCc
Confidence 999999999999 777 888888888 999 999999999999999999999999999999976
Q ss_pred -ccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc-----hhhhhhhccCCchhhhhhhCCC
Q psy9384 808 -NNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA-----VPSATDEHFSRDTHMRIILGSS 881 (978)
Q Consensus 808 -~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~-----~v~~L~~~g~~~~~~~~~~g~~ 881 (978)
...+.+++| .+...+... +++.++++ |++++.++..|.||||.|+. +|++|+++|++++.++ +.|
T Consensus 503 ~~~~~l~~lh--la~~~~~v~---~~~~l~~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~-~~G-- 573 (1143)
T KOG4177|consen 503 DAKKGLTPLH--LAADEDTVK---VAKILLEH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD-KLG-- 573 (1143)
T ss_pred cchhccchhh--hhhhhhhHH---HHHHHhhc-CCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccC-CCC--
Confidence 677899999 999999999 99999999 99999999999999999999 9999999999999999 999
Q ss_pred CCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCC-----ccc--ccchhhhhh
Q psy9384 882 KVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS-----EYF--VHYYYYYNS 954 (978)
Q Consensus 882 ~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~-----~~~--~~~~~l~~A 954 (978)
+||||.||..|+.+|+.+|+++||++|..|.+|.|||++|++.|+++++++|+..|+.. ... .|.+|..++
T Consensus 574 --~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~ 651 (1143)
T KOG4177|consen 574 --YTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVA 651 (1143)
T ss_pred --CChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999883 222 256676554
Q ss_pred hh
Q psy9384 955 AK 956 (978)
Q Consensus 955 ~~ 956 (978)
..
T Consensus 652 e~ 653 (1143)
T KOG4177|consen 652 EE 653 (1143)
T ss_pred HH
Confidence 43
No 3
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=471.53 Aligned_cols=481 Identities=20% Similarity=0.174 Sum_probs=363.1
Q ss_pred HHHHHHcCCHHHHHHHHHhc----cCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHc
Q psy9384 347 LHKLCAENNINLLKTFLKSC----EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWG 421 (978)
Q Consensus 347 l~~a~~~~~~~~v~~ll~~~----~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~ 421 (978)
|+.++..|+.+.+-.++... .+.+....+..+.||||.|+..|+.++|+.|++.+++ ++..|..|.||||+|+..
T Consensus 6 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~ 85 (682)
T PHA02876 6 LYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICII 85 (682)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCC
Confidence 77777788775433333221 2334445567789999999999999999999998776 567788899999999988
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHc--CCCCccc----CCCCCcHHHHHHH
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAA--GAHVNAA----DSEGRTALIASAY 495 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~--g~~~~~~----~~~~~t~L~~A~~ 495 (978)
++.. ..++......+.....+.+.+..+.......+ +..|.+. |.++... .....++++.|+.
T Consensus 86 ~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 154 (682)
T PHA02876 86 PNVM--DIVISLTLDCDIILDIKYASIILNKHKLDEAC---------IHILKEAISGNDIHYDKINESIEYMKLIKERIQ 154 (682)
T ss_pred CCcc--ccccccccchhhcccccHHHHHHHHHHHHHHH---------HHHHHHHhcCCcccHHhhccchhhhHHHHHHHH
Confidence 8743 33333222222223334444433333222111 3333332 2222211 1223467888888
Q ss_pred cCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy9384 496 MGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575 (978)
Q Consensus 496 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~ 575 (978)
.++.+++++|++.|++++.++..|.||||+|+ ..|+.+++++|++.|++++..+..|.+||+.|+..++.+++++
T Consensus 155 ~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa-----~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~ 229 (682)
T PHA02876 155 QDELLIAEMLLEGGADVNAKDIYCITPIHYAA-----ERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA 229 (682)
T ss_pred CCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH-----HCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 89999999999999998888888889999888 6788889999999888888888888889999988888999998
Q ss_pred HHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCH-HHHHHHHHCCCccccccC
Q psy9384 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI-DVVNQLLDRGMILGCLAG 654 (978)
Q Consensus 576 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~-~iv~~Ll~~~~~~~~~~~ 654 (978)
|++++.+++. +.++++.|+..++.+++++|++.|++++..+..|.||||+|+..++. +++++|++.|
T Consensus 230 Ll~~~~~~~~----~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g-------- 297 (682)
T PHA02876 230 IIDNRSNINK----NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG-------- 297 (682)
T ss_pred HHhcCCCCCC----CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC--------
Confidence 8888776643 34788888888888888888888888888888888888888888876 5888888888
Q ss_pred CCCCCCCCccccCCCCchHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHC-CCHHHHHHHHhhcCCCCcC
Q psy9384 655 GRQTGSLDEQHRDNCGWTPLHYAAIEG-HEEVCRALLEAGAKVDQVDNDGRAPLILAAQD-GHYHLVEMFLEQYEANVNQ 732 (978)
Q Consensus 655 ~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~iv~~Ll~~~~~~~~~ 732 (978)
.+++.++..|.||||+|+..| ..+++++|+..|++++..|..|.||||+|+.. ++.++++.|++. |++++.
T Consensus 298 ------adin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-gadin~ 370 (682)
T PHA02876 298 ------ADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLEL-GANVNA 370 (682)
T ss_pred ------CCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc-CCCCcc
Confidence 677778888888888888888 58888888888888888888888888888875 467788888876 888888
Q ss_pred CCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccc
Q psy9384 733 KSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHI 812 (978)
Q Consensus 733 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~ 812 (978)
+|..|.||||+|+ ..++.+++++|+ ++| ++++..+..|.||||.|
T Consensus 371 ~d~~G~TpLh~Aa-----~~~~~~iv~~Ll----~~g-----ad~~~~~~~g~T~Lh~A--------------------- 415 (682)
T PHA02876 371 RDYCDKTPIHYAA-----VRNNVVIINTLL----DYG-----ADIEALSQKIGTALHFA--------------------- 415 (682)
T ss_pred CCCCCCCHHHHHH-----HcCCHHHHHHHH----HCC-----CCccccCCCCCchHHHH---------------------
Confidence 8888888888888 788888888888 888 77777765555444433
Q ss_pred hhhhhhhhhhhcc-cccccchhhhcccCCCcccccccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHH
Q psy9384 813 ILFHHSFSEWLLD-VKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAA 891 (978)
Q Consensus 813 t~l~~~~A~~~g~-~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~ 891 (978)
+..++ .. ++++|++. |+++|.+| ..| .||||+|+
T Consensus 416 --------~~~~~~~~---~vk~Ll~~-gadin~~d-----------------------------~~G----~TpLh~Aa 450 (682)
T PHA02876 416 --------LCGTNPYM---SVKTLIDR-GANVNSKN-----------------------------KDL----STPLHYAC 450 (682)
T ss_pred --------HHcCCHHH---HHHHHHhC-CCCCCcCC-----------------------------CCC----ChHHHHHH
Confidence 32222 33 55666666 66655554 445 78888899
Q ss_pred HhC-CHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCCcc
Q psy9384 892 QEG-HEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEY 944 (978)
Q Consensus 892 ~~g-~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~ 944 (978)
..| +.+++++|+++|+++|..|..|.||+++|+.++ +++++|+.+|++...
T Consensus 451 ~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~~ 502 (682)
T PHA02876 451 KKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELRD 502 (682)
T ss_pred HhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCCc
Confidence 877 689999999999999999999999999999876 589999999998775
No 4
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=7.6e-49 Score=464.61 Aligned_cols=477 Identities=18% Similarity=0.185 Sum_probs=292.9
Q ss_pred HHHHHHhCCH-HHHHH-----HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCcHHHHHHhc
Q psy9384 382 LNVAAHQGFV-DAVQI-----LLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD-VNCSDMGGRTALRAAAWG 454 (978)
Q Consensus 382 L~~A~~~g~~-~~v~~-----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~~~t~l~~A~~~ 454 (978)
|..|+..|+. +++.. |+..|++....+..+.||||.|+..||.|+|+.|++.+++ ++..+..|.||||+|+..
T Consensus 6 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~ 85 (682)
T PHA02876 6 LYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICII 85 (682)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCC
Confidence 6667777766 33333 4455777777788899999999999999999999999876 566778899999999988
Q ss_pred CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCccC----CCCCCChhhhhhh
Q psy9384 455 GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY--DADINQQ----DNDGRTALSVSAL 528 (978)
Q Consensus 455 ~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~----~~~~~t~l~~a~~ 528 (978)
++. +..++......+.....+.+.+..+.......+++.|-+. +.++... .....++++.++
T Consensus 86 ~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i- 153 (682)
T PHA02876 86 PNV-----------MDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERI- 153 (682)
T ss_pred CCc-----------cccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHH-
Confidence 874 2222222222222223333443333333322233333222 1121111 011122333333
Q ss_pred ccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHH
Q psy9384 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608 (978)
Q Consensus 529 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~ 608 (978)
..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.+||+.|+..++.++++.
T Consensus 154 ----~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~ 229 (682)
T PHA02876 154 ----QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA 229 (682)
T ss_pred ----HCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCH-HHHH
Q psy9384 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE-EVCR 687 (978)
Q Consensus 609 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~v~ 687 (978)
|++.+.+++. +.++++.|+..++.+.+++|++.| .+++..+..|.||||+|+..++. ++++
T Consensus 230 Ll~~~~~~~~----~~~~L~~ai~~~~~~~~~~Ll~~g--------------~~vn~~d~~g~TpLh~Aa~~~~~~~iv~ 291 (682)
T PHA02876 230 IIDNRSNINK----NDLSLLKAIRNEDLETSLLLYDAG--------------FSVNSIDDCKNTPLHHASQAPSLSRLVP 291 (682)
T ss_pred HHhcCCCCCC----CcHHHHHHHHcCCHHHHHHHHHCC--------------CCCCCCCCCCCCHHHHHHhCCCHHHHHH
Confidence 5555544432 234555555555555555555555 44455555555555555555553 3555
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHCC-CHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHH
Q psy9384 688 ALLEAGAKVDQVDNDGRAPLILAAQDG-HYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIIL 766 (978)
Q Consensus 688 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~ 766 (978)
+|++.|++++..|..|.||||+|+..| +.++++.|+.. |++++..+..|.||||+|+. ..++.+++++|+
T Consensus 292 lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~----~~~~~~iv~lLl---- 362 (682)
T PHA02876 292 KLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYITPLHQAST----LDRNKDIVITLL---- 362 (682)
T ss_pred HHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHH----hCCcHHHHHHHH----
Confidence 555555555555555555555555555 35555555554 55555555555555555551 123445555555
Q ss_pred hcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCccccc
Q psy9384 767 SSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAV 846 (978)
Q Consensus 767 ~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~ 846 (978)
+.| ++++..|. .|.|||| +|+..|+.+ ++++|++. |++++..
T Consensus 363 ~~g-----adin~~d~---------------------------~G~TpLh--~Aa~~~~~~---iv~~Ll~~-gad~~~~ 404 (682)
T PHA02876 363 ELG-----ANVNARDY---------------------------CDKTPIH--YAAVRNNVV---IINTLLDY-GADIEAL 404 (682)
T ss_pred HcC-----CCCccCCC---------------------------CCCCHHH--HHHHcCCHH---HHHHHHHC-CCCcccc
Confidence 555 55554443 3444444 555555555 55555555 5555544
Q ss_pred ccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCC-HHHHHHHHHcCCCCCCCcccCccHHHHHHH
Q psy9384 847 DLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGH-EDCVRLLLHYGADPKHSDHCGRNAFRVAAK 925 (978)
Q Consensus 847 ~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~-~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~ 925 (978)
+ ..| .||||+|+..++ ..++++|+++|+++|.+|..|.||||+|+.
T Consensus 405 ----------------------------~-~~g----~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~ 451 (682)
T PHA02876 405 ----------------------------S-QKI----GTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACK 451 (682)
T ss_pred ----------------------------C-CCC----CchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHH
Confidence 3 445 788888887665 578999999999999999999999999999
Q ss_pred cC-hHHHHHHHHHcCCCCccc--ccchhhhhhhhcChhHHHHHHHhhcCCCC
Q psy9384 926 SG-HETVLRLLKQYADDSEYF--VHYYYYYNSAKSGHETVLRLLKQYADDIP 974 (978)
Q Consensus 926 ~~-~~~~v~~L~~~g~~~~~~--~~~~~l~~A~~~~~~~~~~~L~~~~~~~~ 974 (978)
.| +.+++++|+++|+++|.. .|.||++.|+.++ ++++.|+.+|.+.+
T Consensus 452 ~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~ 501 (682)
T PHA02876 452 KNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELR 501 (682)
T ss_pred hCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence 77 789999999999999985 4889999999765 68999999997765
No 5
>PHA02917 ankyrin-like protein; Provisional
Probab=100.00 E-value=4.8e-48 Score=441.21 Aligned_cols=453 Identities=18% Similarity=0.152 Sum_probs=333.4
Q ss_pred HHHHHHHHHhccCCCccccCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH----HHHH
Q psy9384 356 INLLKTFLKSCEALDLELVDKHGQTALNVAAHQ---GFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS----AVVK 428 (978)
Q Consensus 356 ~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~----~iv~ 428 (978)
++.|+.++. .+.+.+..|.+|.||||+||.. |+.++|++|++.|++++.++..|.||||+|+..|+. ++++
T Consensus 12 ~~~~~~l~~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~ 89 (661)
T PHA02917 12 LDELKQMLR--DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM 89 (661)
T ss_pred HHHHHHHHh--ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence 567888887 7777788899999999997655 889999999999999999999999999999999985 4567
Q ss_pred HHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHH
Q psy9384 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA--YMGHADIVSSIL 506 (978)
Q Consensus 429 ~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~--~~~~~~~v~~Ll 506 (978)
.|++.+...+..+ ..++++.|+.+++.++ +++|+++|+++|..+..|.|||+.++ ..|+.+++++|+
T Consensus 90 ~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~---------vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi 158 (661)
T PHA02917 90 ALLEATGYSNIND--FNIFSYMKSKNVDVDL---------IKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFI 158 (661)
T ss_pred HHHhccCCCCCCC--cchHHHHHhhcCCHHH---------HHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHH
Confidence 8888754444433 2367788999999999 99999999999999999999999654 578999999999
Q ss_pred HcCCCCccCCC---CC-----------CChhhhhhhccC------CCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q psy9384 507 EYDADINQQDN---DG-----------RTALSVSALCVP------SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAF 566 (978)
Q Consensus 507 ~~g~~~~~~~~---~~-----------~t~l~~a~~~~~------~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~ 566 (978)
++|++++..+. .| .||||+|+.... ...++.+++++|++.|++++.++..|.||||+|+.
T Consensus 159 ~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~ 238 (661)
T PHA02917 159 ENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIK 238 (661)
T ss_pred HcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHH
Confidence 99999986543 23 488888863110 12357788888888888888888888888888888
Q ss_pred cCCH--HHHHHHHhCCCCcc----CCCCCCCcHHHHHHH-------c--CCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q psy9384 567 EGHR--DVCEILLENEADQD----HIDKSGRTPLWAAAS-------M--GHASCVALLLFWGAYVDTIDAEGRTVLSVAA 631 (978)
Q Consensus 567 ~~~~--~iv~~Ll~~g~~~~----~~~~~~~t~L~~A~~-------~--~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~ 631 (978)
+|+. +++++|++ |++++ ..+..+.+|++.|+. + .+.+++++|++.|++ .+.+++++++
T Consensus 239 ~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~------~~~~~~~~~~ 311 (661)
T PHA02917 239 SSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP------HGIMCSIVPL 311 (661)
T ss_pred cCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC------CceeEeeecc
Confidence 8874 68888874 76654 234456677777763 1 167888888888874 3456677777
Q ss_pred HcCCHHHHHHHHHC-CCccccccCCCCCCCCCccccCCCCchHHH---HHHHcCC--HHHHHHHHhCCCCCCCCCCCCCc
Q psy9384 632 AQGNIDVVNQLLDR-GMILGCLAGGRQTGSLDEQHRDNCGWTPLH---YAAIEGH--EEVCRALLEAGAKVDQVDNDGRA 705 (978)
Q Consensus 632 ~~~~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~---~A~~~~~--~~~v~~Ll~~g~~~~~~d~~g~t 705 (978)
..++.+++++++.. + +.+++| .++..|. .+++++|+++|++++..+..|.+
T Consensus 312 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~ 368 (661)
T PHA02917 312 WRNDKETISLILKTMN-----------------------SDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYF 368 (661)
T ss_pred cccchHHHHHHHHHhc-----------------------hHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccc
Confidence 88888888888742 3 223434 3344555 55888888888888888877877
Q ss_pred HHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCC
Q psy9384 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTN 785 (978)
Q Consensus 706 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~ 785 (978)
+. ...+.++++.|+.+.|++++..+.+|.||||.|++. ..++.+...+.. .+|
T Consensus 369 ~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~---~~~~~~~~~~~~----~~~---------------- 421 (661)
T PHA02917 369 RN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKS---NYGCYNFYTYTY----KKG---------------- 421 (661)
T ss_pred hh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHh---cccchhhhhhhh----hhc----------------
Confidence 43 355677777777755777777677788888888732 122233332222 222
Q ss_pred ccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhh
Q psy9384 786 PHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATD 865 (978)
Q Consensus 786 t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~ 865 (978)
... .+...+..+ ++++|+++ |+++|.+|..|
T Consensus 422 --------------------------~~~----~~~~~~~~~---~v~~Ll~~-GAdIN~kd~~G--------------- 452 (661)
T PHA02917 422 --------------------------LCD----MSYACPILS---TINICLPY-LKDINMIDKRG--------------- 452 (661)
T ss_pred --------------------------cch----hhhhhhhHH---HHHHHHHC-CCCCCCCCCCC---------------
Confidence 111 112223455 66777777 66666655544
Q ss_pred hccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHH-cChHHHHHHHHHcCCCCcc
Q psy9384 866 EHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAK-SGHETVLRLLKQYADDSEY 944 (978)
Q Consensus 866 ~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~-~~~~~~v~~L~~~g~~~~~ 944 (978)
.||||+|+..++.+++++|+++|+++|.+|..|.|||++|+. .++.+++++|+++|++.+.
T Consensus 453 ------------------~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~ 514 (661)
T PHA02917 453 ------------------ETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDC 514 (661)
T ss_pred ------------------cCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhH
Confidence 778888888888899999999999999888889999999885 6788899999998888875
Q ss_pred c
Q psy9384 945 F 945 (978)
Q Consensus 945 ~ 945 (978)
.
T Consensus 515 i 515 (661)
T PHA02917 515 V 515 (661)
T ss_pred H
Confidence 3
No 6
>PHA02917 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=429.66 Aligned_cols=445 Identities=14% Similarity=0.091 Sum_probs=313.1
Q ss_pred HHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH----HHHHH
Q psy9384 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR----DVCEI 575 (978)
Q Consensus 500 ~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~----~iv~~ 575 (978)
+.++.|+..|..++..+.+|+||||+|+. +...++.+++++|++.|++++..+..|.||||.|+..|+. ++++.
T Consensus 13 ~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~--~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~ 90 (661)
T PHA02917 13 DELKQMLRDRDPNDTRNQFKNNALHAYLF--NEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMA 90 (661)
T ss_pred HHHHHHHhccCcccccCCCCCcHHHHHHH--hhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence 34445555555555445555555555431 0123445555555555555555555566666666665553 33455
Q ss_pred HHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHHHCCCcccccc
Q psy9384 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA--AQGNIDVVNQLLDRGMILGCLA 653 (978)
Q Consensus 576 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~--~~~~~~iv~~Ll~~~~~~~~~~ 653 (978)
|++.+...+..+. ..+++.|+.+++.+++++|+++|++++..+..|.||||.++ ..|+.+++++|+++|++++...
T Consensus 91 Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d 168 (661)
T PHA02917 91 LLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED 168 (661)
T ss_pred HHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence 5554332232221 24555666666777777777777777777777777776433 3567777777777774332110
Q ss_pred CCCCCCCCCccccCCCCchHHHHHHH-----------cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH--HHHH
Q psy9384 654 GGRQTGSLDEQHRDNCGWTPLHYAAI-----------EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY--HLVE 720 (978)
Q Consensus 654 ~~~~~~~~~~~~~~~~g~t~L~~A~~-----------~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--~iv~ 720 (978)
.....+..........+.||||+|+. .++.+++++|+++|+++|..|..|.||||+|+.+|+. ++|+
T Consensus 169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk 248 (661)
T PHA02917 169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVK 248 (661)
T ss_pred cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence 00000000011122345699999986 4689999999999999999999999999999999985 7999
Q ss_pred HHHhhcCCCCc----CCCCCCCcHHHHHHh--cc--cchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHH
Q psy9384 721 MFLEQYEANVN----QKSHDGRTALRVNMK--NV--TKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQE 792 (978)
Q Consensus 721 ~Ll~~~~~~~~----~~~~~g~t~L~~a~~--~~--~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~ 792 (978)
+|++ |++++ ..+..|.+|+++|+. +. .....+.+++++|+ +.| ++ .+.++++.++
T Consensus 249 ~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li----~~G-----a~------~~~~~~~~~~ 311 (661)
T PHA02917 249 LLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFL----ENG-----KP------HGIMCSIVPL 311 (661)
T ss_pred HHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHH----hCC-----CC------CceeEeeecc
Confidence 9974 88775 356678888888882 11 00134889999999 999 53 3567889999
Q ss_pred hhchHHHHHHHHHhcccccchhhhhhh-hhhhcc--cccccchhhhcccCCCcccccccccccccccccc-hhhhhhh-c
Q psy9384 793 YKKRLHILRKIISIANNEHIILFHHSF-SEWLLD--VKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA-VPSATDE-H 867 (978)
Q Consensus 793 ~~g~~~i~~~l~~~~~~~~~t~l~~~~-A~~~g~--~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~-~v~~L~~-~ 867 (978)
..+..++++++++. ..+.+++++.. ++..|. .+ ++++|++. |++++.++..|.++...... ++++|+. .
T Consensus 312 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~~~---~v~~Ll~~-GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ 385 (661)
T PHA02917 312 WRNDKETISLILKT--MNSDVLQHILIEYMTFGDIDIP---LVECMLEY-GAVVNKEAIHGYFRNINIDSYTMKYLLKKE 385 (661)
T ss_pred cccchHHHHHHHHH--hchHHHHHHHHHHHHcCCCcHH---HHHHHHHc-CCCCCCCCccccchhhcCCHHHHHHHHHhc
Confidence 99999999999863 23445555222 334554 56 99999999 99999999999987532222 7777776 6
Q ss_pred cCCchhhhhhhCCCCCCchHHHHHHhC-----------------------CHHHHHHHHHcCCCCCCCcccCccHHHHHH
Q psy9384 868 FSRDTHMRIILGSSKVGEKISIAAQEG-----------------------HEDCVRLLLHYGADPKHSDHCGRNAFRVAA 924 (978)
Q Consensus 868 g~~~~~~~~~~g~~~~~t~L~~A~~~g-----------------------~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~ 924 (978)
|++++..+ ..| .||||.|++.+ ..++|++|+++|||+|.+|..|.||||+|+
T Consensus 386 ga~~~~~~-~~G----~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa 460 (661)
T PHA02917 386 GGDAVNHL-DDG----EIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAV 460 (661)
T ss_pred CCCccccC-CCC----CChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 99888877 679 99999997543 367889999999999999999999999999
Q ss_pred HcChHHHHHHHHHcCCCCccc--ccchhhhhhhh-cChhHHHHHHHhhcCCCCCC
Q psy9384 925 KSGHETVLRLLKQYADDSEYF--VHYYYYYNSAK-SGHETVLRLLKQYADDIPVV 976 (978)
Q Consensus 925 ~~~~~~~v~~L~~~g~~~~~~--~~~~~l~~A~~-~~~~~~~~~L~~~~~~~~~~ 976 (978)
..++.+++++|+++|++++.. .|.|||+.|+. .++.+++++|++++.++.++
T Consensus 461 ~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~i 515 (661)
T PHA02917 461 RYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDCV 515 (661)
T ss_pred HcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhHH
Confidence 999999999999999999985 48999999996 78999999999999988644
No 7
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=399.18 Aligned_cols=357 Identities=21% Similarity=0.247 Sum_probs=315.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHH--hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAH--QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG 422 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g 422 (978)
-+++.++..++.+.++.+++. . ....+.++||.++. .++.++|++|+++|++++.+|..|.||||+|+..|
T Consensus 11 ~sl~~~~~~~n~~~~~~~l~~--~-----~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g 83 (446)
T PHA02946 11 LSLYAKYNSKNLDVFRNMLQA--I-----EPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKIN 83 (446)
T ss_pred HHHHHHHccCcHHHHHHHHhc--c-----CCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcC
Confidence 356788888999999999972 1 12234789998875 44788999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC--ceeeeeccchHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHcCCH
Q psy9384 423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNA-ADSEGRTALIASAYMGHA 499 (978)
Q Consensus 423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~--~~i~~~~~~~~vv~~Ll~~g~~~~~-~~~~~~t~L~~A~~~~~~ 499 (978)
+.+++++|+++|++++.++..|.||||+|+..++ .++ +++|+++|++++. .+..|.|||+ |+..++.
T Consensus 84 ~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~---------v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~ 153 (446)
T PHA02946 84 NNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIER---------INLLVQYGAKINNSVDEEGCGPLL-ACTDPSE 153 (446)
T ss_pred CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHH---------HHHHHHcCCCcccccCCCCCcHHH-HHHCCCh
Confidence 9999999999999999999999999999987664 455 9999999999995 5888999997 6667999
Q ss_pred HHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHH
Q psy9384 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG--HRDVCEILL 577 (978)
Q Consensus 500 ~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~--~~~iv~~Ll 577 (978)
+++++|+++|++++..+..|+||||.|+.. ..+..+++++|++.|++++.++..|.||||+|+..+ +.+++++|+
T Consensus 154 ~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~---~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl 230 (446)
T PHA02946 154 RVFKKIMSIGFEARIVDKFGKNHIHRHLMS---DNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL 230 (446)
T ss_pred HHHHHHHhccccccccCCCCCCHHHHHHHh---cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 999999999999999999999999998742 455678999999999999999999999999999986 789999998
Q ss_pred hCCCCccCCCCCCCcHHHHHHHcCC-HHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCC
Q psy9384 578 ENEADQDHIDKSGRTPLWAAASMGH-ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR 656 (978)
Q Consensus 578 ~~g~~~~~~~~~~~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~ 656 (978)
+ |++++..+..|.||||+|+..++ .++++.|+++|...+ ++ .++.|+..+..++++.+.++|.
T Consensus 231 ~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-----~~-~~~~a~~~~~~~~~e~l~~~g~--------- 294 (446)
T PHA02946 231 P-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT-----DQ-TVNICIFYDRDDVLEIINDKGK--------- 294 (446)
T ss_pred c-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC-----Cc-HHHHHHHcCchHHHHHHHHcCc---------
Confidence 5 89999999999999999999988 589999999986543 23 3889999999999999998771
Q ss_pred CCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCC
Q psy9384 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736 (978)
Q Consensus 657 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~ 736 (978)
..|.||||+|+.+|+.+++++|+++|+ .|.||||+|+.+++.+++++|+.+ |++++.. ..
T Consensus 295 -----------~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~~-~~ 354 (446)
T PHA02946 295 -----------QYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFN-HFSVDSV-VN 354 (446)
T ss_pred -----------ccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHC-CCCCCCc-cc
Confidence 347799999999999999999999875 478999999999999999999998 9999986 68
Q ss_pred CCcHHHHHHhcccchhHHHHHHHHHH
Q psy9384 737 GRTALRVNMKNVTKLSFWYLLIQPLL 762 (978)
Q Consensus 737 g~t~L~~a~~~~~~~~~~~~~~~~Ll 762 (978)
|.||||+|+ ..++.++++.|+
T Consensus 355 G~t~l~~a~-----~~~~~~~~~~ll 375 (446)
T PHA02946 355 GHTCMSECV-----RLNNPVILSKLM 375 (446)
T ss_pred cccHHHHHH-----HcCCHHHHHHHH
Confidence 999999999 899999999999
No 8
>PHA02730 ankyrin-like protein; Provisional
Probab=100.00 E-value=4e-44 Score=394.68 Aligned_cols=382 Identities=19% Similarity=0.204 Sum_probs=316.1
Q ss_pred HHHHHHHHHhccCCCcc-ccCCCCCcHHHHHHHhC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHH
Q psy9384 356 INLLKTFLKSCEALDLE-LVDKHGQTALNVAAHQG---FVDAVQILLEAGANINHTDCEGWTPLRSASWGG--HSAVVKL 429 (978)
Q Consensus 356 ~~~v~~ll~~~~~~~~~-~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g--~~~iv~~ 429 (978)
...++..++.|. +++ ..|..|.||||+|+..| +.++|++|+++|++++.+|..|+||||+|+..+ +.|+|++
T Consensus 20 ~~~~~~~~~~~~--~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~ 97 (672)
T PHA02730 20 YKKIKLEIETCH--NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHL 97 (672)
T ss_pred HHHHHHHHHHhc--chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHH
Confidence 456777777433 444 78889999999999997 599999999999999999999999999999977 7999999
Q ss_pred HHhCCC--CCCcCCCCCCcHHHHHHh--cCCceeeeeccchHHHHHHHH-cCCCCcccC-----CCCCcHHHHHHHcCCH
Q psy9384 430 LLQSGA--DVNCSDMGGRTALRAAAW--GGHLEVTIVLGPLCVVKLLLA-AGAHVNAAD-----SEGRTALIASAYMGHA 499 (978)
Q Consensus 430 Ll~~g~--~~~~~~~~~~t~l~~A~~--~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~-----~~~~t~L~~A~~~~~~ 499 (978)
|+++|+ +++..+..+.+|++.++. +++.++ +++|+. .+++++... ..|.+|++.+...++.
T Consensus 98 Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~---------vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~ 168 (672)
T PHA02730 98 LISSYSNASNELTSNINDFDLYSYMSSDNIDLRL---------LKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRP 168 (672)
T ss_pred HHhcCCCCCcccccccCCchHHHHHHhcCCcHHH---------HHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCch
Confidence 999975 447777778899999988 777777 999996 667877653 3788999999999999
Q ss_pred HHHHHHHHcCCCCcc-------CCCCCC-Chhhhhhhc-cCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHHcC
Q psy9384 500 DIVSSILEYDADINQ-------QDNDGR-TALSVSALC-VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV--AAFEG 568 (978)
Q Consensus 500 ~~v~~Ll~~g~~~~~-------~~~~~~-t~l~~a~~~-~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~--a~~~~ 568 (978)
++|++|+++|++++. .+.... +.|++.++. ..+..+..+++++|+++|+++|.++..|.||||+ +...+
T Consensus 169 eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~ 248 (672)
T PHA02730 169 EVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTI 248 (672)
T ss_pred HHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcc
Confidence 999999999999951 222333 444434432 2246788999999999999999999999999995 55567
Q ss_pred CHHHHHHHHh--------------------------------CCCCccC--------------------CCCCCCc----
Q psy9384 569 HRDVCEILLE--------------------------------NEADQDH--------------------IDKSGRT---- 592 (978)
Q Consensus 569 ~~~iv~~Ll~--------------------------------~g~~~~~--------------------~~~~~~t---- 592 (978)
+.+++++|++ +|++... .+..|.+
T Consensus 249 ~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 328 (672)
T PHA02730 249 DIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYII 328 (672)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHH
Confidence 7999999999 6777644 3334433
Q ss_pred -----------------HHHHHHHcC---CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCc
Q psy9384 593 -----------------PLWAAASMG---HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN----IDVVNQLLDRGMI 648 (978)
Q Consensus 593 -----------------~L~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~----~~iv~~Ll~~~~~ 648 (978)
.|+.-...+ +.+++++|+++|++++.. ..|.||||+|+..++ .+++++|+++|+.
T Consensus 329 ~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~ 407 (672)
T PHA02730 329 DNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGH 407 (672)
T ss_pred HHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCC
Confidence 566666644 689999999999999975 789999999998875 8999999999832
Q ss_pred cccccCCCCCCCCCccccCCCCchHHHH---HHHcC---------CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH
Q psy9384 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHY---AAIEG---------HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716 (978)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~---A~~~~---------~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~ 716 (978)
.+++.++..|.||||. |...+ ..+++++|+.+|+++|.+|..|.||||+|+..++.
T Consensus 408 ------------~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~ 475 (672)
T PHA02730 408 ------------MAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNI 475 (672)
T ss_pred ------------ccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCH
Confidence 3688899999999984 33222 23579999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCcCCCC-CCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384 717 HLVEMFLEQYEANVNQKSH-DGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL 769 (978)
Q Consensus 717 ~iv~~Ll~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~ 769 (978)
+++++|+++ |++++.++. .|.||||+|+.. ..++.+++++|+ ++|
T Consensus 476 eive~LI~~-GAdIN~~d~~~g~TaL~~Aa~~---~~~~~eIv~~LL----s~g 521 (672)
T PHA02730 476 QFARRLLEY-GASVNTTSRSIINTAIQKSSYR---RENKTKLVDLLL----SYH 521 (672)
T ss_pred HHHHHHHHC-CCCCCCCCCcCCcCHHHHHHHh---hcCcHHHHHHHH----HcC
Confidence 999999997 999999997 599999999822 246899999999 999
No 9
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=391.82 Aligned_cols=361 Identities=19% Similarity=0.238 Sum_probs=317.1
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy9384 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569 (978)
Q Consensus 490 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 569 (978)
+..++..++.+.++.+++.... ..+.++||.++.. .....+++++|++.|++++.++..|.||||+|+..|+
T Consensus 13 l~~~~~~~n~~~~~~~l~~~~~-----~g~~~~Lh~~~~~---~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~ 84 (446)
T PHA02946 13 LYAKYNSKNLDVFRNMLQAIEP-----SGNYHILHAYCGI---KGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINN 84 (446)
T ss_pred HHHHHccCcHHHHHHHHhccCC-----CCCChHHHHHHHh---cCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCC
Confidence 5778888999999999975321 1235788876522 4567899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMG--HASCVALLLFWGAYVDT-IDAEGRTVLSVAAAQGNIDVVNQLLDRG 646 (978)
Q Consensus 570 ~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~~ 646 (978)
.+++++|+++|++++..+..|.||||+|+..+ ..+++++|+++|++++. .+..|.|||+ |+..++.+++++|++.|
T Consensus 85 ~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g 163 (446)
T PHA02946 85 NRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIG 163 (446)
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcc
Confidence 99999999999999999999999999998866 47999999999999995 6889999997 66779999999999999
Q ss_pred CccccccCCCCCCCCCccccCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCC--CHHHHHHH
Q psy9384 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG--HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG--HYHLVEMF 722 (978)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~--~~~iv~~L 722 (978)
.+++.++..|+||||+|+..+ +.+++++|+++|++++..|..|.||||+|+..+ +.+++++|
T Consensus 164 --------------ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lL 229 (446)
T PHA02946 164 --------------FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLL 229 (446)
T ss_pred --------------ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 788899999999999988755 479999999999999999999999999999986 88999999
Q ss_pred HhhcCCCCcCCCCCCCcHHHHHHhcccchhHH-HHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHH
Q psy9384 723 LEQYEANVNQKSHDGRTALRVNMKNVTKLSFW-YLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILR 801 (978)
Q Consensus 723 l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~ 801 (978)
++ |++++.+|..|.||||+|+ ..++ .+++++|+ ++| +..+ +.+ ++.|+..+..++++
T Consensus 230 l~--gadin~~d~~G~TpLh~A~-----~~~~~~~~~~~Ll----~~g-----~~~~-----~~~-~~~a~~~~~~~~~e 287 (446)
T PHA02946 230 LP--STDVNKQNKFGDSPLTLLI-----KTLSPAHLINKLL----STS-----NVIT-----DQT-VNICIFYDRDDVLE 287 (446)
T ss_pred Hc--CCCCCCCCCCCCCHHHHHH-----HhCChHHHHHHHH----hCC-----CCCC-----CcH-HHHHHHcCchHHHH
Confidence 85 8999999999999999999 6655 58999999 888 4433 333 78888889999999
Q ss_pred HHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhhhccCCchhhhhhhCCC
Q psy9384 802 KIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSS 881 (978)
Q Consensus 802 ~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~ 881 (978)
.+.+++...|.|||| +|+..|+.+ ++++|+++ |+ .|
T Consensus 288 ~l~~~g~~~~~TpLh--~Aa~~g~~e---ivk~Ll~~-~~------------------------------------~~-- 323 (446)
T PHA02946 288 IINDKGKQYDSTDFK--MAVEVGSIR---CVKYLLDN-DI------------------------------------IC-- 323 (446)
T ss_pred HHHHcCcccCCCHHH--HHHHcCCHH---HHHHHHHC-CC------------------------------------cc--
Confidence 999998888999999 999999999 99999988 42 23
Q ss_pred CCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCC
Q psy9384 882 KVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS 942 (978)
Q Consensus 882 ~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~ 942 (978)
.||||+|+..|+.++|++|+.+|+++|.. ..|.|||++|+++++.++++.|+.+..+.
T Consensus 324 --~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~~ 381 (446)
T PHA02946 324 --EDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPTS 381 (446)
T ss_pred --ccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCccH
Confidence 78999999999999999999999999986 58999999999999999999999955433
No 10
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=8.2e-43 Score=392.74 Aligned_cols=406 Identities=14% Similarity=0.132 Sum_probs=308.0
Q ss_pred HcCCHHHHHHHHHcC-CCCccC-CCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC--H
Q psy9384 495 YMGHADIVSSILEYD-ADINQQ-DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH--R 570 (978)
Q Consensus 495 ~~~~~~~v~~Ll~~g-~~~~~~-~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~--~ 570 (978)
+.++.+++++|+++| ++++.. +..|.||||.|+.. ..++.+++++|++.|++++.++..|.||||+|+..|+ .
T Consensus 151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n---~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~ 227 (764)
T PHA02716 151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGN---MYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCA 227 (764)
T ss_pred cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHh---ccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCH
Confidence 458889999999999 999988 88899999987521 3456899999999999999999999999999999985 4
Q ss_pred HHHHHHHhCCCCccCCCCCCCcHHHHHH---HcCCHHHHHHHHHCCCCCcccCCCCCcHHH---HHHHcCCHHHHHHHHH
Q psy9384 571 DVCEILLENEADQDHIDKSGRTPLWAAA---SMGHASCVALLLFWGAYVDTIDAEGRTVLS---VAAAQGNIDVVNQLLD 644 (978)
Q Consensus 571 ~iv~~Ll~~g~~~~~~~~~~~t~L~~A~---~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~---~A~~~~~~~iv~~Ll~ 644 (978)
+++++|+++|++++.++..|.||||.|+ .+++.++++.+++.+...... ....+++ .|+..|+.+++++|++
T Consensus 228 eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~--~~~~~L~~~i~AA~~g~leiVklLLe 305 (764)
T PHA02716 228 SVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK--NIPMILHSYITLARNIDISVVYSFLQ 305 (764)
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc--cchhhhHHHHHHHHcCCHHHHHHHHh
Confidence 8999999999999999999999999875 467889999998864332211 1122333 4788899999999999
Q ss_pred CCCccccccCCCCCCCCCccccCCCCchHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH----------
Q psy9384 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI--EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQ---------- 712 (978)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~---------- 712 (978)
+| .+++.+|..|+||||+|+. .++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 306 ~G--------------AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~ 371 (764)
T PHA02716 306 PG--------------VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDP 371 (764)
T ss_pred CC--------------CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccc
Confidence 99 7888889999999998764 467899999999999999999999999998865
Q ss_pred ----CCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccc
Q psy9384 713 ----DGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHI 788 (978)
Q Consensus 713 ----~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l 788 (978)
.++.+++++|+++ |++++.++..|.||||.++.... ..++.+++++|+ +.+ +.....+
T Consensus 372 ~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~a~-n~~~~dIvklLi----s~~-----~~~~~~~------- 433 (764)
T PHA02716 372 ETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICTAQ-NYMYYDIIDCLI----SDK-----VLNMVKH------- 433 (764)
T ss_pred cccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHHHH-hcChHHHHHHHH----hCc-----chhhhhh-------
Confidence 3688999999997 99999999999999984321000 345789999999 666 3322221
Q ss_pred hHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhhhcc
Q psy9384 789 SRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHF 868 (978)
Q Consensus 789 ~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g 868 (978)
+.++.++...+..+.. +| .++..++.+ ...++... .. .+ .++.+. ++..+..++
T Consensus 434 ---------~~~q~ll~~~d~~~~~-lh--h~~a~~~~~---~~~~~~~~-~~-~~------~~~~~~---v~~~~ii~~ 487 (764)
T PHA02716 434 ---------RILQDLLIRVDDTPCI-IH--HIIAKYNIP---TDLYTDEY-EP-YD------STKIHD---VYHCAIIER 487 (764)
T ss_pred ---------hhhhhhhhccCcchhh-HH--HHHHhcCcc---hhhhhhhh-hh-cc------ccccch---hhHHHHHhh
Confidence 1222233333322222 34 455555555 44444333 10 00 011111 344455667
Q ss_pred CCchhhhhhhCCCCCCchHHHHHHhCCHH-----HHHHHHHcCCCCCCCcccCccHHHHHHHcChH-----HHHHHHHHc
Q psy9384 869 SRDTHMRIILGSSKVGEKISIAAQEGHED-----CVRLLLHYGADPKHSDHCGRNAFRVAAKSGHE-----TVLRLLKQY 938 (978)
Q Consensus 869 ~~~~~~~~~~g~~~~~t~L~~A~~~g~~~-----iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-----~~v~~L~~~ 938 (978)
.+++..+ ..| .||||+|+..|+.+ ++++|++.|+|+|.+|..|.||||+|+++|+. ++|++|+++
T Consensus 488 ~nvN~~D-~~G----~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ 562 (764)
T PHA02716 488 YNNAVCE-TSG----MTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDK 562 (764)
T ss_pred ccccccC-CCC----CCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhc
Confidence 7788777 888 99999999998774 45999999999999999999999999999976 999999999
Q ss_pred CCCCcccccchhhhhhhhcChhHHHHHHHhhcCC
Q psy9384 939 ADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADD 972 (978)
Q Consensus 939 g~~~~~~~~~~~l~~A~~~~~~~~~~~L~~~~~~ 972 (978)
|++++.. .+..|..+++.+++++|..++.-
T Consensus 563 ga~~~~~----~l~~~~~~~~~~~~~ll~~~~~~ 592 (764)
T PHA02716 563 RPNVDIV----IIFLDKCYANGKFPSLLLSEDDI 592 (764)
T ss_pred CCCcchH----HHHHHhhhhhhHHHHHHHHcchh
Confidence 9998876 47889999999999999888753
No 11
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=1.3e-42 Score=391.18 Aligned_cols=428 Identities=19% Similarity=0.175 Sum_probs=328.3
Q ss_pred cccccchhHHHHHHHhhcccchhhhhccccCCCCCCCCCCcccccccCCCchHHH---HHH--HcCCHHHHHHHHHhccC
Q psy9384 294 KDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLH---KLC--AENNINLLKTFLKSCEA 368 (978)
Q Consensus 294 ~~lp~~l~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~---~a~--~~~~~~~v~~ll~~~~~ 368 (978)
+++|.+.+.+|..+++.-.... ..... ..| +..+.++++ .|+ ..++.+++++|++ .|
T Consensus 104 k~l~~~~~~~~~~~~~~~~~~~----~~~~~-~~~-----------~~~d~~~~~~y~~al~~~~v~leiVk~LLe--~G 165 (764)
T PHA02716 104 KSLVDQYKQFYKQIIKDNKSKT----ANHVF-DIP-----------NNGDMDILYTYFNSPNTRGIDLDLIKYMVD--VG 165 (764)
T ss_pred ccCchhHHHHHHHHHHcCCchh----hhhhh-cCC-----------CcccchHHHHHHhhhcccCCCHHHHHHHHH--CC
Confidence 5799999999988887431111 01100 011 111222222 332 4589999999999 78
Q ss_pred -CCcccc-CCCCCcHHHHHHH--hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCCCcCCC
Q psy9384 369 -LDLELV-DKHGQTALNVAAH--QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH--SAVVKLLLQSGADVNCSDM 442 (978)
Q Consensus 369 -~~~~~~-~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~--~~iv~~Ll~~g~~~~~~~~ 442 (978)
++++.. +..|.||||+|+. +++.+++++|++.|++++.+|..|.||||+|+..|+ .++|++|+++|++++.++.
T Consensus 166 ~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~ 245 (764)
T PHA02716 166 IVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV 245 (764)
T ss_pred CCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC
Confidence 899998 8999999999875 467999999999999999999999999999999995 5999999999999999999
Q ss_pred CCCcHHHHHH---hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHH---HHHHHcCCHHHHHHHHHcCCCCccCC
Q psy9384 443 GGRTALRAAA---WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL---IASAYMGHADIVSSILEYDADINQQD 516 (978)
Q Consensus 443 ~~~t~l~~A~---~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L---~~A~~~~~~~~v~~Ll~~g~~~~~~~ 516 (978)
.|.||||+|+ .+++.++ ++.|++.+...... ....++ ..|+..|+.+++++|+++|++++.++
T Consensus 246 ~G~TPLh~Ai~~a~n~~~EI---------vkiLie~~d~n~~~--~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD 314 (764)
T PHA02716 246 NGMSPIMTYIINIDNINPEI---------TNIYIESLDGNKVK--NIPMILHSYITLARNIDISVVYSFLQPGVKLHYKD 314 (764)
T ss_pred CCCCHHHHHHHhhhccCHHH---------HHHHHHhccccccc--cchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccC
Confidence 9999999886 4567777 99998865332111 112233 34788999999999999999999999
Q ss_pred CCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--------------cCCHHHHHHHHhCCCC
Q psy9384 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAF--------------EGHRDVCEILLENEAD 582 (978)
Q Consensus 517 ~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~--------------~~~~~iv~~Ll~~g~~ 582 (978)
..|+||||+|+.. ..++.+++++|++.|++++.++..|.||||.|+. .++.+++++|+++|++
T Consensus 315 ~~G~TPLH~Aaa~---~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD 391 (764)
T PHA02716 315 SAGRTCLHQYILR---HNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD 391 (764)
T ss_pred CCCCCHHHHHHHH---hCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC
Confidence 9999999987632 3457899999999999999999999999999875 3689999999999999
Q ss_pred ccCCCCCCCcHHHH----HHHcCCHHHHHHHHHCCCCCcccC--------CCCCc--HHHHHHHcCCHHHHHHHHHCCCc
Q psy9384 583 QDHIDKSGRTPLWA----AASMGHASCVALLLFWGAYVDTID--------AEGRT--VLSVAAAQGNIDVVNQLLDRGMI 648 (978)
Q Consensus 583 ~~~~~~~~~t~L~~----A~~~~~~~~v~~Ll~~g~~~~~~~--------~~~~t--~L~~A~~~~~~~iv~~Ll~~~~~ 648 (978)
++..+..|.||||. |...++.+++++|++.|+.....+ ..+.+ .+|.++..++.+...++.+....
T Consensus 392 In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~ 471 (764)
T PHA02716 392 ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPY 471 (764)
T ss_pred CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhc
Confidence 99999999999994 333578999999999876532221 12223 35666655554444333322110
Q ss_pred cccccC----CCCCCCCCccccCCCCchHHHHHHHcCCH-----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH---
Q psy9384 649 LGCLAG----GRQTGSLDEQHRDNCGWTPLHYAAIEGHE-----EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY--- 716 (978)
Q Consensus 649 ~~~~~~----~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-----~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--- 716 (978)
...... .......+.+..+..|+||||+|+..|+. +++++|++.|+++|.+|..|.||||+|+++|+.
T Consensus 472 ~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~ 551 (764)
T PHA02716 472 DSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGH 551 (764)
T ss_pred cccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCcccc
Confidence 000000 00011156788899999999999999876 556999999999999999999999999999977
Q ss_pred --HHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384 717 --HLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL 769 (978)
Q Consensus 717 --~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~ 769 (978)
++|+.|+++ |++++.. .++.|. ...+.+++.+|. .++
T Consensus 552 ~~eIvk~LL~~-ga~~~~~------~l~~~~-----~~~~~~~~~ll~----~~~ 590 (764)
T PHA02716 552 QWYIVKNILDK-RPNVDIV------IIFLDK-----CYANGKFPSLLL----SED 590 (764)
T ss_pred HHHHHHHHHhc-CCCcchH------HHHHHh-----hhhhhHHHHHHH----Hcc
Confidence 999999997 9888776 578887 778888888888 766
No 12
>PHA02730 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=382.25 Aligned_cols=364 Identities=18% Similarity=0.178 Sum_probs=308.9
Q ss_pred cccCCCchHHHHHHHcC---CHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhC--CHHHHHHHHHCCCC--CCCCCCC
Q psy9384 338 MFDSKNQSVLHKLCAEN---NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG--FVDAVQILLEAGAN--INHTDCE 410 (978)
Q Consensus 338 ~~~~~~~~~l~~a~~~~---~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g--~~~~v~~Ll~~g~~--~~~~~~~ 410 (978)
..|..|.||||+|+..| +.++|+.|++ .|++++.+|..|+||||+|+..+ +.++|++|++.|++ ++..+..
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs--~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~ 113 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLS--RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNI 113 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHh--CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccccc
Confidence 56788999999999997 5999999999 99999999999999999999976 79999999999664 4778877
Q ss_pred CCcHHHHHHH--cCCHHHHHHHHh-CCCCCCcCCC-----CCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcc-
Q psy9384 411 GWTPLRSASW--GGHSAVVKLLLQ-SGADVNCSDM-----GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA- 481 (978)
Q Consensus 411 ~~t~L~~A~~--~g~~~iv~~Ll~-~g~~~~~~~~-----~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~- 481 (978)
+.+|||.++. +++.++|++|++ .+++++...+ .|.+|++++...++.++ |++|+++|++++.
T Consensus 114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eI---------vklLi~~g~~v~g~ 184 (672)
T PHA02730 114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEV---------LLWLLKSECYSTGY 184 (672)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHH---------HHHHHHcCCccccc
Confidence 8899999888 999999999997 6678776533 78899999999999999 9999999999952
Q ss_pred ------cCCCCC-cHHHHH------HHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHh---
Q psy9384 482 ------ADSEGR-TALIAS------AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE--- 545 (978)
Q Consensus 482 ------~~~~~~-t~L~~A------~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~--- 545 (978)
.+.... +.|+++ ..+++.+++++|+++|++++.++..|.||||++.. ...++.+++++|++
T Consensus 185 ~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~---~~~~~~eiv~~Li~~~~ 261 (672)
T PHA02730 185 VFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWS---CSTIDIEIVKLLIKDVD 261 (672)
T ss_pred ccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---cCcccHHHHHHHHhccc
Confidence 233344 344422 46679999999999999999999999999996321 15667999999999
Q ss_pred -----------------------------CCCCCCC--------------------CCCCCCC-----------------
Q psy9384 546 -----------------------------KGAKVDH--------------------EDREGMT----------------- 559 (978)
Q Consensus 546 -----------------------------~g~~~~~--------------------~~~~~~t----------------- 559 (978)
+|+|... .+..|.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~ 341 (672)
T PHA02730 262 TCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDES 341 (672)
T ss_pred cccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchh
Confidence 6777644 3444444
Q ss_pred ----HHHHHHHcC---CHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC----HHHHHHHHHCCC--CCcccCCCCCcH
Q psy9384 560 ----PLLVAAFEG---HRDVCEILLENEADQDHIDKSGRTPLWAAASMGH----ASCVALLLFWGA--YVDTIDAEGRTV 626 (978)
Q Consensus 560 ----~L~~a~~~~---~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~----~~~v~~Ll~~g~--~~~~~~~~~~t~ 626 (978)
.|+.-...+ +.+++++|+++|++++.. ..|.||||.|+..++ .+++++|+++|+ +++..+..|.||
T Consensus 342 ~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~ 420 (672)
T PHA02730 342 IVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLC 420 (672)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCch
Confidence 667677755 599999999999999975 789999999988774 899999999997 588889999999
Q ss_pred HHH---HHHcC---------CHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCC
Q psy9384 627 LSV---AAAQG---------NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694 (978)
Q Consensus 627 L~~---A~~~~---------~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 694 (978)
||. |...+ ..+++++|+++| +++|.+|..|.||||+|+..++.+++++|+++|+
T Consensus 421 Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G--------------ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GA 486 (672)
T PHA02730 421 MYGLILSRFNNCGYHCYETILIDVFDILSKYM--------------DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGA 486 (672)
T ss_pred HhHHHHHHhccccccccchhHHHHHHHHHhcc--------------cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCC
Confidence 984 33222 236799999999 8899999999999999999999999999999999
Q ss_pred CCCCCCC-CCCcHHHHHHHC--CCHHHHHHHHhhcCCCCc
Q psy9384 695 KVDQVDN-DGRAPLILAAQD--GHYHLVEMFLEQYEANVN 731 (978)
Q Consensus 695 ~~~~~d~-~g~t~L~~A~~~--~~~~iv~~Ll~~~~~~~~ 731 (978)
++|..+. .|.||||+|+.. ++.++++.|+++ |++++
T Consensus 487 dIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~-ga~i~ 525 (672)
T PHA02730 487 SVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY-HPTLE 525 (672)
T ss_pred CCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc-CCCHH
Confidence 9999997 599999999974 789999999997 77764
No 13
>KOG0510|consensus
Probab=100.00 E-value=4.6e-42 Score=365.76 Aligned_cols=338 Identities=29% Similarity=0.398 Sum_probs=240.8
Q ss_pred cccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384 372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451 (978)
Q Consensus 372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A 451 (978)
...+..|.|++|.|+..+.. +++-+...+.|..++||||+|+.....+.++.|++.|+++...+..+.+|+|+|
T Consensus 55 ~~~~~~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A 128 (929)
T KOG0510|consen 55 PGKRAFGDTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLA 128 (929)
T ss_pred chhhhhchhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhc
Confidence 34444555555555555543 222233344555555555555555555555555555555555555555555555
Q ss_pred HhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccC
Q psy9384 452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531 (978)
Q Consensus 452 ~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 531 (978)
+..+..+. .+.|+++|+++|..++.+.||||.|+..++.|..+.|++.|+++...+.++..|+|.|+
T Consensus 129 ~~~~~~s~---------L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa---- 195 (929)
T KOG0510|consen 129 ADSGNYSC---------LKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAA---- 195 (929)
T ss_pred cccchHHH---------HHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHH----
Confidence 55555555 55555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCChHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------------ccCCCCCCC
Q psy9384 532 SSDGYAKVVSILLE-----KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD---------------QDHIDKSGR 591 (978)
Q Consensus 532 ~~~~~~~~v~~Ll~-----~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~---------------~~~~~~~~~ 591 (978)
..+..+.+++.+. .+..+|..+..+.+|||.|+..|++++++.++++|.. ++..|..|.
T Consensus 196 -~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~ 274 (929)
T KOG0510|consen 196 -RSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGC 274 (929)
T ss_pred -HhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCC
Confidence 4555555555555 4445555555566666666666666666666655432 244577889
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCccccccCCCCCCCCCccccCCCC
Q psy9384 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD-RGMILGCLAGGRQTGSLDEQHRDNCG 670 (978)
Q Consensus 592 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~g 670 (978)
||||+|++.|+++.++.|+..|++++.++.++.||||.|+.+|+++.++-|++ .+. ...|..|..|
T Consensus 275 tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~-------------rllne~D~~g 341 (929)
T KOG0510|consen 275 TPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDT-------------RLLNESDLHG 341 (929)
T ss_pred chHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCc-------------cccccccccC
Confidence 99999999999999999999999999999999999999999999999999998 332 5677888999
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCC---CCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHH
Q psy9384 671 WTPLHYAAIEGHEEVCRALLEAGAKVD---QVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743 (978)
Q Consensus 671 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~ 743 (978)
+||||.|+++|+..+++.|++.|+... ..|.+|.||||.|++.|+..+|++|+.+ |++++.++..|.+++++
T Consensus 342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~~g~SA~~~ 416 (929)
T KOG0510|consen 342 MTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNKKGKSAFDT 416 (929)
T ss_pred CCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccccccccccc
Confidence 999999999999999999999999887 5589999999999999999999999998 99999999999999885
No 14
>KOG0510|consensus
Probab=100.00 E-value=6e-41 Score=357.26 Aligned_cols=387 Identities=23% Similarity=0.252 Sum_probs=314.1
Q ss_pred ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q psy9384 371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA 450 (978)
Q Consensus 371 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~ 450 (978)
++....+-.++.+.+... |..+++++....++.++..|.|++|.|+..+.. ++.-+..+..|..+++|+|+
T Consensus 24 ~~~~~~d~~~~~~~~~~d---D~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~ 94 (929)
T KOG0510|consen 24 IRQPVADLDSQALADTLD---DRHTLILEKNSSTPGKRAFGDTELHHASARNYI------LSKLAISYAKDSADNTPLHA 94 (929)
T ss_pred hhhhhHHHhHHHHHhhHH---HHHHHHHHhccccchhhhhchhHHHHHHhhcch------hhhhhhhhhhhcccCchhHH
Confidence 333334444555555544 778888888777788888889999988887765 33334455667778888888
Q ss_pred HHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhcc
Q psy9384 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530 (978)
Q Consensus 451 A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 530 (978)
|++....+. +++|++.|++.+..+..+.+|+|+|+..++.+.++.|+++|++++..+..+.||||.|+
T Consensus 95 a~~~~~~~~---------i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~--- 162 (929)
T KOG0510|consen 95 AVEYNQGDK---------IQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAA--- 162 (929)
T ss_pred HhhcchHHH---------HHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHH---
Confidence 888888888 88888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-----CCCCccCCCCCCCcHHHHHHHcCCHHH
Q psy9384 531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE-----NEADQDHIDKSGRTPLWAAASMGHASC 605 (978)
Q Consensus 531 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~-----~g~~~~~~~~~~~t~L~~A~~~~~~~~ 605 (978)
..++.|..+.|++.|+++...+..|..|+|.|++.|..+..+..+. .+..+|..+..+.+|||.|+..|+.++
T Consensus 163 --~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~ 240 (929)
T KOG0510|consen 163 --RKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEM 240 (929)
T ss_pred --hcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHH
Confidence 6677777788888888888888888888888888888888888887 566778778888888888888888888
Q ss_pred HHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHH
Q psy9384 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEV 685 (978)
Q Consensus 606 v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 685 (978)
++.+++.|.....+..+ ...-.+.| +|..|..|.||||+|++.|+++.
T Consensus 241 lk~~L~n~~~~a~~~~~------------~~~q~kel--------------------v~~~d~dg~tpLH~a~r~G~~~s 288 (929)
T KOG0510|consen 241 LKMCLQNGKKIADVQLD------------AMQQEKEL--------------------VNDEDNDGCTPLHYAARQGGPES 288 (929)
T ss_pred HHHHHhCccccchhhhH------------HHHHHHHH--------------------hhcccccCCchHHHHHHcCChhH
Confidence 88888877644322211 11122222 34578899999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHh-hcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHH
Q psy9384 686 CRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE-QYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNI 764 (978)
Q Consensus 686 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~ 764 (978)
++.|+..|++++.++.++.||||.|+.+|+.+.|+.|++ ......+..|..|.||||.|+ .+||..+++.|+
T Consensus 289 vd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa-----~~gH~~v~qlLl-- 361 (929)
T KOG0510|consen 289 VDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA-----KSGHDRVVQLLL-- 361 (929)
T ss_pred HHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh-----hcCHHHHHHHHH--
Confidence 999999999999999999999999999999999999999 445567888999999999999 999999999999
Q ss_pred HHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCccc
Q psy9384 765 ILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIH 844 (978)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~ 844 (978)
..| +...... ..|.+|.|+|| +|+..|+.. +|++|+.+ |++++
T Consensus 362 --~~G-----A~~~~~~------------------------e~D~dg~TaLH--~Aa~~g~~~---av~~Li~~-Ga~I~ 404 (929)
T KOG0510|consen 362 --NKG-----ALFLNMS------------------------EADSDGNTALH--LAAKYGNTS---AVQKLISH-GADIG 404 (929)
T ss_pred --hcC-----hhhhccc------------------------ccccCCchhhh--HHHHhccHH---HHHHHHHc-CCcee
Confidence 888 5554300 11678889999 999999999 99999999 99999
Q ss_pred cccccccccccc
Q psy9384 845 AVDLSQRRQTSS 856 (978)
Q Consensus 845 ~~~~~~~tpl~~ 856 (978)
.++..|.|+++.
T Consensus 405 ~~n~~g~SA~~~ 416 (929)
T KOG0510|consen 405 VKNKKGKSAFDT 416 (929)
T ss_pred eccccccccccc
Confidence 999999999984
No 15
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=360.80 Aligned_cols=335 Identities=24% Similarity=0.325 Sum_probs=262.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384 346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA 425 (978)
Q Consensus 346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~ 425 (978)
.|..|+..|+++.++.+++. .+..++..+..|.||||.|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+
T Consensus 4 ~l~~ai~~gd~~~v~~ll~~-~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~ 82 (434)
T PHA02874 4 DLRMCIYSGDIEAIEKIIKN-KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD 82 (434)
T ss_pred HHHHHHhcCCHHHHHHHHHc-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 57889999999999999974 45557777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505 (978)
Q Consensus 426 iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~L 505 (978)
++++|+++|+++... +......++ +++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus 83 iv~~Ll~~g~~~~~~----------~~~~~~~~~---------i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~L 143 (434)
T PHA02874 83 IIKLLIDNGVDTSIL----------PIPCIEKDM---------IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKML 143 (434)
T ss_pred HHHHHHHCCCCCCcc----------hhccCCHHH---------HHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHH
Confidence 999999998876432 122233445 8899999999988888899999999999999999999
Q ss_pred HHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccC
Q psy9384 506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585 (978)
Q Consensus 506 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~ 585 (978)
+++|++++.++..|.||||+|+ ..++.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.
T Consensus 144 l~~gad~n~~d~~g~tpLh~A~-----~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~ 218 (434)
T PHA02874 144 FEYGADVNIEDDNGCYPIHIAI-----KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN 218 (434)
T ss_pred HhCCCCCCCcCCCCCCHHHHHH-----HCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcC
Confidence 9998888888888888888887 66778888888888888887778888888888888888888888888888877
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHCCCccccccCCCCCCCCCcc
Q psy9384 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG-NIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664 (978)
Q Consensus 586 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~-~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~ 664 (978)
.+..|.||||.|+..+. +.+.+|+ .|++++..+..|.||||+|+..+ +.+++++|+++| .+++
T Consensus 219 ~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g--------------ad~n 282 (434)
T PHA02874 219 KCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHK--------------ADIS 282 (434)
T ss_pred CCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCc--------------CCCC
Confidence 77778888888877654 4555554 56777777777888888877764 677788888777 6777
Q ss_pred ccCCCCchHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCC-CcHHHHHHHCCCHHHHHH
Q psy9384 665 HRDNCGWTPLHYAAIEG-HEEVCRALLEAGAKVDQVDNDG-RAPLILAAQDGHYHLVEM 721 (978)
Q Consensus 665 ~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~d~~g-~t~L~~A~~~~~~~iv~~ 721 (978)
.++..|.|||+.|++.+ ..++++.|+.+++.++..+..+ .+++..+...++.++.++
T Consensus 283 ~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 341 (434)
T PHA02874 283 IKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDF 341 (434)
T ss_pred CCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccchHHHH
Confidence 77777788888777766 5667777777777666555443 334555444444444333
No 16
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=357.16 Aligned_cols=324 Identities=25% Similarity=0.328 Sum_probs=291.4
Q ss_pred HHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384 381 ALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459 (978)
Q Consensus 381 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i 459 (978)
.|..|+..|+.++++.|++. +..++..+..|.||||.|+..|+.++|++|+++|++++..+..+.|||+.|+..|+.++
T Consensus 4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~i 83 (434)
T PHA02874 4 DLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI 83 (434)
T ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 58899999999999999975 55578888899999999999999999999999999999999999999999999999999
Q ss_pred eeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHH
Q psy9384 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKV 539 (978)
Q Consensus 460 ~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ 539 (978)
+++|+++|+++... +......+++++|++.|++++.++..|.||||+|+ ..++.++
T Consensus 84 ---------v~~Ll~~g~~~~~~----------~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~-----~~~~~~~ 139 (434)
T PHA02874 84 ---------IKLLIDNGVDTSIL----------PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAI-----KKGDLES 139 (434)
T ss_pred ---------HHHHHHCCCCCCcc----------hhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHH-----HCCCHHH
Confidence 99999999876432 23446789999999999999999999999999999 7899999
Q ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q psy9384 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTI 619 (978)
Q Consensus 540 v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 619 (978)
+++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.|++++..
T Consensus 140 v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~ 219 (434)
T PHA02874 140 IKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219 (434)
T ss_pred HHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcC-CHHHHHHHHhCCCCCCC
Q psy9384 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG-HEEVCRALLEAGAKVDQ 698 (978)
Q Consensus 620 ~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~ 698 (978)
+..|.||||.|+..+. +.+++|+ .| .+++.++..|+||||+|+..+ +.+++++|+++|++++.
T Consensus 220 ~~~g~TpL~~A~~~~~-~~i~~Ll-~~--------------~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~ 283 (434)
T PHA02874 220 CKNGFTPLHNAIIHNR-SAIELLI-NN--------------ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI 283 (434)
T ss_pred CCCCCCHHHHHHHCCh-HHHHHHH-cC--------------CCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCC
Confidence 9999999999998765 5677776 45 678889999999999999875 79999999999999999
Q ss_pred CCCCCCcHHHHHHHCC-CHHHHHHHHhhcCCCCcCCCCCC-CcHHHHHH
Q psy9384 699 VDNDGRAPLILAAQDG-HYHLVEMFLEQYEANVNQKSHDG-RTALRVNM 745 (978)
Q Consensus 699 ~d~~g~t~L~~A~~~~-~~~iv~~Ll~~~~~~~~~~~~~g-~t~L~~a~ 745 (978)
.|..|.|||++|++.+ ..++++.|+.. +..++..+..+ .+++..+.
T Consensus 284 ~d~~g~TpL~~A~~~~~~~~~ik~ll~~-~~~~~~~~~~~~~~~~~~~~ 331 (434)
T PHA02874 284 KDNKGENPIDTAFKYINKDPVIKDIIAN-AVLIKEADKLKDSDFLEHIE 331 (434)
T ss_pred CCCCCCCHHHHHHHhCCccHHHHHHHHh-cCchhhccccchhHHHHHHH
Confidence 9999999999999987 67899999987 77666555444 33444444
No 17
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=356.00 Aligned_cols=287 Identities=28% Similarity=0.366 Sum_probs=153.4
Q ss_pred HHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHH
Q psy9384 350 LCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG---FVDAVQILLEAGANINHTDCEGWTPLRSASWGG-HSA 425 (978)
Q Consensus 350 a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g-~~~ 425 (978)
++..++++++++|++ .|++++..+..|.||||+|+..| +.+++++|++.|++++.++..|.||||+|+..| +.+
T Consensus 21 ~~~~~~~~~v~~Ll~--~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~ 98 (471)
T PHA03095 21 NASNVTVEEVRRLLA--AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98 (471)
T ss_pred cCCCCCHHHHHHHHH--cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHH
Confidence 344555555555555 55555555555555555555555 555555555555555555555555555555555 355
Q ss_pred HHHHHHhCCCCCCcCCCCCCcHHHHHH--hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHH
Q psy9384 426 VVKLLLQSGADVNCSDMGGRTALRAAA--WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG--HADI 501 (978)
Q Consensus 426 iv~~Ll~~g~~~~~~~~~~~t~l~~A~--~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~--~~~~ 501 (978)
++++|+++|++++..+..|.||||+|+ ..++.++ +++|+++|++++..+..|.||||.|+..+ +.++
T Consensus 99 iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~i---------v~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~i 169 (471)
T PHA03095 99 VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKV---------IRLLLRKGADVNALDLYGMTPLAVLLKSRNANVEL 169 (471)
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHH---------HHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHH
Confidence 555555555555555555555555555 2233344 55555555555555555555555555443 3445
Q ss_pred HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy9384 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581 (978)
Q Consensus 502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~ 581 (978)
+++|+++|++++..+..|.||||.++.. .. ++.++++.|+++|+
T Consensus 170 v~~Ll~~g~~~~~~d~~g~t~Lh~~~~~---~~---------------------------------~~~~i~~~Ll~~g~ 213 (471)
T PHA03095 170 LRLLIDAGADVYAVDDRFRSLLHHHLQS---FK---------------------------------PRARIVRELIRAGC 213 (471)
T ss_pred HHHHHHcCCCCcccCCCCCCHHHHHHHH---CC---------------------------------CcHHHHHHHHHcCC
Confidence 5555555555444444444444444321 12 34445555555555
Q ss_pred CccCCCCCCCcHHHHHHHcCCH--HHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCC
Q psy9384 582 DQDHIDKSGRTPLWAAASMGHA--SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659 (978)
Q Consensus 582 ~~~~~~~~~~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~ 659 (978)
+++..+..|.||||.|+..++. .+++.|++.|++++..+..|.||||+|+..|+.+++++|+++|
T Consensus 214 ~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g------------- 280 (471)
T PHA03095 214 DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALG------------- 280 (471)
T ss_pred CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-------------
Confidence 5555555555555555554432 3445555555555555555555555555555555555555555
Q ss_pred CCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy9384 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD 697 (978)
Q Consensus 660 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 697 (978)
++++.++..|.||||+|+..|+.++++.|++.+++++
T Consensus 281 -ad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~ 317 (471)
T PHA03095 281 -ADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE 317 (471)
T ss_pred -CCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence 4555555555555555555555555555555555543
No 18
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=351.94 Aligned_cols=273 Identities=27% Similarity=0.350 Sum_probs=246.1
Q ss_pred cccccccCCCchHHHHHHHcC---CHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhC-CHHHHHHHHHCCCCCCCCCC
Q psy9384 334 SRITMFDSKNQSVLHKLCAEN---NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG-FVDAVQILLEAGANINHTDC 409 (978)
Q Consensus 334 ~~~~~~~~~~~~~l~~a~~~~---~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~ 409 (978)
..++..+..|.||||.|+..+ +.++++.|++ .|++++..+..|.||||+|+..| ..+++++|++.|++++..+.
T Consensus 38 a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~--~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~ 115 (471)
T PHA03095 38 ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLE--AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK 115 (471)
T ss_pred CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC
Confidence 456778889999999999999 9999999999 89999999999999999999999 59999999999999999999
Q ss_pred CCCcHHHHHH--HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC--ceeeeeccchHHHHHHHHcCCCCcccCCC
Q psy9384 410 EGWTPLRSAS--WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADSE 485 (978)
Q Consensus 410 ~~~t~L~~A~--~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~--~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~ 485 (978)
.|.||||+|+ ..++.+++++|+++|++++..+..|.||||+|+..+. .++ +++|+++|++++..+..
T Consensus 116 ~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~i---------v~~Ll~~g~~~~~~d~~ 186 (471)
T PHA03095 116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVEL---------LRLLIDAGADVYAVDDR 186 (471)
T ss_pred CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHH---------HHHHHHcCCCCcccCCC
Confidence 9999999999 5668999999999999999999999999999998774 455 99999999999999999
Q ss_pred CCcHHHHHHHc--CCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q psy9384 486 GRTALIASAYM--GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV 563 (978)
Q Consensus 486 ~~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~ 563 (978)
|.||||.++.. ++.++++.|+++|++++.++..|.||||+|+.. ......+++.|++.|++++..+..|.||||+
T Consensus 187 g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~---~~~~~~~v~~ll~~g~din~~d~~g~TpLh~ 263 (471)
T PHA03095 187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATG---SSCKRSLVLPLLIAGISINARNRYGQTPLHY 263 (471)
T ss_pred CCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc---CCchHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 99999999875 788999999999999999999999999999842 1123467888889999999999899999999
Q ss_pred HHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC
Q psy9384 564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620 (978)
Q Consensus 564 a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 620 (978)
|+..|+.+++++|+++|++++..+..|.|||+.|+..++.++++.|++.+++++...
T Consensus 264 A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~ 320 (471)
T PHA03095 264 AAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVA 320 (471)
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999989999999999999999999999998888776543
No 19
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=343.55 Aligned_cols=287 Identities=30% Similarity=0.403 Sum_probs=185.6
Q ss_pred CHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH-----HHHcCCHHHHHH
Q psy9384 355 NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRS-----ASWGGHSAVVKL 429 (978)
Q Consensus 355 ~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~-----A~~~g~~~iv~~ 429 (978)
...+++++++ .+...+..+..+.||||.|+..|+.++|++|++.|++++..+..+.||||+ |+..|+.+++++
T Consensus 14 ~~~~~~~~~~--~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~ 91 (480)
T PHA03100 14 KVKNIKYIIM--EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKL 91 (480)
T ss_pred HHHHHHHHHh--cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHH
Confidence 3456677776 445555566777788888888888888888888888877777777788888 888888888888
Q ss_pred HHhCCCCCCcCCCCCCcHHHHHH--hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHH
Q psy9384 430 LLQSGADVNCSDMGGRTALRAAA--WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG--HADIVSSI 505 (978)
Q Consensus 430 Ll~~g~~~~~~~~~~~t~l~~A~--~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~--~~~~v~~L 505 (978)
|+++|++++..+..|.||||+|+ ..|+.++ +++|+++|++++..+..|.||||.|+..+ +.+++++|
T Consensus 92 Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~i---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~L 162 (480)
T PHA03100 92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSI---------VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLL 162 (480)
T ss_pred HHHCCCCCCCCCCCCCchhhHHHhcccChHHH---------HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHH
Confidence 88888777777777777777777 7777777 77777777777777777777777777777 66666666
Q ss_pred HHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccC
Q psy9384 506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585 (978)
Q Consensus 506 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~ 585 (978)
+++|++++..+..|.||||+|+ ..++.+++++|++.|++++..+..+.++++.
T Consensus 163 l~~g~din~~d~~g~tpL~~A~-----~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~---------------------- 215 (480)
T PHA03100 163 IDKGVDINAKNRYGYTPLHIAV-----EKGNIDVIKFLLDNGADINAGDIETLLFTIF---------------------- 215 (480)
T ss_pred HHCCCCcccccCCCCCHHHHHH-----HhCCHHHHHHHHHcCCCccCCCCCCCcHHHH----------------------
Confidence 6666666655555555555555 3445555555555555555444444333333
Q ss_pred CCCCCCcHHHHHHHcCC--HHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCc
Q psy9384 586 IDKSGRTPLWAAASMGH--ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDE 663 (978)
Q Consensus 586 ~~~~~~t~L~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~ 663 (978)
.+|||.|+..++ .+++++|++.|++++..+..|.||||+|+..++.+++++|+++| .++
T Consensus 216 -----~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g--------------ad~ 276 (480)
T PHA03100 216 -----ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG--------------ANP 276 (480)
T ss_pred -----HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--------------CCC
Confidence 355555555555 55555555555555555555555555555555555555555555 445
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC
Q psy9384 664 QHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ 698 (978)
Q Consensus 664 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 698 (978)
+.++..|.||+++|+..++.+++++|+++|++++.
T Consensus 277 n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~ 311 (480)
T PHA03100 277 NLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 311 (480)
T ss_pred CccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence 55555555555555555555555555555554443
No 20
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=343.52 Aligned_cols=290 Identities=30% Similarity=0.413 Sum_probs=252.0
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH-----HHhcCCceeeeec
Q psy9384 389 GFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA-----AAWGGHLEVTIVL 463 (978)
Q Consensus 389 g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~-----A~~~~~~~i~~~~ 463 (978)
...++++++++.+...+..+..+.||||+|+..|+.++|++|+++|++++..+..+.+|+|+ |+..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~i---- 88 (480)
T PHA03100 13 IKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEI---- 88 (480)
T ss_pred HHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHH----
Confidence 34567888888776666777888899999999999999999999999999888888999999 999998888
Q ss_pred cchHHHHHHHHcCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC--hHHH
Q psy9384 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASA--YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG--YAKV 539 (978)
Q Consensus 464 ~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~--~~~~ 539 (978)
+++|+++|++++..+..|.|||++|+ ..|+.+++++|+++|++++..+..|.||||+|+ ..+ +.++
T Consensus 89 -----v~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~~i 158 (480)
T PHA03100 89 -----VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL-----ESNKIDLKI 158 (480)
T ss_pred -----HHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHH-----HcCCChHHH
Confidence 99999999999888888999999999 889999999999988888888888888888887 556 7777
Q ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q psy9384 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTI 619 (978)
Q Consensus 540 v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 619 (978)
+++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.++++.
T Consensus 159 v~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~----------------------- 215 (480)
T PHA03100 159 LKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF----------------------- 215 (480)
T ss_pred HHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH-----------------------
Confidence 777777777777777777777777777777777777777777777777767666665
Q ss_pred CCCCCcHHHHHHHcCC--HHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy9384 620 DAEGRTVLSVAAAQGN--IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD 697 (978)
Q Consensus 620 ~~~~~t~L~~A~~~~~--~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 697 (978)
.||||.|+..++ .+++++|+++| .+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 216 ----~t~l~~a~~~~~~~~~iv~~Ll~~g--------------~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n 277 (480)
T PHA03100 216 ----ETPLHIAACYNEITLEVVNYLLSYG--------------VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN 277 (480)
T ss_pred ----HhHHHHHHHhCcCcHHHHHHHHHcC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 789999999999 99999999999 7888899999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCC
Q psy9384 698 QVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734 (978)
Q Consensus 698 ~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~ 734 (978)
..|..|.||+++|+.+++.+++++|+++ |++++..+
T Consensus 278 ~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~ 313 (480)
T PHA03100 278 LVNKYGDTPLHIAILNNNKEIFKLLLNN-GPSIKTII 313 (480)
T ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCHHHHH
Confidence 9999999999999999999999999997 88876543
No 21
>PHA02792 ankyrin-like protein; Provisional
Probab=100.00 E-value=6.7e-36 Score=325.71 Aligned_cols=243 Identities=13% Similarity=0.080 Sum_probs=175.3
Q ss_pred HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHhCC
Q psy9384 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV-AAFEGHRDVCEILLENE 580 (978)
Q Consensus 502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~-a~~~~~~~iv~~Ll~~g 580 (978)
.+.|++.|+++-. ..++.|||+...- +.....-++.++..|..++..+..+.+++++ |..+|+.|++++|+++|
T Consensus 21 ~~~l~~~g~~~~~-~~~~~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~G 95 (631)
T PHA02792 21 AQSLIESGANPLY-EYDGETPLKAYVT----KKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKG 95 (631)
T ss_pred HHHHHHcCCCccc-ccCCCccHHHHHh----hhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcC
Confidence 4667888888766 4566788887652 2233344566777777788888888888875 55678899999999999
Q ss_pred CCccCCCCCCCcHHHHHHH-cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCC
Q psy9384 581 ADQDHIDKSGRTPLWAAAS-MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659 (978)
Q Consensus 581 ~~~~~~~~~~~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~ 659 (978)
+++|.++..+.+|+++|+. .++.|++++|+++|+++...+..|.||++.-+.....--. +.+ ..+...
T Consensus 96 AdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~----~~~------~~~~~~- 164 (631)
T PHA02792 96 LEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNW----DDE------LDDYDY- 164 (631)
T ss_pred CCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccch----hhh------cccccc-
Confidence 9999988888899898855 6999999999999999888888899988765432110000 000 000011
Q ss_pred CCCccccCCCCchHHHHHHHcC-------CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCC--CHHHHHHHHhhcCCCC
Q psy9384 660 SLDEQHRDNCGWTPLHYAAIEG-------HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG--HYHLVEMFLEQYEANV 730 (978)
Q Consensus 660 ~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~--~~~iv~~Ll~~~~~~~ 730 (978)
...+|..+..|.||||+|+.++ +.+++++|+.+|++++..|..|.||||+|+.+. ..|++++|++. +..
T Consensus 165 ~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~--~~~ 242 (631)
T PHA02792 165 DYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS--NYS 242 (631)
T ss_pred ccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc--ccc
Confidence 1345678899999999999999 899999999999999999999999999999999 88999999985 211
Q ss_pred cCCCCCCCcHHHHHHhccc---chhHHHHHHHHHHHHHHhcC
Q psy9384 731 NQKSHDGRTALRVNMKNVT---KLSFWYLLIQPLLNIILSSL 769 (978)
Q Consensus 731 ~~~~~~g~t~L~~a~~~~~---~~~~~~~~~~~Ll~~~~~~~ 769 (978)
. .+....|.--+.... +..-+..++..|+ +.+
T Consensus 243 ~---~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll----~~~ 277 (631)
T PHA02792 243 G---NELMNILSNYLRKQYRNKNHKIDNYIVDKLL----SGH 277 (631)
T ss_pred c---cchHhHHHHHHHHHhccCccCccHHHHHHHH----hCC
Confidence 1 111223333332111 1124456888888 666
No 22
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=5.6e-35 Score=331.31 Aligned_cols=304 Identities=24% Similarity=0.265 Sum_probs=228.3
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~ 456 (978)
.+.||||+||..|+.++|++|+++|++++..|..|.||||+||..|+.++++.|++.+.+... ..+.++++.|+..++
T Consensus 36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~ 113 (477)
T PHA02878 36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRN 113 (477)
T ss_pred cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCC
Confidence 456677777777777777777777777766666677777777777777777666665543322 234455555555555
Q ss_pred ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCCh
Q psy9384 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY 536 (978)
Q Consensus 457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~ 536 (978)
.++ +++|+..+.+.. ... .+.............
T Consensus 114 ~ei---------~~~Ll~~~~~~~---------------------------------~~~-----~~~~~~~~~~~~~~~ 146 (477)
T PHA02878 114 VEI---------FKIILTNRYKNI---------------------------------QTI-----DLVYIDKKSKDDIIE 146 (477)
T ss_pred HHH---------HHHHHhCcccCc---------------------------------ccC-----cHHHHhhccchhhHH
Confidence 555 555554432211 000 000000000001234
Q ss_pred HHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy9384 537 AKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615 (978)
Q Consensus 537 ~~~v~~Ll~~g~~~~~~~~~-~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 615 (978)
.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++.|++
T Consensus 147 ~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~ 226 (477)
T PHA02878 147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS 226 (477)
T ss_pred HHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence 56999999999999999888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCccccccCCCCCCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhCC
Q psy9384 616 VDTIDAEGRTVLSVAAAQ-GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN-CGWTPLHYAAIEGHEEVCRALLEAG 693 (978)
Q Consensus 616 ~~~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g 693 (978)
++..+..|.||||+|+.. ++.+++++|+++| .+++.++. .|.||||+| .++.+++++|+++|
T Consensus 227 in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g--------------advn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g 290 (477)
T PHA02878 227 TDARDKCGNTPLHISVGYCKDYDILKLLLEHG--------------VDVNAKSYILGLTALHSS--IKSERKLKLLLEYG 290 (477)
T ss_pred CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC--------------CCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCC
Confidence 999999999999999975 6899999999999 67777765 799999999 57889999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHCC-CHHHHHHHHhh----cCCCCcCCCCCCCcHHHHHH
Q psy9384 694 AKVDQVDNDGRAPLILAAQDG-HYHLVEMFLEQ----YEANVNQKSHDGRTALRVNM 745 (978)
Q Consensus 694 ~~~~~~d~~g~t~L~~A~~~~-~~~iv~~Ll~~----~~~~~~~~~~~g~t~L~~a~ 745 (978)
+++|..|..|.||||+|+..+ ..++++.|+.+ ...+++.++..|..+-..++
T Consensus 291 adin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i 347 (477)
T PHA02878 291 ADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCI 347 (477)
T ss_pred CCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHH
Confidence 999999999999999999754 56677777654 24566667777766655555
No 23
>PHA02792 ankyrin-like protein; Provisional
Probab=100.00 E-value=9.2e-35 Score=316.83 Aligned_cols=385 Identities=13% Similarity=0.075 Sum_probs=228.3
Q ss_pred HHHHcCCCCcccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCC
Q psy9384 471 LLLAAGAHVNAADSEGRTALIA-SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549 (978)
Q Consensus 471 ~Ll~~g~~~~~~~~~~~t~L~~-A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~ 549 (978)
.++.-|..++..+.++..++++ |..+|+.|+|++|+++|++++.++..+.+++++|+. ..++.+++++|++.|++
T Consensus 56 ~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~----~~~~~eivk~Ll~~Gad 131 (631)
T PHA02792 56 VVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATT----SNPNVDVFKLLLDKGIP 131 (631)
T ss_pred HHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeec----CCCChHHHHHHHHCCCC
Confidence 3333444444444444444443 233445555555555555555555545555555431 24555555555555555
Q ss_pred CCCCCCCCCCHHHHHHHcCC-HHHHHHHH--hCCCCccCCCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCCccc
Q psy9384 550 VDHEDREGMTPLLVAAFEGH-RDVCEILL--ENEADQDHIDKSGRTPLWAAASMG-------HASCVALLLFWGAYVDTI 619 (978)
Q Consensus 550 ~~~~~~~~~t~L~~a~~~~~-~~iv~~Ll--~~g~~~~~~~~~~~t~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~ 619 (978)
++..+..|.||++.-+.... .+.-+.+- +.+..++..+..|.||||+|+.++ +.++++.|+++|++++..
T Consensus 132 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~ 211 (631)
T PHA02792 132 TCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY 211 (631)
T ss_pred cccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc
Confidence 54444555555543332111 00101111 112334455566666666666666 566666666666666666
Q ss_pred CCCCCcHHHHHHHcC--CHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHH--c------CCHHHHHHH
Q psy9384 620 DAEGRTVLSVAAAQG--NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI--E------GHEEVCRAL 689 (978)
Q Consensus 620 ~~~~~t~L~~A~~~~--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~------~~~~~v~~L 689 (978)
+..|.||||+|+.+. ..+++++|++.. ... ...+..|+.-.+ . =+..+|..|
T Consensus 212 d~~g~t~l~~~~~~~~i~~ei~~~L~~~~--------------~~~----~~~~~~l~~y~~~~~~~~~~~id~~iv~~l 273 (631)
T PHA02792 212 TYREHTTLYYYVDKCDIKREIFDALFDSN--------------YSG----NELMNILSNYLRKQYRNKNHKIDNYIVDKL 273 (631)
T ss_pred CCCCChHHHHHHHcccchHHHHHHHHhcc--------------ccc----cchHhHHHHHHHHHhccCccCccHHHHHHH
Confidence 666666666666666 566666666532 000 011222221111 1 124478888
Q ss_pred HhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384 690 LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL 769 (978)
Q Consensus 690 l~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~ 769 (978)
++.+-.-+. +.......+.+++..++.++. ++ -+..||.-.++ ...+.+++++|+ ++|
T Consensus 274 l~~~~~~~i--------~~~~~~~~~~~~~~~~~~~~~-~~------~q~~l~~Yl~~---~~v~ieiIK~LI----d~G 331 (631)
T PHA02792 274 LSGHDTFYI--------LELCNSLRNNIIISSILKRYT-DS------IQDLLSEYVSY---HTVYINVIKCMI----DEG 331 (631)
T ss_pred HhCCCccch--------hhhhhhhhhhhHHHHHHHHHh-HH------HHHHHHHHHhc---CCccHHHHHHHH----HCC
Confidence 776532111 111111112233333333311 10 11244444422 345778888888 777
Q ss_pred CCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccc
Q psy9384 770 FPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLS 849 (978)
Q Consensus 770 ~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~ 849 (978)
++... ......++ .|+..|+.+ ++++|+++ |++++.+|..
T Consensus 332 -----a~~~r-----------------------------~~~~n~~~--~Aa~~gn~e---IVelLIs~-GADIN~kD~~ 371 (631)
T PHA02792 332 -----ATLYR-----------------------------FKHINKYF--QKFDNRDPK---VVEYILKN-GNVVVEDDDN 371 (631)
T ss_pred -----Ccccc-----------------------------CCcchHHH--HHHHcCCHH---HHHHHHHc-CCchhhhcCC
Confidence 44321 01223455 778889999 99999999 9999998877
Q ss_pred c--ccccccccc--------hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccH
Q psy9384 850 Q--RRQTSSSSA--------VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNA 919 (978)
Q Consensus 850 ~--~tpl~~a~~--------~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~ 919 (978)
| .||||.|.. ++++|+++|++++.++ ..| .||||+|+..++.+++++|+++|+++|.+|..|.||
T Consensus 372 g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD-~~G----~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~Tp 446 (631)
T PHA02792 372 IINIMPLFPTLSIHESDVLSILKLCKPYIDDINKID-KHG----RSILYYCIESHSVSLVEWLIDNGADINITTKYGSTC 446 (631)
T ss_pred CCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccc-ccC----cchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 5 588887555 5788899999999999 999 999999999999999999999999999999999999
Q ss_pred HHHHHH----------cChHHHHHHHHHcCCCCcc
Q psy9384 920 FRVAAK----------SGHETVLRLLKQYADDSEY 944 (978)
Q Consensus 920 l~~A~~----------~~~~~~v~~L~~~g~~~~~ 944 (978)
|++|+. ....+++++|+++|.++..
T Consensus 447 L~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~~ 481 (631)
T PHA02792 447 IGICVILAHACIPEIAELYIKILEIILSKLPTIEC 481 (631)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChhH
Confidence 999986 2336789999999988764
No 24
>KOG0508|consensus
Probab=100.00 E-value=9.8e-35 Score=290.17 Aligned_cols=216 Identities=42% Similarity=0.597 Sum_probs=189.6
Q ss_pred HHHHHcCCHHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCC--------CCCCCCCCcHH
Q psy9384 348 HKLCAENNINLLKTFLKSCEALD---LELVDKHGQTALNVAAHQGFVDAVQILLEA-GANI--------NHTDCEGWTPL 415 (978)
Q Consensus 348 ~~a~~~~~~~~v~~ll~~~~~~~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~--------~~~~~~~~t~L 415 (978)
..|+..|.+..+..|+...+..+ .--...+|.|||-.||++|+.++|++|+++ ++++ +-..-.|.+||
T Consensus 9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL 88 (615)
T KOG0508|consen 9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL 88 (615)
T ss_pred HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence 36778888888777775211111 112356788999999999999999999994 4543 33345688999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q psy9384 416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY 495 (978)
Q Consensus 416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~ 495 (978)
..|+..||+++|+.|+++|+++|.......|||..||.-|++++ +++|+++|+|++..|..|.|.|++||+
T Consensus 89 WaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~lei---------vKyLvE~gad~~IanrhGhTcLmIa~y 159 (615)
T KOG0508|consen 89 WAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEI---------VKYLVEHGADPEIANRHGHTCLMIACY 159 (615)
T ss_pred hHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHH---------HHHHHHcCCCCcccccCCCeeEEeeec
Confidence 99999999999999999999999888888899999999999999 999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy9384 496 MGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575 (978)
Q Consensus 496 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~ 575 (978)
.|+.+++++|++.|+++|.++..|+|+||.++ +.|+.+++++|+++|+.++. +..|.|||..|...|+.++|++
T Consensus 160 kGh~~I~qyLle~gADvn~ks~kGNTALH~ca-----EsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~ 233 (615)
T KOG0508|consen 160 KGHVDIAQYLLEQGADVNAKSYKGNTALHDCA-----ESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVER 233 (615)
T ss_pred cCchHHHHHHHHhCCCcchhcccCchHHHhhh-----hcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHH
Confidence 99999999999999999999999999999999 99999999999999998764 4569999999999999999999
Q ss_pred HHh
Q psy9384 576 LLE 578 (978)
Q Consensus 576 Ll~ 578 (978)
|++
T Consensus 234 L~~ 236 (615)
T KOG0508|consen 234 LLQ 236 (615)
T ss_pred Hhc
Confidence 997
No 25
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=325.98 Aligned_cols=286 Identities=22% Similarity=0.270 Sum_probs=201.4
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy9384 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSAS 419 (978)
Q Consensus 340 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~ 419 (978)
...+.+|||.|+..|+.++|++|++ .|++++..|..|.||||+||..|+.+++++|++.+.+.+. ..+.+|++.|+
T Consensus 34 ~~~~~tPLh~A~~~g~~e~vk~Ll~--~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~ 109 (477)
T PHA02878 34 SLIPFIPLHQAVEARNLDVVKSLLT--RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAF 109 (477)
T ss_pred cccCcchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHH
Confidence 4567899999999999999999999 8999999999999999999999999999999998765544 46789999999
Q ss_pred HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCC-CCcHHHHHHHcCC
Q psy9384 420 WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGH 498 (978)
Q Consensus 420 ~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~-~~t~L~~A~~~~~ 498 (978)
..++.+++++|+..+.+..... ....+......+..+ .+++++|+++|++++..+.. |.||||+|+..|+
T Consensus 110 ~~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~ 180 (477)
T PHA02878 110 NNRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDIIE-------AEITKLLLSYGADINMKDRHKGNTALHYATENKD 180 (477)
T ss_pred HcCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhHH-------HHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCC
Confidence 9999999999998865432111 001111111111111 11377777777777777776 7777777777777
Q ss_pred HHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHH
Q psy9384 499 ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE-GHRDVCEILL 577 (978)
Q Consensus 499 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~-~~~~iv~~Ll 577 (978)
.+++++|+++|++++..+..|.||||.|+ ..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+
T Consensus 181 ~~iv~~Ll~~gad~n~~d~~g~tpLh~A~-----~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll 255 (477)
T PHA02878 181 QRLTELLLSYGANVNIPDKTNNSPLHHAV-----KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLL 255 (477)
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHH-----HhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Confidence 77777777777777777777777777666 45666666766666666666666666666666654 4666666666
Q ss_pred hCCCCccCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHC
Q psy9384 578 ENEADQDHIDK-SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG-NIDVVNQLLDR 645 (978)
Q Consensus 578 ~~g~~~~~~~~-~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~-~~~iv~~Ll~~ 645 (978)
++|++++..+. .|.||||.| .++.+++++|++.|++++..+..|.|||+.|+..+ ..++++.|+.+
T Consensus 256 ~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~ 323 (477)
T PHA02878 256 EHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN 323 (477)
T ss_pred HcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence 66666665554 466666666 34556666666666666666666666666666532 34455555543
No 26
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=8.5e-34 Score=322.36 Aligned_cols=288 Identities=22% Similarity=0.277 Sum_probs=178.7
Q ss_pred hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccc
Q psy9384 388 QGFVDAVQILLEAGANINHTDCEGWTPLRSASWG--GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465 (978)
Q Consensus 388 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~--g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~ 465 (978)
....++|++|+++|+++|.. ..|.||||.++.. ++.++|++|+++|++++.++ .+.|||+.|+.++.... ...
T Consensus 13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~---~~~ 87 (494)
T PHA02989 13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITS---NKI 87 (494)
T ss_pred cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcch---hhH
Confidence 46788888888888888887 5678888765544 36788888888888888765 46788888876654210 011
Q ss_pred hHHHHHHHHcCCCCcccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-ccCCCCCCChhhhhhhccCCCCChHHHHH
Q psy9384 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYM---GHADIVSSILEYDADI-NQQDNDGRTALSVSALCVPSSDGYAKVVS 541 (978)
Q Consensus 466 ~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~-~~~~~~~~t~l~~a~~~~~~~~~~~~~v~ 541 (978)
.+++++|+++|+++|.++..|.|||+.|+.. ++.+++++|+++|+++ +..+..|.||||+|+.. ..++.++++
T Consensus 88 ~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~---~~~~~~iv~ 164 (494)
T PHA02989 88 KKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES---FSVKKDVIK 164 (494)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh---ccCCHHHHH
Confidence 2237788888888877777777887776654 5677777777777777 66677777777766521 234567777
Q ss_pred HHHhCCCCCCC-CCCCCCCHHHHHHHcC----CHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9384 542 ILLEKGAKVDH-EDREGMTPLLVAAFEG----HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616 (978)
Q Consensus 542 ~Ll~~g~~~~~-~~~~~~t~L~~a~~~~----~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 616 (978)
+|++.|++++. .+..|.|||+.|+..+ +.+++++|+++|++++..+..+.++++.++..+.
T Consensus 165 ~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~-------------- 230 (494)
T PHA02989 165 ILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK-------------- 230 (494)
T ss_pred HHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch--------------
Confidence 77777777666 4556677777665543 6667777777777666666666666665543221
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q psy9384 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696 (978)
Q Consensus 617 ~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 696 (978)
+...+..+++++|+. + +++|.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 231 -------------~~~~~~~~il~~l~~-~--------------advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi 282 (494)
T PHA02989 231 -------------ILSKKEFKVLNFILK-Y--------------IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI 282 (494)
T ss_pred -------------hhcccchHHHHHHHh-C--------------CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc
Confidence 001122344443332 2 344444555555555555555555555555555555
Q ss_pred CCCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q psy9384 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725 (978)
Q Consensus 697 ~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ 725 (978)
+..|..|.||||+|+..|+.++++.|++.
T Consensus 283 n~~d~~G~TpL~~A~~~~~~~iv~~LL~~ 311 (494)
T PHA02989 283 YNVSKDGDTVLTYAIKHGNIDMLNRILQL 311 (494)
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 55555555555555555555555555543
No 27
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=321.10 Aligned_cols=279 Identities=22% Similarity=0.303 Sum_probs=193.1
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC--CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG--HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~--~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~ 499 (978)
.+.++|++|+++|+++|.. ..|.||++.++..+ +.++ +++|+++|+++|..+ .+.|||+.|+.++..
T Consensus 14 ~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~i---------v~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~ 82 (494)
T PHA02989 14 VDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKI---------VKLLIDNGADVNYKG-YIETPLCAVLRNREI 82 (494)
T ss_pred CcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHH---------HHHHHHcCCCccCCC-CCCCcHHHHHhccCc
Confidence 4455566666556555554 34555554333222 3444 555555555555443 335555554433210
Q ss_pred HHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHH
Q psy9384 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE---GHRDVCEIL 576 (978)
Q Consensus 500 ~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~---~~~~iv~~L 576 (978)
...+..+++++|+++|++++.++..|.|||+.|+.. ++.+++++|
T Consensus 83 --------------------------------~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~L 130 (494)
T PHA02989 83 --------------------------------TSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFL 130 (494)
T ss_pred --------------------------------chhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHH
Confidence 123455666666677776666666667777666543 456777777
Q ss_pred HhCCCCc-cCCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHHcC----CHHHHHHHHHCCCc
Q psy9384 577 LENEADQ-DHIDKSGRTPLWAAASM--GHASCVALLLFWGAYVDT-IDAEGRTVLSVAAAQG----NIDVVNQLLDRGMI 648 (978)
Q Consensus 577 l~~g~~~-~~~~~~~~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~~----~~~iv~~Ll~~~~~ 648 (978)
+++|+++ +..+..|.||||+|+.. ++.+++++|+++|++++. .+..|.||||.|+..+ +.+++++|+++|
T Consensus 131 l~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G-- 208 (494)
T PHA02989 131 LSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG-- 208 (494)
T ss_pred HHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC--
Confidence 7777777 56666777777776543 466777777777777766 4566777777766543 777777777777
Q ss_pred cccccCCCCCCCCCccccCCCCchHHHHHHHc------CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q psy9384 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE------GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722 (978)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~------~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~L 722 (978)
.+++.++..+.++||.++.. +..+++++|+. |+++|.+|..|.||||+|+..|+.+++++|
T Consensus 209 ------------a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~L 275 (494)
T PHA02989 209 ------------VNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYL 275 (494)
T ss_pred ------------CCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHH
Confidence 56666666777777765543 45678887665 799999999999999999999999999999
Q ss_pred HhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHH
Q psy9384 723 LEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNI 764 (978)
Q Consensus 723 l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~ 764 (978)
++. |++++.+|..|.||||+|+ ..++.++++.|++.
T Consensus 276 L~~-Gadin~~d~~G~TpL~~A~-----~~~~~~iv~~LL~~ 311 (494)
T PHA02989 276 LKL-GDDIYNVSKDGDTVLTYAI-----KHGNIDMLNRILQL 311 (494)
T ss_pred HHc-CCCccccCCCCCCHHHHHH-----HcCCHHHHHHHHhc
Confidence 997 9999999999999999999 88999999998864
No 28
>KOG0508|consensus
Probab=100.00 E-value=4.2e-33 Score=278.54 Aligned_cols=213 Identities=37% Similarity=0.481 Sum_probs=186.1
Q ss_pred HHHHhCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCC--------cCCCCCCcHHH
Q psy9384 384 VAAHQGFVDAVQILLEAGAN-----INHTDCEGWTPLRSASWGGHSAVVKLLLQS-GADVN--------CSDMGGRTALR 449 (978)
Q Consensus 384 ~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~-g~~~~--------~~~~~~~t~l~ 449 (978)
-|++.|....+..|+....+ .-....+|.|||-.||++||.++|++|+++ ++++. .....|.+||.
T Consensus 10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW 89 (615)
T KOG0508|consen 10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW 89 (615)
T ss_pred HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence 67788888877777654332 112345788999999999999999999994 44433 33446789999
Q ss_pred HHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhc
Q psy9384 450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529 (978)
Q Consensus 450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~ 529 (978)
.|+..||.++ |+.|+++|+++|.......|||-.||.-|+.++|+||+++|+|++..+..|.|.|+.|+
T Consensus 90 aAsaAGHl~v---------Vk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~-- 158 (615)
T KOG0508|consen 90 AASAAGHLEV---------VKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC-- 158 (615)
T ss_pred HHhccCcHHH---------HHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee--
Confidence 9999999999 99999999999988888889999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609 (978)
Q Consensus 530 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~L 609 (978)
.+|+.+|+++|++.|+|+|.++..|.|+||.|++.|+.+++++|+++|+.+. ++..|.|||..|+..|+.++++.|
T Consensus 159 ---ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L 234 (615)
T KOG0508|consen 159 ---YKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERL 234 (615)
T ss_pred ---ccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHH
Confidence 7899999999999999999999999999999999999999999999999877 566799999999999999999999
Q ss_pred HH
Q psy9384 610 LF 611 (978)
Q Consensus 610 l~ 611 (978)
++
T Consensus 235 ~~ 236 (615)
T KOG0508|consen 235 LQ 236 (615)
T ss_pred hc
Confidence 86
No 29
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=5.5e-33 Score=283.48 Aligned_cols=235 Identities=21% Similarity=0.200 Sum_probs=167.9
Q ss_pred cCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9384 353 ENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432 (978)
Q Consensus 353 ~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~ 432 (978)
.++.+++++|++ .++ +..|..|.||||+|+..|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|++
T Consensus 9 ~~~~~~~~~Lis--~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~ 82 (284)
T PHA02791 9 WKSKQLKSFLSS--KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF 82 (284)
T ss_pred cCHHHHHHHHHh--CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHH
Confidence 367778888887 444 4568888888888888888888888888888877664 5788888888888888888888
Q ss_pred CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384 433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG-RTALIASAYMGHADIVSSILEYDAD 511 (978)
Q Consensus 433 ~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~g~~ 511 (978)
+|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..| .||||+|+..|+.+++++|++++++
T Consensus 83 ~Gadvn~~d~~G~TpLh~Aa~~g~~ei---------vk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~ 153 (284)
T PHA02791 83 SGMDDSQFDDKGNTALYYAVDSGNMQT---------VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 153 (284)
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence 888888888888888888888888888 888888888888777776 4788888888888888888887643
Q ss_pred CccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCccCCCCCC
Q psy9384 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTP-LLVAAFEGHRDVCEILLENEADQDHIDKSG 590 (978)
Q Consensus 512 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~ 590 (978)
.... ..|.||||+|+ ..|+.+++++|+++|++++.++..|.+| ||+|+..|+.+++++|+++|++++.++..+
T Consensus 154 ~~d~-~~g~TpLh~Aa-----~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~ 227 (284)
T PHA02791 154 TFDL-AILLSCIHITI-----KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN 227 (284)
T ss_pred cccc-ccCccHHHHHH-----HcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence 2110 13456666665 4555666666666666655555555544 566666666666666666666555555432
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC
Q psy9384 591 RTPLWAAASMGHASCVALLLFWGAY 615 (978)
Q Consensus 591 ~t~L~~A~~~~~~~~v~~Ll~~g~~ 615 (978)
++| ++.|++++|+++.++
T Consensus 228 -~~l------~~~e~~~~ll~~~~~ 245 (284)
T PHA02791 228 -VLL------DDAEIAKMIIEKHVE 245 (284)
T ss_pred -ccC------CCHHHHHHHHHhhhh
Confidence 332 555555555555443
No 30
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=280.32 Aligned_cols=233 Identities=18% Similarity=0.186 Sum_probs=213.1
Q ss_pred hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchH
Q psy9384 388 QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLC 467 (978)
Q Consensus 388 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~ 467 (978)
.++.+++++|+++|++ ..|..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.++
T Consensus 9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~ei-------- 76 (284)
T PHA02791 9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKI-------- 76 (284)
T ss_pred cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHH--------
Confidence 5788999999999874 578899999999999999999999999999988764 6899999999999999
Q ss_pred HHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCC-ChhhhhhhccCCCCChHHHHHHHHhC
Q psy9384 468 VVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR-TALSVSALCVPSSDGYAKVVSILLEK 546 (978)
Q Consensus 468 vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-t~l~~a~~~~~~~~~~~~~v~~Ll~~ 546 (978)
+++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|. |||++|+ ..++.+++++|++.
T Consensus 77 -V~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa-----~~g~~eivk~LL~~ 150 (284)
T PHA02791 77 -VKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-----MLNDVSIVSYFLSE 150 (284)
T ss_pred -HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHH-----HcCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999888874 8999999 68999999999998
Q ss_pred CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCCcccCCCCC
Q psy9384 547 GAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP-LWAAASMGHASCVALLLFWGAYVDTIDAEGR 624 (978)
Q Consensus 547 g~~~~~~~-~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 624 (978)
+.+. .+ ..|.||||+|+..|+.+++++|+++|++++..+..|.+| ||+|+..|+.+++++|+++|++++.++..+
T Consensus 151 ~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~- 227 (284)
T PHA02791 151 IPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN- 227 (284)
T ss_pred CCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-
Confidence 7543 22 247899999999999999999999999999999989877 999999999999999999999999998854
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCC
Q psy9384 625 TVLSVAAAQGNIDVVNQLLDRGM 647 (978)
Q Consensus 625 t~L~~A~~~~~~~iv~~Ll~~~~ 647 (978)
++| ++.|++++|+++..
T Consensus 228 ~~l------~~~e~~~~ll~~~~ 244 (284)
T PHA02791 228 VLL------DDAEIAKMIIEKHV 244 (284)
T ss_pred ccC------CCHHHHHHHHHhhh
Confidence 444 89999999999874
No 31
>KOG4412|consensus
Probab=100.00 E-value=4.2e-33 Score=242.53 Aligned_cols=206 Identities=35% Similarity=0.527 Sum_probs=179.4
Q ss_pred chHHHHHHHcCCHHHHHHHHHhccCCCccccCC-CCCcHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILL-EAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
.++.+.+|......-++.++++. ...++.++. +|+||||+||.+|+.++|++|+ +.++.+|.+|..||||||.||..
T Consensus 4 ~~~~~~~~~~~~~~kveel~~s~-~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~ 82 (226)
T KOG4412|consen 4 ASLGKAICENCEEFKVEELIQSD-PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN 82 (226)
T ss_pred cchHHHHHhhchHHHHHHHHhcC-hhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence 35567777777777888888742 234555544 8999999999999999999999 56788999999999999999999
Q ss_pred CCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384 422 GHSAVVKLLLQS-GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500 (978)
Q Consensus 422 g~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~ 500 (978)
|+.++|+-|+.+ |+|+|..++.|.|+||||+..|+.+| +++|+++|+.++.+|..|.||||.|+.-|.++
T Consensus 83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eI---------aqlLle~ga~i~~kD~~~qtplHRAAavGklk 153 (226)
T KOG4412|consen 83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEI---------AQLLLEKGALIRIKDKQGQTPLHRAAAVGKLK 153 (226)
T ss_pred CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhH---------HHHHHhcCCCCcccccccCchhHHHHhccchh
Confidence 999999999998 89999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy9384 501 IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAA 565 (978)
Q Consensus 501 ~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~ 565 (978)
++++|+..|+.+|..|..|+||||.|. -.++.+...+|+++|++++..|..| |++..++
T Consensus 154 vie~Li~~~a~~n~qDk~G~TpL~~al-----~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~ 212 (226)
T KOG4412|consen 154 VIEYLISQGAPLNTQDKYGFTPLHHAL-----AEGHPDVAVLLVRAGADTDREDKEG-TALRIAC 212 (226)
T ss_pred hHHHHHhcCCCCCcccccCccHHHHHH-----hccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence 999999999999999999999999885 4668888888888888888888877 7776554
No 32
>PHA02798 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=304.71 Aligned_cols=282 Identities=21% Similarity=0.305 Sum_probs=169.7
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc-----CCceeeee
Q psy9384 390 FVDAVQILLEAGANINHTDCEGWTPLRSASW--GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG-----GHLEVTIV 462 (978)
Q Consensus 390 ~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~--~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~-----~~~~i~~~ 462 (978)
..+.|+.|++.+ +++.. ..+.|+++.+.. .++.++|++|+++|++++..+..|.||||.|+.+ ++.++
T Consensus 17 ~~~~v~~ll~~~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~i--- 91 (489)
T PHA02798 17 KLSTVKLLIKSC-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDI--- 91 (489)
T ss_pred cHHHHHHHHhcC-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHH---
Confidence 355666666543 22222 234455443222 2356666666666666666666666666665543 22333
Q ss_pred ccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHH
Q psy9384 463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI 542 (978)
Q Consensus 463 ~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~ 542 (978)
+++|+++|+++|..+..|.||||+|+..+. .++.+++++
T Consensus 92 ------v~~Ll~~GadiN~~d~~G~TpLh~a~~~~~-----------------------------------~~~~~iv~~ 130 (489)
T PHA02798 92 ------VKILIENGADINKKNSDGETPLYCLLSNGY-----------------------------------INNLEILLF 130 (489)
T ss_pred ------HHHHHHCCCCCCCCCCCcCcHHHHHHHcCC-----------------------------------cChHHHHHH
Confidence 555555555555555555555555555431 123445555
Q ss_pred HHhCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHhCCCCccCCC-CCCCcHHHHHHHc----CCHHHHHHHHHCCC
Q psy9384 543 LLEKGAKVDHEDREGMTPLLVAAFEGH---RDVCEILLENEADQDHID-KSGRTPLWAAASM----GHASCVALLLFWGA 614 (978)
Q Consensus 543 Ll~~g~~~~~~~~~~~t~L~~a~~~~~---~~iv~~Ll~~g~~~~~~~-~~~~t~L~~A~~~----~~~~~v~~Ll~~g~ 614 (978)
|+++|++++..+..|.||||+|+..++ .+++++|+++|++++..+ ..+.||||.++.. ++.+++++|+++|+
T Consensus 131 Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga 210 (489)
T PHA02798 131 MIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF 210 (489)
T ss_pred HHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence 555555555555555555555555544 555555555555555442 2345555554432 24555555555555
Q ss_pred CCcccCCCCCcHHH-------HHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHH
Q psy9384 615 YVDTIDAEGRTVLS-------VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCR 687 (978)
Q Consensus 615 ~~~~~~~~~~t~L~-------~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 687 (978)
+++..+..+.++++ .+...++.+++++|+. + .++|.+|..|+||||+|+..|+.++++
T Consensus 211 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~--------------~dvN~~d~~G~TPL~~A~~~~~~~~v~ 275 (489)
T PHA02798 211 IINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-Y--------------IDINQVDELGFNPLYYSVSHNNRKIFE 275 (489)
T ss_pred CcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-c--------------CCCCCcCcCCccHHHHHHHcCcHHHHH
Confidence 55555555555543 2334456777777665 4 677888888888888888888888888
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCC
Q psy9384 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733 (978)
Q Consensus 688 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~ 733 (978)
+|+++|++++..|..|.|||++|+.+++.++++.|++. +++++..
T Consensus 276 ~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~i 320 (489)
T PHA02798 276 YLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNK-KPNKNTI 320 (489)
T ss_pred HHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHHH
Confidence 88888888888888888888888888888888888886 7776644
No 33
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=298.00 Aligned_cols=251 Identities=26% Similarity=0.343 Sum_probs=158.0
Q ss_pred CcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCce
Q psy9384 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458 (978)
Q Consensus 379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 458 (978)
+++||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.+|||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 45566666666666666666666666666556666666666666666666666666665555555566666666666666
Q ss_pred eeeeccchHHHHHHHHcCCCCc-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChH
Q psy9384 459 VTIVLGPLCVVKLLLAAGAHVN-AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537 (978)
Q Consensus 459 i~~~~~~~~vv~~Ll~~g~~~~-~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 537 (978)
+ +++|++.|+..+ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ ..++.
T Consensus 83 ~---------v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~-----~~~~~ 148 (413)
T PHA02875 83 A---------VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV-----MMGDI 148 (413)
T ss_pred H---------HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH-----HcCCH
Confidence 5 666666655443 23345566666666666666666666666666666666666666666 45566
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCC-CcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9384 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSG-RTPLWAAASMGHASCVALLLFWGAYV 616 (978)
Q Consensus 538 ~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~g~~~ 616 (978)
+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..| .+|+++|+..++.+++++|+++|+++
T Consensus 149 ~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228 (413)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence 66666666666666666667777777777777777777777777776666655 35666677777777777777777776
Q ss_pred ccc---CCCCCcHHHHHHHc---CCHHHHHHHH
Q psy9384 617 DTI---DAEGRTVLSVAAAQ---GNIDVVNQLL 643 (978)
Q Consensus 617 ~~~---~~~~~t~L~~A~~~---~~~~iv~~Ll 643 (978)
+.. +.++.|+++.++.. ...+.++.++
T Consensus 229 n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li 261 (413)
T PHA02875 229 NIMFMIEGEECTILDMICNMCTNLESEAIDALI 261 (413)
T ss_pred chHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence 643 45566777765532 2344555454
No 34
>PHA02798 ankyrin-like protein; Provisional
Probab=100.00 E-value=8.3e-32 Score=305.66 Aligned_cols=289 Identities=20% Similarity=0.249 Sum_probs=205.6
Q ss_pred CCHHHHHHHHHhccCCCccccCCCCCcHHHHHHH--hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-----CCHHH
Q psy9384 354 NNINLLKTFLKSCEALDLELVDKHGQTALNVAAH--QGFVDAVQILLEAGANINHTDCEGWTPLRSASWG-----GHSAV 426 (978)
Q Consensus 354 ~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-----g~~~i 426 (978)
-..+.|+.|++ .+...+. ..+.|+++.+.. .++.++|++|+++|++++..+..|.||||.|+.+ ++.++
T Consensus 16 ~~~~~v~~ll~--~~~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~i 91 (489)
T PHA02798 16 VKLSTVKLLIK--SCNPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDI 91 (489)
T ss_pred ccHHHHHHHHh--cCChhhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHH
Confidence 35779999997 3332222 346777764444 4589999999999999999999999999999864 67899
Q ss_pred HHHHHhCCCCCCcCCCCCCcHHHHHHhcC---CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC---HH
Q psy9384 427 VKLLLQSGADVNCSDMGGRTALRAAAWGG---HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH---AD 500 (978)
Q Consensus 427 v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~---~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~---~~ 500 (978)
+++|+++|++++..+..|.||||+|+.++ +.++ +++|+++|++++..+..|.||||+|+..++ .+
T Consensus 92 v~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i---------v~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~ 162 (489)
T PHA02798 92 VKILIENGADINKKNSDGETPLYCLLSNGYINNLEI---------LLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIE 162 (489)
T ss_pred HHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH---------HHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHH
Confidence 99999999999999999999999999987 4456 999999999999999999999999999988 99
Q ss_pred HHHHHHHcCCCCccCC-CCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy9384 501 IVSSILEYDADINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579 (978)
Q Consensus 501 ~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~ 579 (978)
++++|+++|++++..+ ..+.||+|.++.. ....++.+++++|+++|++++..+..+.++++....
T Consensus 163 vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~-~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~------------- 228 (489)
T PHA02798 163 IIKLLLEKGVDINTHNNKEKYDTLHCYFKY-NIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN------------- 228 (489)
T ss_pred HHHHHHHhCCCcccccCcCCCcHHHHHHHh-ccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH-------------
Confidence 9999999999998775 4677888876632 123446777777777777777766666665541100
Q ss_pred CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCC
Q psy9384 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659 (978)
Q Consensus 580 g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~ 659 (978)
.+..+...++.+++.+|+. +++++.++..|.||||+|+..++.+++++|+++|
T Consensus 229 -------------~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G------------- 281 (489)
T PHA02798 229 -------------SLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLG------------- 281 (489)
T ss_pred -------------HHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC-------------
Confidence 0011222233444444433 3555555555555555555555555555555555
Q ss_pred CCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy9384 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD 697 (978)
Q Consensus 660 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 697 (978)
++++.++..|.|||+.|+..++.++++.|++++++++
T Consensus 282 -Adin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 282 -GDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred -CcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence 4555555555555555555555555555555555554
No 35
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=5.1e-31 Score=294.62 Aligned_cols=252 Identities=20% Similarity=0.265 Sum_probs=229.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG 422 (978)
Q Consensus 343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g 422 (978)
.+++|+.|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~--~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLD--IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHH--CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3578999999999999999999 89999999999999999999999999999999999999988889999999999999
Q ss_pred CHHHHHHHHhCCCCCC-cCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384 423 HSAVVKLLLQSGADVN-CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501 (978)
Q Consensus 423 ~~~iv~~Ll~~g~~~~-~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~ 501 (978)
+.+++++|++.|++.+ ..+..|.||||+|+..|+.++ +++|+++|++++..+..|.||||+|+..|+.++
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~i---------v~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDI---------MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHH---------HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 9999999999997654 445679999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHhCC
Q psy9384 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG-MTPLLVAAFEGHRDVCEILLENE 580 (978)
Q Consensus 502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~a~~~~~~~iv~~Ll~~g 580 (978)
+++|+++|++++.++..|.||||+|+ ..++.+++++|++.|++++..+..| .+|+++|+..|+.+++++|+++|
T Consensus 151 v~~Ll~~g~~~~~~d~~g~TpL~~A~-----~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g 225 (413)
T PHA02875 151 IELLIDHKACLDIEDCCGCTPLIIAM-----AKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG 225 (413)
T ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Confidence 99999999999999999999999999 7899999999999999999988776 47899999999999999999999
Q ss_pred CCccCC---CCCCCcHHHHHHHc---CCHHHHHHHH
Q psy9384 581 ADQDHI---DKSGRTPLWAAASM---GHASCVALLL 610 (978)
Q Consensus 581 ~~~~~~---~~~~~t~L~~A~~~---~~~~~v~~Ll 610 (978)
++++.. +..+.||++.+... ...+.++.++
T Consensus 226 ad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li 261 (413)
T PHA02875 226 ADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI 261 (413)
T ss_pred cCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence 999865 55678898876542 3344444444
No 36
>KOG4412|consensus
Probab=99.98 E-value=3.2e-31 Score=230.84 Aligned_cols=202 Identities=35% Similarity=0.479 Sum_probs=117.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCC-CCccCCC-CCCChhhhhhhccCCCCChHHHHHHHH-hCCCCCCCCCCCCCCHHHH
Q psy9384 487 RTALIASAYMGHADIVSSILEYDA-DINQQDN-DGRTALSVSALCVPSSDGYAKVVSILL-EKGAKVDHEDREGMTPLLV 563 (978)
Q Consensus 487 ~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~ 563 (978)
.++.+.++......-++-+++... +++.++. +++||||+|| +.|+.+++.+|+ ..+..+|.+|..|+||||.
T Consensus 4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~-----S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhi 78 (226)
T KOG4412|consen 4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWAC-----SFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHI 78 (226)
T ss_pred cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeee-----ecCchhHHHHHHhcCCCCCCCccccCCchhhh
Confidence 344555555555555555555443 4444444 5666666666 556666666666 3345555555556666666
Q ss_pred HHHcCCHHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384 564 AAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642 (978)
Q Consensus 564 a~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~L 642 (978)
|+..|+.++|+.|+.+ |+++|..+..|.|+||+|+..|..+++++|+++|+.++.+|..|+||||.|+..|+++++++|
T Consensus 79 a~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~L 158 (226)
T KOG4412|consen 79 AASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYL 158 (226)
T ss_pred hhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHH
Confidence 6666666666666555 566665555666666666666666666666666665666666666666666666666666666
Q ss_pred HHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy9384 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708 (978)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 708 (978)
+..| ..+|.+|..|+||||.|...|+.++..+|+.+|++++..|+.| ||+-
T Consensus 159 i~~~--------------a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~ 209 (226)
T KOG4412|consen 159 ISQG--------------APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALR 209 (226)
T ss_pred HhcC--------------CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHH
Confidence 6555 4555555666666666555555666666666666655555555 5543
No 37
>KOG4369|consensus
Probab=99.97 E-value=1e-30 Score=284.50 Aligned_cols=316 Identities=20% Similarity=0.206 Sum_probs=283.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC-CCC
Q psy9384 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ-VDN 701 (978)
Q Consensus 623 ~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~ 701 (978)
-.|+|-.||..|+.|+++.|+.+| .++..+|..|.+||.+|+..||..+|+.|+++.++++. .|.
T Consensus 757 ~~t~LT~acaggh~e~vellv~rg--------------aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdr 822 (2131)
T KOG4369|consen 757 IKTNLTSACAGGHREEVELLVVRG--------------ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR 822 (2131)
T ss_pred ccccccccccCccHHHHHHHHHhc--------------ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc
Confidence 357888999999999999999999 78889999999999999999999999999999999885 477
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCccccccccc
Q psy9384 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKF 781 (978)
Q Consensus 702 ~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~ 781 (978)
.+.|+|.+|+..|+.++|++||.. |++-..++...+|||..|. ..+..++++.|+ +.| +.++.+.
T Consensus 823 tkdt~lSlacsggr~~vvelLl~~-gankehrnvsDytPlsla~-----Sggy~~iI~~ll----S~G-----seInSrt 887 (2131)
T KOG4369|consen 823 TKDTMLSLACSGGRTRVVELLLNA-GANKEHRNVSDYTPLSLAR-----SGGYTKIIHALL----SSG-----SEINSRT 887 (2131)
T ss_pred ccCceEEEecCCCcchHHHHHHHh-hccccccchhhcCchhhhc-----CcchHHHHHHHh----hcc-----ccccccc
Confidence 889999999999999999999998 9999999999999999999 899999999999 999 8777775
Q ss_pred C--CCCccchHHHhhchHHHHHHHHHhc-------ccccchhhhhhhhhhhcccccccchhhhcccCCCccccccccccc
Q psy9384 782 S--TTNPHISRQEYKKRLHILRKIISIA-------NNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRR 852 (978)
Q Consensus 782 ~--~g~t~l~~a~~~g~~~i~~~l~~~~-------~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~t 852 (978)
. -|.+||..|...|+....+.|++.+ ..+-+|+|. +|+..|+.+ ++..||.. .+++..+...|.|
T Consensus 888 gSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTalt--la~fqgr~e---vv~lLLa~-~anvehRaktglt 961 (2131)
T KOG4369|consen 888 GSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALT--LALFQGRPE---VVFLLLAA-QANVEHRAKTGLT 961 (2131)
T ss_pred ccccCcchhhhhhhccccHHHHHHhcccchhcccccccccccee--eccccCcch---HHHHHHHH-hhhhhhhcccCCc
Confidence 4 4778999999999999999999988 344578999 999999999 99999999 9999999999999
Q ss_pred ccccccc-----hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcC
Q psy9384 853 QTSSSSA-----VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSG 927 (978)
Q Consensus 853 pl~~a~~-----~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 927 (978)
||+-++. +-.+|+..|+++|..-..+ .+.|+|.+++..||...|..|+...|.++.++++|.|+|-.|+..|
T Consensus 962 plme~AsgGyvdvg~~li~~gad~nasPvp~---T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg 1038 (2131)
T KOG4369|consen 962 PLMEMASGGYVDVGNLLIAAGADTNASPVPN---TWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGG 1038 (2131)
T ss_pred ccchhhcCCccccchhhhhcccccccCCCCC---cCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCC
Confidence 9998777 8899999999998644111 2479999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCccccc--chhhhhhhhcChhHHHHHHHhhcCCCCCC
Q psy9384 928 HETVLRLLKQYADDSEYFVH--YYYYYNSAKSGHETVLRLLKQYADDIPVV 976 (978)
Q Consensus 928 ~~~~v~~L~~~g~~~~~~~~--~~~l~~A~~~~~~~~~~~L~~~~~~~~~~ 976 (978)
+...+.+|++.+++.+.... .++++.|...||++||+|...+.--+|.|
T Consensus 1039 ~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~atqfps~ 1089 (2131)
T KOG4369|consen 1039 ALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPPATQFPSV 1089 (2131)
T ss_pred ccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCchhcCCcH
Confidence 99999999999999998764 47899999999999999999886655544
No 38
>KOG0509|consensus
Probab=99.95 E-value=5.8e-28 Score=254.37 Aligned_cols=209 Identities=35% Similarity=0.473 Sum_probs=186.8
Q ss_pred chHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcC
Q psy9384 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSASWGG 422 (978)
Q Consensus 344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g 422 (978)
..-+..|+..|.++.|+.+++. .+.+++..|..|.|+||+||.+++.+++++|+++|+++|... .-+.||||||+++|
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~-~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G 123 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVES-EGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG 123 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhh-cCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence 3457899999999999999994 288899999999999999999999999999999999999888 67889999999999
Q ss_pred CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q psy9384 423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502 (978)
Q Consensus 423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v 502 (978)
+..+|++|+++|+|++.+|.+|.+|+|.|+..|+.-+ +-||+.+|+++|.+|..|+|||++|++.|+...+
T Consensus 124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~---------vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v 194 (600)
T KOG0509|consen 124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTAL---------VAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFV 194 (600)
T ss_pred cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHH---------HHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999999999999998889
Q ss_pred HHHHHcCCCCccCC-CCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q psy9384 503 SSILEYDADINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE 567 (978)
Q Consensus 503 ~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~ 567 (978)
..||..|+.+...| ..|.||||+|+ -.|+...+.++++.|++.+..+..|.||+..|...
T Consensus 195 ~~LL~f~a~~~~~d~~~g~TpLHwa~-----~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 195 RRLLKFGASLLLTDDNHGNTPLHWAV-----VGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred HHHHHhcccccccccccCCchHHHHH-----hcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence 99999999988887 78889998888 56788888877777788888888888888888666
No 39
>KOG0509|consensus
Probab=99.95 E-value=1.1e-27 Score=252.26 Aligned_cols=209 Identities=37% Similarity=0.493 Sum_probs=197.6
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHhcC
Q psy9384 378 GQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAWGG 455 (978)
Q Consensus 378 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~ 455 (978)
...-+..|++.|.++-|+.|++. |.+++..|..|.|+||+||.+++.+++++|+++|+++|..+ .-+.||||+|+++|
T Consensus 44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G 123 (600)
T KOG0509|consen 44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG 123 (600)
T ss_pred hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence 35668999999999999999998 99999999999999999999999999999999999999887 66889999999999
Q ss_pred CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC
Q psy9384 456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG 535 (978)
Q Consensus 456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~ 535 (978)
+..+ +++|+++||+++.+|.+|.+|+|.|+..|+.-+|-||+.+|++++.+|..|+|||++|+ .++
T Consensus 124 ~~~v---------v~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa-----ykg 189 (600)
T KOG0509|consen 124 HISV---------VDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA-----YKG 189 (600)
T ss_pred cHHH---------HHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH-----Hhc
Confidence 9999 99999999999999999999999999999999999999999999999999999999999 677
Q ss_pred hHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHc
Q psy9384 536 YAKVVSILLEKGAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM 600 (978)
Q Consensus 536 ~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 600 (978)
+...+..|++-|+.++..+ ..|.||||+|+..|+..+++.|++-|++.+..+.+|.||+..|.+.
T Consensus 190 ~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 190 FALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred ccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence 7777999999999999887 8999999999999999999977777899998999999999999877
No 40
>KOG4369|consensus
Probab=99.94 E-value=7.4e-28 Score=262.36 Aligned_cols=322 Identities=30% Similarity=0.408 Sum_probs=294.7
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc-CCCCCCcHHHHHHhc
Q psy9384 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC-SDMGGRTALRAAAWG 454 (978)
Q Consensus 376 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~~~t~l~~A~~~ 454 (978)
.+-.|+|..||..|+.|+|++|+.+|+++..+|..|.+||.+|+..||..+|+.|+.+.+++.. .|..+.|+|.+||..
T Consensus 755 ~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg 834 (2131)
T KOG4369|consen 755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG 834 (2131)
T ss_pred ccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence 3557899999999999999999999999999999999999999999999999999999888875 466788999999999
Q ss_pred CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCC--CCCChhhhhhhccCC
Q psy9384 455 GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN--DGRTALSVSALCVPS 532 (978)
Q Consensus 455 ~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~~~t~l~~a~~~~~~ 532 (978)
|+.++ +++||..|++-..++...+|||..|..-|..++|+.|+.+|++++.+.. -|..||++|.
T Consensus 835 gr~~v---------velLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlat----- 900 (2131)
T KOG4369|consen 835 GRTRV---------VELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLAT----- 900 (2131)
T ss_pred CcchH---------HHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhh-----
Confidence 99999 9999999999888888999999999999999999999999999887754 6789999998
Q ss_pred CCChHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384 533 SDGYAKVVSILLEKGAKVDHEDR-EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611 (978)
Q Consensus 533 ~~~~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~ 611 (978)
-+++.+.++.|++.|.|+|.... ...|+|..|+..|+.+++.+|+...+++..+-+.|-|||+-++..|.+++-..|+.
T Consensus 901 mngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~ 980 (2131)
T KOG4369|consen 901 MNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIA 980 (2131)
T ss_pred hccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhh
Confidence 57999999999999999987644 45689999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHH
Q psy9384 612 WGAYVDTI--DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689 (978)
Q Consensus 612 ~g~~~~~~--~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 689 (978)
.|+|.+.. -....|+|-.++..||...+..|++.. ..++.++..|.|+|.+|+..|+...+..|
T Consensus 981 ~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~--------------atv~v~NkkG~T~Lwla~~Gg~lss~~il 1046 (2131)
T KOG4369|consen 981 AGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD--------------ATVRVPNKKGCTVLWLASAGGALSSCPIL 1046 (2131)
T ss_pred cccccccCCCCCcCCccceeecCCCchhhhHHhhCCc--------------cceecccCCCCcccchhccCCccccchHH
Confidence 99998753 345678899999999999999999876 66778899999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q psy9384 690 LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725 (978)
Q Consensus 690 l~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ 725 (978)
+++++|++..|+...++++.|.+.|+++||++....
T Consensus 1047 ~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1047 VSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred hhcccChhhhhcccccccHHHHHhchhheeccccCc
Confidence 999999999999999999999999999999998764
No 41
>PHA02795 ankyrin-like protein; Provisional
Probab=99.93 E-value=3.8e-25 Score=233.31 Aligned_cols=227 Identities=17% Similarity=0.107 Sum_probs=195.9
Q ss_pred HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHh--cCCceeeeeccc
Q psy9384 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN------CSDMGGRTALRAAAW--GGHLEVTIVLGP 465 (978)
Q Consensus 394 v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~------~~~~~~~t~l~~A~~--~~~~~i~~~~~~ 465 (978)
-+|++.+|+++|.+...+ +|+..+..|++++|+++|++++ .++..++|+||+++. .|+.++
T Consensus 65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei------ 133 (437)
T PHA02795 65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI------ 133 (437)
T ss_pred HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHH------
Confidence 478999999999887776 8999999999999999999988 778889999999999 888888
Q ss_pred hHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCC------CCCCChhhhhhhccCCCCChHHH
Q psy9384 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD------NDGRTALSVSALCVPSSDGYAKV 539 (978)
Q Consensus 466 ~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------~~~~t~l~~a~~~~~~~~~~~~~ 539 (978)
+++|+++||+++.. .+.||+|.|+..++.+++++|+++|++..... ..+.++++.+. ..+..++
T Consensus 134 ---V~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~-----~~~~~eI 203 (437)
T PHA02795 134 ---VDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVD-----EPTVLEI 203 (437)
T ss_pred ---HHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHH-----hcCHHHH
Confidence 99999999999874 45899999999999999999999998543221 23556777776 7889999
Q ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC--------HHHHHHHHH
Q psy9384 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH--------ASCVALLLF 611 (978)
Q Consensus 540 v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~--------~~~v~~Ll~ 611 (978)
+++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+ .+++++|++
T Consensus 204 ve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~ 283 (437)
T PHA02795 204 YKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR 283 (437)
T ss_pred HHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999884 699999999
Q ss_pred CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384 612 WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646 (978)
Q Consensus 612 ~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~ 646 (978)
+|++++..... .+.. ...+.++++.++...
T Consensus 284 ~gadI~~~~~~---~~~~--~~~n~~~ik~lI~y~ 313 (437)
T PHA02795 284 EPLSIDCIKLA---ILNN--TIENHDVIKLCIKYF 313 (437)
T ss_pred CCCCCCchhHH---hhhc--ccchHHHHHHHHHHH
Confidence 99988764332 2111 123778999998876
No 42
>PHA02795 ankyrin-like protein; Provisional
Probab=99.93 E-value=6.8e-25 Score=231.44 Aligned_cols=239 Identities=17% Similarity=0.129 Sum_probs=191.2
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------CCCCCCCcHHHHHHH--cCCHHHHHHHH
Q psy9384 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD------HIDKSGRTPLWAAAS--MGHASCVALLL 610 (978)
Q Consensus 539 ~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~------~~~~~~~t~L~~A~~--~~~~~~v~~Ll 610 (978)
..++++.+|++++.....+ +|+..+..+++++|+++|++++ ..+..++|+||.++. .|+.+++++|+
T Consensus 64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI 138 (437)
T PHA02795 64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV 138 (437)
T ss_pred HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence 4578889999888776665 7888899999999999999988 667788999999999 89999999999
Q ss_pred HCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHH
Q psy9384 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690 (978)
Q Consensus 611 ~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 690 (978)
++|++++.. ++.||+|.|+..++.+++++|+++|+.... ..+.+..+..+.+++|.|...++.+++++|+
T Consensus 139 ~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n--------~~~~~l~~~~~~t~l~~a~~~~~~eIve~LI 208 (437)
T PHA02795 139 DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDEN--------DVKLDLYKIIQYTRGFLVDEPTVLEIYKLCI 208 (437)
T ss_pred HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccc--------cccchhhhhhccchhHHHHhcCHHHHHHHHH
Confidence 999999874 458999999999999999999999952100 0111122345779999999999999999999
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhccc---chhHHHHHHHHHHHHHHh
Q psy9384 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVT---KLSFWYLLIQPLLNIILS 767 (978)
Q Consensus 691 ~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~~~~~~Ll~~~~~ 767 (978)
++|+++|.+|..|.||||+|+..|+.+++++|+++ |++++.++..|.||||+|+.+.. ...++.+++++|+ +
T Consensus 209 s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL----~ 283 (437)
T PHA02795 209 PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLEN-GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILL----R 283 (437)
T ss_pred hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHH----h
Confidence 99999999999999999999999999999999997 99999999999999999994321 1123689999999 8
Q ss_pred cCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhc
Q psy9384 768 SLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIA 807 (978)
Q Consensus 768 ~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~ 807 (978)
+| ++++.....+ +.. ...+.++++.++...
T Consensus 284 ~g-----adI~~~~~~~---~~~--~~~n~~~ik~lI~y~ 313 (437)
T PHA02795 284 EP-----LSIDCIKLAI---LNN--TIENHDVIKLCIKYF 313 (437)
T ss_pred CC-----CCCCchhHHh---hhc--ccchHHHHHHHHHHH
Confidence 88 6666543221 111 112456777766644
No 43
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.92 E-value=2.9e-24 Score=212.46 Aligned_cols=172 Identities=18% Similarity=0.281 Sum_probs=104.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCCCCCC-CCCCcHHHHH
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG--FVDAVQILLEAGANINHTD-CEGWTPLRSA 418 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A 418 (978)
.+.+||++|+..|+++.|+.|++ . .+..+..|.||||+|+..+ +.+++++|++.|++++.++ ..|.||||+|
T Consensus 20 ~~~~pL~~A~~~~~~~~vk~Li~--~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a 94 (209)
T PHA02859 20 RYCNPLFYYVEKDDIEGVKKWIK--F---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY 94 (209)
T ss_pred ccCcHHHHHHHhCcHHHHHHHHH--h---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence 34566666666666666666665 1 3445556666666666533 5666666666666666664 3566666665
Q ss_pred HHc---CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc--CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHH-
Q psy9384 419 SWG---GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG--GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA- 492 (978)
Q Consensus 419 ~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~--~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~- 492 (978)
+.. ++.+++++|+++|++++..+..|.||||+|+.. ++.++ +++|++.|++++.++..|.||||.
T Consensus 95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~i---------v~~Li~~gadin~~d~~g~t~Lh~~ 165 (209)
T PHA02859 95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINV---------IKLLIDSGVSFLNKDFDNNNILYSY 165 (209)
T ss_pred HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHH---------HHHHHHcCCCcccccCCCCcHHHHH
Confidence 542 356666666666666666666666666665542 34455 666666666666666666666663
Q ss_pred HHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527 (978)
Q Consensus 493 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 527 (978)
|+..++.+++++|+++|++++.++..|.||+++|.
T Consensus 166 a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~ 200 (209)
T PHA02859 166 ILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIK 200 (209)
T ss_pred HHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 34455666666666666666666666666666665
No 44
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.92 E-value=3.7e-24 Score=211.68 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=144.2
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcCC-CCCCcHHHHH
Q psy9384 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG--HSAVVKLLLQSGADVNCSD-MGGRTALRAA 451 (978)
Q Consensus 375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g--~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A 451 (978)
.+.+.||||+|+..|+.++|+.|++. ++..+..|.||||+|+..+ +.+++++|+++|++++..+ ..|.||||+|
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a 94 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY 94 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence 34668999999999999999999975 4667888999999998854 8999999999999999886 4789999988
Q ss_pred Hhc---CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCccCCCCCCChhhhh
Q psy9384 452 AWG---GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY--MGHADIVSSILEYDADINQQDNDGRTALSVS 526 (978)
Q Consensus 452 ~~~---~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 526 (978)
+.. ++.++ +++|+++|++++.++..|.||||.|+. .++.+++++|+++|++++.++..|.||||.+
T Consensus 95 ~~~~~~~~~ei---------v~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~ 165 (209)
T PHA02859 95 LSFNKNVEPEI---------LKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSY 165 (209)
T ss_pred HHhCccccHHH---------HHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Confidence 754 35666 999999999999999999999998876 3578888888888888888888888888754
Q ss_pred hhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy9384 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG 568 (978)
Q Consensus 527 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~ 568 (978)
+. ..++.+++++|++.|++++.++..|.|||++|+.++
T Consensus 166 a~----~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 166 IL----FHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HH----hcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 32 356677788888888887777777788887776553
No 45
>KOG0502|consensus
Probab=99.90 E-value=2.1e-24 Score=194.43 Aligned_cols=261 Identities=30% Similarity=0.323 Sum_probs=175.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCH
Q psy9384 346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHS 424 (978)
Q Consensus 346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~ 424 (978)
.++.+...+-.+.-..+...+. ..+...|.+.+-.|.+.|+.+++..++.-..+ +...+..|+.+++.|+-.++.
T Consensus 34 ~~~~~~~m~~t~p~~~l~~~~s----~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~ 109 (296)
T KOG0502|consen 34 ELFEQVEMGTTEPRCALTAEIS----ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSV 109 (296)
T ss_pred HHHHHhhccccchhHHHHHHHH----HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCc
Confidence 4555555555544444444211 12334455556667777777766666554333 344455677777777777777
Q ss_pred HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384 425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504 (978)
Q Consensus 425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~ 504 (978)
+.+..++.+|+..|..+..+.+|+.+++...+.+. +..+.+ ..+|..|+.|.|||++|+..|++++|++
T Consensus 110 ~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~---------~~~~~~--n~VN~~De~GfTpLiWAaa~G~i~vV~f 178 (296)
T KOG0502|consen 110 DKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDV---------VDLLVN--NKVNACDEFGFTPLIWAAAKGHIPVVQF 178 (296)
T ss_pred ceeeeeecccccCCccccccCChhhHHHHHHHHHH---------HHHHhh--ccccCccccCchHhHHHHhcCchHHHHH
Confidence 77777777777777767777777777776666554 444443 3456677777777777777777777777
Q ss_pred HHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy9384 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD 584 (978)
Q Consensus 505 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~ 584 (978)
||+.|++++.......++|.+|+ +.|+.++|++|+.++.++|..|..|.|||.+|++.++.++++.|+..|++++
T Consensus 179 LL~~GAdp~~lgk~resALsLAt-----~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t 253 (296)
T KOG0502|consen 179 LLNSGADPDALGKYRESALSLAT-----RGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT 253 (296)
T ss_pred HHHcCCChhhhhhhhhhhHhHHh-----cCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence 77777777777777777777777 6777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q psy9384 585 HIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL 627 (978)
Q Consensus 585 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 627 (978)
..+..|++++..|+..|.. +++..+++.+....++..-++|+
T Consensus 254 ~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~ 295 (296)
T KOG0502|consen 254 QEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPL 295 (296)
T ss_pred cccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCC
Confidence 7777777777777777766 66666666555555555555544
No 46
>KOG0502|consensus
Probab=99.90 E-value=4.3e-24 Score=192.40 Aligned_cols=236 Identities=32% Similarity=0.345 Sum_probs=208.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384 341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW 420 (978)
Q Consensus 341 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 420 (978)
..|...+-.+...++-+++.....-+.... ...+..|+++++.|+-.|+.+.+..++.+|...|..+-.+++|+.+++.
T Consensus 60 ~lge~~~~~~~~s~nsd~~v~s~~~~~~~~-~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVh 138 (296)
T KOG0502|consen 60 ALGESLLTVAVRSGNSDVAVQSAQLDPDAI-DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVH 138 (296)
T ss_pred hcCCcccchhhhcCCcHHHHHhhccCCCCC-CCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHH
Confidence 445555667778888888888877434443 3456679999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500 (978)
Q Consensus 421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~ 500 (978)
..+++.+..+.++ .+|..|+.|.|||.||+..|+.++ |++|++.|++++...++..++|..|++.|..+
T Consensus 139 ql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~v---------V~fLL~~GAdp~~lgk~resALsLAt~ggytd 207 (296)
T KOG0502|consen 139 QLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPV---------VQFLLNSGADPDALGKYRESALSLATRGGYTD 207 (296)
T ss_pred HHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHH---------HHHHHHcCCChhhhhhhhhhhHhHHhcCChHH
Confidence 9999999888876 578889999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy9384 501 IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580 (978)
Q Consensus 501 ~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g 580 (978)
+|++||+.+.++|..|.+|.|||.+|+ +.++.++++.|+..|++++..+..|++++..|+..|+- +|+..+++.
T Consensus 208 iV~lLL~r~vdVNvyDwNGgTpLlyAv-----rgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h 281 (296)
T KOG0502|consen 208 IVELLLTREVDVNVYDWNGGTPLLYAV-----RGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKH 281 (296)
T ss_pred HHHHHHhcCCCcceeccCCCceeeeee-----cCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence 999999999999999999999999999 89999999999999999999999999999999999987 888888776
Q ss_pred CCccCCCCCCCcHH
Q psy9384 581 ADQDHIDKSGRTPL 594 (978)
Q Consensus 581 ~~~~~~~~~~~t~L 594 (978)
+..+..+....+|+
T Consensus 282 ~lkl~Q~~~~~~~~ 295 (296)
T KOG0502|consen 282 ALKLCQDSEKRTPL 295 (296)
T ss_pred HHHHhhcccCCCCC
Confidence 66655555555554
No 47
>KOG0507|consensus
Probab=99.89 E-value=6.3e-23 Score=218.56 Aligned_cols=249 Identities=29% Similarity=0.358 Sum_probs=208.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccC-----------CCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEA-----------LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWT 413 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~-----------~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t 413 (978)
+-+-.|+..|+.+.+..+++...+ ...+..|.+|.|+||+||.+|+.+++++|++..+-++..+..|.+
T Consensus 5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~ 84 (854)
T KOG0507|consen 5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL 84 (854)
T ss_pred hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence 347789999999999999985322 236778889999999999999999999999999998889999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy9384 414 PLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493 (978)
Q Consensus 414 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A 493 (978)
|||+|++.|+.+++++++.++..+|.....|.+|||.|+..|+.++ +.+|+.+|++.-.++..+.|++..|
T Consensus 85 plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dv---------v~~Ll~~~adp~i~nns~~t~ldlA 155 (854)
T KOG0507|consen 85 PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEV---------VFYLLKKNADPFIRNNSKETVLDLA 155 (854)
T ss_pred eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHH---------HHHHHhcCCCccccCcccccHHHHH
Confidence 9999999999999999999998899999999999999999999999 9999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy9384 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC 573 (978)
Q Consensus 494 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv 573 (978)
++.|..++|+.|++....... +...| -..++..+.+|+|.|+++|+.+++
T Consensus 156 ~qfgr~~Vvq~ll~~~~~~~~----------------------------~~~~~--~~~~~~~~~~plHlaakngh~~~~ 205 (854)
T KOG0507|consen 156 SRFGRAEVVQMLLQKKFPVQS----------------------------SLRVG--DIKRPFPAIYPLHLAAKNGHVECM 205 (854)
T ss_pred HHhhhhHHHHHHhhhccchhh----------------------------cccCC--CCCCCCCCcCCcchhhhcchHHHH
Confidence 999999999999987221100 11222 122445566788888888888888
Q ss_pred HHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHc
Q psy9384 574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633 (978)
Q Consensus 574 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 633 (978)
+.|++.|.++|.....| |+||.|+..|..+++.+|++.|.+....+.+|+|.|.+-...
T Consensus 206 ~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~ 264 (854)
T KOG0507|consen 206 QALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL 264 (854)
T ss_pred HHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence 88888888888665554 788888888888888888888888888888888887765543
No 48
>KOG0507|consensus
Probab=99.88 E-value=1.9e-22 Score=214.93 Aligned_cols=263 Identities=21% Similarity=0.177 Sum_probs=213.0
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCc
Q psy9384 626 VLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA 705 (978)
Q Consensus 626 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t 705 (978)
-+.-|++.|+.+.+..|++.... ..-...........|..|.+|.|+||.|+.+|+.+++++|+++.+-++.+|..|.+
T Consensus 6 el~~a~ka~d~~tva~ll~~~~~-r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~ 84 (854)
T KOG0507|consen 6 ELIDACKAGDYDTVALLLSSKKG-RSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL 84 (854)
T ss_pred hHHHhhhcccHHHHHHhccCCCC-CCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence 35678888888888888876421 11111112233667888899999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCC
Q psy9384 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTN 785 (978)
Q Consensus 706 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~ 785 (978)
|||+|+.+|+.++++.|+.+ +..+|..+..|.||||.|+ ..++.+++.+|+ .+| ++....++.+.
T Consensus 85 plhlaaw~g~~e~vkmll~q-~d~~na~~~e~~tplhlaa-----qhgh~dvv~~Ll----~~~-----adp~i~nns~~ 149 (854)
T KOG0507|consen 85 PLHLAAWNGNLEIVKMLLLQ-TDILNAVNIENETPLHLAA-----QHGHLEVVFYLL----KKN-----ADPFIRNNSKE 149 (854)
T ss_pred eEEehhhcCcchHHHHHHhc-ccCCCcccccCcCccchhh-----hhcchHHHHHHH----hcC-----CCccccCcccc
Confidence 99999999999999999998 8999999999999999999 999999999999 999 99999999999
Q ss_pred ccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc-----h
Q psy9384 786 PHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA-----V 860 (978)
Q Consensus 786 t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~-----~ 860 (978)
|++..|++.|..++++.|+... - ++.++... | -..++..+.+|+|.|+. +
T Consensus 150 t~ldlA~qfgr~~Vvq~ll~~~-----~-----------------~~~~~~~~-~--~~~~~~~~~~plHlaakngh~~~ 204 (854)
T KOG0507|consen 150 TVLDLASRFGRAEVVQMLLQKK-----F-----------------PVQSSLRV-G--DIKRPFPAIYPLHLAAKNGHVEC 204 (854)
T ss_pred cHHHHHHHhhhhHHHHHHhhhc-----c-----------------chhhcccC-C--CCCCCCCCcCCcchhhhcchHHH
Confidence 9999999999999999998752 0 11112222 2 33345556666666666 6
Q ss_pred hhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcC---hHHHHHHH
Q psy9384 861 PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSG---HETVLRLL 935 (978)
Q Consensus 861 v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---~~~~v~~L 935 (978)
++.|++.|.++|... ..| |+||.|+.+|..++|++|++.|.+..+++.+|+|+|++-...- ..+++-++
T Consensus 205 ~~~ll~ag~din~~t-~~g-----talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~ 276 (854)
T KOG0507|consen 205 MQALLEAGFDINYTT-EDG-----TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAV 276 (854)
T ss_pred HHHHHhcCCCccccc-ccc-----hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhh
Confidence 777777777777666 554 9999999999999999999999999999999999999877663 34454444
No 49
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.85 E-value=1.5e-20 Score=225.62 Aligned_cols=196 Identities=22% Similarity=0.305 Sum_probs=166.1
Q ss_pred cCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9384 353 ENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432 (978)
Q Consensus 353 ~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~ 432 (978)
..+.++-..+.+ .+.. ..+..+.++|+.||..|+.++++.|++.|+++|..|..|.||||+|+..|+.+++++|++
T Consensus 504 l~~l~v~~ll~~--~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~ 579 (823)
T PLN03192 504 LHDLNVGDLLGD--NGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK 579 (823)
T ss_pred hccccHHHHHhh--cccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh
Confidence 344554454544 2222 234456788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy9384 433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADI 512 (978)
Q Consensus 433 ~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 512 (978)
+|++++.+|..|.||||+|+..|+.++ +++|++.++..+. ..+.++|+.|+..|+.+++++|+++|+++
T Consensus 580 ~gadin~~d~~G~TpL~~A~~~g~~~i---------v~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi 648 (823)
T PLN03192 580 HACNVHIRDANGNTALWNAISAKHHKI---------FRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNV 648 (823)
T ss_pred cCCCCCCcCCCCCCHHHHHHHhCCHHH---------HHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence 999999999999999999999999998 9999988766543 34668999999999999999999999999
Q ss_pred ccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcC
Q psy9384 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG-MTPLLVAAFEG 568 (978)
Q Consensus 513 ~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~a~~~~ 568 (978)
+.++..|.||||.|+ ..++.+++++|+++|++++..+..+ .+|+..+....
T Consensus 649 n~~d~~G~TpLh~A~-----~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~ 700 (823)
T PLN03192 649 DSEDHQGATALQVAM-----AEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ 700 (823)
T ss_pred CCCCCCCCCHHHHHH-----HCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999998 7889999999999999999988877 88888776543
No 50
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.84 E-value=6.1e-20 Score=220.44 Aligned_cols=190 Identities=28% Similarity=0.353 Sum_probs=169.3
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9384 537 AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616 (978)
Q Consensus 537 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 616 (978)
.++-.++.+.+.. ..+....++|+.|+..|+.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++
T Consensus 507 l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi 584 (823)
T PLN03192 507 LNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV 584 (823)
T ss_pred ccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 3444555555443 23344668999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q psy9384 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696 (978)
Q Consensus 617 ~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 696 (978)
+.++.+|.||||.|+..|+.+++++|++.+. ..+ ...+.++||.|+..|+.+++++|+++|+++
T Consensus 585 n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~--------------~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi 648 (823)
T PLN03192 585 HIRDANGNTALWNAISAKHHKIFRILYHFAS--------------ISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNV 648 (823)
T ss_pred CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCc--------------ccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence 9999999999999999999999999998763 222 234679999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCC-CcHHHHHH
Q psy9384 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDG-RTALRVNM 745 (978)
Q Consensus 697 ~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g-~t~L~~a~ 745 (978)
|..|..|.||||+|+..|+.+++++|+++ |++++..+..| .||++.+.
T Consensus 649 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-GAdv~~~~~~g~~t~~~l~~ 697 (823)
T PLN03192 649 DSEDHQGATALQVAMAEDHVDMVRLLIMN-GADVDKANTDDDFSPTELRE 697 (823)
T ss_pred CCCCCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999997 99999999988 89988776
No 51
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.84 E-value=1.3e-20 Score=225.44 Aligned_cols=244 Identities=25% Similarity=0.237 Sum_probs=189.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHH-HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALN-VAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW 420 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 420 (978)
.+...++.|+..|+.+.++.+++...+.+++..|..|.|||| .|+..++.+++++|++.|+ .+..|.||||.|+.
T Consensus 16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~ 91 (743)
T TIGR00870 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL 91 (743)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence 456789999999999999999994348899999999999999 8889999999999999987 57789999999987
Q ss_pred cC---CHHHHHHHHhCCCC------CC----cCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccC----
Q psy9384 421 GG---HSAVVKLLLQSGAD------VN----CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD---- 483 (978)
Q Consensus 421 ~g---~~~iv~~Ll~~g~~------~~----~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~---- 483 (978)
.+ ...++.++...+.+ ++ .....|.||||+|+..|+.++ +++|+++|++++.++
T Consensus 92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~ei---------VklLL~~GAdv~~~~~~~~ 162 (743)
T TIGR00870 92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEI---------VKLLLERGASVPARACGDF 162 (743)
T ss_pred ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHH---------HHHHHhCCCCCCcCcCCch
Confidence 32 22344444444422 11 123468999999999999999 999999999998653
Q ss_pred ----------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC----hHHHHHHHHhCCCC
Q psy9384 484 ----------SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG----YAKVVSILLEKGAK 549 (978)
Q Consensus 484 ----------~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~----~~~~v~~Ll~~g~~ 549 (978)
..|.+||+.|+..|+.+++++|+++|++++..+..|+||||+|+........ ...+.+++++.+..
T Consensus 163 ~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~ 242 (743)
T TIGR00870 163 FVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK 242 (743)
T ss_pred hhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 2588999999999999999999999999999999999999999842110001 22345556555544
Q ss_pred C-------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHH
Q psy9384 550 V-------DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598 (978)
Q Consensus 550 ~-------~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~ 598 (978)
. +..|..|.|||+.|+..|+.+++++|++.+............+.+.+.
T Consensus 243 ~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~ 298 (743)
T TIGR00870 243 LRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSL 298 (743)
T ss_pred cCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhh
Confidence 3 556889999999999999999999999865443333334445555443
No 52
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.84 E-value=1.5e-20 Score=225.12 Aligned_cols=235 Identities=26% Similarity=0.203 Sum_probs=171.9
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHh
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEA--GANINHTDCEGWTPLR-SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~-~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~ 453 (978)
.+...++.||..|+.+.++.+++. +.++|..|..|.|||| .|+.+++.+++++|+++|+ .+..|.||||.|+.
T Consensus 16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~ 91 (743)
T TIGR00870 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL 91 (743)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence 457899999999999999999999 8999999999999999 8999999999999999987 56789999999997
Q ss_pred cCCceeeeeccchHHHHHHHHcCCC------Cc----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChh
Q psy9384 454 GGHLEVTIVLGPLCVVKLLLAAGAH------VN----AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523 (978)
Q Consensus 454 ~~~~~i~~~~~~~~vv~~Ll~~g~~------~~----~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 523 (978)
++...+ ..++.++...+.+ .+ .....|.||||.|+..|+.++|++|+++|++++.++....
T Consensus 92 ~~~~~v------~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~--- 162 (743)
T TIGR00870 92 EYVDAV------EAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF--- 162 (743)
T ss_pred ccHHHH------HHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch---
Confidence 432211 1115555554422 11 1234689999999999999999999999999985432110
Q ss_pred hhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcC--
Q psy9384 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG-- 601 (978)
Q Consensus 524 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~-- 601 (978)
+ . .+... .....|.+||+.|+..|+.+++++|+++|++++..+..|+||||.|+..+
T Consensus 163 ---~---------------~--~~~~~-~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~ 221 (743)
T TIGR00870 163 ---F---------------V--KSQGV-DSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEF 221 (743)
T ss_pred ---h---------------h--cCCCC-CcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhh
Confidence 0 0 00000 11235677888888888888888888888888878888888888887765
Q ss_pred -------CHHHHHHHHHCCCCC-------cccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9384 602 -------HASCVALLLFWGAYV-------DTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645 (978)
Q Consensus 602 -------~~~~v~~Ll~~g~~~-------~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~ 645 (978)
...+.+++++.+... +..+.+|.|||+.|+..|+.+++++|++.
T Consensus 222 ~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 222 KAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence 223445555444332 45577788888888888888888888774
No 53
>KOG0514|consensus
Probab=99.83 E-value=1.2e-20 Score=183.86 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=145.7
Q ss_pred hHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc----------hhhhhh
Q psy9384 796 RLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA----------VPSATD 865 (978)
Q Consensus 796 ~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~----------~v~~L~ 865 (978)
...+++|.++..|.+|.|+|| +++..+|++ +|+.||+..-++++.+|+.|+||+++++- +|..|.
T Consensus 253 s~~lL~yvVNlaDsNGNTALH--YsVSHaNF~---VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF 327 (452)
T KOG0514|consen 253 SPPLLEYVVNLADSNGNTALH--YAVSHANFD---VVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF 327 (452)
T ss_pred ChHHHHHHhhhhcCCCCeeee--eeecccchH---HHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH
Confidence 367889999999999999999 999999999 99999999557899999999999998876 777777
Q ss_pred hccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcC-C--CC
Q psy9384 866 EHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYA-D--DS 942 (978)
Q Consensus 866 ~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g-~--~~ 942 (978)
..| ++|.+--.-| +|+|++|+..|+.++||.||.-|||+|++|.+|.|||+.|+.+||.||+++|+..- + ..
T Consensus 328 ~mg-nVNaKAsQ~g----QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sL 402 (452)
T KOG0514|consen 328 KMG-DVNAKASQHG----QTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISL 402 (452)
T ss_pred hcc-Ccchhhhhhc----chhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccccee
Confidence 765 5666665778 99999999999999999999999999999999999999999999999999998753 3 33
Q ss_pred cccccchhhhhhhhcChhHHHHHHHhh
Q psy9384 943 EYFVHYYYYYNSAKSGHETVLRLLKQY 969 (978)
Q Consensus 943 ~~~~~~~~l~~A~~~~~~~~~~~L~~~ 969 (978)
.+..|.|+|++|.+.||.||--+|..+
T Consensus 403 tD~DgSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 403 TDVDGSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred ecCCCchhhhhHHhcCchHHHHHHHHH
Confidence 446799999999999999999888765
No 54
>KOG0514|consensus
Probab=99.83 E-value=9.8e-21 Score=184.34 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=148.1
Q ss_pred CCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCccc
Q psy9384 696 VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVE 775 (978)
Q Consensus 696 ~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~ 775 (978)
+|..|.+|+|+|||++.++++++|+.||+..-++++..+..|+||++.++....+...+.++|..|+ ..|
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF----~mg------ 330 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF----KMG------ 330 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH----hcc------
Confidence 5678899999999999999999999999997789999999999999999877666788889999998 666
Q ss_pred ccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccc
Q psy9384 776 DLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTS 855 (978)
Q Consensus 776 ~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~ 855 (978)
++|++- .+.|+|+|+ +|+..|+.+ +|+.||.. |+|+|++|.+|
T Consensus 331 nVNaKA--------------------------sQ~gQTALM--LAVSHGr~d---~vk~LLac-gAdVNiQDdDG----- 373 (452)
T KOG0514|consen 331 DVNAKA--------------------------SQHGQTALM--LAVSHGRVD---MVKALLAC-GADVNIQDDDG----- 373 (452)
T ss_pred Ccchhh--------------------------hhhcchhhh--hhhhcCcHH---HHHHHHHc-cCCCccccCCc-----
Confidence 555542 257889999 999999999 99999998 88888887766
Q ss_pred cccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHc-CCCCCCCcccCccHHHHHHHcChHHHHHH
Q psy9384 856 SSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHY-GADPKHSDHCGRNAFRVAAKSGHETVLRL 934 (978)
Q Consensus 856 ~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~~~v~~ 934 (978)
.|+|++||+.||.|||++||.. +.|....|.+|.|||.+|...||.||.-+
T Consensus 374 ----------------------------STALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~m 425 (452)
T KOG0514|consen 374 ----------------------------STALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVM 425 (452)
T ss_pred ----------------------------cHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHH
Confidence 8899999999999999999984 58888999999999999999999999999
Q ss_pred HHHc
Q psy9384 935 LKQY 938 (978)
Q Consensus 935 L~~~ 938 (978)
|..+
T Consensus 426 lYa~ 429 (452)
T KOG0514|consen 426 LYAH 429 (452)
T ss_pred HHHH
Confidence 9664
No 55
>KOG0505|consensus
Probab=99.83 E-value=7.7e-20 Score=188.84 Aligned_cols=227 Identities=22% Similarity=0.209 Sum_probs=189.5
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhH
Q psy9384 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSF 753 (978)
Q Consensus 674 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~ 753 (978)
+.-|+..+..+-+..|+..|++++..+.+|.|++|-++.-.+.+||++|+++ |++++..|..|+||||.|+ .-+
T Consensus 44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaa-----scg 117 (527)
T KOG0505|consen 44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAA-----SCG 117 (527)
T ss_pred HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhc-----ccc
Confidence 5567888999999999999999999999999999999999999999999997 9999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchh
Q psy9384 754 WYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRY 833 (978)
Q Consensus 754 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~ 833 (978)
+..++++|+ .+| +++.+.+.+|..|...+......+++..-+...
T Consensus 118 ~~~i~~~li----~~g-----A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~-------------------------- 162 (527)
T KOG0505|consen 118 YLNIVEYLI----QHG-----ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQ-------------------------- 162 (527)
T ss_pred cHHHHHHHH----Hhh-----hhhhhccCCCCCccccccCcchhHHHHHHHHHh--------------------------
Confidence 999999999 999 999999999999988877666666555544322
Q ss_pred hhcccCCCcccc-cccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCC
Q psy9384 834 LCSLNDGHLIHA-VDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHS 912 (978)
Q Consensus 834 ~Ll~~~g~~~~~-~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~ 912 (978)
|+++++ .....++-|. -+...+..|...+... ..| .|+||+|+..|..++.++|+++|.+++.+
T Consensus 163 ------gi~iea~R~~~e~~ml~----D~~q~l~~G~~~d~~~-~rG----~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~ 227 (527)
T KOG0505|consen 163 ------GIDIEAARKAEEQTMLD----DARQWLNAGAELDARH-ARG----ATALHVAAANGYTEVAALLLQAGYSVNIK 227 (527)
T ss_pred ------cccHHHHhhhhHHHHHH----HHHHHHhccccccccc-ccc----chHHHHHHhhhHHHHHHHHHHhccCcccc
Confidence 111111 0000111111 1233444777777777 558 99999999999999999999999999999
Q ss_pred cccCccHHHHHHHcChHHHHHHHHHcCCCCcc--cccchhhhhhhh
Q psy9384 913 DHCGRNAFRVAAKSGHETVLRLLKQYADDSEY--FVHYYYYYNSAK 956 (978)
Q Consensus 913 d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~--~~~~~~l~~A~~ 956 (978)
|..|+||||.|+.-|+.+++++|+++|+++++ ..|.+|+.+|.+
T Consensus 228 D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 228 DYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred cccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence 99999999999999999999999999999988 458899988764
No 56
>KOG0505|consensus
Probab=99.81 E-value=6.4e-20 Score=189.42 Aligned_cols=230 Identities=30% Similarity=0.427 Sum_probs=150.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384 346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA 425 (978)
Q Consensus 346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~ 425 (978)
.+..|+..|+++-+..|+. .+..++..+.+|.|+||-+|...+.+||++|+++|+++|..|..+|||||.|+..|+..
T Consensus 43 ~~l~A~~~~d~~ev~~ll~--~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~ 120 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLN--RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN 120 (527)
T ss_pred HHHhccccccHHHHHHHhc--cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence 4667788888888888888 66777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSS 504 (978)
Q Consensus 426 iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~ 504 (978)
++.+|+.+|+++...+..|..|...+.-....++ +..-.. .|.++ ..+-...
T Consensus 121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~---------l~~~~~r~gi~i-----------ea~R~~~------- 173 (527)
T KOG0505|consen 121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDV---------LETEMARQGIDI-----------EAARKAE------- 173 (527)
T ss_pred HHHHHHHhhhhhhhccCCCCCccccccCcchhHH---------HHHHHHHhcccH-----------HHHhhhh-------
Confidence 8888888888887777777777766654433332 221111 11111 1100000
Q ss_pred HHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy9384 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD 584 (978)
Q Consensus 505 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~ 584 (978)
......-+...+..|...+.....|.|.||.|+.+|+.++.++|++.|.+++
T Consensus 174 ----------------------------e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~ 225 (527)
T KOG0505|consen 174 ----------------------------EQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVN 225 (527)
T ss_pred ----------------------------HHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcc
Confidence 0011112223333555555555556666666666666666666666666666
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHH
Q psy9384 585 HIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632 (978)
Q Consensus 585 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 632 (978)
..|..|++|||.|+..|..++.++|+++|++.+.....|.+|+..|..
T Consensus 226 ~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 226 IKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred cccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence 666666666666666666666666666666666666666666655543
No 57
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.80 E-value=3.5e-19 Score=169.21 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=117.8
Q ss_pred cCCCccccCCCCCcHHHHHHHhCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHhCCCCCCc
Q psy9384 367 EALDLELVDKHGQTALNVAAHQGFV----DAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV---VKLLLQSGADVNC 439 (978)
Q Consensus 367 ~~~~~~~~~~~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~i---v~~Ll~~g~~~~~ 439 (978)
.+++++..+..+.++||+||+.|+. +++++|++.|+.++.+|..|+||||+|+..|+.+. +++|++.|++++.
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~ 88 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA 88 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence 3456666777788888888888887 56667778888888888888888888888887654 7888888888888
Q ss_pred CC-CCCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCC
Q psy9384 440 SD-MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517 (978)
Q Consensus 440 ~~-~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 517 (978)
++ ..|.||||+|+..++.++ +++|+. .|++++..+..|.||||+|+..++.+++++|+++|++++.++.
T Consensus 89 ~d~~~g~TpLh~A~~~g~~~i---------v~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 159 (166)
T PHA02743 89 RELGTGNTLLHIAASTKNYEL---------AEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS 159 (166)
T ss_pred CCCCCCCcHHHHHHHhCCHHH---------HHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence 87 478888888888888888 888884 7888888888888888888888888888888888888887776
Q ss_pred CCC
Q psy9384 518 DGR 520 (978)
Q Consensus 518 ~~~ 520 (978)
.|.
T Consensus 160 ~~~ 162 (166)
T PHA02743 160 IGL 162 (166)
T ss_pred CCc
Confidence 553
No 58
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.78 E-value=2.8e-18 Score=163.04 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=99.2
Q ss_pred CCCCccCCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHH---HHHHHHHCCCcccc
Q psy9384 579 NEADQDHIDKSGRTPLWAAASMGHA----SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID---VVNQLLDRGMILGC 651 (978)
Q Consensus 579 ~g~~~~~~~~~~~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~---iv~~Ll~~~~~~~~ 651 (978)
++++++..+..+.++++.|++.|+. +++++|++.|+.++..+..|+||||+|+..|+.+ ++++|+++|
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G----- 83 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG----- 83 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-----
Confidence 3455555556666677777777766 4555566666666666777777777777766544 367777777
Q ss_pred ccCCCCCCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCC
Q psy9384 652 LAGGRQTGSLDEQHRD-NCGWTPLHYAAIEGHEEVCRALLE-AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729 (978)
Q Consensus 652 ~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~ 729 (978)
.+++.++ ..|.||||+|+..++.+++++|+. .|++++..+..|.||||+|+..++.+++++|+++ |++
T Consensus 84 ---------adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~ 153 (166)
T PHA02743 84 ---------ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN-GAV 153 (166)
T ss_pred ---------CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 5666666 467777777777777777777774 6777777777777777777777777777777775 777
Q ss_pred CcCCCCCCC
Q psy9384 730 VNQKSHDGR 738 (978)
Q Consensus 730 ~~~~~~~g~ 738 (978)
++.++..|.
T Consensus 154 ~~~~~~~~~ 162 (166)
T PHA02743 154 CDDPLSIGL 162 (166)
T ss_pred CCCcccCCc
Confidence 777666553
No 59
>KOG0512|consensus
Probab=99.77 E-value=4.2e-18 Score=148.00 Aligned_cols=146 Identities=32% Similarity=0.318 Sum_probs=129.6
Q ss_pred chHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy9384 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH 423 (978)
Q Consensus 344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~ 423 (978)
...+.+|+..+.+..|+.|++. ....+|.+|.+++||||.|+++|+.+||+.|+..|++++.+...||||||-||.-++
T Consensus 64 ~rl~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN 142 (228)
T KOG0512|consen 64 IRLLLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN 142 (228)
T ss_pred HHHHHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence 3468899999999999999995 455689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCC
Q psy9384 424 SAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGH 498 (978)
Q Consensus 424 ~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~ 498 (978)
.+++.+|+++|+|+++......||||.|+...+.... +.+|+. .+..+...+..+.||+.+|-+.+-
T Consensus 143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t--------~~~Ll~dryi~pg~~nn~eeta~~iARRT~~ 210 (228)
T KOG0512|consen 143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDT--------LELLLHDRYIHPGLKNNLEETAFDIARRTSM 210 (228)
T ss_pred hhHHHHHHhccCcccccccccchhhHHhhcccchHHH--------HHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence 9999999999999999999999999999988766542 566554 567777778889999999988753
No 60
>PHA02741 hypothetical protein; Provisional
Probab=99.76 E-value=5.5e-18 Score=162.07 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=112.4
Q ss_pred cccCCCCCcHHHHHHHhCCHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcCC
Q psy9384 372 ELVDKHGQTALNVAAHQGFVDAVQILLE------AGANINHTDCEGWTPLRSASWGGH----SAVVKLLLQSGADVNCSD 441 (978)
Q Consensus 372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~~ 441 (978)
+..+..|.||||+|++.|+.++++.|+. .|++++.+|..|.||||+|+..|+ .+++++|++.|++++.++
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 3467788999999999999999998754 357788888899999999999888 588899999999998887
Q ss_pred C-CCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384 442 M-GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD 511 (978)
Q Consensus 442 ~-~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 511 (978)
. .|.||||+|+..++.++ +++|+. .|++++..+..|.|||+.|+..++.+++++|++.++.
T Consensus 95 ~~~g~TpLh~A~~~~~~~i---------v~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDL---------AEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred cCCCCCHHHHHHHcCCHHH---------HHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 88999999999999888 999987 5889888888999999999999999999999987654
No 61
>PHA02741 hypothetical protein; Provisional
Probab=99.75 E-value=1.4e-17 Score=159.26 Aligned_cols=133 Identities=21% Similarity=0.326 Sum_probs=120.6
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHHh----ccCCCccccCCCCCcHHHHHHHhCC----HHHHHHHHHCCCCCCCCC
Q psy9384 337 TMFDSKNQSVLHKLCAENNINLLKTFLKS----CEALDLELVDKHGQTALNVAAHQGF----VDAVQILLEAGANINHTD 408 (978)
Q Consensus 337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~----~~~~~~~~~~~~~~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~ 408 (978)
+..+..|.|+||+|+..|+.++++.|+.. +.+.+++.+|..|.||||+|+..|+ .+++++|++.|++++.++
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 44677899999999999999999998652 2357889999999999999999999 589999999999999998
Q ss_pred C-CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC
Q psy9384 409 C-EGWTPLRSASWGGHSAVVKLLLQ-SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH 478 (978)
Q Consensus 409 ~-~~~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~ 478 (978)
. .|.||||+|+..++.+++++|+. .|++++..+..|.|||++|+..++.++ +++|++.++.
T Consensus 95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~i---------v~~L~~~~~~ 157 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAM---------MQILREIVAT 157 (169)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHH---------HHHHHHHHHH
Confidence 5 89999999999999999999998 599999999999999999999999999 9999987654
No 62
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.74 E-value=3.3e-17 Score=167.07 Aligned_cols=154 Identities=20% Similarity=0.181 Sum_probs=121.2
Q ss_pred ccCCCCCc-HHHHHHHhCCHHHHHHHHHCCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcC-CCCCCc
Q psy9384 373 LVDKHGQT-ALNVAAHQGFVDAVQILLEAGANINHTD----CEGWTPLRSASWGGHSAVVKLLLQSGADVNCS-DMGGRT 446 (978)
Q Consensus 373 ~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~~~t 446 (978)
.+|..+.| +||.|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.. +..|.|
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T 106 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT 106 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence 45566655 5677777789999999999999998863 57899999999999999999999999999975 457889
Q ss_pred HHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhh
Q psy9384 447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526 (978)
Q Consensus 447 ~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 526 (978)
|||.|+..++.++ +++|+.+|++++..+..|.|||+.|+..++.+++..+... . .+..+.+|..+.
T Consensus 107 pLh~Aa~~~~~ei---------vklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~ 172 (300)
T PHA02884 107 PLYISVLHGCLKC---------LEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--E---ISNFYKHPKKIL 172 (300)
T ss_pred HHHHHHHcCCHHH---------HHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--c---ccccccChhhhh
Confidence 9999999999888 9999999999999999999999999998888877665432 2 233445565543
Q ss_pred hhccCCCCChHHHHHHHHhCCC
Q psy9384 527 ALCVPSSDGYAKVVSILLEKGA 548 (978)
Q Consensus 527 ~~~~~~~~~~~~~v~~Ll~~g~ 548 (978)
+..+++++|+.++.
T Consensus 173 --------~n~ei~~~Lish~v 186 (300)
T PHA02884 173 --------INFDILKILVSHFI 186 (300)
T ss_pred --------ccHHHHHHHHHHHH
Confidence 24677777777654
No 63
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.74 E-value=4.6e-17 Score=166.04 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=130.8
Q ss_pred ccCCCc-hHHHHHHHcCCHHHHHHHHHhccCCCcccc----CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCC
Q psy9384 339 FDSKNQ-SVLHKLCAENNINLLKTFLKSCEALDLELV----DKHGQTALNVAAHQGFVDAVQILLEAGANINHT-DCEGW 412 (978)
Q Consensus 339 ~~~~~~-~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~ 412 (978)
.|..+. ++|+.|+..|+.+++++|++ .|++++.. +..|.||||+|+..|+.+++++|+++|++++.+ +..|.
T Consensus 28 ~d~~~~~~lL~~A~~~~~~eivk~LL~--~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~ 105 (300)
T PHA02884 28 KNKICIANILYSSIKFHYTDIIDAILK--LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI 105 (300)
T ss_pred cCcCCCCHHHHHHHHcCCHHHHHHHHH--CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence 344443 56778888899999999999 89999987 458999999999999999999999999999986 46799
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHH
Q psy9384 413 TPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492 (978)
Q Consensus 413 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~ 492 (978)
||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.++ +..+. |.. .+..+.+|...
T Consensus 106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~---------~~~~~--~~~---~~~~~~~~~~~ 171 (300)
T PHA02884 106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFL---------AFMIC--DNE---ISNFYKHPKKI 171 (300)
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhH---------HHHhc--CCc---ccccccChhhh
Confidence 99999999999999999999999999999999999999999888887 65554 322 34556678776
Q ss_pred HHHcCCHHHHHHHHHcCC
Q psy9384 493 SAYMGHADIVSSILEYDA 510 (978)
Q Consensus 493 A~~~~~~~~v~~Ll~~g~ 510 (978)
+ ++.+++++|++++.
T Consensus 172 ~---~n~ei~~~Lish~v 186 (300)
T PHA02884 172 L---INFDILKILVSHFI 186 (300)
T ss_pred h---ccHHHHHHHHHHHH
Confidence 4 46899999999875
No 64
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.71 E-value=2.9e-17 Score=155.09 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=50.7
Q ss_pred CCCCCcHHHHHHHcCCH---HHHHHHHhCCCCCCcCC-CCCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCccc
Q psy9384 408 DCEGWTPLRSASWGGHS---AVVKLLLQSGADVNCSD-MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAA 482 (978)
Q Consensus 408 ~~~~~t~L~~A~~~g~~---~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~ 482 (978)
|..|.||||+|+..|+. +++++|++.|++++.++ ..|.||||+|+..++.++ +++|+. .|++++..
T Consensus 52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i---------~~~Ll~~~g~d~n~~ 122 (154)
T PHA02736 52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYEL---------ATWLCNQPGVNMEIL 122 (154)
T ss_pred cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHH---------HHHHHhCCCCCCccc
Confidence 44555555555555544 23455555555555554 245555555555555555 555554 35555555
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384 483 DSEGRTALIASAYMGHADIVSSILEYDAD 511 (978)
Q Consensus 483 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 511 (978)
+..|.|||++|+..|+.+++++|+++|++
T Consensus 123 ~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 123 NYAFKTPYYVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 55555555555555555555555555544
No 65
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.70 E-value=5.9e-17 Score=152.97 Aligned_cols=135 Identities=21% Similarity=0.339 Sum_probs=112.5
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHhCCHH---HHHHHHHCCCCCCCCCC-
Q psy9384 337 TMFDSKNQSVLHKLCAENNINLLKTFLKSC---EALDLELVDKHGQTALNVAAHQGFVD---AVQILLEAGANINHTDC- 409 (978)
Q Consensus 337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~---~~~~~~~~~~~~~t~L~~A~~~g~~~---~v~~Ll~~g~~~~~~~~- 409 (978)
+..|..|.||||+|+..|+...+..+.... .+..+...|..|.||||+|+..|+.+ ++++|++.|++++.++.
T Consensus 11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~ 90 (154)
T PHA02736 11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV 90 (154)
T ss_pred HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence 456778999999999999853222221100 01123456889999999999999874 68999999999999984
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCc
Q psy9384 410 EGWTPLRSASWGGHSAVVKLLLQ-SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480 (978)
Q Consensus 410 ~~~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~ 480 (978)
.|+||||+|+..|+.+++++|++ .|++++..+..|.|||++|+..|+.++ +++|+++|++.+
T Consensus 91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i---------~~~Ll~~ga~~~ 153 (154)
T PHA02736 91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKM---------MNILRAKGAQCK 153 (154)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCC
Confidence 89999999999999999999998 589999999999999999999999999 999999998764
No 66
>KOG0512|consensus
Probab=99.70 E-value=1.8e-16 Score=137.99 Aligned_cols=139 Identities=32% Similarity=0.359 Sum_probs=113.5
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCc
Q psy9384 593 PLWAAASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW 671 (978)
Q Consensus 593 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 671 (978)
.+..|+..+....|+.|++..++ +|.+|.++.||||.|+.+|+++|++.|+..| ++.+.+...|+
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g--------------An~~a~T~~GW 131 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG--------------ANKEAKTNEGW 131 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHcc--------------CCcccccccCc
Confidence 35577777888888888777665 7788888888888888888888888888888 77788888888
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC-HHHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH-YHLVEMFLEQYEANVNQKSHDGRTALRVNM 745 (978)
Q Consensus 672 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~-~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~ 745 (978)
||||.|++..+.+++-.|+++|+|+|.......||||+|+.+.+ ...+++|+...+..+..++..+.||+.+|-
T Consensus 132 TPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR 206 (228)
T KOG0512|consen 132 TPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR 206 (228)
T ss_pred cchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence 88888888888888888888888888888878888888887654 456777777778888888888888888877
No 67
>KOG0195|consensus
Probab=99.68 E-value=3.6e-17 Score=154.10 Aligned_cols=154 Identities=32% Similarity=0.424 Sum_probs=128.7
Q ss_pred HHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384 351 CAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430 (978)
Q Consensus 351 ~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~L 430 (978)
|..|+---|+..++. ...|.|.-|..|.+|||+||+.|+..+|+.|+.+|+.+|..+....||||+|+..||.++|+.|
T Consensus 8 cregna~qvrlwld~-tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkl 86 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDD-TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKL 86 (448)
T ss_pred hhcCCeEEEEEEecC-cccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHH
Confidence 344544444545543 5667888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy9384 431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA 510 (978)
Q Consensus 431 l~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~ 510 (978)
++..+|+|..+..|+|||||||.-|.-.| .+-|+..|+.++..+++|.||+..|--.-..-+.+.--++|.
T Consensus 87 l~~kadvnavnehgntplhyacfwgydqi---------aedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq 157 (448)
T KOG0195|consen 87 LSRKADVNAVNEHGNTPLHYACFWGYDQI---------AEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQ 157 (448)
T ss_pred HHHhcccchhhccCCCchhhhhhhcHHHH---------HHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999888 999999999999999999999988754433333333344676
Q ss_pred CCcc
Q psy9384 511 DINQ 514 (978)
Q Consensus 511 ~~~~ 514 (978)
+++.
T Consensus 158 ~~nr 161 (448)
T KOG0195|consen 158 SPNR 161 (448)
T ss_pred CCCc
Confidence 6653
No 68
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.61 E-value=4.4e-15 Score=125.44 Aligned_cols=89 Identities=44% Similarity=0.646 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy9384 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426 (978)
Q Consensus 347 l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~i 426 (978)
||+|+..|+++++++|++ .+.+++. |.||||+||..|+.+++++|++.|++++.++..|+||||+|+.+|+.++
T Consensus 1 L~~A~~~~~~~~~~~ll~--~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE--KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH--TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred CHHHHHcCCHHHHHHHHH--CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence 799999999999999999 6666665 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCcCC
Q psy9384 427 VKLLLQSGADVNCSD 441 (978)
Q Consensus 427 v~~Ll~~g~~~~~~~ 441 (978)
+++|+++|++++.+|
T Consensus 75 ~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 75 VKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHTTT-TTSS-
T ss_pred HHHHHHcCCCCCCcC
Confidence 999999999998764
No 69
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.60 E-value=5.2e-15 Score=125.00 Aligned_cols=89 Identities=49% Similarity=0.698 Sum_probs=82.4
Q ss_pred HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeee
Q psy9384 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461 (978)
Q Consensus 382 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~ 461 (978)
||+||+.|+.+++++|++.+.+++. |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.+|+.++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~-- 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI-- 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH--
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH--
Confidence 7999999999999999999988866 8899999999999999999999999999999999999999999999999
Q ss_pred eccchHHHHHHHHcCCCCcccC
Q psy9384 462 VLGPLCVVKLLLAAGAHVNAAD 483 (978)
Q Consensus 462 ~~~~~~vv~~Ll~~g~~~~~~~ 483 (978)
+++|+++|++++.+|
T Consensus 75 -------~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 75 -------VKLLLEHGADVNIRN 89 (89)
T ss_dssp -------HHHHHHTTT-TTSS-
T ss_pred -------HHHHHHcCCCCCCcC
Confidence 999999999998764
No 70
>KOG3676|consensus
Probab=99.59 E-value=2.8e-14 Score=155.83 Aligned_cols=200 Identities=23% Similarity=0.214 Sum_probs=146.6
Q ss_pred CHHHHHHHcCCHHHHHHHHhCC---------CCccCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCC-Cc----ccCC
Q psy9384 559 TPLLVAAFEGHRDVCEILLENE---------ADQDHIDKSGRTPLWAAASM---GHASCVALLLFWGAY-VD----TIDA 621 (978)
Q Consensus 559 t~L~~a~~~~~~~iv~~Ll~~g---------~~~~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~-~~----~~~~ 621 (978)
.++..+...+..+..+.|...+ -+.+.+...|.|.||.|.-+ ++.+++..|++.-.. +| ....
T Consensus 103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY 182 (782)
T KOG3676|consen 103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY 182 (782)
T ss_pred hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence 3455555555555555554433 34555566677888777653 445677777764321 11 1123
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCC---------CCccccCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy9384 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGS---------LDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692 (978)
Q Consensus 622 ~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 692 (978)
.|+|+||.|+.+.+.++|++|++.|+++..-..+.-..+ .+..-.-..|+.||-+|+..++.|++++|+++
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~ 262 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH 262 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence 478888888888888888888888876654222111100 11111234688999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCC--CcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHH
Q psy9384 693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN--VNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNI 764 (978)
Q Consensus 693 g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~ 764 (978)
|+|++..|..|+|.||+.+..-..+|..++++. |++ ...+|..|.|||..|+ +.|+.++.+.+++.
T Consensus 263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~-ga~~l~~v~N~qgLTPLtLAa-----klGk~emf~~ile~ 330 (782)
T KOG3676|consen 263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALEL-GANALEHVRNNQGLTPLTLAA-----KLGKKEMFQHILER 330 (782)
T ss_pred CCCCCccccCCChHHHHHHHHHHHHHHHHHHhc-CCCccccccccCCCChHHHHH-----HhhhHHHHHHHHHh
Confidence 999999999999999999999999999999997 999 8899999999999999 99999999999943
No 71
>KOG0195|consensus
Probab=99.58 E-value=4.5e-15 Score=140.12 Aligned_cols=133 Identities=33% Similarity=0.507 Sum_probs=119.1
Q ss_pred HHhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeecc
Q psy9384 386 AHQGFVDAVQILL-EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLG 464 (978)
Q Consensus 386 ~~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~ 464 (978)
|+.|+.=-|++.| +...|.|.-|..|.+|||+||+.|+..+++.|+.+|+.+|..+....||||+|+..||.++
T Consensus 8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi----- 82 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI----- 82 (448)
T ss_pred hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH-----
Confidence 4444443344333 4456788889999999999999999999999999999999999989999999999999999
Q ss_pred chHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384 465 PLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527 (978)
Q Consensus 465 ~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 527 (978)
|+.|++..+++|..++.|.||||+||..|...+.+-|+..|+-++..+..|.||+..|-
T Consensus 83 ----vqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak 141 (448)
T KOG0195|consen 83 ----VQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK 141 (448)
T ss_pred ----HHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999998774
No 72
>KOG3676|consensus
Probab=99.56 E-value=6.8e-14 Score=152.88 Aligned_cols=245 Identities=21% Similarity=0.178 Sum_probs=179.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCC---------CCCCcCCCCCCcHHHHHHhcCC---ceeeeeccchHHHHHHHHcCCC-
Q psy9384 412 WTPLRSASWGGHSAVVKLLLQSG---------ADVNCSDMGGRTALRAAAWGGH---LEVTIVLGPLCVVKLLLAAGAH- 478 (978)
Q Consensus 412 ~t~L~~A~~~g~~~iv~~Ll~~g---------~~~~~~~~~~~t~l~~A~~~~~---~~i~~~~~~~~vv~~Ll~~g~~- 478 (978)
+.++..|...+..+.+.-|+..+ .+++.+...|.|.||.|..+.+ -++ ++.|++.-..
T Consensus 102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~l---------a~~LL~~~p~l 172 (782)
T KOG3676|consen 102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNEL---------ARVLLEIFPKL 172 (782)
T ss_pred hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHH---------HHHHHHHhHHH
Confidence 35677777777777777776654 4677777889999999988533 344 7777764321
Q ss_pred Cc----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCC
Q psy9384 479 VN----AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554 (978)
Q Consensus 479 ~~----~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~ 554 (978)
+| .....|.||||.|+.+.+.++|++|++.|+|++.+.... ...+ ...+..- +..+..-.-
T Consensus 173 ind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~---FF~~----~dqk~~r--------k~T~Y~G~~ 237 (782)
T KOG3676|consen 173 INDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGA---FFCP----DDQKASR--------KSTNYTGYF 237 (782)
T ss_pred hhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcc---ccCc----ccccccc--------cccCCccee
Confidence 11 123468999999999999999999999999998764311 0000 0000000 222222223
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CcccCCCCCcHHHHHHH
Q psy9384 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY--VDTIDAEGRTVLSVAAA 632 (978)
Q Consensus 555 ~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~ 632 (978)
..|..||-.|++.++.+++++|+++|+|++..|..|+|.||..+..-..+|...+++.|++ ...++..|.|||..|++
T Consensus 238 YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak 317 (782)
T KOG3676|consen 238 YFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK 317 (782)
T ss_pred eeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred cCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCC--CchHHHHHHHc
Q psy9384 633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC--GWTPLHYAAIE 680 (978)
Q Consensus 633 ~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~--g~t~L~~A~~~ 680 (978)
-|+.++++.+++.........+.....-.+.+..|.. ..++|.+.+..
T Consensus 318 lGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg 367 (782)
T KOG3676|consen 318 LGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG 367 (782)
T ss_pred hhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence 9999999999998333333333333333555555554 34666666544
No 73
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.56 E-value=6.7e-14 Score=128.05 Aligned_cols=124 Identities=49% Similarity=0.738 Sum_probs=102.9
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHh
Q psy9384 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453 (978)
Q Consensus 374 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~ 453 (978)
.+..|.||||+|+..|+.+++++|++.|.+.+..+..|.+|+|+|+..++.+++++|++.|++++..+..+.+|+|+|+.
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~ 82 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR 82 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 35668888888888888888888888888777788888888888888888888888888887777777778888888888
Q ss_pred cCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9384 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSIL 506 (978)
Q Consensus 454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll 506 (978)
.++.++ +++|++.|.+.+..+..+.||++.|+..++.+++++|+
T Consensus 83 ~~~~~~---------~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 83 NGNLDV---------VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred cCcHHH---------HHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 888877 88888888777778888888888888888888888764
No 74
>KOG4214|consensus
Probab=99.53 E-value=5.1e-14 Score=108.77 Aligned_cols=104 Identities=35% Similarity=0.486 Sum_probs=93.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS 424 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~ 424 (978)
.-+.|+..+|.++.|+..+. .+.+++..- .|++|||+|+-+|+.+++++|+..|++++.+|..|-|||..|++.||.
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~--~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~ 80 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVN--EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR 80 (117)
T ss_pred hhHhhhhccCcHHHHHHHHH--ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence 34789999999999999999 777777444 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384 425 AVVKLLLQSGADVNCSDMGGRTALRAA 451 (978)
Q Consensus 425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A 451 (978)
++|++|++.|++-.....+|.+.+..+
T Consensus 81 ~cVklLL~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 81 DCVKLLLQNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred HHHHHHHHcCcccceeCCCchhHHhhc
Confidence 999999999999888888887665543
No 75
>PF05729 NACHT: NACHT domain
Probab=99.52 E-value=3.3e-14 Score=137.22 Aligned_cols=163 Identities=19% Similarity=0.266 Sum_probs=96.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHHhh
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTI 117 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~ 117 (978)
+++||+|+||+|||++++.++..+....... ....+.+|++-+........ +++..+|..+.+........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~~~~~~- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPP----SKFPYPFFFSLRDISDSNNS----RSLADLLFDQLPESIAPIEE- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCccc----ccceEEEEEeehhhhhcccc----chHHHHHHHhhccchhhhHH-
Confidence 5899999999999999999998776432111 11234444444344333333 44444444432221111100
Q ss_pred hcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCC
Q psy9384 118 VEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPP 197 (978)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 197 (978)
.+. ..+ ...+++++||||+|||....+......+..++.+++.. ..++
T Consensus 72 ---------------------~~~----~~~----~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~---~~~~ 119 (166)
T PF05729_consen 72 ---------------------LLQ----ELL----EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ---ALPP 119 (166)
T ss_pred ---------------------HHH----HHH----HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh---ccCC
Confidence 111 111 13578999999999998643221123355566666653 2456
Q ss_pred ceeeeeeeccccc-chhhcccCccccccccccchhhhhHHHHHHHHHhc
Q psy9384 198 WLFLFCTVRRQSK-SIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLA 245 (978)
Q Consensus 198 ~~~~~~~sr~~~~-~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~ 245 (978)
++++++++|+... ++...+.....+.+...+. .|+++|++..+.
T Consensus 120 ~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~f~ 164 (166)
T PF05729_consen 120 GVKLIITSRPRAFPDLRRRLKQAQILELEPFSE----EDIKQYLRKYFS 164 (166)
T ss_pred CCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH----HHHHHHHHHHhh
Confidence 8899999988654 3666666666678766554 788888776654
No 76
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.50 E-value=5e-13 Score=122.21 Aligned_cols=119 Identities=49% Similarity=0.738 Sum_probs=53.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCC
Q psy9384 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC 669 (978)
Q Consensus 590 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (978)
|.|||+.|+..++.+++++|++.+.+.+..+..|.+|++.|+..++.+++++|++.+ .+.+..+..
T Consensus 7 g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~--------------~~~~~~~~~ 72 (126)
T cd00204 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG--------------ADVNARDKD 72 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC--------------CCccccCCC
Confidence 344444444444444444444444443444444444444444444444444444444 233333344
Q ss_pred CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q psy9384 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722 (978)
Q Consensus 670 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~L 722 (978)
+.||+|.|+..++.+++++|+++|.+++..+..+.||+++|+..++.+++++|
T Consensus 73 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 73 GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence 44444444444444444444444444444444444444444444444444443
No 77
>KOG4214|consensus
Probab=99.42 E-value=4.7e-13 Score=103.49 Aligned_cols=103 Identities=31% Similarity=0.469 Sum_probs=93.7
Q ss_pred cHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459 (978)
Q Consensus 380 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i 459 (978)
.-+.+++++|.++-|+.....|-++|..- .|++|||||+-+|+.+++.+|+..|++++.+|+.|.|||..|+..||.++
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c 82 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC 82 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence 34788999999999999999998887664 89999999999999999999999999999999999999999999999999
Q ss_pred eeeccchHHHHHHHHcCCCCcccCCCCCcHHHH
Q psy9384 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492 (978)
Q Consensus 460 ~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~ 492 (978)
|++|++.|++-.....+|.+.+..
T Consensus 83 ---------VklLL~~GAdrt~~~PdG~~~~ea 106 (117)
T KOG4214|consen 83 ---------VKLLLQNGADRTIHAPDGTALIEA 106 (117)
T ss_pred ---------HHHHHHcCcccceeCCCchhHHhh
Confidence 999999999988777777765543
No 78
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.29 E-value=6.2e-12 Score=93.64 Aligned_cols=53 Identities=34% Similarity=0.509 Sum_probs=45.9
Q ss_pred CchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHH
Q psy9384 884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936 (978)
Q Consensus 884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~ 936 (978)
.||||.|++.|+.+++++|+++|+|+|.+|.+|.||||+|+.+|+.+++++|+
T Consensus 2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 89999999999999999999999999999999999999999999999999986
No 79
>KOG1710|consensus
Probab=99.29 E-value=1.7e-11 Score=116.36 Aligned_cols=114 Identities=32% Similarity=0.427 Sum_probs=106.9
Q ss_pred chHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcC
Q psy9384 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHT-DCEGWTPLRSASWGG 422 (978)
Q Consensus 344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g 422 (978)
..+|..+...|+.+....|++ .-..++.+|.+|.|+|..|+..|+.++|++|++.|+|+|.. +..+.||||+|+.+|
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs--~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG 90 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLS--TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG 90 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHH--HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence 468999999999999999998 55568999999999999999999999999999999999865 457889999999999
Q ss_pred CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384 423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459 (978)
Q Consensus 423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i 459 (978)
+.++.++|++.|+..+..+.-|.|+-..|+.-|+.++
T Consensus 91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~C 127 (396)
T KOG1710|consen 91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHEC 127 (396)
T ss_pred CchHHHHHHhccCccccccchhhhHHHHHHHhcchHH
Confidence 9999999999999999999999999999999999998
No 80
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.28 E-value=4.4e-11 Score=123.02 Aligned_cols=130 Identities=40% Similarity=0.527 Sum_probs=116.0
Q ss_pred ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC---CCCcCCC
Q psy9384 371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH-----SAVVKLLLQSGA---DVNCSDM 442 (978)
Q Consensus 371 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~-----~~iv~~Ll~~g~---~~~~~~~ 442 (978)
....+..+.++++.|+..+..+++++++..|++++.++..|.||||+|+..++ .+++++|++.|+ ..+..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~ 145 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence 34556678899999999999999999999999999999999999999999999 899999999998 5566688
Q ss_pred CCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy9384 443 GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509 (978)
Q Consensus 443 ~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 509 (978)
.|.||+|+|+..|+.++ +++|++.|++++..+..|.|+++.|+..++.++++.+++.+
T Consensus 146 ~g~tpl~~A~~~~~~~~---------~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 146 DGNTPLHWAALNGDADI---------VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCCchhHHHHHcCchHH---------HHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 99999999999999988 99999999999988899999999999999999999999876
No 81
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.27 E-value=1e-11 Score=92.49 Aligned_cols=54 Identities=46% Similarity=0.685 Sum_probs=44.8
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9384 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431 (978)
Q Consensus 378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll 431 (978)
|.||||+||+.|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 689999999999999999999999999999999999999999999999999986
No 82
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.25 E-value=5e-11 Score=122.62 Aligned_cols=127 Identities=39% Similarity=0.537 Sum_probs=119.1
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCC-----HHHHHHHHHCCC---CCCCCCCC
Q psy9384 339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGF-----VDAVQILLEAGA---NINHTDCE 410 (978)
Q Consensus 339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~~~~ 410 (978)
.+..+.++++.++..+....+++++. .+.+++..+..|.||||+|+..|+ .+++++|++.|+ ..+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~ 146 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDKIVKLLLA--SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED 146 (235)
T ss_pred CCccccCHHHHHHHcCcHHHHHHHHH--cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence 34556789999999999999999999 899999999999999999999999 999999999999 56677999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcC
Q psy9384 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476 (978)
Q Consensus 411 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g 476 (978)
|.||||+|+..|+.+++++|++.|++++..+..|.|++++|+..++.++ ++.+++.+
T Consensus 147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~---------~~~l~~~~ 203 (235)
T COG0666 147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIEL---------VKLLLDKG 203 (235)
T ss_pred CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHH---------HHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999 99998876
No 83
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.24 E-value=7.7e-12 Score=93.40 Aligned_cols=55 Identities=35% Similarity=0.460 Sum_probs=32.5
Q ss_pred hhhcc-CCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHH
Q psy9384 864 TDEHF-SRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVA 923 (978)
Q Consensus 864 L~~~g-~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A 923 (978)
|+++| ++++..+ ..| .||||+||.+|+.++|++|++.|+|++.+|..|+||+++|
T Consensus 1 LL~~~~~~~n~~d-~~G----~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQD-KYG----NTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT----TTS------HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcC-CCC----CcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 56677 8888888 888 9999999999999999999999999999999999999987
No 84
>KOG0515|consensus
Probab=99.16 E-value=7.5e-11 Score=121.27 Aligned_cols=91 Identities=34% Similarity=0.526 Sum_probs=84.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384 346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA 425 (978)
Q Consensus 346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~ 425 (978)
.|..|+..|.+++|+.++. .-.|....+..|.|+||.|+..||.+||++|++.|+++|..|.+||||||+|+..++..
T Consensus 553 LLLDaaLeGEldlVq~~i~--ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~ 630 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIY--EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP 630 (752)
T ss_pred HHHhhhhcchHHHHHHHHH--hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence 4567889999999999998 66778888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCC
Q psy9384 426 VVKLLLQSGADVN 438 (978)
Q Consensus 426 iv~~Ll~~g~~~~ 438 (978)
+++.|+++|+-+-
T Consensus 631 ~ckqLVe~Gaavf 643 (752)
T KOG0515|consen 631 MCKQLVESGAAVF 643 (752)
T ss_pred HHHHHHhccceEE
Confidence 9999999997654
No 85
>KOG0515|consensus
Probab=99.16 E-value=1.1e-10 Score=119.96 Aligned_cols=125 Identities=29% Similarity=0.295 Sum_probs=106.9
Q ss_pred HHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy9384 627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706 (978)
Q Consensus 627 L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 706 (978)
|.-|+..|.+++|+-.+..- .|...-+..|.|+||.|+..||++||++|++.|+++|..|.+|+||
T Consensus 554 LLDaaLeGEldlVq~~i~ev--------------~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTP 619 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEV--------------TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTP 619 (752)
T ss_pred HHhhhhcchHHHHHHHHHhh--------------cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCch
Confidence 45577889999999998776 5667778899999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHhhcCCCCcC-CCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384 707 LILAAQDGHYHLVEMFLEQYEANVNQ-KSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL 769 (978)
Q Consensus 707 L~~A~~~~~~~iv~~Ll~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~ 769 (978)
||.|+..++..+++.|++. |+.+-+ .-.++.|+...+-+. ..|..++.+||...-.+.|
T Consensus 620 LHCAASCNnv~~ckqLVe~-GaavfAsTlSDmeTa~eKCee~---eeGY~~CsqyL~~vqesmG 679 (752)
T KOG0515|consen 620 LHCAASCNNVPMCKQLVES-GAAVFASTLSDMETAAEKCEEM---EEGYDQCSQYLYGVQESMG 679 (752)
T ss_pred hhhhhhcCchHHHHHHHhc-cceEEeeecccccchhhhcchh---hhhHHHHHHHHHHHHHhhc
Confidence 9999999999999999998 666544 346788888877655 7899999999985433333
No 86
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.15 E-value=4e-11 Score=89.52 Aligned_cols=50 Identities=42% Similarity=0.577 Sum_probs=18.4
Q ss_pred CCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy9384 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSA 418 (978)
Q Consensus 369 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A 418 (978)
.+++..|..|.||||+||..|+.++|++|++.|++++.+|..|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 44455555555555555555555555555555555555555555555544
No 87
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.13 E-value=1.7e-10 Score=134.65 Aligned_cols=86 Identities=34% Similarity=0.426 Sum_probs=52.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384 346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA 425 (978)
Q Consensus 346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~ 425 (978)
.|+.|+..|+.+.++.|++ .+.+++..|..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus 85 ~L~~aa~~G~~~~vk~LL~--~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~ 162 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLT--GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE 162 (664)
T ss_pred HHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 3555566666666666665 55555555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhC
Q psy9384 426 VVKLLLQS 433 (978)
Q Consensus 426 iv~~Ll~~ 433 (978)
++++|+++
T Consensus 163 iv~~Ll~~ 170 (664)
T PTZ00322 163 VVQLLSRH 170 (664)
T ss_pred HHHHHHhC
Confidence 66666655
No 88
>KOG1710|consensus
Probab=99.13 E-value=3.8e-10 Score=107.38 Aligned_cols=121 Identities=34% Similarity=0.504 Sum_probs=106.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccc-cCCC
Q psy9384 591 RTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH-RDNC 669 (978)
Q Consensus 591 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~~~ 669 (978)
..||.-++..++.+-...|++.--++|..|..|.++|..|+..|+.++++.|++.| .|+|. ++..
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~g--------------aDvN~~qhg~ 78 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELG--------------ADVNDKQHGT 78 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhC--------------CCcCcccccc
Confidence 47888888899998888888876678899999999999999999999999999999 55554 4567
Q ss_pred CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q psy9384 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725 (978)
Q Consensus 670 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ 725 (978)
+.||||+|+.+|+.++.++|++.|+.+...+.-|+|+-.+|+.-|+.+.|..+-.+
T Consensus 79 ~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 79 LYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH 134 (396)
T ss_pred cccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999888776543
No 89
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.12 E-value=2.9e-10 Score=132.69 Aligned_cols=84 Identities=39% Similarity=0.481 Sum_probs=79.3
Q ss_pred cHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459 (978)
Q Consensus 380 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i 459 (978)
..|+.|+..|+.++++.|++.|+++|..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i 163 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV 163 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeec
Q psy9384 460 TIVL 463 (978)
Q Consensus 460 ~~~~ 463 (978)
+..+
T Consensus 164 v~~L 167 (664)
T PTZ00322 164 VQLL 167 (664)
T ss_pred HHHH
Confidence 7766
No 90
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.93 E-value=8.8e-09 Score=109.23 Aligned_cols=207 Identities=18% Similarity=0.220 Sum_probs=118.3
Q ss_pred cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHH
Q psy9384 15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQN 94 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~ 94 (978)
|+--.+++.+||... ..+.+++.|+|.+|+|||+||..++..... +. .-..+.++... ...+...
T Consensus 1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~------~~-~f~~v~wv~~~----~~~~~~~ 65 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRI------KN-RFDGVIWVSLS----KNPSLEQ 65 (287)
T ss_dssp -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHH------CC-CCTEEEEEEEE----S-SCCHH
T ss_pred CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeeccccccc------cc-ccccccccccc----ccccccc
Confidence 344467788899873 247899999999999999999999855110 00 11233333333 2223388
Q ss_pred HHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCC
Q psy9384 95 FIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKK 174 (978)
Q Consensus 95 ~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~ 174 (978)
+++.|+.+|....+.. .. ....+...+.+.+.+.. .++.+|+|.+++...
T Consensus 66 ~~~~i~~~l~~~~~~~--------~~-------------~~~~~~~~~~l~~~L~~-----~~~LlVlDdv~~~~~---- 115 (287)
T PF00931_consen 66 LLEQILRQLGEPDSSI--------SD-------------PKDIEELQDQLRELLKD-----KRCLLVLDDVWDEED---- 115 (287)
T ss_dssp HHHHHHHHHTCC-STS--------SC-------------CSSHHHHHHHHHHHHCC-----TSEEEEEEEE-SHHH----
T ss_pred cccccccccccccccc--------cc-------------ccccccccccchhhhcc-----ccceeeeeeeccccc----
Confidence 8999999998874432 00 00012233444444433 389999999998651
Q ss_pred cCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccC-ccccccccccchhhhhHHHHHHHHHhcCchHHHhh
Q psy9384 175 IYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLG-FHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVH 253 (978)
Q Consensus 175 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~-~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~ 253 (978)
+..+...+. ..+.+.++|+|||... +...... ...+++...+. +|-..++........ ..
T Consensus 116 ------~~~l~~~~~----~~~~~~kilvTTR~~~--v~~~~~~~~~~~~l~~L~~----~ea~~L~~~~~~~~~---~~ 176 (287)
T PF00931_consen 116 ------LEELREPLP----SFSSGSKILVTTRDRS--VAGSLGGTDKVIELEPLSE----EEALELFKKRAGRKE---SE 176 (287)
T ss_dssp ------H-------H----CHHSS-EEEEEESCGG--GGTTHHSCEEEEECSS--H----HHHHHHHHHHHTSHS-----
T ss_pred ------ccccccccc----cccccccccccccccc--ccccccccccccccccccc----ccccccccccccccc---cc
Confidence 111222222 1223568999998753 4443332 45577765443 555555555544222 11
Q ss_pred cCcChHHHHHHHHhhchhhHHHHHHHHhhhhc
Q psy9384 254 MNRDTAEMLNQLHIKSNGCFLYLERVLDGISN 285 (978)
Q Consensus 254 ~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~ 285 (978)
......++..+|+++.+|.+|.++++...+..
T Consensus 177 ~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~ 208 (287)
T PF00931_consen 177 SPEDLEDLAKEIVEKCGGLPLALKLIASYLRS 208 (287)
T ss_dssp --TTSCTHHHHHHHHTTT-HHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 22334567889999999999999999998853
No 91
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.87 E-value=2.2e-09 Score=105.46 Aligned_cols=149 Identities=18% Similarity=0.296 Sum_probs=64.3
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCC-c
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLA-T 89 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~-~ 89 (978)
.|+||+..++++.+.+... ..+.++.++|+|.||+|||+|...+.+.+.. ....+.+..|...... .
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 68 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAE---------RGGYVISINCDDSERNPY 68 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHH---------HT--EEEEEEETTTS-HH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh---------cCCEEEEEEEeccccchh
Confidence 5999999999999999632 4557789999999999999999999866432 1222555555544211 1
Q ss_pred cCHHHHHHHHHHHHhcCCCc-----hhHHHHhhhcchh---------hHh-hcchhhhhhCHHHHHHHhhhhhhhcCCCC
Q psy9384 90 FSVQNFIQSLVEQFSSSESP-----FSEAFSTIVEDES---------IKA-LLKSDQLLQDSDEVFKKALILPLAQIKHP 154 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~-----~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 154 (978)
.+...+++.++.|+....+. ....+...+.... ... ..............+...+...+......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 148 (185)
T PF13191_consen 69 SPFRSALRQLIDQLLDQSQATTRSPLREKLAASLDDDAADLLVLLPDLDRLEAASALDPDSLEDRLEELLREILRELAAR 148 (185)
T ss_dssp HHHHHHHHHHS------------------------------------------SS---HHHHH----HHHHHHHTTS-SE
T ss_pred hHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccCCCHHHHHhHHHHHHHHHHHHHHhC
Confidence 11244455555554432221 0111111111000 000 00000011111223335666666555554
Q ss_pred CCcEEEEEecccccccc
Q psy9384 155 KTSYFILVDSIDETHVT 171 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~ 171 (978)
..++++|||.+|+++..
T Consensus 149 ~~~~vlviDd~d~~~~~ 165 (185)
T PF13191_consen 149 RKPLVLVIDDLDWADPA 165 (185)
T ss_dssp ---EEEEEETTTHHHTT
T ss_pred CCeEEEEEeCCCCCCcH
Confidence 45699999999999843
No 92
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.82 E-value=2e-08 Score=103.12 Aligned_cols=224 Identities=21% Similarity=0.232 Sum_probs=112.9
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS 91 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~ 91 (978)
|+||+--++++.+|+.+. ..+..+|+|+.|+|||+|+..++..+... +..+.|+.+. .. .
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~---------~~~~~y~~~~-~~----~ 60 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEK---------GYKVVYIDFL-EE----S 60 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT-----------EECCCHHCCT-TB----S
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhc---------CCcEEEEecc-cc----h
Confidence 899999999999999974 46889999999999999999999776431 2233333221 11 2
Q ss_pred HHHHHHHHHH--HHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 92 VQNFIQSLVE--QFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 92 ~~~~l~sl~~--QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
....+..++. ++.. .+.+.+.............. .........+.+++.. +.. ...+++||||.+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-l~~---~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 61 NESSLRSFIEETSLAD---ELSEALGISIPSITLEKISK--DLSEDSFSALERLLEK-LKK---KGKKVIIVIDEFQYLA 131 (234)
T ss_dssp HHHHHHHHHHHHHHHC---HCHHHHHHHCCTSTTEEEEC--TS-GG-G--HHHHHHH-HHH---CHCCEEEEEETGGGGG
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHhhhcccccchhhhh--cchhhHHHHHHHHHHH-HHh---cCCcEEEEEecHHHHh
Confidence 2222333321 1111 12222222111111100000 0111122333333332 222 2345999999999998
Q ss_pred -ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc--c----hhhcccCccccccccccchhhhhHHHHHHHH
Q psy9384 170 -VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK--S----IKKMFLGFHKLSLDDLRKSHVIRDMQQYILL 242 (978)
Q Consensus 170 -~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~--~----i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~ 242 (978)
.. .....++..+..++..... ..++.++++++.... . -...+.....+.++..+ .++...|+..
T Consensus 132 ~~~---~~~~~~~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~e~~~~~~~ 202 (234)
T PF01637_consen 132 IAS---EEDKDFLKSLRSLLDSLLS--QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLS----KEEAREFLKE 202 (234)
T ss_dssp BCT---TTTHHHHHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE--------HHHHHHHHHH
T ss_pred hcc---cchHHHHHHHHHHHhhccc--cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCC----HHHHHHHHHH
Confidence 21 1245566777777776322 234555555554321 1 11233344456665544 4788888888
Q ss_pred HhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHH
Q psy9384 243 RLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLER 278 (978)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~ 278 (978)
.+.+.. .. ...++.++++..-.+|.+.|+..
T Consensus 203 ~~~~~~---~~--~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 203 LFKELI---KL--PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHCC-----------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHhh---cc--cCCHHHHHHHHHHhCCCHHHHhc
Confidence 766541 11 22455668999999999999864
No 93
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.58 E-value=7.1e-07 Score=98.15 Aligned_cols=229 Identities=14% Similarity=0.141 Sum_probs=121.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
+.|.||+--++++.+|+...- ..+.++.+.|+|+||+|||+++..+.+++...... ......+.|+-|. ..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~---~~~~~~~v~in~~----~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAED---RDVRVVTVYVNCQ----IL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhc---cCCceEEEEEECC----CC
Confidence 579999988888777776421 11244678999999999999999999776421100 0011234444443 23
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.+...+++.|+.||.......+. .. .+..+.+..++. .+. ...+++++|||-+|...
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~-----------~~--------~~~~~~~~~l~~-~l~---~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPT-----------TG--------LSTSEVFRRLYK-ELN---ERGDSLIIVLDEIDYLV 142 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCC-----------CC--------CCHHHHHHHHHH-HHH---hcCCeEEEEECchhhhc
Confidence 46778999999999631000000 00 001111222211 121 23557899999999985
Q ss_pred ccCCCcCCCcchhhHHHHHHhc-cCCCC-Cceeeeeeeccccc--chhhc-ccCc--cccccccccchhhhhHHHHHHHH
Q psy9384 170 VTNKKIYSDKATCSIADLLARN-HHLFP-PWLFLFCTVRRQSK--SIKKM-FLGF--HKLSLDDLRKSHVIRDMQQYILL 242 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~-~~~~~-~~~~~~~~sr~~~~--~i~~~-~~~~--~~i~l~~~~~~~~~~Di~~yi~~ 242 (978)
.. ..+ .+..+++-. ....+ .++.+|++++.... .+... .+.+ ..+.+... ..+++..++..
T Consensus 143 ~~-----~~~---~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~----~~~e~~~il~~ 210 (365)
T TIGR02928 143 GD-----DDD---LLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPY----DAEELRDILEN 210 (365)
T ss_pred cC-----CcH---HHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCC----CHHHHHHHHHH
Confidence 21 122 233333220 11223 45677777755321 12111 1122 23555443 34789999998
Q ss_pred HhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 243 RLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
++..... .....+..-+.+..++.++.|....+--.|+..
T Consensus 211 r~~~~~~-~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 211 RAEKAFY-DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred HHHhhcc-CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8862110 011122222355566777789888776665544
No 94
>KOG0782|consensus
Probab=98.55 E-value=3.6e-07 Score=95.31 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=103.7
Q ss_pred HHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCH
Q psy9384 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN--INHTDCEGWTPLRSASWGGHS 424 (978)
Q Consensus 347 l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~ 424 (978)
+..|+..+++--+..... .|.++-.++.+..+.||+|+..|+-++|+|+|++|.. .+..|..|.|+||-|+..++.
T Consensus 870 il~av~~~D~~klqE~h~--~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r 947 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHL--NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR 947 (1004)
T ss_pred HHHHHHhccHHHHHHHHh--cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence 667777777766666665 7888888899999999999999999999999999975 566788999999999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHH
Q psy9384 425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474 (978)
Q Consensus 425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~ 474 (978)
.++++|++.|+.+-..|..|.||-..|-..|..++ ..||-.
T Consensus 948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dl---------aayle~ 988 (1004)
T KOG0782|consen 948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDL---------AAYLES 988 (1004)
T ss_pred HHHHHHHhcchhheecccCCCChHHHHHhcCCchH---------HHHHhh
Confidence 99999999999999999999999999999999998 777754
No 95
>PF13606 Ank_3: Ankyrin repeat
Probab=98.53 E-value=1.1e-07 Score=59.66 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=21.2
Q ss_pred CchHHHHHHhCCHHHHHHHHHcCCCCC
Q psy9384 884 GEKISIAAQEGHEDCVRLLLHYGADPK 910 (978)
Q Consensus 884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~ 910 (978)
.||||+||..|+.++|++|+++|+|+|
T Consensus 3 ~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 3 NTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 777778888888888888887777776
No 96
>PF13606 Ank_3: Ankyrin repeat
Probab=98.53 E-value=1.4e-07 Score=59.28 Aligned_cols=28 Identities=46% Similarity=0.762 Sum_probs=15.6
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHCCCCCC
Q psy9384 378 GQTALNVAAHQGFVDAVQILLEAGANIN 405 (978)
Q Consensus 378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 405 (978)
|+||||+||+.|+.++|++|+++|+++|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 4555555555555555555555555544
No 97
>KOG0783|consensus
Probab=98.51 E-value=7.7e-08 Score=105.01 Aligned_cols=105 Identities=25% Similarity=0.290 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHh
Q psy9384 354 NNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC-EGWTPLRSASWGGHSAVVKLLLQ 432 (978)
Q Consensus 354 ~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~A~~~g~~~iv~~Ll~ 432 (978)
+..+-++-+++...+.-.++.|..|+|+||.|+..|...+++||+++|++++.+|. .|+||||-|+.+|++|++-+|++
T Consensus 28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~ 107 (1267)
T KOG0783|consen 28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS 107 (1267)
T ss_pred CChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence 34434566665433444889999999999999999999999999999999998885 69999999999999999999999
Q ss_pred CCCCCCcCCCCCCcHHHHHHhcCCce
Q psy9384 433 SGADVNCSDMGGRTALRAAAWGGHLE 458 (978)
Q Consensus 433 ~g~~~~~~~~~~~t~l~~A~~~~~~~ 458 (978)
+|+.....|+.|.+||...++--...
T Consensus 108 ~g~SL~i~Dkeglsplq~~~r~~~~~ 133 (1267)
T KOG0783|consen 108 KGRSLRIKDKEGLSPLQFLSRVLSST 133 (1267)
T ss_pred cCCceEEecccCCCHHHHHhhccccc
Confidence 99999999999999999998744333
No 98
>KOG0506|consensus
Probab=98.48 E-value=1.6e-07 Score=96.22 Aligned_cols=94 Identities=32% Similarity=0.403 Sum_probs=79.4
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHH
Q psy9384 339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRS 417 (978)
Q Consensus 339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~ 417 (978)
++..+...+++|+..|++..++.+.- .+.|++..|.+.+|+||.||..|+++++++|++. +++++.+|..|+|||.-
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l--~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd 579 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFAL--QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD 579 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHH--hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence 34455667888999999998888877 7888888898899999999999999999998874 68888889999999999
Q ss_pred HHHcCCHHHHHHHHhCC
Q psy9384 418 ASWGGHSAVVKLLLQSG 434 (978)
Q Consensus 418 A~~~g~~~iv~~Ll~~g 434 (978)
|-..+|.+++++|-+.-
T Consensus 580 A~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 580 AKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred hHhcCcHHHHHHHHHHh
Confidence 99999999999888764
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.48 E-value=2e-06 Score=107.48 Aligned_cols=221 Identities=17% Similarity=0.165 Sum_probs=127.6
Q ss_pred CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384 6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY 85 (978)
Q Consensus 6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~ 85 (978)
|......+.|.-+++.+.+. ...++.+|+|++|+||||+++..... .+ .++++..+.
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---------~~~~~~~v~apaG~GKTtl~~~~~~~------------~~-~~~w~~l~~- 66 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---------NNYRLVLVTSPAGYGKTTLISQWAAG------------KN-NLGWYSLDE- 66 (903)
T ss_pred CCCccccCcchHHHHHHhcc---------cCCCeEEEECCCCCCHHHHHHHHHHh------------CC-CeEEEecCc-
Confidence 33444555555555544322 25689999999999999999998732 12 466665543
Q ss_pred CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384 86 DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI 165 (978)
Q Consensus 86 ~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL 165 (978)
...++..+++.|+..|....+.............. ..+....+..++. .+. ....++++|||-+
T Consensus 67 --~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~l~---~~~~~~~lvlDD~ 130 (903)
T PRK04841 67 --SDNQPERFASYLIAALQQATNGHCSKSEALAQKRQ----------YASLSSLFAQLFI-ELA---DWHQPLYLVIDDY 130 (903)
T ss_pred --ccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCC----------cCCHHHHHHHHHH-HHh---cCCCCEEEEEeCc
Confidence 33567778888888886544432221111111100 0111122222222 222 2356799999999
Q ss_pred ccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccc-hhhcccCccccccccccchhhhhHHHHHHHHHh
Q psy9384 166 DETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKS-IKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRL 244 (978)
Q Consensus 166 DE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~-i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l 244 (978)
+-++.. .+.+.+..++. ..|+++++|++||..++- +..........+++.-.-.-+.+++..|+..++
T Consensus 131 h~~~~~-------~~~~~l~~l~~----~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 131 HLITNP-------EIHEAMRFFLR----HQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CcCCCh-------HHHHHHHHHHH----hCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 998732 22335555555 457788999998875431 111110111122321111224578888877655
Q ss_pred cCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhc
Q psy9384 245 ASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISN 285 (978)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~ 285 (978)
.. ....+.++.|.+.++|.++.+++....+..
T Consensus 200 ~~---------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 200 SS---------PIEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CC---------CCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 42 234566788999999999999998887754
No 100
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.45 E-value=2.9e-06 Score=94.36 Aligned_cols=186 Identities=14% Similarity=0.137 Sum_probs=100.8
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
+.|.||+--++++..++...- ..+..+.+.|+|+||+|||+++..+.+++... ...+.+.|.+.. ..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~---------~~~~~~v~in~~--~~ 96 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI---------AVKVVYVYINCQ--ID 96 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh---------cCCcEEEEEECC--cC
Confidence 578899887777666654310 11234557899999999999999999765321 112333443322 23
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.++..++..++.||....++.. . .+. ..+.+.+.+.+.. ...+++||||-+|...
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~------------~---------~~~-~~~~~~~~~~l~~---~~~~~viviDE~d~l~ 151 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSS------------G---------LSF-DELFDKIAEYLDE---RDRVLIVALDDINYLF 151 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCC------------C---------CCH-HHHHHHHHHHHHh---cCCEEEEEECCHhHhh
Confidence 3677889999999875211100 0 001 1111222222222 3456899999999986
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc-c-----hhhcccCccccccccccchhhhhHHHHHHHHH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK-S-----IKKMFLGFHKLSLDDLRKSHVIRDMQQYILLR 243 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~-~-----i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~ 243 (978)
... ..+.+..+.++.... ...++.+|+++++... . +...+ ....+.+..++ .+++..++..+
T Consensus 152 ~~~----~~~~l~~l~~~~~~~---~~~~v~vI~i~~~~~~~~~l~~~~~s~~-~~~~i~f~py~----~~e~~~il~~r 219 (394)
T PRK00411 152 EKE----GNDVLYSLLRAHEEY---PGARIGVIGISSDLTFLYILDPRVKSVF-RPEEIYFPPYT----ADEIFDILKDR 219 (394)
T ss_pred ccC----CchHHHHHHHhhhcc---CCCeEEEEEEECCcchhhhcCHHHHhcC-CcceeecCCCC----HHHHHHHHHHH
Confidence 211 222333333333221 1125667777765421 1 11112 12345554444 37888888888
Q ss_pred hc
Q psy9384 244 LA 245 (978)
Q Consensus 244 l~ 245 (978)
+.
T Consensus 220 ~~ 221 (394)
T PRK00411 220 VE 221 (394)
T ss_pred HH
Confidence 75
No 101
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.40 E-value=4.3e-07 Score=59.12 Aligned_cols=31 Identities=45% Similarity=0.629 Sum_probs=27.7
Q ss_pred CchHHHHHHhCCHHHHHHHHHcCCCCCCCcc
Q psy9384 884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDH 914 (978)
Q Consensus 884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~ 914 (978)
.||||+|+..|+.++|++|+++|++++.+|+
T Consensus 3 ~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 3 NTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp BBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred ccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 8999999999999999999999999988763
No 102
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=2.2e-06 Score=78.41 Aligned_cols=125 Identities=20% Similarity=0.273 Sum_probs=74.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS 115 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~ 115 (978)
+++.+.|+|+||+|||+++..+.+.+.... .......+.|+.+.... ++..+.+.++.++....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~------ 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEA----EIKNHPDVIYVNCPSSR----TPRDFAQEILEALGLPLKS------ 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHH----HHCCCEEEEEEEHHHHS----SHHHHHHHHHHHHT-SSSS------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhh----hccCCCcEEEEEeCCCC----CHHHHHHHHHHHhCccccc------
Confidence 557899999999999999999996542100 00003344455554332 8899999999999876544
Q ss_pred hhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCC
Q psy9384 116 TIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLF 195 (978)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 195 (978)
......+.+.+...+.. ....+||||..|.+. . .++++.|..+..
T Consensus 69 ------------------~~~~~~l~~~~~~~l~~----~~~~~lviDe~~~l~-~------~~~l~~l~~l~~------ 113 (131)
T PF13401_consen 69 ------------------RQTSDELRSLLIDALDR----RRVVLLVIDEADHLF-S------DEFLEFLRSLLN------ 113 (131)
T ss_dssp ------------------TS-HHHHHHHHHHHHHH----CTEEEEEEETTHHHH-T------HHHHHHHHHHTC------
T ss_pred ------------------cCCHHHHHHHHHHHHHh----cCCeEEEEeChHhcC-C------HHHHHHHHHHHh------
Confidence 00112333444444444 334899999999983 1 223444444333
Q ss_pred CCceeeeeeecccc
Q psy9384 196 PPWLFLFCTVRRQS 209 (978)
Q Consensus 196 ~~~~~~~~~sr~~~ 209 (978)
..++.+++++.|..
T Consensus 114 ~~~~~vvl~G~~~l 127 (131)
T PF13401_consen 114 ESNIKVVLVGTPEL 127 (131)
T ss_dssp SCBEEEEEEESSTT
T ss_pred CCCCeEEEEEChhh
Confidence 45788999998853
No 103
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.38 E-value=4.3e-06 Score=94.65 Aligned_cols=219 Identities=15% Similarity=0.187 Sum_probs=112.4
Q ss_pred CcccccccchHHH----HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384 10 KKFFCREWAFVKL----VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY 85 (978)
Q Consensus 10 ~~f~~r~w~~~~~----~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~ 85 (978)
+...||+-=++++ ..++.+. +.+++|+|+|.||+|||+++..|++.|...... . .-..+.|+|.+-
T Consensus 755 D~LPhREeEIeeLasfL~paIkgs-----gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeq--k--~lp~f~vVYINC- 824 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQS-----GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQ--K--LLPSFNVFEING- 824 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcC-----CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhh--c--cCCCceEEEEeC-
Confidence 4567886655554 4555532 355789999999999999999999877532111 0 111233444331
Q ss_pred CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384 86 DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI 165 (978)
Q Consensus 86 ~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL 165 (978)
..-.++..+++.|..||....|.- . -+..+.+.+++..... ......+||||-+
T Consensus 825 -m~Lstp~sIYqvI~qqL~g~~P~~--------------G--------lsS~evLerLF~~L~k---~~r~v~IIILDEI 878 (1164)
T PTZ00112 825 -MNVVHPNAAYQVLYKQLFNKKPPN--------------A--------LNSFKILDRLFNQNKK---DNRNVSILIIDEI 878 (1164)
T ss_pred -CccCCHHHHHHHHHHHHcCCCCCc--------------c--------ccHHHHHHHHHhhhhc---ccccceEEEeehH
Confidence 223577888999999996543320 0 0111233333332111 1233468999999
Q ss_pred ccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc------cchhhcccCccccccccccchhhhhHHHHH
Q psy9384 166 DETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS------KSIKKMFLGFHKLSLDDLRKSHVIRDMQQY 239 (978)
Q Consensus 166 DE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~------~~i~~~~~~~~~i~l~~~~~~~~~~Di~~y 239 (978)
|..... ..+ .|..|++... .....+.+|.++.... +.++..+ ....+....+. .+++..-
T Consensus 879 D~L~kK-----~QD---VLYnLFR~~~-~s~SKLiLIGISNdlDLperLdPRLRSRL-g~eeIvF~PYT----aEQL~dI 944 (1164)
T PTZ00112 879 DYLITK-----TQK---VLFTLFDWPT-KINSKLVLIAISNTMDLPERLIPRCRSRL-AFGRLVFSPYK----GDEIEKI 944 (1164)
T ss_pred hhhCcc-----HHH---HHHHHHHHhh-ccCCeEEEEEecCchhcchhhhhhhhhcc-ccccccCCCCC----HHHHHHH
Confidence 988632 112 3444444221 2233455555553211 1122222 12234444433 4778888
Q ss_pred HHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 240 ILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
+..|+.... ....+..-+++.+++....|- |+.+++.|+
T Consensus 945 Lk~RAe~A~---gVLdDdAIELIArkVAq~SGD---ARKALDILR 983 (1164)
T PTZ00112 945 IKERLENCK---EIIDHTAIQLCARKVANVSGD---IRKALQICR 983 (1164)
T ss_pred HHHHHHhCC---CCCCHHHHHHHHHhhhhcCCH---HHHHHHHHH
Confidence 888877431 111122222333444466788 444455554
No 104
>KOG0783|consensus
Probab=98.38 E-value=1.7e-07 Score=102.34 Aligned_cols=85 Identities=18% Similarity=0.084 Sum_probs=73.5
Q ss_pred CCcccccccccccccccccc-----hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcc
Q psy9384 840 GHLIHAVDLSQRRQTSSSSA-----VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDH 914 (978)
Q Consensus 840 g~~~~~~~~~~~tpl~~a~~-----~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~ 914 (978)
+--.|++|..|+|+||+++. ++++|+.+|++++..|...| .||||.|..+|+.|++.+||.+|+....+|+
T Consensus 42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG----~taLHRaiyyG~idca~lLL~~g~SL~i~Dk 117 (1267)
T KOG0783|consen 42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESG----YTALHRAIYYGNIDCASLLLSKGRSLRIKDK 117 (1267)
T ss_pred hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccccc----chHhhHhhhhchHHHHHHHHhcCCceEEecc
Confidence 44467777888888887777 78888888888888887888 9999999999999999999999999999999
Q ss_pred cCccHHHHHHHcCh
Q psy9384 915 CGRNAFRVAAKSGH 928 (978)
Q Consensus 915 ~g~t~l~~A~~~~~ 928 (978)
.|..||+..++-..
T Consensus 118 eglsplq~~~r~~~ 131 (1267)
T KOG0783|consen 118 EGLSPLQFLSRVLS 131 (1267)
T ss_pred cCCCHHHHHhhccc
Confidence 99999999888443
No 105
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.38 E-value=8.6e-06 Score=85.31 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=105.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS 115 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~ 115 (978)
..+++.|+|+||+|||+++..+...+... ...+++. +. ...++..+++.++.++-........
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~---------~~~~~~~-~~----~~~~~~~~l~~i~~~lG~~~~~~~~--- 104 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE---------RVVAAKL-VN----TRVDAEDLLRMVAADFGLETEGRDK--- 104 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC---------CeEEeee-eC----CCCCHHHHHHHHHHHcCCCCCCCCH---
Confidence 45789999999999999999998776421 1122221 11 1235567777777666332111000
Q ss_pred hhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCC
Q psy9384 116 TIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLF 195 (978)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 195 (978)
......+...+..... ...+.++|||-.|..+.. ..+.+..+..... ..
T Consensus 105 ------------------~~~~~~l~~~l~~~~~----~~~~~vliiDe~~~l~~~--------~~~~l~~l~~~~~-~~ 153 (269)
T TIGR03015 105 ------------------AALLRELEDFLIEQFA----AGKRALLVVDEAQNLTPE--------LLEELRMLSNFQT-DN 153 (269)
T ss_pred ------------------HHHHHHHHHHHHHHHh----CCCCeEEEEECcccCCHH--------HHHHHHHHhCccc-CC
Confidence 0001122222222111 245678998888776532 1223333332211 11
Q ss_pred CCceeeeeeecccccchhh-----cccC--ccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhh
Q psy9384 196 PPWLFLFCTVRRQSKSIKK-----MFLG--FHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIK 268 (978)
Q Consensus 196 ~~~~~~~~~sr~~~~~i~~-----~~~~--~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~ 268 (978)
...+.++++..+....... .+.. ...+.+...+ .+|++.|+..++..... ........+..+.|.+.
T Consensus 154 ~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~----~~e~~~~l~~~l~~~g~--~~~~~~~~~~~~~i~~~ 227 (269)
T TIGR03015 154 AKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD----REETREYIEHRLERAGN--RDAPVFSEGAFDAIHRF 227 (269)
T ss_pred CCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC----HHHHHHHHHHHHHHcCC--CCCCCcCHHHHHHHHHH
Confidence 2234556666654321111 0100 1234454433 48999999999874421 11123456789999999
Q ss_pred chhhHHHHHHHHhhhh
Q psy9384 269 SNGCFLYLERVLDGIS 284 (978)
Q Consensus 269 a~g~flw~~~~~~~l~ 284 (978)
++|.+.++...++.+-
T Consensus 228 s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 228 SRGIPRLINILCDRLL 243 (269)
T ss_pred cCCcccHHHHHHHHHH
Confidence 9999999988888763
No 106
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.35 E-value=5.7e-06 Score=89.25 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=108.3
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.|.|++-..+.+..|++.. ..+.++|+|+||+|||+++..+...+... .....+..++..+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~---------~~~~~~i~~~~~~~~-- 80 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE---------DWRENFLELNASDER-- 80 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC---------ccccceEEecccccc--
Confidence 4778888888999999863 23357999999999999999998665431 111122222222111
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384 91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV 170 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~ 170 (978)
. ...++..+.+++...|. . ..+.-+++||..|....
T Consensus 81 ~-~~~~~~~i~~~~~~~~~---------------------------------------~----~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 81 G-IDVIRNKIKEFARTAPV---------------------------------------G----GAPFKIIFLDEADNLTS 116 (319)
T ss_pred c-hHHHHHHHHHHHhcCCC---------------------------------------C----CCCceEEEEeCcccCCH
Confidence 1 11233333333222110 0 02245888998887753
Q ss_pred cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384 171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL 250 (978)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~ 250 (978)
.. ...|.+++. ..++...+|+++......+....+....+++.... ..|+..++...+...
T Consensus 117 ~~--------~~~L~~~le----~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~----~~ei~~~l~~~~~~~--- 177 (319)
T PRK00440 117 DA--------QQALRRTME----MYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK----KEAVAERLRYIAENE--- 177 (319)
T ss_pred HH--------HHHHHHHHh----cCCCCCeEEEEeCCccccchhHHHHhheeeeCCCC----HHHHHHHHHHHHHHc---
Confidence 21 123444443 23334556666543332222222233345554333 478888888777622
Q ss_pred HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++..+.+++.++|.+.++...++.+.
T Consensus 178 ---~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~ 208 (319)
T PRK00440 178 ---GIEITDDALEAIYYVSEGDMRKAINALQAAA 208 (319)
T ss_pred ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1234566788899999999999887777654
No 107
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.33 E-value=8.9e-07 Score=57.63 Aligned_cols=31 Identities=48% Similarity=0.743 Sum_probs=16.6
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Q psy9384 378 GQTALNVAAHQGFVDAVQILLEAGANINHTD 408 (978)
Q Consensus 378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 408 (978)
|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 4555555555555555555555555554443
No 108
>KOG0782|consensus
Probab=98.32 E-value=1.8e-06 Score=90.17 Aligned_cols=120 Identities=26% Similarity=0.311 Sum_probs=97.2
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchH
Q psy9384 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673 (978)
Q Consensus 594 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 673 (978)
+..|+..+++--++....+|.+.-..+.+..+.||+|+..|+-++|+|++++|+. --.+..+..|.|+
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~------------elld~~de~get~ 937 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS------------ELLDMADETGETA 937 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH------------HHHHHHhhhhhHH
Confidence 3445555555445555667778888888889999999999999999999999853 2345567889999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q psy9384 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725 (978)
Q Consensus 674 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ 725 (978)
||.|+..++-.+.++|++.|+.....|..|.||-..|-+.|..++..||-..
T Consensus 938 lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 938 LHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 9999999999999999999999988899999999999999999998888654
No 109
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.30 E-value=1e-05 Score=88.08 Aligned_cols=217 Identities=15% Similarity=0.109 Sum_probs=110.0
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.|++-+.+.+.+|+.++ ..+.+.++|+||+|||+++..+...+.... .... +.+++..+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-------~~~~--~~~i~~~~--- 76 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDP-------WENN--FTEFNVAD--- 76 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcc-------cccc--eEEechhh---
Confidence 45789988889999999864 223578999999999999999987664311 0111 22322111
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
+.......+ ...|.+...+... ... . ......+..++.............-++|||-+|...
T Consensus 77 -----~~~~~~~~~-~~~~~~~~~~~~~---~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~ 138 (337)
T PRK12402 77 -----FFDQGKKYL-VEDPRFAHFLGTD---KRI-R--------SSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR 138 (337)
T ss_pred -----hhhcchhhh-hcCcchhhhhhhh---hhh-c--------cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC
Confidence 000000111 1112211111110 000 0 001123333322221111111233489999998875
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
.. ....|.+++... +...++|+++......+...-+....+.+... ..+++..++...+...
T Consensus 139 ~~--------~~~~L~~~le~~----~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~----~~~~~~~~l~~~~~~~-- 200 (337)
T PRK12402 139 ED--------AQQALRRIMEQY----SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAP----TDDELVDVLESIAEAE-- 200 (337)
T ss_pred HH--------HHHHHHHHHHhc----cCCCeEEEEeCChhhCchhhcCCceEEEecCC----CHHHHHHHHHHHHHHc--
Confidence 32 122344554432 33445666654333222222223334444322 3478888888766522
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
......+..+.|++.+.|.+..+...++...
T Consensus 201 ----~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 201 ----GVDYDDDGLELIAYYAGGDLRKAILTLQTAA 231 (337)
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1234567888999999999887766666543
No 110
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.27 E-value=3.8e-05 Score=86.69 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=115.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHH
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAF 114 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~ 114 (978)
.+.+++.|+.++|+|||||++..++.+. +...|+++-++. .-..+..+++.|+.-|-.-.|...+..
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~~~~----------~~~~v~Wlslde---~dndp~rF~~yLi~al~~~~p~~~~~a 101 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRELAA----------DGAAVAWLSLDE---SDNDPARFLSYLIAALQQATPTLGDEA 101 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHhcC----------cccceeEeecCC---ccCCHHHHHHHHHHHHHHhCccccHHH
Confidence 3779999999999999999999986322 366788776664 445777888888888887777666555
Q ss_pred HhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCC
Q psy9384 115 STIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHL 194 (978)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~ 194 (978)
..+...+.. .+....+..++. ++....+++++|+|=.--+... .+-.-+..|+. .
T Consensus 102 ~~l~q~~~~----------~~l~~l~~~L~~----Ela~~~~pl~LVlDDyHli~~~-------~l~~~l~fLl~----~ 156 (894)
T COG2909 102 QTLLQKHQY----------VSLESLLSSLLN----ELASYEGPLYLVLDDYHLISDP-------ALHEALRFLLK----H 156 (894)
T ss_pred HHHHHhccc----------ccHHHHHHHHHH----HHHhhcCceEEEeccccccCcc-------cHHHHHHHHHH----h
Confidence 443333221 122233444433 3444466799999977665421 12223444444 6
Q ss_pred CCCceeeeeeecccccchhhccc-CccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhH
Q psy9384 195 FPPWLFLFCTVRRQSKSIKKMFL-GFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCF 273 (978)
Q Consensus 195 ~~~~~~~~~~sr~~~~~i~~~~~-~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~f 273 (978)
.|+++.++++||..++--...++ .-.-++++...-.-..+.-..|+..+.. .+.-+.-...|.++++|--
T Consensus 157 ~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---------l~Ld~~~~~~L~~~teGW~ 227 (894)
T COG2909 157 APENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---------LPLDAADLKALYDRTEGWA 227 (894)
T ss_pred CCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---------CCCChHHHHHHHhhcccHH
Confidence 78899999999887652221111 1122344322222244566777776663 1222233466777777743
No 111
>PF14516 AAA_35: AAA-like domain
Probab=98.26 E-value=2e-05 Score=84.06 Aligned_cols=238 Identities=15% Similarity=0.072 Sum_probs=143.2
Q ss_pred CCCCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeec
Q psy9384 2 TTETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHF 81 (978)
Q Consensus 2 ~~~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff 81 (978)
.|.=+..+..++.|.-+-++..+=+.+ .+..+.|.|+-.+|||+|+..+.+++.+ .+..++|.=
T Consensus 3 ~g~~~~~~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~---------~~~~~v~id 66 (331)
T PF14516_consen 3 GGPLPLDSPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQ---------QGYRCVYID 66 (331)
T ss_pred CCCCCCCCCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHH---------CCCEEEEEE
Confidence 466678888889999777776655554 3579999999999999999999977653 245555555
Q ss_pred cccC-CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEE
Q psy9384 82 CQSY-DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFI 160 (978)
Q Consensus 82 ~~~~-~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i 160 (978)
|..- .....+...+++.++..+..+.. +...+.+.+.+. .. +...+...|.+.+.. ....++++
T Consensus 67 ~~~~~~~~~~~~~~f~~~~~~~i~~~L~-l~~~l~~~w~~~-~~-----------~~~~~~~~~~~~ll~--~~~~~lVL 131 (331)
T PF14516_consen 67 LQQLGSAIFSDLEQFLRWFCEEISRQLK-LDEKLDEYWDEE-IG-----------SKISCTEYFEEYLLK--QIDKPLVL 131 (331)
T ss_pred eecCCCcccCCHHHHHHHHHHHHHHHcC-CChhHHHHHHHh-cC-----------ChhhHHHHHHHHHHh--cCCCCEEE
Confidence 5532 33456788899999999988643 223333433311 11 112223333332211 12578999
Q ss_pred EEeccccccccCCCcCCCcchhhHHHHHHhccCC-CCCceeeeeeecccccchhhcc-cCc---cccccccccchhhhhH
Q psy9384 161 LVDSIDETHVTNKKIYSDKATCSIADLLARNHHL-FPPWLFLFCTVRRQSKSIKKMF-LGF---HKLSLDDLRKSHVIRD 235 (978)
Q Consensus 161 viDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~sr~~~~~i~~~~-~~~---~~i~l~~~~~~~~~~D 235 (978)
+||.+|..-.. +...++++..|+.+....... ...++.++++.+.+...+...- +++ ..+.|..- +.++
T Consensus 132 ~iDEiD~l~~~--~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~F----t~~e 205 (331)
T PF14516_consen 132 FIDEIDRLFEY--PQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDF----TPEE 205 (331)
T ss_pred EEechhhhccC--cchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCC----CHHH
Confidence 99999998642 223356666776666644321 1234556665554332221110 111 13344322 3456
Q ss_pred HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhcc
Q psy9384 236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNG 286 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~ 286 (978)
|+..+... . ....+...++|..-.+|-+-.++.+|..|.+.
T Consensus 206 v~~L~~~~-~---------~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 206 VQELAQRY-G---------LEFSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHhh-h---------ccCCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 65554321 1 11223338899999999999999999999764
No 112
>KOG0818|consensus
Probab=98.25 E-value=3.3e-06 Score=87.19 Aligned_cols=85 Identities=32% Similarity=0.401 Sum_probs=71.8
Q ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384 381 ALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459 (978)
Q Consensus 381 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i 459 (978)
-||..++.|+.+..-.||..|+++|..+ ..|.||||+|++.|+.--+++|+-+|+|+...|.+|.||+.+|-..||.++
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l 215 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL 215 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence 4888888899888888888888888765 368889999999888888888888888888888888888888888888888
Q ss_pred eeeccchHHHHHHHH
Q psy9384 460 TIVLGPLCVVKLLLA 474 (978)
Q Consensus 460 ~~~~~~~~vv~~Ll~ 474 (978)
.+-|++
T Consensus 216 ---------aeRl~e 221 (669)
T KOG0818|consen 216 ---------AERLVE 221 (669)
T ss_pred ---------HHHHHH
Confidence 666655
No 113
>KOG0818|consensus
Probab=98.22 E-value=5.1e-06 Score=85.81 Aligned_cols=86 Identities=27% Similarity=0.381 Sum_probs=80.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhccCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384 346 VLHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS 424 (978)
Q Consensus 346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~ 424 (978)
.||..++.|+++..-.|+. .|++.|+.+. .|.||||.|++.|+..-+++|+-+|+|+...|.+|.||+.+|-..||.
T Consensus 136 QLhasvRt~nlet~LRll~--lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~ 213 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLS--LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH 213 (669)
T ss_pred HHHHHhhcccHHHHHHHHH--cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence 5899999999999999999 8999988764 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q psy9384 425 AVVKLLLQS 433 (978)
Q Consensus 425 ~iv~~Ll~~ 433 (978)
++.+.|++.
T Consensus 214 ~laeRl~e~ 222 (669)
T KOG0818|consen 214 ELAERLVEI 222 (669)
T ss_pred HHHHHHHHH
Confidence 999999875
No 114
>KOG0506|consensus
Probab=98.20 E-value=1.4e-06 Score=89.40 Aligned_cols=91 Identities=25% Similarity=0.303 Sum_probs=86.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHh
Q psy9384 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK 746 (978)
Q Consensus 667 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~ 746 (978)
+..+...+++|++.|+...++-+.-.|.|++..|.+.+|+||.|+..|+.+++++|++..+.+++.+|..|+|||.-|.
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~- 581 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK- 581 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH-
Confidence 3445677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHH
Q psy9384 747 NVTKLSFWYLLIQPLL 762 (978)
Q Consensus 747 ~~~~~~~~~~~~~~Ll 762 (978)
..+|.+++++|.
T Consensus 582 ----~F~h~~v~k~L~ 593 (622)
T KOG0506|consen 582 ----HFKHKEVVKLLE 593 (622)
T ss_pred ----hcCcHHHHHHHH
Confidence 899999999998
No 115
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.19 E-value=1e-05 Score=82.16 Aligned_cols=178 Identities=16% Similarity=0.110 Sum_probs=100.9
Q ss_pred cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHH
Q psy9384 15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQN 94 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~ 94 (978)
.++.++.+++|+... ..+.++|+|+||+|||+|+..+...+.. ....+.|+-|..-.
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~~~---------~~~~~~~i~~~~~~-------- 78 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAAEE---------RGKSAIYLPLAELA-------- 78 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHHHh---------cCCcEEEEeHHHHH--------
Confidence 466778899997643 5678999999999999999999854321 12233333332111
Q ss_pred HHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCC
Q psy9384 95 FIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKK 174 (978)
Q Consensus 95 ~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~ 174 (978)
.. . .+ .+ . .. ...-++|||.+|..+...
T Consensus 79 --~~----~-------~~--------------------------~~-~-------~~---~~~~lLvIDdi~~l~~~~-- 106 (226)
T TIGR03420 79 --QA----D-------PE--------------------------VL-E-------GL---EQADLVCLDDVEAIAGQP-- 106 (226)
T ss_pred --Hh----H-------HH--------------------------HH-h-------hc---ccCCEEEEeChhhhcCCh--
Confidence 00 0 00 00 0 00 011289999999986321
Q ss_pred cCCCcchhhHHHHHHhccCCCCCceeeeeeecccccc-------hhhcccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384 175 IYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKS-------IKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 175 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~-------i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
...+.+..++..... . ...++++++..... +...+.....+.+...+. +++..++......
T Consensus 107 ----~~~~~L~~~l~~~~~-~--~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~----~e~~~~l~~~~~~- 174 (226)
T TIGR03420 107 ----EWQEALFHLYNRVRE-A--GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD----EEKIAALQSRAAR- 174 (226)
T ss_pred ----HHHHHHHHHHHHHHH-c--CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH----HHHHHHHHHHHHH-
Confidence 012234444443211 1 12567777654322 222332234566654433 6667777654431
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
......++..+.|.+...|+...+.-+++.+.
T Consensus 175 -----~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 175 -----RGLQLPDEVADYLLRHGSRDMGSLMALLDALD 206 (226)
T ss_pred -----cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 12345667788888999999999998888775
No 116
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=1.4e-05 Score=95.49 Aligned_cols=239 Identities=17% Similarity=0.195 Sum_probs=146.8
Q ss_pred ccccccchHHH-HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 12 FFCREWAFVKL-VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 12 f~~r~w~~~~~-~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
+.||++=.+.+ ..|-+. ..+.+.+..+.|.+|.|||.|.+.|...... .....+.++|.++.....-
T Consensus 2 l~GRe~ev~~Ll~~f~~v----~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~--------~~~~~i~~~f~q~~~~ipl 69 (849)
T COG3899 2 LYGRETELAQLLAAFDRV----SKGRGEVVLVAGESGIGKSALVNEVHKPITQ--------QRGYFIKGKFDQFERNIPL 69 (849)
T ss_pred CCchHhHHHHHHHHHHHH----hCCCeEEEEEeecCCCcHHHHHHHHHHHHhc--------cceeeeHhhcccccCCCch
Confidence 57898844444 445444 4456779999999999999999999866543 2466777777656655444
Q ss_pred CHH-HHHHHHHHHHhcCCCchhHHHH----hhh-------------------cchhhHhhcchhhhhhCHHHHHHHhhhh
Q psy9384 91 SVQ-NFIQSLVEQFSSSESPFSEAFS----TIV-------------------EDESIKALLKSDQLLQDSDEVFKKALIL 146 (978)
Q Consensus 91 ~~~-~~l~sl~~QL~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (978)
++- ..+|++..||......-....+ +.. .++....... ......+-.++..
T Consensus 70 ~~lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~-----~~~~~r~n~~~~~ 144 (849)
T COG3899 70 SPLVQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSP-----TAAQNRFNLAFLR 144 (849)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhccc-----chhHHHHHHHHHH
Confidence 444 5899999999664432111111 100 0000000000 1111222223333
Q ss_pred hhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhcc--CCCCCceeeeeeecccccchhhcccCcccccc
Q psy9384 147 PLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNH--HLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSL 224 (978)
Q Consensus 147 ~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l 224 (978)
.+........++++|+|-|...|..+ ++.|..+..... ...-..|..+...++....+.+.......|.|
T Consensus 145 ~i~~~~~~~~plVi~leDlhWaD~~S--------L~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L 216 (849)
T COG3899 145 FIQVFTAEEHPLVIVLEDLHWADSAS--------LKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITL 216 (849)
T ss_pred HHHHHHhccCCeEEEEecccccChhH--------HHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEec
Confidence 33333445668999999999998764 456666665443 00001234444455555556666666677887
Q ss_pred ccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhcc
Q psy9384 225 DDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNG 286 (978)
Q Consensus 225 ~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~ 286 (978)
... +..|+..+|.+.+.+. ........+.+.+|.+|+++++.-++..+-+.
T Consensus 217 ~PL----~~~d~~~lV~~~l~~~-------~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 217 APL----SRADTNQLVAATLGCT-------KLLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred CcC----chhhHHHHHHHHhCCc-------ccccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 544 4589999999888743 23345677889999999999999999988653
No 117
>KOG0705|consensus
Probab=98.15 E-value=3.7e-06 Score=88.58 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=68.7
Q ss_pred hhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCC
Q psy9384 861 PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940 (978)
Q Consensus 861 v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~ 940 (978)
+-+|+.+|.....-. ..|.+.++|+||+||..|++.+.++|+=+|+|+-..|..|+|||.||-+.|..++++.|+++|+
T Consensus 640 ~~lLLAhg~~~e~~~-t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gc 718 (749)
T KOG0705|consen 640 AILLLAHGSREEVNE-TCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGC 718 (749)
T ss_pred HHHHHhccCchhhhc-cccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence 334455554333222 3344455999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccc
Q psy9384 941 DSEYF 945 (978)
Q Consensus 941 ~~~~~ 945 (978)
..+..
T Consensus 719 p~e~~ 723 (749)
T KOG0705|consen 719 PDECG 723 (749)
T ss_pred Ccccc
Confidence 77653
No 118
>PLN03025 replication factor C subunit; Provisional
Probab=98.14 E-value=2.3e-05 Score=83.59 Aligned_cols=191 Identities=13% Similarity=0.128 Sum_probs=103.5
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.+.|.+-+.+.++.|+.+. .-+-+.++|+||+|||+++..+...+.... ....+...+.. +.+
T Consensus 14 ~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~---------~~~~~~eln~s--d~~ 76 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPN---------YKEAVLELNAS--DDR 76 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhccc---------Cccceeeeccc--ccc
Confidence 4556666667788888864 223478999999999999999986653210 00011111111 111
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384 91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV 170 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~ 170 (978)
. ...+|.++..++..... . .....-+++||-.|....
T Consensus 77 ~-~~~vr~~i~~~~~~~~~-----------------------------------------~-~~~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 77 G-IDVVRNKIKMFAQKKVT-----------------------------------------L-PPGRHKIVILDEADSMTS 113 (319)
T ss_pred c-HHHHHHHHHHHHhcccc-----------------------------------------C-CCCCeEEEEEechhhcCH
Confidence 1 12334333333221000 0 012335888998888763
Q ss_pred cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384 171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL 250 (978)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~ 250 (978)
.. + ..|.+.+. ..+...++++++......+....+.+..+++.... .+++..++.......
T Consensus 114 ~a----q----~aL~~~lE----~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~----~~~l~~~L~~i~~~e--- 174 (319)
T PLN03025 114 GA----Q----QALRRTME----IYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS----DQEILGRLMKVVEAE--- 174 (319)
T ss_pred HH----H----HHHHHHHh----cccCCceEEEEeCCccccchhHHHhhhcccCCCCC----HHHHHHHHHHHHHHc---
Confidence 31 1 12333333 33445566666654433233333334456665433 367777777655421
Q ss_pred HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
.-...++..+.+++.++|...-+-..++..
T Consensus 175 ---gi~i~~~~l~~i~~~~~gDlR~aln~Lq~~ 204 (319)
T PLN03025 175 ---KVPYVPEGLEAIIFTADGDMRQALNNLQAT 204 (319)
T ss_pred ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 123345678899999999987777666643
No 119
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.4e-05 Score=88.29 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=110.8
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..++|-+.+...|+.|+...+ -...+.|+|+||+|||+++..+...+.... ......+..|.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~-------~~~~~pCg~C~------ 77 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQ-------GVTATPCGVCS------ 77 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCcc-------CCCCCCCCCch------
Confidence 456788888888999988642 345678999999999999999997764310 00001111221
Q ss_pred cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
-+.++... .+.+.+ + .. .+ ..-.+.++.++... .......+.-++|||-.|..
T Consensus 78 ---------sC~~i~~g~~~DviE----i-dA---as--------~~kVDdIReLie~v-~~~P~~gk~KViIIDEAh~L 131 (944)
T PRK14949 78 ---------SCVEIAQGRFVDLIE----V-DA---AS--------RTKVDDTRELLDNV-QYRPSRGRFKVYLIDEVHML 131 (944)
T ss_pred ---------HHHHHhcCCCceEEE----e-cc---cc--------ccCHHHHHHHHHHH-HhhhhcCCcEEEEEechHhc
Confidence 01111111 011000 0 00 00 00001112111111 11111134468888888887
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
..+. ...|.+.+. ..|.++++|+.+......+.-.++.+..+.+..+. ..+|..|+.+.+...
T Consensus 132 T~eA--------qNALLKtLE----EPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs----~eEI~~~L~~il~~E- 194 (944)
T PRK14949 132 SRSS--------FNALLKTLE----EPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLT----QDEIGTQLNHILTQE- 194 (944)
T ss_pred CHHH--------HHHHHHHHh----ccCCCeEEEEECCCchhchHHHHHhheEEeCCCCC----HHHHHHHHHHHHHHc-
Confidence 5321 223333333 34556777776544333232334456667775554 489999998877642
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG 282 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~ 282 (978)
......+....|...++|....+-..++.
T Consensus 195 -----gI~~edeAL~lIA~~S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 195 -----QLPFEAEALTLLAKAANGSMRDALSLTDQ 223 (944)
T ss_pred -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12234567788899999998887777654
No 120
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=2.2e-05 Score=85.31 Aligned_cols=106 Identities=10% Similarity=0.062 Sum_probs=64.5
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD 235 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D 235 (978)
+.-++|||-.|-...+. ...|.+.+. .-|.++.+|+++......+....+.+..+.+..+.. .+
T Consensus 121 ~~KV~IIDEah~Ls~~A--------~NALLKtLE----EPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~----~~ 184 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQS--------FNALLKTLE----EPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPL----SV 184 (484)
T ss_pred CCEEEEEechhhcCHHH--------HHHHHHHhh----cCCCceEEEeecCChhhccHHHHhhhheeeecCCCH----HH
Confidence 34588888888775321 223333332 334566766666543332233344555566654443 68
Q ss_pred HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
|..|+...+... .....++....|++.|+|...-|-..++.+
T Consensus 185 i~~~L~~i~~~E------gi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~ 226 (484)
T PRK14956 185 LQDYSEKLCKIE------NVQYDQEGLFWIAKKGDGSVRDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 888888766532 123345678999999999988888777764
No 121
>KOG0522|consensus
Probab=98.08 E-value=8.9e-06 Score=85.61 Aligned_cols=89 Identities=30% Similarity=0.482 Sum_probs=77.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS 424 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~ 424 (978)
-++|++....+.+-....+.......++..|..|.||||+|+..|+.+.++.|+..|+++..+|..|++|||.|+..|+.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~ 101 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE 101 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence 35889988888776666444225667888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q psy9384 425 AVVKLLLQS 433 (978)
Q Consensus 425 ~iv~~Ll~~ 433 (978)
+++..++.+
T Consensus 102 q~i~~vlr~ 110 (560)
T KOG0522|consen 102 QIITEVLRH 110 (560)
T ss_pred HHHHHHHHH
Confidence 988888875
No 122
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=3.6e-05 Score=87.04 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=64.5
Q ss_pred cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHH
Q psy9384 157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDM 236 (978)
Q Consensus 157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di 236 (978)
.-++|||-.|....+. ...|.+.+. ..|..+++|+++......+....+.+..+.+..+. ..+|
T Consensus 120 ~KVIIIDEad~Ls~~A--------~NALLKtLE----EPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls----~eeI 183 (709)
T PRK08691 120 YKVYIIDEVHMLSKSA--------FNAMLKTLE----EPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMT----AQQV 183 (709)
T ss_pred cEEEEEECccccCHHH--------HHHHHHHHH----hCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCC----HHHH
Confidence 3578888888765321 223444444 23456777777644332222333445555654444 3788
Q ss_pred HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
..++...+... ......+....|++.++|....+...++.+.
T Consensus 184 ~~~L~~Il~kE------gi~id~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 184 ADHLAHVLDSE------KIAYEPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHc------CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99988776632 1233456778999999999999888887654
No 123
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=8.5e-05 Score=84.18 Aligned_cols=205 Identities=13% Similarity=0.093 Sum_probs=106.8
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS 91 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~ 91 (978)
++|.+-+.+.++.|+++.+ -...+.|+|++|+|||+++..+...+.. ...... .
T Consensus 18 VIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnC-------------------e~~~~~--~ 71 (830)
T PRK07003 18 LVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNC-------------------ETGVTS--Q 71 (830)
T ss_pred HcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcC-------------------ccCCCC--C
Confidence 4566666667889988642 3456789999999999999999865431 111000 0
Q ss_pred HHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384 92 VQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV 170 (978)
Q Consensus 92 ~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~ 170 (978)
+-+ .+..+.++.. .++++.+ + .. . + ....+.+++++....... ...+.-++|||-.|....
T Consensus 72 PCG-~C~sCr~I~~G~h~DviE----I-DA-a--s--------~rgVDdIReLIe~a~~~P-~~gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 72 PCG-VCRACREIDEGRFVDYVE----M-DA-A--S--------NRGVDEMAALLERAVYAP-VDARFKVYMIDEVHMLTN 133 (830)
T ss_pred CCc-ccHHHHHHhcCCCceEEE----e-cc-c--c--------cccHHHHHHHHHHHHhcc-ccCCceEEEEeChhhCCH
Confidence 000 0111222221 1111110 0 00 0 0 000122333333221111 112234677888887753
Q ss_pred cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384 171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL 250 (978)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~ 250 (978)
+. ...|.+.+. ..|.++++|+++......+.-..+.+..+.+..+.. ++|..++...+...
T Consensus 134 ~A--------~NALLKtLE----EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~----eeIv~~L~~Il~~E--- 194 (830)
T PRK07003 134 HA--------FNAMLKTLE----EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA----GHIVSHLERILGEE--- 194 (830)
T ss_pred HH--------HHHHHHHHH----hcCCCeEEEEEECChhhccchhhhheEEEecCCcCH----HHHHHHHHHHHHHc---
Confidence 21 223444444 345577888877665543444455666777765544 77877776655421
Q ss_pred HhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384 251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG 282 (978)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~ 282 (978)
......+....|.+.++|...-+-..++.
T Consensus 195 ---gI~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 195 ---RIAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12234567788889999987765555443
No 124
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.97 E-value=0.00015 Score=74.83 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc--chhh-cccCccccccccccchh
Q psy9384 155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK--SIKK-MFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~--~i~~-~~~~~~~i~l~~~~~~~ 231 (978)
.++++++||-+--.+..- ++ .|.-.+. .+..+++-...+.| .+.. .++.+..+++..++.
T Consensus 103 gr~tiLflDEIHRfnK~Q----QD----~lLp~vE-------~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~-- 165 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQ----QD----ALLPHVE-------NGTIILIGATTENPSFELNPALLSRARVFELKPLSS-- 165 (436)
T ss_pred CCceEEEEehhhhcChhh----hh----hhhhhhc-------CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCH--
Confidence 567899988777766431 11 1211111 12334444444333 2333 344556677765554
Q ss_pred hhhHHHHHHHHHhc-CchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHh
Q psy9384 232 VIRDMQQYILLRLA-SEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLD 281 (978)
Q Consensus 232 ~~~Di~~yi~~~l~-~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~ 281 (978)
+||...+..-+. +...+.+......++..+.|+..++|--.-+-..++
T Consensus 166 --~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE 214 (436)
T COG2256 166 --EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLE 214 (436)
T ss_pred --HHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHH
Confidence 889888877333 223333333335577889999999998444333333
No 125
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.96 E-value=5.7e-05 Score=76.38 Aligned_cols=108 Identities=17% Similarity=0.089 Sum_probs=61.1
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc-------chhhcccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK-------SIKKMFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~-------~i~~~~~~~~~i~l~~~~~~~ 231 (978)
+++||-+|-+... +... +.+.+++..... ..+..++++|+.++. +++.++.....+++...+
T Consensus 100 lliiDdi~~~~~~--~~~~----~~lf~l~n~~~e--~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~--- 168 (235)
T PRK08084 100 LVCIDNIECIAGD--ELWE----MAIFDLYNRILE--SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLS--- 168 (235)
T ss_pred EEEEeChhhhcCC--HHHH----HHHHHHHHHHHH--cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCC---
Confidence 6888888877532 1111 123344443321 112357777765533 333444333556665433
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.++....+..+.... .-...+++.+-|++++.|.+.-+.-+++.|.
T Consensus 169 -~~~~~~~l~~~a~~~------~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 169 -DEEKLQALQLRARLR------GFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 245555555434311 1345678999999999999988888887764
No 126
>KOG0511|consensus
Probab=97.96 E-value=2.3e-05 Score=78.40 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=58.2
Q ss_pred hHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCC--cccccchhhhhh
Q psy9384 886 KISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS--EYFVHYYYYYNS 954 (978)
Q Consensus 886 ~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~--~~~~~~~~l~~A 954 (978)
-|..||+.|.++.|++|++.|.++|..|.....||.+|+-.||.++|++|+++||=. +...|.-|+..|
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga 109 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA 109 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence 578899999999999999999999999999999999999999999999999999744 445554444333
No 127
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00012 Score=82.09 Aligned_cols=207 Identities=13% Similarity=0.070 Sum_probs=110.9
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.++|.+.+...+..|+.+.+ -...+.++|+||+|||+++..+...+..... .....+-.|
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~-------~~~~pCg~C-------- 75 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETG-------VTSTPCEVC-------- 75 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC-------CCCCCCccC--------
Confidence 34677777778899998642 3567899999999999999999866532100 000000011
Q ss_pred CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.-++++.. ..+++.+. .. .+ ....+.+++++...- ......+.-++|||-.|...
T Consensus 76 -------~sC~~I~~g~hpDviEI-----DA---As--------~~~VddIReli~~~~-y~P~~gk~KV~IIDEVh~LS 131 (702)
T PRK14960 76 -------ATCKAVNEGRFIDLIEI-----DA---AS--------RTKVEDTRELLDNVP-YAPTQGRFKVYLIDEVHMLS 131 (702)
T ss_pred -------HHHHHHhcCCCCceEEe-----cc---cc--------cCCHHHHHHHHHHHh-hhhhcCCcEEEEEechHhcC
Confidence 11122211 22221110 00 00 000122333222211 11111233477788888775
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
.+. ...|.+.+. ..|..+++|+++...........+.+..+++..+.. .+|..++...+...
T Consensus 132 ~~A--------~NALLKtLE----EPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~----eEI~k~L~~Il~kE-- 193 (702)
T PRK14960 132 THS--------FNALLKTLE----EPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAV----DEITKHLGAILEKE-- 193 (702)
T ss_pred HHH--------HHHHHHHHh----cCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCH----HHHHHHHHHHHHHc--
Confidence 321 234455554 334566777766543322223335566667754443 78888888776532
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
......+....|++.++|....+-..++.+
T Consensus 194 ----gI~id~eAL~~IA~~S~GdLRdALnLLDQa 223 (702)
T PRK14960 194 ----QIAADQDAIWQIAESAQGSLRDALSLTDQA 223 (702)
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 223445677889999999998887776654
No 128
>KOG2384|consensus
Probab=97.92 E-value=2.5e-05 Score=70.59 Aligned_cols=68 Identities=24% Similarity=0.223 Sum_probs=62.5
Q ss_pred cCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcC-CCCCCCcccCccHHHHHHHcChHHHHHHHHHcCC
Q psy9384 868 FSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYG-ADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940 (978)
Q Consensus 868 g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~ 940 (978)
+.++|.+| ..| .|||++|+..|+.+.+.||+.+| +.+...|..|.++..+|-+.|+.++|..|.++-.
T Consensus 2 e~~in~rD-~fg----WTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ 70 (223)
T KOG2384|consen 2 EGNINARD-AFG----WTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR 70 (223)
T ss_pred CCCccchh-hhc----chHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence 35677788 778 99999999999999999999999 8999999999999999999999999999998843
No 129
>KOG0511|consensus
Probab=97.91 E-value=2.6e-05 Score=78.04 Aligned_cols=54 Identities=48% Similarity=0.597 Sum_probs=26.7
Q ss_pred HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy9384 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435 (978)
Q Consensus 382 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~ 435 (978)
|..||+.|..+.|++|++.|.++|..|....+||.+|+..||.++|++|+++|+
T Consensus 40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA 93 (516)
T KOG0511|consen 40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA 93 (516)
T ss_pred HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence 444444455555555555444444444444445555555555555555555443
No 130
>PRK04195 replication factor C large subunit; Provisional
Probab=97.89 E-value=0.00017 Score=81.69 Aligned_cols=193 Identities=18% Similarity=0.162 Sum_probs=104.0
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..+.|++-..+.+.+|+..-. .....+.+.|+|+||+|||+++..+..++. .-+..++..+ .
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el~--------------~~~ielnasd--~ 75 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDYG--------------WEVIELNASD--Q 75 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEEcccc--c
Confidence 345666666677888877521 111257899999999999999999986542 1112222221 1
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
++ ...++.++...+...+ +. ..++-+||||-.|...
T Consensus 76 r~-~~~i~~~i~~~~~~~s------------------------------------------l~-~~~~kvIiIDEaD~L~ 111 (482)
T PRK04195 76 RT-ADVIERVAGEAATSGS------------------------------------------LF-GARRKLILLDEVDGIH 111 (482)
T ss_pred cc-HHHHHHHHHHhhccCc------------------------------------------cc-CCCCeEEEEecCcccc
Confidence 11 1223333332221100 00 0134689999999876
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchh-hcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-KMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
... .......|.+++... ...+|+++........ ..-+.+..+.+..... .++..++...+...
T Consensus 112 ~~~----d~~~~~aL~~~l~~~------~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~----~~i~~~L~~i~~~e- 176 (482)
T PRK04195 112 GNE----DRGGARAILELIKKA------KQPIILTANDPYDPSLRELRNACLMIEFKRLST----RSIVPVLKRICRKE- 176 (482)
T ss_pred ccc----chhHHHHHHHHHHcC------CCCEEEeccCccccchhhHhccceEEEecCCCH----HHHHHHHHHHHHHc-
Confidence 321 112234455555422 1235555543332111 1222344566644333 67777777655421
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
......++.+.|++++.|...-+-..++.+.
T Consensus 177 -----gi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 177 -----GIECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 1224467889999999999887766666544
No 131
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00012 Score=79.51 Aligned_cols=207 Identities=11% Similarity=0.085 Sum_probs=106.0
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..+.|-+.+.+.++.++...+ -...+.++|+||+|||+++..+...+...... ...+ .
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~----------------~~~p-c 73 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI----------------TSNP-C 73 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC----------------CCCC-C
Confidence 445677777778888887532 34568899999999999999998665321000 0000 0
Q ss_pred cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
.. +..+.++... .+++.+. . +. + ....+.+++++.. +.........-++|||-.|..
T Consensus 74 ~~-----c~~c~~~~~~~~~d~~~~-----~-~~--~--------~~~v~~ir~i~~~-~~~~p~~~~~kviIIDEa~~l 131 (363)
T PRK14961 74 RK-----CIICKEIEKGLCLDLIEI-----D-AA--S--------RTKVEEMREILDN-IYYSPSKSRFKVYLIDEVHML 131 (363)
T ss_pred CC-----CHHHHHHhcCCCCceEEe-----c-cc--c--------cCCHHHHHHHHHH-HhcCcccCCceEEEEEChhhc
Confidence 00 0011111111 1111000 0 00 0 0001122222221 111111123458899988887
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc-ccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
.... ...+.+.+. ..|..+++++++.... .+... .+.+..+++...+ .+++..|+..++...
T Consensus 132 ~~~a--------~naLLk~lE----e~~~~~~fIl~t~~~~-~l~~tI~SRc~~~~~~~l~----~~el~~~L~~~~~~~ 194 (363)
T PRK14961 132 SRHS--------FNALLKTLE----EPPQHIKFILATTDVE-KIPKTILSRCLQFKLKIIS----EEKIFNFLKYILIKE 194 (363)
T ss_pred CHHH--------HHHHHHHHh----cCCCCeEEEEEcCChH-hhhHHHHhhceEEeCCCCC----HHHHHHHHHHHHHHc
Confidence 6321 112333333 2345666777664432 23332 2334556665443 378888888777632
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
.....++..+.+++.++|...-+-..++.+
T Consensus 195 ------g~~i~~~al~~ia~~s~G~~R~al~~l~~~ 224 (363)
T PRK14961 195 ------SIDTDEYALKLIAYHAHGSMRDALNLLEHA 224 (363)
T ss_pred ------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122345667788899999988777666655
No 132
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00014 Score=81.46 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=110.3
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..+.|++.+.+.+..|+...+ -+..+.++|+||+|||++|..+...+..... ... ..|.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~-------~~~---~~Cg------ 74 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNP-------KDG---DCCN------ 74 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCCC-------CCC---CCCc------
Confidence 346788888899999987632 3467889999999999999999866542110 000 0111
Q ss_pred cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
. +..++++... +|++.+. .. .+ ....+.++.++.. +.......+.=++|||-.|..
T Consensus 75 -~-----C~sCr~i~~~~h~DiieI-----da---as--------~igVd~IReIi~~-~~~~P~~~~~KVIIIDEad~L 131 (605)
T PRK05896 75 -S-----CSVCESINTNQSVDIVEL-----DA---AS--------NNGVDEIRNIIDN-INYLPTTFKYKVYIIDEAHML 131 (605)
T ss_pred -c-----cHHHHHHHcCCCCceEEe-----cc---cc--------ccCHHHHHHHHHH-HHhchhhCCcEEEEEechHhC
Confidence 0 1122222221 2221110 00 00 0001122222221 111111122336888888876
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
..+. ...|.+.+. ..|..+.+|+++.... .+.. ..+.+..+++.... ..++..++...+...
T Consensus 132 t~~A--------~NaLLKtLE----EPp~~tvfIL~Tt~~~-KLl~TI~SRcq~ieF~~Ls----~~eL~~~L~~il~ke 194 (605)
T PRK05896 132 STSA--------WNALLKTLE----EPPKHVVFIFATTEFQ-KIPLTIISRCQRYNFKKLN----NSELQELLKSIAKKE 194 (605)
T ss_pred CHHH--------HHHHHHHHH----hCCCcEEEEEECCChH-hhhHHHHhhhhhcccCCCC----HHHHHHHHHHHHHHc
Confidence 5321 123444444 2344555655553322 2332 23345566665444 378888888777522
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
......+..+.+++.++|....|...++.+.
T Consensus 195 ------gi~Is~eal~~La~lS~GdlR~AlnlLekL~ 225 (605)
T PRK05896 195 ------KIKIEDNAIDKIADLADGSLRDGLSILDQLS 225 (605)
T ss_pred ------CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1223455678899999999888888888765
No 133
>KOG0705|consensus
Probab=97.87 E-value=4.4e-05 Score=80.78 Aligned_cols=94 Identities=27% Similarity=0.327 Sum_probs=80.7
Q ss_pred HHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy9384 627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706 (978)
Q Consensus 627 L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 706 (978)
|..|+....+..+-+|+.+|.... .+....+..|.|+||+|+..|++.+.++|+=+|+|+-..|..|+|+
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg~~~e----------~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~ 697 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHGSREE----------VNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTA 697 (749)
T ss_pred HHHHHHHHHHHHHHHHHhccCchh----------hhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchh
Confidence 556777788899999999985422 3344456778999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHhhcCCCCc
Q psy9384 707 LILAAQDGHYHLVEMFLEQYEANVN 731 (978)
Q Consensus 707 L~~A~~~~~~~iv~~Ll~~~~~~~~ 731 (978)
|.||-+.|..+++..|++. |+..+
T Consensus 698 l~yar~a~sqec~d~llq~-gcp~e 721 (749)
T KOG0705|consen 698 LFYARQAGSQECIDVLLQY-GCPDE 721 (749)
T ss_pred hhhHhhcccHHHHHHHHHc-CCCcc
Confidence 9999999999999999996 77643
No 134
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.86 E-value=0.00012 Score=78.18 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=38.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..|+||+-+.+.+..|+...... .+..+.+.|+|+||+|||+|+..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999998742100 1123458899999999999999998554
No 135
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00015 Score=81.30 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=64.5
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD 235 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D 235 (978)
..-++|||-.|....+. ...|.+.+. ..|..+.+|+++......+....+.+..+++..+.. .+
T Consensus 119 ~~kViIIDEa~~ls~~a--------~naLLK~LE----epp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~----~e 182 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQS--------FNALLKTLE----EPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ----AD 182 (546)
T ss_pred CcEEEEEechhhccHHH--------HHHHHHHHh----cCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCH----HH
Confidence 45688888888876421 223444444 345566666655332222223334556667755443 78
Q ss_pred HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
|..++...+... .....++..+.+++.++|....+-..++.+.
T Consensus 183 I~~~L~~il~~e------gi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 183 IKDQLKIILAKE------NINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 998888766532 1234456678899999998887777776553
No 136
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00019 Score=78.83 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=62.4
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcc-cCccccccccccchhhhh
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMF-LGFHKLSLDDLRKSHVIR 234 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~-~~~~~i~l~~~~~~~~~~ 234 (978)
+.-++|||-.|....+. ...|.+.+. ..|+...+|+++.... .+.+.+ +.+..+++..+. .+
T Consensus 127 ~~kvvIIdea~~l~~~~--------~~~LLk~LE----ep~~~t~~Il~t~~~~-kl~~tl~sR~~~v~f~~l~----~~ 189 (397)
T PRK14955 127 RYRVYIIDEVHMLSIAA--------FNAFLKTLE----EPPPHAIFIFATTELH-KIPATIASRCQRFNFKRIP----LE 189 (397)
T ss_pred CeEEEEEeChhhCCHHH--------HHHHHHHHh----cCCCCeEEEEEeCChH-HhHHHHHHHHHHhhcCCCC----HH
Confidence 34588898888875321 123344443 2334445555443222 233222 223445554333 47
Q ss_pred HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
|+..|+...+... .....++..+.|++.++|.+..+...++.+.
T Consensus 190 ei~~~l~~~~~~~------g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 190 EIQQQLQGICEAE------GISVDADALQLIGRKAQGSMRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999998777622 2335567789999999999998888877664
No 137
>KOG2384|consensus
Probab=97.82 E-value=4.4e-05 Score=69.12 Aligned_cols=76 Identities=29% Similarity=0.294 Sum_probs=66.7
Q ss_pred CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q psy9384 368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG-ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG 443 (978)
Q Consensus 368 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~ 443 (978)
+.++|.+|..|+|+++.|+..|+.+.|.||+.+| +.+...|..+.+++.+|-..|..++++.|.+...+-...++.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ns 78 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNS 78 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccC
Confidence 4578999999999999999999999999999999 889999999999999999999999999999875554443333
No 138
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.80 E-value=0.00027 Score=89.23 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=43.0
Q ss_pred CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...+.|+||+--++++.+|+.-. ..+.+++-|.|++|+||||||..+...+.
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 34567999999999999999752 33668999999999999999999986543
No 139
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00026 Score=80.69 Aligned_cols=207 Identities=13% Similarity=0.056 Sum_probs=112.5
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.++|-+-+...+...+...+ -...++++|+||+|||+++..+...+.... . + ...+- .
T Consensus 17 divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~----------~----~--~~~pC-g 74 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCET----------G----I--TATPC-G 74 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhcc----------C----C--CCCCC-C
Confidence 45566777777777777531 234478999999999999999986653210 0 0 00000 0
Q ss_pred CHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 91 SVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
-+..++++... +|++.+. .. . + ..-.+.+++++.... ......+.-++|||..|...
T Consensus 75 -----~C~~C~~i~~g~~~D~iei-----da-a--s--------~~~VddiR~li~~~~-~~p~~g~~KV~IIDEah~Ls 132 (647)
T PRK07994 75 -----ECDNCREIEQGRFVDLIEI-----DA-A--S--------RTKVEDTRELLDNVQ-YAPARGRFKVYLIDEVHMLS 132 (647)
T ss_pred -----CCHHHHHHHcCCCCCceee-----cc-c--c--------cCCHHHHHHHHHHHH-hhhhcCCCEEEEEechHhCC
Confidence 12455555542 2222111 00 0 0 000123333332211 11112344588899888876
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
.+. ...|.+.+. .-|.++++|+++......+.-..+.+..+.+..+.. ++|..|+...+...
T Consensus 133 ~~a--------~NALLKtLE----EPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~----~ei~~~L~~il~~e-- 194 (647)
T PRK07994 133 RHS--------FNALLKTLE----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV----EQIRQQLEHILQAE-- 194 (647)
T ss_pred HHH--------HHHHHHHHH----cCCCCeEEEEecCCccccchHHHhhheEeeCCCCCH----HHHHHHHHHHHHHc--
Confidence 432 223444444 345567777766544332223344566677755443 79999998877532
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
.....++....|+..|+|....+-..++..
T Consensus 195 ----~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqa 224 (647)
T PRK07994 195 ----QIPFEPRALQLLARAADGSMRDALSLTDQA 224 (647)
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122334566788899999998887777543
No 140
>KOG0522|consensus
Probab=97.79 E-value=4e-05 Score=80.87 Aligned_cols=80 Identities=29% Similarity=0.362 Sum_probs=70.4
Q ss_pred cHHHHHHHhCCHHHHHHHH--HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCc
Q psy9384 380 TALNVAAHQGFVDAVQILL--EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL 457 (978)
Q Consensus 380 t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 457 (978)
.|+|+++.....+-...++ +.+..++.+|..|+||||+|+..|+.+.++.|+.+|+++..+++.|++|||.|+..|+.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~ 101 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE 101 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence 4599999887766555433 34556888999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q psy9384 458 EV 459 (978)
Q Consensus 458 ~i 459 (978)
++
T Consensus 102 q~ 103 (560)
T KOG0522|consen 102 QI 103 (560)
T ss_pred HH
Confidence 88
No 141
>KOG3609|consensus
Probab=97.78 E-value=0.00011 Score=82.58 Aligned_cols=133 Identities=23% Similarity=0.158 Sum_probs=101.3
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCC----CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHH
Q psy9384 557 GMTPLLVAAFEGHRDVCEILLENE----ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632 (978)
Q Consensus 557 ~~t~L~~a~~~~~~~iv~~Ll~~g----~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 632 (978)
+..-...|+.+|+...|+..++.. .++|..|.-|+++|+.|+.+.+.+++++|++..... ..+|-.|+.
T Consensus 25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~ 97 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA 97 (822)
T ss_pred hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence 334567889999998888877642 456777888999999999999999999999886644 457889999
Q ss_pred cCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q psy9384 633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD 700 (978)
Q Consensus 633 ~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d 700 (978)
.|..++|+.++.+......... ........-..+.||+.+|+..+++|+++.|+++|+.+..+.
T Consensus 98 ~~~v~~VE~ll~~~~~~~~~~~----~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH 161 (822)
T KOG3609|consen 98 VGSVPLVELLLVHFVDAPYLER----SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH 161 (822)
T ss_pred HHHHHHHHHHHhcccccchhcc----ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence 9999999999988643222111 001111223456799999999999999999999999887653
No 142
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0004 Score=76.12 Aligned_cols=199 Identities=13% Similarity=0.158 Sum_probs=104.0
Q ss_pred CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCC
Q psy9384 9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLA 88 (978)
Q Consensus 9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~ 88 (978)
-..+.|.+-+.+.+.+|+...+ -.+.+.++|+||+|||+++..+...+...... .+.....|-++.-+..
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~----~~~~~~~~~~~~l~~~- 85 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYD----DPNEDFSFNIFELDAA- 85 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC----CCCCCCCcceEEeccc-
Confidence 3455677777888999998632 44678899999999999999998765431100 0000011111110000
Q ss_pred ccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 89 TFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 89 ~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
......-++.++.++.. .....++-+++||-.|..
T Consensus 86 ~~~~~~~i~~l~~~~~~---------------------------------------------~p~~~~~kiviIDE~~~l 120 (367)
T PRK14970 86 SNNSVDDIRNLIDQVRI---------------------------------------------PPQTGKYKIYIIDEVHML 120 (367)
T ss_pred cCCCHHHHHHHHHHHhh---------------------------------------------ccccCCcEEEEEeChhhc
Confidence 00001112222222110 000123347888888876
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
... ....+.+.+. ..|....+|+++......+....+.+..+++.... .+++..++...+.+.
T Consensus 121 ~~~--------~~~~ll~~le----~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~----~~~l~~~l~~~~~~~- 183 (367)
T PRK14970 121 SSA--------AFNAFLKTLE----EPPAHAIFILATTEKHKIIPTILSRCQIFDFKRIT----IKDIKEHLAGIAVKE- 183 (367)
T ss_pred CHH--------HHHHHHHHHh----CCCCceEEEEEeCCcccCCHHHHhcceeEecCCcc----HHHHHHHHHHHHHHc-
Confidence 422 1122333332 22334455554432222222222334455554333 478888888766522
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.-...++..+.|+++++|...-+.-.++.+.
T Consensus 184 -----g~~i~~~al~~l~~~~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 184 -----GIKFEDDALHIIAQKADGALRDALSIFDRVV 214 (367)
T ss_pred -----CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1224457788899999999888877777664
No 143
>PTZ00202 tuzin; Provisional
Probab=97.77 E-value=0.00014 Score=76.55 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=61.3
Q ss_pred CCCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecc
Q psy9384 3 TETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFC 82 (978)
Q Consensus 3 ~~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~ 82 (978)
++.|-+...|.||+--+..+.+=+.+. +.+..++..|+|++|||||+|+..++..+. .++||..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~---d~~~privvLtG~~G~GKTTLlR~~~~~l~-------------~~qL~vN 318 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRL---DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-------------MPAVFVD 318 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhcc---CCCCceEEEEECCCCCCHHHHHHHHHhcCC-------------ceEEEEC
Confidence 356777889999988888877777653 223456899999999999999999995532 3355442
Q ss_pred ccCCCCccCHHHHHHHHHHHHhc
Q psy9384 83 QSYDLATFSVQNFIQSLVEQFSS 105 (978)
Q Consensus 83 ~~~~~~~~~~~~~l~sl~~QL~~ 105 (978)
- . ++..+|++++.+|-.
T Consensus 319 p-r-----g~eElLr~LL~ALGV 335 (550)
T PTZ00202 319 V-R-----GTEDTLRSVVKALGV 335 (550)
T ss_pred C-C-----CHHHHHHHHHHHcCC
Confidence 2 2 569999999999996
No 144
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00043 Score=78.80 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=110.1
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|+|-+-+.+.+..|+...+ -...++++|++|+|||+++..+...+-..... ....+..--|.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~-----~~~~~~~~pCg------ 79 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD-----GQGGITATPCG------ 79 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcc-----cccCCCCCCCC------
Confidence 345666666777899998642 44568899999999999999998554311000 00000000010
Q ss_pred cCHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 90 FSVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
-+.-+.++.. .+|++.+. .. .+ ..-.+.+++++... .......+.-++|||-.|..
T Consensus 80 ------~C~~C~~i~~g~h~D~~el-----da---as--------~~~Vd~iReli~~~-~~~p~~g~~KV~IIDEvh~L 136 (618)
T PRK14951 80 ------VCQACRDIDSGRFVDYTEL-----DA---AS--------NRGVDEVQQLLEQA-VYKPVQGRFKVFMIDEVHML 136 (618)
T ss_pred ------ccHHHHHHHcCCCCceeec-----Cc---cc--------ccCHHHHHHHHHHH-HhCcccCCceEEEEEChhhC
Confidence 0111222221 22221110 00 00 00012233333221 11111123347888888887
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
..+. ...|+... ..-|..+++|+++......+....+.+..+++..+.. .+|..++...+...
T Consensus 137 s~~a-----------~NaLLKtL-EEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~----eei~~~L~~i~~~e- 199 (618)
T PRK14951 137 TNTA-----------FNAMLKTL-EEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAP----ETVLEHLTQVLAAE- 199 (618)
T ss_pred CHHH-----------HHHHHHhc-ccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCH----HHHHHHHHHHHHHc-
Confidence 6431 22233222 2345566777666332222333444566677755443 79999988776522
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
......+....|++.++|....+-..++.+
T Consensus 200 -----gi~ie~~AL~~La~~s~GslR~al~lLdq~ 229 (618)
T PRK14951 200 -----NVPAEPQALRLLARAARGSMRDALSLTDQA 229 (618)
T ss_pred -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122345677888999999988887766644
No 145
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00043 Score=77.19 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=65.7
Q ss_pred cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHH
Q psy9384 157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDM 236 (978)
Q Consensus 157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di 236 (978)
.-++|||..|....+. ...|.+.+. ..|+.+++|+++......+....+.+..+++..+. ..+|
T Consensus 118 ~KVvIIDEad~Lt~~A--------~NALLK~LE----Epp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls----~~ei 181 (535)
T PRK08451 118 FKIFIIDEVHMLTKEA--------FNALLKTLE----EPPSYVKFILATTDPLKLPATILSRTQHFRFKQIP----QNSI 181 (535)
T ss_pred eEEEEEECcccCCHHH--------HHHHHHHHh----hcCCceEEEEEECChhhCchHHHhhceeEEcCCCC----HHHH
Confidence 4578899888876321 223444444 33556777776644322122223345556665444 4899
Q ss_pred HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
..++...+.... ....++..+.|++.++|....+...++.+.
T Consensus 182 ~~~L~~Il~~EG------i~i~~~Al~~Ia~~s~GdlR~alnlLdqai 223 (535)
T PRK08451 182 ISHLKTILEKEG------VSYEPEALEILARSGNGSLRDTLTLLDQAI 223 (535)
T ss_pred HHHHHHHHHHcC------CCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999987776321 233456778999999999999988887654
No 146
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.77 E-value=9.9e-05 Score=67.58 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=34.3
Q ss_pred CcEEEEEeccccccccCC---CcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcc
Q psy9384 156 TSYFILVDSIDETHVTNK---KIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMF 216 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~ 216 (978)
.+.+++||.+|.+..... ......+.+.|...+.+.... ..++.+++++.... .+...+
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~-~i~~~l 119 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPD-KIDPAL 119 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGG-GSCHHH
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccc-cccceeEEeeCChh-hCCHhH
Confidence 368999999999976531 111122445555555544321 24578888887743 355443
No 147
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.76 E-value=0.00013 Score=74.01 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=34.9
Q ss_pred CCccc-cc-ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 9 SKKFF-CR-EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 9 ~~~f~-~r-~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
-+.|. |+ +.+...+++|.... ...+.++|+|+||+|||+|+..+..++
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGP-----VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhcc-----CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45566 33 45556778887632 145689999999999999999998543
No 148
>KOG3609|consensus
Probab=97.74 E-value=7.9e-05 Score=83.66 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=102.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccC--CCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEA--LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG 422 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g 422 (978)
-....|+..|+...|+..++.... .++|..|.-|+++|+.|+.+-+.+++++|++++... ..+|.+|+..|
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~ 99 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVG 99 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHH
Confidence 346789999999999999987555 678889999999999999999999999999987654 35899999999
Q ss_pred CHHHHHHHHhCCCCC----------CcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcc
Q psy9384 423 HSAVVKLLLQSGADV----------NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA 481 (978)
Q Consensus 423 ~~~iv~~Ll~~g~~~----------~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~ 481 (978)
..++|+.++.+-... ...-..+.||+.+||..+++|| +++|+++|+.+..
T Consensus 100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEi---------l~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 100 SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEI---------LQCLLTRGHCIPI 159 (822)
T ss_pred HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHH---------HHHHHHcCCCCCC
Confidence 999999999874322 1222346799999999999999 9999999987653
No 149
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00024 Score=79.56 Aligned_cols=210 Identities=13% Similarity=0.107 Sum_probs=106.2
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS 91 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~ 91 (978)
.+|-+-+.+.+..|+...+ -...+.|+|++|+|||+++..+...+...... ....+..--|.
T Consensus 18 VIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~-----~~~g~~~~PCG-------- 79 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGAD-----GEGGITAQPCG-------- 79 (700)
T ss_pred HcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcc-----ccccCCCCCCc--------
Confidence 3455556667889988642 34567889999999999999998665321000 00000000010
Q ss_pred HHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384 92 VQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV 170 (978)
Q Consensus 92 ~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~ 170 (978)
-+.-++++.. .++++.+ + .. . + ..-.+.+++++...... ....+.-++|||-.|....
T Consensus 80 ----~C~sC~~I~aG~hpDviE----I-dA-a--s--------~~gVDdIReLie~~~~~-P~~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 80 ----QCRACTEIDAGRFVDYIE----M-DA-A--S--------NRGVDEMAQLLDKAVYA-PTAGRFKVYMIDEVHMLTN 138 (700)
T ss_pred ----ccHHHHHHHcCCCCcceE----e-cc-c--c--------cCCHHHHHHHHHHHHhc-hhcCCceEEEEEChHhcCH
Confidence 0111222222 1122111 0 00 0 0 00012333333322211 1123345888998888864
Q ss_pred cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384 171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL 250 (978)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~ 250 (978)
+. ...|.+.+. .-|.++++|+++......+.-..+.+..+.+..+.. ++|..++...+...
T Consensus 139 ~A--------aNALLKTLE----EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~----eei~~~L~~Il~~E--- 199 (700)
T PRK12323 139 HA--------FNAMLKTLE----EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP----GHIVSHLDAILGEE--- 199 (700)
T ss_pred HH--------HHHHHHhhc----cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCCh----HHHHHHHHHHHHHc---
Confidence 31 122333332 334566777766544332333334566677755444 67777777655421
Q ss_pred HhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384 251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG 282 (978)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~ 282 (978)
......+..+.|.+.++|.+.-+-..++.
T Consensus 200 ---gi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 200 ---GIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11233456688899999998877665554
No 150
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.72 E-value=0.00035 Score=77.43 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=36.8
Q ss_pred CcccccccchHH---HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 10 KKFFCREWAFVK---LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 10 ~~f~~r~w~~~~---~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..|+|++.++.. +..|+.+. ...-+.|+|+||+|||+|+..+...
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899999876 89999864 3345788999999999999999754
No 151
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00039 Score=78.78 Aligned_cols=207 Identities=14% Similarity=0.085 Sum_probs=106.7
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.+.|-+-+...+..|+...+ -...+.++|+||+|||+++..+...+..... ...- -|.
T Consensus 17 divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-------~~~~---pcg------- 74 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETG-------VTAT---PCG------- 74 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-------CCCC---CCC-------
Confidence 34566777778899998642 3456789999999999999999866532100 0000 010
Q ss_pred CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
. +.-+.++.. ..+++.+. .. .. ....+.+++++... .......+.-++|||-.|...
T Consensus 75 ~-----C~~C~~i~~~~~~d~~ei-----~~---~~--------~~~vd~ir~l~~~~-~~~p~~~~~kVvIIDEad~ls 132 (527)
T PRK14969 75 V-----CSACLEIDSGRFVDLIEV-----DA---AS--------NTQVDAMRELLDNA-QYAPTRGRFKVYIIDEVHMLS 132 (527)
T ss_pred C-----CHHHHHHhcCCCCceeEe-----ec---cc--------cCCHHHHHHHHHHH-hhCcccCCceEEEEcCcccCC
Confidence 0 011122221 11211110 00 00 00012333333221 111112334588899988876
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
.+. ...|.+.+. ..|..+.+|+++.....-+....+.+..+.+..+. ..+|..|+...+...
T Consensus 133 ~~a--------~naLLK~LE----epp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~----~~~i~~~L~~il~~e-- 194 (527)
T PRK14969 133 KSA--------FNAMLKTLE----EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMP----PPLIVSHLQHILEQE-- 194 (527)
T ss_pred HHH--------HHHHHHHHh----CCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCC----HHHHHHHHHHHHHHc--
Confidence 431 123334443 34456666666633221121223345556665443 378998988777522
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
.....++..+.|++.++|....+-..++.+
T Consensus 195 ----gi~~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 195 ----NIPFDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122334566788889999887777666654
No 152
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.69 E-value=0.00073 Score=72.53 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=34.6
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.|.+-+.+.+..|+...+ -..++.++|+||+|||+++..+...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 34566666678899998532 3467777999999999999999754
No 153
>PRK09087 hypothetical protein; Validated
Probab=97.69 E-value=0.0005 Score=68.72 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=63.8
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc-------cchhhcccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS-------KSIKKMFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~-------~~i~~~~~~~~~i~l~~~~~~~ 231 (978)
.++||.+|-.... ...+...+..+... +..++++++.++ ++++.++.....+++...+
T Consensus 90 ~l~iDDi~~~~~~-----~~~lf~l~n~~~~~-------g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd--- 154 (226)
T PRK09087 90 PVLIEDIDAGGFD-----ETGLFHLINSVRQA-------GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPD--- 154 (226)
T ss_pred eEEEECCCCCCCC-----HHHHHHHHHHHHhC-------CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCC---
Confidence 6778988875321 22233333333321 235777776433 3455555555666775443
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.+++..++..+.... .-...+++.+-|++++.|.+.=+.-+++.|.
T Consensus 155 -~e~~~~iL~~~~~~~------~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 155 -DALLSQVIFKLFADR------QLYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 478888888777631 2346678899999999999887776666664
No 154
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00033 Score=78.74 Aligned_cols=205 Identities=14% Similarity=0.059 Sum_probs=104.6
Q ss_pred cccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCH
Q psy9384 13 FCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSV 92 (978)
Q Consensus 13 ~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~ 92 (978)
+|=+-+.+.+..|+...+ -...+.++|+||+|||+++..+...+-.... ...--|. .
T Consensus 19 vGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~----------~~~~pCg-------~- 75 (509)
T PRK14958 19 IGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKG----------VSANPCN-------D- 75 (509)
T ss_pred cCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCC----------CCcccCC-------C-
Confidence 455555567889998642 3456889999999999999999866532100 0000011 0
Q ss_pred HHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccccc
Q psy9384 93 QNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVT 171 (978)
Q Consensus 93 ~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~ 171 (978)
+..+.++.. .+|++.+. . . .+ ....+.+++++...- ......+.-++|||..|....+
T Consensus 76 ----C~~C~~i~~g~~~d~~ei-----d-a--as--------~~~v~~iR~l~~~~~-~~p~~~~~kV~iIDE~~~ls~~ 134 (509)
T PRK14958 76 ----CENCREIDEGRFPDLFEV-----D-A--AS--------RTKVEDTRELLDNIP-YAPTKGRFKVYLIDEVHMLSGH 134 (509)
T ss_pred ----CHHHHHHhcCCCceEEEE-----c-c--cc--------cCCHHHHHHHHHHHh-hccccCCcEEEEEEChHhcCHH
Confidence 111222211 11211110 0 0 00 000122333222211 1111123346778887776532
Q ss_pred CCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHH
Q psy9384 172 NKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLR 251 (978)
Q Consensus 172 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~ 251 (978)
. ...|.+.+. ..|+++++|+++.....-+....+.+..+++..+. ..+|..++...+....
T Consensus 135 a--------~naLLk~LE----epp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~----~~~i~~~l~~il~~eg--- 195 (509)
T PRK14958 135 S--------FNALLKTLE----EPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLP----PLQIAAHCQHLLKEEN--- 195 (509)
T ss_pred H--------HHHHHHHHh----ccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCC----HHHHHHHHHHHHHHcC---
Confidence 1 223444444 34567777776643222222333345556665444 3788888887776321
Q ss_pred hhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 252 VHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 252 ~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
....++..+.+++.++|...-+...++.+
T Consensus 196 ---i~~~~~al~~ia~~s~GslR~al~lLdq~ 224 (509)
T PRK14958 196 ---VEFENAALDLLARAANGSVRDALSLLDQS 224 (509)
T ss_pred ---CCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 22334567788899999988777777554
No 155
>PRK06893 DNA replication initiation factor; Validated
Probab=97.68 E-value=0.00021 Score=72.03 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=59.9
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc-------chhhcccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK-------SIKKMFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~-------~i~~~~~~~~~i~l~~~~~~~ 231 (978)
+++||-+|-..... ... ..+.+++...... ....+++++...+. ++..++.....+.+...+
T Consensus 94 lLilDDi~~~~~~~--~~~----~~l~~l~n~~~~~--~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd--- 162 (229)
T PRK06893 94 LVCLDDLQAVIGNE--EWE----LAIFDLFNRIKEQ--GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLT--- 162 (229)
T ss_pred EEEEeChhhhcCCh--HHH----HHHHHHHHHHHHc--CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCC---
Confidence 78888888764221 101 1233444333211 11123445544332 334443333345554333
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.++....++.+.... .-...+++.+-|++++.|.+.-+.-+++.|.
T Consensus 163 -~e~~~~iL~~~a~~~------~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 163 -DEQKIIVLQRNAYQR------GIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 367777776555411 2345678899999999999998888888774
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00037 Score=79.94 Aligned_cols=204 Identities=11% Similarity=0.121 Sum_probs=107.1
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS 91 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~ 91 (978)
..|-+.+.+.++.|+...+ -...+.++|+||+|||+++..+...+-. .........
T Consensus 20 IiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC-------------------~~~~~~~~p 75 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNC-------------------SHKTDLLEP 75 (725)
T ss_pred hcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcc-------------------cccCCCCCc
Confidence 4566667778999998642 3466789999999999999999855432 110000000
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccccc
Q psy9384 92 VQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVT 171 (978)
Q Consensus 92 ~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~ 171 (978)
+..+ ++ .....+.+.+. .. .+ ....+.+++++.. +.......+.-++|||-.|-...+
T Consensus 76 C~~C-~~----~~~~~~Dviei-----da---as--------n~~vd~IReLie~-~~~~P~~g~~KV~IIDEa~~LT~~ 133 (725)
T PRK07133 76 CQEC-IE----NVNNSLDIIEM-----DA---AS--------NNGVDEIRELIEN-VKNLPTQSKYKIYIIDEVHMLSKS 133 (725)
T ss_pred hhHH-HH----hhcCCCcEEEE-----ec---cc--------cCCHHHHHHHHHH-HHhchhcCCCEEEEEEChhhCCHH
Confidence 0000 01 01122221100 00 00 0001223333222 222222234457788887776532
Q ss_pred CCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchh-hcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384 172 NKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-KMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL 250 (978)
Q Consensus 172 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~ 250 (978)
-...|.+.+. ..|+.+.+|+++.... .+. ...+.+..+++..+.. .+|..++...+....
T Consensus 134 --------A~NALLKtLE----EPP~~tifILaTte~~-KLl~TI~SRcq~ieF~~L~~----eeI~~~L~~il~keg-- 194 (725)
T PRK07133 134 --------AFNALLKTLE----EPPKHVIFILATTEVH-KIPLTILSRVQRFNFRRISE----DEIVSRLEFILEKEN-- 194 (725)
T ss_pred --------HHHHHHHHhh----cCCCceEEEEEcCChh-hhhHHHHhhceeEEccCCCH----HHHHHHHHHHHHHcC--
Confidence 1223444443 2344556665553322 233 2334455667654443 789989887665321
Q ss_pred HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....+..+.++..++|....|...++.+.
T Consensus 195 ----I~id~eAl~~LA~lS~GslR~AlslLekl~ 224 (725)
T PRK07133 195 ----ISYEKNALKLIAKLSSGSLRDALSIAEQVS 224 (725)
T ss_pred ----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223345678899999999999888887764
No 157
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00084 Score=74.67 Aligned_cols=105 Identities=8% Similarity=0.077 Sum_probs=59.8
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhh
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIR 234 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~ 234 (978)
..-++|||-.|....+. ...|...+. ..|..+.+++++..+. .+.. ..+.+..+.+..... .
T Consensus 117 ~~kVvIIDE~h~Lt~~a--------~~~LLk~LE----~p~~~vv~Ilattn~~-kl~~~L~SR~~vv~f~~l~~----~ 179 (472)
T PRK14962 117 KYKVYIIDEVHMLTKEA--------FNALLKTLE----EPPSHVVFVLATTNLE-KVPPTIISRCQVIEFRNISD----E 179 (472)
T ss_pred CeEEEEEEChHHhHHHH--------HHHHHHHHH----hCCCcEEEEEEeCChH-hhhHHHhcCcEEEEECCccH----H
Confidence 34588898888775321 122333333 2334555555443222 2333 333455566654443 6
Q ss_pred HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
|+..++...+... .....++..+.|+++++|...-+-..++.+
T Consensus 180 el~~~L~~i~~~e------gi~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 180 LIIKRLQEVAEAE------GIEIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred HHHHHHHHHHHHc------CCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7888887766521 123456678889999999987766555554
No 158
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00098 Score=71.42 Aligned_cols=212 Identities=13% Similarity=0.147 Sum_probs=117.7
Q ss_pred cccccccchHH----HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384 11 KFFCREWAFVK----LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD 86 (978)
Q Consensus 11 ~f~~r~w~~~~----~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~ 86 (978)
.+.+|+--+++ +..|+.+.. .. -+.|+|+||+|||+.+..+.+++..++ +...+.|--|.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~-----p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~-------~~~~~~yINc~--- 81 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGER-----PS-NIIIYGPTGTGKTATVKFVMEELEESS-------ANVEVVYINCL--- 81 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCC-----Cc-cEEEECCCCCCHhHHHHHHHHHHHhhh-------ccCceEEEeee---
Confidence 36677665654 567777642 22 288899999999999999998876532 12225666655
Q ss_pred CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384 87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID 166 (978)
Q Consensus 87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD 166 (978)
.-.++..++..|+.++. ..|. .+. . .....+.+++.+. . ....+++|+|-+|
T Consensus 82 -~~~t~~~i~~~i~~~~~-~~p~-------------~g~-~-----~~~~~~~l~~~~~----~---~~~~~IvvLDEid 133 (366)
T COG1474 82 -ELRTPYQVLSKILNKLG-KVPL-------------TGD-S-----SLEILKRLYDNLS----K---KGKTVIVILDEVD 133 (366)
T ss_pred -eCCCHHHHHHHHHHHcC-CCCC-------------CCC-c-----hHHHHHHHHHHHH----h---cCCeEEEEEcchh
Confidence 44588889999999887 2222 000 0 0111122222222 2 4677999999999
Q ss_pred cccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc------cchhhcccCccccccccccchhhhhHHHHHH
Q psy9384 167 ETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS------KSIKKMFLGFHKLSLDDLRKSHVIRDMQQYI 240 (978)
Q Consensus 167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~------~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi 240 (978)
-.....+ +.|-.|++..... ..++-++..+.-.. +-+...+.+. .|....... +.|...+
T Consensus 134 ~L~~~~~--------~~LY~L~r~~~~~-~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a----~el~~Il 199 (366)
T COG1474 134 ALVDKDG--------EVLYSLLRAPGEN-KVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPPYTA----EELYDIL 199 (366)
T ss_pred hhccccc--------hHHHHHHhhcccc-ceeEEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCCCCH----HHHHHHH
Confidence 8864321 3455555543221 22333333332221 1122233222 245544443 6677777
Q ss_pred HHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 241 LLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
..|+..... .....+..-+++..++....|. |+.+++.++
T Consensus 200 ~~R~~~~~~-~~~~~~~vl~lia~~~a~~~GD---AR~aidilr 239 (366)
T COG1474 200 RERVEEGFS-AGVIDDDVLKLIAALVAAESGD---ARKAIDILR 239 (366)
T ss_pred HHHHHhhcc-CCCcCccHHHHHHHHHHHcCcc---HHHHHHHHH
Confidence 777764311 1122344556677777777775 666666665
No 159
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.65 E-value=0.00039 Score=74.67 Aligned_cols=55 Identities=27% Similarity=0.319 Sum_probs=39.3
Q ss_pred CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
|..-..|.||+-..+.+..++..... .....+.+.|+|+||+|||+|+..+...+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 33445689998888888777764210 01134568899999999999999998654
No 160
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00064 Score=77.75 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=61.9
Q ss_pred EEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHH
Q psy9384 158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDM 236 (978)
Q Consensus 158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di 236 (978)
=++|||-.|....+. ...|.+.+. .-|+.+.+|+++.... .+.. ..+.+..+++..+. .++|
T Consensus 129 KVvIIdEad~Lt~~a--------~naLLK~LE----ePp~~tv~IL~t~~~~-kLl~TI~SRc~~vef~~l~----~~ei 191 (620)
T PRK14954 129 RVYIIDEVHMLSTAA--------FNAFLKTLE----EPPPHAIFIFATTELH-KIPATIASRCQRFNFKRIP----LDEI 191 (620)
T ss_pred EEEEEeChhhcCHHH--------HHHHHHHHh----CCCCCeEEEEEeCChh-hhhHHHHhhceEEecCCCC----HHHH
Confidence 477888888876321 223444444 3344555555553322 2332 23345556665443 3789
Q ss_pred HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
..|+...+... .....++..+.|+++++|....+...++.+.
T Consensus 192 ~~~L~~i~~~e------gi~I~~eal~~La~~s~Gdlr~al~eLeKL~ 233 (620)
T PRK14954 192 QSQLQMICRAE------GIQIDADALQLIARKAQGSMRDAQSILDQVI 233 (620)
T ss_pred HHHHHHHHHHc------CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99988766522 1234566778899999999888887777654
No 161
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.63 E-value=0.00069 Score=74.24 Aligned_cols=207 Identities=13% Similarity=0.136 Sum_probs=105.4
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
...|.+-+.+.+++|+...+ -...+.++|+||+|||+++..+...+..... ...-++..|..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~-------~~~~~c~~c~~------ 76 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNG-------PDGEPCNECES------ 76 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCCCHH------
Confidence 45677777788999998632 3457889999999999999999877643210 00011112211
Q ss_pred CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
. .++.. .++.+... ... . ......+.+++.. +.......++-++|||-.|...
T Consensus 77 -c--------~~~~~~~~~~~~~~-----~~~---~--------~~~~~~~~~l~~~-~~~~p~~~~~~vviidea~~l~ 130 (355)
T TIGR02397 77 -C--------KEINSGSSLDVIEI-----DAA---S--------NNGVDDIREILDN-VKYAPSSGKYKVYIIDEVHMLS 130 (355)
T ss_pred -H--------HHHhcCCCCCEEEe-----ecc---c--------cCCHHHHHHHHHH-HhcCcccCCceEEEEeChhhcC
Confidence 0 11111 11111000 000 0 0000112222221 1111112234477888877775
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcc-cCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMF-LGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~-~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
... ...+.+.+. ..|+.+.+|+++.... .+...+ +.+..+++... ...++..|+..++.+.
T Consensus 131 ~~~--------~~~Ll~~le----~~~~~~~lIl~~~~~~-~l~~~l~sr~~~~~~~~~----~~~~l~~~l~~~~~~~- 192 (355)
T TIGR02397 131 KSA--------FNALLKTLE----EPPEHVVFILATTEPH-KIPATILSRCQRFDFKRI----PLEDIVERLKKILDKE- 192 (355)
T ss_pred HHH--------HHHHHHHHh----CCccceeEEEEeCCHH-HHHHHHHhheeEEEcCCC----CHHHHHHHHHHHHHHc-
Confidence 321 122333333 3345566666654322 122222 22334455322 3478888888877632
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++..+.+++.++|.+..+.-.++.+.
T Consensus 193 -----g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 193 -----GIKIEDEALELIARAADGSLRDALSLLDQLI 223 (355)
T ss_pred -----CCCCCHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 1234457788899999999888877776654
No 162
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.00072 Score=80.08 Aligned_cols=210 Identities=13% Similarity=0.041 Sum_probs=107.7
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.++|.+.+.+.++.|+...+ -...+.|+|.+|+|||+++..+...|.- ..... .
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C-------------------~~~~~--~ 69 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNC-------------------VEGPT--S 69 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCc-------------------ccCCC--C
Confidence 34577777778999998642 4467899999999999999999866532 11000 0
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384 91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV 170 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~ 170 (978)
.+-+..+| ++++....+..++.+ .+ .. ... ...+.++++.......-. ..+.-+||||-.|.+..
T Consensus 70 ~pCg~C~s-C~~~~~g~~~~~dv~-ei-da---as~--------~~Vd~iR~l~~~~~~~p~-~~~~KV~IIDEad~lt~ 134 (824)
T PRK07764 70 TPCGECDS-CVALAPGGPGSLDVT-EI-DA---ASH--------GGVDDARELRERAFFAPA-ESRYKIFIIDEAHMVTP 134 (824)
T ss_pred CCCcccHH-HHHHHcCCCCCCcEE-Ee-cc---ccc--------CCHHHHHHHHHHHHhchh-cCCceEEEEechhhcCH
Confidence 00000111 333332211111100 00 00 000 001122222111111111 12223667777777753
Q ss_pred cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
.. ...|.+++. ..|.++.+|+++..... |.. ..+.+..+.+..+. .++|..|+...+...
T Consensus 135 ~a--------~NaLLK~LE----EpP~~~~fIl~tt~~~k-Ll~TIrSRc~~v~F~~l~----~~~l~~~L~~il~~E-- 195 (824)
T PRK07764 135 QG--------FNALLKIVE----EPPEHLKFIFATTEPDK-VIGTIRSRTHHYPFRLVP----PEVMRGYLERICAQE-- 195 (824)
T ss_pred HH--------HHHHHHHHh----CCCCCeEEEEEeCChhh-hhHHHHhheeEEEeeCCC----HHHHHHHHHHHHHHc--
Confidence 31 234555555 44556677766633322 332 22344556664433 478999988766522
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
......+....|+..++|....+...++.|.
T Consensus 196 ----Gv~id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 196 ----GVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223445667888999998887777777765
No 163
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.61 E-value=0.00097 Score=66.43 Aligned_cols=172 Identities=17% Similarity=0.160 Sum_probs=89.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHHh
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFST 116 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~ 116 (978)
...++|+|++|+|||.|+..+..... +..+...|.|+ +...+.+.++..+-... .+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~-------~~~~~~~v~y~----------~~~~f~~~~~~~~~~~~---~~---- 89 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQ-------KQHPGKRVVYL----------SAEEFIREFADALRDGE---IE---- 89 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH-------HHCTTS-EEEE----------EHHHHHHHHHHHHHTTS---HH----
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH-------hccccccceee----------cHHHHHHHHHHHHHccc---ch----
Confidence 34689999999999999999985532 11124445543 33344444444443321 11
Q ss_pred hhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCC
Q psy9384 117 IVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFP 196 (978)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 196 (978)
.+.+-+. . . =+++||.+|..... +.....+...+..+...
T Consensus 90 ----------------------~~~~~~~----~----~--DlL~iDDi~~l~~~--~~~q~~lf~l~n~~~~~------ 129 (219)
T PF00308_consen 90 ----------------------EFKDRLR----S----A--DLLIIDDIQFLAGK--QRTQEELFHLFNRLIES------ 129 (219)
T ss_dssp ----------------------HHHHHHC----T----S--SEEEEETGGGGTTH--HHHHHHHHHHHHHHHHT------
T ss_pred ----------------------hhhhhhh----c----C--CEEEEecchhhcCc--hHHHHHHHHHHHHHHhh------
Confidence 1111111 1 1 28999999998642 21233334444443332
Q ss_pred Cceeeeeeecccccchh-------hcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhc
Q psy9384 197 PWLFLFCTVRRQSKSIK-------KMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKS 269 (978)
Q Consensus 197 ~~~~~~~~sr~~~~~i~-------~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a 269 (978)
+.++|++|+..+..+. .+|.....+.+... ..++....+..+... ..-...+++.+-|.++.
T Consensus 130 -~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~p----d~~~r~~il~~~a~~------~~~~l~~~v~~~l~~~~ 198 (219)
T PF00308_consen 130 -GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPP----DDEDRRRILQKKAKE------RGIELPEEVIEYLARRF 198 (219)
T ss_dssp -TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE--------HHHHHHHHHHHHHH------TT--S-HHHHHHHHHHT
T ss_pred -CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCC----CHHHHHHHHHHHHHH------hCCCCcHHHHHHHHHhh
Confidence 2367888866655443 22223334555432 235666666665552 11235567777777777
Q ss_pred hhhHHHHHHHHhhh
Q psy9384 270 NGCFLYLERVLDGI 283 (978)
Q Consensus 270 ~g~flw~~~~~~~l 283 (978)
.+...=+.-+++.|
T Consensus 199 ~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 199 RRDVRELEGALNRL 212 (219)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 77666555555554
No 164
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00069 Score=75.59 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=63.0
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc-ccCccccccccccchhhhh
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVIR 234 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~~ 234 (978)
..-++|||-.|....+. ...|.+.+. ..|+.+.+|+.+.... .+... .+.+..+++..+. ..
T Consensus 128 ~~KVvIIDEa~~Ls~~a--------~naLLk~LE----epp~~~vfI~aTte~~-kI~~tI~SRc~~~ef~~ls----~~ 190 (507)
T PRK06645 128 KHKIFIIDEVHMLSKGA--------FNALLKTLE----EPPPHIIFIFATTEVQ-KIPATIISRCQRYDLRRLS----FE 190 (507)
T ss_pred CcEEEEEEChhhcCHHH--------HHHHHHHHh----hcCCCEEEEEEeCChH-HhhHHHHhcceEEEccCCC----HH
Confidence 34578888888775321 223333333 3345666665553322 24333 2344556665444 37
Q ss_pred HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
++..++...+... .....++..+.|+++++|.+.-+-..++.+.
T Consensus 191 el~~~L~~i~~~e------gi~ie~eAL~~Ia~~s~GslR~al~~Ldkai 234 (507)
T PRK06645 191 EIFKLLEYITKQE------NLKTDIEALRIIAYKSEGSARDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999998888632 1233456678899999999888777776653
No 165
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.001 Score=74.69 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=59.7
Q ss_pred cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhH
Q psy9384 157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRD 235 (978)
Q Consensus 157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~D 235 (978)
.-++|||-.|..... .+..++.... ..+..+.+|+++.... .+.. ..+.+..+++.... ..|
T Consensus 117 ~kVVIIDEad~ls~~-----------a~naLLk~LE-ep~~~t~~Il~t~~~~-kl~~~I~SRc~~~~f~~ls----~~e 179 (504)
T PRK14963 117 RKVYILDEAHMMSKS-----------AFNALLKTLE-EPPEHVIFILATTEPE-KMPPTILSRTQHFRFRRLT----EEE 179 (504)
T ss_pred CeEEEEECccccCHH-----------HHHHHHHHHH-hCCCCEEEEEEcCChh-hCChHHhcceEEEEecCCC----HHH
Confidence 346777776654321 2223333221 2234455555553322 2332 22345556665444 479
Q ss_pred HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
+..|+...+... .....++..+.|++.++|...-+...++.+.
T Consensus 180 l~~~L~~i~~~e------gi~i~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 180 IAGKLRRLLEAE------GREAEPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999998877632 1223456778999999999888877777664
No 166
>KOG0521|consensus
Probab=97.57 E-value=7.5e-05 Score=86.82 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=36.4
Q ss_pred hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHH
Q psy9384 860 VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRL 934 (978)
Q Consensus 860 ~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~ 934 (978)
++++|+++|+++|..+ ..| .||||.+...|+...+..|+++|++++..+..|.+++++|....+-+++-+
T Consensus 671 ~~e~ll~~ga~vn~~d-~~g----~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l 740 (785)
T KOG0521|consen 671 AVELLLQNGADVNALD-SKG----RTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVLL 740 (785)
T ss_pred HHHHHHhcCCcchhhh-ccC----CCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccHHHH
Confidence 4444444444444444 444 555555555555555555555555555555555555555555444444443
No 167
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.57 E-value=0.00036 Score=75.44 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=47.1
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCC-ccCHHHHHHHH
Q psy9384 21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLA-TFSVQNFIQSL 99 (978)
Q Consensus 21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~-~~~~~~~l~sl 99 (978)
.+.+-+... ....+-+..|.|+=|||||+++..+.+.+.... ....+..+|-...... ..-...++..|
T Consensus 7 ~la~~I~~~---~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~-------~~~~~~i~fn~w~~~~~~~~~~~~~~~l 76 (325)
T PF07693_consen 7 ALAEIIKNP---DSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDN-------KEKYIFIYFNAWEYDGEDDLWASFLEEL 76 (325)
T ss_pred HHHHHHhcc---CCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-------ccceeeEEEccccCCCcchHHHHHHHHH
Confidence 344555543 224667899999999999999999998876420 0122222232222332 44456777777
Q ss_pred HHHHhcCC
Q psy9384 100 VEQFSSSE 107 (978)
Q Consensus 100 ~~QL~~~~ 107 (978)
..||....
T Consensus 77 ~~~l~~~~ 84 (325)
T PF07693_consen 77 FDQLEKHF 84 (325)
T ss_pred HHHHHHhc
Confidence 77777643
No 168
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.00049 Score=73.42 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=106.7
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
...+|-+-+.+.+..-+.+.+ -...+.|+|++|+|||+++..+...+..... +...... + ..+..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~------~~~~~~~-~---~~~~~ 87 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPD------PAEAPET-L---ADPDP 87 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCc------cccCccc-c---CCCCC
Confidence 344555555566777666431 3346888999999999999999977653110 0000000 0 01110
Q ss_pred cCHHHHHHHHHHHHhc-CCCchhHHHHhhhcchh-hHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc
Q psy9384 90 FSVQNFIQSLVEQFSS-SESPFSEAFSTIVEDES-IKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE 167 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE 167 (978)
. +..++++.. .+|++....+..-.... ..... ..++.+++.. .+.......+.-++|||-.|.
T Consensus 88 ~------c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I--------~vd~iR~l~~-~l~~~~~~g~~rVviIDeAd~ 152 (351)
T PRK09112 88 A------SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI--------TVDEIRRVGH-FLSQTSGDGNWRIVIIDPADD 152 (351)
T ss_pred C------CHHHHHHHcCCCCCEEEeecccccccccccccC--------CHHHHHHHHH-HhhhccccCCceEEEEEchhh
Confidence 1 123445543 34443221111000000 00000 0122332222 222222334556899999999
Q ss_pred ccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384 168 THVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
.+... ...|.+.+.. .|.+..+++++..+..-+....+.+..+.+..... +++..|+.+.-..
T Consensus 153 l~~~a--------anaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~----~~~~~~L~~~~~~- 215 (351)
T PRK09112 153 MNRNA--------ANAILKTLEE----PPARALFILISHSSGRLLPTIRSRCQPISLKPLDD----DELKKALSHLGSS- 215 (351)
T ss_pred cCHHH--------HHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhccEEEecCCCH----HHHHHHHHHhhcc-
Confidence 87542 1234444442 33445555555433222222223455667755444 7888888862110
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHH
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVL 280 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~ 280 (978)
....++....+.+.++|.+.-|.-.+
T Consensus 216 -------~~~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 216 -------QGSDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred -------cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11224556788899999988775443
No 169
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.00084 Score=72.10 Aligned_cols=222 Identities=13% Similarity=0.090 Sum_probs=112.7
Q ss_pred CCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeec--c
Q psy9384 5 TPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHF--C 82 (978)
Q Consensus 5 ~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff--~ 82 (978)
.|-+....+|-+.+.+.+.+.+.+.+ -..-+.++|++|+||++++-.++..+...... ... ++.. .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~------~~~-~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPP------GGD-GAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCC------CCC-ccccccc
Confidence 34455567788888888877777532 34568899999999999999998665431100 000 0000 0
Q ss_pred ccCCCCccCHHHHHHHHHHHHh-cCCCchhHHHHhhhcch-hhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEE
Q psy9384 83 QSYDLATFSVQNFIQSLVEQFS-SSESPFSEAFSTIVEDE-SIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFI 160 (978)
Q Consensus 83 ~~~~~~~~~~~~~l~sl~~QL~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i 160 (978)
.-..... +..++++. ..+|++.......-++. ...... ..++.+++... +.......++.++
T Consensus 82 ~l~~~~~-------c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I--------~VdqiR~l~~~-~~~~~~~~~~kVv 145 (365)
T PRK07471 82 SLAIDPD-------HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVI--------TVDEVRELISF-FGLTAAEGGWRVV 145 (365)
T ss_pred cccCCCC-------ChHHHHHHccCCCCeEEEecccccccccccccc--------cHHHHHHHHHH-hCcCcccCCCEEE
Confidence 0000000 12333333 24454322111000000 000000 01334433332 2222334556789
Q ss_pred EEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHH
Q psy9384 161 LVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYI 240 (978)
Q Consensus 161 viDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi 240 (978)
|||..|..+... ...|.+.+. ..|.+..+|++|........-..+.+..+.+...+ .+++..++
T Consensus 146 iIDead~m~~~a--------anaLLK~LE----epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~----~~~i~~~L 209 (365)
T PRK07471 146 IVDTADEMNANA--------ANALLKVLE----EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLA----PEDVIDAL 209 (365)
T ss_pred EEechHhcCHHH--------HHHHHHHHh----cCCCCeEEEEEECCchhchHHhhccceEEECCCCC----HHHHHHHH
Confidence 999999987542 224444444 33445556666654433222223445667775444 37888887
Q ss_pred HHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHH
Q psy9384 241 LLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVL 280 (978)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~ 280 (978)
.++... ..++....++..++|+++.|.-.+
T Consensus 210 ~~~~~~----------~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 210 AAAGPD----------LPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred HHhccc----------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 765421 111222677889999998775444
No 170
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.00096 Score=76.24 Aligned_cols=212 Identities=12% Similarity=0.086 Sum_probs=110.2
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
...|.+.+.+.+..++...+ -..-+.++|++|+|||+++..+...+....... .....+.-|..
T Consensus 25 dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~-----~~~~~~~~cg~------ 88 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDG-----DGGPTIDLCGV------ 88 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccc-----cCCCccccCcc------
Confidence 34566777778888888642 345688899999999999999997764321000 00000111110
Q ss_pred CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
+--++++.. .+|++.+. ++. + ..-.+.++.++.. +.......+.=++|||-.|...
T Consensus 89 ------c~~C~~i~~g~h~Dv~e~------~a~--s--------~~gvd~IReIie~-~~~~P~~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 89 ------GEHCQAIMEGRHVDVLEM------DAA--S--------HTGVDDIREIIES-VRYRPVSARYKVYIIDEVHMLS 145 (598)
T ss_pred ------cHHHHHHhcCCCCceEEe------ccc--c--------cCCHHHHHHHHHH-HHhchhcCCcEEEEEEChHhCC
Confidence 011123332 22332110 000 0 0001233333322 1111111233468888888876
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
.+. ...|.+.+. ..|+.+++|+++.....-+....+.+..+++..+.. +++..++...+...
T Consensus 146 ~~a--------~naLLKtLE----ePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~----~el~~~L~~i~~ke-- 207 (598)
T PRK09111 146 TAA--------FNALLKTLE----EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEA----DVLAAHLSRIAAKE-- 207 (598)
T ss_pred HHH--------HHHHHHHHH----hCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCH----HHHHHHHHHHHHHc--
Confidence 321 223444444 334566666665322222222333455566654443 78888888776522
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
......+..+.|+..++|....+...++.+
T Consensus 208 ----gi~i~~eAl~lIa~~a~Gdlr~al~~Ldkl 237 (598)
T PRK09111 208 ----GVEVEDEALALIARAAEGSVRDGLSLLDQA 237 (598)
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 223445677888999999988887777665
No 171
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.001 Score=76.50 Aligned_cols=208 Identities=10% Similarity=0.114 Sum_probs=107.1
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..+.|-+.+.+.+..|+...+ -...+.++|+||+|||+++..+...+-..... . .. .+-.|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~---~-~~---~c~~c------- 76 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGL---T-AE---PCNVC------- 76 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC---C-CC---CCCcc-------
Confidence 345677777778999998642 34567889999999999999998665321100 0 00 00000
Q ss_pred cCHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 90 FSVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
..+.++.. ..+++.+. ... + ....+..+.++.. +.......+.=++|||-.|..
T Consensus 77 --------~~c~~i~~g~~~d~~ei-----d~~---s--------~~~v~~ir~l~~~-~~~~p~~~~~KVvIIdev~~L 131 (576)
T PRK14965 77 --------PPCVEITEGRSVDVFEI-----DGA---S--------NTGVDDIRELREN-VKYLPSRSRYKIFIIDEVHML 131 (576)
T ss_pred --------HHHHHHhcCCCCCeeee-----ecc---C--------ccCHHHHHHHHHH-HHhccccCCceEEEEEChhhC
Confidence 11111111 11111100 000 0 0000112222211 111111122336778888877
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
..+. ...|.+.+. ..|+++.+|+++.... .|.. ..+.+..+++..+. ..+|..++...+.+.
T Consensus 132 t~~a--------~naLLk~LE----epp~~~~fIl~t~~~~-kl~~tI~SRc~~~~f~~l~----~~~i~~~L~~i~~~e 194 (576)
T PRK14965 132 STNA--------FNALLKTLE----EPPPHVKFIFATTEPH-KVPITILSRCQRFDFRRIP----LQKIVDRLRYIADQE 194 (576)
T ss_pred CHHH--------HHHHHHHHH----cCCCCeEEEEEeCChh-hhhHHHHHhhhhhhcCCCC----HHHHHHHHHHHHHHh
Confidence 6321 223444444 3345666666553322 2332 23345556665443 378888887766522
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++....|+.+++|....+...++.+.
T Consensus 195 ------gi~i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 195 ------GISISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred ------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1234456778899999999988887777653
No 172
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.56 E-value=0.00091 Score=70.85 Aligned_cols=198 Identities=21% Similarity=0.248 Sum_probs=108.3
Q ss_pred cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHH-HHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHH
Q psy9384 17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLC-KEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNF 95 (978)
Q Consensus 17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~-~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~ 95 (978)
-..+.++.||... .+.+..|+|+.||||+-|+ .++... +..+.|.=|+.-.. .++-..+
T Consensus 3 e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~-------------r~~vL~IDC~~i~~-ar~D~~~ 62 (431)
T PF10443_consen 3 EAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKD-------------RKNVLVIDCDQIVK-ARGDAAF 62 (431)
T ss_pred hHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhC-------------CCCEEEEEChHhhh-ccChHHH
Confidence 3456789999974 5568999999999999998 666633 33378888885555 5667789
Q ss_pred HHHHHHHHhcCCCch--hHHHHhhhcchhhHhhcchh-hhhhCHHHHHHHhhhh---hhhcC------------------
Q psy9384 96 IQSLVEQFSSSESPF--SEAFSTIVEDESIKALLKSD-QLLQDSDEVFKKALIL---PLAQI------------------ 151 (978)
Q Consensus 96 l~sl~~QL~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~---~l~~~------------------ 151 (978)
+++++.|+.-. |.+ ...+-.+.+- ..++..... ..-.+...++..+|.. +|+.+
T Consensus 63 I~~lA~qvGY~-PvFsw~nSiss~IDL-a~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~ 140 (431)
T PF10443_consen 63 IKNLASQVGYF-PVFSWMNSISSFIDL-AVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEED 140 (431)
T ss_pred HHHHHHhcCCC-cchHHHHHHHHHHHH-HHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchh
Confidence 99999999864 321 1112122111 011100000 0012222333333332 22220
Q ss_pred ---CCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeee--cccccchhhccc--Ccccccc
Q psy9384 152 ---KHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTV--RRQSKSIKKMFL--GFHKLSL 224 (978)
Q Consensus 152 ---~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~s--r~~~~~i~~~~~--~~~~i~l 224 (978)
.++..+-+||||+...-... ..-+-+.|.+........--. ++|+.| .-....+.+.+. .+..|.|
T Consensus 141 yl~~hPe~~PVVVIdnF~~k~~~-----~~~iy~~laeWAa~Lv~~nIA--HVIFlT~dv~~~k~LskaLPn~vf~tI~L 213 (431)
T PF10443_consen 141 YLEAHPERRPVVVIDNFLHKAEE-----NDFIYDKLAEWAASLVQNNIA--HVIFLTDDVSYSKPLSKALPNRVFKTISL 213 (431)
T ss_pred hhhhCCccCCEEEEcchhccCcc-----cchHHHHHHHHHHHHHhcCcc--EEEEECCCCchhhhHHHhCCCCceeEEee
Confidence 11233569999999764322 222223344444333222222 344444 333334666664 3667777
Q ss_pred ccccchhhhhHHHHHHHHHhcCc
Q psy9384 225 DDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 225 ~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
.+... +--+.||..+|...
T Consensus 214 ~Das~----~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 214 SDASP----ESAKQYVLSQLDED 232 (431)
T ss_pred cCCCH----HHHHHHHHHHhccc
Confidence 55443 66789999999754
No 173
>PRK08727 hypothetical protein; Validated
Probab=97.56 E-value=0.0007 Score=68.39 Aligned_cols=107 Identities=12% Similarity=0.119 Sum_probs=62.1
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccch-------hhcccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSI-------KKMFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i-------~~~~~~~~~i~l~~~~~~~ 231 (978)
++|||-+|..... +... ..+.+++...... ...+|++|+..+..+ ..++.....+.+...+.
T Consensus 96 lLiIDDi~~l~~~--~~~~----~~lf~l~n~~~~~---~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~-- 164 (233)
T PRK08727 96 LVALDGLESIAGQ--REDE----VALFDFHNRARAA---GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDD-- 164 (233)
T ss_pred EEEEeCcccccCC--hHHH----HHHHHHHHHHHHc---CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCH--
Confidence 7889988876532 1111 2333444433211 235788887554433 33333344566654443
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
+++..++..+.... .-...+++.+-|++++.|.+.-+.-+++.+.
T Consensus 165 --e~~~~iL~~~a~~~------~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 165 --VARAAVLRERAQRR------GLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred --HHHHHHHHHHHHHc------CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67777777654421 1245567889999999999888877777664
No 174
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00082 Score=77.73 Aligned_cols=209 Identities=11% Similarity=0.105 Sum_probs=104.5
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.+.|-+-+.+.+..|+.+.+ -...++|+|+||+|||+++..+...+.. ....+...
T Consensus 17 eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c-------------------~~~~~~~~ 72 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNC-------------------TTNDPKGR 72 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcC-------------------CCCCCCCC
Confidence 34555666667888888632 3456789999999999999999865431 11000000
Q ss_pred CHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 91 SVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.+ + .+..++++... ++++.+. .. . ... ..+.++.++. .+.........-+||||..|...
T Consensus 73 ~c-~-~c~~c~~i~~~~~~d~~~i-----~~-~--~~~--------~vd~ir~ii~-~~~~~p~~~~~kVvIIDEa~~L~ 133 (585)
T PRK14950 73 PC-G-TCEMCRAIAEGSAVDVIEM-----DA-A--SHT--------SVDDAREIIE-RVQFRPALARYKVYIIDEVHMLS 133 (585)
T ss_pred CC-c-cCHHHHHHhcCCCCeEEEE-----ec-c--ccC--------CHHHHHHHHH-HHhhCcccCCeEEEEEeChHhCC
Confidence 00 0 12233333332 1221110 00 0 000 0112222221 11121112344588999988876
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
.+. ...|.+.+. ..|..+.+|+++......+....+.+..+.+.... ..++..++.......
T Consensus 134 ~~a--------~naLLk~LE----epp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~----~~el~~~L~~~a~~e-- 195 (585)
T PRK14950 134 TAA--------FNALLKTLE----EPPPHAIFILATTEVHKVPATILSRCQRFDFHRHS----VADMAAHLRKIAAAE-- 195 (585)
T ss_pred HHH--------HHHHHHHHh----cCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCC----HHHHHHHHHHHHHHc--
Confidence 321 223344443 22345555555533221122222334445554333 367777777655421
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
......+..+.|+..++|....+.-.++.+.
T Consensus 196 ----gl~i~~eal~~La~~s~Gdlr~al~~LekL~ 226 (585)
T PRK14950 196 ----GINLEPGALEAIARAATGSMRDAENLLQQLA 226 (585)
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223456778899999999888887777664
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00087 Score=77.22 Aligned_cols=209 Identities=14% Similarity=0.114 Sum_probs=104.7
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS 91 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~ 91 (978)
..|.+-+...++.|+...+ -..-+.++|+||+|||+++..+...+... ........
T Consensus 18 liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-------------------~~~~~~~~ 73 (620)
T PRK14948 18 LVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-------------------NSDKPTPE 73 (620)
T ss_pred ccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-------------------CcCCCCCC
Confidence 3455555667888988642 23467899999999999999998665321 00000000
Q ss_pred HHHHHHHHHHHHhcCC-CchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384 92 VQNFIQSLVEQFSSSE-SPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV 170 (978)
Q Consensus 92 ~~~~l~sl~~QL~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~ 170 (978)
+-+ -+..++++.... +++.+. . .. . ....+.+++++... .......+.-++|||-.|.+..
T Consensus 74 ~Cg-~C~~C~~i~~g~h~D~~ei-----~-~~--~--------~~~vd~IReii~~a-~~~p~~~~~KViIIDEad~Lt~ 135 (620)
T PRK14948 74 PCG-KCELCRAIAAGNALDVIEI-----D-AA--S--------NTGVDNIRELIERA-QFAPVQARWKVYVIDECHMLST 135 (620)
T ss_pred CCc-ccHHHHHHhcCCCccEEEE-----e-cc--c--------cCCHHHHHHHHHHH-hhChhcCCceEEEEECccccCH
Confidence 000 133444454321 211110 0 00 0 00012333333221 1111112345888998888763
Q ss_pred cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384 171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL 250 (978)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~ 250 (978)
+. ...|.+.+. .-|..+.+|+++.....-+....+.+..+++..+. ..++..++.....+.
T Consensus 136 ~a--------~naLLK~LE----ePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~----~~ei~~~L~~ia~ke--- 196 (620)
T PRK14948 136 AA--------FNALLKTLE----EPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIP----LEAMVQHLSEIAEKE--- 196 (620)
T ss_pred HH--------HHHHHHHHh----cCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCC----HHHHHHHHHHHHHHh---
Confidence 21 223444443 33445555555533222122222334445554333 267777766544421
Q ss_pred HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
......+....+++.++|....|.-.++.+.
T Consensus 197 ---gi~is~~al~~La~~s~G~lr~A~~lLekls 227 (620)
T PRK14948 197 ---SIEIEPEALTLVAQRSQGGLRDAESLLDQLS 227 (620)
T ss_pred ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223345678899999999888877777653
No 176
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0016 Score=73.99 Aligned_cols=211 Identities=13% Similarity=0.061 Sum_probs=107.3
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.++|-+.+.+.++.|+.+.+ -...+.++|++|+|||+++..++..+..... ...-.+-.|
T Consensus 14 eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-------~~~~pCg~C-------- 73 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQG-------PTATPCGVC-------- 73 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccC-------CCCCccccc--------
Confidence 45677777788999998642 3456889999999999999999866542100 000000011
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384 91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV 170 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~ 170 (978)
.-+.++.......++.+ .+ ...... . .+..+++.... .........-++|||-.|-...
T Consensus 74 -------~~C~~i~~~~~~~~dvi-ei-daas~~-------g----vd~iRel~~~~-~~~P~~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 74 -------ESCVALAPNGPGSIDVV-EL-DAASHG-------G----VDDTRELRDRA-FYAPAQSRYRIFIVDEAHMVTT 132 (584)
T ss_pred -------HHHHHhhcccCCCceEE-Ee-cccccc-------C----HHHHHHHHHHH-HhhhhcCCceEEEEECCCcCCH
Confidence 01222222111000000 00 000000 0 01111111111 1111112334778888777753
Q ss_pred cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384 171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL 250 (978)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~ 250 (978)
+. ...|.+.+. .-|.++.+|+++......+....+.+..+++..+.. .||..|+...+...
T Consensus 133 ~A--------~NALLK~LE----Epp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~----~~i~~~L~~i~~~e--- 193 (584)
T PRK14952 133 AG--------FNALLKIVE----EPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP----RTMRALIARICEQE--- 193 (584)
T ss_pred HH--------HHHHHHHHh----cCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCH----HHHHHHHHHHHHHc---
Confidence 21 223444444 345566777666333221222233455566654443 78888887666522
Q ss_pred HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++....+++.++|...-+-..++.+.
T Consensus 194 ---gi~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 194 ---GVVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223455677888999999888888887764
No 177
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0005 Score=78.58 Aligned_cols=206 Identities=12% Similarity=0.118 Sum_probs=105.9
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.+.|.+-+.+.++.|+...+ -+..+.++|++|+|||+++..+...+.... +.....+-.|.
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~-------~~~~~pC~~C~------- 77 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLN-------PPDGEPCNECE------- 77 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-------CCCCCCCCccH-------
Confidence 45677777788999998642 456778899999999999999986653211 00111111111
Q ss_pred CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
-+.++.. ..+++.+. . .. + ....+.+++++..+ .......+.-++|||-.|...
T Consensus 78 --------~C~~i~~g~~~dv~ei-----d-aa--s--------~~~vd~ir~i~~~v-~~~p~~~~~kViIIDE~~~Lt 132 (559)
T PRK05563 78 --------ICKAITNGSLMDVIEI-----D-AA--S--------NNGVDEIRDIRDKV-KYAPSEAKYKVYIIDEVHMLS 132 (559)
T ss_pred --------HHHHHhcCCCCCeEEe-----e-cc--c--------cCCHHHHHHHHHHH-hhCcccCCeEEEEEECcccCC
Confidence 1222221 12221110 0 00 0 00012233332221 112222344588899888875
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
.+. ...|.+.+. ..|.++.+|+++.... .+.. ..+.+..+++..+. ..+|..++...+...
T Consensus 133 ~~a--------~naLLKtLE----epp~~~ifIlatt~~~-ki~~tI~SRc~~~~f~~~~----~~ei~~~L~~i~~~e- 194 (559)
T PRK05563 133 TGA--------FNALLKTLE----EPPAHVIFILATTEPH-KIPATILSRCQRFDFKRIS----VEDIVERLKYILDKE- 194 (559)
T ss_pred HHH--------HHHHHHHhc----CCCCCeEEEEEeCChh-hCcHHHHhHheEEecCCCC----HHHHHHHHHHHHHHc-
Confidence 321 223333333 3355666665553322 2322 22334445554333 478888887766522
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
.-....+..+.++..++|...-|-..++.+
T Consensus 195 -----gi~i~~~al~~ia~~s~G~~R~al~~Ldq~ 224 (559)
T PRK05563 195 -----GIEYEDEALRLIARAAEGGMRDALSILDQA 224 (559)
T ss_pred -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122334667788889999888776666654
No 178
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0018 Score=71.95 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=63.3
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhh
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIR 234 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~ 234 (978)
.+-++|||..|....+. ...|.+.+. ..|+.+.+|+++.... .+.+ ..+.+..+++.... .+
T Consensus 121 ~~kvvIIdead~lt~~~--------~n~LLk~lE----ep~~~~~~Il~t~~~~-kl~~tI~sRc~~v~f~~l~----~~ 183 (451)
T PRK06305 121 RYKIYIIDEVHMLTKEA--------FNSLLKTLE----EPPQHVKFFLATTEIH-KIPGTILSRCQKMHLKRIP----EE 183 (451)
T ss_pred CCEEEEEecHHhhCHHH--------HHHHHHHhh----cCCCCceEEEEeCChH-hcchHHHHhceEEeCCCCC----HH
Confidence 34578999988876321 223444444 2344666666663322 2322 22344456664433 37
Q ss_pred HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
||..++...+... .....++..+.|+.+++|....+...++.+.
T Consensus 184 el~~~L~~~~~~e------g~~i~~~al~~L~~~s~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 184 TIIDKLALIAKQE------GIETSREALLPIARAAQGSLRDAESLYDYVV 227 (451)
T ss_pred HHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8888888765521 1224456778999999999988887777664
No 179
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.00018 Score=67.59 Aligned_cols=43 Identities=35% Similarity=0.380 Sum_probs=34.0
Q ss_pred ccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 14 CREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 14 ~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
||+-.++.+..++..+ ..+.+.|+|+||+|||+++..+...+.
T Consensus 2 ~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 2 GQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred chHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4555667777777653 456889999999999999999997754
No 180
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0019 Score=68.85 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=36.4
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..|-+.+.+.+..|+.+.+ -+..+.++|++|+|||+++..++..+.
T Consensus 6 i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred ccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 3466667788999998643 456788999999999999999986653
No 181
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.45 E-value=0.00091 Score=74.24 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
.+.++|+|+||||||++++.+..++..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 456899999999999999999987754
No 182
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0026 Score=71.25 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=36.6
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.|-+.+...++.|+...+ -...+.++|+||+|||+++..+...+-
T Consensus 17 diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566777778999998642 446678899999999999999986653
No 183
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0013 Score=74.35 Aligned_cols=106 Identities=8% Similarity=0.044 Sum_probs=59.8
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD 235 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D 235 (978)
..-+||||-.|....+. ...|.+.+. ..+..+.+|+++...........+.+..+++..+. .++
T Consensus 119 ~~kVIIIDEad~Lt~~a--------~naLLk~LE----EP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs----~~e 182 (624)
T PRK14959 119 RYKVFIIDEAHMLTREA--------FNALLKTLE----EPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLS----EAG 182 (624)
T ss_pred CceEEEEEChHhCCHHH--------HHHHHHHhh----ccCCCEEEEEecCChhhhhHHHHhhhhccccCCCC----HHH
Confidence 44578888888775321 223334443 22345555555533222122222344556665444 378
Q ss_pred HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
|..++...+... ......+..+.|++.++|...++--.++.+
T Consensus 183 L~~~L~~il~~e------gi~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 183 LEAHLTKVLGRE------GVDYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888887654421 122445678889999999988887777654
No 184
>KOG0521|consensus
Probab=97.41 E-value=0.00014 Score=84.52 Aligned_cols=84 Identities=37% Similarity=0.526 Sum_probs=79.7
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455 (978)
Q Consensus 376 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 455 (978)
..|.|+||.|+..|..-++++|++.|+++|..|..|++|+|.+...|+...+..|+++|++.+..+..+.+|+++|....
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~ 733 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA 733 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred Ccee
Q psy9384 456 HLEV 459 (978)
Q Consensus 456 ~~~i 459 (978)
+.++
T Consensus 734 ~~d~ 737 (785)
T KOG0521|consen 734 NADI 737 (785)
T ss_pred cccH
Confidence 6665
No 185
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.40 E-value=0.002 Score=75.46 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=33.9
Q ss_pred cccccccchH---HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 11 KFFCREWAFV---KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 11 ~f~~r~w~~~---~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.|+|++-+.. .+.+.+... .-.-++|+|+||+|||+|+..+...
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4678888774 467777754 3345789999999999999999844
No 186
>KOG0734|consensus
Probab=97.36 E-value=0.00058 Score=72.68 Aligned_cols=51 Identities=24% Similarity=0.466 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCC---CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecccc
Q psy9384 20 VKLVHCLESKTNSKP---GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQS 84 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~---~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~ 84 (978)
+++.++|.+++-... .=.+...++|+||+|||.|++.|. +.-.|.|||+.-
T Consensus 317 eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvA--------------GEA~VPFF~~sG 370 (752)
T KOG0734|consen 317 EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVA--------------GEAGVPFFYASG 370 (752)
T ss_pred HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhh--------------cccCCCeEeccc
Confidence 457788887532100 014567899999999999999998 345688888763
No 187
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.35 E-value=0.0021 Score=71.39 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=58.0
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-------cccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-------MFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-------~~~~~~~i~l~~~~~~~ 231 (978)
+++||-+|..... +....++...+..+... +..++++|...+..+.. +|.....+.+...+
T Consensus 202 lLiiDDi~~l~~~--~~~~~~l~~~~n~~~~~-------~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd--- 269 (405)
T TIGR00362 202 LLLIDDIQFLAGK--ERTQEEFFHTFNALHEN-------GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPD--- 269 (405)
T ss_pred EEEEehhhhhcCC--HHHHHHHHHHHHHHHHC-------CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCC---
Confidence 7888999876532 11122233333333331 12466666654443332 22222234553322
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.++....+..++... .....+++.+.|+++..|.+.-+.-++..|.
T Consensus 270 -~~~r~~il~~~~~~~------~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~ 315 (405)
T TIGR00362 270 -LETRLAILQKKAEEE------GLELPDEVLEFIAKNIRSNVRELEGALNRLL 315 (405)
T ss_pred -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 345666666665531 2334567888899999988877776666664
No 188
>PRK06620 hypothetical protein; Validated
Probab=97.34 E-value=0.0031 Score=62.44 Aligned_cols=102 Identities=9% Similarity=0.149 Sum_probs=57.7
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccc-----hhhcccCccccccccccchhhh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKS-----IKKMFLGFHKLSLDDLRKSHVI 233 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~-----i~~~~~~~~~i~l~~~~~~~~~ 233 (978)
+++||-+|.... . .+..++....+. +..++++++++++. ++.++.....+++...+ .
T Consensus 88 ~lliDdi~~~~~-------~----~lf~l~N~~~e~---g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd----~ 149 (214)
T PRK06620 88 AFIIEDIENWQE-------P----ALLHIFNIINEK---QKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPD----D 149 (214)
T ss_pred EEEEeccccchH-------H----HHHHHHHHHHhc---CCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCC----H
Confidence 577888885431 1 344444433221 22577777665554 23333333345664333 2
Q ss_pred hHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 234 RDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 234 ~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
+++...+...... ..-...+++.+-|+++..|.+.=+.-+++.|.
T Consensus 150 ~~~~~~l~k~~~~------~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 150 ELIKILIFKHFSI------SSVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHHHHHHH------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4566666655442 11245678899999999999877776666663
No 189
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0033 Score=72.52 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=62.7
Q ss_pred EEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHH
Q psy9384 158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQ 237 (978)
Q Consensus 158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~ 237 (978)
=++|||..|....+. ...|.+.+. ..|....+|+++......+....+.+..+++..+.. .||.
T Consensus 123 KVvIIdea~~Ls~~a--------~naLLK~LE----epp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~----~ei~ 186 (614)
T PRK14971 123 KIYIIDEVHMLSQAA--------FNAFLKTLE----EPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQV----ADIV 186 (614)
T ss_pred EEEEEECcccCCHHH--------HHHHHHHHh----CCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCH----HHHH
Confidence 377888888875321 224444444 334455666555332222333334455566654443 7888
Q ss_pred HHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 238 QYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 238 ~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.++...+... .-....+..+.|+++++|....+...++.+.
T Consensus 187 ~~L~~ia~~e------gi~i~~~al~~La~~s~gdlr~al~~Lekl~ 227 (614)
T PRK14971 187 NHLQYVASKE------GITAEPEALNVIAQKADGGMRDALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8888665522 1223445678899999999988887777653
No 190
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.32 E-value=0.0018 Score=72.75 Aligned_cols=107 Identities=12% Similarity=0.064 Sum_probs=60.8
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccch-------hhcccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSI-------KKMFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i-------~~~~~~~~~i~l~~~~~~~ 231 (978)
++|||-+|..... +....++...+..+.... ..++++|..++..+ ..+|.....+++...+
T Consensus 214 lLiiDDi~~l~~~--~~~~~~l~~~~n~l~~~~-------~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd--- 281 (450)
T PRK00149 214 VLLIDDIQFLAGK--ERTQEEFFHTFNALHEAG-------KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPD--- 281 (450)
T ss_pred EEEEehhhhhcCC--HHHHHHHHHHHHHHHHCC-------CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCC---
Confidence 7889999887532 111223334443433321 23666666554333 2233222345554322
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.++....++.+... ......+++++-|+++..|.+..+.-+++.|.
T Consensus 282 -~~~r~~il~~~~~~------~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~ 327 (450)
T PRK00149 282 -LETRIAILKKKAEE------EGIDLPDEVLEFIAKNITSNVRELEGALNRLI 327 (450)
T ss_pred -HHHHHHHHHHHHHH------cCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHH
Confidence 34555666655552 12345678899999999999998887877775
No 191
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0027 Score=70.32 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=63.0
Q ss_pred cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhH
Q psy9384 157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRD 235 (978)
Q Consensus 157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~D 235 (978)
.-++|||-.|....+. ...|.+.+. .-|+.+++|+++.... .+.. ..+.+..+++..+. .++
T Consensus 117 ~KVvIIDEah~Ls~~A--------~NaLLK~LE----ePp~~v~fIlatte~~-Kl~~tI~SRc~~~~f~~l~----~~e 179 (491)
T PRK14964 117 FKVYIIDEVHMLSNSA--------FNALLKTLE----EPAPHVKFILATTEVK-KIPVTIISRCQRFDLQKIP----TDK 179 (491)
T ss_pred ceEEEEeChHhCCHHH--------HHHHHHHHh----CCCCCeEEEEEeCChH-HHHHHHHHhheeeeccccc----HHH
Confidence 3478888888775321 223444444 3455677777663322 2332 23345556664433 378
Q ss_pred HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
+..++...+... .....++..+.|++.++|....+...++.+.
T Consensus 180 l~~~L~~ia~~E------gi~i~~eAL~lIa~~s~GslR~alslLdqli 222 (491)
T PRK14964 180 LVEHLVDIAKKE------NIEHDEESLKLIAENSSGSMRNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888887666522 2234456778899999999888777776654
No 192
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0031 Score=71.88 Aligned_cols=207 Identities=11% Similarity=0.108 Sum_probs=106.7
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
...|=+.+.+.++.|+.+.+ -...+.++|+||+|||+++..+...+-... +.....+-.|.
T Consensus 17 diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-------~~~~~pC~~C~------- 77 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVN-------GPTPMPCGECS------- 77 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcccc-------CCCCCCCccch-------
Confidence 34566777788999998642 446788999999999999999987654211 00000111111
Q ss_pred CHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 91 SVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
-++++... .+.+.+. ... + ....+.++.+..... ......+.-++|||-.|...
T Consensus 78 --------~C~~i~~~~~~dv~~i-----dga---s--------~~~vddIr~l~e~~~-~~p~~~~~KVvIIDEa~~Ls 132 (563)
T PRK06647 78 --------SCKSIDNDNSLDVIEI-----DGA---S--------NTSVQDVRQIKEEIM-FPPASSRYRVYIIDEVHMLS 132 (563)
T ss_pred --------HHHHHHcCCCCCeEEe-----cCc---c--------cCCHHHHHHHHHHHH-hchhcCCCEEEEEEChhhcC
Confidence 11222211 1111000 000 0 000112222221111 11111234477888888875
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc-ccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
.+. ...|.+.+. ..|+.+.+|+++.... .+... .+.+..+++..+.. +++..++.......
T Consensus 133 ~~a--------~naLLK~LE----epp~~~vfI~~tte~~-kL~~tI~SRc~~~~f~~l~~----~el~~~L~~i~~~e- 194 (563)
T PRK06647 133 NSA--------FNALLKTIE----EPPPYIVFIFATTEVH-KLPATIKSRCQHFNFRLLSL----EKIYNMLKKVCLED- 194 (563)
T ss_pred HHH--------HHHHHHhhc----cCCCCEEEEEecCChH-HhHHHHHHhceEEEecCCCH----HHHHHHHHHHHHHc-
Confidence 321 122333333 3455666666553322 23322 23344455544333 78888887666421
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++..+.|++.++|....+...++.+.
T Consensus 195 -----gi~id~eAl~lLa~~s~GdlR~alslLdkli 225 (563)
T PRK06647 195 -----QIKYEDEALKWIAYKSTGSVRDAYTLFDQVV 225 (563)
T ss_pred -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1234456778899999999999888887664
No 193
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.29 E-value=0.0028 Score=61.88 Aligned_cols=91 Identities=10% Similarity=0.113 Sum_probs=51.6
Q ss_pred CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc-ccCccccccccccchhhh
Q psy9384 155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVI 233 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~ 233 (978)
..+-++|||-.|...... ...|...+. ..|+...++++++... .+... .+....+++.... .
T Consensus 95 ~~~kviiide~~~l~~~~--------~~~Ll~~le----~~~~~~~~il~~~~~~-~l~~~i~sr~~~~~~~~~~----~ 157 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA--------ANALLKTLE----EPPPNTLFILITPSPE-KLLPTIRSRCQVLPFPPLS----E 157 (188)
T ss_pred CCeEEEEEechhhhCHHH--------HHHHHHHhc----CCCCCeEEEEEECChH-hChHHHHhhcEEeeCCCCC----H
Confidence 345688888888876321 223444443 3344556666665332 23332 2344456665433 4
Q ss_pred hHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHH
Q psy9384 234 RDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFL 274 (978)
Q Consensus 234 ~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~fl 274 (978)
.++..|+..+ . ..++..+.+++.++|...
T Consensus 158 ~~~~~~l~~~--g----------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 158 EALLQWLIRQ--G----------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHHHHHc--C----------CCHHHHHHHHHHcCCCcc
Confidence 7888888776 1 123557788888888753
No 194
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.004 Score=67.61 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=35.9
Q ss_pred ccccccchHHHHHHHhcCCCC----CCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 12 FFCREWAFVKLVHCLESKTNS----KPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~----~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..|-+.+.+.++.++...+.- ...-..-+.++|+||+|||+++..+...+.
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456777778888888864100 000234588999999999999999986543
No 195
>KOG0989|consensus
Probab=97.28 E-value=0.0021 Score=64.08 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=45.0
Q ss_pred CCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhH
Q psy9384 194 LFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCF 273 (978)
Q Consensus 194 ~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~f 273 (978)
..+..++++++..-....|....+.+..+....... .||..-++ .+... ..-..-.+....+++.|+|.-
T Consensus 155 ~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d----~~iv~rL~-~Ia~~-----E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 155 DFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKD----EDIVDRLE-KIASK-----EGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred ccccceEEEEEcCChhhCChHHHhhHHHhcCCCcch----HHHHHHHH-HHHHH-----hCCCCCHHHHHHHHHHcCCcH
Confidence 445555666555433333444444444455443332 23322111 11111 112334567889999999999
Q ss_pred HHHHHHHhhhhc
Q psy9384 274 LYLERVLDGISN 285 (978)
Q Consensus 274 lw~~~~~~~l~~ 285 (978)
.=|..+++.+..
T Consensus 225 R~Ait~Lqsls~ 236 (346)
T KOG0989|consen 225 RRAITTLQSLSL 236 (346)
T ss_pred HHHHHHHHHhhc
Confidence 999999998874
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0058 Score=64.76 Aligned_cols=197 Identities=10% Similarity=0.034 Sum_probs=98.9
Q ss_pred ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHH
Q psy9384 16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNF 95 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~ 95 (978)
-|+-+-+++|+.+.+ -..-+.++|++|+||++++..++..+.-... ...-+ |. ..
T Consensus 6 PWl~~~~~~~~~~~r-----~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~-------~~~~~---Cg-------~C--- 60 (328)
T PRK05707 6 PWQQSLWQQLAGRGR-----HPHAYLLHGPAGIGKRALAERLAAALLCEAP-------QGGGA---CG-------SC--- 60 (328)
T ss_pred CCcHHHHHHHHHCCC-----cceeeeeECCCCCCHHHHHHHHHHHHcCCCC-------CCCCC---CC-------CC---
Confidence 377778899988632 3456889999999999999999866542110 00000 00 00
Q ss_pred HHHHHHHHh-cCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCC
Q psy9384 96 IQSLVEQFS-SSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKK 174 (978)
Q Consensus 96 l~sl~~QL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~ 174 (978)
.-++.+. ..+|++... .+..... .-..++++++....-........+|+ |||..|....+.
T Consensus 61 --~sC~~~~~g~HPD~~~i------~~~~~~~-------~i~id~iR~l~~~~~~~~~~~~~kv~-iI~~a~~m~~~a-- 122 (328)
T PRK05707 61 --KGCQLLRAGSHPDNFVL------EPEEADK-------TIKVDQVRELVSFVVQTAQLGGRKVV-LIEPAEAMNRNA-- 122 (328)
T ss_pred --HHHHHHhcCCCCCEEEE------eccCCCC-------CCCHHHHHHHHHHHhhccccCCCeEE-EECChhhCCHHH--
Confidence 1111111 233432110 0000000 00013344433222211111234444 678888876432
Q ss_pred cCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhc
Q psy9384 175 IYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHM 254 (978)
Q Consensus 175 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~ 254 (978)
...|.+.+. .-|+++.+|++|..+..-+.-..+.+..+.+.... .+++..|+..+....
T Consensus 123 ------aNaLLK~LE----EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~----~~~~~~~L~~~~~~~------- 181 (328)
T PRK05707 123 ------ANALLKSLE----EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS----NEESLQWLQQALPES------- 181 (328)
T ss_pred ------HHHHHHHHh----CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC----HHHHHHHHHHhcccC-------
Confidence 223444444 33456677777755543333333455666664333 368888887654211
Q ss_pred CcChHHHHHHHHhhchhhHHHHHHH
Q psy9384 255 NRDTAEMLNQLHIKSNGCFLYLERV 279 (978)
Q Consensus 255 ~~~~~~i~~~l~~~a~g~flw~~~~ 279 (978)
.++-...++..++|.+.+|.-.
T Consensus 182 ---~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ---DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1222345677888988877544
No 197
>KOG0744|consensus
Probab=97.27 E-value=0.00056 Score=68.16 Aligned_cols=29 Identities=38% Similarity=0.538 Sum_probs=25.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
+.++++.++|+||+|||+|++.+.++|.-
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 35789999999999999999999988863
No 198
>KOG0727|consensus
Probab=97.24 E-value=0.00079 Score=64.34 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=34.3
Q ss_pred CCcEEEEEecccccccc---CCCcCCCcchhhHHHHHHhccCCC-CCceeeeeeecccc
Q psy9384 155 KTSYFILVDSIDETHVT---NKKIYSDKATCSIADLLARNHHLF-PPWLFLFCTVRRQS 209 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~---~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~sr~~~ 209 (978)
..+-+|+||-+|-+... .+.-.-+++-+.|.+++.+....- ..+|++|..+.|..
T Consensus 247 napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 55678889988887431 111112345567777777664322 25899999987764
No 199
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.23 E-value=0.0023 Score=71.14 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=101.9
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHH
Q psy9384 21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLV 100 (978)
Q Consensus 21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~ 100 (978)
..++|...+. .....|+|+|++|+|||.|+..+...+.. ..++..+.|. ++..+++.+.
T Consensus 129 aa~~~a~~~~----~~~npl~i~G~~G~GKTHLl~Ai~~~l~~-------~~~~~~v~yv----------~~~~f~~~~~ 187 (450)
T PRK14087 129 AVQTVSKNPG----ISYNPLFIYGESGMGKTHLLKAAKNYIES-------NFSDLKVSYM----------SGDEFARKAV 187 (450)
T ss_pred HHHHHHhCcC----cccCceEEECCCCCcHHHHHHHHHHHHHH-------hCCCCeEEEE----------EHHHHHHHHH
Confidence 3456665431 12346999999999999999998855431 1123334332 2334555555
Q ss_pred HHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcc
Q psy9384 101 EQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKA 180 (978)
Q Consensus 101 ~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~ 180 (978)
..+-... +. .+.+.+.+ ...-++|||=++-.... +...
T Consensus 188 ~~l~~~~----~~-----------------------~~~~~~~~----------~~~dvLiIDDiq~l~~k--~~~~--- 225 (450)
T PRK14087 188 DILQKTH----KE-----------------------IEQFKNEI----------CQNDVLIIDDVQFLSYK--EKTN--- 225 (450)
T ss_pred HHHHHhh----hH-----------------------HHHHHHHh----------ccCCEEEEeccccccCC--HHHH---
Confidence 4443210 00 01111110 11237888888766421 1112
Q ss_pred hhhHHHHHHhccCCCCCceeeeeeecccccchh-------hcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhh
Q psy9384 181 TCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-------KMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVH 253 (978)
Q Consensus 181 ~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-------~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~ 253 (978)
+.+..++....... -.+|++|..++..+. .+|.....+.+... ..++...++..++.... .
T Consensus 226 -e~lf~l~N~~~~~~---k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~p----d~e~r~~iL~~~~~~~g----l 293 (450)
T PRK14087 226 -EIFFTIFNNFIEND---KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKL----DNKTATAIIKKEIKNQN----I 293 (450)
T ss_pred -HHHHHHHHHHHHcC---CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCc----CHHHHHHHHHHHHHhcC----C
Confidence 23444444332211 146777665543332 22322333445433 34789999998887421 1
Q ss_pred cCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 254 MNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 254 ~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....+++.+-|++.+.|...-+.-++..+.
T Consensus 294 ~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 294 KQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred CCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 1245678999999999999998888887764
No 200
>KOG2227|consensus
Probab=97.17 E-value=0.005 Score=65.14 Aligned_cols=81 Identities=19% Similarity=0.319 Sum_probs=55.5
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
.+-.|||-=++.+++|+..+= ..+.++=|+++|-||+|||.+++.+.+++...+ ....+.|.-|-.-.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-------~~~~~v~inc~sl~--- 217 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-------KSPVTVYINCTSLT--- 217 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-------ccceeEEEeecccc---
Confidence 456788888888888888763 334567799999999999999999998876432 22345666665333
Q ss_pred cCHHHHHHHHHHHH
Q psy9384 90 FSVQNFIQSLVEQF 103 (978)
Q Consensus 90 ~~~~~~l~sl~~QL 103 (978)
.+..++..+..-+
T Consensus 218 -~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 218 -EASAIFKKIFSSL 230 (529)
T ss_pred -chHHHHHHHHHHH
Confidence 4444555444444
No 201
>KOG0739|consensus
Probab=97.14 E-value=0.0012 Score=64.99 Aligned_cols=21 Identities=43% Similarity=0.824 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHh
Q psy9384 38 GGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii 58 (978)
+...++|+||+|||.|++.|.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVA 187 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVA 187 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHH
Confidence 567899999999999999998
No 202
>KOG1514|consensus
Probab=97.13 E-value=0.0054 Score=68.23 Aligned_cols=191 Identities=18% Similarity=0.256 Sum_probs=111.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
+..-||+--|+++..+++..=. ..+..+.++|+|-||+|||.....|++.|++++.+. .-..+.|.+.+ .-.-
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~----e~p~f~yveIN--gm~l 468 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQK----ELPKFDYVEIN--GLRL 468 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhc----CCCCccEEEEc--ceee
Confidence 4566899888887777765311 123556899999999999999999999988755443 13345555544 4455
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.++..++..|..+|-.....-... ++.+..-|. .-....++.+++||-||-.=
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~a-----------------------l~~L~~~f~----~~k~~~~~~VvLiDElD~Lv 521 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAA-----------------------LEALNFRFT----VPKPKRSTTVVLIDELDILV 521 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHH-----------------------HHHHHHhhc----cCCCCCCCEEEEeccHHHHh
Confidence 668888888888887653221111 111111111 12334667999999999975
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhccc-------CccccccccccchhhhhHHHHHHHH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFL-------GFHKLSLDDLRKSHVIRDMQQYILL 242 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~-------~~~~i~l~~~~~~~~~~Di~~yi~~ 242 (978)
..+ .+ .+-.++. ++..-.+.+.+|+++-.- .-.++.+. ++..|....++ ..-++.-|..
T Consensus 522 tr~-----Qd---VlYn~fd-Wpt~~~sKLvvi~IaNTm-dlPEr~l~nrvsSRlg~tRi~F~pYt----h~qLq~Ii~~ 587 (767)
T KOG1514|consen 522 TRS-----QD---VLYNIFD-WPTLKNSKLVVIAIANTM-DLPERLLMNRVSSRLGLTRICFQPYT----HEQLQEIISA 587 (767)
T ss_pred ccc-----HH---HHHHHhc-CCcCCCCceEEEEecccc-cCHHHHhccchhhhccceeeecCCCC----HHHHHHHHHH
Confidence 432 11 2333332 332222445555555432 22334443 23444444333 4667777777
Q ss_pred HhcCch
Q psy9384 243 RLASEE 248 (978)
Q Consensus 243 ~l~~~~ 248 (978)
||..+.
T Consensus 588 RL~~~~ 593 (767)
T KOG1514|consen 588 RLKGLD 593 (767)
T ss_pred hhcchh
Confidence 877663
No 203
>KOG0520|consensus
Probab=97.12 E-value=0.00057 Score=78.87 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=95.2
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHH
Q psy9384 339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL-EAGANINHTDCEGWTPLRS 417 (978)
Q Consensus 339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~ 417 (978)
....|.+.+|.++..+..-++..+++. .+......|..|...+|. |..++.++.-+++ =.|..++.+|..|+||||+
T Consensus 570 ~~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w 647 (975)
T KOG0520|consen 570 VNFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW 647 (975)
T ss_pred CCCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence 345677999999999999999999984 255555667778888888 5555556555555 4678899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHhcCCcee
Q psy9384 418 ASWGGHSAVVKLLLQSGADVN------CSDMGGRTALRAAAWGGHLEV 459 (978)
Q Consensus 418 A~~~g~~~iv~~Ll~~g~~~~------~~~~~~~t~l~~A~~~~~~~i 459 (978)
|+.+|+..++..|++.|++.. .....|.|+-..|..+|+..+
T Consensus 648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gi 695 (975)
T KOG0520|consen 648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGI 695 (975)
T ss_pred HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccch
Confidence 999999999999998876533 334458899999999999998
No 204
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.12 E-value=0.0027 Score=65.59 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..-+.++|+||+|||+++..+...+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998654
No 205
>PRK05642 DNA replication initiation factor; Validated
Probab=97.12 E-value=0.0041 Score=62.81 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=58.8
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-------cccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-------MFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-------~~~~~~~i~l~~~~~~~ 231 (978)
+++||-++-.... +... +.+.+++..... .+..++++++..++.+.. ++.....+.++..+
T Consensus 100 ~LiiDDi~~~~~~--~~~~----~~Lf~l~n~~~~---~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~--- 167 (234)
T PRK05642 100 LVCLDDLDVIAGK--ADWE----EALFHLFNRLRD---SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLS--- 167 (234)
T ss_pred EEEEechhhhcCC--hHHH----HHHHHHHHHHHh---cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCC---
Confidence 6788988865421 1111 234444443321 123577777655443332 22222344454323
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.++....+..+.... .-...+++.+-|+++..|.+.-+.-+++.|.
T Consensus 168 -~e~~~~il~~ka~~~------~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 168 -DEDKLRALQLRASRR------GLHLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 245666665444321 1234568899999999999888888888774
No 206
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.10 E-value=0.0047 Score=68.88 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.+.++|+||||||.+++.+...+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34668899999999999999998543
No 207
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.08 E-value=0.0059 Score=67.91 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=26.6
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+|..++ +.-.-|+|+|+||+|||.|+..+..++.
T Consensus 120 ~~~~~~~~-----~~~n~l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 120 ALEVAKNP-----GRYNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred HHHHHhCc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 45666543 2234599999999999999999986643
No 208
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.06 E-value=0.0053 Score=59.32 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=34.2
Q ss_pred CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.=..|+|-+-+....+-+++.-.. ....-.-+.++|+||+|||||+..|..++.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccC
Confidence 335688888888876666553100 000123488999999999999999986653
No 209
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=97.06 E-value=0.00074 Score=81.65 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhh
Q psy9384 155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIR 234 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~ 234 (978)
..++.+++|||||..... ....++.+..++..- | ...+|+++|+.. ....+.++...++.......+..
T Consensus 304 ~g~~llLlDGlDe~~~~~----~~~~~~~i~~f~~~~----~-~~~~iltcR~~~--~~~~~~~f~~~ei~~~~~~~i~~ 372 (824)
T COG5635 304 TGKLLLLLDGLDELEPKN----QRALIREINKFLQEY----P-DAQVLLTCRPDT--YKEEFKGFAVFEIYKFLDLQINQ 372 (824)
T ss_pred ccchhhHhhccchhhhhh----HHHHHHHHHHHhhhc----c-CCeEEEEeccch--hhhhhhhhhhccchhhhHHHHHH
Confidence 466899999999998543 333445566666533 2 356788887754 33333345555554444434444
Q ss_pred HHH-HHHHHHhcCchHHHhhcCcChHHHHHHHHhhc-------hhhHHHHHHHHhhhhccceeeccccccccchhHHHHH
Q psy9384 235 DMQ-QYILLRLASEESLRVHMNRDTAEMLNQLHIKS-------NGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLW 306 (978)
Q Consensus 235 Di~-~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a-------~g~flw~~~~~~~l~~~~~~~~~l~~lp~~l~~~y~~ 306 (978)
.+. .+....+.... ...+........++...- ..+++-+.+.|..- +....+|.....+|..
T Consensus 373 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~-------~~~~~lP~~~~~ly~~ 442 (824)
T COG5635 373 FILYQWLDAFIEDWF---GDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIW-------QAQGDLPESRAELYEQ 442 (824)
T ss_pred HHHHHHHHHHHHhhh---cccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhh-------hHHhhCCCCcHHHHHH
Confidence 443 33222222110 000011001111111111 22333333333222 2456899999999999
Q ss_pred HHhhcccchh
Q psy9384 307 LSQRLLSTKQ 316 (978)
Q Consensus 307 ~~~~~~~~~~ 316 (978)
....+....+
T Consensus 443 ~~~~~~~~~d 452 (824)
T COG5635 443 AVDALLGRED 452 (824)
T ss_pred HHHHHHhccc
Confidence 9998866543
No 210
>KOG0520|consensus
Probab=97.04 E-value=0.00075 Score=77.92 Aligned_cols=122 Identities=22% Similarity=0.222 Sum_probs=58.4
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCcCCCCCCcHHHHHHh
Q psy9384 376 KHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLL-QSGADVNCSDMGGRTALRAAAW 453 (978)
Q Consensus 376 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~~~~~~t~l~~A~~ 453 (978)
..|++.+|.++..++..+++.+++. |......|..|...+|+|+ .++.+..-+|+ -.|..++.+|..|+||||+|+.
T Consensus 572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~ 650 (975)
T KOG0520|consen 572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF 650 (975)
T ss_pred CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhh
Confidence 3455555555555555555555553 4333444444444555522 23333322222 2344555555555555555555
Q ss_pred cCCceeeeeccchHHHHHHHHcCCCCcc------cCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNA------ADSEGRTALIASAYMGHADIVSSILE 507 (978)
Q Consensus 454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~------~~~~~~t~L~~A~~~~~~~~v~~Ll~ 507 (978)
.|+..+ +..|++.|++... ....|.|+-..|-.+|+..+..+|-+
T Consensus 651 ~G~e~l---------~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse 701 (975)
T KOG0520|consen 651 RGREKL---------VASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE 701 (975)
T ss_pred cCHHHH---------HHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence 555555 5555554433221 12234455555555555555555443
No 211
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.04 E-value=0.0011 Score=79.44 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=35.6
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...|-+.+.+++.+|+.............++++|+||+|||+++..+...+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345666666777777653211122244589999999999999999998665
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.02 E-value=0.0029 Score=61.09 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+-..++|+||+|||++++.+.....
T Consensus 150 APknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccC
Confidence 456788999999999999999986543
No 213
>CHL00181 cbbX CbbX; Provisional
Probab=96.98 E-value=0.0087 Score=62.28 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..++++|+||+|||+++..+...+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999997543
No 214
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.94 E-value=0.0088 Score=62.31 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.-++++|+||+|||+++..+...+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999998877544
No 215
>KOG2028|consensus
Probab=96.93 E-value=0.015 Score=59.20 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=25.3
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+...+++. .-.-+.+.|+||+|||+|+..++...+
T Consensus 153 lrs~ieq~------~ipSmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 153 LRSLIEQN------RIPSMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred HHHHHHcC------CCCceEEecCCCCchHHHHHHHHhhcC
Confidence 45566653 333466679999999999999986644
No 216
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0018 Score=65.90 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=37.1
Q ss_pred CCCcEEEEEecccccccc---CCCcCCCcchhhHHHHHHhccCCCC-Cceeeeeeecccc
Q psy9384 154 PKTSYFILVDSIDETHVT---NKKIYSDKATCSIADLLARNHHLFP-PWLFLFCTVRRQS 209 (978)
Q Consensus 154 ~~~~~~iviDaLDE~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~sr~~~ 209 (978)
...+-+|+||-+|-+... +...--+++=+.+.+|+.+...--| .+|++|..+.|..
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 356789999999988542 1111123355677788887654334 5899999997764
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.82 E-value=0.0011 Score=69.42 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=36.5
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
|+|=+-.++++.+|+..........+++++|.|+||+|||+|+..+...+..
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4444555566667766532112335689999999999999999999977754
No 218
>KOG4658|consensus
Probab=96.82 E-value=0.028 Score=67.67 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=120.8
Q ss_pred cccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCH
Q psy9384 13 FCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSV 92 (978)
Q Consensus 13 ~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~ 92 (978)
+|.+-..++...+|-.+ +.+++-|+|..|.|||||++.+..+...- ...-..+++.+.+. .-+.
T Consensus 161 VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v------~~~Fd~~iWV~VSk----~f~~ 224 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEV------GNHFDGVIWVVVSK----EFTT 224 (889)
T ss_pred ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchh------cccCceEEEEEEcc----cccH
Confidence 78888889999999975 34899999999999999999999876420 00123344444332 4455
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc-cccc
Q psy9384 93 QNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE-THVT 171 (978)
Q Consensus 93 ~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE-~~~~ 171 (978)
..+-..++.-|....+..-+. ..+.....+...|. .+++.+|+|-+=+ .+
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~----------------------~~~~~~~~i~~~L~-----~krfllvLDDIW~~~d-- 275 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDK----------------------EEDELASKLLNLLE-----GKRFLLVLDDIWEEVD-- 275 (889)
T ss_pred HhHHHHHHHHhccCCcccchh----------------------hHHHHHHHHHHHhc-----cCceEEEEeccccccc--
Confidence 667777777666643321110 00233333343343 5789999997622 11
Q ss_pred CCCcCCCcchhhHHHHHHhccCCCCC---ceeeeeeecccccchhhc-ccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384 172 NKKIYSDKATCSIADLLARNHHLFPP---WLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 172 ~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
+..+- ..+|. +-++++|||... +... ......++++-... +|.-..+...+-..
T Consensus 276 ------------w~~I~----~~~p~~~~g~KvvlTTRs~~--V~~~~m~~~~~~~v~~L~~----~eaW~LF~~~v~~~ 333 (889)
T KOG4658|consen 276 ------------WDKIG----VPFPSRENGSKVVLTTRSEE--VCGRAMGVDYPIEVECLTP----EEAWDLFQKKVGPN 333 (889)
T ss_pred ------------HHhcC----CCCCCccCCeEEEEEeccHh--hhhccccCCccccccccCc----cccHHHHHHhhccc
Confidence 11111 13332 378889998864 4333 33344455544444 34444444333211
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhcc
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNG 286 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~ 286 (978)
. .......+++..++++++.|.+|=+...-..++..
T Consensus 334 ~---~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K 369 (889)
T KOG4658|consen 334 T---LGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACK 369 (889)
T ss_pred c---ccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCC
Confidence 1 00112267889999999999999887777777644
No 219
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.80 E-value=0.0022 Score=66.14 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.1
Q ss_pred ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
++++++...|+.. ++-++|.|+||+|||+|+..+..
T Consensus 8 ~~l~~~~l~~l~~--------g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 8 KRVTSRALRYLKS--------GYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHhc--------CCeEEEEcCCCCCHHHHHHHHHH
Confidence 3456678888884 35678999999999999999974
No 220
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.80 E-value=0.0082 Score=65.79 Aligned_cols=26 Identities=38% Similarity=0.685 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.+.|+|+||||||++++.+...+
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh
Confidence 34568899999999999999998543
No 221
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.79 E-value=0.015 Score=65.77 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=54.9
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccc-------hhhcccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKS-------IKKMFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~-------i~~~~~~~~~i~l~~~~~~~ 231 (978)
++|||-+|-.... +....++...+..+... +..+|++|.+.+.+ +..+|...-.++|..-+
T Consensus 380 LLlIDDIq~l~gk--e~tqeeLF~l~N~l~e~-------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD--- 447 (617)
T PRK14086 380 ILLVDDIQFLEDK--ESTQEEFFHTFNTLHNA-------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPE--- 447 (617)
T ss_pred EEEEehhccccCC--HHHHHHHHHHHHHHHhc-------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCC---
Confidence 6888888877532 11123333333333321 22477777765432 33333333334553222
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.+.....+..+... ..-...+++++-|+++..+++.-+.-++..|.
T Consensus 448 -~EtR~aIL~kka~~------r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~ 493 (617)
T PRK14086 448 -LETRIAILRKKAVQ------EQLNAPPEVLEFIASRISRNIRELEGALIRVT 493 (617)
T ss_pred -HHHHHHHHHHHHHh------cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 23444455444331 12334567888888888877766666666553
No 222
>KOG2004|consensus
Probab=96.78 E-value=0.0042 Score=68.97 Aligned_cols=166 Identities=16% Similarity=0.245 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL 99 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl 99 (978)
+++-+++.-..=.++..+++|+++|+||.|||.+++.|...|-. =||+++...-++...|=
T Consensus 421 eRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR----------------kFfRfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 421 ERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR----------------KFFRFSVGGMTDVAEIK--- 481 (906)
T ss_pred HHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC----------------ceEEEeccccccHHhhc---
Confidence 44555554322224457789999999999999999999977643 15555544444332220
Q ss_pred HHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCc
Q psy9384 100 VEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDK 179 (978)
Q Consensus 100 ~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~ 179 (978)
-+-+.+.. ... --+.++|.......+ +|+||-+|-...+. +.+
T Consensus 482 ------------GHRRTYVG-----AMP--------------GkiIq~LK~v~t~NP--liLiDEvDKlG~g~----qGD 524 (906)
T KOG2004|consen 482 ------------GHRRTYVG-----AMP--------------GKIIQCLKKVKTENP--LILIDEVDKLGSGH----QGD 524 (906)
T ss_pred ------------ccceeeec-----cCC--------------hHHHHHHHhhCCCCc--eEEeehhhhhCCCC----CCC
Confidence 00001111 000 011123334333333 78899999887543 333
Q ss_pred chhhHHHHHHhccC--------CCC---CceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHH
Q psy9384 180 ATCSIADLLARNHH--------LFP---PWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYIL 241 (978)
Q Consensus 180 ~~~~l~~l~~~~~~--------~~~---~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~ 241 (978)
-...|.+++...++ ..| +.|.+|||.......-..+++....|++.++..++--+--++|+-
T Consensus 525 PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 525 PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 44455555543211 123 568888888665432223344456677766655333333444443
No 223
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.77 E-value=0.012 Score=64.16 Aligned_cols=26 Identities=38% Similarity=0.687 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++.+.|+|+||||||+|+..+...+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 34568889999999999999998553
No 224
>PF13173 AAA_14: AAA domain
Probab=96.77 E-value=0.0028 Score=57.24 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
++++.|+|+.|+|||||+..+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999996654
No 225
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.75 E-value=0.012 Score=61.26 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
-..++.|+|+||||||.++..+...+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998554
No 226
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.75 E-value=0.021 Score=63.39 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=54.5
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchh-------hcccCccccccccccchh
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-------KMFLGFHKLSLDDLRKSH 231 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-------~~~~~~~~i~l~~~~~~~ 231 (978)
+++||-++-+... +....++...+..+... +..+|++|...+..+. .+|.....+.+...
T Consensus 205 vLiIDDiq~l~~k--~~~qeelf~l~N~l~~~-------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~p---- 271 (445)
T PRK12422 205 ALFIEDIEVFSGK--GATQEEFFHTFNSLHTE-------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPL---- 271 (445)
T ss_pred EEEEcchhhhcCC--hhhHHHHHHHHHHHHHC-------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCC----
Confidence 7888877766432 11223333333333321 2357777755433332 22222234455432
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
..++...++..+.... .....+++.+-|+.+..|...=+.-+++.|
T Consensus 272 d~e~r~~iL~~k~~~~------~~~l~~evl~~la~~~~~dir~L~g~l~~l 317 (445)
T PRK12422 272 TKEGLRSFLERKAEAL------SIRIEETALDFLIEALSSNVKSLLHALTLL 317 (445)
T ss_pred CHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2367778887777632 133456777777777777665444444444
No 227
>KOG2543|consensus
Probab=96.74 E-value=0.013 Score=60.33 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=53.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.|||-=...+..-+-..+ ..-...+.|+|..|+|||.+..++.+++.- .-.|--|. +-
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------------~~vw~n~~----ec 66 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL------------ENVWLNCV----EC 66 (438)
T ss_pred cCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCC------------cceeeehH----Hh
Confidence 578899987778888877642 124567899999999999999999977621 11221111 23
Q ss_pred cCHHHHHHHHHHHHh
Q psy9384 90 FSVQNFIQSLVEQFS 104 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~ 104 (978)
-+..-++..|+.++-
T Consensus 67 ft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 67 FTYAILLEKILNKSQ 81 (438)
T ss_pred ccHHHHHHHHHHHhc
Confidence 367788888988883
No 228
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.74 E-value=0.0034 Score=54.50 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=33.4
Q ss_pred chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+...+..|+.++ ++.+.-+|-++|.||+|||.+++.|++++-
T Consensus 37 v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 37 VVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 334578898875 445666788899999999999999998864
No 229
>KOG0733|consensus
Probab=96.73 E-value=0.01 Score=64.83 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+.+.+||+||||||.|+..+..++.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~ 248 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELG 248 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcC
Confidence 457789999999999999999997764
No 230
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.70 E-value=0.0089 Score=60.10 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=30.6
Q ss_pred cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.++....+|.+.. ....+.+.++|+||+|||.|+..++.++.
T Consensus 83 ~al~~a~~~~~~~----~~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 83 NALSKARQYVEEF----DGNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHHHHHHHHHhh----ccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445556676642 11235799999999999999999997764
No 231
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.62 E-value=0.024 Score=65.09 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=32.0
Q ss_pred hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+++..|+.... .....++++.|+|+||+|||+++..+...+.
T Consensus 93 i~~l~~~l~~~~-~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 93 IEEVETWLKAQV-LENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHHHHHHHhcc-cccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346889988631 1122456899999999999999999986654
No 232
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.57 E-value=0.03 Score=54.80 Aligned_cols=191 Identities=17% Similarity=0.158 Sum_probs=100.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS 115 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~ 115 (978)
+.+++.++|.-|||||++.+.+...+-. +. ++--+ -+.-+-+...++..++.+|..+ |...-
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~----------d~-~~~v~---i~~~~~s~~~~~~ai~~~l~~~-p~~~~--- 111 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNE----------DQ-VAVVV---IDKPTLSDATLLEAIVADLESQ-PKVNV--- 111 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCC----------Cc-eEEEE---ecCcchhHHHHHHHHHHHhccC-ccchh---
Confidence 4569999999999999999955533321 22 22222 3455667778888999999873 22100
Q ss_pred hhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEe-ccccccccCCCcCCCcchhhHHHHHHhccCC
Q psy9384 116 TIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVD-SIDETHVTNKKIYSDKATCSIADLLARNHHL 194 (978)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviD-aLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~ 194 (978)
....++..+.|.+.... ...+++++|| |=|+-. +.++.++.|-... ..
T Consensus 112 ------------------~~~~e~~~~~L~al~~~---g~r~v~l~vdEah~L~~---------~~le~Lrll~nl~-~~ 160 (269)
T COG3267 112 ------------------NAVLEQIDRELAALVKK---GKRPVVLMVDEAHDLND---------SALEALRLLTNLE-ED 160 (269)
T ss_pred ------------------HHHHHHHHHHHHHHHHh---CCCCeEEeehhHhhhCh---------hHHHHHHHHHhhc-cc
Confidence 00112222233322222 2333555554 434432 2234444433322 23
Q ss_pred CCCceeeeeeecccccchhhc-----ccCccc--cccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHh
Q psy9384 195 FPPWLFLFCTVRRQSKSIKKM-----FLGFHK--LSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHI 267 (978)
Q Consensus 195 ~~~~~~~~~~sr~~~~~i~~~-----~~~~~~--i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~ 267 (978)
......+++...|....-.++ +...-. +.+.. -+...+..|++.++...- ...+=..++.+..+..
T Consensus 161 ~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P----~~~~~t~~yl~~~Le~a~---~~~~l~~~~a~~~i~~ 233 (269)
T COG3267 161 SSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP----LTEAETGLYLRHRLEGAG---LPEPLFSDDALLLIHE 233 (269)
T ss_pred ccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC----cChHHHHHHHHHHHhccC---CCcccCChhHHHHHHH
Confidence 333467788776654321111 111111 33332 244569999999998651 1122234557778888
Q ss_pred hchhhHHHHHHHHhh
Q psy9384 268 KSNGCFLYLERVLDG 282 (978)
Q Consensus 268 ~a~g~flw~~~~~~~ 282 (978)
+++|.+.-+..++..
T Consensus 234 ~sqg~P~lin~~~~~ 248 (269)
T COG3267 234 ASQGIPRLINNLATL 248 (269)
T ss_pred HhccchHHHHHHHHH
Confidence 999977666555443
No 233
>KOG1970|consensus
Probab=96.56 E-value=0.028 Score=60.93 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=30.9
Q ss_pred HHHHHHh-----cCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 21 KLVHCLE-----SKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 21 ~~~~wl~-----~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
++++|+. . +.-++++|+|+|++||||||....+...+-
T Consensus 93 eVk~WL~~~~~~~----~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 93 EVKQWLKQVAEFT----PKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HHHHHHHHHHHhc----cCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 5789998 4 334778999999999999999988875543
No 234
>PF13245 AAA_19: Part of AAA domain
Probab=96.54 E-value=0.0014 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++++.|.|+||+|||+++...+.++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35788999999999997777776554
No 235
>KOG2228|consensus
Probab=96.48 E-value=0.0048 Score=62.28 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=74.2
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL 99 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl 99 (978)
+++.+|+.++- .-|.+.=+.+.|+.|+|||+|..++... .++. +...+. + +-++.-++-.-++++|
T Consensus 34 ~~l~~~lkqt~--~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~-------~E~~l~---v-~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 34 KHLSELLKQTI--LHGESNSVIIIGPRGSGKTILIDTRLSD-IQEN-------GENFLL---V-RLNGELQTDKIALKGI 99 (408)
T ss_pred HHHHHHHHHHH--HhcCCCceEEEccCCCCceEeeHHHHhh-HHhc-------CCeEEE---E-EECccchhhHHHHHHH
Confidence 46888888743 4455667889999999999999998754 1111 111111 1 2344444456689999
Q ss_pred HHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcC-CCCCCcEEEEEeccccccccCCCcCCC
Q psy9384 100 VEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQI-KHPKTSYFILVDSIDETHVTNKKIYSD 178 (978)
Q Consensus 100 ~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~iviDaLDE~~~~~~~~~~~ 178 (978)
.+||........ . ..-++.+.+..+|. .|.+- ..+..+|++|+|-.|=.-.++ +.
T Consensus 100 ~rql~~e~~~~~------------k-------~~gsfte~l~~lL~-~L~~~~~~t~~~ViFIldEfDlf~~h~----rQ 155 (408)
T KOG2228|consen 100 TRQLALELNRIV------------K-------SFGSFTENLSKLLE-ALKKGDETTSGKVIFILDEFDLFAPHS----RQ 155 (408)
T ss_pred HHHHHHHHhhhh------------e-------eecccchhHHHHHH-HHhcCCCCCCceEEEEeehhhccccch----hh
Confidence 999987532210 0 00111223333333 22222 234557899988888765443 33
Q ss_pred cchhhHHHHHH
Q psy9384 179 KATCSIADLLA 189 (978)
Q Consensus 179 ~~~~~l~~l~~ 189 (978)
.++-.+.++.+
T Consensus 156 tllYnlfDisq 166 (408)
T KOG2228|consen 156 TLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 236
>PRK06526 transposase; Provisional
Probab=96.46 E-value=0.0068 Score=61.63 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=24.7
Q ss_pred HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 23 VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 23 ~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+|++. ..-+.|+|+||+|||+|+..+...+
T Consensus 92 ~~fi~~--------~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 92 LDFVTG--------KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred Cchhhc--------CceEEEEeCCCCchHHHHHHHHHHH
Confidence 367764 2458999999999999999997443
No 237
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=96.44 E-value=0.0017 Score=66.92 Aligned_cols=28 Identities=36% Similarity=0.531 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
.+..|.|.|.||+|||+++-.+.+.++.
T Consensus 9 ~G~TLLIKG~PGTGKTtfaLelL~~l~~ 36 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTTFALELLNSLKD 36 (484)
T ss_pred CCcEEEEecCCCCCceeeehhhHHHHhc
Confidence 5678999999999999999999877764
No 238
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.43 E-value=0.014 Score=57.33 Aligned_cols=56 Identities=13% Similarity=0.300 Sum_probs=39.1
Q ss_pred CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccC
Q psy9384 155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLG 218 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~ 218 (978)
..+++|++|=|- .++ .+.--+.|+.++.......|.+|.+..||.|.- -++..+..
T Consensus 105 ~~kFIlf~DDLs---Fe~----~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH-Lv~E~~~d 160 (249)
T PF05673_consen 105 PYKFILFCDDLS---FEE----GDTEYKALKSVLEGGLEARPDNVLIYATSNRRH-LVPESFSD 160 (249)
T ss_pred CCCEEEEecCCC---CCC----CcHHHHHHHHHhcCccccCCCcEEEEEecchhh-ccchhhhh
Confidence 357999999654 111 333357899999999888999999999995533 25555543
No 239
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.42 E-value=0.004 Score=67.25 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=30.2
Q ss_pred ccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 14 CREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 14 ~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+.+..++.+...+.. .+.+.++|+||+|||+++..+...+.
T Consensus 179 i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 179 IPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 344455566666553 35678899999999999999987664
No 240
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.41 E-value=0.0088 Score=60.50 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=53.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhh-ccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLR-KKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAF 114 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~-~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~ 114 (978)
.+++..|.|+||+|||+|+..++-.-. . . +..+.|+=+. . ++ +.++.++-+-.-++.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--------~-~~ge~vlyvs~e--e----~~----~~l~~~~~s~g~d~~~~~ 78 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL--------K-NFGEKVLYVSFE--E----PP----EELIENMKSFGWDLEEYE 78 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--------H-HHT--EEEEESS--S-----H----HHHHHHHHTTTS-HHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh--------h-hcCCcEEEEEec--C----CH----HHHHHHHHHcCCcHHHHh
Confidence 567899999999999999998773211 1 1 3445554433 2 22 555556555443444444
Q ss_pred Hh-hh---cchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 115 ST-IV---EDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 115 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
.. .. +......... ....+.+...+...+.+. +.-.+|||.|...
T Consensus 79 ~~g~l~~~d~~~~~~~~~-----~~~~~~l~~~i~~~i~~~----~~~~vVIDsls~l 127 (226)
T PF06745_consen 79 DSGKLKIIDAFPERIGWS-----PNDLEELLSKIREAIEEL----KPDRVVIDSLSAL 127 (226)
T ss_dssp HTTSEEEEESSGGGST-T-----SCCHHHHHHHHHHHHHHH----TSSEEEEETHHHH
T ss_pred hcCCEEEEeccccccccc-----ccCHHHHHHHHHHHHHhc----CCCEEEEECHHHH
Confidence 33 11 1100000000 111233444444444442 2369999999999
No 241
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.37 E-value=0.0021 Score=50.31 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.|+.|.||+|||+++..+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998664
No 242
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.064 Score=56.59 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=34.5
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..|-+-+.+.+.+.+...+ -...+.++|++|+||++++..++..+.
T Consensus 6 iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred hCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3455556667777777532 346899999999999999999886654
No 243
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.34 E-value=0.01 Score=67.67 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=31.8
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.|.+-..+.+...+..+ ...-++|+|+||+|||+++..+.+.
T Consensus 67 iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 67 IIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred eeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 566666666666666543 3456799999999999999999754
No 244
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.32 E-value=0.0018 Score=59.37 Aligned_cols=25 Identities=32% Similarity=0.242 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.++||+|-||||||||+..+...|.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987764
No 245
>PRK08116 hypothetical protein; Validated
Probab=96.28 E-value=0.01 Score=61.06 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+..++|+|+||+|||.|+..|..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999987654
No 246
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.26 E-value=0.058 Score=57.50 Aligned_cols=118 Identities=13% Similarity=0.077 Sum_probs=64.3
Q ss_pred cEEEEEeccccccccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hcc-----cC--cc
Q psy9384 157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMF-----LG--FH 220 (978)
Q Consensus 157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~-----~~--~~ 220 (978)
.-+++||.+|+.+.+- +. .|.+++.... ...+..+++|++|++...... ..| .. ..
T Consensus 94 gGtL~Ldei~~L~~~~----Q~----~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~ 165 (329)
T TIGR02974 94 GGTLFLDELATASLLV----QE----KLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFD 165 (329)
T ss_pred CCEEEeCChHhCCHHH----HH----HHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcch
Confidence 3589999999997432 22 3334443221 123456899999987653211 112 11 22
Q ss_pred ccccccccchhhhhHHHHHHHHHhcCchHHHhhc--CcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384 221 KLSLDDLRKSHVIRDMQQYILLRLASEESLRVHM--NRDTAEMLNQLHIKS-NGCFLYLERVLDGIS 284 (978)
Q Consensus 221 ~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~--~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~ 284 (978)
.|.+..++ +..+||...+..-+.+........ .....+..+.|.... -|+..=++-+++.+.
T Consensus 166 ~i~lPpLR--eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 166 VITLPPLR--ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred hcCCCchh--hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 45554333 345788887776665432221211 345566666666654 777766666665543
No 247
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.24 E-value=0.027 Score=67.46 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=35.5
Q ss_pred CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
-..++||+-..+++.+-|.... .++ ..|+|+||+|||+++..++..+
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~-----~~n-~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRK-----KNN-PLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCC-----CCc-eEEECCCCCCHHHHHHHHHHHH
Confidence 3468899888888777666531 333 4688999999999999998654
No 248
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.23 E-value=0.037 Score=66.88 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=37.8
Q ss_pred CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..-..++||+-.+.++.+++...+ .++ ..|+|+||+|||+++..+...+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~-----~~n-~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR-----QNN-PILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC-----cCc-eeEECCCCCCHHHHHHHHHHHH
Confidence 344578999988888888887642 333 4599999999999999998554
No 249
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.22 E-value=0.0091 Score=62.97 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=41.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSS 106 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~ 106 (978)
..+-..|.|+||+|||+|+..++..+... .++..+.|.+.. +...++..++++++.++...
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~-------~~dv~~vv~lIg---ER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAAN-------HPEVHLMVLLID---ERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEEec---CCCCCHHHHHHHHhhhEEee
Confidence 44556899999999999999988665321 112223333333 34457789999999887764
No 250
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.20 E-value=0.017 Score=68.82 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=36.3
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+...|-+-+-+++.+|+............++++.|+||+|||++++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4455656666678888874211122245689999999999999999998543
No 251
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.15 E-value=0.0022 Score=55.59 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+||+|+||+|||+++..++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 59999999999999999885543
No 252
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.13 E-value=0.026 Score=64.41 Aligned_cols=24 Identities=42% Similarity=0.715 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+-++|+|+||||||+|++.+...
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999743
No 253
>KOG0738|consensus
Probab=96.10 E-value=0.023 Score=58.71 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=45.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC---CCCccCHHHHHHHHHHHHhcCC-Cc--hh
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY---DLATFSVQNFIQSLVEQFSSSE-SP--FS 111 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~---~~~~~~~~~~l~sl~~QL~~~~-~~--~~ 111 (978)
+-+.+.|+||+|||.|++.|..... ..||--... ..-+...+.++|- ++.|+... |+ +.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~--------------tTFFNVSsstltSKwRGeSEKlvRl-LFemARfyAPStIFi 310 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG--------------TTFFNVSSSTLTSKWRGESEKLVRL-LFEMARFYAPSTIFI 310 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc--------------CeEEEechhhhhhhhccchHHHHHH-HHHHHHHhCCceeeh
Confidence 4577899999999999999984432 333333322 3456677788874 55666643 33 56
Q ss_pred HHHHhhhcch
Q psy9384 112 EAFSTIVEDE 121 (978)
Q Consensus 112 ~~~~~~~~~~ 121 (978)
+.+..++.+.
T Consensus 311 DEIDslcs~R 320 (491)
T KOG0738|consen 311 DEIDSLCSQR 320 (491)
T ss_pred hhHHHHHhcC
Confidence 7777777654
No 254
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.10 E-value=0.014 Score=53.51 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.-++|+|.||+||+.++.++-..
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 4467899999999999999988644
No 255
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.10 E-value=0.027 Score=61.80 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+.|+|+||||||++++.+...+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457789999999999999998654
No 256
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.08 E-value=0.016 Score=63.19 Aligned_cols=26 Identities=38% Similarity=0.692 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+.|+|+||+|||+++..+...+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC
Confidence 34588999999999999999986653
No 257
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.06 E-value=0.0049 Score=69.16 Aligned_cols=43 Identities=26% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
+++++|++..- ......++|.|+|+|||||||.+..+..++.-
T Consensus 29 ~eV~~wl~~~~-~~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 29 EEVRSWLEEMF-SGSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred HHHHHHHHHHh-ccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46789998631 12334679999999999999999999877654
No 258
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.05 E-value=0.026 Score=60.27 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=33.6
Q ss_pred CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
...+.|+.-.++++.+-+..- ...+.-++|+|.+|+||++++..|-.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~----a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL----APLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 345788877776654444431 12446799999999999999998863
No 259
>KOG1969|consensus
Probab=96.05 E-value=0.013 Score=65.50 Aligned_cols=28 Identities=39% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 33 KPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+..++++|.++|+||-||||||..|..+
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHh
Confidence 5567899999999999999999999854
No 260
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.005 Score=55.27 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..|.|+|||||||+++.+.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 56899999999999999998864
No 261
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.01 E-value=0.03 Score=67.93 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=35.8
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+||+--.+++.+||...+ .+++ .|.|+||+|||+++..++..+
T Consensus 180 ~~igr~~ei~~~~~~L~r~~-----~~n~-lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT-----KNNP-ILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc-----cCCe-EEECCCCCCHHHHHHHHHHHH
Confidence 45788888888999988642 4444 699999999999999887554
No 262
>CHL00176 ftsH cell division protein; Validated
Probab=96.00 E-value=0.056 Score=62.66 Aligned_cols=24 Identities=46% Similarity=0.728 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+-+.|+|+||+|||+|++.+...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999743
No 263
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.0041 Score=56.74 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++|++|-+|+|||||+..+-+.|.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 557999999999999999999986664
No 264
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.97 E-value=0.021 Score=56.81 Aligned_cols=21 Identities=43% Similarity=0.650 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++|.|+|||||||++..+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999854
No 265
>KOG0743|consensus
Probab=95.94 E-value=0.0059 Score=64.69 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 23 VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 23 ~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
++|...- ...-.+...|+|+||+|||++.+.++.+|.
T Consensus 224 k~~Ykrv---GkawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 224 KDFYKRV---GKAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred chHHHhc---CcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 3555542 334567899999999999999999997764
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.0041 Score=55.81 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccc
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQ 83 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~ 83 (978)
+.|+|.||+||||++..+++.|.. .+..+.=|++.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~---------~g~kvgGf~t~ 42 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLRE---------KGYKVGGFITP 42 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHh---------cCceeeeEEee
Confidence 679999999999999999988764 24556666665
No 267
>PRK06762 hypothetical protein; Provisional
Probab=95.92 E-value=0.0048 Score=58.91 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++||+|.|||||||++..+.+++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998654
No 268
>KOG2505|consensus
Probab=95.91 E-value=0.0082 Score=63.24 Aligned_cols=41 Identities=32% Similarity=0.639 Sum_probs=39.9
Q ss_pred CchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHH
Q psy9384 884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAA 924 (978)
Q Consensus 884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~ 924 (978)
.|+||+|+..|.-.+|.+||+.|+|+.++|..|+||.+.+.
T Consensus 431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 89999999999999999999999999999999999999887
No 269
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.90 E-value=0.037 Score=59.71 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=62.1
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc--
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT-- 89 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~-- 89 (978)
=+||+-..+.+.+.++.= ..|++.+.+|.|.-|+|||++..++.+.-. ..+.++++.-++.+.+-.
T Consensus 27 ~VGr~~e~~~l~~~l~~v---~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~---------~~~fvvs~v~ls~e~~lh~~ 94 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRV---ADGGSSFKFIRGEYGSGKTFFLRLIRERAL---------EKGFVVSEVDLSPERPLHGT 94 (416)
T ss_pred eechHHHHHHHHHHHHHH---hCCCCeEEEEEeCCCCcHHHHHHHHHHHHH---------HcCCEEEEEecCCCcccccc
Confidence 368888888887777642 346788999999999999999999975422 247778887777643222
Q ss_pred -cCHHHHHHHHHHHHhcCC
Q psy9384 90 -FSVQNFIQSLVEQFSSSE 107 (978)
Q Consensus 90 -~~~~~~l~sl~~QL~~~~ 107 (978)
.....+.|.|+.+|....
T Consensus 95 ~g~~~~~Yr~l~~nL~t~~ 113 (416)
T PF10923_consen 95 GGQLEALYRELMRNLSTKT 113 (416)
T ss_pred cccHHHHHHHHHHhcCCCC
Confidence 377888888888888644
No 270
>PLN02674 adenylate kinase
Probab=95.89 E-value=0.044 Score=54.91 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=27.7
Q ss_pred ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.|++.+..+-+... . ....-++|-|+|||||||+++.+.++
T Consensus 14 ~~~~~~~~~~~~~~---~-~~~~~i~l~G~PGsGKgT~a~~La~~ 54 (244)
T PLN02674 14 VDLMTELLRRMKCS---S-KPDKRLILIGPPGSGKGTQSPIIKDE 54 (244)
T ss_pred HHHHHHHHHHHhhc---c-ccCceEEEECCCCCCHHHHHHHHHHH
Confidence 45666554444321 1 12345789999999999999999854
No 271
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.032 Score=62.69 Aligned_cols=47 Identities=26% Similarity=0.276 Sum_probs=31.9
Q ss_pred ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+-+-+++-++|.-..-++.-...+|++.|+||.|||.|...|.+.+.
T Consensus 329 ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 329 EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 33344554554432111333668999999999999999999996654
No 272
>KOG0652|consensus
Probab=95.87 E-value=0.057 Score=52.33 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=35.9
Q ss_pred CCCcEEEEEecccccccc---CCCcCCCcchhhHHHHHHhccCCCC-Cceeeeeeecccc
Q psy9384 154 PKTSYFILVDSIDETHVT---NKKIYSDKATCSIADLLARNHHLFP-PWLFLFCTVRRQS 209 (978)
Q Consensus 154 ~~~~~~iviDaLDE~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~sr~~~ 209 (978)
...+.+|+||-||-+... +...--+++-+...+++.+.....| ..+++|..+.|-.
T Consensus 262 EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 262 EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 466789999999998542 1111123455667777777654444 4688888887743
No 273
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.85 E-value=0.0056 Score=54.80 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+..|.|.|||||||+++.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999854
No 274
>KOG0731|consensus
Probab=95.81 E-value=0.021 Score=65.47 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=40.5
Q ss_pred CcccccccchH---HHHHHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccc
Q psy9384 10 KKFFCREWAFV---KLVHCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQ 83 (978)
Q Consensus 10 ~~f~~r~w~~~---~~~~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~ 83 (978)
+.+.|.+-.-+ +|.++|.++..- ...-.+...|+|+||||||-||+.+. +.-.|.||++.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiA--------------GEAgVPF~svS 376 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIA--------------GEAGVPFFSVS 376 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHh--------------cccCCceeeec
Confidence 44566655554 456666654211 22235678899999999999999998 34467777766
No 275
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.79 E-value=0.08 Score=55.62 Aligned_cols=97 Identities=10% Similarity=0.095 Sum_probs=54.3
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD 235 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D 235 (978)
+.=++|||..|....+. ...|.+.+. .-|+++.+|+++.....-+.-..+.+..+.+.... .++
T Consensus 113 ~~kV~iI~~ae~m~~~A--------aNaLLKtLE----EPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~----~~~ 176 (319)
T PRK08769 113 IAQVVIVDPADAINRAA--------CNALLKTLE----EPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPP----AHE 176 (319)
T ss_pred CcEEEEeccHhhhCHHH--------HHHHHHHhh----CCCCCCeEEEEECChhhCchHHHhhheEeeCCCcC----HHH
Confidence 44588888888886432 123444454 33456666766655443333333455566664322 367
Q ss_pred HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHH
Q psy9384 236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVL 280 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~ 280 (978)
+..++.++ . ..+.-...++..++|.++.|.-.+
T Consensus 177 ~~~~L~~~-~-----------~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 177 ALAWLLAQ-G-----------VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHHHHHHc-C-----------CChHHHHHHHHHcCCCHHHHHHHh
Confidence 77777642 1 111123456788899988775443
No 276
>KOG3079|consensus
Probab=95.78 E-value=0.038 Score=51.04 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcC-CCchh
Q psy9384 33 KPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSS-ESPFS 111 (978)
Q Consensus 33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~-~~~~~ 111 (978)
+.....+.|+-|+|||||=|.+..|++.. . |-- -|+-.+||.- ..+ ....-
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky--------------~--ftH--------lSaGdLLR~E----~~~~gse~g 55 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKY--------------G--FTH--------LSAGDLLRAE----IASAGSERG 55 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHc--------------C--cee--------ecHHHHHHHH----HccccChHH
Confidence 34467899999999999999999999542 1 111 1333444443 333 33344
Q ss_pred HHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384 112 EAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI 165 (978)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL 165 (978)
..+++......+. +.+....+|.+.+.+...... ++|||.
T Consensus 56 ~~I~~~i~~G~iV-----------P~ei~~~LL~~am~~~~~~~~---fLIDGy 95 (195)
T KOG3079|consen 56 ALIKEIIKNGDLV-----------PVEITLSLLEEAMRSSGDSNG---FLIDGY 95 (195)
T ss_pred HHHHHHHHcCCcC-----------cHHHHHHHHHHHHHhcCCCCe---EEecCC
Confidence 4455544432222 224566677777766543233 899996
No 277
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.76 E-value=0.099 Score=60.49 Aligned_cols=215 Identities=15% Similarity=0.132 Sum_probs=107.8
Q ss_pred CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCC
Q psy9384 8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDL 87 (978)
Q Consensus 8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~ 87 (978)
....+.|+.-.++++.+-+..- .....-++|+|.+|+||++++..|-..... ....+..+-|..-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~----a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r---------~~~pfv~i~c~~~-- 258 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVV----ARSNSTVLLRGESGTGKELIAKAIHYLSPR---------AKRPFVKVNCAAL-- 258 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHH----hCcCCCEEEECCCCccHHHHHHHHHHhCCC---------CCCCeEEeecCCC--
Confidence 3456778777666654444431 114456899999999999999999755321 1333444455422
Q ss_pred CccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc
Q psy9384 88 ATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE 167 (978)
Q Consensus 88 ~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE 167 (978)
+...+.+. |....+. .+....... . .. + + ....-+++||.+|+
T Consensus 259 ----~~~~~~~~---lfg~~~~-------~~~~~~~~~--------~---g~--------~-~---~a~~GtL~ldei~~ 301 (534)
T TIGR01817 259 ----SETLLESE---LFGHEKG-------AFTGAIAQR--------K---GR--------F-E---LADGGTLFLDEIGE 301 (534)
T ss_pred ----CHHHHHHH---HcCCCCC-------ccCCCCcCC--------C---Cc--------c-c---ccCCCeEEEechhh
Confidence 11223322 2221110 000000000 0 00 0 0 11234789999999
Q ss_pred ccccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hcccC-------ccccccccccchh
Q psy9384 168 THVTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMFLG-------FHKLSLDDLRKSH 231 (978)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~~~-------~~~i~l~~~~~~~ 231 (978)
.+..- +. .|.+++.... ...+..+++|++|.+...... ..|+. ...|.+..++.
T Consensus 302 L~~~~----Q~----~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLre-- 371 (534)
T TIGR01817 302 ISPAF----QA----KLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRE-- 371 (534)
T ss_pred CCHHH----HH----HHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCccc--
Confidence 87431 22 3444443221 112235889998877653321 11211 12344443332
Q ss_pred hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhh-chhhHHHHHHHHhhhh
Q psy9384 232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIK-SNGCFLYLERVLDGIS 284 (978)
Q Consensus 232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~-a~g~flw~~~~~~~l~ 284 (978)
..+||...+..-+.+.............+..+.|... ..|+..=++-+++.+.
T Consensus 372 R~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 372 RREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTA 425 (534)
T ss_pred ccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 3478877777666544322121234555666666665 3777776666666543
No 278
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.74 E-value=0.016 Score=61.02 Aligned_cols=77 Identities=16% Similarity=0.290 Sum_probs=43.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchh-----hhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCc
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFS-----QQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESP 109 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~-----~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~ 109 (978)
+...-+.|+|.+|||||++..+++.+......- ....--+..-.|.+.. ..+.+-..-...+.++.++.....+
T Consensus 21 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp~a~~~~~~~~~~~~~~-~~~~~~~qP~~a~~~L~~~~~~N~~ 99 (309)
T PF10236_consen 21 SKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVPSAQDWVNGTTDYAPSP-YNPGLYDQPMYAAKWLKKFLKANEE 99 (309)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcCCHHHHhhCCeeEeeCC-CCCCeeecHHHHHHHHHHHHHHhHH
Confidence 356678999999999999999998553221000 0000001111222322 1555666666777788888776544
Q ss_pred hhH
Q psy9384 110 FSE 112 (978)
Q Consensus 110 ~~~ 112 (978)
+.+
T Consensus 100 ~L~ 102 (309)
T PF10236_consen 100 LLK 102 (309)
T ss_pred HHH
Confidence 333
No 279
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.73 E-value=0.03 Score=57.45 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=36.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS 105 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~ 105 (978)
.+.+..|.|.||+|||+++..++.+.... .+..+.||-+. . ++..+++.++.+...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~E--~----~~~~~~~r~~~~~~~ 67 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSLE--M----SKEQLLQRLLASESG 67 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeCC--C----CHHHHHHHHHHHhcC
Confidence 44688999999999999999998554321 14456655533 2 555666666555443
No 280
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.72 E-value=0.03 Score=52.36 Aligned_cols=18 Identities=50% Similarity=0.768 Sum_probs=16.4
Q ss_pred EEcCCCCcHHHHHHHHhc
Q psy9384 42 IIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 42 l~G~pG~GKS~l~~~ii~ 59 (978)
|.|+|||||||++..+.+
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 579999999999999983
No 281
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.71 E-value=0.031 Score=59.92 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
..+.|+|+|++|+|||+||....+.+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 5678999999999999999999977654
No 282
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.70 E-value=0.023 Score=62.16 Aligned_cols=44 Identities=18% Similarity=0.353 Sum_probs=34.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.|.||+-+.+....-+. .++-++|.|+||+|||+|+..+....
T Consensus 20 ~~i~gre~vI~lll~aal--------ag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--------SGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHc--------cCCCEEEECCCChhHHHHHHHHHHHh
Confidence 568888888887655555 23568999999999999999998543
No 283
>PRK08233 hypothetical protein; Provisional
Probab=95.70 E-value=0.0077 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+++|.|.||||||||+..+.+++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 284
>PRK06851 hypothetical protein; Provisional
Probab=95.66 E-value=0.0077 Score=63.96 Aligned_cols=42 Identities=33% Similarity=0.469 Sum_probs=33.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD 86 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~ 86 (978)
.++++.|+|.||+|||+|++.+++.+.. ....|-+|+|..+.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~---------~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLE---------KGYDVEFLHCSSDN 70 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHH---------cCCeEEEEEcCCCC
Confidence 5689999999999999999999976532 25678888887543
No 285
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.64 E-value=0.019 Score=35.42 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=18.6
Q ss_pred CchHHHHHHhCCHHHHHHHHHcCCCCC
Q psy9384 884 GEKISIAAQEGHEDCVRLLLHYGADPK 910 (978)
Q Consensus 884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~ 910 (978)
.||+++|+..++.+++++|+++|.+++
T Consensus 3 ~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 3 RTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 667777777777777777777666543
No 286
>KOG0726|consensus
Probab=95.59 E-value=0.064 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.++|.||+|||-|++.|...
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcc
Confidence 4567899999999999999999743
No 287
>KOG3347|consensus
Probab=95.58 E-value=0.0071 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.-+.|+|.||+||||+++.+.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 44789999999999999999844
No 288
>KOG0730|consensus
Probab=95.53 E-value=0.069 Score=59.46 Aligned_cols=148 Identities=17% Similarity=0.272 Sum_probs=80.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHH
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAF 114 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~ 114 (978)
...+.+.++|+||+|||.++..|.+. .-+|+|.-. ...++++.+ ..
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e---------------~~a~~~~i~-------~peli~k~~----gE-------- 261 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANE---------------YGAFLFLIN-------GPELISKFP----GE-------- 261 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHH---------------hCceeEecc-------cHHHHHhcc----cc--------
Confidence 35677899999999999999999733 236666441 112222211 11
Q ss_pred HhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCC-c-CCCcchhhHHHHHHhcc
Q psy9384 115 STIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKK-I-YSDKATCSIADLLARNH 192 (978)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~-~-~~~~~~~~l~~l~~~~~ 192 (978)
..+.+++.|.++... ..+.+|+||-||-.-..-.. + ..+.+...+..+.....
T Consensus 262 ---------------------te~~LR~~f~~a~k~----~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~ 316 (693)
T KOG0730|consen 262 ---------------------TESNLRKAFAEALKF----QVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK 316 (693)
T ss_pred ---------------------hHHHHHHHHHHHhcc----CCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc
Confidence 112344444443332 33789999999987542101 1 12234455555555442
Q ss_pred CCCCCceeeeeeecccccchhhccc--Cccc-cccccccchhhhhHHHHHHHHHhc
Q psy9384 193 HLFPPWLFLFCTVRRQSKSIKKMFL--GFHK-LSLDDLRKSHVIRDMQQYILLRLA 245 (978)
Q Consensus 193 ~~~~~~~~~~~~sr~~~~~i~~~~~--~~~~-i~l~~~~~~~~~~Di~~yi~~~l~ 245 (978)
...++.++-+++|+. .|...++ .+.. +++ .+..+.-..||-+.+..++.
T Consensus 317 --~~~~vivl~atnrp~-sld~alRRgRfd~ev~I-giP~~~~RldIl~~l~k~~~ 368 (693)
T KOG0730|consen 317 --PDAKVIVLAATNRPD-SLDPALRRGRFDREVEI-GIPGSDGRLDILRVLTKKMN 368 (693)
T ss_pred --CcCcEEEEEecCCcc-ccChhhhcCCCcceeee-cCCCchhHHHHHHHHHHhcC
Confidence 124666666666654 3555554 2222 333 23444455677666655555
No 289
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.53 E-value=0.0055 Score=57.85 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+.|+|.||+|||||...+++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 57999999999999999997764
No 290
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.53 E-value=0.028 Score=59.80 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=40.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcC
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSS 106 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~ 106 (978)
+.++...|.|+||+|||+|+..+...+... .....+ +++-. .+...++..++++++..++..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n--------hfdv~v-~VlLI-gER~~EVtDLqrsIlg~Vvas 227 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN--------HPEVEL-IVLLI-DERPEEVTDMQRSVKGEVVAS 227 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc--------CCceEE-EEEEc-CCCCccHHHHHHHhhceEEEe
Confidence 456778999999999999999998776531 011222 22222 223347888888887655543
No 291
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.53 E-value=0.0089 Score=57.51 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++++++|.|||||||+++.+.+.+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998554
No 292
>PLN03077 Protein ECB2; Provisional
Probab=95.49 E-value=7.9 Score=48.18 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=22.3
Q ss_pred HHHHhCCHHHHHHHHHc-CCCCCCCcccCccHHHHHHH-cChHHHHHHHH
Q psy9384 889 IAAQEGHEDCVRLLLHY-GADPKHSDHCGRNAFRVAAK-SGHETVLRLLK 936 (978)
Q Consensus 889 ~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~A~~-~~~~~~v~~L~ 936 (978)
.-++.|..+-+.-+++. ...+ |..-+++|.-|+. +|+.++.+...
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~p---d~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITP---DPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33455666555555543 3333 2233445555554 46676655543
No 293
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.49 E-value=0.022 Score=35.04 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=22.4
Q ss_pred CccHHHHHHHcChHHHHHHHHHcCCCCc
Q psy9384 916 GRNAFRVAAKSGHETVLRLLKQYADDSE 943 (978)
Q Consensus 916 g~t~l~~A~~~~~~~~v~~L~~~g~~~~ 943 (978)
|.||+++|+..++.+++++|+++|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 6688888888888888888888877654
No 294
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.11 Score=55.65 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=31.5
Q ss_pred ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+.+.+.+..-+...+ -+..+.++|++|+||++++..++..+.
T Consensus 12 ~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 12 PVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred HHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 445566777766532 456788999999999999999986653
No 295
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.2 Score=53.46 Aligned_cols=96 Identities=8% Similarity=-0.028 Sum_probs=52.4
Q ss_pred CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhh
Q psy9384 155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIR 234 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~ 234 (978)
.+.=++|||.-|-..... ...|.+++. .-|+++.+|+++..+..-+.-..+.+..+.+.... .+
T Consensus 107 g~~kV~iI~~ae~m~~~A--------aNaLLKtLE----EPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~----~~ 170 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAA--------ANALLKTLE----EPPENTWFFLACREPARLLATLRSRCRLHYLAPPP----EQ 170 (334)
T ss_pred CCceEEEEcchHhhCHHH--------HHHHHHHhc----CCCCCeEEEEEECChhhChHHHHhccccccCCCCC----HH
Confidence 344577888888876432 224555554 33456666666655443232333445556664322 46
Q ss_pred HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHH
Q psy9384 235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLE 277 (978)
Q Consensus 235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~ 277 (978)
++..++.++.. ..++-...++.-++|.+..|.
T Consensus 171 ~~~~~L~~~~~-----------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 171 YALTWLSREVT-----------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHHHHHccC-----------CCHHHHHHHHHHcCCCHHHHH
Confidence 77777764321 111224566778888887664
No 296
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.45 E-value=0.0097 Score=55.66 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++|++|.||+||||+++.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999754
No 297
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.42 E-value=0.024 Score=56.64 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++|.|+|||||||+++.+.+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998553
No 298
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.41 E-value=0.037 Score=55.24 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++|.|+|||||||+++.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999854
No 299
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.41 E-value=0.022 Score=58.17 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
+.++|+... +..++||.|.||+|||||+..++..+..
T Consensus 94 ~~r~~~~~~------~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 94 RNRARFAAR------KQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHhc------CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356777754 5678999999999999999999977653
No 300
>KOG0736|consensus
Probab=95.37 E-value=0.26 Score=55.95 Aligned_cols=24 Identities=42% Similarity=0.747 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
+.+.+.++|+||+|||-||+.|..
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 704 KRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred ccceeEEECCCCCchHHHHHHHHh
Confidence 345688999999999999999983
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.36 E-value=0.0097 Score=55.14 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++++.|.|||||||++..+..+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999844
No 302
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.36 E-value=0.088 Score=60.24 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=30.0
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHh
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
.|.|+.-.+.+..+.+..- ......++|+|.+|+||+.++..+-
T Consensus 205 ~~ig~s~~~~~~~~~~~~~----A~~~~pvlI~GE~GtGK~~lA~aiH 248 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKL----AMLDAPLLITGDTGTGKDLLAYACH 248 (520)
T ss_pred ceeECCHHHHHHHHHHHHH----hCCCCCEEEECCCCccHHHHHHHHH
Confidence 4677766555554444321 1134568899999999999999974
No 303
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.13 Score=51.34 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+...+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986543
No 304
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.25 Score=52.03 Aligned_cols=94 Identities=5% Similarity=0.050 Sum_probs=52.3
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD 235 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D 235 (978)
+.=++|||..|...... ...|.+.+. .-|+++.++++|..+..-+.-..+.+..+.+.... .++
T Consensus 107 ~~KV~iI~~a~~m~~~A--------aNaLLKtLE----EPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~----~~~ 170 (325)
T PRK06871 107 GNKVVYIQGAERLTEAA--------ANALLKTLE----EPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPE----EQQ 170 (325)
T ss_pred CceEEEEechhhhCHHH--------HHHHHHHhc----CCCCCeEEEEEECChHhCchHHHhhceEEeCCCCC----HHH
Confidence 34467788888876432 224445454 34557777777765443333334456667765433 378
Q ss_pred HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHH
Q psy9384 236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYL 276 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~ 276 (978)
+..++..+.... ..-...+...++|.+..|
T Consensus 171 ~~~~L~~~~~~~-----------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 171 ALDWLQAQSSAE-----------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHhccC-----------hHHHHHHHHHcCCCHHHH
Confidence 888887653211 111344556677777655
No 305
>KOG2035|consensus
Probab=95.32 E-value=0.5 Score=46.91 Aligned_cols=208 Identities=16% Similarity=0.119 Sum_probs=114.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhh-------hhhhcc-----ceeeecc--ccCCCCccCHHHHHHHHH
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ-------HNLRKK-----LLAYHFC--QSYDLATFSVQNFIQSLV 100 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~-------~~~~~~-----~~~~ff~--~~~~~~~~~~~~~l~sl~ 100 (978)
++-.-|.++|+.|+||-|.+-.+..++-+..-.+. ..+.+. .++.-|. -.....-..-+.++..++
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQell 111 (351)
T KOG2035|consen 32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELL 111 (351)
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHH
Confidence 35578999999999999988888877654321111 111111 1211111 001122233346788888
Q ss_pred HHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcc
Q psy9384 101 EQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKA 180 (978)
Q Consensus 101 ~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~ 180 (978)
.+.++..+-.. ....++ -++||--.||...+. +
T Consensus 112 KevAQt~qie~--------------------------------------~~qr~f--Kvvvi~ead~LT~dA----Q--- 144 (351)
T KOG2035|consen 112 KEVAQTQQIET--------------------------------------QGQRPF--KVVVINEADELTRDA----Q--- 144 (351)
T ss_pred HHHHhhcchhh--------------------------------------ccccce--EEEEEechHhhhHHH----H---
Confidence 88887643200 000112 278888888876432 2
Q ss_pred hhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHH
Q psy9384 181 TCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAE 260 (978)
Q Consensus 181 ~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~ 260 (978)
.-+++.-.+...+.++|++.-...+.|...-+.+--+.+.+ .+.+||...+..-+... .-....+
T Consensus 145 -----~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpa----ps~eeI~~vl~~v~~kE------~l~lp~~ 209 (351)
T KOG2035|consen 145 -----HALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPA----PSDEEITSVLSKVLKKE------GLQLPKE 209 (351)
T ss_pred -----HHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCC----CCHHHHHHHHHHHHHHh------cccCcHH
Confidence 22222222445566777765443333443323344455533 34578887766544422 2234478
Q ss_pred HHHHHHhhchhhHHHHHHHHhhhhccc-eeeccccccccchhHHH
Q psy9384 261 MLNQLHIKSNGCFLYLERVLDGISNGL-IILREIKDIPGTLNGLY 304 (978)
Q Consensus 261 i~~~l~~~a~g~flw~~~~~~~l~~~~-~~~~~l~~lp~~l~~~y 304 (978)
+..+++++|+|+-.=|-++++..+-.. ........+|.--.+.|
T Consensus 210 ~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~ 254 (351)
T KOG2035|consen 210 LLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIY 254 (351)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHH
Confidence 899999999999999999999987322 22222355565444455
No 306
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.31 E-value=0.06 Score=50.85 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=34.2
Q ss_pred CHHHHHHHHHcC-CCCCC---CcccCccHHHHHHHcChHHHHHHHHHcCC
Q psy9384 895 HEDCVRLLLHYG-ADPKH---SDHCGRNAFRVAAKSGHETVLRLLKQYAD 940 (978)
Q Consensus 895 ~~~iv~~Ll~~g-a~~~~---~d~~g~t~l~~A~~~~~~~~v~~L~~~g~ 940 (978)
+..|+++.+++| +++|. +-+.|.|.|+-|+.+++.+++.+|+++|+
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 556777777777 66663 34677888888888888888888888886
No 307
>PRK06851 hypothetical protein; Provisional
Probab=95.29 E-value=0.012 Score=62.62 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=33.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY 85 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~ 85 (978)
-.+.+.|+|+||+|||+|+..++..+.. .+..|.+|.|..+
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~---------~G~~v~~~hC~~d 253 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEE---------RGFDVEVYHCGFD 253 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHh---------CCCeEEEEeCCCC
Confidence 5688999999999999999999977543 3777888888843
No 308
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.28 E-value=0.012 Score=57.73 Aligned_cols=25 Identities=48% Similarity=0.769 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+..+++|.|+|||||||++..+.+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999854
No 309
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.28 E-value=0.016 Score=53.62 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
+.+.|.|+||+|||+++..++..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 57899999999999999999977754
No 310
>KOG0735|consensus
Probab=95.26 E-value=0.13 Score=57.73 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+-+.|.|++|+|||+|+..+++...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~ 456 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS 456 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc
Confidence 346689999999999999999998765
No 311
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.26 E-value=0.033 Score=56.29 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+.+|+|+||+|||+++..++.+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998553
No 312
>KOG0635|consensus
Probab=95.22 E-value=0.016 Score=50.87 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
++-+..+.+ +..+.|++|-.|||||||+..+-+.|.
T Consensus 21 ~eRq~l~~q-------kGcviWiTGLSgSGKStlACaL~q~L~ 56 (207)
T KOG0635|consen 21 EERQKLLKQ-------KGCVIWITGLSGSGKSTLACALSQALL 56 (207)
T ss_pred HHHHHHhcC-------CCcEEEEeccCCCCchhHHHHHHHHHH
Confidence 345677765 668999999999999999998876654
No 313
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.22 E-value=0.2 Score=51.17 Aligned_cols=217 Identities=13% Similarity=0.149 Sum_probs=114.4
Q ss_pred hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHH
Q psy9384 19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQS 98 (978)
Q Consensus 19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~s 98 (978)
++++.+-+..+. ...-.-|.|.|++|.|||+++....+.--... . .......|.|. ..+..-+...+..+
T Consensus 46 L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d--~~~~~~PVv~v----q~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 46 LDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-D--EDAERIPVVYV----QMPPEPDERRFYSA 115 (302)
T ss_pred HHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-C--CCCccccEEEE----ecCCCCChHHHHHH
Confidence 356677777663 22334499999999999999998874311110 0 00012234332 25666777889999
Q ss_pred HHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCC
Q psy9384 99 LVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSD 178 (978)
Q Consensus 99 l~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~ 178 (978)
|+.+|......-. ............+..+ +.=++|||-+-.+-.+ ....++
T Consensus 116 IL~~lgaP~~~~~------------------------~~~~~~~~~~~llr~~----~vrmLIIDE~H~lLaG-s~~~qr 166 (302)
T PF05621_consen 116 ILEALGAPYRPRD------------------------RVAKLEQQVLRLLRRL----GVRMLIIDEFHNLLAG-SYRKQR 166 (302)
T ss_pred HHHHhCcccCCCC------------------------CHHHHHHHHHHHHHHc----CCcEEEeechHHHhcc-cHHHHH
Confidence 9999987543200 0011111111222232 2237788877665322 233466
Q ss_pred cchhhHHHHHHhccCCCCCceeeeeeecccc-------cchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHH
Q psy9384 179 KATCSIADLLARNHHLFPPWLFLFCTVRRQS-------KSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLR 251 (978)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~-------~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~ 251 (978)
+++..|+.+-... . +-++++.-++- +.+..+| ..+.+..+.. .+|.+.++..--..++ ++
T Consensus 167 ~~Ln~LK~L~NeL--~----ipiV~vGt~~A~~al~~D~QLa~RF---~~~~Lp~W~~---d~ef~~LL~s~e~~LP-Lr 233 (302)
T PF05621_consen 167 EFLNALKFLGNEL--Q----IPIVGVGTREAYRALRTDPQLASRF---EPFELPRWEL---DEEFRRLLASFERALP-LR 233 (302)
T ss_pred HHHHHHHHHhhcc--C----CCeEEeccHHHHHHhccCHHHHhcc---CCccCCCCCC---CcHHHHHHHHHHHhCC-CC
Confidence 6777777665533 1 23455442211 1244443 3445544332 4577777654333222 33
Q ss_pred hhcCcChHHHHHHHHhhchhhHH-----HHHHHHhhhhccc
Q psy9384 252 VHMNRDTAEMLNQLHIKSNGCFL-----YLERVLDGISNGL 287 (978)
Q Consensus 252 ~~~~~~~~~i~~~l~~~a~g~fl-----w~~~~~~~l~~~~ 287 (978)
..+.-...++.+.|.++++|+-= --..+..+|.++.
T Consensus 234 ~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 234 KPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred CCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCC
Confidence 33333346788999999988743 2234445555444
No 314
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.20 E-value=0.0095 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++||+|.||||||++++.+...+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 315
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.18 E-value=0.042 Score=55.59 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS 105 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~ 105 (978)
+.+....|.|+||+|||||+..++..+... ......+ ++-. .....++..+++.+...++-
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~--------~fdv~~~-v~vI-~er~~ev~el~~~I~~~~v~ 74 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN--------HPEVYLI-VLLI-DERPEEVTDMQRSVKGEVIA 74 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc--------cCCeEEE-EEEc-cCCCccHHHHHHHhccEEEE
Confidence 356678999999999999999999776531 0122222 2221 22234788888888444443
No 316
>KOG0735|consensus
Probab=95.18 E-value=0.3 Score=54.90 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....++|+||||||.|++.++..
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~ 724 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASN 724 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhh
Confidence 34678999999999999999843
No 317
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.17 E-value=0.3 Score=51.96 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=31.3
Q ss_pred cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
|+-+..+++.... + .-..-++++|++|+||++++..++..+.
T Consensus 5 W~~~~~~~l~~~~---~-rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 5 WQTDDWNRLQALR---A-RLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred ccHHHHHHHHHhc---C-CcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 7766667766541 1 2445788999999999999999986654
No 318
>KOG0651|consensus
Probab=95.17 E-value=0.07 Score=53.53 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
....+.|+|+||+|||.++..|...+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 45789999999999999999998544
No 319
>PRK13808 adenylate kinase; Provisional
Probab=95.16 E-value=0.3 Score=51.32 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++|.|+||+|||+++..+.+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ 23 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQ 23 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999744
No 320
>PRK06696 uridine kinase; Validated
Probab=95.14 E-value=0.015 Score=58.45 Aligned_cols=45 Identities=22% Similarity=0.137 Sum_probs=33.9
Q ss_pred cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
|.-+.+++-+++... ..+..-+.-|.|.+|||||||+..+++.|.
T Consensus 3 ~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 555667777887653 223455788899999999999999997763
No 321
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.12 E-value=0.0097 Score=57.40 Aligned_cols=27 Identities=37% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++|+.|.|||||||++..+...+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999986654
No 322
>PLN02459 probable adenylate kinase
Probab=95.11 E-value=0.061 Score=54.14 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++|.|+|||||||+++.+.+.
T Consensus 32 ii~~G~PGsGK~T~a~~la~~ 52 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKL 52 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 566899999999999999843
No 323
>PRK14529 adenylate kinase; Provisional
Probab=95.09 E-value=0.058 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++|.|+|||||||+++.+.+++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998654
No 324
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=95.09 E-value=0.082 Score=48.68 Aligned_cols=126 Identities=17% Similarity=0.065 Sum_probs=79.5
Q ss_pred cchHHHhhchHHHHHHHHHhcc---cccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc----
Q psy9384 787 HISRQEYKKRLHILRKIISIAN---NEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA---- 859 (978)
Q Consensus 787 ~l~~a~~~g~~~i~~~l~~~~~---~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~---- 859 (978)
.+.-|++.+.+.++++.-+... ....+.+. .||...+.+ +|+|+-.+ ....+ -.+-+..|..
T Consensus 49 Ll~HAVk~nmL~ILqkyke~L~~~~~~~q~LFE--lAC~~qkyd---iV~WI~qn----L~i~~--~~~iFdIA~~~kDl 117 (192)
T PF03158_consen 49 LLYHAVKYNMLSILQKYKEDLENERYLNQELFE--LACEEQKYD---IVKWIGQN----LHIYN--PEDIFDIAFAKKDL 117 (192)
T ss_pred HHHHHHHcCcHHHHHHHHHHhhcchhHHHHHHH--HHHHHcccc---HHHHHhhc----cCCCC--chhhhhhhhhccch
Confidence 4567888899999988877652 34566666 999999999 99999554 11111 1111122222
Q ss_pred -----hhhhhhhc-----cCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChH
Q psy9384 860 -----VPSATDEH-----FSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHE 929 (978)
Q Consensus 860 -----~v~~L~~~-----g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 929 (978)
--+++.+. +.++..-- ..-|..|+..|....|.-.+++|.+++. ++|-.|+.++|.
T Consensus 118 sLyslGY~l~~~~~~~~~~~d~~~ll--------~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhR 183 (192)
T PF03158_consen 118 SLYSLGYKLLFNRMMSEHNEDPTSLL--------TQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHR 183 (192)
T ss_pred hHHHHHHHHHHhhcccccccCHHHHH--------HHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHH
Confidence 11222222 22222222 3457788888888888888888877653 578888888888
Q ss_pred HHHHHHHH
Q psy9384 930 TVLRLLKQ 937 (978)
Q Consensus 930 ~~v~~L~~ 937 (978)
.++.+++.
T Consensus 184 kIL~yfi~ 191 (192)
T PF03158_consen 184 KILDYFIR 191 (192)
T ss_pred HHHHHhhc
Confidence 88887753
No 325
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.08 E-value=0.015 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
....+||+|.||||||+++..+.+.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998554
No 326
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.04 E-value=0.013 Score=56.96 Aligned_cols=23 Identities=48% Similarity=0.811 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+|.|+|||||||+++.+.+++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999999999999998553
No 327
>KOG2505|consensus
Probab=95.01 E-value=0.028 Score=59.44 Aligned_cols=64 Identities=30% Similarity=0.249 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384 389 GFVDAVQILLEAGANIN------HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452 (978)
Q Consensus 389 g~~~~v~~Ll~~g~~~~------~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~ 452 (978)
.-.+.+++|.+++.+.| ..+..-.|+||||+..|.-++|.+||+.|+|+...|..|.||...+.
T Consensus 402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 34667888888776643 22344568888888888888888888888888888888888887776
No 328
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.01 E-value=0.18 Score=60.80 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+.|+|+||+|||+|+..+...+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh
Confidence 4568899999999999999997543
No 329
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.01 E-value=0.017 Score=60.05 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=39.0
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.|+|=+-.+++|.+.+..-.......+++||+.|++|+|||+|+..+..-+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4666666667777777653222445788999999999999999999986654
No 330
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.97 E-value=0.069 Score=64.83 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=36.3
Q ss_pred CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
-..++||+-.+.++.+-|... ..+-..|+|+||+|||+|+..+...+.
T Consensus 177 l~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 346889988777777766653 334466889999999999999986543
No 331
>PRK08118 topology modulation protein; Reviewed
Probab=94.95 E-value=0.015 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+|.|+||||||||++.+.+.+.
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999986653
No 332
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.95 E-value=0.053 Score=55.27 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+.-|+|+||+|||+|+..++.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 56788999999999999999997543
No 333
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.94 E-value=0.01 Score=56.77 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=23.2
Q ss_pred HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 23 VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 23 ~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+|++. +.-++|+|+||+|||.|+..++.++
T Consensus 41 ~~~~~~--------~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 41 LEFIEN--------GENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp H-S-SC----------EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCccc--------CeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 577763 3569999999999999999998554
No 334
>PRK14527 adenylate kinase; Provisional
Probab=94.94 E-value=0.018 Score=56.26 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++|+.|+|||||||+++.+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55789999999999999999998543
No 335
>COG3911 Predicted ATPase [General function prediction only]
Probab=94.93 E-value=0.02 Score=50.35 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhc
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
+++.|+|.||+|||||.+.+..
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~ 31 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALAR 31 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHH
Confidence 5899999999999999998873
No 336
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.93 E-value=0.13 Score=50.99 Aligned_cols=27 Identities=37% Similarity=0.382 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||.+.+..-+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446899999999999999999986553
No 337
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.2 Score=57.41 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.++|+||||||+|++.+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999854
No 338
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.85 E-value=0.02 Score=60.05 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=32.4
Q ss_pred cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
|.-++....+|++.-. .....+.|+|+|+||+|||.|+..+...+.
T Consensus 136 ~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 136 RLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred HHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3334444577887531 111346799999999999999999997764
No 339
>PRK10536 hypothetical protein; Provisional
Probab=94.84 E-value=0.034 Score=55.46 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=33.2
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
-..+|+.-...+..|+.+ ..+.+++|++|||||+|+..+..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 56 PILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345566666678889874 359999999999999999988753
No 340
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.84 E-value=0.03 Score=58.25 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=34.4
Q ss_pred CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
|..+..|.-+.-+...+..|+.. ++-++|.|.||+|||+++..+...+.
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 33344444344444567788763 35699999999999999999986653
No 341
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.82 E-value=0.012 Score=53.45 Aligned_cols=22 Identities=50% Similarity=0.552 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+|.|.||+||||++..+.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999999998553
No 342
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.80 E-value=0.1 Score=52.76 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+..|.|+||+|||+|+..++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 56799999999999999999998553
No 343
>PRK06761 hypothetical protein; Provisional
Probab=94.80 E-value=0.021 Score=58.47 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
.++.||+|.|||||||+++.+.+++..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 368999999999999999999988753
No 344
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.78 E-value=0.031 Score=49.89 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|..|+|||++++.++..+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998764
No 345
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.77 E-value=0.23 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
.+-++.|.|+.|||||||...+-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45699999999999999999775
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.74 E-value=0.097 Score=54.70 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=36.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS 105 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~ 105 (978)
...+..|.|.||+|||+++..++.++... .+..+.||-+. . ++..+++-+..++..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E--~----~~~~~~~r~~~~~~~ 84 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLE--E----PVVRTARRLLGQYAG 84 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEcc--c----CHHHHHHHHHHHHhC
Confidence 34578889999999999999988664320 14456665533 2 344556666555543
No 347
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=94.72 E-value=0.012 Score=58.43 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccc
Q psy9384 154 PKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQ 208 (978)
Q Consensus 154 ~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~ 208 (978)
..++++++||.+.+.-..........+.+.+.++.+... ..++.+++++.++
T Consensus 152 ~~~~i~~~iDe~~~l~~~~~~~~~~~~~~~l~~i~~~gR---~~Gi~li~~~Q~p 203 (205)
T PF01580_consen 152 ELPPIFIVIDEFAALRDSAPDDSKKEIMDLLARIARKGR---AAGIHLILATQRP 203 (205)
T ss_dssp ---EEEEEECTHHHHHHHHHHH----HHHHHHHHHHHCG---GGTEEEEEEESS-
T ss_pred cCchHHHHhhhHHHHHhhcchhhHHHHHHHHHHHHHHHH---hcCEEEEEEeCCC
Confidence 467899999999888543212224456667777776543 2468888888775
No 348
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.69 E-value=0.19 Score=60.55 Aligned_cols=24 Identities=46% Similarity=0.771 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+.|+|+||||||+|++.+...+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc
Confidence 447789999999999999998543
No 349
>PHA00729 NTP-binding motif containing protein
Probab=94.68 E-value=0.026 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.-+.|+|+||+|||+||..+...+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999998543
No 350
>PHA02244 ATPase-like protein
Probab=94.68 E-value=0.035 Score=58.47 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=33.8
Q ss_pred CCcccccccchH----HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 9 SKKFFCREWAFV----KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 9 ~~~f~~r~w~~~----~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+..|.|+.-.++ .+..|+... .-++|.|+||||||+|+..+...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 366777766664 467888853 45788999999999999999854
No 351
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.68 E-value=0.12 Score=63.09 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=34.7
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..++||+-.+.++.+-|... ..+-..|+|+||+|||+++..++..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45788988777777766653 33345578999999999999988654
No 352
>PRK14531 adenylate kinase; Provisional
Probab=94.68 E-value=0.019 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.-+++.|+|||||||++..+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999844
No 353
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.67 E-value=0.049 Score=63.13 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=48.1
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS 91 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~ 91 (978)
+.|.+-+...++..+... +.+.++|+||+|||+++..+.+.+-.. .-..++||+ +... +
T Consensus 20 viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~~~--------~~~~~~~~~-n~~~----~ 78 (608)
T TIGR00764 20 VIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLPDE--------ELEDILVYP-NPED----P 78 (608)
T ss_pred ccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcCch--------hheeEEEEe-CCCC----C
Confidence 345555555556656542 356699999999999999999776431 013455544 3222 5
Q ss_pred HHHHHHHHHHHHhcC
Q psy9384 92 VQNFIQSLVEQFSSS 106 (978)
Q Consensus 92 ~~~~l~sl~~QL~~~ 106 (978)
+..++++++.++..+
T Consensus 79 ~~~~~~~v~~~~g~~ 93 (608)
T TIGR00764 79 NMPRIVEVPAGEGRE 93 (608)
T ss_pred chHHHHHHHHhhchH
Confidence 566788888888764
No 354
>PRK12377 putative replication protein; Provisional
Probab=94.64 E-value=0.02 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...++|+|+||+|||.|+..+...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999997664
No 355
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.013 Score=54.84 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
.++.++|.||+|||+++..++..|++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 36788999999999999999977765
No 356
>KOG0733|consensus
Probab=94.62 E-value=0.1 Score=57.39 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....++++|+||||||-|++.|...
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE 568 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE 568 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh
Confidence 3456788999999999999999855
No 357
>PLN02200 adenylate kinase family protein
Probab=94.61 E-value=0.024 Score=56.97 Aligned_cols=24 Identities=46% Similarity=0.758 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+++|.|+|||||||+++.+.++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357888999999999999999854
No 358
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.58 E-value=0.27 Score=46.33 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=29.2
Q ss_pred chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+.+.+...+.+.+ -+..+.++|++|+||++++..++..+.
T Consensus 5 ~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 5 IIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp HHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3455677776532 456789999999999999999986654
No 359
>PHA02774 E1; Provisional
Probab=94.57 E-value=0.039 Score=61.33 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=32.1
Q ss_pred hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+..++.|+.+. .+.+-+||+|+||+|||.++..++..+.
T Consensus 421 l~~lk~~l~~~-----PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 421 LTALKDFLKGI-----PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999863 3567899999999999999999996653
No 360
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.54 E-value=0.15 Score=60.46 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=33.3
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+||+--+.++.+.+...+ .+. .+|.|+||+|||+++..+...
T Consensus 187 ~liGR~~ei~~~i~iL~r~~-----~~n-~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR-----KNN-PLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC-----CCC-eEEECCCCCCHHHHHHHHHHH
Confidence 46788887888777777631 333 468999999999999998744
No 361
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.027 Score=54.78 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+..|-|.|..|||||||+..++--..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 456899999999999999999985543
No 362
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.47 E-value=0.028 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+|.|.||+||||++..+.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999855
No 363
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.47 E-value=0.021 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++||.|.||+||||++..+...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998655
No 364
>KOG0730|consensus
Probab=94.43 E-value=0.5 Score=52.98 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+...++|+||||||++++.+...
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhh
Confidence 4567889999999999999999854
No 365
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=94.37 E-value=0.37 Score=45.76 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9384 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612 (978)
Q Consensus 561 L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ 612 (978)
|.-|+...+.+-+.-++...-+ ..+++.+++.++..+++-+|+.+
T Consensus 157 ledAV~AsN~~~i~~~VtdKkd-------A~~Am~~si~~~K~dva~~lls~ 201 (284)
T PF06128_consen 157 LEDAVKASNYEEISNLVTDKKD-------AHQAMWLSIGNAKEDVALYLLSK 201 (284)
T ss_pred HHHHHhhcCHHHHHHHhcchHH-------HHHHHHHHhcccHHHHHHHHHhh
Confidence 4445555555555544433211 12556666666666666666643
No 366
>PRK07261 topology modulation protein; Provisional
Probab=94.31 E-value=0.027 Score=53.69 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..|.|.||||||||+..+.+.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999997554
No 367
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.31 E-value=0.045 Score=52.88 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+..++.|+|++|+|||+|+..++...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 56789999999999999999998764
No 368
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=94.30 E-value=0.41 Score=44.29 Aligned_cols=72 Identities=13% Similarity=0.027 Sum_probs=48.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS 424 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~ 424 (978)
..+..|+..+.++++.+.-+...+ .-...++.+..||+..+.|+|+|+-+.- .-.+-.+.+..|...++.
T Consensus 48 CLl~HAVk~nmL~ILqkyke~L~~-----~~~~~q~LFElAC~~qkydiV~WI~qnL-----~i~~~~~iFdIA~~~kDl 117 (192)
T PF03158_consen 48 CLLYHAVKYNMLSILQKYKEDLEN-----ERYLNQELFELACEEQKYDIVKWIGQNL-----HIYNPEDIFDIAFAKKDL 117 (192)
T ss_pred HHHHHHHHcCcHHHHHHHHHHhhc-----chhHHHHHHHHHHHHccccHHHHHhhcc-----CCCCchhhhhhhhhccch
Confidence 357888899999988888763111 1224567888999999999999984421 112223566778888887
Q ss_pred HH
Q psy9384 425 AV 426 (978)
Q Consensus 425 ~i 426 (978)
++
T Consensus 118 sL 119 (192)
T PF03158_consen 118 SL 119 (192)
T ss_pred hH
Confidence 76
No 369
>PRK04040 adenylate kinase; Provisional
Probab=94.26 E-value=0.027 Score=54.53 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+..|+|.|||||||++..+.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999998665
No 370
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.21 E-value=0.039 Score=54.53 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 33 KPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++...+++.|+|++|||||+|+..+.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4456788999999999999999999754
No 371
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.21 E-value=0.4 Score=48.13 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|..|||||||++.+..-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998554
No 372
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.20 E-value=0.044 Score=60.83 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=33.5
Q ss_pred cccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 13 FCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 13 ~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+|=+-..+++.+.+...........++||+.|+||+|||+|+..+...+.
T Consensus 79 yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 79 YGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 34444445666666110000334678999999999999999999986554
No 373
>PRK08181 transposase; Validated
Probab=94.17 E-value=0.036 Score=56.70 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=25.2
Q ss_pred HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 23 VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 23 ~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+|++.. .-++|+|+||+|||.|+..+..++
T Consensus 100 ~~~~~~~--------~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 100 DSWLAKG--------ANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred HHHHhcC--------ceEEEEecCCCcHHHHHHHHHHHH
Confidence 4798742 359999999999999999998554
No 374
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.31 Score=49.50 Aligned_cols=27 Identities=33% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||++.+...+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557899999999999999999986553
No 375
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.17 E-value=0.14 Score=50.21 Aligned_cols=27 Identities=44% Similarity=0.554 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+..|.|+||+|||+++..++-++.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346889999999999999999986543
No 376
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.15 E-value=0.37 Score=51.20 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=32.0
Q ss_pred cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
|+-+.+++|.... ..-..-+.++|++|+|||+++..+...+.
T Consensus 5 W~~~~w~~l~~~~----~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 5 WHQEQWRQIAEHW----ERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred ccHHHHHHHHHhc----CCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 7777778887652 12345688999999999999999986653
No 377
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.13 E-value=0.05 Score=40.79 Aligned_cols=23 Identities=43% Similarity=0.447 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+..|+|+.|+|||||+-.+.--|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999998876443
No 378
>PRK14532 adenylate kinase; Provisional
Probab=94.12 E-value=0.032 Score=54.52 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+++.|+|||||||+++.+.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999844
No 379
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.12 E-value=0.43 Score=47.70 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.-.+.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999986553
No 380
>COG4240 Predicted kinase [General function prediction only]
Probab=94.11 E-value=0.035 Score=52.83 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
.++..|.... +..=++-|+|+.||||||+++.|+.+|+.
T Consensus 38 ~Kiap~~qe~-----grPli~gisGpQGSGKStls~~i~~~L~~ 76 (300)
T COG4240 38 AKIAPWAQER-----GRPLIVGISGPQGSGKSTLSALIVRLLAA 76 (300)
T ss_pred Hhhhhhhhhc-----CCceEEEeecCCCCchhhHHHHHHHHHHH
Confidence 4666665532 24557888999999999999999988764
No 381
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.10 E-value=0.27 Score=51.48 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=51.1
Q ss_pred ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhh---------hhhhccceeeeccccCC
Q psy9384 16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ---------HNLRKKLLAYHFCQSYD 86 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~---------~~~~~~~~~~ff~~~~~ 86 (978)
.++++.+.-.+. .+.++-+-|+.|+|||||++.+..-+...+..-. .......++|..-...-
T Consensus 18 ~~~l~~vs~~i~--------~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~ 89 (293)
T COG1131 18 KTALDGVSFEVE--------PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89 (293)
T ss_pred CEEEeceeEEEc--------CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCC
Confidence 455555544444 4469999999999999999999866654321110 01123457777766556
Q ss_pred CCccCHHHHHHHHHHHH
Q psy9384 87 LATFSVQNFIQSLVEQF 103 (978)
Q Consensus 87 ~~~~~~~~~l~sl~~QL 103 (978)
...-++...|.-++.--
T Consensus 90 ~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 90 YPELTVRENLEFFARLY 106 (293)
T ss_pred CccccHHHHHHHHHHHh
Confidence 77778877777655443
No 382
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.09 E-value=0.034 Score=54.71 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++||+|.+|||||||+..+...+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 55799999999999999999998655
No 383
>PRK03839 putative kinase; Provisional
Probab=94.07 E-value=0.031 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...|.|.|||||||++..+.+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998554
No 384
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.03 E-value=0.34 Score=49.45 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||++.+...+.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999986554
No 385
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.036 Score=50.77 Aligned_cols=19 Identities=53% Similarity=0.866 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q psy9384 40 ALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii 58 (978)
..|+|.||+||||+++.+-
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 5689999999999999986
No 386
>PRK14528 adenylate kinase; Provisional
Probab=94.00 E-value=0.034 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.++|.|+|||||||+++.+.++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999744
No 387
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.00 E-value=0.038 Score=55.00 Aligned_cols=26 Identities=38% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++.|.|.+|||||||+..+...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998776
No 388
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.99 E-value=0.035 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.183 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+..|.|.|||||||++..+.+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999776
No 389
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.98 E-value=0.039 Score=50.77 Aligned_cols=22 Identities=45% Similarity=0.795 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.|.|+||+|||+|+..+...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998443
No 390
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.96 E-value=0.45 Score=48.28 Aligned_cols=27 Identities=30% Similarity=0.199 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986543
No 391
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.95 E-value=0.036 Score=55.24 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..++.+|+|+||+|||+++-.++.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999887553
No 392
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.34 Score=48.66 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||++.+...+.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999986543
No 393
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.95 E-value=0.047 Score=66.19 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=34.7
Q ss_pred CcccccccchHHHHHHHhcCCCC--CCC-CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNS--KPG-NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~--~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
++++|.+...+.+...+...... +++ ..+.+++.|+||+|||+++..+.+.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 45667777776665555432100 111 124688999999999999999986653
No 394
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.94 E-value=0.045 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.++++.|.+|||||||++.+...+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998554
No 395
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.93 E-value=0.41 Score=48.06 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||+..+.--+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 396
>PRK14530 adenylate kinase; Provisional
Probab=93.92 E-value=0.036 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+..+|.|+|||||||+++.+.+.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999998554
No 397
>PRK01184 hypothetical protein; Provisional
Probab=93.92 E-value=0.037 Score=53.79 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=16.6
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q psy9384 39 GALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii 58 (978)
+++|+|+|||||||++. +.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~ 21 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IA 21 (184)
T ss_pred EEEEECCCCCCHHHHHH-HH
Confidence 78999999999999876 44
No 398
>PRK02496 adk adenylate kinase; Provisional
Probab=93.89 E-value=0.034 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++|.|+|||||||+++.+.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998543
No 399
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.88 E-value=0.058 Score=47.70 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAES 64 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~ 64 (978)
+.-++-+-|+.|||||||.++++-+|...
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~ 55 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQ 55 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence 45689999999999999999999887653
No 400
>PRK15453 phosphoribulokinase; Provisional
Probab=93.86 E-value=0.04 Score=55.69 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...+.||+|.|||||||++..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999885543
No 401
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.84 E-value=0.76 Score=52.70 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+.|+.-.++++.+-+.. -...+.-++|+|.+|+||+.++..|-...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~----~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEV----VAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHH----HhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34577776666554444443 12245679999999999999999997553
No 402
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.81 E-value=0.33 Score=48.31 Aligned_cols=26 Identities=31% Similarity=0.188 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||.+.+.--+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999998554
No 403
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.78 E-value=0.11 Score=55.92 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.|.+++.. .++++.|+|++||||||++..++..+.
T Consensus 113 ~l~~~~~~-------~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 113 VLRELAER-------PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHHhh-------cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46667654 458899999999999999999987654
No 404
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.78 E-value=0.053 Score=57.37 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++.++...+ +.+....+||.|.||||||+++..+.+.+
T Consensus 120 l~~~~~~~~--~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 120 LSGMLGAGR--RAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHhhhh--hccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566666654 67778899999999999999999998665
No 405
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.039 Score=52.65 Aligned_cols=22 Identities=45% Similarity=0.756 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.|-|+||+||||+|+.+.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998663
No 406
>PHA02624 large T antigen; Provisional
Probab=93.76 E-value=0.063 Score=59.97 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
-++.|+.+- .+++.++++|+||+|||+++..+++.|.
T Consensus 420 ~lk~~l~gi-----PKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 420 ILKLIVENV-----PKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred HHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 357788763 3678999999999999999999997774
No 407
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.74 E-value=0.047 Score=50.04 Aligned_cols=51 Identities=31% Similarity=0.331 Sum_probs=33.7
Q ss_pred CCcccccccchHH-HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 9 SKKFFCREWAFVK-LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 9 ~~~f~~r~w~~~~-~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+++|.+|.-+|.+ ..+=++. -+..-..++.|-+.|..|||||||++.++--
T Consensus 11 sKtF~~~~~lf~r~~~~AV~~-vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 11 SKTFRYRTGLFRRQTVEAVKP-VSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred hhhhhhhhhhhhhhhhhcccc-eEEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence 5789999888853 1111111 0001115678999999999999999998733
No 408
>PRK08356 hypothetical protein; Provisional
Probab=93.74 E-value=0.051 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
+..++.|+|+|||||||++..+.
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999995
No 409
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.73 E-value=0.041 Score=55.25 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+.+|+|+||+|||+++..++.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998554
No 410
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.72 E-value=0.47 Score=47.37 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||...+...+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 557899999999999999999986653
No 411
>PTZ00301 uridine kinase; Provisional
Probab=93.72 E-value=0.034 Score=54.64 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
-++-|.|+||||||||+..+++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 467889999999999999888665
No 412
>KOG3928|consensus
Probab=93.68 E-value=1.9 Score=45.58 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
-.-+.|.|.||+|||+.+++++.+..
T Consensus 179 ~~r~vL~Ge~GtGKSiaL~qa~h~a~ 204 (461)
T KOG3928|consen 179 VKRFVLDGEPGTGKSIALAQAVHYAA 204 (461)
T ss_pred ceEEEEeCCCCCchhhHHHHHHHHHh
Confidence 34588999999999999999986543
No 413
>PRK06547 hypothetical protein; Provisional
Probab=93.65 E-value=0.053 Score=51.52 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+..|.|.+||||||++..+.+.+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45677788999999999999998654
No 414
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.62 E-value=0.11 Score=49.51 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=73.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS 115 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~ 115 (978)
-+.++.|.|+-|+|||+|+..++--+.. ....++|.- .+.-.|..+.|.-+-.-++.+.+-
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~---------~g~~v~yvs----------Te~T~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLM---------NGYRVTYVS----------TELTVREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHh---------CCceEEEEE----------echhHHHHHHHHHhcCCCchHHHh
Confidence 4678999999999999999988733322 144455532 223378889998875545444433
Q ss_pred h-hhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCC
Q psy9384 116 T-IVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHL 194 (978)
Q Consensus 116 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~ 194 (978)
. ...-...+- ..-...+.....+.+.+.+... ....-++|||.|+-.-..+.++...+++..++.+...
T Consensus 88 ~G~l~~~~~~~--~~~~~~~~~~~~~L~~l~~~~k----~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~---- 157 (235)
T COG2874 88 SGRLLFFPVNL--EPVNWGRRSARKLLDLLLEFIK----RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDL---- 157 (235)
T ss_pred cceeEEEEecc--cccccChHHHHHHHHHHHhhHH----hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhC----
Confidence 2 111111000 0000112122333333333332 3455699999999886543232233344444444432
Q ss_pred CCCceeeeeeeccc
Q psy9384 195 FPPWLFLFCTVRRQ 208 (978)
Q Consensus 195 ~~~~~~~~~~sr~~ 208 (978)
+-.+++|..|.
T Consensus 158 ---gKvIilTvhp~ 168 (235)
T COG2874 158 ---GKVIILTVHPS 168 (235)
T ss_pred ---CCEEEEEeChh
Confidence 22455666554
No 415
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.60 E-value=0.43 Score=48.02 Aligned_cols=26 Identities=35% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||...+.--+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999988654
No 416
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.58 E-value=0.052 Score=55.38 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+..|.|+||+|||++...++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 69999999999998888888554
No 417
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.57 E-value=0.049 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+++.|.|++||||||++..++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999886654
No 418
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.56 E-value=0.051 Score=57.50 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...|++.- .. ....|+|+|+||+|||.|+..|...+.
T Consensus 172 ~~~f~~~f---~~-~~~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 172 CKNFIENF---DK-NNENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred HHHHHHHH---hc-cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 34566642 11 236699999999999999999986653
No 419
>KOG2170|consensus
Probab=93.56 E-value=0.16 Score=50.99 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++..+.++ .+.+.-+|-++|.+|+||+.++..|++++
T Consensus 98 lk~~~~n~---~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 98 LKSHWANP---NPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHhcCC---CCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 46666665 44556678889999999999999999764
No 420
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.55 E-value=0.096 Score=60.51 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=52.4
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..+.|.+...+.+...+... +...++|+||+|||+++..+.+.+-.. .-..+.|+. + ..
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~~~--------~~~~~~~~~-n----p~ 89 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLPKE--------ELQDILVYP-N----PE 89 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcChH--------hHHHheEee-C----CC
Confidence 45678888888888887752 478899999999999999998765321 012233333 2 33
Q ss_pred cCHHHHHHHHHHHHhcC
Q psy9384 90 FSVQNFIQSLVEQFSSS 106 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~ 106 (978)
.++..+++.++.++-.+
T Consensus 90 ~~~~~~~~~v~~~~G~~ 106 (637)
T PRK13765 90 DPNNPKIRTVPAGKGKQ 106 (637)
T ss_pred cchHHHHHHHHHhcCHH
Confidence 46677788888766654
No 421
>PRK06921 hypothetical protein; Provisional
Probab=93.55 E-value=0.06 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
....++|+|+||+|||.|+..|+..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 346799999999999999999987664
No 422
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.91 Score=48.99 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.-...|.+.+. .....|+|+|+.|+|||-|+..+.....
T Consensus 100 aa~~~va~~~g----~~~nplfi~G~~GlGKTHLl~Aign~~~ 138 (408)
T COG0593 100 AAAKAVAENPG----GAYNPLFIYGGVGLGKTHLLQAIGNEAL 138 (408)
T ss_pred HHHHHHHhccC----CcCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34577777541 1467899999999999999999985543
No 423
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.54 E-value=0.043 Score=53.95 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++|.|+|||||||++..+.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999999854
No 424
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.50 E-value=0.15 Score=53.31 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..++.-|+|+||+|||+|+-.++.+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55688899999999999999887553
No 425
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.49 E-value=0.064 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++.|.|++|||||+|+..+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999754
No 426
>PRK13975 thymidylate kinase; Provisional
Probab=93.48 E-value=0.047 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.179 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+|.|.+||||||+++.+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999997764
No 427
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.48 E-value=0.058 Score=53.08 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHh
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii 58 (978)
+..++|+|.||+|||++++.+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4679999999999999999885
No 428
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.46 E-value=0.94 Score=47.68 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=29.5
Q ss_pred cchH---HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 17 WAFV---KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 17 w~~~---~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
|+-+ +++..+...+ -..-+.++|+.|.||+.++..++..+.
T Consensus 7 Wl~~~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 7 WLVPVWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred cHHHHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 5554 4555555432 445799999999999999999986653
No 429
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.46 E-value=0.45 Score=47.82 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||+..+..-+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999986543
No 430
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.44 E-value=0.05 Score=57.87 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++++.|.|||||||+++.+.+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998554
No 431
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.44 E-value=0.45 Score=46.84 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||.+.+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986553
No 432
>PRK14526 adenylate kinase; Provisional
Probab=93.44 E-value=0.048 Score=53.79 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++|.|+|||||||+++.+...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~ 23 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNE 23 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998744
No 433
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.43 E-value=0.55 Score=56.21 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=30.3
Q ss_pred cccccccchHHH----HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 11 KFFCREWAFVKL----VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 11 ~f~~r~w~~~~~----~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.|+.-.++++ +.+.. ...-++|+|.||+|||+++..|-..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~--------~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQ--------SDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhC--------CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 466776555543 44433 3457999999999999999999754
No 434
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.43 E-value=0.043 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++|+|+||+|||+++..++..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36889999999999999998554
No 435
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.43 E-value=0.39 Score=48.08 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||++.+..-+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 436
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.43 E-value=0.51 Score=50.04 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||++.+..-+.
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986543
No 437
>PRK06217 hypothetical protein; Validated
Probab=93.43 E-value=0.05 Score=52.78 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+|.|.|||||||+++.+.+.+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6889999999999999998665
No 438
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.42 E-value=0.065 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++|++|.||+|||++++.+...+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998554
No 439
>PRK00625 shikimate kinase; Provisional
Probab=93.40 E-value=0.048 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.|.|.|||||||++..+.+++
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998554
No 440
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.37 E-value=0.58 Score=48.30 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||+..+.--+.
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 456888999999999999999986543
No 441
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.37 E-value=0.45 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||++.+..-+.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986543
No 442
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.37 E-value=0.54 Score=47.29 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||++.+...+.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986543
No 443
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.37 E-value=0.1 Score=56.87 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy9384 21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAES 64 (978)
Q Consensus 21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~ 64 (978)
.|.+++.. ..|++.++|+.||||||.+-.++..+.+.
T Consensus 249 ~~~~~~~~-------p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 249 RLLRLLNR-------PQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHHHHHhC-------CCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 57888887 55899999999999999999998776553
No 444
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.36 E-value=0.057 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++.|.|+||||||||+..+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999987664
No 445
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.35 E-value=0.041 Score=53.93 Aligned_cols=25 Identities=40% Similarity=0.363 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
+.-|.|++||||||+++.+...|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4568999999999999999987764
No 446
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.35 E-value=0.075 Score=53.67 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=31.5
Q ss_pred chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
+++++..|...+ +..-++-|.|++|+|||||+..+...+..
T Consensus 19 l~~~~~~~~~~~-----~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 19 LLRRLAALQAEP-----QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred HHHHHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 445667777642 35668889999999999999999977653
No 447
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.34 E-value=0.24 Score=58.28 Aligned_cols=23 Identities=48% Similarity=0.768 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+-+.|+|+||+|||++++.+...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999744
No 448
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.33 E-value=0.07 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.++..|.|.||+|||++++.+++.+
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 55799999999999999999988554
No 449
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.33 E-value=0.077 Score=45.15 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
...+..|.|++|||||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45689999999999999999976
No 450
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.31 E-value=0.26 Score=62.28 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++...++|+||||||.||+.++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999554
No 451
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.31 E-value=0.72 Score=46.09 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||+..+.-.+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999987554
No 452
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=93.31 E-value=0.38 Score=52.87 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=39.5
Q ss_pred cccch--HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHH-HHhcCCCCCchhhhhhhhccceeeeccc
Q psy9384 15 REWAF--VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCK-EIVFPSAESSFSQQHNLRKKLLAYHFCQ 83 (978)
Q Consensus 15 r~w~~--~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~-~ii~~l~~~~~~~~~~~~~~~~~~ff~~ 83 (978)
|.|-. +.+.+|+.+.. ......+.+.|.||-|||+=+. ++.-+|..-. ...-.+||||+..
T Consensus 103 RVW~iVk~~l~~W~~~~~---~~~~~p~vlIGTPGIGKS~~~GS~LLyqLLHy~-----~~~L~vVaYfv~~ 166 (439)
T PF07999_consen 103 RVWHIVKRDLDRWLSGRG---ERDPRPFVLIGTPGIGKSFGTGSYLLYQLLHYD-----AEKLPVVAYFVGG 166 (439)
T ss_pred hhHHHHHHHHHHHhccCC---CCCCCceEEEecCCcCccccchhhhhhhhhcCC-----hhhccEEEEEEec
Confidence 35655 46999998742 2234567999999999996554 6665554422 1224678888744
No 453
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=93.29 E-value=0.37 Score=54.64 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=62.0
Q ss_pred EEEEEeccccccccCCCcCCCcchhhHHHHHHhc-------cCCCCCceeeeeeecccccchh--hccc-------Cccc
Q psy9384 158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARN-------HHLFPPWLFLFCTVRRQSKSIK--KMFL-------GFHK 221 (978)
Q Consensus 158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~~sr~~~~~i~--~~~~-------~~~~ 221 (978)
-++++|.+|+.+..- +. .|.+++... ....+.++++|++|+++..... ..|+ ....
T Consensus 235 gtl~l~~i~~l~~~~----q~----~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~ 306 (445)
T TIGR02915 235 GTLFLDEIGDLPLNL----QA----KLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEIS 306 (445)
T ss_pred CEEEEechhhCCHHH----HH----HHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccce
Confidence 479999999997431 22 333344322 1122346899999988754321 1121 1224
Q ss_pred cccccccchhhhhHHHHHHHHHhcCchHHHh-hcCcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384 222 LSLDDLRKSHVIRDMQQYILLRLASEESLRV-HMNRDTAEMLNQLHIKS-NGCFLYLERVLDGIS 284 (978)
Q Consensus 222 i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~-~~~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~ 284 (978)
|.+..+.. ..+||...+..-+.+...... ......++..+.|.... .|+..=++.+++.+.
T Consensus 307 i~lPpLr~--R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~ 369 (445)
T TIGR02915 307 ITIPPLRS--RDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAV 369 (445)
T ss_pred ecCCCchh--chhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 55544333 457887777766654422211 12234455556665543 666666666665543
No 454
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.25 E-value=0.71 Score=46.74 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|..|||||||++.+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999886553
No 455
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.24 E-value=0.061 Score=54.83 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+.+|+.+ ..-+.++|+||+|||.|+..+...+.
T Consensus 98 ~~~~~~~--------~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 98 LVEFFER--------GENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred HHHHhcc--------CCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 5678874 24699999999999999999986654
No 456
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.22 E-value=0.78 Score=51.18 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=50.5
Q ss_pred CCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhH
Q psy9384 194 LFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCF 273 (978)
Q Consensus 194 ~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~f 273 (978)
.-|++|++|+.+.-+.....-.++.+..+++..++. ++|..++..-+... .-..-++....+...|+|..
T Consensus 145 EPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~----~~I~~~L~~i~~~E------~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 145 EPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDL----EEIAKHLAAILDKE------GINIEEDALSLIARAAEGSL 214 (515)
T ss_pred cCccCeEEEEecCCcCcCchhhhhccccccccCCCH----HHHHHHHHHHHHhc------CCccCHHHHHHHHHHcCCCh
Confidence 456788888877554332223345566667655554 68888877655522 12233456788888899987
Q ss_pred HHHHHHHhhhh
Q psy9384 274 LYLERVLDGIS 284 (978)
Q Consensus 274 lw~~~~~~~l~ 284 (978)
.=+-..+|.+-
T Consensus 215 RDalslLDq~i 225 (515)
T COG2812 215 RDALSLLDQAI 225 (515)
T ss_pred hhHHHHHHHHH
Confidence 76666666654
No 457
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.21 E-value=0.8 Score=54.46 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=65.4
Q ss_pred cEEEEEeccccccccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hcccC-------cc
Q psy9384 157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMFLG-------FH 220 (978)
Q Consensus 157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~~~-------~~ 220 (978)
.-+++||.+|+.+..- +. .|.+++.... ...+..+++|++|.+...... ..|+. ..
T Consensus 417 ~GtL~ldei~~l~~~~----Q~----~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~ 488 (638)
T PRK11388 417 GGTLFLEKVEYLSPEL----QS----ALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAF 488 (638)
T ss_pred CCEEEEcChhhCCHHH----HH----HHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhcee
Confidence 3489999999997431 22 3444443221 112236788888877653222 12221 12
Q ss_pred ccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384 221 KLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKS-NGCFLYLERVLDGIS 284 (978)
Q Consensus 221 ~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~ 284 (978)
.|.+..+.. -.+||...+..-+.+.............+..+.|.... .|+..=++-+++.+.
T Consensus 489 ~i~lPpLre--R~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~ 551 (638)
T PRK11388 489 EITIPPLRM--RREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLA 551 (638)
T ss_pred EEeCCChhh--hhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 344543333 34788888887776543221112235566777777765 788777776666643
No 458
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.16 E-value=0.6 Score=50.16 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=37.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhh---------hhhhhccceeeeccccCCCCccCHHHHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQ---------QHNLRKKLLAYHFCQSYDLATFSVQNFIQS 98 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~---------~~~~~~~~~~~ff~~~~~~~~~~~~~~l~s 98 (978)
.+.++-|.|+.|+|||||+..+..-+...+..- ........++|.|=+.......++...++.
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~ 137 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV 137 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHH
Confidence 457899999999999999999986554322100 001123456766643333344566655553
No 459
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.13 E-value=0.85 Score=45.49 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|..|+|||||...+..-+.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986543
No 460
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.13 E-value=0.05 Score=53.12 Aligned_cols=21 Identities=43% Similarity=0.945 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..|.|+||+|||+|+..++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999988744
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.11 E-value=0.063 Score=53.28 Aligned_cols=27 Identities=37% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++-|.|++|||||||+..+...+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446788999999999999999986553
No 462
>PRK04182 cytidylate kinase; Provisional
Probab=93.08 E-value=0.063 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+|.|.||||||+++..+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998554
No 463
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.06 E-value=0.056 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++|.|.||||||++++.+.+.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999997443
No 464
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.54 Score=46.91 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||++.+..-+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986543
No 465
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.02 E-value=0.76 Score=46.75 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++-|.|..|+|||||++.+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 466
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.01 E-value=0.043 Score=54.32 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+...++=|+|+||+|||||+..++..+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 4567899999999999999999996654
No 467
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.00 E-value=0.068 Score=46.90 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
.+.++.++|+-|+|||++++.++..+..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5579999999999999999999988743
No 468
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.99 E-value=0.058 Score=50.23 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+++|.|.+|+|||||+..++..+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997764
No 469
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.99 E-value=0.16 Score=54.07 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=36.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHh
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFS 104 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~ 104 (978)
+.++-..|.|+||+|||||+..|....... ...+..|++-.+ +..+.+..+.+.+...++
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n---------hFDv~~~VvLIg-ER~~EVtdiqrsIlg~vv 226 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN---------HPEVHLIVLLID-ERPEEVTDMQRSVKGEVV 226 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh---------cCCeEEEEEEeC-CchhHHHHHHHHhcCcEE
Confidence 345556777999999999999998665431 111222333322 233467777777765444
No 470
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.98 E-value=0.27 Score=49.54 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+..|.|.||+|||+++..++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~ 39 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQ 39 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999988744
No 471
>PRK05439 pantothenate kinase; Provisional
Probab=92.97 E-value=0.083 Score=55.00 Aligned_cols=38 Identities=18% Similarity=0.026 Sum_probs=27.3
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+++..+ ..+..-+.-|.|+|||||||++..+.+.+.
T Consensus 74 ~~~fl~~~---~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 74 LEQFLGKN---GQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHhccc---CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45566532 233445777899999999999999986553
No 472
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.96 E-value=0.52 Score=50.33 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=32.7
Q ss_pred cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++++++.+..++..+.. .....++..|.|++|+||||++..+...+
T Consensus 220 ~~~l~~~l~~~l~~~~~-~~~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 220 IEYILEDMRSHFNTENV-FEKEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHhccccc-cccCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45666677777764311 11234788999999999999999998554
No 473
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=92.96 E-value=0.53 Score=47.73 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|||||||++.+...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999997554
No 474
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=92.95 E-value=0.48 Score=47.73 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|+|||||...+..-+.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 475
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.95 E-value=0.26 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+..+.|++|+||||++..++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999854
No 476
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.90 E-value=0.061 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.3
Q ss_pred EEEcCCCCcHHHHHHHHhcCC
Q psy9384 41 LIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 41 ~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.|.|||||||+++.+...+
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999998553
No 477
>KOG0729|consensus
Probab=92.90 E-value=0.46 Score=46.49 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCcEEEEEeccccccccC---CCcCCCcchhhHHHHHHhccCCCC-Cceeeeeeecccc
Q psy9384 155 KTSYFILVDSIDETHVTN---KKIYSDKATCSIADLLARNHHLFP-PWLFLFCTVRRQS 209 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~sr~~~ 209 (978)
....+|++|-+|-+...- ....-.++-+...+++.+....-| .++++++.+.|+.
T Consensus 269 kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 269 KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 455788889888875420 000011234556666666543334 5789998886654
No 478
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.87 E-value=0.086 Score=55.61 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...+++|+|.||+|||||+..++..+.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999986654
No 479
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.86 E-value=0.077 Score=51.08 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=19.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..-+.+.|+||+|||++++.+-.-|
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999997544
No 480
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=92.79 E-value=0.41 Score=59.39 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
+++++.|.|.+||||||..-.++.
T Consensus 88 ~~~VviI~GeTGSGKTTqlPq~ll 111 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTTQLPKICL 111 (1294)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998776653
No 481
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.78 E-value=0.45 Score=51.36 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
.+...|..... ....-+.++|+||+|||+++-.+...+..
T Consensus 11 ~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 11 KRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred HHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 35677777431 12335999999999999999999877653
No 482
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.76 E-value=0.085 Score=53.03 Aligned_cols=49 Identities=29% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 33 KPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
..+...++=|+|.||+|||||...++.++.. ....|+----+.+.+.+.
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~---------~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRE---------RGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHH---------CCcEEEEEEECCCCCCCC
Confidence 3456679999999999999999999977743 244455445555544443
No 483
>PRK07667 uridine kinase; Provisional
Probab=92.76 E-value=0.069 Score=52.20 Aligned_cols=27 Identities=30% Similarity=0.059 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...+.-|.|.|||||||++..+.+.+.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445778899999999999999997764
No 484
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.75 E-value=0.75 Score=47.31 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 485
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.74 E-value=0.058 Score=51.89 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
++.|.|.||||||||+..+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999997754
No 486
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.74 E-value=0.079 Score=49.85 Aligned_cols=27 Identities=30% Similarity=0.215 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...++.|.|.+|||||||+..++..+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456899999999999999999997764
No 487
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=92.72 E-value=0.71 Score=46.90 Aligned_cols=26 Identities=31% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||.+.+..-+
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999998654
No 488
>PRK09183 transposase/IS protein; Provisional
Probab=92.71 E-value=0.08 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.|.|+||+|||+|+..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999633
No 489
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.67 E-value=0.069 Score=52.64 Aligned_cols=23 Identities=48% Similarity=0.562 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++-|.|++|||||||+..+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998765
No 490
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.65 E-value=0.83 Score=46.46 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||+..+.-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999998554
No 491
>PRK04132 replication factor C small subunit; Provisional
Probab=92.65 E-value=1.2 Score=53.19 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=67.0
Q ss_pred EEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHH
Q psy9384 158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQ 237 (978)
Q Consensus 158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~ 237 (978)
-++|||-.|-...+. -..|.+++. ..|.++++|+++.+....++...+.+..+.+..... ++|.
T Consensus 632 KVvIIDEaD~Lt~~A--------QnALLk~lE----ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~----~~i~ 695 (846)
T PRK04132 632 KIIFLDEADALTQDA--------QQALRRTME----MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRD----EDIA 695 (846)
T ss_pred EEEEEECcccCCHHH--------HHHHHHHhh----CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCH----HHHH
Confidence 588888888876431 123444443 345577888888776654555555666777755443 5777
Q ss_pred HHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 238 QYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 238 ~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
..+..-.... .-...++....++..|+|....|-..++.+.
T Consensus 696 ~~L~~I~~~E------gi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 696 KRLRYIAENE------GLELTEEGLQAILYIAEGDMRRAINILQAAA 736 (846)
T ss_pred HHHHHHHHhc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6655433311 1122356788999999999999988888765
No 492
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.63 E-value=0.13 Score=52.95 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+++.|+|++||||||++..+++.+.
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 557899999999999999999987753
No 493
>PRK12338 hypothetical protein; Provisional
Probab=92.61 E-value=0.083 Score=54.90 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+++|.|.||+||||++..+...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998654
No 494
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.59 E-value=0.047 Score=55.04 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=19.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC
Q psy9384 42 IIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 42 l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
+.|+|||||||+++.+.+++..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999988754
No 495
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.57 E-value=0.059 Score=55.30 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+++|.|||||||++..+.+++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998665
No 496
>PLN02796 D-glycerate 3-kinase
Probab=92.55 E-value=0.13 Score=54.04 Aligned_cols=47 Identities=21% Similarity=0.101 Sum_probs=29.9
Q ss_pred ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.|+++.+...+..-........-++-|.|.+|||||||+..+...+.
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46666665555211000111234577899999999999999987764
No 497
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.50 E-value=0.071 Score=57.87 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++.|+|.||||||+|+..++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 588999999999999999999877
No 498
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.47 E-value=0.76 Score=46.82 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||++.+.--+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 499
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.47 E-value=0.76 Score=48.69 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=38.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhh---------hhhhccceeeeccccCCCCccCHHHHHHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ---------HNLRKKLLAYHFCQSYDLATFSVQNFIQSLV 100 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~---------~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~ 100 (978)
.+.++-|.|+.|+|||||++.+..-+...+..-. .......++|.+=+..-....++...+....
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~ 105 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFG 105 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHH
Confidence 4468999999999999999999865543221000 0011345777764433334456666655433
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.41 E-value=0.11 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|++|||||+|+..+...+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998664
Done!