Query psy9384
Match_columns 978
No_of_seqs 469 out of 5223
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 17:45:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 4.4E-58 1.5E-62 520.4 45.2 396 368-806 4-399 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 9.1E-58 3.1E-62 517.7 46.2 392 335-762 6-397 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.2E-41 7.6E-46 368.5 35.8 301 377-733 24-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 1E-39 3.5E-44 355.4 35.5 290 342-648 24-326 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 9.7E-40 3.3E-44 358.9 33.8 325 373-745 19-347 (351)
6 3utm_A Tankyrase-1; tankyrase, 100.0 1.7E-39 5.8E-44 357.0 31.5 331 337-715 18-351 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 8.4E-38 2.9E-42 332.3 32.1 267 342-620 4-283 (285)
8 1wdy_A 2-5A-dependent ribonucl 100.0 8.8E-38 3E-42 332.2 31.6 257 377-647 4-277 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 2.6E-37 8.9E-42 339.9 20.6 326 345-729 39-371 (373)
10 2fo1_E LIN-12 protein; beta-ba 100.0 3.1E-37 1E-41 339.3 19.7 322 379-763 38-367 (373)
11 3d9h_A CDNA FLJ77766, highly s 100.0 4.9E-36 1.7E-40 316.5 23.1 259 340-616 12-280 (285)
12 3d9h_A CDNA FLJ77766, highly s 100.0 1E-35 3.6E-40 313.9 23.2 253 375-645 12-275 (285)
13 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-35 4.2E-40 309.5 21.0 249 377-643 2-258 (261)
14 2xai_A ASB-9, ankyrin repeat a 100.0 7.4E-35 2.5E-39 303.7 22.0 250 342-611 2-259 (261)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 6.2E-35 2.1E-39 302.9 21.3 226 371-610 3-243 (253)
16 3ljn_A Hypothetical protein; a 100.0 6.3E-36 2.2E-40 329.2 14.5 263 368-646 10-312 (364)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 3.4E-34 1.2E-38 297.3 23.4 231 335-581 2-247 (253)
18 3ljn_A Hypothetical protein; a 100.0 1.7E-35 5.9E-40 325.8 14.2 264 335-616 12-315 (364)
19 3b7b_A Euchromatic histone-lys 100.0 1E-33 3.4E-38 291.3 25.9 222 370-605 3-225 (237)
20 1k1a_A B-cell lymphoma 3-encod 100.0 4.4E-34 1.5E-38 295.0 20.4 226 372-611 3-237 (241)
21 3b7b_A Euchromatic histone-lys 100.0 7E-33 2.4E-37 285.0 27.2 215 478-745 3-218 (237)
22 3aji_A 26S proteasome non-ATPa 100.0 2.8E-33 9.4E-38 286.7 22.8 226 342-582 5-230 (231)
23 1oy3_D Transcription factor in 100.0 1.9E-33 6.6E-38 298.0 20.5 264 371-681 2-269 (282)
24 1oy3_D Transcription factor in 100.0 2.5E-33 8.7E-38 297.0 20.9 251 336-633 2-268 (282)
25 1k1a_A B-cell lymphoma 3-encod 100.0 1.2E-32 4.2E-37 284.1 25.4 231 551-806 3-238 (241)
26 3aji_A 26S proteasome non-ATPa 100.0 4.4E-33 1.5E-37 285.2 21.5 226 375-614 3-229 (231)
27 4b93_B Ankyrin repeat domain-c 100.0 1E-33 3.6E-38 294.3 14.1 226 375-614 8-243 (269)
28 3kea_A K1L; tropism, ANK repea 100.0 1.8E-33 6.3E-38 296.5 15.5 242 353-621 9-252 (285)
29 4b93_B Ankyrin repeat domain-c 100.0 1.8E-33 6.1E-38 292.6 13.2 229 339-583 7-245 (269)
30 3eu9_A Huntingtin-interacting 100.0 6E-32 2.1E-36 278.9 24.4 232 372-616 3-236 (240)
31 1s70_B 130 kDa myosin-binding 100.0 4E-32 1.4E-36 290.3 22.2 279 629-967 4-285 (299)
32 3kea_A K1L; tropism, ANK repea 100.0 1.6E-32 5.6E-37 289.2 17.2 233 390-648 12-246 (285)
33 1s70_B 130 kDa myosin-binding 100.0 2.2E-32 7.6E-37 292.3 18.1 275 349-646 4-287 (299)
34 3eu9_A Huntingtin-interacting 100.0 1.9E-31 6.6E-36 275.1 23.0 232 337-584 3-237 (240)
35 1sw6_A Regulatory protein SWI6 100.0 9.2E-34 3.1E-38 305.2 4.4 291 538-927 33-327 (327)
36 2f8y_A Notch homolog 1, transl 100.0 1.6E-31 5.5E-36 271.9 20.5 213 354-582 2-216 (223)
37 2dzn_A Probable 26S proteasome 100.0 1.7E-31 5.9E-36 272.8 20.3 207 378-598 2-216 (228)
38 2f8y_A Notch homolog 1, transl 100.0 2.4E-31 8.3E-36 270.6 21.2 214 389-616 2-217 (223)
39 2dzn_A Probable 26S proteasome 100.0 1.3E-30 4.4E-35 266.3 23.3 209 486-745 2-216 (228)
40 1sw6_A Regulatory protein SWI6 100.0 5.5E-32 1.9E-36 291.3 9.1 258 469-745 35-324 (327)
41 2rfa_A Transient receptor pote 100.0 2.2E-29 7.4E-34 257.8 20.0 193 378-584 3-224 (232)
42 4gpm_A Engineered protein OR26 100.0 4.5E-29 1.5E-33 238.1 20.3 159 345-514 6-164 (169)
43 1ikn_D Protein (I-kappa-B-alph 100.0 5.4E-30 1.8E-34 262.9 13.4 211 338-562 3-224 (236)
44 3hra_A Ankyrin repeat family p 100.0 1.9E-28 6.5E-33 244.6 22.9 196 376-580 3-201 (201)
45 1ikn_D Protein (I-kappa-B-alph 100.0 1.5E-29 5E-34 259.6 13.3 219 552-793 3-228 (236)
46 2rfa_A Transient receptor pote 100.0 2.9E-28 9.9E-33 249.4 22.9 203 556-769 2-220 (232)
47 4gpm_A Engineered protein OR26 100.0 1.5E-28 5.3E-33 234.3 18.8 159 380-552 6-164 (169)
48 3hra_A Ankyrin repeat family p 100.0 2E-27 6.9E-32 237.1 24.2 192 555-769 3-201 (201)
49 2etb_A Transient receptor pote 100.0 1.6E-28 5.6E-33 255.3 12.0 194 377-582 1-246 (256)
50 2etb_A Transient receptor pote 100.0 3.6E-28 1.2E-32 252.7 13.6 193 342-550 1-247 (256)
51 2pnn_A Transient receptor pote 100.0 1.3E-28 4.6E-33 258.6 10.3 205 369-587 4-264 (273)
52 2pnn_A Transient receptor pote 99.9 7.5E-28 2.6E-32 252.9 12.8 215 400-647 2-257 (273)
53 2aja_A Ankyrin repeat family p 99.9 1E-28 3.5E-33 266.8 -0.6 284 560-937 68-370 (376)
54 3v30_A DNA-binding protein rfx 99.9 3.8E-26 1.3E-30 221.2 16.1 169 343-522 2-171 (172)
55 3jxi_A Vanilloid receptor-rela 99.9 1.3E-26 4.3E-31 241.8 13.4 201 341-583 3-251 (260)
56 2rfm_A Putative ankyrin repeat 99.9 7.3E-26 2.5E-30 223.6 17.0 162 337-509 29-190 (192)
57 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.9E-25 9.9E-30 214.0 20.1 158 341-509 12-169 (169)
58 3jxi_A Vanilloid receptor-rela 99.9 5E-26 1.7E-30 237.3 14.7 205 555-769 3-248 (260)
59 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.6E-25 5.4E-30 214.5 16.6 158 342-511 4-162 (162)
60 3v31_A Ankyrin repeat family A 99.9 1.6E-25 5.5E-30 215.5 16.7 160 342-512 2-161 (167)
61 4hbd_A KN motif and ankyrin re 99.9 4E-26 1.4E-30 238.9 11.1 188 345-546 78-272 (276)
62 3v30_A DNA-binding protein rfx 99.9 3.9E-25 1.3E-29 214.0 17.1 169 557-740 2-171 (172)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 8E-25 2.7E-29 210.9 18.7 159 375-547 11-169 (169)
64 4hbd_A KN motif and ankyrin re 99.9 2E-25 6.7E-30 233.7 15.5 188 521-727 78-274 (276)
65 3f6q_A Integrin-linked protein 99.9 3.1E-25 1.1E-29 216.1 15.9 164 343-516 5-168 (179)
66 2rfm_A Putative ankyrin repeat 99.9 8.8E-25 3E-29 215.8 19.1 161 551-725 29-189 (192)
67 1ihb_A P18-INK4C(INK6), cyclin 99.9 4E-25 1.4E-29 211.7 15.1 157 377-548 4-161 (162)
68 2aja_A Ankyrin repeat family p 99.9 1.6E-27 5.6E-32 257.4 -1.9 278 625-969 67-371 (376)
69 1awc_B Protein (GA binding pro 99.9 1.5E-24 5.2E-29 205.1 18.1 150 344-505 3-152 (153)
70 3twr_A Tankyrase-2; ankyrin re 99.9 4.2E-25 1.4E-29 212.2 14.0 157 376-547 6-163 (165)
71 3f6q_A Integrin-linked protein 99.9 1.8E-24 6.3E-29 210.7 18.7 166 377-556 4-170 (179)
72 3v31_A Ankyrin repeat family A 99.9 3E-24 1E-28 206.6 19.3 156 556-725 2-157 (167)
73 2vge_A RELA-associated inhibit 99.9 1.5E-26 5.2E-31 234.0 1.8 186 665-901 16-206 (229)
74 3twr_A Tankyrase-2; ankyrin re 99.9 2.2E-24 7.6E-29 207.1 16.4 161 339-510 4-164 (165)
75 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.2E-24 1.1E-28 203.9 17.0 154 343-508 2-155 (156)
76 1awc_B Protein (GA binding pro 99.9 1.2E-23 4E-28 199.0 19.2 149 559-722 4-152 (153)
77 2vge_A RELA-associated inhibit 99.9 8.4E-25 2.9E-29 221.2 9.1 155 606-789 1-161 (229)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.5E-24 5.2E-29 222.0 9.6 214 588-857 3-225 (239)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5E-23 1.7E-27 195.6 18.0 152 558-725 3-155 (156)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.3E-24 1.1E-28 219.5 9.1 175 341-527 3-189 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 2.9E-23 9.8E-28 191.6 11.6 134 368-511 2-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 6.2E-23 2.1E-27 194.5 10.3 143 372-524 6-149 (156)
83 3t8k_A Uncharacterized protein 99.9 1.9E-23 6.4E-28 202.9 5.9 163 343-513 6-181 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 2.2E-22 7.6E-27 190.6 9.6 145 337-493 6-151 (156)
85 1d9s_A Cyclin-dependent kinase 99.9 9.3E-22 3.2E-26 181.4 13.2 133 580-728 2-135 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.8E-21 9.7E-26 176.0 15.8 126 377-511 1-126 (126)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 1.8E-21 6.1E-26 179.5 14.1 125 376-509 12-136 (136)
88 2jab_A H10-2-G3; HER2, darpin, 99.8 7.5E-21 2.6E-25 175.3 14.7 126 340-476 11-136 (136)
89 3t8k_A Uncharacterized protein 99.8 1.6E-21 5.5E-26 189.2 9.5 169 378-584 6-181 (186)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.8 1.9E-20 6.6E-25 170.4 15.7 126 342-478 1-126 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.8 2.1E-21 7.3E-26 179.4 7.9 128 373-509 5-132 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.8 4.6E-20 1.6E-24 170.4 11.8 129 613-762 1-129 (137)
93 3deo_A Signal recognition part 99.8 5.5E-20 1.9E-24 179.4 12.9 141 339-508 40-181 (183)
94 3ui2_A Signal recognition part 99.8 1.4E-19 4.6E-24 185.4 13.5 143 340-511 42-185 (244)
95 3aaa_C Myotrophin, protein V-1 99.8 6.2E-20 2.1E-24 165.8 9.6 108 377-493 6-113 (123)
96 3deo_A Signal recognition part 99.8 7E-20 2.4E-24 178.6 9.1 139 375-545 41-180 (183)
97 3ehr_A Osteoclast-stimulating 99.8 4.3E-20 1.5E-24 186.8 7.5 135 374-517 69-204 (222)
98 2b0o_E UPLC1; arfgap, structur 99.8 1.7E-19 5.8E-24 190.0 10.5 139 344-499 152-299 (301)
99 2b0o_E UPLC1; arfgap, structur 99.8 6E-19 2.1E-23 185.8 14.1 136 377-527 150-294 (301)
100 3aaa_C Myotrophin, protein V-1 99.8 7.5E-19 2.6E-23 158.6 12.6 119 620-758 4-122 (123)
101 3ui2_A Signal recognition part 99.8 2.7E-19 9.3E-24 183.1 10.8 111 375-495 42-153 (244)
102 3ehr_A Osteoclast-stimulating 99.8 1.5E-19 5E-24 182.9 7.4 138 337-485 67-205 (222)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.8E-18 1.3E-22 145.0 11.9 93 377-478 1-93 (93)
104 3jue_A Arfgap with coiled-coil 99.7 4E-18 1.4E-22 183.2 12.6 126 375-509 196-324 (368)
105 3jue_A Arfgap with coiled-coil 99.7 7.4E-18 2.5E-22 181.1 13.2 145 340-495 196-346 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.7 1.8E-17 6E-22 188.7 15.9 134 379-527 133-275 (497)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.7 2.5E-17 8.5E-22 139.9 12.8 93 342-436 1-93 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.7 1.3E-17 4.5E-22 189.7 14.5 134 345-495 134-276 (497)
109 1dcq_A PYK2-associated protein 99.7 2.5E-17 8.5E-22 171.4 14.9 125 344-479 131-264 (278)
110 1dcq_A PYK2-associated protein 99.7 3.4E-17 1.2E-21 170.4 14.4 124 379-511 131-263 (278)
111 2l6b_A NR1C; ankyrin, consensu 99.7 6.9E-18 2.4E-22 150.2 7.5 108 373-489 4-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 4E-17 1.4E-21 145.3 7.6 109 338-448 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 3E-15 1E-19 131.5 9.7 87 373-459 19-105 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 1.6E-14 5.6E-19 126.7 11.2 94 335-430 16-109 (110)
115 2chg_A Replication factor C sm 98.8 9.6E-08 3.3E-12 96.0 14.9 192 10-284 17-208 (226)
116 1njg_A DNA polymerase III subu 98.7 3.4E-08 1.2E-12 101.1 11.3 209 10-284 23-232 (250)
117 2v1u_A Cell division control p 98.6 5E-07 1.7E-11 99.3 17.9 225 10-283 19-252 (387)
118 2qen_A Walker-type ATPase; unk 98.6 2.4E-07 8.2E-12 100.3 14.7 233 3-284 5-250 (350)
119 2a5y_B CED-4; apoptosis; HET: 98.5 9.6E-07 3.3E-11 101.1 17.1 207 12-284 131-341 (549)
120 1w5s_A Origin recognition comp 98.5 4.4E-07 1.5E-11 100.6 13.2 229 10-283 22-269 (412)
121 1sxj_B Activator 1 37 kDa subu 98.4 1.1E-06 3.6E-11 93.9 12.8 193 10-284 21-213 (323)
122 2fna_A Conserved hypothetical 98.4 2.9E-06 1E-10 91.9 16.4 230 5-284 8-254 (357)
123 1z6t_A APAF-1, apoptotic prote 98.4 9.7E-07 3.3E-11 102.9 13.2 213 4-285 118-333 (591)
124 1fnn_A CDC6P, cell division co 98.4 3.3E-06 1.1E-10 92.7 16.4 218 10-283 17-250 (389)
125 2qby_A CDC6 homolog 1, cell di 98.4 1.4E-06 4.9E-11 95.6 12.7 220 10-283 20-248 (386)
126 2qby_B CDC6 homolog 3, cell di 98.4 1.5E-06 5.2E-11 95.2 12.9 220 10-283 20-248 (384)
127 2chq_A Replication factor C sm 98.3 1.7E-06 5.9E-11 92.0 10.1 192 10-284 17-208 (319)
128 1jr3_A DNA polymerase III subu 98.3 8.6E-06 3E-10 88.7 15.8 210 8-283 14-224 (373)
129 1iqp_A RFCS; clamp loader, ext 98.3 3.1E-06 1.1E-10 90.4 11.2 194 8-284 23-216 (327)
130 3sfz_A APAF-1, apoptotic pepti 98.2 9.5E-06 3.3E-10 104.2 16.7 213 5-285 119-333 (1249)
131 1jbk_A CLPB protein; beta barr 98.2 9.3E-06 3.2E-10 79.0 12.5 48 8-61 20-67 (195)
132 3u61_B DNA polymerase accessor 98.2 1.5E-05 5.2E-10 84.6 14.6 193 10-284 26-220 (324)
133 1sxj_A Activator 1 95 kDa subu 98.1 1.1E-05 3.7E-10 91.3 12.6 207 9-284 38-256 (516)
134 3bos_A Putative DNA replicatio 98.1 1.3E-05 4.3E-10 81.3 10.2 46 10-61 28-76 (242)
135 3te6_A Regulatory protein SIR3 98.0 7.8E-06 2.7E-10 84.4 7.8 164 36-246 44-213 (318)
136 3pvs_A Replication-associated 98.0 4.4E-05 1.5E-09 83.9 13.8 188 10-284 26-219 (447)
137 1sxj_D Activator 1 41 kDa subu 98.0 3.5E-05 1.2E-09 83.1 13.0 203 9-283 36-238 (353)
138 3uk6_A RUVB-like 2; hexameric 98.0 0.00013 4.5E-09 79.0 16.8 48 11-62 45-95 (368)
139 2p65_A Hypothetical protein PF 97.9 2.3E-05 7.8E-10 75.6 9.1 48 8-61 20-67 (187)
140 1sxj_E Activator 1 40 kDa subu 97.9 6.7E-05 2.3E-09 80.9 12.1 107 156-284 134-241 (354)
141 1sxj_C Activator 1 40 kDa subu 97.8 0.00011 3.8E-09 78.4 13.5 189 12-283 27-215 (340)
142 1vt4_I APAF-1 related killer D 97.8 7.5E-05 2.6E-09 87.7 12.7 238 10-313 128-368 (1221)
143 3pfi_A Holliday junction ATP-d 97.8 0.00023 7.9E-09 76.0 14.2 51 10-61 29-79 (338)
144 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.0004 1.4E-08 73.0 15.4 25 37-61 45-69 (322)
145 1hqc_A RUVB; extended AAA-ATPa 97.7 0.00027 9.1E-09 75.0 13.9 191 7-284 9-215 (324)
146 1a5t_A Delta prime, HOLB; zinc 97.7 0.00035 1.2E-08 74.0 14.4 101 155-282 107-207 (334)
147 3d8b_A Fidgetin-like protein 1 97.7 0.00066 2.3E-08 72.6 15.7 51 10-60 84-140 (357)
148 3eie_A Vacuolar protein sortin 97.6 0.00052 1.8E-08 72.4 14.4 50 11-60 19-74 (322)
149 2bjv_A PSP operon transcriptio 97.6 0.00041 1.4E-08 71.0 12.6 210 11-283 7-236 (265)
150 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.0052 1.8E-07 62.6 20.6 51 10-60 6-62 (262)
151 3b9p_A CG5977-PA, isoform A; A 97.6 0.0012 4E-08 69.0 15.8 52 10-61 21-78 (297)
152 3syl_A Protein CBBX; photosynt 97.5 0.00026 8.7E-09 74.6 10.2 111 158-284 132-259 (309)
153 3vfd_A Spastin; ATPase, microt 97.5 0.00075 2.6E-08 73.4 13.8 50 11-60 116-171 (389)
154 4b4t_K 26S protease regulatory 97.5 0.0011 3.7E-08 71.4 14.5 25 36-60 205-229 (428)
155 2zan_A Vacuolar protein sortin 97.5 0.00081 2.8E-08 74.2 13.3 50 12-61 136-191 (444)
156 4b4t_L 26S protease subunit RP 97.4 0.00092 3.1E-08 72.1 13.0 25 36-60 214-238 (437)
157 3n70_A Transport activator; si 97.4 0.0003 1E-08 64.1 8.0 47 11-61 2-48 (145)
158 2qp9_X Vacuolar protein sortin 97.4 0.0019 6.6E-08 68.8 15.0 50 11-60 52-107 (355)
159 3h4m_A Proteasome-activating n 97.4 0.00072 2.4E-08 70.1 11.4 52 10-61 17-75 (285)
160 1l8q_A Chromosomal replication 97.4 0.0016 5.3E-08 68.9 14.0 38 20-61 24-61 (324)
161 4b4t_J 26S protease regulatory 97.4 0.0013 4.4E-08 69.6 12.9 25 36-60 181-205 (405)
162 1ojl_A Transcriptional regulat 97.3 0.001 3.5E-08 69.1 11.9 213 10-284 2-232 (304)
163 2z4s_A Chromosomal replication 97.3 0.002 6.7E-08 70.9 14.1 37 20-61 118-154 (440)
164 1qvr_A CLPB protein; coiled co 97.3 0.00089 3.1E-08 80.7 12.3 46 10-61 170-215 (854)
165 4b4t_I 26S protease regulatory 97.3 0.0025 8.6E-08 67.7 13.9 25 36-60 215-239 (437)
166 4b4t_M 26S protease regulatory 97.3 0.0013 4.4E-08 70.9 11.9 25 36-60 214-238 (434)
167 1d2n_A N-ethylmaleimide-sensit 97.2 0.0023 7.9E-08 65.6 12.6 25 36-60 63-87 (272)
168 4b4t_H 26S protease regulatory 97.2 0.0024 8.1E-08 68.6 12.5 25 36-60 242-266 (467)
169 3cf0_A Transitional endoplasmi 97.1 0.0056 1.9E-07 63.6 14.4 26 36-61 48-73 (301)
170 4fcw_A Chaperone protein CLPB; 97.0 0.0017 5.7E-08 68.3 9.2 52 10-61 17-71 (311)
171 2w58_A DNAI, primosome compone 96.9 0.0016 5.4E-08 63.4 7.4 42 18-61 37-78 (202)
172 3m6a_A ATP-dependent protease 96.8 0.0018 6E-08 73.3 7.7 26 36-61 107-132 (543)
173 3hu3_A Transitional endoplasmi 96.7 0.0042 1.4E-07 68.9 9.9 49 12-60 206-261 (489)
174 3pxg_A Negative regulator of g 96.7 0.0033 1.1E-07 69.9 9.0 46 10-61 180-225 (468)
175 1ofh_A ATP-dependent HSL prote 96.7 0.005 1.7E-07 64.6 9.8 51 11-61 16-74 (310)
176 2r62_A Cell division protease 96.6 0.0031 1.1E-07 64.5 7.8 51 10-60 11-67 (268)
177 3t15_A Ribulose bisphosphate c 96.4 0.0069 2.4E-07 62.5 8.8 26 36-61 35-60 (293)
178 1lv7_A FTSH; alpha/beta domain 96.4 0.057 2E-06 54.5 15.4 23 38-60 46-68 (257)
179 3k1j_A LON protease, ATP-depen 96.4 0.0085 2.9E-07 69.0 10.2 43 12-62 43-85 (604)
180 2qgz_A Helicase loader, putati 96.4 0.0036 1.2E-07 65.1 6.4 41 18-61 136-176 (308)
181 3umf_A Adenylate kinase; rossm 96.3 0.0099 3.4E-07 57.6 8.4 27 34-60 26-52 (217)
182 3cf2_A TER ATPase, transitiona 96.2 0.018 6.1E-07 67.2 11.4 26 36-61 237-262 (806)
183 1r6b_X CLPA protein; AAA+, N-t 96.2 0.037 1.3E-06 65.9 14.3 46 10-61 186-231 (758)
184 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.011 3.7E-07 60.3 7.7 23 37-59 123-145 (331)
185 3ec2_A DNA replication protein 96.0 0.0032 1.1E-07 59.8 3.4 44 15-61 19-62 (180)
186 1tue_A Replication protein E1; 96.0 0.0041 1.4E-07 58.6 4.0 37 20-61 46-82 (212)
187 2ce7_A Cell division protein F 96.0 0.037 1.3E-06 60.7 11.9 22 38-59 50-71 (476)
188 2gno_A DNA polymerase III, gam 95.8 0.054 1.8E-06 55.9 11.8 36 18-59 5-40 (305)
189 3co5_A Putative two-component 95.8 0.003 1E-07 57.1 2.0 47 10-60 4-50 (143)
190 1u0j_A DNA replication protein 95.8 0.0073 2.5E-07 60.0 4.7 35 22-60 93-127 (267)
191 3pxi_A Negative regulator of g 95.7 0.019 6.5E-07 68.3 8.9 46 10-61 180-225 (758)
192 2x8a_A Nuclear valosin-contain 95.7 0.1 3.4E-06 53.0 12.9 21 40-60 47-67 (274)
193 1qhx_A CPT, protein (chloramph 95.6 0.005 1.7E-07 58.3 2.8 24 38-61 4-27 (178)
194 1sgw_A Putative ABC transporte 95.5 0.062 2.1E-06 52.0 10.2 27 36-62 34-60 (214)
195 3cf2_A TER ATPase, transitiona 95.3 0.037 1.3E-06 64.6 9.2 25 37-61 511-535 (806)
196 3pxi_A Negative regulator of g 95.1 0.057 2E-06 64.2 10.3 51 11-61 492-545 (758)
197 1vpl_A ABC transporter, ATP-bi 95.1 0.083 2.8E-06 52.8 9.9 27 36-62 40-66 (256)
198 3kb2_A SPBC2 prophage-derived 94.9 0.0076 2.6E-07 56.7 1.7 22 39-60 3-24 (173)
199 4eun_A Thermoresistant glucoki 94.9 0.013 4.6E-07 56.5 3.4 24 36-59 28-51 (200)
200 1kag_A SKI, shikimate kinase I 94.9 0.01 3.5E-07 55.8 2.5 24 37-60 4-27 (173)
201 1ypw_A Transitional endoplasmi 94.9 0.098 3.4E-06 62.1 11.3 50 12-61 206-262 (806)
202 3lw7_A Adenylate kinase relate 94.8 0.014 4.7E-07 55.1 3.1 20 38-57 2-21 (179)
203 1zuh_A Shikimate kinase; alpha 94.8 0.0092 3.1E-07 55.8 1.8 23 38-60 8-30 (168)
204 1zp6_A Hypothetical protein AT 94.8 0.015 5.1E-07 55.7 3.4 25 36-60 8-32 (191)
205 1ly1_A Polynucleotide kinase; 94.7 0.015 5.1E-07 55.1 3.1 22 38-59 3-24 (181)
206 1in4_A RUVB, holliday junction 94.7 0.013 4.4E-07 61.9 2.9 50 10-60 25-74 (334)
207 2rhm_A Putative kinase; P-loop 94.6 0.011 3.7E-07 56.8 1.9 25 36-60 4-28 (193)
208 2dhr_A FTSH; AAA+ protein, hex 94.6 0.1 3.5E-06 57.6 9.8 22 39-60 66-87 (499)
209 3bh0_A DNAB-like replicative h 94.6 0.075 2.6E-06 55.3 8.4 53 36-103 67-119 (315)
210 2vli_A Antibiotic resistance p 94.6 0.011 3.7E-07 56.2 1.8 25 37-61 5-29 (183)
211 3tif_A Uncharacterized ABC tra 94.6 0.1 3.6E-06 51.4 8.9 27 36-62 30-56 (235)
212 1knq_A Gluconate kinase; ALFA/ 94.6 0.02 6.9E-07 53.8 3.6 23 36-58 7-29 (175)
213 2pcj_A ABC transporter, lipopr 94.6 0.099 3.4E-06 51.2 8.7 26 36-61 29-54 (224)
214 2iyv_A Shikimate kinase, SK; t 94.5 0.011 3.8E-07 56.2 1.7 23 38-60 3-25 (184)
215 3t61_A Gluconokinase; PSI-biol 94.5 0.021 7.1E-07 55.3 3.5 24 37-60 18-41 (202)
216 1rz3_A Hypothetical protein rb 94.5 0.027 9.3E-07 54.3 4.4 44 15-61 3-46 (201)
217 4a1f_A DNAB helicase, replicat 94.4 0.076 2.6E-06 55.2 7.8 70 16-105 30-99 (338)
218 1nks_A Adenylate kinase; therm 94.4 0.011 3.9E-07 56.7 1.6 23 39-61 3-25 (194)
219 3gmt_A Adenylate kinase; ssgci 94.4 0.084 2.9E-06 51.2 7.6 22 39-60 10-31 (230)
220 1kht_A Adenylate kinase; phosp 94.4 0.013 4.5E-07 56.1 1.9 24 38-61 4-27 (192)
221 3tui_C Methionine import ATP-b 94.4 0.16 5.4E-06 53.3 10.0 26 36-61 53-78 (366)
222 2qor_A Guanylate kinase; phosp 94.3 0.018 6.3E-07 55.7 2.8 26 36-61 11-36 (204)
223 2cdn_A Adenylate kinase; phosp 94.3 0.016 5.6E-07 56.0 2.4 23 38-60 21-43 (201)
224 2v54_A DTMP kinase, thymidylat 94.3 0.023 7.9E-07 55.0 3.5 25 37-61 4-28 (204)
225 3vaa_A Shikimate kinase, SK; s 94.3 0.015 5.1E-07 56.1 2.1 25 36-60 24-48 (199)
226 3uie_A Adenylyl-sulfate kinase 94.3 0.022 7.6E-07 54.9 3.3 26 36-61 24-49 (200)
227 1iy2_A ATP-dependent metallopr 94.3 0.11 3.8E-06 53.0 8.7 21 40-60 76-96 (278)
228 3iij_A Coilin-interacting nucl 94.2 0.015 5.1E-07 55.1 1.9 25 36-60 10-34 (180)
229 3trf_A Shikimate kinase, SK; a 94.2 0.015 5E-07 55.4 1.9 24 37-60 5-28 (185)
230 1e6c_A Shikimate kinase; phosp 94.2 0.014 4.8E-07 54.8 1.7 23 38-60 3-25 (173)
231 2wwf_A Thymidilate kinase, put 94.2 0.016 5.3E-07 56.7 1.9 26 36-61 9-34 (212)
232 2kjq_A DNAA-related protein; s 94.1 0.022 7.5E-07 51.7 2.7 26 36-61 35-60 (149)
233 1ukz_A Uridylate kinase; trans 94.1 0.023 7.9E-07 55.0 3.0 26 36-61 14-39 (203)
234 3cm0_A Adenylate kinase; ATP-b 94.1 0.015 5.2E-07 55.3 1.6 23 38-60 5-27 (186)
235 1via_A Shikimate kinase; struc 94.1 0.016 5.5E-07 54.5 1.7 22 39-60 6-27 (175)
236 2r44_A Uncharacterized protein 94.0 0.019 6.5E-07 60.7 2.4 44 10-61 27-70 (331)
237 2c95_A Adenylate kinase 1; tra 94.0 0.018 6.3E-07 55.3 2.1 25 36-60 8-32 (196)
238 1y63_A LMAJ004144AAA protein; 94.0 0.03 1E-06 53.1 3.5 25 36-60 9-33 (184)
239 2plr_A DTMP kinase, probable t 94.0 0.018 6.1E-07 56.3 2.0 25 38-62 5-29 (213)
240 1gvn_B Zeta; postsegregational 94.0 0.023 7.8E-07 58.2 2.8 26 36-61 32-57 (287)
241 1tev_A UMP-CMP kinase; ploop, 93.9 0.018 6.1E-07 55.4 1.8 23 38-60 4-26 (196)
242 2p5t_B PEZT; postsegregational 93.9 0.019 6.4E-07 57.8 2.0 26 36-61 31-56 (253)
243 3nbx_X ATPase RAVA; AAA+ ATPas 93.8 0.041 1.4E-06 60.9 4.6 44 10-61 22-65 (500)
244 2yvu_A Probable adenylyl-sulfa 93.8 0.025 8.4E-07 53.9 2.5 26 36-61 12-37 (186)
245 2pbr_A DTMP kinase, thymidylat 93.8 0.019 6.4E-07 55.2 1.7 23 39-61 2-24 (195)
246 2qt1_A Nicotinamide riboside k 93.8 0.034 1.2E-06 53.9 3.5 26 36-61 20-45 (207)
247 3gfo_A Cobalt import ATP-bindi 93.8 0.16 5.5E-06 51.3 8.5 26 36-61 33-58 (275)
248 2pt5_A Shikimate kinase, SK; a 93.8 0.02 6.9E-07 53.4 1.7 22 39-60 2-23 (168)
249 1nn5_A Similar to deoxythymidy 93.7 0.022 7.5E-07 55.8 2.1 25 37-61 9-33 (215)
250 1qf9_A UMP/CMP kinase, protein 93.7 0.023 8E-07 54.4 2.2 25 36-60 5-29 (194)
251 3dl0_A Adenylate kinase; phosp 93.7 0.023 8E-07 55.6 2.2 22 40-61 3-24 (216)
252 1cke_A CK, MSSA, protein (cyti 93.6 0.037 1.3E-06 54.6 3.6 23 38-60 6-28 (227)
253 1kgd_A CASK, peripheral plasma 93.6 0.039 1.3E-06 52.0 3.6 26 36-61 4-29 (180)
254 1aky_A Adenylate kinase; ATP:A 93.6 0.024 8.2E-07 55.7 2.1 24 37-60 4-27 (220)
255 2bwj_A Adenylate kinase 5; pho 93.6 0.023 7.7E-07 54.8 1.8 24 37-60 12-35 (199)
256 3fb4_A Adenylate kinase; psych 93.6 0.022 7.5E-07 55.8 1.7 21 40-60 3-23 (216)
257 2z0h_A DTMP kinase, thymidylat 93.5 0.022 7.6E-07 54.8 1.7 23 39-61 2-24 (197)
258 1qvr_A CLPB protein; coiled co 93.5 0.094 3.2E-06 63.1 7.5 51 11-61 559-612 (854)
259 3rlf_A Maltose/maltodextrin im 93.5 0.14 4.9E-06 53.9 7.9 27 36-62 28-54 (381)
260 2j41_A Guanylate kinase; GMP, 93.5 0.039 1.3E-06 53.5 3.5 26 36-61 5-30 (207)
261 3tlx_A Adenylate kinase 2; str 93.5 0.025 8.6E-07 56.4 2.1 25 36-60 28-52 (243)
262 3tau_A Guanylate kinase, GMP k 93.5 0.044 1.5E-06 53.2 3.7 26 36-61 7-32 (208)
263 2pez_A Bifunctional 3'-phospho 93.4 0.04 1.4E-06 52.0 3.2 26 36-61 4-29 (179)
264 1zd8_A GTP:AMP phosphotransfer 93.4 0.03 1E-06 55.3 2.5 25 37-61 7-31 (227)
265 3a4m_A L-seryl-tRNA(SEC) kinas 93.4 0.035 1.2E-06 56.0 3.0 24 37-60 4-27 (260)
266 2zts_A Putative uncharacterize 93.4 0.063 2.2E-06 53.9 4.9 24 36-59 29-52 (251)
267 2bdt_A BH3686; alpha-beta prot 93.3 0.036 1.2E-06 52.9 2.7 22 38-59 3-24 (189)
268 3sr0_A Adenylate kinase; phosp 93.3 0.032 1.1E-06 53.7 2.3 22 39-60 2-23 (206)
269 3tr0_A Guanylate kinase, GMP k 93.2 0.048 1.7E-06 52.8 3.6 25 36-60 6-30 (205)
270 1g29_1 MALK, maltose transport 93.1 0.27 9.2E-06 52.0 9.3 27 36-62 28-54 (372)
271 1odf_A YGR205W, hypothetical 3 93.1 0.067 2.3E-06 54.7 4.5 41 17-61 15-55 (290)
272 3c8u_A Fructokinase; YP_612366 93.1 0.061 2.1E-06 52.2 4.0 39 19-61 8-46 (208)
273 4gp7_A Metallophosphoesterase; 93.1 0.044 1.5E-06 51.1 2.9 23 36-58 8-30 (171)
274 1zak_A Adenylate kinase; ATP:A 93.1 0.032 1.1E-06 54.9 1.9 26 36-61 4-29 (222)
275 4akg_A Glutathione S-transfera 93.0 0.78 2.7E-05 61.1 15.2 88 155-244 1335-1435(2695)
276 3bk7_A ABC transporter ATP-bin 93.0 0.25 8.6E-06 56.2 9.4 61 36-99 381-441 (607)
277 1z47_A CYSA, putative ABC-tran 92.9 0.37 1.3E-05 50.5 9.9 27 36-62 40-66 (355)
278 1m7g_A Adenylylsulfate kinase; 92.9 0.034 1.2E-06 54.1 1.9 26 36-61 24-49 (211)
279 1yqt_A RNAse L inhibitor; ATP- 92.9 0.22 7.5E-06 55.9 8.7 61 36-99 311-371 (538)
280 4eaq_A DTMP kinase, thymidylat 92.9 0.042 1.4E-06 54.1 2.5 27 36-62 25-51 (229)
281 1ak2_A Adenylate kinase isoenz 92.8 0.039 1.3E-06 54.7 2.2 25 36-60 15-39 (233)
282 2q6t_A DNAB replication FORK h 92.8 0.25 8.4E-06 54.3 8.9 55 36-104 199-253 (444)
283 2jaq_A Deoxyguanosine kinase; 92.7 0.035 1.2E-06 53.7 1.7 23 39-61 2-24 (205)
284 2xb4_A Adenylate kinase; ATP-b 92.7 0.036 1.2E-06 54.5 1.7 22 39-60 2-23 (223)
285 1uj2_A Uridine-cytidine kinase 92.6 0.05 1.7E-06 54.7 2.6 27 36-62 21-47 (252)
286 2c9o_A RUVB-like 1; hexameric 92.5 0.093 3.2E-06 58.0 4.9 48 10-61 37-87 (456)
287 1jjv_A Dephospho-COA kinase; P 92.5 0.061 2.1E-06 52.1 3.1 21 39-59 4-24 (206)
288 3r20_A Cytidylate kinase; stru 92.5 0.043 1.5E-06 53.7 1.9 24 37-60 9-32 (233)
289 1uf9_A TT1252 protein; P-loop, 92.5 0.062 2.1E-06 51.9 3.1 24 36-59 7-30 (203)
290 3foz_A TRNA delta(2)-isopenten 92.5 0.12 4.2E-06 52.3 5.3 26 36-61 9-34 (316)
291 2grj_A Dephospho-COA kinase; T 92.4 0.058 2E-06 51.2 2.7 22 38-59 13-34 (192)
292 3upu_A ATP-dependent DNA helic 92.4 0.057 1.9E-06 59.8 3.1 35 21-62 36-70 (459)
293 1e4v_A Adenylate kinase; trans 92.4 0.037 1.3E-06 54.0 1.4 21 40-60 3-23 (214)
294 3be4_A Adenylate kinase; malar 92.4 0.037 1.3E-06 54.2 1.4 23 38-60 6-28 (217)
295 1ex7_A Guanylate kinase; subst 92.4 0.069 2.4E-06 50.2 3.1 24 38-61 2-25 (186)
296 1q57_A DNA primase/helicase; d 92.4 0.21 7.1E-06 56.0 7.7 56 36-105 241-296 (503)
297 1ye8_A Protein THEP1, hypothet 92.3 0.068 2.3E-06 50.1 3.1 22 39-60 2-23 (178)
298 3zvl_A Bifunctional polynucleo 92.3 0.069 2.4E-06 58.0 3.5 26 35-60 256-281 (416)
299 3a00_A Guanylate kinase, GMP k 92.3 0.066 2.3E-06 50.8 3.0 24 38-61 2-25 (186)
300 2bbw_A Adenylate kinase 4, AK4 92.3 0.072 2.5E-06 53.3 3.4 24 37-60 27-50 (246)
301 3exa_A TRNA delta(2)-isopenten 92.3 0.2 6.8E-06 50.9 6.5 26 37-62 3-28 (322)
302 1g8p_A Magnesium-chelatase 38 92.3 0.041 1.4E-06 58.7 1.6 46 11-62 25-70 (350)
303 2iut_A DNA translocase FTSK; n 92.2 0.19 6.4E-06 55.8 6.8 49 154-209 341-389 (574)
304 1xjc_A MOBB protein homolog; s 92.2 0.05 1.7E-06 50.1 1.9 25 37-61 4-28 (169)
305 1lvg_A Guanylate kinase, GMP k 92.2 0.068 2.3E-06 51.3 3.0 23 37-59 4-26 (198)
306 2if2_A Dephospho-COA kinase; a 92.2 0.066 2.3E-06 51.7 2.9 21 39-59 3-23 (204)
307 2it1_A 362AA long hypothetical 92.2 0.52 1.8E-05 49.5 9.9 27 36-62 28-54 (362)
308 3bgw_A DNAB-like replicative h 92.1 0.2 6.7E-06 54.8 6.9 26 36-61 196-221 (444)
309 3crm_A TRNA delta(2)-isopenten 92.1 0.13 4.5E-06 52.8 5.1 25 37-61 5-29 (323)
310 4e22_A Cytidylate kinase; P-lo 92.1 0.067 2.3E-06 53.6 2.9 26 36-61 26-51 (252)
311 4tmk_A Protein (thymidylate ki 92.1 0.075 2.6E-06 51.4 3.1 26 37-62 3-28 (213)
312 4edh_A DTMP kinase, thymidylat 92.1 0.051 1.7E-06 52.6 1.9 27 36-62 5-31 (213)
313 1g5t_A COB(I)alamin adenosyltr 92.1 0.26 8.9E-06 46.2 6.6 54 36-99 27-80 (196)
314 3ake_A Cytidylate kinase; CMP 92.0 0.078 2.7E-06 51.4 3.2 23 38-60 3-25 (208)
315 3asz_A Uridine kinase; cytidin 91.9 0.079 2.7E-06 51.5 3.1 24 36-59 5-28 (211)
316 3ney_A 55 kDa erythrocyte memb 91.8 0.094 3.2E-06 49.7 3.4 26 36-61 18-43 (197)
317 2r6a_A DNAB helicase, replicat 91.8 0.27 9.2E-06 54.2 7.5 26 36-61 202-227 (454)
318 3hws_A ATP-dependent CLP prote 91.8 0.1 3.5E-06 55.8 4.0 26 36-61 50-75 (363)
319 3d31_A Sulfate/molybdate ABC t 91.7 0.62 2.1E-05 48.7 9.7 27 36-62 25-51 (348)
320 1ixz_A ATP-dependent metallopr 91.6 0.082 2.8E-06 53.2 2.9 21 40-60 52-72 (254)
321 2ze6_A Isopentenyl transferase 91.5 0.088 3E-06 52.7 3.0 22 39-60 3-24 (253)
322 1vht_A Dephospho-COA kinase; s 91.5 0.1 3.5E-06 51.0 3.4 23 37-59 4-26 (218)
323 2f6r_A COA synthase, bifunctio 91.3 0.11 3.6E-06 53.1 3.4 23 36-58 74-96 (281)
324 3a8t_A Adenylate isopentenyltr 91.3 0.28 9.7E-06 50.5 6.4 59 37-95 40-115 (339)
325 1gtv_A TMK, thymidylate kinase 91.2 0.036 1.2E-06 54.2 -0.2 23 39-61 2-24 (214)
326 1s96_A Guanylate kinase, GMP k 91.1 0.12 4.1E-06 50.3 3.4 26 36-61 15-40 (219)
327 3fvq_A Fe(3+) IONS import ATP- 91.1 0.35 1.2E-05 50.6 7.1 27 36-62 29-55 (359)
328 1ltq_A Polynucleotide kinase; 91.1 0.095 3.3E-06 54.3 2.8 22 38-59 3-24 (301)
329 2jeo_A Uridine-cytidine kinase 91.0 0.11 3.8E-06 51.8 3.2 26 36-61 24-49 (245)
330 3lv8_A DTMP kinase, thymidylat 90.8 0.082 2.8E-06 51.9 1.9 27 36-62 26-52 (236)
331 3nwj_A ATSK2; P loop, shikimat 90.8 0.12 4.3E-06 51.2 3.2 42 14-60 30-71 (250)
332 2r2a_A Uncharacterized protein 90.7 0.13 4.3E-06 49.1 3.1 20 39-58 7-26 (199)
333 2ehv_A Hypothetical protein PH 90.7 0.13 4.5E-06 51.5 3.4 23 36-58 29-51 (251)
334 2orw_A Thymidine kinase; TMTK, 90.6 0.14 4.7E-06 48.3 3.2 24 37-60 3-26 (184)
335 1znw_A Guanylate kinase, GMP k 90.6 0.14 4.8E-06 49.5 3.4 26 36-61 19-44 (207)
336 3v9p_A DTMP kinase, thymidylat 90.6 0.075 2.6E-06 51.8 1.4 27 36-62 24-50 (227)
337 2qmh_A HPR kinase/phosphorylas 90.5 0.16 5.3E-06 47.7 3.4 25 37-61 34-58 (205)
338 1z6g_A Guanylate kinase; struc 90.5 0.14 4.7E-06 50.0 3.2 25 36-60 22-46 (218)
339 3ld9_A DTMP kinase, thymidylat 90.5 0.096 3.3E-06 50.8 2.1 26 36-61 20-45 (223)
340 1htw_A HI0065; nucleotide-bind 90.4 0.15 5.3E-06 46.4 3.3 26 36-61 32-57 (158)
341 1um8_A ATP-dependent CLP prote 90.4 0.12 4E-06 55.6 2.9 25 37-61 72-96 (376)
342 2cvh_A DNA repair and recombin 90.4 0.15 5.2E-06 49.8 3.5 24 36-59 19-42 (220)
343 4hlc_A DTMP kinase, thymidylat 90.3 0.24 8.3E-06 47.5 4.7 25 38-62 3-27 (205)
344 1vma_A Cell division protein F 90.3 0.21 7.1E-06 51.3 4.5 47 15-61 80-128 (306)
345 4a74_A DNA repair and recombin 90.3 0.14 4.6E-06 50.6 3.1 25 36-60 24-48 (231)
346 2w0m_A SSO2452; RECA, SSPF, un 90.3 0.15 5.1E-06 50.4 3.3 25 36-60 22-46 (235)
347 3eph_A TRNA isopentenyltransfe 90.2 0.17 5.7E-06 53.5 3.7 24 38-61 3-26 (409)
348 3lnc_A Guanylate kinase, GMP k 90.2 0.11 3.7E-06 51.4 2.2 25 36-60 26-51 (231)
349 2ocp_A DGK, deoxyguanosine kin 90.1 0.13 4.3E-06 51.3 2.5 25 38-62 3-27 (241)
350 1p5z_B DCK, deoxycytidine kina 90.0 0.12 4E-06 52.3 2.3 26 37-62 24-49 (263)
351 1svm_A Large T antigen; AAA+ f 89.9 0.17 5.7E-06 53.7 3.5 24 36-59 168-191 (377)
352 1q3t_A Cytidylate kinase; nucl 89.9 0.18 6E-06 50.0 3.5 27 34-60 13-39 (236)
353 3tmk_A Thymidylate kinase; pho 89.9 0.12 4.1E-06 49.9 2.2 27 36-62 4-30 (216)
354 1np6_A Molybdopterin-guanine d 89.9 0.17 5.9E-06 46.9 3.2 25 37-61 6-30 (174)
355 2nq2_C Hypothetical ABC transp 89.9 0.39 1.3E-05 47.8 6.0 58 36-96 30-87 (253)
356 2v9p_A Replication protein E1; 89.9 0.17 5.9E-06 51.7 3.4 25 36-60 125-149 (305)
357 3tqc_A Pantothenate kinase; bi 89.7 0.28 9.6E-06 50.6 4.9 26 36-61 91-116 (321)
358 2i3b_A HCR-ntpase, human cance 89.6 0.18 6.1E-06 47.7 3.1 24 38-61 2-25 (189)
359 2pjz_A Hypothetical protein ST 89.5 1 3.5E-05 45.0 8.7 25 37-61 30-54 (263)
360 3tqf_A HPR(Ser) kinase; transf 89.4 0.19 6.4E-06 45.8 2.9 25 36-60 15-39 (181)
361 2eyu_A Twitching motility prot 89.3 0.2 6.8E-06 50.3 3.3 25 36-60 24-48 (261)
362 3e1s_A Exodeoxyribonuclease V, 89.2 0.18 6.3E-06 57.0 3.4 25 37-61 204-228 (574)
363 1x6v_B Bifunctional 3'-phospho 89.1 0.13 4.3E-06 58.2 1.9 26 36-61 51-76 (630)
364 1n0w_A DNA repair protein RAD5 89.1 0.21 7.2E-06 49.7 3.4 25 36-60 23-47 (243)
365 3dm5_A SRP54, signal recogniti 89.0 0.63 2.2E-05 50.1 7.1 46 17-62 78-125 (443)
366 2f1r_A Molybdopterin-guanine d 88.9 0.13 4.5E-06 47.6 1.5 23 38-60 3-25 (171)
367 3aez_A Pantothenate kinase; tr 88.8 0.24 8.3E-06 51.1 3.6 26 36-61 89-114 (312)
368 3jvv_A Twitching mobility prot 88.8 0.27 9.4E-06 51.7 4.1 26 36-61 122-147 (356)
369 2h92_A Cytidylate kinase; ross 88.8 0.18 6.1E-06 49.3 2.5 23 38-60 4-26 (219)
370 2axn_A 6-phosphofructo-2-kinas 88.7 0.15 5.1E-06 57.0 2.1 26 36-61 34-59 (520)
371 2cbz_A Multidrug resistance-as 88.7 0.25 8.6E-06 48.7 3.5 26 36-61 30-55 (237)
372 1m8p_A Sulfate adenylyltransfe 88.6 0.27 9.2E-06 55.5 4.1 26 36-61 395-420 (573)
373 1sq5_A Pantothenate kinase; P- 88.6 0.24 8.2E-06 51.3 3.4 26 36-61 79-104 (308)
374 2dr3_A UPF0273 protein PH0284; 88.5 0.24 8.1E-06 49.5 3.3 25 36-60 22-46 (247)
375 1nlf_A Regulatory protein REPA 88.4 0.23 7.9E-06 50.6 3.2 25 36-60 29-53 (279)
376 1u94_A RECA protein, recombina 88.4 0.15 5.1E-06 53.7 1.8 25 36-60 62-86 (356)
377 2zr9_A Protein RECA, recombina 88.4 0.14 4.9E-06 53.8 1.6 25 36-60 60-84 (349)
378 3b9q_A Chloroplast SRP recepto 88.4 0.35 1.2E-05 49.6 4.5 45 16-60 74-123 (302)
379 2ga8_A Hypothetical 39.9 kDa p 88.2 0.28 9.7E-06 50.8 3.6 23 38-60 25-47 (359)
380 4b3f_X DNA-binding protein smu 88.1 0.24 8.3E-06 57.4 3.4 25 37-61 205-229 (646)
381 1a7j_A Phosphoribulokinase; tr 88.1 0.17 5.7E-06 51.8 1.8 26 36-61 4-29 (290)
382 2b8t_A Thymidine kinase; deoxy 88.0 0.28 9.4E-06 47.6 3.2 25 36-60 11-35 (223)
383 3b85_A Phosphate starvation-in 88.0 0.24 8.3E-06 47.6 2.8 40 7-59 5-44 (208)
384 1cr0_A DNA primase/helicase; R 87.9 0.26 8.9E-06 50.8 3.2 25 36-60 34-58 (296)
385 1g41_A Heat shock protein HSLU 87.8 0.22 7.7E-06 53.7 2.7 24 38-61 51-74 (444)
386 1zu4_A FTSY; GTPase, signal re 87.8 0.39 1.3E-05 49.7 4.4 47 15-61 75-129 (320)
387 3ch4_B Pmkase, phosphomevalona 87.7 0.3 1E-05 46.0 3.2 25 36-60 10-34 (202)
388 2pze_A Cystic fibrosis transme 87.7 0.31 1E-05 47.8 3.4 27 36-62 33-59 (229)
389 1mv5_A LMRA, multidrug resista 87.6 0.31 1.1E-05 48.3 3.4 27 36-62 27-53 (243)
390 2z43_A DNA repair and recombin 87.6 0.31 1E-05 50.9 3.5 27 36-62 106-132 (324)
391 2ff7_A Alpha-hemolysin translo 87.5 0.31 1.1E-05 48.4 3.4 27 36-62 34-60 (247)
392 3hjn_A DTMP kinase, thymidylat 87.5 0.33 1.1E-05 46.2 3.5 23 40-62 3-25 (197)
393 1w36_D RECD, exodeoxyribonucle 87.4 0.28 9.5E-06 56.2 3.3 25 37-61 164-188 (608)
394 1b0u_A Histidine permease; ABC 87.4 0.34 1.1E-05 48.6 3.6 27 36-62 31-57 (262)
395 3kl4_A SRP54, signal recogniti 87.3 0.41 1.4E-05 51.6 4.3 46 16-61 73-121 (433)
396 2qi9_C Vitamin B12 import ATP- 87.3 0.33 1.1E-05 48.2 3.4 27 36-62 25-51 (249)
397 1rj9_A FTSY, signal recognitio 87.3 0.36 1.2E-05 49.6 3.8 25 36-60 101-125 (304)
398 1g8f_A Sulfate adenylyltransfe 87.3 0.2 7E-06 55.2 2.0 27 36-62 394-420 (511)
399 3hr8_A Protein RECA; alpha and 87.2 0.29 9.9E-06 51.3 3.1 25 36-60 60-84 (356)
400 3vkg_A Dynein heavy chain, cyt 87.2 1.7 5.7E-05 58.6 10.6 32 22-61 1297-1328(3245)
401 2ixe_A Antigen peptide transpo 87.1 0.35 1.2E-05 48.8 3.5 27 36-62 44-70 (271)
402 3dzd_A Transcriptional regulat 87.1 4.5 0.00015 42.8 12.3 117 158-284 224-358 (368)
403 3j16_B RLI1P; ribosome recycli 87.1 0.73 2.5E-05 52.3 6.5 26 38-63 379-404 (608)
404 1jr3_D DNA polymerase III, del 87.1 5.1 0.00017 41.9 12.8 105 158-284 78-189 (343)
405 2ghi_A Transport protein; mult 87.1 0.35 1.2E-05 48.4 3.5 27 36-62 45-71 (260)
406 2r8r_A Sensor protein; KDPD, P 87.0 0.39 1.3E-05 46.2 3.5 24 38-61 7-30 (228)
407 1ji0_A ABC transporter; ATP bi 86.9 0.35 1.2E-05 47.8 3.4 27 36-62 31-57 (240)
408 3d3q_A TRNA delta(2)-isopenten 86.9 0.25 8.7E-06 51.1 2.3 24 38-61 8-31 (340)
409 2d2e_A SUFC protein; ABC-ATPas 86.8 0.35 1.2E-05 48.1 3.3 25 36-60 28-52 (250)
410 2olj_A Amino acid ABC transpor 86.7 0.39 1.3E-05 48.1 3.6 27 36-62 49-75 (263)
411 1g6h_A High-affinity branched- 86.5 0.38 1.3E-05 48.2 3.4 27 36-62 32-58 (257)
412 2yz2_A Putative ABC transporte 86.5 0.4 1.4E-05 48.3 3.5 27 36-62 32-58 (266)
413 2qm8_A GTPase/ATPase; G protei 86.5 0.38 1.3E-05 50.4 3.5 24 36-59 54-77 (337)
414 2zu0_C Probable ATP-dependent 86.4 0.41 1.4E-05 48.2 3.5 25 36-60 45-69 (267)
415 1c9k_A COBU, adenosylcobinamid 86.4 0.38 1.3E-05 44.5 3.0 21 40-60 2-22 (180)
416 1pzn_A RAD51, DNA repair and r 86.4 0.34 1.2E-05 51.0 3.1 26 36-61 130-155 (349)
417 2onk_A Molybdate/tungstate ABC 86.3 0.41 1.4E-05 47.2 3.4 25 38-62 25-49 (240)
418 3fdi_A Uncharacterized protein 86.1 0.32 1.1E-05 46.5 2.5 26 37-62 6-31 (201)
419 3ozx_A RNAse L inhibitor; ATP 86.1 1.4 4.7E-05 49.3 8.0 146 36-205 293-443 (538)
420 2og2_A Putative signal recogni 85.9 0.6 2.1E-05 49.0 4.6 46 15-60 130-180 (359)
421 4g1u_C Hemin import ATP-bindin 85.8 0.43 1.5E-05 47.9 3.4 27 36-62 36-62 (266)
422 2www_A Methylmalonic aciduria 85.8 0.48 1.6E-05 49.9 3.9 25 36-60 73-97 (349)
423 2ewv_A Twitching motility prot 85.7 0.4 1.4E-05 51.0 3.2 25 36-60 135-159 (372)
424 3cr8_A Sulfate adenylyltranfer 85.7 0.3 1E-05 54.7 2.3 26 36-61 368-393 (552)
425 2wsm_A Hydrogenase expression/ 85.7 0.49 1.7E-05 46.1 3.7 26 36-61 29-54 (221)
426 3iev_A GTP-binding protein ERA 85.6 0.37 1.3E-05 49.8 2.9 28 33-60 6-33 (308)
427 4i1u_A Dephospho-COA kinase; s 85.5 0.42 1.4E-05 45.7 2.9 21 39-59 11-31 (210)
428 3lda_A DNA repair protein RAD5 85.4 0.42 1.4E-05 51.1 3.2 23 36-58 177-199 (400)
429 2gza_A Type IV secretion syste 85.3 0.54 1.8E-05 49.8 4.0 27 36-62 174-200 (361)
430 2vp4_A Deoxynucleoside kinase; 85.3 0.44 1.5E-05 46.8 3.1 25 36-60 19-43 (230)
431 2ihy_A ABC transporter, ATP-bi 85.1 0.49 1.7E-05 47.9 3.4 27 36-62 46-72 (279)
432 3kta_A Chromosome segregation 85.1 0.5 1.7E-05 44.4 3.3 23 37-59 26-48 (182)
433 2gks_A Bifunctional SAT/APS ki 85.0 0.35 1.2E-05 54.3 2.4 25 37-61 372-396 (546)
434 1xp8_A RECA protein, recombina 84.9 0.29 1E-05 51.7 1.6 25 36-60 73-97 (366)
435 1p9r_A General secretion pathw 84.7 0.49 1.7E-05 51.0 3.3 26 36-61 166-191 (418)
436 2yhs_A FTSY, cell division pro 84.6 0.73 2.5E-05 50.1 4.6 46 15-60 268-316 (503)
437 2ged_A SR-beta, signal recogni 84.5 0.7 2.4E-05 43.7 4.1 24 37-60 48-71 (193)
438 3e70_C DPA, signal recognition 84.5 0.56 1.9E-05 48.6 3.6 45 16-60 101-152 (328)
439 2px0_A Flagellar biosynthesis 84.4 0.57 1.9E-05 47.9 3.5 26 36-61 104-129 (296)
440 1tq4_A IIGP1, interferon-induc 84.4 0.67 2.3E-05 49.6 4.2 26 36-61 68-93 (413)
441 2gk6_A Regulator of nonsense t 84.4 0.49 1.7E-05 54.5 3.4 25 38-62 196-220 (624)
442 2yv5_A YJEQ protein; hydrolase 84.3 0.68 2.3E-05 47.6 4.1 23 38-61 166-188 (302)
443 2yyz_A Sugar ABC transporter, 84.2 0.57 2E-05 49.1 3.5 27 36-62 28-54 (359)
444 3hdt_A Putative kinase; struct 84.0 0.39 1.3E-05 46.7 2.0 26 36-61 13-38 (223)
445 2bbs_A Cystic fibrosis transme 84.0 0.58 2E-05 47.6 3.4 27 36-62 63-89 (290)
446 1f2t_A RAD50 ABC-ATPase; DNA d 84.0 0.63 2.1E-05 41.9 3.3 22 37-58 23-44 (149)
447 1bif_A 6-phosphofructo-2-kinas 84.0 0.36 1.2E-05 53.4 2.0 24 37-60 39-62 (469)
448 1j8m_F SRP54, signal recogniti 84.0 0.64 2.2E-05 47.5 3.7 46 16-61 74-122 (297)
449 3p32_A Probable GTPase RV1496/ 83.8 0.62 2.1E-05 49.3 3.6 26 36-61 78-103 (355)
450 2xxa_A Signal recognition part 83.7 1.1 3.8E-05 48.4 5.6 47 15-61 75-124 (433)
451 1u0l_A Probable GTPase ENGC; p 83.7 0.77 2.6E-05 47.2 4.2 24 38-61 170-193 (301)
452 2pt7_A CAG-ALFA; ATPase, prote 83.5 0.53 1.8E-05 49.1 2.9 26 37-62 171-196 (330)
453 2hf9_A Probable hydrogenase ni 83.3 0.84 2.9E-05 44.6 4.2 25 36-60 37-61 (226)
454 2rcn_A Probable GTPase ENGC; Y 83.3 0.87 3E-05 47.6 4.4 24 38-61 216-239 (358)
455 1v43_A Sugar-binding transport 83.3 0.66 2.3E-05 48.9 3.5 27 36-62 36-62 (372)
456 1v5w_A DMC1, meiotic recombina 83.0 0.62 2.1E-05 48.9 3.2 25 36-60 121-145 (343)
457 2atv_A RERG, RAS-like estrogen 82.9 0.68 2.3E-05 44.0 3.3 23 38-60 29-51 (196)
458 3nh6_A ATP-binding cassette SU 82.8 0.57 2E-05 48.0 2.7 27 36-62 79-105 (306)
459 3sop_A Neuronal-specific septi 82.5 0.58 2E-05 47.1 2.7 22 39-60 4-25 (270)
460 2wjy_A Regulator of nonsense t 82.5 0.65 2.2E-05 54.8 3.4 26 37-62 371-396 (800)
461 1dek_A Deoxynucleoside monopho 82.5 0.68 2.3E-05 45.4 3.0 22 39-60 3-24 (241)
462 3io5_A Recombination and repai 82.5 0.65 2.2E-05 47.2 2.9 23 38-60 29-51 (333)
463 2i1q_A DNA repair and recombin 82.3 0.65 2.2E-05 48.4 3.1 25 36-60 97-121 (322)
464 2zej_A Dardarin, leucine-rich 82.3 0.67 2.3E-05 43.5 2.9 21 40-60 5-25 (184)
465 1fzq_A ADP-ribosylation factor 82.2 0.74 2.5E-05 43.1 3.1 25 36-60 15-39 (181)
466 3vkw_A Replicase large subunit 82.1 0.81 2.8E-05 49.1 3.7 25 35-59 159-183 (446)
467 1lw7_A Transcriptional regulat 82.1 0.65 2.2E-05 49.4 3.0 26 37-62 170-195 (365)
468 2f9l_A RAB11B, member RAS onco 82.1 0.67 2.3E-05 44.2 2.9 22 39-60 7-28 (199)
469 3f9v_A Minichromosome maintena 82.1 0.48 1.7E-05 53.9 2.1 23 39-61 329-351 (595)
470 1ko7_A HPR kinase/phosphatase; 82.0 0.75 2.6E-05 46.9 3.2 24 37-60 144-167 (314)
471 1zj6_A ADP-ribosylation factor 82.0 1 3.5E-05 42.3 4.1 23 37-59 16-38 (187)
472 1xx6_A Thymidine kinase; NESG, 81.9 0.88 3E-05 42.9 3.5 26 36-61 7-32 (191)
473 1oix_A RAS-related protein RAB 81.7 0.69 2.4E-05 43.8 2.8 23 39-61 31-53 (191)
474 3gd7_A Fusion complex of cysti 81.3 0.81 2.8E-05 48.6 3.4 26 36-61 46-71 (390)
475 2dyk_A GTP-binding protein; GT 81.3 0.79 2.7E-05 41.7 2.9 21 40-60 4-24 (161)
476 2gj8_A MNME, tRNA modification 81.2 0.8 2.7E-05 42.4 3.0 23 38-60 5-27 (172)
477 2aka_B Dynamin-1; fusion prote 81.2 1.5 5E-05 45.1 5.3 42 19-60 8-49 (299)
478 2wji_A Ferrous iron transport 81.2 0.78 2.7E-05 42.1 2.9 23 38-60 4-26 (165)
479 1yrb_A ATP(GTP)binding protein 81.2 0.81 2.8E-05 45.9 3.2 26 36-61 13-38 (262)
480 4gzl_A RAS-related C3 botulinu 81.0 0.79 2.7E-05 43.9 2.9 52 3-60 2-53 (204)
481 2oap_1 GSPE-2, type II secreti 81.0 0.78 2.7E-05 50.9 3.2 26 37-62 260-285 (511)
482 2xzl_A ATP-dependent helicase 80.9 0.78 2.7E-05 54.2 3.3 25 37-61 375-399 (802)
483 1oxx_K GLCV, glucose, ABC tran 80.7 0.6 2E-05 49.0 2.0 27 36-62 30-56 (353)
484 1knx_A Probable HPR(Ser) kinas 80.4 0.92 3.2E-05 46.1 3.2 24 37-60 147-170 (312)
485 2nzj_A GTP-binding protein REM 80.4 0.93 3.2E-05 41.9 3.1 22 39-60 6-27 (175)
486 1z2a_A RAS-related protein RAB 80.1 0.89 3.1E-05 41.7 2.9 21 40-60 8-28 (168)
487 1kao_A RAP2A; GTP-binding prot 79.9 0.92 3.2E-05 41.5 2.9 21 40-60 6-26 (167)
488 1pui_A ENGB, probable GTP-bind 79.7 0.69 2.4E-05 44.6 2.0 25 36-60 25-49 (210)
489 2ce2_X GTPase HRAS; signaling 79.6 0.9 3.1E-05 41.4 2.7 21 40-60 6-26 (166)
490 2lkc_A Translation initiation 79.6 1.3 4.5E-05 41.0 3.9 25 36-60 7-31 (178)
491 3pqc_A Probable GTP-binding pr 79.5 1.3 4.5E-05 41.8 4.0 24 37-60 23-46 (195)
492 3q72_A GTP-binding protein RAD 79.5 0.96 3.3E-05 41.4 2.9 21 40-60 5-25 (166)
493 2wjg_A FEOB, ferrous iron tran 79.4 1.2 4.1E-05 41.8 3.6 23 38-60 8-30 (188)
494 2p67_A LAO/AO transport system 79.4 1 3.4E-05 47.3 3.3 25 36-60 55-79 (341)
495 2obl_A ESCN; ATPase, hydrolase 79.2 0.93 3.2E-05 47.5 2.9 27 36-62 70-96 (347)
496 1ypw_A Transitional endoplasmi 79.0 0.59 2E-05 55.4 1.5 25 36-60 510-534 (806)
497 1tf7_A KAIC; homohexamer, hexa 79.0 0.97 3.3E-05 50.8 3.2 23 36-58 38-60 (525)
498 2j37_W Signal recognition part 78.9 1.5 5.1E-05 48.4 4.5 46 16-61 77-125 (504)
499 1svi_A GTP-binding protein YSX 78.7 1.3 4.4E-05 41.9 3.6 25 36-60 22-46 (195)
500 1wms_A RAB-9, RAB9, RAS-relate 78.7 1.1 3.6E-05 41.7 2.9 22 39-60 9-30 (177)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.4e-58 Score=520.35 Aligned_cols=396 Identities=30% Similarity=0.392 Sum_probs=226.0
Q ss_pred CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384 368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA 447 (978)
Q Consensus 368 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~ 447 (978)
|++++..+..|.||||+||..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 83 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP 83 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527 (978)
Q Consensus 448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 527 (978)
||+|+..|+.++ +++|+++|++++..+..|.|||++|+..|+.+++++|++++++.+..+..|.|||++|+
T Consensus 84 L~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 154 (437)
T 1n11_A 84 LHCAARIGHTNM---------VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA 154 (437)
T ss_dssp HHHHHHHTCHHH---------HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHH---------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence 555555555555 55555555555555555555555555555555555555555555555555555555555
Q ss_pred hccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHH
Q psy9384 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607 (978)
Q Consensus 528 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~ 607 (978)
..++.+++++|++.|++++..+..|.|||+.|+..++.+++++|+++|++++..+..|.||||.|+..++.++++
T Consensus 155 -----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 155 -----KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp -----HTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred -----HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 445555555555555555555555555666666655666666666555555555555555666666656666666
Q ss_pred HHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHH
Q psy9384 608 LLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCR 687 (978)
Q Consensus 608 ~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 687 (978)
+|++.|++++..+..|.||||+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.++++
T Consensus 230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~ 295 (437)
T 1n11_A 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--------------ANGNLGNKSGLTPLHLVAQEGHVPVAD 295 (437)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--------------CCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 666555555555555556666666666666666665555 445555555556666666666666666
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHh
Q psy9384 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILS 767 (978)
Q Consensus 688 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~ 767 (978)
+|+++|++++..+..|.||||+|+..|+.++|++|+++ |++++.++..|.||||+|+ ..++.+++++|+ +
T Consensus 296 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~-----~~g~~~iv~~Ll----~ 365 (437)
T 1n11_A 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAA-----QQGHTDIVTLLL----K 365 (437)
T ss_dssp HHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHH----H
T ss_pred HHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHH-----HCChHHHHHHHH----H
Confidence 66665655555555556666666666666666666554 5555555555666666665 555556666665 5
Q ss_pred cCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHh
Q psy9384 768 SLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISI 806 (978)
Q Consensus 768 ~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~ 806 (978)
+| ++++..+..|.||++.|...|+.+++++|...
T Consensus 366 ~g-----a~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~ 399 (437)
T 1n11_A 366 NG-----ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399 (437)
T ss_dssp TT-----CCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred Cc-----CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence 55 55555555555666555555555555555443
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.1e-58 Score=517.73 Aligned_cols=392 Identities=30% Similarity=0.386 Sum_probs=374.8
Q ss_pred ccccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384 335 RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTP 414 (978)
Q Consensus 335 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~ 414 (978)
.++..+..|.||||+|+..|++++|++|++ .+.+++..+..|.||||+||..|+.++|++|++.|++++.++..|.||
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 83 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQ--RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP 83 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHH--TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence 456678899999999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy9384 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494 (978)
Q Consensus 415 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~ 494 (978)
||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|++.+++.+..+..|.|||++|+
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~---------v~~Ll~~~~~~~~~~~~g~t~L~~A~ 154 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET---------VLALLEKEASQACMTKKGFTPLHVAA 154 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH---------HHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy9384 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574 (978)
Q Consensus 495 ~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~ 574 (978)
..|+.+++++|+++|++++..+..|.|||++|+ ..++.+++++|++.|.+++..+..|.|||++|+..|+.++++
T Consensus 155 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 155 KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV-----HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHH-----HTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred HHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccC
Q psy9384 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG 654 (978)
Q Consensus 575 ~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~ 654 (978)
+|++.|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|
T Consensus 230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-------- 301 (437)
T 1n11_A 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-------- 301 (437)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT--------
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCC
Q psy9384 655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734 (978)
Q Consensus 655 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~ 734 (978)
.+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++|++|+++ |++++.+|
T Consensus 302 ------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~ 374 (437)
T 1n11_A 302 ------VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVS 374 (437)
T ss_dssp ------CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCC
T ss_pred ------ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCC
Confidence 78888999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred CCCCcHHHHHHhcccchhHHHHHHHHHH
Q psy9384 735 HDGRTALRVNMKNVTKLSFWYLLIQPLL 762 (978)
Q Consensus 735 ~~g~t~L~~a~~~~~~~~~~~~~~~~Ll 762 (978)
.+|.|||++|. ..++.+++++|.
T Consensus 375 ~~g~t~l~~A~-----~~g~~~~~~~l~ 397 (437)
T 1n11_A 375 SDGTTPLAIAK-----RLGYISVTDVLK 397 (437)
T ss_dssp SSSCCHHHHHH-----HTTCHHHHHHHH
T ss_pred CCCCCHHHHHH-----HcCcHHHHHHHH
Confidence 99999999999 889999999987
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.2e-41 Score=368.48 Aligned_cols=301 Identities=30% Similarity=0.392 Sum_probs=266.8
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDC-EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 455 (978)
.|.|+||.||+.|+.++|++|+++|+++|.++. .|+||||+|+..|+.++|++|+++|++++..+..+.++++.++..+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 467899999999999999999999999998875 4899999999999999999999999999999999999999999999
Q ss_pred CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC
Q psy9384 456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG 535 (978)
Q Consensus 456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~ 535 (978)
...+ +..++..+++++..+..|.||+++|+..|+.+++++|+++|++++.......
T Consensus 104 ~~~~---------~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~--------------- 159 (337)
T 4g8k_A 104 SVKL---------LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE--------------- 159 (337)
T ss_dssp CHHH---------HHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----------------
T ss_pred cchh---------hHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc---------------
Confidence 9988 9999999999999999999999999999999999999999998876543221
Q ss_pred hHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccCCCCCCCcHHHHHHHcCC----HHHHHHHH
Q psy9384 536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE-NEADQDHIDKSGRTPLWAAASMGH----ASCVALLL 610 (978)
Q Consensus 536 ~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~----~~~v~~Ll 610 (978)
+....+..|.||||+|+..|+.+++++|++ .|++++..+..|.++++.++..+. ..++++|+
T Consensus 160 -------------~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl 226 (337)
T 4g8k_A 160 -------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 226 (337)
T ss_dssp -----------------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHH
T ss_pred -------------ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHH
Confidence 123345678899999999999999999995 599999999999999998776543 46889999
Q ss_pred HCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHH
Q psy9384 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690 (978)
Q Consensus 611 ~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 690 (978)
++|++++.++..|.||||+|+..|+.+++++|++.+. .+++.+|..|+||||+|+..|+.+++++|+
T Consensus 227 ~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~-------------~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll 293 (337)
T 4g8k_A 227 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH-------------IEINDTDSDGKTALLLAVELKLKKIAELLC 293 (337)
T ss_dssp HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT-------------CCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC-------------CcccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999998631 788899999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCC
Q psy9384 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733 (978)
Q Consensus 691 ~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~ 733 (978)
++|+++|.. +|||+|+++|+.++|++|+++ |+++|..
T Consensus 294 ~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~ 330 (337)
T 4g8k_A 294 KRGASTDCG-----DLVMTARRNYDHSLVKVLLSH-GAKEDFH 330 (337)
T ss_dssp TTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHT-TCCC---
T ss_pred HCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHC-cCCCCCC
Confidence 999998754 599999999999999999998 9998864
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1e-39 Score=355.37 Aligned_cols=290 Identities=30% Similarity=0.426 Sum_probs=269.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW 420 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 420 (978)
.|.|+|+.|+..|++++|++|++ .|++++..+. .|+||||+||..|+.++|++|+++|++++..+..+.++++.++.
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~--~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHH--CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 46799999999999999999999 8999998875 59999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCccc----------CCCCCcHH
Q psy9384 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA----------DSEGRTAL 490 (978)
Q Consensus 421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~----------~~~~~t~L 490 (978)
.+...++..++..+++++..+..|.||+++|+..|+.++ +++|+++|++++.. +..|.|||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~---------~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L 172 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA---------LKFLYKRGANVNLRRKTKEDQERLRKGGATAL 172 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHH---------HHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence 999999999999999999999999999999999999999 99999999988754 34588999
Q ss_pred HHHHHcCCHHHHHHHHH-cCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy9384 491 IASAYMGHADIVSSILE-YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569 (978)
Q Consensus 491 ~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 569 (978)
|+|+..|+.++|++|++ .|++++..+..|.++++.++... ...+...++++|+++|++++.++..|.||||+|+..|+
T Consensus 173 ~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~-~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS-CTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc-CcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 99999999999999996 59999999999999998876432 23455678999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCc
Q psy9384 570 RDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648 (978)
Q Consensus 570 ~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~ 648 (978)
.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++. .+||++|+..|+.++|++|+++|++
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~ 326 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSHGAK 326 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCC
Confidence 9999999985 899999999999999999999999999999999998875 4599999999999999999999954
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9.7e-40 Score=358.92 Aligned_cols=325 Identities=29% Similarity=0.303 Sum_probs=265.3
Q ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384 373 LVDKHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451 (978)
Q Consensus 373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A 451 (978)
..+..+.++||.||..|+.+.|+.|+.. +.+++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred eeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence 3455667888888888888888877764 778888888888888888888888888888888888888888888888888
Q ss_pred HhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccC
Q psy9384 452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531 (978)
Q Consensus 452 ~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 531 (978)
+..|+.++ +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..+.++++.++
T Consensus 99 ~~~g~~~i---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~---- 165 (351)
T 3utm_A 99 CSYGHYEV---------TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP---- 165 (351)
T ss_dssp HHTTCHHH---------HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCS----
T ss_pred HHCCCHHH---------HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHh----
Confidence 88888888 88888888888888888888888888888888888888888888888888888888887
Q ss_pred CCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHc---CCHHHHHH
Q psy9384 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM---GHASCVAL 608 (978)
Q Consensus 532 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~---~~~~~v~~ 608 (978)
..+..+.+.+.... .++..++..++.+.++.++..+......+..+.||||.|+.. +..+++++
T Consensus 166 -~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~ 232 (351)
T 3utm_A 166 -TPELRERLTYEFKG------------HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232 (351)
T ss_dssp -SHHHHHHHHHHHHH------------HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHH
T ss_pred -hhhhHHHHHhhhcc------------cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHH
Confidence 55666666665532 477888889999999988887766666777889999999998 55899999
Q ss_pred HHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHH
Q psy9384 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688 (978)
Q Consensus 609 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 688 (978)
|++.|++++..+..|.||||+|+..|+.+++++|+++| .+++.++..|+||||+|+..|+.+++++
T Consensus 233 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--------------a~~n~~d~~g~t~L~~A~~~~~~~~v~~ 298 (351)
T 3utm_A 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG--------------AKMNALDSLGQTALHRAALAGHLQTCRL 298 (351)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--------------CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--------------CCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999999999999999999 7888899999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384 689 LLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNM 745 (978)
Q Consensus 689 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~ 745 (978)
|+++|++++..|..|.||+++| +.+++++|.+..+ .....+.+++..|+
T Consensus 299 Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~----~~~~~~~~~l~~A~ 347 (351)
T 3utm_A 299 LLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTP----MRTSDVDYRLLEAS 347 (351)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC--------------------
T ss_pred HHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhccc----cccCcceeehhhhh
Confidence 9999999999999999999986 6788888888622 23345667888887
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.7e-39 Score=356.98 Aligned_cols=331 Identities=27% Similarity=0.291 Sum_probs=284.5
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy9384 337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416 (978)
Q Consensus 337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~ 416 (978)
...+..+.++|+.|+..|+.+.++.++.. .+.+++..|..|.||||+||..|+.++|++|+++|++++..+..|.||||
T Consensus 18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 18 VLTGEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred eeeccccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 33455678999999999999999999984 57888999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q psy9384 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496 (978)
Q Consensus 417 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 496 (978)
+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..+.+|++.|+..
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~~~l~~a~~~ 167 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV---------CSLLLSHGADPTLVNCHGKSAVDMAPTP 167 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHCSSH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCccccCCCCcchHHHhhh
Confidence 9999999999999999999999999999999999999999999 9999999999999999999999999998
Q ss_pred CCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHH
Q psy9384 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE---GHRDVC 573 (978)
Q Consensus 497 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~---~~~~iv 573 (978)
+..+.+.+.... .++..++ ..+..+.+..++..+......+..+.||||.|+.. +..+++
T Consensus 168 ~~~~~~~~~~~~------------~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~ 230 (351)
T 3utm_A 168 ELRERLTYEFKG------------HSLLQAA-----READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA 230 (351)
T ss_dssp HHHHHHHHHHHH------------HHHHHHH-----HTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHH
T ss_pred hhHHHHHhhhcc------------cHHHHHH-----HhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHH
Confidence 888888887643 3444455 46677788888877766666778899999999999 558999
Q ss_pred HHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccc
Q psy9384 574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653 (978)
Q Consensus 574 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~ 653 (978)
++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|
T Consensus 231 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g------- 303 (351)
T 3utm_A 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG------- 303 (351)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-------
T ss_pred HHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q psy9384 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715 (978)
Q Consensus 654 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~ 715 (978)
.+++.++..|.||+++| ..+++++|.+.+.. ....+.+++..|+++|+
T Consensus 304 -------ad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~~gd 351 (351)
T 3utm_A 304 -------SDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASKAGD 351 (351)
T ss_dssp -------CCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred -------CCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhccCC
Confidence 78889999999999987 77899999987653 23457788988888773
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-38 Score=332.33 Aligned_cols=267 Identities=31% Similarity=0.437 Sum_probs=246.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCcccc-CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELV-DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW 420 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 420 (978)
.|.++|+.|+..|+++++++|++ .+.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 46799999999999999999999 78888877 7889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCccc----------CCCCCcHH
Q psy9384 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA----------DSEGRTAL 490 (978)
Q Consensus 421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~----------~~~~~t~L 490 (978)
.|+.+++++|+++|++++..+..|.|||++|+..|+.++ +++|+++|++++.. +..|.|||
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA---------LKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred cCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHH---------HHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 999999999999999999999999999999999999999 99999999999877 77899999
Q ss_pred HHHHHcCCHHHHHHHHHc-CCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy9384 491 IASAYMGHADIVSSILEY-DADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569 (978)
Q Consensus 491 ~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 569 (978)
+.|+..|+.+++++|+++ |++++..+..|.|||+.|+.... .....+++++|++.|++++..+..|.||||+|+..|+
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD-DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC-TTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc-cchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 999999999999999997 99999999999999999984211 1122889999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC
Q psy9384 570 RDVCEILLE-NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620 (978)
Q Consensus 570 ~~iv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 620 (978)
.+++++|++ .|++++..+..|.|||++|+..++.+++++|+++|++++.+|
T Consensus 232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 999999998 799999999999999999999999999999999999988765
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.8e-38 Score=332.18 Aligned_cols=257 Identities=33% Similarity=0.446 Sum_probs=248.1
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINHT-DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 455 (978)
.|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 4689999999999999999999999999988 788999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccC----------CCCCCChhhh
Q psy9384 456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ----------DNDGRTALSV 525 (978)
Q Consensus 456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------~~~~~t~l~~ 525 (978)
+.++ +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++.. +..+.|||+.
T Consensus 84 ~~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~ 154 (285)
T 1wdy_A 84 SVKL---------LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154 (285)
T ss_dssp CHHH---------HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred CHHH---------HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHH
Confidence 9999 99999999999999999999999999999999999999999999877 6789999999
Q ss_pred hhhccCCCCChHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCccCCCCCCCcHHHHHHHc
Q psy9384 526 SALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEGH----RDVCEILLENEADQDHIDKSGRTPLWAAASM 600 (978)
Q Consensus 526 a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~----~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 600 (978)
|+ ..++.+++++|++. |.+++..+..|.|||+.|+..++ .+++++|+++|++++..+..|.||||+|+..
T Consensus 155 A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 155 AA-----EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HH-----HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HH-----HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 99 67899999999998 99999999999999999999999 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHH-CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9384 601 GHASCVALLLF-WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647 (978)
Q Consensus 601 ~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~ 647 (978)
++.+++++|++ .|++++..+..|.||||+|+..++.+++++|+++|+
T Consensus 230 ~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga 277 (285)
T 1wdy_A 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277 (285)
T ss_dssp TCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred CCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence 99999999999 899999999999999999999999999999999993
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-37 Score=339.89 Aligned_cols=326 Identities=25% Similarity=0.277 Sum_probs=190.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS 424 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~ 424 (978)
.+|..++..|+.+.++.+++ ....+. ...+++.-+...|..+++++++.. ..+..|.||||+|+..+.
T Consensus 39 ~~l~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~- 106 (373)
T 2fo1_E 39 HSLLEASYDGYIKRQRNELQ--HYSLYP----NPQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGSY- 106 (373)
T ss_dssp ------------------------------------------------------------------CCCHHHHHHHSSS-
T ss_pred cccccccCCccccchhhhhh--hhcccc----CccccCCCCCcccccccccccccc-----CCCCCCccHHHHHhcCCc-
Confidence 45677777888888888877 232221 223456778888999999998764 457789999999999654
Q ss_pred HHHHHHHhCCCCCCcCC-CCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy9384 425 AVVKLLLQSGADVNCSD-MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503 (978)
Q Consensus 425 ~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~ 503 (978)
+++++|+. .+++..+ ..|.||||+|+..|+.++++.+-. ..++.|++.|+++|..+..|.||||+|+..|+.++++
T Consensus 107 ~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~-~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~ 183 (373)
T 2fo1_E 107 AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV-HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 183 (373)
T ss_dssp CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHH-HHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHH-HHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHH
Confidence 88888865 4677777 689999999999999999332210 0123344778888877778888888888888888888
Q ss_pred HHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCC---CCCCCCCCCCCCHHHHHHHcC---CHHHHHHHH
Q psy9384 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG---AKVDHEDREGMTPLLVAAFEG---HRDVCEILL 577 (978)
Q Consensus 504 ~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g---~~~~~~~~~~~t~L~~a~~~~---~~~iv~~Ll 577 (978)
+|+++|++++..+..|.|||++|+ ..++.+++++|++.+ .+++..+..|.|||++|+..+ +.+++++|+
T Consensus 184 ~Ll~~ga~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll 258 (373)
T 2fo1_E 184 YLMKAGADPTIYNKSERSALHQAA-----ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258 (373)
T ss_dssp HHHHTTCCSCCCCTTCCCHHHHHH-----HTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHCCCCCcccCCCCCCHHHHHH-----HCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence 887777777666666666666665 445555666665555 455555555555555555554 455555555
Q ss_pred hCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCC
Q psy9384 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQ 657 (978)
Q Consensus 578 ~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~ 657 (978)
++|++++..+. ...+..+..|.||||+|+..|+.+++++|++++.
T Consensus 259 ~~g~~~~~~~~-------------------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~---------- 303 (373)
T 2fo1_E 259 EKGAKVDYDGA-------------------------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG---------- 303 (373)
T ss_dssp HHTCCSSCCSG-------------------------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC----------
T ss_pred HCCCCcccccc-------------------------cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC----------
Confidence 55555443210 0012245677888888888888888888887642
Q ss_pred CCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCC
Q psy9384 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729 (978)
Q Consensus 658 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~ 729 (978)
.+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+.+|+.+++++|+++ +++
T Consensus 304 ---~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~ 371 (373)
T 2fo1_E 304 ---SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE 371 (373)
T ss_dssp ---CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred ---CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence 56777788888888888888888888888888888888888888888888888888888888875 543
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-37 Score=339.35 Aligned_cols=322 Identities=21% Similarity=0.262 Sum_probs=236.1
Q ss_pred CcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCce
Q psy9384 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458 (978)
Q Consensus 379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 458 (978)
..+|..|+..|+.+.++.++++...+. .-.+++.-+...|+++++++++... .+..|.||||+|+..+ .+
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~g~t~L~~Aa~~~-~~ 107 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFLGDFNHTNLQIPTE-----PEPESPIKLHTEAAGS-YA 107 (373)
T ss_dssp -----------------------------------------------------------------CCCHHHHHHHSS-SC
T ss_pred ccccccccCCccccchhhhhhhhcccc----CccccCCCCCccccccccccccccC-----CCCCCccHHHHHhcCC-ch
Confidence 445777778899999999988765543 2234667788889999999987653 4667899999999965 46
Q ss_pred eeeeccchHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChH
Q psy9384 459 VTIVLGPLCVVKLLLAAGAHVNAAD-SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537 (978)
Q Consensus 459 i~~~~~~~~vv~~Ll~~g~~~~~~~-~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 537 (978)
+ +++|+. .+++..+ ..|.||||+|+..|+.+++++|+..
T Consensus 108 ~---------~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~----------------------------- 147 (373)
T 2fo1_E 108 I---------TEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH----------------------------- 147 (373)
T ss_dssp C---------CSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHH-----------------------------
T ss_pred H---------HHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHH-----------------------------
Confidence 7 666654 5677777 7899999999999999998888743
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC---C
Q psy9384 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG---A 614 (978)
Q Consensus 538 ~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g---~ 614 (978)
.++.|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+ +
T Consensus 148 -~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 226 (373)
T 2fo1_E 148 -EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226 (373)
T ss_dssp -HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred -HHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCcccc
Confidence 346788899999999999999999999999999999999999999999999999999999999999999999988 7
Q ss_pred CCcccCCCCCcHHHHHHHcC---CHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHh
Q psy9384 615 YVDTIDAEGRTVLSVAAAQG---NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691 (978)
Q Consensus 615 ~~~~~~~~~~t~L~~A~~~~---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 691 (978)
+++..+..|.||||+|+..+ +.+++++|+++|.+++... ....+..+..|.||||+|+..|+.+++++|++
T Consensus 227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 300 (373)
T 2fo1_E 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG------AARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300 (373)
T ss_dssp TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS------GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH
T ss_pred ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccc------ccccCcccccCCCHHHHHHHhCCHHHHHHHHH
Confidence 88999999999999999988 8999999999998764321 12244577889999999999999999999998
Q ss_pred CC-CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHH
Q psy9384 692 AG-AKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLN 763 (978)
Q Consensus 692 ~g-~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~ 763 (978)
+| ++++..|..|.||||+|+..|+.++|++|+++ |++++.+|..|.|||++|+ ..++.+++++|++
T Consensus 301 ~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~-----~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQ-----ANNHHNIVDIFDR 367 (373)
T ss_dssp HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHH-----HTTCHHHHHHHHT
T ss_pred hcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHH-----HcCCHHHHHHHHh
Confidence 86 99999999999999999999999999999997 9999999999999999999 8999999999974
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=316.50 Aligned_cols=259 Identities=23% Similarity=0.289 Sum_probs=187.3
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHhc---------cCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC
Q psy9384 340 DSKNQSVLHKLCAENNINLLKTFLKSC---------EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE 410 (978)
Q Consensus 340 ~~~~~~~l~~a~~~~~~~~v~~ll~~~---------~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 410 (978)
...|.|++|+|+..|+.+.+..++... .....+..+..|+||||+||..|+.++|++|++.|++++..|..
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 356788999999999987777765421 01235567888999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHH
Q psy9384 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL 490 (978)
Q Consensus 411 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L 490 (978)
|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.++ +++|+++|++++..+ .|.|||
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~-~g~t~L 161 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC---------VNLLLQHGASVQPES-DLASPI 161 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCSSCSC-TTSCHH
T ss_pred CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHH---------HHHHHHCCCCCCCCC-CCCCHH
Confidence 9999999999999999999999999999888899999999999999888 999999998887544 488999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q psy9384 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570 (978)
Q Consensus 491 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~ 570 (978)
++|+..|+.+++++|+++|++++..+..|.|||++|+ ..++.+++++|++.|++++. +..|.||||+|+..++.
T Consensus 162 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~ 235 (285)
T 3d9h_A 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC-----ENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE 235 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH-----HTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH-----HcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH
Confidence 9999999999999999888888888877888887777 56777777777777777774 66677777777777777
Q ss_pred HHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCC
Q psy9384 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW-GAYV 616 (978)
Q Consensus 571 ~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 616 (978)
+++++|+++|++++..+..|.|||++|+ ++.+++++|+++ |+++
T Consensus 236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 236 ELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence 7777777777777777777777777777 345677777766 5544
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=313.95 Aligned_cols=253 Identities=26% Similarity=0.369 Sum_probs=214.9
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCC-----------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q psy9384 375 DKHGQTALNVAAHQGFVDAVQILLEAG-----------ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG 443 (978)
Q Consensus 375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g-----------~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~ 443 (978)
...|.|+||+|+..|+.+.+..++..+ ..++..+..|+||||+|+..|+.+++++|++.|++++..+..
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 356899999999999987777766543 235677889999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChh
Q psy9384 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523 (978)
Q Consensus 444 ~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 523 (978)
|.||||+|+..|+.++ +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+ .|.|||
T Consensus 92 g~t~L~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L 161 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSC---------VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPI 161 (285)
T ss_dssp CCCHHHHHHHTTCHHH---------HHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHH
T ss_pred CCCHHHHHHHCCcHHH---------HHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHH
Confidence 9999999999999999 999999999999999999999999999999999999999999988654 499999
Q ss_pred hhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCH
Q psy9384 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA 603 (978)
Q Consensus 524 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~ 603 (978)
++|+ ..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|++++. +..|.||||+|+..++.
T Consensus 162 ~~A~-----~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~ 235 (285)
T 3d9h_A 162 HEAA-----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE 235 (285)
T ss_dssp HHHH-----HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH
T ss_pred HHHH-----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH
Confidence 9999 67999999999999999999999999999999999999999999999999995 88899999999999999
Q ss_pred HHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9384 604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645 (978)
Q Consensus 604 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~ 645 (978)
+++++|+++|++++.++..|.|||++|+ ++.+++++|+++
T Consensus 236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 236 ELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 9999999999999999999999999999 567999999998
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=309.55 Aligned_cols=249 Identities=24% Similarity=0.318 Sum_probs=166.5
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~ 456 (978)
+|+||||+||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 35666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCCh
Q psy9384 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY 536 (978)
Q Consensus 457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~ 536 (978)
.++ +++|+++|++++. +..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+ ..++
T Consensus 82 ~~~---------v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~ 146 (261)
T 2xai_A 82 WDC---------VNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC-----ENQQ 146 (261)
T ss_dssp HHH---------HHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH-----HTTC
T ss_pred HHH---------HHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHH-----HhCC
Confidence 666 6666666666653 334666666666666666666666666666666666666666666 4566
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-
Q psy9384 537 AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY- 615 (978)
Q Consensus 537 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~- 615 (978)
.+++++|++.|++++. +..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+..+ +++++|++.+..
T Consensus 147 ~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~ 223 (261)
T 2xai_A 147 RACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPP 223 (261)
T ss_dssp HHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCC
T ss_pred HHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCc
Confidence 6666666666666664 556677777777777777777777777777777777777777777544 367777776543
Q ss_pred -------CcccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9384 616 -------VDTIDAEGRTVLSVAAAQGNIDVVNQLL 643 (978)
Q Consensus 616 -------~~~~~~~~~t~L~~A~~~~~~~iv~~Ll 643 (978)
.+.++..|.|++|.+......+.++.++
T Consensus 224 ~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 224 SLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp CHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred cHHHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 3356778888888888777777666655
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.4e-35 Score=303.65 Aligned_cols=250 Identities=24% Similarity=0.315 Sum_probs=230.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
.|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS--QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 57899999999999999999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~ 501 (978)
|+.+++++|+++|++++.. ..|.||||+|+..|+.++ +++|+++|++++..+..|.||||+|+..|+.++
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 149 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVEC---------VNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 149 (261)
T ss_dssp TCHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHH---------HHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHH
Confidence 9999999999999999864 568999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy9384 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581 (978)
Q Consensus 502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~ 581 (978)
+++|+++|++++. +..|.||||+|+ ..++.+++++|++.|++++.++..|.||+++|+..+ +++++|++++.
T Consensus 150 v~~Ll~~g~~~~~-~~~g~t~Lh~A~-----~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~ 221 (261)
T 2xai_A 150 VKKLLESGADVNQ-GKGQDSPLHAVA-----RTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREG 221 (261)
T ss_dssp HHHHHHHTCCTTC-CBTTBCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-C
T ss_pred HHHHHHcCCCCCC-CCCCCChHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccC
Confidence 9999999999985 788999999999 678999999999999999999999999999999655 58999999876
Q ss_pred Cc--------cCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384 582 DQ--------DHIDKSGRTPLWAAASMGHASCVALLLF 611 (978)
Q Consensus 582 ~~--------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~ 611 (978)
.. +.++..|.|++|.+.....++.++.++.
T Consensus 222 ~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 222 PPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp CCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 43 3567889999999998888887776653
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.2e-35 Score=302.85 Aligned_cols=226 Identities=30% Similarity=0.386 Sum_probs=91.8
Q ss_pred ccccCCCCCcHHHHHHHhC-------------CHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy9384 371 LELVDKHGQTALNVAAHQG-------------FVDAVQILLEAGANINH-TDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436 (978)
Q Consensus 371 ~~~~~~~~~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~ 436 (978)
++.+|..|.||||+|+..| +.+++++|++.|++++. .|..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3444555555555555544 45555555555555432 244555555555555555555555555555
Q ss_pred CCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCC-CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccC
Q psy9384 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515 (978)
Q Consensus 437 ~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 515 (978)
++..+..|.||||+|+..|+.++ +++|+++|+ +++..+..|.|||++|+..|+.+++++|+++|++++..
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 153 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGV---------FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHH---------HHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB
T ss_pred CCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc
Confidence 55555555555555555555555 555555544 44445555555555555555555555555555444444
Q ss_pred CCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHH
Q psy9384 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLW 595 (978)
Q Consensus 516 ~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~ 595 (978)
+..|.||||+|+ ..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||++
T Consensus 154 d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 154 DDLGKSALHWAA-----AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228 (253)
T ss_dssp CTTSCBHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred CCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence 444444444443 233344444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHcCCHHHHHHHH
Q psy9384 596 AAASMGHASCVALLL 610 (978)
Q Consensus 596 ~A~~~~~~~~v~~Ll 610 (978)
+|+..|+.+++++|.
T Consensus 229 ~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 229 IAQERMHHDIVRLLD 243 (253)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 444444444444443
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=6.3e-36 Score=329.25 Aligned_cols=263 Identities=21% Similarity=0.206 Sum_probs=232.1
Q ss_pred CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384 368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA 447 (978)
Q Consensus 368 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~ 447 (978)
+.+.+..|..|.||||+||..|+.++|++|++.|++++..|..|.||||+|+..|+.++|++|+++|++++. ..|.||
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~ 87 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKP 87 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCH
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCH
Confidence 345566778888999999999999999999999988888888899999999999999999999998886553 467889
Q ss_pred HHHHHhcCCceeeeeccchHHHHHHHHc----CCCCcc-----------------cCCCCCcHHHHHHHcC--CHHHHHH
Q psy9384 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAA----GAHVNA-----------------ADSEGRTALIASAYMG--HADIVSS 504 (978)
Q Consensus 448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~----g~~~~~-----------------~~~~~~t~L~~A~~~~--~~~~v~~ 504 (978)
||+|+..|+.++ +++|+++ |++++. .+..|.||||+|+..| +.+++++
T Consensus 88 L~~A~~~g~~~~---------v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~ 158 (364)
T 3ljn_A 88 IHLAVMANKTDL---------VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158 (364)
T ss_dssp HHHHHHTTCHHH---------HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred HHHHHHcCCHHH---------HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence 999999998888 8888888 777766 7888999999999999 9999999
Q ss_pred HHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy9384 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK-----VDHEDREGMTPLLVAAFEGHRDVCEILLEN 579 (978)
Q Consensus 505 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~-----~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~ 579 (978)
|+++|++++..+..|.|||++|+ ..++.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|+++
T Consensus 159 Ll~~ga~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 233 (364)
T 3ljn_A 159 LVQLGASPTAKDKADETPLMRAM-----EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233 (364)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT
T ss_pred HHHcCCCCcccCCCCCCHHHHHH-----HcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999999999999999 78999999999999998 999999999999999999999999999999
Q ss_pred CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc------------cCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT------------IDAEGRTVLSVAAAQGNIDVVNQLLDRG 646 (978)
Q Consensus 580 g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~~~~~~t~L~~A~~~~~~~iv~~Ll~~~ 646 (978)
|++++..+..|.|||++|+..|+.+++++|+++|++++. .+..++++++.|+..++.+.+..|+..+
T Consensus 234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999876432 3456789999999999888888888766
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.4e-34 Score=297.30 Aligned_cols=231 Identities=27% Similarity=0.312 Sum_probs=186.5
Q ss_pred ccccccCCCchHHHHHHHcC-------------CHHHHHHHHHhccCCCccc-cCCCCCcHHHHHHHhCCHHHHHHHHHC
Q psy9384 335 RITMFDSKNQSVLHKLCAEN-------------NINLLKTFLKSCEALDLEL-VDKHGQTALNVAAHQGFVDAVQILLEA 400 (978)
Q Consensus 335 ~~~~~~~~~~~~l~~a~~~~-------------~~~~v~~ll~~~~~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 400 (978)
.++.+|..|.||||+|+..| +.+++++|++ .+.+++. .+..|.||||+||..|+.++|++|++.
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 79 (253)
T ss_dssp ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH--ccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 35678899999999999977 8999999999 6777654 589999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCC
Q psy9384 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHV 479 (978)
Q Consensus 401 g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~ 479 (978)
|++++..+..|.||||+|+..|+.+++++|+++|. +++..+..|.||||+|+..|+.++ +++|+++|+++
T Consensus 80 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~ 150 (253)
T 1yyh_A 80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM---------LEDLINSHADV 150 (253)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSH---------HHHHHHTTCCT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHH---------HHHHHHcCCCC
Confidence 99999999999999999999999999999999997 899999999999999999999999 99999999999
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCC
Q psy9384 480 NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT 559 (978)
Q Consensus 480 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t 559 (978)
+..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+ ..++.+++++|++.|++++..+..|.|
T Consensus 151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~-----~~~~~~~v~~Ll~~ga~~~~~d~~g~t 225 (253)
T 1yyh_A 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA-----REGSYETAKVLLDHFANRDITDHMDRL 225 (253)
T ss_dssp TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-----HCCCHHHHHHHHHcCCCccccccCCCC
Confidence 999999999999999999999999999999999999999999999999 678999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy9384 560 PLLVAAFEGHRDVCEILLENEA 581 (978)
Q Consensus 560 ~L~~a~~~~~~~iv~~Ll~~g~ 581 (978)
|+++|+..|+.+++++|.....
T Consensus 226 pl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 226 PRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHHHHhh
Confidence 9999999999999999997644
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.7e-35 Score=325.79 Aligned_cols=264 Identities=20% Similarity=0.233 Sum_probs=240.5
Q ss_pred ccccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384 335 RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTP 414 (978)
Q Consensus 335 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~ 414 (978)
.....|..|.|+||+|+..|+.++|++|++ .+.+++..|..|.||||+||..|+.++|++|++.|++++. ..|.||
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~ 87 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKP 87 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCH
Confidence 344567788999999999999999999999 7899999999999999999999999999999999997654 468999
Q ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCc-----------------CCCCCCcHHHHHHhcC--CceeeeeccchHHHHH
Q psy9384 415 LRSASWGGHSAVVKLLLQS----GADVNC-----------------SDMGGRTALRAAAWGG--HLEVTIVLGPLCVVKL 471 (978)
Q Consensus 415 L~~A~~~g~~~iv~~Ll~~----g~~~~~-----------------~~~~~~t~l~~A~~~~--~~~i~~~~~~~~vv~~ 471 (978)
||+|+..|+.+++++|+++ |++++. .+..|.||||+|+..| +.++ +++
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~---------v~~ 158 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEM---------IKI 158 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHH---------HHH
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHH---------HHH
Confidence 9999999999999999998 777766 7788999999999999 8898 999
Q ss_pred HHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CccCCCCCCChhhhhhhccCCCCChHHHHHHHHhC
Q psy9384 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD-----INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546 (978)
Q Consensus 472 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~ 546 (978)
|+++|++++..+..|.|||++|+..|+.+++++|+++|++ ++..+..|.||||+|+ ..++.+++++|+++
T Consensus 159 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~ 233 (364)
T 3ljn_A 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI-----LINWEDVAMRFVEM 233 (364)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHH-----TTTCHHHHHHHHTT
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHH-----HcCCHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998 9999999999999999 78999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccC------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9384 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH------------IDKSGRTPLWAAASMGHASCVALLLFWGA 614 (978)
Q Consensus 547 g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~------------~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~ 614 (978)
|++++..+..|.|||++|+..|+.+++++|+++|++++. .+..+++|++.|+..++.+.+..|+..+.
T Consensus 234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~ 313 (364)
T 3ljn_A 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999866422 35567899999999998888888887765
Q ss_pred CC
Q psy9384 615 YV 616 (978)
Q Consensus 615 ~~ 616 (978)
+.
T Consensus 314 ~~ 315 (364)
T 3ljn_A 314 DE 315 (364)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1e-33 Score=291.29 Aligned_cols=222 Identities=33% Similarity=0.465 Sum_probs=161.1
Q ss_pred CccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy9384 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALR 449 (978)
Q Consensus 370 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~ 449 (978)
+++..+..|.||||+||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 55677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCceeeeeccchHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhh
Q psy9384 450 AAAWGGHLEVTIVLGPLCVVKLLLAAG-AHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528 (978)
Q Consensus 450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g-~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~ 528 (978)
+|+..|+.++ +++|++.| .+++..+..|.|||++|+..++.+++++|+++|++++..+..|.|||++|+
T Consensus 83 ~A~~~~~~~~---------~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~- 152 (237)
T 3b7b_A 83 LAAKKGHYEV---------VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA- 152 (237)
T ss_dssp HHHHTTCHHH---------HHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred HHHHcCCHHH---------HHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH-
Confidence 8888888887 88888887 777777778888888888888888888888877777666666666555555
Q ss_pred ccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHH
Q psy9384 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605 (978)
Q Consensus 529 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~ 605 (978)
..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+.+++.+.
T Consensus 153 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 153 ----FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp ----HHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred ----HCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555555555555433
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.4e-34 Score=294.99 Aligned_cols=226 Identities=27% Similarity=0.313 Sum_probs=142.4
Q ss_pred cccCCCCCcHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384 372 ELVDKHGQTALNVAAHQGFVDAVQILLE----AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA 447 (978)
Q Consensus 372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~ 447 (978)
+.+|..|.||||+||..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3467777788888888888887777776 677777777777888888888888888888888777777777777777
Q ss_pred HHHHHhcCCceeeeeccchHHHHHHHHcCC----CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCC-CCCCCh
Q psy9384 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGA----HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-NDGRTA 522 (978)
Q Consensus 448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~----~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~ 522 (978)
||+|+..|+.++ +++|++.++ +++..+..|.|||++|+..|+.+++++|+++|++++..+ ..|.||
T Consensus 83 l~~A~~~~~~~~---------~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~ 153 (241)
T 1k1a_A 83 AHLACEHRSPTC---------LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP 153 (241)
T ss_dssp HHHHHHTTCHHH---------HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCH
T ss_pred HHHHHHcCCHHH---------HHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcH
Confidence 777777777777 777777776 666667777777777777777777777777776666554 344444
Q ss_pred hhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC
Q psy9384 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602 (978)
Q Consensus 523 l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~ 602 (978)
||+|+ ..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++
T Consensus 154 L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~ 228 (241)
T 1k1a_A 154 LIHAV-----ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 228 (241)
T ss_dssp HHHHH-----HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred HHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCc
Confidence 44444 3344444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHH
Q psy9384 603 ASCVALLLF 611 (978)
Q Consensus 603 ~~~v~~Ll~ 611 (978)
.++++.|.+
T Consensus 229 ~~i~~~l~~ 237 (241)
T 1k1a_A 229 IDILRGKAT 237 (241)
T ss_dssp HHHHTC---
T ss_pred HHHHhhhcc
Confidence 444444443
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7e-33 Score=284.95 Aligned_cols=215 Identities=33% Similarity=0.458 Sum_probs=119.7
Q ss_pred CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCC
Q psy9384 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557 (978)
Q Consensus 478 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~ 557 (978)
+++..+..|.|||++|+..|+.+++++|+++|++++..+..|.|||++|+ ..++.+++++|++.|++++..+..|
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g 77 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA-----ENNHLEAVKYLIKAGALVDPKDAEG 77 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH-----HTTCHHHHHHHHTTTCCCCCCCTTS
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHH-----HhCCHHHHHHHHhCCCCCCCCCCCC
Confidence 45556667777777777777777777777777666655555555555555 3444555555555555444444444
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCcccCCCCCcHHHHHHHcCCH
Q psy9384 558 MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG-AYVDTIDAEGRTVLSVAAAQGNI 636 (978)
Q Consensus 558 ~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~A~~~~~~ 636 (978)
. ||||.|+..|+.+++++|++.| .+++..+..|.||||+|+..++.
T Consensus 78 ~---------------------------------t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 124 (237)
T 3b7b_A 78 S---------------------------------TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124 (237)
T ss_dssp C---------------------------------CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred C---------------------------------cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH
Confidence 4 4455554445555555555444 44444445555555555555555
Q ss_pred HHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH
Q psy9384 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716 (978)
Q Consensus 637 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~ 716 (978)
+++++|+++| .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus 125 ~~~~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 190 (237)
T 3b7b_A 125 DLVKLLLSKG--------------SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190 (237)
T ss_dssp HHHHHHHHTT--------------CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHHCC--------------CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 5555555555 44444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384 717 HLVEMFLEQYEANVNQKSHDGRTALRVNM 745 (978)
Q Consensus 717 ~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~ 745 (978)
+++++|+++ |++++.+|..|.|||++|+
T Consensus 191 ~~v~~Ll~~-gad~~~~d~~g~t~l~~A~ 218 (237)
T 3b7b_A 191 DCVVLFLSR-DSDVTLKNKEGETPLQCAS 218 (237)
T ss_dssp HHHHHHHTT-TCCTTCCCTTSCCHHHHSC
T ss_pred hHHHHHHHc-CCCCCccCCCCCCHHHHHH
Confidence 555555554 5555555555555555555
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.8e-33 Score=286.73 Aligned_cols=226 Identities=30% Similarity=0.390 Sum_probs=173.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
.+.++|+.|+..|+++.++++++. .+...+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHh-chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 356778888888888888888874 2334566777888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~ 501 (978)
|+.+++++|+++|++++..+..|.||||+|+..++.++ +++|+++|++++..+..|.||||+|+..|+.++
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 154 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI---------AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 88888888888888888888888888888888888877 888888888888888888888888888888888
Q ss_pred HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy9384 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581 (978)
Q Consensus 502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~ 581 (978)
+++|+++|++++.++..|.|||++|+ ..++.+++++|++.|++++.++..|.||+++|+..++.+++++|.++|+
T Consensus 155 v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 155 VHILLFYKASTNIQDTEGNTPLHLAC-----DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp HHHHHHTTCCSCCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccccCCCCCCHHHHHH-----HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 88888887777777777777777766 5566677777777777666666666677777666666666666666554
Q ss_pred C
Q psy9384 582 D 582 (978)
Q Consensus 582 ~ 582 (978)
+
T Consensus 230 ~ 230 (231)
T 3aji_A 230 S 230 (231)
T ss_dssp C
T ss_pred c
Confidence 3
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.9e-33 Score=297.96 Aligned_cols=264 Identities=24% Similarity=0.248 Sum_probs=197.9
Q ss_pred ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384 371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGAN---INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA 447 (978)
Q Consensus 371 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~ 447 (978)
++..|..|.||||+||..|+.++|++|++.|++ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 456789999999999999999999999999888 78889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527 (978)
Q Consensus 448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 527 (978)
||+|+..|+.++ +++|+++|++......... +..+. ......+.++++.+.
T Consensus 82 L~~A~~~~~~~~---------v~~Ll~~~~~~~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~~ 132 (282)
T 1oy3_D 82 LHLACRVRAHTC---------ACVLLQPRPSHPRDASDTY------------------LTQSQ--DCTPDTSHAPAAVDS 132 (282)
T ss_dssp HHHHTTTTCHHH---------HHHHSSSCCSSCCCC--------------------------------------------
T ss_pred HHHHHHcCCcch---------hHhhhccCCCCchhhHHHH------------------hhccc--ccCcchhcchhhhcc
Confidence 999999999998 9999999877543221110 00000 011122334444443
Q ss_pred hccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCC-CCcHHHHHHHcCCHHHH
Q psy9384 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS-GRTPLWAAASMGHASCV 606 (978)
Q Consensus 528 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~-~~t~L~~A~~~~~~~~v 606 (978)
. ..........+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++
T Consensus 133 ~----~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v 208 (282)
T 1oy3_D 133 Q----PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208 (282)
T ss_dssp ---------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred c----cccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHH
Confidence 2 223334455556667788889999999999999999999999999999999988854 99999999999999999
Q ss_pred HHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcC
Q psy9384 607 ALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681 (978)
Q Consensus 607 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 681 (978)
++|+++|++++.++..|.||||+|+..++.+++++|+++| .+++.++..|.|||++|....
T Consensus 209 ~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g--------------a~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG--------------APEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT--------------CCCCCCC--------------
T ss_pred HHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC--------------CCcCcCCCcccccccccCCcc
Confidence 9999999999999999999999999999999999999999 788899999999999987654
No 24
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.5e-33 Score=297.05 Aligned_cols=251 Identities=23% Similarity=0.194 Sum_probs=153.9
Q ss_pred cccccCCCchHHHHHHHcCCHHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCC
Q psy9384 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALD---LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGW 412 (978)
Q Consensus 336 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 412 (978)
++..|..|.||||+|+..|+.+++++|++ .+.+ ++..+..|.||||+||..|+.++|++|+++|++++..+..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~ 79 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH 79 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHh--cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 45678899999999999999999999999 5555 788899999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCcCCC-------------CCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCC
Q psy9384 413 TPLRSASWGGHSAVVKLLLQSGADVNCSDM-------------GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHV 479 (978)
Q Consensus 413 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~-------------~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~ 479 (978)
||||+|+..|+.+++++|+++|++...... .+.++++.++..+.... +...+...+.++
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 151 (282)
T 1oy3_D 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE--------EEPRDEDWRLQL 151 (282)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------------CCCGGGGT
T ss_pred CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchh--------hhhhhhhhhhcC
Confidence 999999999999999999999876543211 12233333332222211 023333344445
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCC
Q psy9384 480 NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT 559 (978)
Q Consensus 480 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t 559 (978)
+..+..|.||||+|+..|+.+++++|+++|++++..+.. .|.|
T Consensus 152 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------------------------------~g~t 194 (282)
T 1oy3_D 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT-------------------------------------CGRT 194 (282)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-------------------------------------TCCC
T ss_pred CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-------------------------------------CCcC
Confidence 555555555555555555555555555555555444422 2455
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHc
Q psy9384 560 PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633 (978)
Q Consensus 560 ~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 633 (978)
|||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|...
T Consensus 195 pL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555443
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.2e-32 Score=284.10 Aligned_cols=231 Identities=29% Similarity=0.360 Sum_probs=181.7
Q ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcH
Q psy9384 551 DHEDREGMTPLLVAAFEGHRDVCEILLE----NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTV 626 (978)
Q Consensus 551 ~~~~~~~~t~L~~a~~~~~~~iv~~Ll~----~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 626 (978)
+.+|..|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3456778888888888888888888876 678888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCc
Q psy9384 627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD-NDGRA 705 (978)
Q Consensus 627 L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t 705 (978)
||+|+..++.+++++|++.+... ..+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.|
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~----------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t 152 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPG----------TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS 152 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTT----------SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCc----------cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCc
Confidence 88888888888888888877311 13666677788888888888888888888888888888877 67888
Q ss_pred HHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCC
Q psy9384 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTN 785 (978)
Q Consensus 706 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~ 785 (978)
|||+|+..|+.+++++|+++ |++++.++..|.||||+|+ ..++.+++++|+ ++| ++++..+..|.
T Consensus 153 ~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll----~~g-----a~~~~~~~~g~ 217 (241)
T 1k1a_A 153 PLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSAS-----GRGLLPLVRTLV----RSG-----ADSSLKNCHND 217 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHH-----HHTCHHHHHHHH----HTT-----CCTTCCCTTSC
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHH----hcC-----CCCCCcCCCCC
Confidence 88888888888888888886 8888888888888888888 778888888888 888 88888888888
Q ss_pred ccchHHHhhchHHHHHHHHHh
Q psy9384 786 PHISRQEYKKRLHILRKIISI 806 (978)
Q Consensus 786 t~l~~a~~~g~~~i~~~l~~~ 806 (978)
||++.|+..|+.++++.|.+.
T Consensus 218 tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 218 TPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp CTTTTCSSHHHHHHHTC----
T ss_pred CHHHHHHhcCcHHHHhhhccC
Confidence 888877777777777777654
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.4e-33 Score=285.21 Aligned_cols=226 Identities=31% Similarity=0.305 Sum_probs=173.1
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHh
Q psy9384 375 DKHGQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453 (978)
Q Consensus 375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~ 453 (978)
+..+.+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 34578899999999999999999887643 66778889999999999999999999999999999888889999999999
Q ss_pred cCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCC
Q psy9384 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533 (978)
Q Consensus 454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~ 533 (978)
.|+.++ +++|+++|++++..+..|.|||++|+..++.+++++|+++|++++..+..+.|||++|+ .
T Consensus 83 ~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-----~ 148 (231)
T 3aji_A 83 AGXDEI---------VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA-----A 148 (231)
T ss_dssp HTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----H
T ss_pred cCHHHH---------HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH-----H
Confidence 999888 99999999999888888899999999999888888888888877776666666666666 4
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384 534 DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613 (978)
Q Consensus 534 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 613 (978)
.++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+..++.+++++|.+.|
T Consensus 149 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp HTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 45566666666666666666666666666666666666666666666666655666666666666555666666655554
Q ss_pred C
Q psy9384 614 A 614 (978)
Q Consensus 614 ~ 614 (978)
+
T Consensus 229 a 229 (231)
T 3aji_A 229 A 229 (231)
T ss_dssp H
T ss_pred c
Confidence 3
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=294.30 Aligned_cols=226 Identities=27% Similarity=0.337 Sum_probs=131.1
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHhCCCCCCcCCCCCC
Q psy9384 375 DKHGQTALNVAAHQGFVDAVQILLEAGAN--------INHTDCEGWTPLRSASWGGHS-AVVKLLLQSGADVNCSDMGGR 445 (978)
Q Consensus 375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~~~t~L~~A~~~g~~-~iv~~Ll~~g~~~~~~~~~~~ 445 (978)
|..+.++|+.||..|+.++|++|++.|.+ ++..+..+.|||++|+..++. .++++|++.|++++..+..|.
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~ 87 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGS 87 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSC
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCC
Confidence 44455666666666666666666666543 334455666777777666554 366667777777777777777
Q ss_pred cHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhh
Q psy9384 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525 (978)
Q Consensus 446 t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~ 525 (978)
||||+|+..|+.++ +++|++.|++++..+..|.||++.|+..++.+++++|+++|++++.++..|.||||+
T Consensus 88 TpLh~A~~~g~~~~---------v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~ 158 (269)
T 4b93_B 88 SPLHVAALHGRADL---------IPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIY 158 (269)
T ss_dssp CHHHHHHHTTCTTH---------HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred CHHHHHHHcCcHHH---------HHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 77777777777766 777777777777666677777777777777777777777777777666666777766
Q ss_pred hhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC-HH
Q psy9384 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH-AS 604 (978)
Q Consensus 526 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~-~~ 604 (978)
|+ ..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|+|||++|+++++ .+
T Consensus 159 A~-----~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~ 233 (269)
T 4b93_B 159 AC-----SGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIME 233 (269)
T ss_dssp HH-----HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHH
T ss_pred HH-----HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHH
Confidence 66 5566666777777777777677777777777777777777777777777777777777777777766554 24
Q ss_pred HHHHHHHCCC
Q psy9384 605 CVALLLFWGA 614 (978)
Q Consensus 605 ~v~~Ll~~g~ 614 (978)
+++.+...+.
T Consensus 234 lL~~l~~~~~ 243 (269)
T 4b93_B 234 LLQVVPSCVA 243 (269)
T ss_dssp HTTC------
T ss_pred HHHHHHHhch
Confidence 4444444433
No 28
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.8e-33 Score=296.50 Aligned_cols=242 Identities=21% Similarity=0.203 Sum_probs=202.2
Q ss_pred cCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9384 353 ENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432 (978)
Q Consensus 353 ~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~ 432 (978)
..+...+..++. .+ +++..|..|.||||+|+..|+.++|++|++.|++++..+ |.||||+|+..|+.+++++|++
T Consensus 9 ~~~~~~v~~lL~--~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 9 TWKSKQLKSFLS--SK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp GCCHHHHHHHHH--ST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHH
T ss_pred hcCHHHHHHHHH--hC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHH
Confidence 345555555555 22 578889999999999999999999999999999988874 8899999999999999999999
Q ss_pred CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384 433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG-RTALIASAYMGHADIVSSILEYDAD 511 (978)
Q Consensus 433 ~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~g~~ 511 (978)
+|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..| .|||++|+..|+.+++++|+++|++
T Consensus 84 ~ga~~~~~d~~g~t~L~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~ 154 (285)
T 3kea_A 84 SGLDDSQFDDKGNTALYYAVDSGNMQT---------VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 154 (285)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred CCCCCCCcCCCCCcHHHHHHHcCCHHH---------HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Confidence 999999999999999999999999998 999999999999988888 7999999999999999999999887
Q ss_pred CccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCccCCCCCC
Q psy9384 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTP-LLVAAFEGHRDVCEILLENEADQDHIDKSG 590 (978)
Q Consensus 512 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~ 590 (978)
.... ..|.||||+|+ ..++.+++++|++.|++++..+..|.|| ||+|+..++.+++++|+++|++++..+
T Consensus 155 ~~~~-~~g~t~L~~A~-----~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~--- 225 (285)
T 3kea_A 155 TFDL-AILLSCIHITI-----KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN--- 225 (285)
T ss_dssp TCCC-STHHHHHHHHH-----HTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT---
T ss_pred cccc-cCCccHHHHHH-----HcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC---
Confidence 6332 26788888888 6788888888888888888888888886 888888888888888888888887765
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCcccCC
Q psy9384 591 RTPLWAAASMGHASCVALLLFWGAYVDTIDA 621 (978)
Q Consensus 591 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 621 (978)
+.|+..++.+++++|+++|+++.....
T Consensus 226 ----~~a~~~~~~~iv~~Ll~~g~~~~~~~~ 252 (285)
T 3kea_A 226 ----LENVLLDDAEIAKMIIEKHVEYKSDSY 252 (285)
T ss_dssp ----GGGGTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred ----hhhhhcCCHHHHHHHHHcCCCCCCccc
Confidence 245667888888888888877654433
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=292.55 Aligned_cols=229 Identities=25% Similarity=0.333 Sum_probs=179.9
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHHhccCCC--------ccccCCCCCcHHHHHHHhCCH-HHHHHHHHCCCCCCCCCC
Q psy9384 339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALD--------LELVDKHGQTALNVAAHQGFV-DAVQILLEAGANINHTDC 409 (978)
Q Consensus 339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~--------~~~~~~~~~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~ 409 (978)
.|..+.++|+.|+..|++++|++|++ .+.+ ++..+..+.|||++|+..+.. .++++|++.|+++|..|.
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~--~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~ 84 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLE--WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ 84 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHT--CC----------------------------------------CCCCTTCCCT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHH--CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence 46667799999999999999999998 4432 456677899999999998776 488999999999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcH
Q psy9384 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489 (978)
Q Consensus 410 ~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~ 489 (978)
.|+||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.++ +++|++.|++++.++..|.||
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~---------~~~Ll~~g~~~n~~d~~g~Tp 155 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV---------VKCLLDSNAKPNKKDLSGNTP 155 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCSCCCCTTCCCH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHH---------HHHHHHCCCCCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy9384 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569 (978)
Q Consensus 490 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 569 (978)
||+|+..|+.+++++|+++|++++..+..|.||||+|+ ..++.+++++|++.|++++.++..|.|||++|+++++
T Consensus 156 L~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 156 LIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV-----IEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH-----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 99999999999999999999999999999999999999 7899999999999999999999999999999988775
Q ss_pred -HHHHHHHHhCCCCc
Q psy9384 570 -RDVCEILLENEADQ 583 (978)
Q Consensus 570 -~~iv~~Ll~~g~~~ 583 (978)
.++++.|...+...
T Consensus 231 i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 231 IMELLQVVPSCVASL 245 (269)
T ss_dssp HHHHTTC--------
T ss_pred HHHHHHHHHHhchhh
Confidence 34455555554443
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=278.89 Aligned_cols=232 Identities=25% Similarity=0.275 Sum_probs=176.7
Q ss_pred cccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCC-CCCcHHHH
Q psy9384 372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDM-GGRTALRA 450 (978)
Q Consensus 372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~-~~~t~l~~ 450 (978)
+..|..+.|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.... .+.|||++
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 44566777888888888888888888888888888888888888888888888888888888877664443 37788888
Q ss_pred HHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhcc
Q psy9384 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530 (978)
Q Consensus 451 A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 530 (978)
|+..|+.++ +++|++.|++++..+..|.|||+.|+..|+.+++++|+++|++++..+..|.||++.|+.
T Consensus 83 A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~-- 151 (240)
T 3eu9_A 83 ATRQGHLSM---------VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY-- 151 (240)
T ss_dssp HHHHTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH--
T ss_pred HHHcCCHHH---------HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH--
Confidence 888888777 888888888888777788888888888888888888888888777777777777777763
Q ss_pred CCCCChHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384 531 PSSDGYAKVVSILLEKGAKVDHEDR-EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609 (978)
Q Consensus 531 ~~~~~~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~L 609 (978)
.....+++++|++.|++++..+. .|.||||.|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++|
T Consensus 152 --~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 152 --RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp --HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred --hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 22335677777777777777665 677777777777777777777777777777777777777777777777777777
Q ss_pred HHCCCCC
Q psy9384 610 LFWGAYV 616 (978)
Q Consensus 610 l~~g~~~ 616 (978)
++.+...
T Consensus 230 ~~~~~~~ 236 (240)
T 3eu9_A 230 QEARQAK 236 (240)
T ss_dssp HHHC---
T ss_pred HHhhhcc
Confidence 7776543
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4e-32 Score=290.31 Aligned_cols=279 Identities=20% Similarity=0.161 Sum_probs=215.5
Q ss_pred HHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy9384 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708 (978)
Q Consensus 629 ~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 708 (978)
.++..+..+.++.++.....+...... ......+..+.|||+.|+..|+.+++++|+++|++++..|..|.||||
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 78 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVK-----RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALH 78 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCC-----CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHH
T ss_pred hHHHHHHHHHHHHHHcccccccccccc-----CcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 355666677777777665432221111 111123446789999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccc
Q psy9384 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHI 788 (978)
Q Consensus 709 ~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l 788 (978)
+|+..|+.+++++|+++ |++++..+..|.||||+|+ ..++.+++++|+ ++| ++++..+..|.|||
T Consensus 79 ~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~-----~~g~~~~v~~Ll----~~g-----~~~~~~~~~g~t~l 143 (299)
T 1s70_B 79 QACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA-----SCGYLDIAEYLI----SQG-----AHVGAVNSEGDTPL 143 (299)
T ss_dssp HHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHH----HTT-----CCTTCCCTTSCCHH
T ss_pred HHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH-----HcCCHHHHHHHH----hCC-----CCCCCcCCCCCCHH
Confidence 99999999999999997 9999999999999999999 999999999999 999 99999888888888
Q ss_pred hHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhhhcc
Q psy9384 789 SRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHF 868 (978)
Q Consensus 789 ~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g 868 (978)
+.|+..+..+++++++... |++++..+..+.++++. .+..++..|
T Consensus 144 ~~A~~~~~~~~~~~ll~~~--------------------------------~~~~~~~~~~~~~~~~~---~~~~~l~~~ 188 (299)
T 1s70_B 144 DIAEEEAMEELLQNEVNRQ--------------------------------GVDIEAARKEEERIMLR---DARQWLNSG 188 (299)
T ss_dssp HHCCSHHHHHHHHHHHHHH--------------------------------TCCHHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred HHHHhcchHHHHHHHHhhc--------------------------------CCCchhhhhhhhhHHHH---HHHHHHhcc
Confidence 8777777777777766543 22222222222222111 112222222
Q ss_pred C-CchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCCccc--
Q psy9384 869 S-RDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYF-- 945 (978)
Q Consensus 869 ~-~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~~-- 945 (978)
. .....+ ..| .||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+.+|+.+++++|+++|++++..
T Consensus 189 ~~~~~~~~-~~g----~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~ 263 (299)
T 1s70_B 189 HINDVRHA-KSG----GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263 (299)
T ss_dssp CCCCCCCT-TTC----CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred Ccchhhhc-CCC----CCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence 2 222233 667 99999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccchhhhhhhhcChhHHHHHHH
Q psy9384 946 VHYYYYYNSAKSGHETVLRLLK 967 (978)
Q Consensus 946 ~~~~~l~~A~~~~~~~~~~~L~ 967 (978)
.|.|||++|++....-+.+++.
T Consensus 264 ~g~t~l~~A~~~~~~~l~~l~~ 285 (299)
T 1s70_B 264 VGQTAFDVADEDILGYLEELQK 285 (299)
T ss_dssp TSCCTTTSCCSGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999998754444444443
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.98 E-value=1.6e-32 Score=289.23 Aligned_cols=233 Identities=16% Similarity=0.141 Sum_probs=213.7
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHH
Q psy9384 390 FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469 (978)
Q Consensus 390 ~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv 469 (978)
..++.++|.+. +++.+|..|.||||+|+..|+.+++++|+++|++++.. +|.||||+|+..|+.++ +
T Consensus 12 ~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~---------v 78 (285)
T 3kea_A 12 SKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKI---------V 78 (285)
T ss_dssp HHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHH---------H
T ss_pred HHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHH---------H
Confidence 34455555554 57889999999999999999999999999999999887 48999999999999999 9
Q ss_pred HHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCC-CChhhhhhhccCCCCChHHHHHHHHhCCC
Q psy9384 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG-RTALSVSALCVPSSDGYAKVVSILLEKGA 548 (978)
Q Consensus 470 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~ 548 (978)
++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..| .|||++|+ ..++.+++++|++.|.
T Consensus 79 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~-----~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 79 KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-----MLNDVSIVSYFLSEIP 153 (285)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH-----HTTCHHHHHHHHTTSC
T ss_pred HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999 79999999 7899999999999998
Q ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q psy9384 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP-LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL 627 (978)
Q Consensus 549 ~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 627 (978)
+.... ..|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..++.+++++|+++|++++..+.
T Consensus 154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~------ 226 (285)
T 3kea_A 154 STFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL------ 226 (285)
T ss_dssp TTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG------
T ss_pred ccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh------
Confidence 77332 278999999999999999999999999999999999998 9999999999999999999999998773
Q ss_pred HHHHHcCCHHHHHHHHHCCCc
Q psy9384 628 SVAAAQGNIDVVNQLLDRGMI 648 (978)
Q Consensus 628 ~~A~~~~~~~iv~~Ll~~~~~ 648 (978)
.|+..|+.+++++|+++|.+
T Consensus 227 -~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 227 -ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp -GGGTTTCHHHHHHHHHHHHH
T ss_pred -hhhhcCCHHHHHHHHHcCCC
Confidence 56789999999999999943
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=2.2e-32 Score=292.30 Aligned_cols=275 Identities=26% Similarity=0.347 Sum_probs=230.6
Q ss_pred HHHHcCCHHHHHHHHHhccCCCc-------cccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 349 KLCAENNINLLKTFLKSCEALDL-------ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 349 ~a~~~~~~~~v~~ll~~~~~~~~-------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
.++..++.+.++.++.+...... ...+..+.||||.||..|+.++|++|++.|++++..+..|.||||+|+..
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 46677788888888874222211 11233567999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~ 501 (978)
|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..|.|||++|+..++.++
T Consensus 84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~---------v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 154 (299)
T 1s70_B 84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI---------AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH---------HHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHc-CCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy9384 502 VSSILEY-DADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579 (978)
Q Consensus 502 v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~ 579 (978)
+++++.. +.+++.....+.+++ ...+..++.. .......+..|.||||+|+..|+.+++++|+++
T Consensus 155 ~~~ll~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 221 (299)
T 1s70_B 155 LQNEVNRQGVDIEAARKEEERIM-------------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221 (299)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-------------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhhcCCCchhhhhhhhhHH-------------HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence 9998864 555543322221111 2223334444 444555667899999999999999999999999
Q ss_pred CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646 (978)
Q Consensus 580 g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~ 646 (978)
|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|++. ..+.++.+++..
T Consensus 222 g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~ 287 (299)
T 1s70_B 222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKKQ 287 (299)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHHT
T ss_pred CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999764 456666666543
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.98 E-value=1.9e-31 Score=275.07 Aligned_cols=232 Identities=28% Similarity=0.337 Sum_probs=215.7
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHH
Q psy9384 337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPL 415 (978)
Q Consensus 337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L 415 (978)
+..|..+.++|+.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|.+++..+ ..|.|||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence 3457778899999999999999999999 889999999999999999999999999999999999887555 4499999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q psy9384 416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY 495 (978)
Q Consensus 416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~ 495 (978)
|+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.++ +++|+++|++++..+..|.|||+.|+.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~---------~~~Ll~~~~~~~~~~~~g~t~l~~a~~ 151 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI---------VAYLIAKGQDVDMMDQNGMTPLMWAAY 151 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHH---------HHHHHhcCCCccccCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999997
Q ss_pred cCC-HHHHHHHHHcCCCCccCCC-CCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy9384 496 MGH-ADIVSSILEYDADINQQDN-DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC 573 (978)
Q Consensus 496 ~~~-~~~v~~Ll~~g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv 573 (978)
.++ .+++++|++.|++++..+. .|.|||++|+ ..++.+++++|++.|++++..+..|.||+++|+..|+.+++
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v 226 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV-----LAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI 226 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHH-----HHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence 666 8999999999999999987 8999999999 67899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcc
Q psy9384 574 EILLENEADQD 584 (978)
Q Consensus 574 ~~Ll~~g~~~~ 584 (978)
++|++++....
T Consensus 227 ~~L~~~~~~~~ 237 (240)
T 3eu9_A 227 NHLQEARQAKG 237 (240)
T ss_dssp HHHHHHC----
T ss_pred HHHHHhhhccC
Confidence 99999987653
No 35
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=9.2e-34 Score=305.17 Aligned_cols=291 Identities=15% Similarity=0.062 Sum_probs=159.0
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCc
Q psy9384 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVD 617 (978)
Q Consensus 538 ~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 617 (978)
+++++|+++|++++..+..|.++++ |+.+++++|+++|++++. ++++.|+..... ..-.
T Consensus 33 dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~----------~~~~ 91 (327)
T 1sw6_A 33 DLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSS----------NRNS 91 (327)
T ss_dssp TCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------------
T ss_pred chHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhcccc----------cccc
Confidence 4567777777777777666766655 667777777777666432 344444322100 0000
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccc-cCCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q psy9384 618 TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH-RDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696 (978)
Q Consensus 618 ~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 696 (978)
.......+.+|.|+..+..+++++|++.| .++|. ++..|+||||+|+..|+.+++++|+++|+++
T Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~g--------------~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~ 157 (327)
T 1sw6_A 92 EGGSSNQQQQHVSFDSLLQEVNDAFPNTQ--------------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR 157 (327)
T ss_dssp ------------CHHHHHHHHHHHCTTSC--------------CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cccCCccchhHHHHHhhHHHHHHHHHhcC--------------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 01111123345666666666777777666 56666 6667777777777777777777777777777
Q ss_pred CCCCCCCCcHHHHHHHCCC---HHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCc
Q psy9384 697 DQVDNDGRAPLILAAQDGH---YHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLT 773 (978)
Q Consensus 697 ~~~d~~g~t~L~~A~~~~~---~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~ 773 (978)
+..|..|.||||+|+..|+ .++++.|++....+++.++..|.||||+|+.... ..++.+++++|+ +.+
T Consensus 158 n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~-~~g~~~~v~~Ll----~~~---- 228 (327)
T 1sw6_A 158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG-MTGCSAAAKYYL----DIL---- 228 (327)
T ss_dssp TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHT-STTCHHHHHHHH----HHH----
T ss_pred CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcc-ccccHHHHHHHH----HHH----
Confidence 7777777777777777666 4566666665335666667777777777761100 055666666666 433
Q ss_pred ccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccc
Q psy9384 774 VEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQ 853 (978)
Q Consensus 774 ~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tp 853 (978)
.. +....+... +...+... |++++..+..|.||
T Consensus 229 -~~------------------------------------------~~~~~~~~~---i~~~~~~~-g~~~~~~~~~g~t~ 261 (327)
T 1sw6_A 229 -MG------------------------------------------WIVKKQNRP---IQSGTNEK-ESKPNDKNGERKDS 261 (327)
T ss_dssp -HH------------------------------------------HHHHGGGCC---EEEC-----------------CH
T ss_pred -HH------------------------------------------HHhcccchH---HHhhhhcc-cCCcccccccCCCh
Confidence 11 011112222 44445555 88888888888888
Q ss_pred cccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcC
Q psy9384 854 TSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSG 927 (978)
Q Consensus 854 l~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 927 (978)
||.|+. +++|+++ +++..+ ..| .||||+|+..|+.++|++|+++|++++.+|..|+||||+|+++|
T Consensus 262 L~~a~~-~~~Ll~~--~~n~~d-~~G----~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 262 ILENLD-LKWIIAN--MLNAQD-SNG----DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHCS-HHHHHHH--TTTCCC-TTS----CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred hHHHHH-HHHHHHh--CCCCCC-CCC----CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 887765 6677766 466666 667 77777777777777777777777777777777777777777654
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.98 E-value=1.6e-31 Score=271.88 Aligned_cols=213 Identities=29% Similarity=0.340 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHhccCCCcccc-CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9384 354 NNINLLKTFLKSCEALDLELV-DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432 (978)
Q Consensus 354 ~~~~~v~~ll~~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~ 432 (978)
|+.+++++|++ .+.+++.. |..|.||||+||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus 2 g~~~~i~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEE--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 44555566665 45555443 5666666666666666666666666666666666666666666666666666666666
Q ss_pred CCC-CCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384 433 SGA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD 511 (978)
Q Consensus 433 ~g~-~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 511 (978)
++. +++..+..+.||||+|+..++.++ +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~---------~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 150 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGM---------LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHH---------HHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 664 566666666666666666666666 6666666666666666666666666666666666666666666
Q ss_pred CccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy9384 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582 (978)
Q Consensus 512 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~ 582 (978)
++..+..|.|||++|+ ..++.+++++|++.|++++..+..|.||+++|+..++.+++++|+++|+.
T Consensus 151 ~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 151 KDMQNNREETPLFLAA-----REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp TTCCCTTCCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred CCCcCCCCcCHHHHHH-----HcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 6555555555555555 34555555555555555555555555555555555555555555555543
No 37
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=1.7e-31 Score=272.81 Aligned_cols=207 Identities=26% Similarity=0.313 Sum_probs=106.7
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCC--CCCCc-CCCCCCcHHHHHHh
Q psy9384 378 GQTALNVAAHQGFVDAVQILLEAGANIN-HTDCEGWTPLRSASWGGHSAVVKLLLQSG--ADVNC-SDMGGRTALRAAAW 453 (978)
Q Consensus 378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~-~~~~~~t~l~~A~~ 453 (978)
|.||||+||..|+.+++++|++.|.++. ..+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 3555566665566565555555554433 24555555666666555566666665555 33333 44455555555555
Q ss_pred cCCceeeeeccchHHHHHHHHcC--CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccC
Q psy9384 454 GGHLEVTIVLGPLCVVKLLLAAG--AHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531 (978)
Q Consensus 454 ~~~~~i~~~~~~~~vv~~Ll~~g--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 531 (978)
.|+.++ +++|+++| ++++..+..|.|||+.|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 82 ~~~~~~---------~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---- 148 (228)
T 2dzn_A 82 VGNLEV---------VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA---- 148 (228)
T ss_dssp HCCHHH---------HHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----
T ss_pred cCCHHH---------HHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH----
Confidence 555555 55555555 455555555555555555555555555555555555444444444444444
Q ss_pred CCCChHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCccCCCCCCCcHHHHHH
Q psy9384 532 SSDGYAKVVSILLEKG-AKVDHEDREGMTPLLVAAFEGHRDVCEILL-ENEADQDHIDKSGRTPLWAAA 598 (978)
Q Consensus 532 ~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll-~~g~~~~~~~~~~~t~L~~A~ 598 (978)
..++.+++++|++.| ++++..+..|.||||+|+..|+.+++++|+ +.|++++..+..|.||+++|+
T Consensus 149 -~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 149 -SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp -HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred -HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 333444444444444 444444444445555555555555555555 445555544555555555443
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.4e-31 Score=270.57 Aligned_cols=214 Identities=29% Similarity=0.362 Sum_probs=184.8
Q ss_pred CCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchH
Q psy9384 389 GFVDAVQILLEAGANINHT-DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLC 467 (978)
Q Consensus 389 g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~ 467 (978)
|+.+++++|++.|++++.. |..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~-------- 73 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV-------- 73 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH--------
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH--------
Confidence 6788899999999998765 7889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHcCC-CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhC
Q psy9384 468 VVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546 (978)
Q Consensus 468 vv~~Ll~~g~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~ 546 (978)
+++|++.+. +++..+..+.|||++|+..++.+++++|+++|++++..+..|.||||+|+ ..++.+++++|++.
T Consensus 74 -v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ 147 (223)
T 2f8y_A 74 -FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA-----AVNNVDAAVVLLKN 147 (223)
T ss_dssp -HHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHT
T ss_pred -HHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHH-----HcCCHHHHHHHHHc
Confidence 999999887 88888899999999999999999999999999998888888888888888 56778888888888
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9384 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616 (978)
Q Consensus 547 g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 616 (978)
|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||+++|+..++.+++++|+++|+..
T Consensus 148 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 8888888888888888888888888888888888888888888888888888888888888888877754
No 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=1.3e-30 Score=266.32 Aligned_cols=209 Identities=24% Similarity=0.324 Sum_probs=168.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy9384 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAA 565 (978)
Q Consensus 486 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~ 565 (978)
|.|||+.|+..|+.+++++|++.+.++. +..+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-------------------------------------~~~~~~g~t~L~~A~ 44 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLL-------------------------------------LQKDQDGRIPLHWSV 44 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGT-------------------------------------TCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCcccc-------------------------------------ccCCCCCCCHHHHHH
Confidence 4566777777777776666666654332 124566777888888
Q ss_pred HcCCHHHHHHHHhCC--CCccC-CCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy9384 566 FEGHRDVCEILLENE--ADQDH-IDKSGRTPLWAAASMGHASCVALLLFWG--AYVDTIDAEGRTVLSVAAAQGNIDVVN 640 (978)
Q Consensus 566 ~~~~~~iv~~Ll~~g--~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~~~~~iv~ 640 (978)
..|+.+++++|+++| .+++. .+..|.||||.|+..|+.+++++|++.| ++++..+..|.||||+|+..++.++++
T Consensus 45 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 124 (228)
T 2dzn_A 45 SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124 (228)
T ss_dssp HTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHH
Confidence 888888888888887 45544 6677888888888888888888888887 777888888888888888888888888
Q ss_pred HHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHCCCHHHH
Q psy9384 641 QLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG-AKVDQVDNDGRAPLILAAQDGHYHLV 719 (978)
Q Consensus 641 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~iv 719 (978)
+|+++| .+++.++..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++
T Consensus 125 ~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v 190 (228)
T 2dzn_A 125 FLIENG--------------ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190 (228)
T ss_dssp HHHHTT--------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHcC--------------CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHH
Confidence 888888 677788888889999999889999999999888 88888888899999999999999999
Q ss_pred HHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384 720 EMFLEQYEANVNQKSHDGRTALRVNM 745 (978)
Q Consensus 720 ~~Ll~~~~~~~~~~~~~g~t~L~~a~ 745 (978)
++|++.+|++++.+|..|.||+++|+
T Consensus 191 ~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 191 VLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp HHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred HHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 99994459999999999999999888
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=5.5e-32 Score=291.26 Aligned_cols=258 Identities=15% Similarity=0.089 Sum_probs=205.3
Q ss_pred HHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCC-----------------CCCCChhhhhhhccC
Q psy9384 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-----------------NDGRTALSVSALCVP 531 (978)
Q Consensus 469 v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------------~~~~t~l~~a~~~~~ 531 (978)
+++|++.|++++..+..|.++++ |+.+++++|+++|++++... ....+..+.++
T Consensus 35 v~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~---- 105 (327)
T 1sw6_A 35 TSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF---- 105 (327)
T ss_dssp CCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CH----
T ss_pred HHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHH----
Confidence 99999999999999999999977 99999999999998865411 01111224444
Q ss_pred CCCChHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC---HHHHH
Q psy9384 532 SSDGYAKVVSILLEKGAKVDH-EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH---ASCVA 607 (978)
Q Consensus 532 ~~~~~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~---~~~v~ 607 (978)
.....+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+ .++++
T Consensus 106 -~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~ 184 (327)
T 1sw6_A 106 -DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 184 (327)
T ss_dssp -HHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred -HhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHH
Confidence 45667899999999999999 89999999999999999999999999999999999999999999999998 67778
Q ss_pred HHHHCC-CCCcccCCCCCcHHHHHHH----cCCHHHHHHHHHCCCcccccc------CCCCCCCCCccccCCCCchHHHH
Q psy9384 608 LLLFWG-AYVDTIDAEGRTVLSVAAA----QGNIDVVNQLLDRGMILGCLA------GGRQTGSLDEQHRDNCGWTPLHY 676 (978)
Q Consensus 608 ~Ll~~g-~~~~~~~~~~~t~L~~A~~----~~~~~iv~~Ll~~~~~~~~~~------~~~~~~~~~~~~~~~~g~t~L~~ 676 (978)
.|++.+ ++++..+..|.||||+|+. .|+.+++++|++.+....... ........+++.++..|.||||.
T Consensus 185 ~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~ 264 (327)
T 1sw6_A 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 264 (327)
T ss_dssp HHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHH
T ss_pred HHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHH
Confidence 888776 6799999999999999999 899999999998742110000 00001127888899999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNM 745 (978)
Q Consensus 677 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~ 745 (978)
|+. +++|+++ +++..|..|.||||+|+..|+.++|++|+++ |++++.+|..|.||||+|+
T Consensus 265 a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 265 NLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp HCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred HHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHH
Confidence 985 8999998 6889999999999999999999999999997 9999999999999999998
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=2.2e-29 Score=257.80 Aligned_cols=193 Identities=26% Similarity=0.332 Sum_probs=124.0
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-----CcCCCCCCcHHHHH
Q psy9384 378 GQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV-----NCSDMGGRTALRAA 451 (978)
Q Consensus 378 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~-----~~~~~~~~t~l~~A 451 (978)
|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A 82 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence 44555555555555555555544 5555555555555555555555555555555554443 33344455555555
Q ss_pred HhcCCceeeeeccchHHHHHHHHcCCCCccc-------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCC
Q psy9384 452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA-------------DSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518 (978)
Q Consensus 452 ~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~-------------~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 518 (978)
+..|+.++ +++|+++|++++.. +..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus 83 ~~~~~~~~---------v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 83 VINQNVNL---------VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL 153 (232)
T ss_dssp HHTTCHHH---------HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHcCCHHH---------HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence 55555554 55555555554443 447888888888888888888888888888888888
Q ss_pred CCChhhhhhhccCCCCChHHHH----HHHHhCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy9384 519 GRTALSVSALCVPSSDGYAKVV----SILLEKGAKV------DHEDREGMTPLLVAAFEGHRDVCEILLENEADQD 584 (978)
Q Consensus 519 ~~t~l~~a~~~~~~~~~~~~~v----~~Ll~~g~~~------~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~ 584 (978)
|.||||+|+ ..++.+++ ++|++.|+++ +..+..|.|||++|+..|+.+++++|+++|....
T Consensus 154 g~t~L~~A~-----~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 154 GNTVLHILI-----LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp SCCHHHHHH-----TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHH-----HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 888888888 56777766 7888888776 3666777777777777777777777777765443
No 42
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=4.5e-29 Score=238.05 Aligned_cols=159 Identities=38% Similarity=0.580 Sum_probs=141.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS 424 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~ 424 (978)
+.|+.||..|+.++|++|++ .|++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~--~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence 46889999999999999998 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384 425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504 (978)
Q Consensus 425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~ 504 (978)
+++++|+++|++++.++..|.||||+|+..|+.++ +++|+++|++++.++..|.|||++|+..|+.+++++
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~---------v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~ 154 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV---------VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL 154 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHcCCCCcc
Q psy9384 505 ILEYDADINQ 514 (978)
Q Consensus 505 Ll~~g~~~~~ 514 (978)
|+++|++++-
T Consensus 155 Ll~~GA~ie~ 164 (169)
T 4gpm_A 155 LEKQGGWLEH 164 (169)
T ss_dssp HHTC------
T ss_pred HHHCCCCcCC
Confidence 9999988753
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=5.4e-30 Score=262.87 Aligned_cols=211 Identities=26% Similarity=0.303 Sum_probs=162.7
Q ss_pred cccCCCchHHHHHHHcCCHHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy9384 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCE--ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPL 415 (978)
Q Consensus 338 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~--~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L 415 (978)
..|..|.||||+|+..|+.+++++|++... +.+++..+..|.||||+|+..|+.++|++|+++|++++..+..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 356778888888888888888888877322 236777888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHhCCCC------CCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCC-CCCc
Q psy9384 416 RSASWGGHSAVVKLLLQSGAD------VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS-EGRT 488 (978)
Q Consensus 416 ~~A~~~g~~~iv~~Ll~~g~~------~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~-~~~t 488 (978)
|+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.++ +++|+++|++++..+. .|.|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~~g~t 153 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI---------VELLVSLGADVNAQEPCNGRT 153 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH---------HHHHHHHTCCTTCCCTTTCCC
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCCCCCCCCCC
Confidence 888888888888888888765 45566678888888888888887 8888888888887776 7888
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCC--CCCCCCCCHHH
Q psy9384 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVD--HEDREGMTPLL 562 (978)
Q Consensus 489 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~--~~~~~~~t~L~ 562 (978)
|||+|+..|+.+++++|+++|++++.++..|.||+++|+ ..++.+++++|+++|++.. .++..+.++..
T Consensus 154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~-----~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~ 224 (236)
T 1ikn_D 154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW-----GRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT-----TSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHH-----ccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence 888888888888888888888888888888888888887 6777888888888887654 44455555443
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=1.9e-28 Score=244.58 Aligned_cols=196 Identities=29% Similarity=0.352 Sum_probs=138.2
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc
Q psy9384 376 KHGQTALNVAAHQGFVDAVQILLEAGA-NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454 (978)
Q Consensus 376 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 454 (978)
..+.||||.|+..|+.++++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 345677777777777777777776654 6677777777777777777777777777777777777777777777777777
Q ss_pred CCceeeeeccchHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCccCCCCCCChhhhhhhccCC
Q psy9384 455 GHLEVTIVLGPLCVVKLLL-AAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD-ADINQQDNDGRTALSVSALCVPS 532 (978)
Q Consensus 455 ~~~~i~~~~~~~~vv~~Ll-~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~l~~a~~~~~~ 532 (978)
|+.++ +++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+.....
T Consensus 83 ~~~~~---------~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 153 (201)
T 3hra_A 83 GRTEI---------LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153 (201)
T ss_dssp TCHHH---------HHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC
T ss_pred CCHHH---------HHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc
Confidence 77776 77777 455567767777777777777777777777777776 66776676777777776643222
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy9384 533 SDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580 (978)
Q Consensus 533 ~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g 580 (978)
..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|
T Consensus 154 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 154 NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp SHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 223467777777777777777777777777777777777777777765
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=1.5e-29 Score=259.62 Aligned_cols=219 Identities=21% Similarity=0.174 Sum_probs=185.5
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q psy9384 552 HEDREGMTPLLVAAFEGHRDVCEILLENEA----DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL 627 (978)
Q Consensus 552 ~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~----~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 627 (978)
..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 356788899999999999999998888765 6888888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcH
Q psy9384 628 SVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDN-DGRAP 706 (978)
Q Consensus 628 ~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~ 706 (978)
|+|+..|+.+++++|++.+..... ....+..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tp 154 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHL--------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSS--------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred HHHHHcCCHHHHHHHHhcccchhH--------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCH
Confidence 999999999999999998842110 023566788899999999999999999999999999999987 89999
Q ss_pred HHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccc--cccCCC
Q psy9384 707 LILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLF--TKFSTT 784 (978)
Q Consensus 707 L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--~~~~~g 784 (978)
||+|+..|+.+++++|+++ |++++.++..|.|||++|+ ..++.+++++|+ ++| ++.. ..+..|
T Consensus 155 L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~-----~~~~~~~~~~Ll----~~g-----a~~~~~~~~~~~ 219 (236)
T 1ikn_D 155 LHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTW-----GRPSTRIQQQLG----QLT-----LENLQMLPESED 219 (236)
T ss_dssp HHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCT-----TSSCHHHHHHHH----TTS-----CGGGSSCCCCCT
T ss_pred HHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHH-----ccCchHHHHHHH----Hcc-----hhhhhcCCccch
Confidence 9999999999999999997 9999999999999999999 889999999999 999 7655 566667
Q ss_pred CccchHHHh
Q psy9384 785 NPHISRQEY 793 (978)
Q Consensus 785 ~t~l~~a~~ 793 (978)
.++...+..
T Consensus 220 ~~~~~~~~~ 228 (236)
T 1ikn_D 220 EESYDTESE 228 (236)
T ss_dssp TTCCCCC--
T ss_pred HHHHhhhcc
Confidence 777665543
No 46
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=2.9e-28 Score=249.41 Aligned_cols=203 Identities=24% Similarity=0.270 Sum_probs=175.8
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----cccCCCCCcHHHH
Q psy9384 556 EGMTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV-----DTIDAEGRTVLSV 629 (978)
Q Consensus 556 ~~~t~L~~a~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~~t~L~~ 629 (978)
.|.||||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 477899999999999999999987 9999999999999999999999999999999998876 5567789999999
Q ss_pred HHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy9384 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL 709 (978)
Q Consensus 630 A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 709 (978)
|+..|+.+++++|+++|++++....... .....+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV-FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG-GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc-eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 9999999999999999855433221111 112233345589999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHH----HHHHhhcCCCC------cCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384 710 AAQDGHYHLV----EMFLEQYEANV------NQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL 769 (978)
Q Consensus 710 A~~~~~~~iv----~~Ll~~~~~~~------~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~ 769 (978)
|+..|+.+++ ++|++. |+++ +.+|..|.|||++|+ ..++.+++++|+ ++|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g~tpl~~A~-----~~g~~~~v~~Ll----~~g 220 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLTPFKLAG-----VEGNIVMFQHLM----QKR 220 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTSCCHHHHHH-----HHTCHHHHHHHH----HHH
T ss_pred HHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCCCCHHHHHH-----HcCCHHHHHHHH----hcC
Confidence 9999999988 999997 8887 588999999999999 999999999999 877
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=1.5e-28 Score=234.31 Aligned_cols=159 Identities=47% Similarity=0.683 Sum_probs=136.5
Q ss_pred cHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459 (978)
Q Consensus 380 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i 459 (978)
++|+.||+.|+.++|++|++.|+++|.+|..|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHH
Q psy9384 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKV 539 (978)
Q Consensus 460 ~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ 539 (978)
+++|+++|+++|.++..|.||||+|+..|+.+++++|+++|++++.++..|+|||++|+ ..++.++
T Consensus 86 ---------v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~-----~~g~~~i 151 (169)
T 4gpm_A 86 ---------VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR-----EHGNEEV 151 (169)
T ss_dssp ---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHH
T ss_pred ---------HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH-----HcCCHHH
Confidence 99999999999999999999999999999999999999988888888887878777777 5677777
Q ss_pred HHHHHhCCCCCCC
Q psy9384 540 VSILLEKGAKVDH 552 (978)
Q Consensus 540 v~~Ll~~g~~~~~ 552 (978)
+++|+++|++++.
T Consensus 152 v~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 152 VKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHTC------
T ss_pred HHHHHHCCCCcCC
Confidence 7777777777653
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=2e-27 Score=237.10 Aligned_cols=192 Identities=23% Similarity=0.273 Sum_probs=171.5
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCC-CccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHc
Q psy9384 555 REGMTPLLVAAFEGHRDVCEILLENEA-DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633 (978)
Q Consensus 555 ~~~~t~L~~a~~~~~~~iv~~Ll~~g~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 633 (978)
..+.+||+.|+..|+.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 356789999999999999999988876 8888888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHH
Q psy9384 634 GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG-AKVDQVDNDGRAPLILAAQ 712 (978)
Q Consensus 634 ~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~ 712 (978)
|+.+++++|++.+. .+++..+..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+.
T Consensus 83 ~~~~~~~~Ll~~~~-------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 149 (201)
T 3hra_A 83 GRTEILAYMLKHAT-------------PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149 (201)
T ss_dssp TCHHHHHHHHHHSC-------------CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHHhccC-------------cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH
Confidence 99999999995442 677888888999999999999999999999998 8999999999999999999
Q ss_pred CCC-----HHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384 713 DGH-----YHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL 769 (978)
Q Consensus 713 ~~~-----~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~ 769 (978)
.++ .+++++|+++ |++++.+|..|.|||++|+ ..++.+++++|+ ++|
T Consensus 150 ~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~-----~~~~~~~~~~Ll----~~G 201 (201)
T 3hra_A 150 LREGNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYAN-----QKGYTEISKILA----QYN 201 (201)
T ss_dssp SSCCSHHHHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHH----TCC
T ss_pred hccchhhHHHHHHHHHHC-CCCCCccCCCCCCHHHHHH-----HcCCHhHHHHHH----hcC
Confidence 887 8999999997 9999999999999999999 889999999998 654
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=1.6e-28 Score=255.35 Aligned_cols=194 Identities=27% Similarity=0.336 Sum_probs=153.3
Q ss_pred CCCcHHHHHHHhCCHH----HHHHHHHCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcC-----
Q psy9384 377 HGQTALNVAAHQGFVD----AVQILLEAGANINH----TDCEGWTPLRSASWG---GHSAVVKLLLQSGADVNCS----- 440 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~----- 440 (978)
.|+||||.||..|+.+ ++++|++.|++++. .|..|.||||+|+.. |+.+++++|++.|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3789999999999997 66777788999998 899999999999999 9999999999998776533
Q ss_pred ------CCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCC-------------CCcHHHHHHHcCCHHH
Q psy9384 441 ------DMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-------------GRTALIASAYMGHADI 501 (978)
Q Consensus 441 ------~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~-------------~~t~L~~A~~~~~~~~ 501 (978)
+..|.||||+|+..|+.++ +++|+++|++++..+.. |.||||+|+..|+.++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 151 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQC---------VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred cccccccccCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 3679999999999999999 99999999999988876 7888888888888888
Q ss_pred HHHHHH---cCCCCccCCCCCCChhhhhhhccCCCCChHH-------HHHHHHhCCCCC-------CCCCCCCCCHHHHH
Q psy9384 502 VSSILE---YDADINQQDNDGRTALSVSALCVPSSDGYAK-------VVSILLEKGAKV-------DHEDREGMTPLLVA 564 (978)
Q Consensus 502 v~~Ll~---~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~-------~v~~Ll~~g~~~-------~~~~~~~~t~L~~a 564 (978)
+++|++ +|++++.++..|+||||+|+.. ..++.+ ++++|++.|+++ +..+..|.|||++|
T Consensus 152 v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~---~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 152 VTYLLENPHQPASLEATDSLGNTVLHALVMI---ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228 (256)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHhccccCCCcCccCCCCCCHHHHHHHc---ccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence 888888 7777777777777777777621 145555 666666666666 55666666666666
Q ss_pred HHcCCHHHHHHHHhCCCC
Q psy9384 565 AFEGHRDVCEILLENEAD 582 (978)
Q Consensus 565 ~~~~~~~iv~~Ll~~g~~ 582 (978)
+..|+.+++++|+++|.+
T Consensus 229 ~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 229 AKEGKIEIFRHILQREFS 246 (256)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhCCCC
Confidence 666666666666665543
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=3.6e-28 Score=252.74 Aligned_cols=193 Identities=24% Similarity=0.291 Sum_probs=178.3
Q ss_pred CCchHHHHHHHcCCHH----HHHHHHHhccCCCccc----cCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCC----
Q psy9384 342 KNQSVLHKLCAENNIN----LLKTFLKSCEALDLEL----VDKHGQTALNVAAHQ---GFVDAVQILLEAGANINH---- 406 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~----~v~~ll~~~~~~~~~~----~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~---- 406 (978)
.|.|+||.|+..|+.+ +++++++ .+.+++. .|..|.||||+||.. |+.++|++|++.|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~--~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRW--NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHH--cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 3789999999999997 5677777 7888888 899999999999999 999999999999887663
Q ss_pred -------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC-------------CCcHHHHHHhcCCceeeeeccch
Q psy9384 407 -------TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG-------------GRTALRAAAWGGHLEVTIVLGPL 466 (978)
Q Consensus 407 -------~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-------------~~t~l~~A~~~~~~~i~~~~~~~ 466 (978)
.|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~------- 151 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV------- 151 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH-------
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHH-------
Confidence 3478999999999999999999999999999998876 9999999999999999
Q ss_pred HHHHHHHH---cCCCCcccCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------ccCCCCCCChhhhhh
Q psy9384 467 CVVKLLLA---AGAHVNAADSEGRTALIASAY--MGHAD-------IVSSILEYDADI-------NQQDNDGRTALSVSA 527 (978)
Q Consensus 467 ~vv~~Ll~---~g~~~~~~~~~~~t~L~~A~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~~~t~l~~a~ 527 (978)
+++|++ +|++++..+..|.||||+|+. .++.+ ++++|+++|+++ +.++..|.|||++|+
T Consensus 152 --v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~ 229 (256)
T 2etb_A 152 --VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA 229 (256)
T ss_dssp --HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHH
T ss_pred --HHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHH
Confidence 999999 999999999999999999999 88888 999999999999 899999999999999
Q ss_pred hccCCCCChHHHHHHHHhCCCCC
Q psy9384 528 LCVPSSDGYAKVVSILLEKGAKV 550 (978)
Q Consensus 528 ~~~~~~~~~~~~v~~Ll~~g~~~ 550 (978)
..++.+++++|+++|.+.
T Consensus 230 -----~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 230 -----KEGKIEIFRHILQREFSG 247 (256)
T ss_dssp -----HTTCHHHHHHHHHHHHHH
T ss_pred -----HhCCHHHHHHHHhCCCCC
Confidence 789999999999987653
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=1.3e-28 Score=258.61 Aligned_cols=205 Identities=27% Similarity=0.294 Sum_probs=149.0
Q ss_pred CCccccCCCCCcHHHHHHHhCCHHHHHHHHH----CCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC
Q psy9384 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLE----AGANIN----HTDCEGWTPLRSASWG---GHSAVVKLLLQSGADV 437 (978)
Q Consensus 369 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~ 437 (978)
+..+..|..|.||||+||..|+.++|+.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 4445677888999999999999998887776 566665 3577899999999987 8999999999987542
Q ss_pred -------C----cCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCC--------------CCCcHHHH
Q psy9384 438 -------N----CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS--------------EGRTALIA 492 (978)
Q Consensus 438 -------~----~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~--------------~~~t~L~~ 492 (978)
+ ..+..|.||||+|+..|+.++ +++|+++|++++..+. .|.||||+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~ 154 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTL---------VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSL 154 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHH---------HHHHHHCCCCcCccccccccccccccccccCCCCHHHH
Confidence 2 255689999999999999999 9999999999998886 67888888
Q ss_pred HHHcCCHHHHHHHHH---cCCCCccCCCCCCChhhhhhhccCCCCCh---------HHHHHHHHhCCCCCC-------CC
Q psy9384 493 SAYMGHADIVSSILE---YDADINQQDNDGRTALSVSALCVPSSDGY---------AKVVSILLEKGAKVD-------HE 553 (978)
Q Consensus 493 A~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~a~~~~~~~~~~---------~~~v~~Ll~~g~~~~-------~~ 553 (978)
|+..|+.+++++|++ +|++++.++..|+||||+|+. .++ .+++++|++.|++++ ..
T Consensus 155 A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~-----~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~ 229 (273)
T 2pnn_A 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE-----VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT 229 (273)
T ss_dssp HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH-----HCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCC
T ss_pred HHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHH-----ccCcchhHHHHHHHHHHHHHHhhhhccccccccccc
Confidence 888888888888888 777777777777777777773 222 466666666666664 25
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCC-CccCCC
Q psy9384 554 DREGMTPLLVAAFEGHRDVCEILLENEA-DQDHID 587 (978)
Q Consensus 554 ~~~~~t~L~~a~~~~~~~iv~~Ll~~g~-~~~~~~ 587 (978)
+..|.|||++|+..|+.+++++|+++|+ ++....
T Consensus 230 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~ 264 (273)
T 2pnn_A 230 NRKGLTPLALAASSGKIGVLAYILQREIHEPECRH 264 (273)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHHTC------
T ss_pred CCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhh
Confidence 5666666666666666666666666666 444333
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=7.5e-28 Score=252.88 Aligned_cols=215 Identities=25% Similarity=0.268 Sum_probs=163.1
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCC----cCCCCCCcHHHHHHhc---CCceeeeeccchHH
Q psy9384 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ----SGADVN----CSDMGGRTALRAAAWG---GHLEVTIVLGPLCV 468 (978)
Q Consensus 400 ~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~----~g~~~~----~~~~~~~t~l~~A~~~---~~~~i~~~~~~~~v 468 (978)
.++..+..|..|.||||+|+..|+.++|+.|++ .+++++ ..+..|.||||+|+.. |+.++
T Consensus 2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~--------- 72 (273)
T 2pnn_A 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT--------- 72 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHH---------
T ss_pred CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHH---------
Confidence 355567788999999999999999998888886 566665 3578899999999987 99999
Q ss_pred HHHHHHcCCCC-------cc----cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChH
Q psy9384 469 VKLLLAAGAHV-------NA----ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537 (978)
Q Consensus 469 v~~Ll~~g~~~-------~~----~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 537 (978)
+++|+++|++. +. .+..|.||||+|+..|+.+++++|+++|++++..+..+.. .
T Consensus 73 v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~----~----------- 137 (273)
T 2pnn_A 73 IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF----K----------- 137 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG----S-----------
T ss_pred HHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc----c-----------
Confidence 99999998653 22 4568999999999999999999999999999887763210 0
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh---CCCCccCCCCCCCcHHHHHHHcCC---------HHH
Q psy9384 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE---NEADQDHIDKSGRTPLWAAASMGH---------ASC 605 (978)
Q Consensus 538 ~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~---~g~~~~~~~~~~~t~L~~A~~~~~---------~~~ 605 (978)
..+....+..|.||||+|+..|+.+++++|++ +|++++..+..|.||||+|+..++ .++
T Consensus 138 ---------~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 208 (273)
T 2pnn_A 138 ---------KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208 (273)
T ss_dssp ---------SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred ---------cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence 01223345567778888888888888888888 777887777778888888887776 677
Q ss_pred HHHHHHCCCCCc-------ccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9384 606 VALLLFWGAYVD-------TIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647 (978)
Q Consensus 606 v~~Ll~~g~~~~-------~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~ 647 (978)
+++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|+
T Consensus 209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 778888777775 367778888888888888888888888776
No 53
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1e-28 Score=266.82 Aligned_cols=284 Identities=14% Similarity=0.086 Sum_probs=194.1
Q ss_pred HHHHHHH-cCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---cccCCCCCcHHHHHHHcCC
Q psy9384 560 PLLVAAF-EGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV---DTIDAEGRTVLSVAAAQGN 635 (978)
Q Consensus 560 ~L~~a~~-~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~~~ 635 (978)
+++++.. .++.++++++.++|.+.+ ||||.|+..|+.+++++|++.|+.. +..+..+.||||+|+..|+
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g~~~~-------T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~ 140 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKGIKSE-------VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 140 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHTCCHH-------HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCCcC-------CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC
Confidence 5555555 467788888888877653 8999999999999999999988732 2334457789999999999
Q ss_pred HHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCcHHHHHH-H
Q psy9384 636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ--VDNDGRAPLILAA-Q 712 (978)
Q Consensus 636 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~-~ 712 (978)
.+++++|+++|++... .+++..+ .||||+|+..|+.+++++|+++|++++. .|..|.||||+|+ .
T Consensus 141 ~eiv~~Ll~~gad~~~---------~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~ 208 (376)
T 2aja_A 141 LHVLNRLCELAPTEIM---------AMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 208 (376)
T ss_dssp HHHHHHHHHSCTTTHH---------HHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCCCCccc---------cccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHH
Confidence 9999999999832100 0122222 8999999999999999999999999887 7888999999999 9
Q ss_pred CCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHH
Q psy9384 713 DGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQE 792 (978)
Q Consensus 713 ~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~ 792 (978)
+|+.++|++|+++ |+ .|.|||+.|+ ..|+.+++++|+ ++| ++++..+ ++++.|+
T Consensus 209 ~G~~eiv~~Ll~~-ga-------~~~taL~~Aa-----~~g~~evv~lL~----~~g-----a~~~~~~----~~l~~A~ 262 (376)
T 2aja_A 209 RGHHNVINFLLDC-PV-------MLAYAEIHEF-----EYGEKYVNPFIA----RHV-----NRLKEMH----DAFKLSN 262 (376)
T ss_dssp TCCHHHHHHHTTS-HH-------HHHHHHHCTT-----TTTTTTHHHHHH----HHH-----HHHHHHH----TTTTTTS
T ss_pred CCCHHHHHHHHhC-CC-------ccchHHHHHH-----HCCCHHHHHHHH----hcC-----ccccccc----HHHHHHH
Confidence 9999999999985 53 3889999999 899999999999 888 7776654 3677777
Q ss_pred hhchHHHHH------------HHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccch
Q psy9384 793 YKKRLHILR------------KIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAV 860 (978)
Q Consensus 793 ~~g~~~i~~------------~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~ 860 (978)
..|+.++++ .++..+ ..+..+ .+++|++. + .
T Consensus 263 ~~g~~~vv~~~~~~~~~~~~~~li~~~--------------~~~~~~---~~~~Ll~~-~-------------------~ 305 (376)
T 2aja_A 263 PDGVFDLVTKSECLQGFYMLRNLIRRN--------------DEVLLD---DIRFLLSI-P-------------------G 305 (376)
T ss_dssp SSSCCCCSSHHHHHHHHHHHHHHHHHC--------------CGGGHH---HHHHHHTS-T-------------------T
T ss_pred HCCChhhhcHHhhhhhHHHHHHHHHcc--------------hhhHHH---HHHHHHhC-h-------------------h
Confidence 777666442 222211 112233 55555544 1 2
Q ss_pred hhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHH
Q psy9384 861 PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937 (978)
Q Consensus 861 v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~ 937 (978)
++.+...|++++ .+ .|||++|+..|+.++|++|++.| ..++..|.|++.+|..+|+.++++.-.+
T Consensus 306 vk~l~~~g~~~n-----~~----~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 306 IKALAPTATIPG-----DA----NELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp TGGGSSCCSSTT-----CC----CHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC---------------------
T ss_pred hhhhhccCCCCC-----Cc----cHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHH
Confidence 344555666654 33 68999999999999999999876 5567888999999999999998887544
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=3.8e-26 Score=221.17 Aligned_cols=169 Identities=28% Similarity=0.348 Sum_probs=152.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 343 NQSVLHKLCAENNINLLKTFLKSCEALD-LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
+.++||.|+..|+.+.++++++ .+.. ++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLR--KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHT--TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHH--cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence 3578999999999999999998 4544 788899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~ 501 (978)
|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..|.|||++|+..|+.++
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKC---------VEALLARGADLTTEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCccccCCCCCCHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccCCCCCCCh
Q psy9384 502 VSSILEYDADINQQDNDGRTA 522 (978)
Q Consensus 502 v~~Ll~~g~~~~~~~~~~~t~ 522 (978)
+++|+++|+++...+..+.||
T Consensus 151 ~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 151 QQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHhcccCCCCCC
Confidence 999999998887777666654
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=1.3e-26 Score=241.79 Aligned_cols=201 Identities=24% Similarity=0.290 Sum_probs=162.5
Q ss_pred CCCchHHHHHHHcCCHHH----HHHHHHhccCCCccccC----CCCCcHHHHHH---HhCCHHHHHHHHHCCCC------
Q psy9384 341 SKNQSVLHKLCAENNINL----LKTFLKSCEALDLELVD----KHGQTALNVAA---HQGFVDAVQILLEAGAN------ 403 (978)
Q Consensus 341 ~~~~~~l~~a~~~~~~~~----v~~ll~~~~~~~~~~~~----~~~~t~L~~A~---~~g~~~~v~~Ll~~g~~------ 403 (978)
..++++||.|+..|+.+. ++++++ .+.+++..+ ..|.||||+|+ ..|+.++|++|++.|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLT--HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 467899999999999995 555555 566666555 77999999999 77999999999998743
Q ss_pred -----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC--------------CCCCcHHHHHHhcCCceeeeecc
Q psy9384 404 -----INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD--------------MGGRTALRAAAWGGHLEVTIVLG 464 (978)
Q Consensus 404 -----~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~--------------~~~~t~l~~A~~~~~~~i~~~~~ 464 (978)
++..|..|+||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.++
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~----- 155 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI----- 155 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH-----
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH-----
Confidence 45556689999999999999999999999999999988 589999999999999999
Q ss_pred chHHHHHHHH---cCCCCcccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCccCCCCCCChhhhhhhccCC
Q psy9384 465 PLCVVKLLLA---AGAHVNAADSEGRTALIASAYMGH---------ADIVSSILEYDADINQQDNDGRTALSVSALCVPS 532 (978)
Q Consensus 465 ~~~vv~~Ll~---~g~~~~~~~~~~~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~ 532 (978)
+++|++ +|++++.++..|.||||+|+..++ .+++++|+++|++++....
T Consensus 156 ----v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~--------------- 216 (260)
T 3jxi_A 156 ----VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN--------------- 216 (260)
T ss_dssp ----HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC---------------
T ss_pred ----HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc---------------
Confidence 999999 999999999999999999998877 5777777777766532100
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc
Q psy9384 533 SDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583 (978)
Q Consensus 533 ~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~ 583 (978)
..+..+..|.||||+|+..|+.+++++|+++|.+.
T Consensus 217 ----------------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 217 ----------------LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp ----------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 01335556666777777777777777777666543
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=7.3e-26 Score=223.61 Aligned_cols=162 Identities=31% Similarity=0.364 Sum_probs=123.7
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy9384 337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416 (978)
Q Consensus 337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~ 416 (978)
+..|..|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHH--HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHH--hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 4456677777777777777777777777 56677777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q psy9384 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496 (978)
Q Consensus 417 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 496 (978)
+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..|.||+++|+..
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 177 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEI---------VKKLLELGADISARDLTGLTAEASARIF 177 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence 7777777777777777777777777777777777777777777 7777777777777777777777777777
Q ss_pred CCHHHHHHHHHcC
Q psy9384 497 GHADIVSSILEYD 509 (978)
Q Consensus 497 ~~~~~v~~Ll~~g 509 (978)
|+.+++++|+++|
T Consensus 178 ~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 178 GRQEVIKIFTEVR 190 (192)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CcHHHHHHHHhcc
Confidence 7777777777653
No 57
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=2.9e-25 Score=213.97 Aligned_cols=158 Identities=37% Similarity=0.539 Sum_probs=139.0
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384 341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW 420 (978)
Q Consensus 341 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 420 (978)
..+.+++++|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 345678999999999999999998 788888888889999999999999999999999998888888889999999999
Q ss_pred cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500 (978)
Q Consensus 421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~ 500 (978)
.|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..|.|||++|+..|+.+
T Consensus 90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 160 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI---------VEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence 999999999999999888888888999999999998888 99999999998888888999999999999999
Q ss_pred HHHHHHHcC
Q psy9384 501 IVSSILEYD 509 (978)
Q Consensus 501 ~v~~Ll~~g 509 (978)
++++|++.|
T Consensus 161 ~~~~L~~~G 169 (169)
T 2y1l_E 161 LAEILQKLN 169 (169)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHcC
Confidence 999988765
No 58
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=5e-26 Score=237.26 Aligned_cols=205 Identities=20% Similarity=0.189 Sum_probs=168.5
Q ss_pred CCCCCHHHHHHHcCCHHH----HHHHHhCCCCccCCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCC--------
Q psy9384 555 REGMTPLLVAAFEGHRDV----CEILLENEADQDHID----KSGRTPLWAAA---SMGHASCVALLLFWGAY-------- 615 (978)
Q Consensus 555 ~~~~t~L~~a~~~~~~~i----v~~Ll~~g~~~~~~~----~~~~t~L~~A~---~~~~~~~v~~Ll~~g~~-------- 615 (978)
..+.++|+.|++.|+.+. +++|++.|++++..+ ..|.||||+|+ ..|+.+++++|++.|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 456789999999999984 555555888888665 66999999998 67999999999988743
Q ss_pred ---CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHh-
Q psy9384 616 ---VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE- 691 (978)
Q Consensus 616 ---~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~- 691 (978)
.+..+..|.||||+|+..|+.+++++|+++|++++...........+.+..+..|.||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3444558999999999999999999999999433222111111111111222689999999999999999999999
Q ss_pred --CCCCCCCCCCCCCcHHHHHHHCCC---------HHHHHHHHhhcCCCC-------cCCCCCCCcHHHHHHhcccchhH
Q psy9384 692 --AGAKVDQVDNDGRAPLILAAQDGH---------YHLVEMFLEQYEANV-------NQKSHDGRTALRVNMKNVTKLSF 753 (978)
Q Consensus 692 --~g~~~~~~d~~g~t~L~~A~~~~~---------~~iv~~Ll~~~~~~~-------~~~~~~g~t~L~~a~~~~~~~~~ 753 (978)
+|++++..|..|.||||+|+..++ .+++++|+++ |+++ +.+|..|.||||+|+ ..+
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~-----~~g 236 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAA-----KTG 236 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHH-----HTT
T ss_pred cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHH-----HcC
Confidence 999999999999999999998887 7999999997 9998 679999999999999 999
Q ss_pred HHHHHHHHHHHHHhcC
Q psy9384 754 WYLLIQPLLNIILSSL 769 (978)
Q Consensus 754 ~~~~~~~Ll~~~~~~~ 769 (978)
+.+++++|+ ++|
T Consensus 237 ~~~~v~~Ll----~~g 248 (260)
T 3jxi_A 237 KIGIFQHII----RRE 248 (260)
T ss_dssp CHHHHHHHH----HHH
T ss_pred CHHHHHHHH----HhC
Confidence 999999999 887
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=1.6e-25 Score=214.54 Aligned_cols=158 Identities=28% Similarity=0.370 Sum_probs=135.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
...++|+.|+..|+.+++++|++ .+.+++..+..|.||||+|+. |+.+++++|++.|++++..+..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh--CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 34578888888888888888888 778888888888888888888 888888888888888888888888888888888
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcCCHH
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRTALIASAYMGHAD 500 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~-~~~~~~~~~t~L~~A~~~~~~~ 500 (978)
|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++ ++..+..|.|||++|+..|+.+
T Consensus 81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~ 151 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV---------VEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151 (162)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH---------HHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 88888888888888888888888888888888888888 8888888887 5788888888888888888888
Q ss_pred HHHHHHHcCCC
Q psy9384 501 IVSSILEYDAD 511 (978)
Q Consensus 501 ~v~~Ll~~g~~ 511 (978)
++++|+++|++
T Consensus 152 ~~~~Ll~~GAd 162 (162)
T 1ihb_A 152 VVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhCCC
Confidence 88888888864
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=1.6e-25 Score=215.54 Aligned_cols=160 Identities=28% Similarity=0.351 Sum_probs=146.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
.|.||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 46789999999999999999998 6788888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~ 501 (978)
|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..|.||+++|+..|+.++
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 150 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC---------VKMLLESGADPTIETDSGYNSMDLAVALGYRSV 150 (167)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 99999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHcCCCC
Q psy9384 502 VSSILEYDADI 512 (978)
Q Consensus 502 v~~Ll~~g~~~ 512 (978)
+++|++++.++
T Consensus 151 ~~~L~~~~~~~ 161 (167)
T 3v31_A 151 QQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999876543
No 61
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=4e-26 Score=238.93 Aligned_cols=188 Identities=28% Similarity=0.404 Sum_probs=120.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHH----
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA-NINHTDCEGWTPLRSAS---- 419 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~---- 419 (978)
+++|.|+..|+++.++.+++......++..|..|.||||+||..|+.++|++|++.|+ +++..+..|.||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 3456666667777776666532233356666777777777777777777777777776 66667777777777776
Q ss_pred -HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy9384 420 -WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498 (978)
Q Consensus 420 -~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~ 498 (978)
..++.+++++|++.|.+.+..+..|.||||+|+..|+.++ +++|+++|++++..+..|.||||+|+..|+
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~---------v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDV---------VKALLACEADVNVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH---------HHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 4466666777776666666666666666666666666666 666666666666666666666666666666
Q ss_pred HHHHHHHHH-cCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhC
Q psy9384 499 ADIVSSILE-YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546 (978)
Q Consensus 499 ~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~ 546 (978)
.+++++|++ .|++++.++..|.|||++|+ ..++.+++++|+++
T Consensus 229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~-----~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 229 KEIAGLLLAVPSCDISLTDRDGSTALMVAL-----DAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHHHHHTSTTCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCcCCCCCCHHHHHH-----HcCCHHHHHHHHhc
Confidence 666666666 56665555555555555555 34445555555443
No 62
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=3.9e-25 Score=214.04 Aligned_cols=169 Identities=28% Similarity=0.345 Sum_probs=150.9
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCC-ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCC
Q psy9384 557 GMTPLLVAAFEGHRDVCEILLENEAD-QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635 (978)
Q Consensus 557 ~~t~L~~a~~~~~~~iv~~Ll~~g~~-~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~ 635 (978)
+.+||+.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 35799999999999999999999887 78888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q psy9384 636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715 (978)
Q Consensus 636 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~ 715 (978)
.+++++|+++| .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+
T Consensus 82 ~~~v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 147 (172)
T 3v30_A 82 TDIVGLLLERD--------------VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY 147 (172)
T ss_dssp HHHHHHHHTTT--------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHHcC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc
Confidence 99999999999 7888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcCCCCCCCcH
Q psy9384 716 YHLVEMFLEQYEANVNQKSHDGRTA 740 (978)
Q Consensus 716 ~~iv~~Ll~~~~~~~~~~~~~g~t~ 740 (978)
.+++++|+++ ++++...+..|.||
T Consensus 148 ~~~~~~L~~~-~~~~~~~~~~~~~p 171 (172)
T 3v30_A 148 RKVQQVIENH-ILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHHH-HHHHSCC-------
T ss_pred HHHHHHHHHH-HHHHhcccCCCCCC
Confidence 9999999997 88888888777776
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=8e-25 Score=210.87 Aligned_cols=159 Identities=44% Similarity=0.656 Sum_probs=138.5
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc
Q psy9384 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454 (978)
Q Consensus 375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 454 (978)
...+.++|+.||..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCC
Q psy9384 455 GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534 (978)
Q Consensus 455 ~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~ 534 (978)
|+.++ +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+ ..
T Consensus 91 ~~~~~---------~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~-----~~ 156 (169)
T 2y1l_E 91 GHLEI---------VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI-----DN 156 (169)
T ss_dssp TCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HT
T ss_pred CCHHH---------HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-----Hh
Confidence 99888 99999999999988989999999999999999999999988888877777777777777 56
Q ss_pred ChHHHHHHHHhCC
Q psy9384 535 GYAKVVSILLEKG 547 (978)
Q Consensus 535 ~~~~~v~~Ll~~g 547 (978)
++.+++++|++.|
T Consensus 157 ~~~~~~~~L~~~G 169 (169)
T 2y1l_E 157 GNEDLAEILQKLN 169 (169)
T ss_dssp TCHHHHHHHHTC-
T ss_pred CCHHHHHHHHHcC
Confidence 6777777777654
No 64
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=233.68 Aligned_cols=188 Identities=23% Similarity=0.325 Sum_probs=143.3
Q ss_pred ChhhhhhhccCCCCChHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CccCCCCCCCcHHHHH
Q psy9384 521 TALSVSALCVPSSDGYAKVVSILLEKGAK--VDHEDREGMTPLLVAAFEGHRDVCEILLENEA-DQDHIDKSGRTPLWAA 597 (978)
Q Consensus 521 t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~-~~~~~~~~~~t~L~~A 597 (978)
++++.++ ..++.+.++.+++.+.+ +|..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.|||+.|
T Consensus 78 ~~l~~a~-----~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 78 SDAHPEL-----VRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp TTCCHHH-----HHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred cCCCHHH-----HHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence 4455555 34566666666655544 66677778888888888888888888888877 7777777788888887
Q ss_pred H-----HcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCch
Q psy9384 598 A-----SMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672 (978)
Q Consensus 598 ~-----~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 672 (978)
+ ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++| .+++.+|..|+|
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g--------------ad~n~~d~~G~T 218 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE--------------ADVNVQDDDGST 218 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--------------CCTTCCCTTSCC
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCC--------------CCCCCCCCCCCC
Confidence 7 557777888888888777777777888888888888888888888887 677777778888
Q ss_pred HHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcC
Q psy9384 673 PLHYAAIEGHEEVCRALLE-AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYE 727 (978)
Q Consensus 673 ~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~ 727 (978)
|||+|+..|+.+++++|++ .|++++..|..|.|||++|+..|+.+++++|+++.+
T Consensus 219 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 219 ALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 8888888888888888887 688888888888888888888888888888887643
No 65
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=3.1e-25 Score=216.12 Aligned_cols=164 Identities=26% Similarity=0.317 Sum_probs=110.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG 422 (978)
Q Consensus 343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g 422 (978)
+.++|+.|+..|+.+++++|++. .+.+++..+..|.||||+||..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 44566777777777777776663 24556666666677777777777777777777777666666666667777777777
Q ss_pred CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q psy9384 423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502 (978)
Q Consensus 423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v 502 (978)
+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..|.||+++|+..++.+++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~ 154 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV---------AEDLVANGALVSICNKYGEMPVDKAKAPLRELLR 154 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH---------HHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHH
Confidence 7777777777776666666666667777766666666 6666666666666666666666666666666666
Q ss_pred HHHHHcCCCCccCC
Q psy9384 503 SSILEYDADINQQD 516 (978)
Q Consensus 503 ~~Ll~~g~~~~~~~ 516 (978)
++|+++|++++..+
T Consensus 155 ~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 155 ERAEKMGQNLNRIP 168 (179)
T ss_dssp HHHHHTTCCCSCBC
T ss_pred HHHHHhhcCcccCC
Confidence 66666666665544
No 66
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=8.8e-25 Score=215.82 Aligned_cols=161 Identities=29% Similarity=0.335 Sum_probs=150.0
Q ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHH
Q psy9384 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630 (978)
Q Consensus 551 ~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A 630 (978)
+.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 55778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy9384 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710 (978)
Q Consensus 631 ~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 710 (978)
+..++.+++++|+++| .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||+++|
T Consensus 109 ~~~~~~~~v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 174 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHG--------------ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174 (192)
T ss_dssp HHHTCHHHHHHHHHTT--------------CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred HHcCCHHHHHHHHHCC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 9999999999999998 78888899999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHhh
Q psy9384 711 AQDGHYHLVEMFLEQ 725 (978)
Q Consensus 711 ~~~~~~~iv~~Ll~~ 725 (978)
+..|+.+++++|++.
T Consensus 175 ~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 175 RIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHhc
Confidence 999999999999886
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=4e-25 Score=211.73 Aligned_cols=157 Identities=29% Similarity=0.403 Sum_probs=133.4
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~ 456 (978)
...||||.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 45689999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CccCCCCCCChhhhhhhccCCCCC
Q psy9384 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD-INQQDNDGRTALSVSALCVPSSDG 535 (978)
Q Consensus 457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~l~~a~~~~~~~~~ 535 (978)
.++ +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||+++|+ ..+
T Consensus 83 ~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~-----~~~ 148 (162)
T 1ihb_A 83 LDT---------LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR-----LYG 148 (162)
T ss_dssp HHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH-----HTT
T ss_pred HHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH-----HcC
Confidence 888 9999999999999999999999999999999999999998887 4666666666666666 455
Q ss_pred hHHHHHHHHhCCC
Q psy9384 536 YAKVVSILLEKGA 548 (978)
Q Consensus 536 ~~~~v~~Ll~~g~ 548 (978)
+.+++++|+++|+
T Consensus 149 ~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 149 RNEVVSLMQANGA 161 (162)
T ss_dssp CHHHHHHHHHTC-
T ss_pred CHHHHHHHHHhCC
Confidence 6666666666654
No 68
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=1.6e-27 Score=257.40 Aligned_cols=278 Identities=13% Similarity=0.070 Sum_probs=172.5
Q ss_pred cHHHHHHH-cCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCC---CCCC
Q psy9384 625 TVLSVAAA-QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV---DQVD 700 (978)
Q Consensus 625 t~L~~A~~-~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d 700 (978)
++++++.. .++.+++++++++| .+ +.||||+|+..|+.+++++|+++|+.. +..+
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g--------------~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~ 125 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKG--------------IK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 125 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHT--------------CC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C
T ss_pred HHHHHHHhcCCCHHHHHHHHHcC--------------CC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhc
Confidence 34555554 46677777877766 22 348888888888888888888887622 1233
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHhhcCCCC---cCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCccccc
Q psy9384 701 NDGRAPLILAAQDGHYHLVEMFLEQYEANV---NQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDL 777 (978)
Q Consensus 701 ~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~---~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 777 (978)
..|.||||+|+.+|+.++|++|+++ |+++ +..+.+ .||||+|+ ..|+.+++++|+ ++| +++
T Consensus 126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~-~TpLh~Aa-----~~G~~eiv~~Ll----~~g-----a~~ 189 (376)
T 2aja_A 126 AENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN-YHAFRLAA-----ENGHLHVLNRLC----ELA-----PTE 189 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH-HHHHHHHH-----HTTCHHHHHHHH----HSC-----GGG
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC-CCHHHHHH-----HCCCHHHHHHHH----HcC-----Ccc
Confidence 4567788888888888888888886 7542 222222 78888888 788888888888 888 777
Q ss_pred cc--ccCCCCccchHHH-hhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCccccccccccccc
Q psy9384 778 FT--KFSTTNPHISRQE-YKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQT 854 (978)
Q Consensus 778 ~~--~~~~g~t~l~~a~-~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl 854 (978)
+. .+..|.|||+.|+ ..|+.+++++|++.+ ..|.|||+ .|+..|+.+ ++++|+++ |++++..+ +++
T Consensus 190 ~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a~~~taL~--~Aa~~g~~e---vv~lL~~~-ga~~~~~~----~~l 258 (376)
T 2aja_A 190 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-VMLAYAEI--HEFEYGEKY---VNPFIARH-VNRLKEMH----DAF 258 (376)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-HHHHHHHH--CTTTTTTTT---HHHHHHHH-HHHHHHHH----TTT
T ss_pred chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-CccchHHH--HHHHCCCHH---HHHHHHhc-Cccccccc----HHH
Confidence 66 7777888888888 888888888888865 45888888 888888888 88888888 88776654 345
Q ss_pred ccccc-----hhhhhhhccCCchhhhhhhCCCCCCch---HHHHHHhCCHHHHHHHHH---------cCCCCCCCcccCc
Q psy9384 855 SSSSA-----VPSATDEHFSRDTHMRIILGSSKVGEK---ISIAAQEGHEDCVRLLLH---------YGADPKHSDHCGR 917 (978)
Q Consensus 855 ~~a~~-----~v~~L~~~g~~~~~~~~~~g~~~~~t~---L~~A~~~g~~~iv~~Ll~---------~ga~~~~~d~~g~ 917 (978)
+.|+. +++.... ..+ ... |..+...+..+.+++|++ .|++++. +.
T Consensus 259 ~~A~~~g~~~vv~~~~~----------~~~----~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~----~~ 320 (376)
T 2aja_A 259 KLSNPDGVFDLVTKSEC----------LQG----FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD----AN 320 (376)
T ss_dssp TTTSSSSCCCCSSHHHH----------HHH----HHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC----CC
T ss_pred HHHHHCCChhhhcHHhh----------hhh----HHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCC----cc
Confidence 55443 1110000 000 000 111112234667777776 4555553 45
Q ss_pred cHHHHHHHcChHHHHHHHHHcCCCCcccccchhhhhhhhcChhHHHHHHHhh
Q psy9384 918 NAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQY 969 (978)
Q Consensus 918 t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~l~~A~~~~~~~~~~~L~~~ 969 (978)
|||++|+..|+.++|++|++.| .+....+.|++..|-.+|+.++.+.-..+
T Consensus 321 ~~L~~A~~~g~~e~v~lLl~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 321 ELLRLALRLGNQGACALLLSIP-SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp HHHHHHHHHTCTTHHHHHTTSH-HHHHSCC----------------------
T ss_pred HHHHHHHHcCcHHHHHHHHcCh-HHHHHHHHhccccccccccccHHHHHHHH
Confidence 8999999999999999999876 33445688999999999999998876654
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=1.5e-24 Score=205.10 Aligned_cols=150 Identities=30% Similarity=0.382 Sum_probs=137.2
Q ss_pred chHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy9384 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH 423 (978)
Q Consensus 344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~ 423 (978)
.++|+.|+..|+.+++++|++ .+.+.+ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHH--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 478999999999999999999 566655 57889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy9384 424 SAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503 (978)
Q Consensus 424 ~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~ 503 (978)
.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++.++..|.|||++|+..|+.++++
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~ 150 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV---------VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999998 99999999999999999999999999999999998
Q ss_pred HH
Q psy9384 504 SI 505 (978)
Q Consensus 504 ~L 505 (978)
+|
T Consensus 151 ~L 152 (153)
T 1awc_B 151 IL 152 (153)
T ss_dssp HH
T ss_pred Hh
Confidence 87
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=4.2e-25 Score=212.17 Aligned_cols=157 Identities=33% Similarity=0.390 Sum_probs=83.2
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc
Q psy9384 376 KHGQTALNVAAHQGFVDAVQILLE-AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454 (978)
Q Consensus 376 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 454 (978)
..+.||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 334455555555555555555554 2334444444555555555555555555555555555555555555555555555
Q ss_pred CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCC
Q psy9384 455 GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534 (978)
Q Consensus 455 ~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~ 534 (978)
|+.++ +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|. .
T Consensus 86 ~~~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~-----~- 150 (165)
T 3twr_A 86 GHYEV---------AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-----D- 150 (165)
T ss_dssp TCHHH---------HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC-----T-
T ss_pred CcHHH---------HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh-----c-
Confidence 55555 55555555555555555555555555555555555555555555555555555555543 2
Q ss_pred ChHHHHHHHHhCC
Q psy9384 535 GYAKVVSILLEKG 547 (978)
Q Consensus 535 ~~~~~v~~Ll~~g 547 (978)
++.+++++|++.|
T Consensus 151 ~~~~i~~~L~~~g 163 (165)
T 3twr_A 151 GDTDIQDLLRGDA 163 (165)
T ss_dssp TCHHHHHHHHTC-
T ss_pred CChHHHHHHhhcc
Confidence 4445555555554
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=1.8e-24 Score=210.68 Aligned_cols=166 Identities=23% Similarity=0.333 Sum_probs=155.2
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 455 (978)
.+.++||.||..|+.++|++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 467899999999999999999998 6779999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC
Q psy9384 456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG 535 (978)
Q Consensus 456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~ 535 (978)
+.++ +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+ ..+
T Consensus 84 ~~~~---------v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~-----~~~ 149 (179)
T 3f6q_A 84 HRDI---------VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK-----APL 149 (179)
T ss_dssp CHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC-----HHH
T ss_pred CHHH---------HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH-----HHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999998 678
Q ss_pred hHHHHHHHHhCCCCCCCCCCC
Q psy9384 536 YAKVVSILLEKGAKVDHEDRE 556 (978)
Q Consensus 536 ~~~~v~~Ll~~g~~~~~~~~~ 556 (978)
+.+++++|++.|++++..+..
T Consensus 150 ~~~~~~~L~~~g~~~~~~~~~ 170 (179)
T 3f6q_A 150 RELLRERAEKMGQNLNRIPYK 170 (179)
T ss_dssp HHHHHHHHHHTTCCCSCBCCC
T ss_pred HHHHHHHHHHhhcCcccCCcc
Confidence 899999999999998876543
No 72
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=3e-24 Score=206.60 Aligned_cols=156 Identities=29% Similarity=0.348 Sum_probs=122.1
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCC
Q psy9384 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635 (978)
Q Consensus 556 ~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~ 635 (978)
.|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 35677888888888888888777777777777777788888888788888888887777777777777788888887778
Q ss_pred HHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q psy9384 636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715 (978)
Q Consensus 636 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~ 715 (978)
.+++++|+++| .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+
T Consensus 82 ~~~v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 147 (167)
T 3v31_A 82 TDIVKMLLDCG--------------VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147 (167)
T ss_dssp HHHHHHHHHHT--------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHHCC--------------CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence 88888887777 6667777777788888877778888888887777777777777788888887777
Q ss_pred HHHHHHHHhh
Q psy9384 716 YHLVEMFLEQ 725 (978)
Q Consensus 716 ~~iv~~Ll~~ 725 (978)
.+++++|+++
T Consensus 148 ~~~~~~L~~~ 157 (167)
T 3v31_A 148 RSVQQVIESH 157 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777775
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.5e-26 Score=234.03 Aligned_cols=186 Identities=16% Similarity=0.027 Sum_probs=148.0
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHH
Q psy9384 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVN 744 (978)
Q Consensus 665 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a 744 (978)
..+..+.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A 94 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCA 94 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHH
Confidence 4455677899999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred HhcccchhHHHHHHHHHHHHHHhcCCCCccccccccc-CCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhh
Q psy9384 745 MKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKF-STTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWL 823 (978)
Q Consensus 745 ~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~ 823 (978)
+ ..++.+++++|+ ++| ++++..+ ..|.|||+.| .++..
T Consensus 95 ~-----~~g~~~~v~~Ll----~~g-----a~~~~~~~~~g~tpL~~A---------------------------~a~~~ 133 (229)
T 2vge_A 95 A-----SCNDTVICMALV----QHG-----AAIFATTLSDGATAFEKC---------------------------DPYRE 133 (229)
T ss_dssp H-----HTTCHHHHHHHH----TTT-----CCTTCCCSSTTCCTGGGC---------------------------CTTST
T ss_pred H-----HcCCHHHHHHHH----HcC-----CCcccccCCCCCCHHHHH---------------------------HHHhc
Confidence 9 899999999999 999 8888875 3555554444 11566
Q ss_pred cccccccchhhhcccCCCcccccccccccccccccc--hhhhhhhccCC--chhhhhhhCCCCCCchHHHHHHhCCHHHH
Q psy9384 824 LDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA--VPSATDEHFSR--DTHMRIILGSSKVGEKISIAAQEGHEDCV 899 (978)
Q Consensus 824 g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~--~v~~L~~~g~~--~~~~~~~~g~~~~~t~L~~A~~~g~~~iv 899 (978)
|+.+ ++++|++. |++++..+..+.||++.++. ..++|++.|++ ++.++ ..| .||||+|+..|+.++|
T Consensus 134 ~~~~---~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d-~~G----~TpL~~A~~~g~~~~v 204 (229)
T 2vge_A 134 GYAD---CATYLADV-EQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRD-GPE----ETDWWWAALHGQEGYV 204 (229)
T ss_dssp THHH---HHHHHHHH-HHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESS-CTT----CSSEEEEEETTEEEEE
T ss_pred ChHH---HHHHHHHc-CCCcccccCCchHHHHHHhhccccccCccccccccccccC-CCc----ccHHHHHHHcCCccee
Confidence 6666 66666666 77777777777777764444 55666666666 44555 556 7777777777777776
Q ss_pred HH
Q psy9384 900 RL 901 (978)
Q Consensus 900 ~~ 901 (978)
+.
T Consensus 205 ~~ 206 (229)
T 2vge_A 205 PR 206 (229)
T ss_dssp EG
T ss_pred eh
Confidence 64
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=2.2e-24 Score=207.07 Aligned_cols=161 Identities=29% Similarity=0.367 Sum_probs=149.6
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy9384 339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSA 418 (978)
Q Consensus 339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A 418 (978)
.+..+.++|+.|+..|+.+++++|++. .+.+.+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 456778999999999999999999985 4567777888899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy9384 419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498 (978)
Q Consensus 419 ~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~ 498 (978)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++.++..|.||+++|+. ++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~ 152 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI---------CKLLLQHGADPTKKNRDGNTPLDLVKD-GD 152 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCTGGGSCT-TC
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCcccCCCCCChhHhHhc-CC
Confidence 99999999999999999999999999999999999999999 999999999999999999999999877 99
Q ss_pred HHHHHHHHHcCC
Q psy9384 499 ADIVSSILEYDA 510 (978)
Q Consensus 499 ~~~v~~Ll~~g~ 510 (978)
.+++++|+++|+
T Consensus 153 ~~i~~~L~~~gA 164 (165)
T 3twr_A 153 TDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHHTC--
T ss_pred hHHHHHHhhccc
Confidence 999999999875
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=3.2e-24 Score=203.88 Aligned_cols=154 Identities=28% Similarity=0.387 Sum_probs=142.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG 422 (978)
Q Consensus 343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g 422 (978)
+.++|+.|+..|+.+.+++|++. .+.+++..+..|.||||+ |..|+.+++++|++.|++++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 35889999999999999999985 456888899999999999 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q psy9384 423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502 (978)
Q Consensus 423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v 502 (978)
+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|++. ++++..+..|.|||++|+..|+.+++
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v 149 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV---------VSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV 149 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHH---------HHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHH---------HHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence 9999999999999999999999999999999999998 9999998 99999999999999999999999999
Q ss_pred HHHHHc
Q psy9384 503 SSILEY 508 (978)
Q Consensus 503 ~~Ll~~ 508 (978)
++|+++
T Consensus 150 ~~Ll~~ 155 (156)
T 1bd8_A 150 DILQGH 155 (156)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999874
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=1.2e-23 Score=198.95 Aligned_cols=149 Identities=33% Similarity=0.432 Sum_probs=94.4
Q ss_pred CHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638 (978)
Q Consensus 559 t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~i 638 (978)
++|+.|+..|+.+++++|+++|++++ .+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 82 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI 82 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence 46666666666666666666666554 35556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHH
Q psy9384 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHL 718 (978)
Q Consensus 639 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~i 718 (978)
+++|+++| .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+.+|+.++
T Consensus 83 v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i 148 (153)
T 1awc_B 83 VEVLLKHG--------------ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148 (153)
T ss_dssp HHHHHTTT--------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 66666666 4555566666666666666666666666666666666666666666666666666666
Q ss_pred HHHH
Q psy9384 719 VEMF 722 (978)
Q Consensus 719 v~~L 722 (978)
+++|
T Consensus 149 ~~~L 152 (153)
T 1awc_B 149 AEIL 152 (153)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 77
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=8.4e-25 Score=221.21 Aligned_cols=155 Identities=21% Similarity=0.157 Sum_probs=122.0
Q ss_pred HHHHHHCCCCCcccCC---CCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCC
Q psy9384 606 VALLLFWGAYVDTIDA---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682 (978)
Q Consensus 606 v~~Ll~~g~~~~~~~~---~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 682 (978)
++.|+++|++++..+. ++.||||.|+..|+.+++++|++.| .+++.++..|.||||+|+..|+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--------------~~~~~~d~~g~tpLh~A~~~g~ 66 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM--------------NDPSQPNEEGITALHNAICGAN 66 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--------------SCTTCCCTTSCCHHHHHHHTTC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC--------------CCCCCCCCCCCCHHHHHHHcCC
Confidence 3566777777654433 4556788899999999999999888 6777888889999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCC-CCCCcHHHHH--HhcccchhHHHHHHH
Q psy9384 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS-HDGRTALRVN--MKNVTKLSFWYLLIQ 759 (978)
Q Consensus 683 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~-~~g~t~L~~a--~~~~~~~~~~~~~~~ 759 (978)
.+++++|+++|++++..|..|.||||+|+..|+.+++++|++. |++++..+ ..|.|||++| + ..++.++++
T Consensus 67 ~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~-----~~~~~~~v~ 140 (229)
T 2vge_A 67 YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPY-----REGYADCAT 140 (229)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTT-----STTHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHH-----hcChHHHHH
Confidence 9999999999999998888899999999999999999999987 89988886 5899999998 7 888899999
Q ss_pred HHHHHHHhcCCCCcccccccccCCCCccch
Q psy9384 760 PLLNIILSSLFPLTVEDLFTKFSTTNPHIS 789 (978)
Q Consensus 760 ~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~ 789 (978)
+|+ +.| ++++..+..|.++++
T Consensus 141 ~Ll----~~g-----a~~~~~~~~~~~~l~ 161 (229)
T 2vge_A 141 YLA----DVE-----QSMGLMNSGAVYALW 161 (229)
T ss_dssp HHH----HHH-----HHTTTSGGGEEEESS
T ss_pred HHH----HcC-----CCcccccCCchHHHH
Confidence 999 888 888877655555544
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.90 E-value=1.5e-24 Score=221.98 Aligned_cols=214 Identities=18% Similarity=0.094 Sum_probs=145.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccC
Q psy9384 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRD 667 (978)
Q Consensus 588 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 667 (978)
..|.|||+.|+..++.+.++.|+++|++++.. ..+.||||.|+..|+.+++++|++.| .+++.++
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g--------------~~~~~~d 67 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEV--------------DDPSLPN 67 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTT--------------SSCCCCC
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcC--------------CCCCCcC
Confidence 35778888888888888888888888888753 66788999999999999999999888 6788888
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCC-cHHHHH--
Q psy9384 668 NCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGR-TALRVN-- 744 (978)
Q Consensus 668 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~-t~L~~a-- 744 (978)
..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++ |++++..+..|. ||||+|
T Consensus 68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~ 146 (239)
T 1ycs_B 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEE 146 (239)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCS
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999987 999998887777 999988
Q ss_pred HhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhc
Q psy9384 745 MKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLL 824 (978)
Q Consensus 745 ~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g 824 (978)
+ ..++.+++++|+ +.| ++++..+..+.++++ +..+.++++ ++...|
T Consensus 147 ~-----~~g~~~~~~~Ll----~~~-----a~~~~~~~~~~~al~------------------d~~~~~~~e--La~~~G 192 (239)
T 1ycs_B 147 M-----EEGYTQCSQFLY----GVQ-----EKMGIMNKGVIYALW------------------DYEPQNDDE--LPMKEG 192 (239)
T ss_dssp S-----STTCCCHHHHHH----HHH-----HHTTTTGGGEEEESS------------------CBCCSSTTB--CCBCSS
T ss_pred h-----hhccHHHHHHHH----Hhh-----hcccccccceEEEEe------------------ccCCCCCCc--ccccCC
Confidence 5 778889999999 888 777766554444432 456777888 777777
Q ss_pred ccccccchhhhcccCCCc------ccccccccccccccc
Q psy9384 825 DVKHCTKRYLCSLNDGHL------IHAVDLSQRRQTSSS 857 (978)
Q Consensus 825 ~~~~~~~v~~Ll~~~g~~------~~~~~~~~~tpl~~a 857 (978)
. +++.|... +.+ ....+..|.+|..+.
T Consensus 193 ~-----~i~vl~~~-~~~~~~Ww~~~~~~~~G~~P~~yv 225 (239)
T 1ycs_B 193 D-----CMTIIHRE-DEDEIEWWWARLNDKEGYVPRNLL 225 (239)
T ss_dssp C-----EEEECCCC-TTSCSSEEEEEETTEEEEEEGGGE
T ss_pred C-----EEEEEEec-CCCCCCEEEEEECCcEEEeehHHe
Confidence 5 55666655 443 234566788888764
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.90 E-value=5e-23 Score=195.55 Aligned_cols=152 Identities=29% Similarity=0.373 Sum_probs=133.5
Q ss_pred CCHHHHHHHcCCHHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCH
Q psy9384 558 MTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636 (978)
Q Consensus 558 ~t~L~~a~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~ 636 (978)
.++|+.|+..|+.+++++|++. +.+++..+..|.||||. +..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 4788999999999999998888 34788888888999998 888899999999999998888888899999999999999
Q ss_pred HHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH
Q psy9384 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716 (978)
Q Consensus 637 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~ 716 (978)
+++++|+++| .+++.++..|.||||+|+..|+.+++++|+++ ++++..|..|.|||++|+..|+.
T Consensus 82 ~~v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~ 146 (156)
T 1bd8_A 82 DTLKVLVEHG--------------ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ 146 (156)
T ss_dssp HHHHHHHHTT--------------CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCH
T ss_pred HHHHHHHHcC--------------CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcH
Confidence 9999999988 67788888889999999999999999999988 88888888899999999999999
Q ss_pred HHHHHHHhh
Q psy9384 717 HLVEMFLEQ 725 (978)
Q Consensus 717 ~iv~~Ll~~ 725 (978)
+++++|+++
T Consensus 147 ~~v~~Ll~~ 155 (156)
T 1bd8_A 147 DLVDILQGH 155 (156)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999988874
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.90 E-value=3.3e-24 Score=219.47 Aligned_cols=175 Identities=22% Similarity=0.202 Sum_probs=122.8
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384 341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW 420 (978)
Q Consensus 341 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~ 420 (978)
..|.||||.|+..++.+.++.|++ .|.+++.. ..+.||||.|+..|+.++|++|++.|++++..|..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~--~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA--HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhc--cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 467899999999999999999998 77777753 677899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCC-cHHHHH--HHcC
Q psy9384 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGR-TALIAS--AYMG 497 (978)
Q Consensus 421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~-t~L~~A--~~~~ 497 (978)
.|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..+. ||++.| +..|
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV---------CKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCcceecCCCCcchHHHHHHhhhc
Confidence 999999999999999999999999999999999999988 9999999999998887777 999998 7788
Q ss_pred CHHHHHHHHHcCCCCccC---------CCCCCChhhhhh
Q psy9384 498 HADIVSSILEYDADINQQ---------DNDGRTALSVSA 527 (978)
Q Consensus 498 ~~~~v~~Ll~~g~~~~~~---------~~~~~t~l~~a~ 527 (978)
+.+++++|+++|++++.. +..+.++++++.
T Consensus 151 ~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~ 189 (239)
T 1ycs_B 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM 189 (239)
T ss_dssp CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence 899999999988877665 334555555554
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=2.9e-23 Score=191.59 Aligned_cols=134 Identities=31% Similarity=0.441 Sum_probs=124.0
Q ss_pred CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC-CCc
Q psy9384 368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG-GRT 446 (978)
Q Consensus 368 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-~~t 446 (978)
+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++..+.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 45778889999999999999999999999999999999999999999999999 9999999999999999999988 899
Q ss_pred HHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384 447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD 511 (978)
Q Consensus 447 ~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 511 (978)
|||+|+..|+.++ +++|+++|++++..+..|.|||++|+..++.+++++|+++|++
T Consensus 81 ~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDT---------LVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHH---------HHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHH---------HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999998 9999999999999999999999999999999999999998875
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.88 E-value=6.2e-23 Score=194.47 Aligned_cols=143 Identities=29% Similarity=0.381 Sum_probs=111.1
Q ss_pred cccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc-HHHH
Q psy9384 372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRT-ALRA 450 (978)
Q Consensus 372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t-~l~~ 450 (978)
...+..|.||||+||..|+.++|++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+..|.| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 345667889999999999999999999999888888888999999885 88899999999999998888888888 9999
Q ss_pred HHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhh
Q psy9384 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALS 524 (978)
Q Consensus 451 A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~ 524 (978)
|+..|+.++ +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++.++..|.++.+
T Consensus 85 A~~~~~~~~---------v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 85 AAREGFLDT---------LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHTCHHH---------HHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHCCCHHH---------HHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 999998888 99999999999888888999999999999999999999999998888888887765
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=1.9e-23 Score=202.87 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=140.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhccCCCccccC-CCCCcHHHHHHHhCCH----HHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy9384 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVD-KHGQTALNVAAHQGFV----DAVQILLEAGANINHTDCEGWTPLRS 417 (978)
Q Consensus 343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~t~L~~ 417 (978)
+.++|+.|+..|+++.++.++. .+ ++..+ ..|+||||+|+..|+. +++++|+++|+++|.+|..|+||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~--~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE--KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH--HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHh--cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 3467999999999999999998 33 34445 7799999999999975 59999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHhCCCCCCcCCCCCC-cHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcH
Q psy9384 418 ASWGGH------SAVVKLLLQSGADVNCSDMGGR-TALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTA 489 (978)
Q Consensus 418 A~~~g~------~~iv~~Ll~~g~~~~~~~~~~~-t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~ 489 (978)
|+..|+ .+++++|+++|++++.+|..|. ||||+|+..+..+. ...+++++|++ +|++++.+|..|.||
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~----~~~~iv~~Ll~~~gad~~~~d~~G~Tp 157 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN----EMIPLYKLIFSQSGLQLLIKDKWGLTA 157 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHH----HHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChh----hHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence 999987 6889999999999999999999 99999999654321 11223999999 999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCc
Q psy9384 490 LIASAYMGHADIVSSILEYDADIN 513 (978)
Q Consensus 490 L~~A~~~~~~~~v~~Ll~~g~~~~ 513 (978)
|++|+..|+.+++++|++...+.+
T Consensus 158 L~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998654443
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.87 E-value=2.2e-22 Score=190.64 Aligned_cols=145 Identities=21% Similarity=0.253 Sum_probs=120.8
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc-HH
Q psy9384 337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWT-PL 415 (978)
Q Consensus 337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L 415 (978)
...+..+.|+||+|+..|+.+++++|++ .+.+++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 3456788999999999999999999999 78999999999999999996 99999999999999999999999999 99
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy9384 416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493 (978)
Q Consensus 416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A 493 (978)
|+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++++..+..|.||.+.+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV---------ARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHH---------HHHHSSCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHH---------HHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999999999999999999999999999 9999999999999999999887643
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.86 E-value=9.3e-22 Score=181.42 Aligned_cols=133 Identities=29% Similarity=0.342 Sum_probs=99.5
Q ss_pred CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCC
Q psy9384 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659 (978)
Q Consensus 580 g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~ 659 (978)
+++++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+. ++.+++++|+++|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g------------- 67 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG------------- 67 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-------------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-------------
Confidence 34566667777777777777777777777777777777777777777777777 7777777777777
Q ss_pred CCCccccCCC-CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCC
Q psy9384 660 SLDEQHRDNC-GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEA 728 (978)
Q Consensus 660 ~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~ 728 (978)
.+++.++.. |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++ |+
T Consensus 68 -~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Ga 135 (136)
T 1d9s_A 68 -AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TG 135 (136)
T ss_dssp -CCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HC
T ss_pred -CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 566667777 77777777777777777777777777777777777777777777777777777775 54
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=2.8e-21 Score=175.96 Aligned_cols=126 Identities=54% Similarity=0.765 Sum_probs=106.0
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~ 456 (978)
+|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD 511 (978)
Q Consensus 457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 511 (978)
.++ +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++
T Consensus 81 ~~~---------~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEV---------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHH---------HHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 887 8888888888888888888888888888888888888888764
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=1.8e-21 Score=179.53 Aligned_cols=125 Identities=41% Similarity=0.517 Sum_probs=92.1
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455 (978)
Q Consensus 376 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 455 (978)
..+.||||+||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy9384 456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509 (978)
Q Consensus 456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 509 (978)
+.++ +++|+++|++++..+..|.|||++|+..|+.+++++|+++|
T Consensus 92 ~~~~---------v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEI---------AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHH---------HHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 7776 77777777777777777777777777777777777777654
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.85 E-value=7.5e-21 Score=175.29 Aligned_cols=126 Identities=29% Similarity=0.459 Sum_probs=120.1
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy9384 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSAS 419 (978)
Q Consensus 340 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~ 419 (978)
...+.|+||+|+..|+.+++++|++ .+.+++..|..|.||||+||..|+.+++++|++.|++++..|..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 4456799999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcC
Q psy9384 420 WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476 (978)
Q Consensus 420 ~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g 476 (978)
..|+.+++++|+++|++++..+..|.|||++|+..|+.++ +++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~---------~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL---------AEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHH---------HHHHHHcC
Confidence 9999999999999999999999999999999999999999 99999876
No 89
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.84 E-value=1.6e-21 Score=189.19 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=118.2
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384 378 GQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSASWGGHS----AVVKLLLQSGADVNCSDMGGRTALRAAA 452 (978)
Q Consensus 378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g~~----~iv~~Ll~~g~~~~~~~~~~~t~l~~A~ 452 (978)
++++|+.|++.|+.+.++.+++.+. +..+ ..|+||||+|+.+|+. +++++|+++|++++.++..|.||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 3566777777777777777776553 3344 5577777777777764 3677777777777777777777777776
Q ss_pred hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCC-ChhhhhhhccC
Q psy9384 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR-TALSVSALCVP 531 (978)
Q Consensus 453 ~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-t~l~~a~~~~~ 531 (978)
..++.++ .+ ..+++++|+++|++++.++..|. ||||+|+....
T Consensus 84 ~~~~~~~---------~~---------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~ 127 (186)
T 3t8k_A 84 QGGGNDI---------TG---------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127 (186)
T ss_dssp HHCTTCH---------HH---------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCS
T ss_pred HcCCcch---------hh---------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCC
Confidence 6665543 11 24678888888888888888888 88888874211
Q ss_pred CCCChHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy9384 532 SSDGYAKVVSILLE-KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD 584 (978)
Q Consensus 532 ~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~ 584 (978)
...+..+++++|++ .|++++.++..|.|||++|++.++.+++++|.+...+.+
T Consensus 128 ~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp CHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 12345678888888 888888888888888888888888888888876544333
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.9e-20 Score=170.41 Aligned_cols=126 Identities=48% Similarity=0.716 Sum_probs=121.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
.|.|+||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence 47899999999999999999999 7889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC
Q psy9384 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH 478 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~ 478 (978)
|+.+++++|+++|++++..+..|.||+++|+..++.++ +++|+++|++
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~---------~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV---------VKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHH---------HHHHHHcCCC
Confidence 99999999999999999999999999999999999999 9999999975
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=2.1e-21 Score=179.42 Aligned_cols=128 Identities=34% Similarity=0.462 Sum_probs=96.4
Q ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384 373 LVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452 (978)
Q Consensus 373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~ 452 (978)
.+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 56777788888888888888888888888777777777888888888888888888888877777777777777777777
Q ss_pred hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy9384 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509 (978)
Q Consensus 453 ~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 509 (978)
..|+.++ +++|+++|++++..+..|.||+++|+..+..+++++|.+.+
T Consensus 85 ~~~~~~~---------v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 85 KNGHVDI---------VKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HTTCHHH---------HHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HcCCHHH---------HHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 7777777 77777777777777777777777777777777766665544
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.82 E-value=4.6e-20 Score=170.40 Aligned_cols=129 Identities=30% Similarity=0.400 Sum_probs=111.0
Q ss_pred CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy9384 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692 (978)
Q Consensus 613 g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 692 (978)
|+++ ..+..|.||||+|+..|+.+++++|++.| .+++.++..|.||||+|+..|+.+++++|+++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 65 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNG--------------SDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTT--------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcC--------------CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 4566 66788889999999999999999999888 67778888899999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHH
Q psy9384 693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLL 762 (978)
Q Consensus 693 g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll 762 (978)
|++++..|..|.||||+|+..|+.+++++|++. |++++.+|..|.|||++|+ ..+..+++++|.
T Consensus 66 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~-----~~~~~~~l~~l~ 129 (137)
T 3c5r_A 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTD-----DESMKSLLLLPE 129 (137)
T ss_dssp TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCC-----CHHHHHHHSCC-
T ss_pred CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHh-----hccHHHHHhhcc
Confidence 999999888899999999999999999999986 9999999999999999998 888888888777
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=5.5e-20 Score=179.36 Aligned_cols=141 Identities=26% Similarity=0.292 Sum_probs=130.2
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHH
Q psy9384 339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRS 417 (978)
Q Consensus 339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~ 417 (978)
.+..|.||||+|+..|+.+++++|++ +.+++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 35678899999999999999999997 77889999999999999999999999999999999999998 889999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q psy9384 418 ASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497 (978)
Q Consensus 418 A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~ 497 (978)
|+..|+.+++++|+++|++++..+..|.|||++|+..++.+. +.++|++|+..|
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~--------------------------~~~~l~~a~~~~ 170 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP--------------------------KGNPMQFGRRIG 170 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCC--------------------------CCSHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcc--------------------------cccHHHHHHHcC
Confidence 999999999999999999999999999999999987655433 578999999999
Q ss_pred CHHHHHHHHHc
Q psy9384 498 HADIVSSILEY 508 (978)
Q Consensus 498 ~~~~v~~Ll~~ 508 (978)
+.+++++|.++
T Consensus 171 ~~~i~~~L~~~ 181 (183)
T 3deo_A 171 LEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.80 E-value=1.4e-19 Score=185.36 Aligned_cols=143 Identities=26% Similarity=0.289 Sum_probs=131.3
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH
Q psy9384 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSA 418 (978)
Q Consensus 340 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A 418 (978)
+..|.||||+|+..|+.+++++|++ +.+++..|..|.||||+||..|+.++|++|+++|++++..+ ..|+||||+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 4577899999999999999999997 67899999999999999999999999999999999999998 7899999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy9384 419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498 (978)
Q Consensus 419 ~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~ 498 (978)
+..|+.+++++|+++|++++..+..|.||||+|+..++. ..+.+||++|+..|+
T Consensus 119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~--------------------------~~~~~~l~~a~~~g~ 172 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------------------------TPKGNPMQFGRRIGL 172 (244)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT--------------------------CCCSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc--------------------------cCCCCHHHHHHHcCh
Confidence 999999999999999999999999999999999864332 347899999999999
Q ss_pred HHHHHHHHHcCCC
Q psy9384 499 ADIVSSILEYDAD 511 (978)
Q Consensus 499 ~~~v~~Ll~~g~~ 511 (978)
.+++++|++++.+
T Consensus 173 ~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 173 EKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHEE
T ss_pred HHHHHHHHHhccc
Confidence 9999999987543
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.80 E-value=6.2e-20 Score=165.82 Aligned_cols=108 Identities=32% Similarity=0.434 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~ 456 (978)
.|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~ 85 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy9384 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493 (978)
Q Consensus 457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A 493 (978)
.++ +++|+++|++++..+..|.||+++|
T Consensus 86 ~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 86 VSC---------VKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHH---------HHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHH---------HHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 555 5555555555555555555555555
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.80 E-value=7e-20 Score=178.61 Aligned_cols=139 Identities=29% Similarity=0.312 Sum_probs=116.9
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHh
Q psy9384 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAW 453 (978)
Q Consensus 375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~ 453 (978)
+..|.||||+||..|+.+++++|++ |++++..|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 4577899999999999999999999 99999999999999999999999999999999999999888 789999999999
Q ss_pred cCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCC
Q psy9384 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533 (978)
Q Consensus 454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~ 533 (978)
.|+.++ +++|+++|++++.++..|.|||++|+..++. ..+.+++++++ .
T Consensus 120 ~~~~~~---------v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~-----~ 168 (183)
T 3deo_A 120 YVRPEV---------VEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGR-----R 168 (183)
T ss_dssp TTCHHH---------HHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHH-----H
T ss_pred cCcHHH---------HHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHH-----H
Confidence 999988 9999999999999999999999999874322 12345666665 4
Q ss_pred CChHHHHHHHHh
Q psy9384 534 DGYAKVVSILLE 545 (978)
Q Consensus 534 ~~~~~~v~~Ll~ 545 (978)
.+..+++++|.+
T Consensus 169 ~~~~~i~~~L~~ 180 (183)
T 3deo_A 169 IGLEKVINVLEG 180 (183)
T ss_dssp HHHHHHHHHHHT
T ss_pred cCHHHHHHHHHH
Confidence 556666666654
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=4.3e-20 Score=186.80 Aligned_cols=135 Identities=28% Similarity=0.361 Sum_probs=107.2
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHH
Q psy9384 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS-GADVNCSDMGGRTALRAAA 452 (978)
Q Consensus 374 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~A~ 452 (978)
.+..|.||||+||..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 355678899999999999999999999988888888899999999999999999999988 8888888888889999999
Q ss_pred hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCC
Q psy9384 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517 (978)
Q Consensus 453 ~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 517 (978)
..|+.++ +++|+++|++++..+..|.|||++|+..++.++++.|++.|+.....+.
T Consensus 149 ~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~ 204 (222)
T 3ehr_A 149 WKGYADI---------VQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA 204 (222)
T ss_dssp HHTCHHH---------HHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred HcCCHHH---------HHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence 9888888 8999998998888888889999999988888999888888877655443
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=189.99 Aligned_cols=139 Identities=20% Similarity=0.182 Sum_probs=110.3
Q ss_pred chHHHHHHHcCCHHHHHHHHHhccCCCccc------cCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384 344 QSVLHKLCAENNINLLKTFLKSCEALDLEL------VDKHGQTALNVAAHQ---GFVDAVQILLEAGANINHTDCEGWTP 414 (978)
Q Consensus 344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~------~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~ 414 (978)
.++|+.|+..|+++.++.|++ .+.+++. .+..|.||||+||.. |+.+++++|+++|++++..|..|+||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH--TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred HHHHhhhhhccCHHHHHHHHh--cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 467888888888888888887 7777776 577888888888887 78888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy9384 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494 (978)
Q Consensus 415 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~ 494 (978)
||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.++ +++|+++|++ .+.||||+|+
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~i---------v~~Ll~~ga~------~g~tpLh~A~ 294 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC---------EELLEQAQAG------TFAFPLHVDY 294 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHH---------HHHHHHHHHH------TTSSCCC---
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH---------HHHHHHhcCC------CCCChhHHHH
Confidence 888888888888888888888888888888888888888888888 8888887765 3678888888
Q ss_pred HcCCH
Q psy9384 495 YMGHA 499 (978)
Q Consensus 495 ~~~~~ 499 (978)
..|+.
T Consensus 295 ~~g~~ 299 (301)
T 2b0o_E 295 SWVIS 299 (301)
T ss_dssp -----
T ss_pred hcCCc
Confidence 77653
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=185.81 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=125.4
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINH------TDCEGWTPLRSASWG---GHSAVVKLLLQSGADVNCSDMGGRTA 447 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~ 447 (978)
...++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++..+..|.||
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 345789999999999999999999999988 688999999999997 89999999999999999999999999
Q ss_pred HHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527 (978)
Q Consensus 448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 527 (978)
||+|+..|+.++ +++|+++|++++..|..|.|||++|+..|+.+++++|+++|++ .+.|||++|+
T Consensus 230 Lh~A~~~g~~~~---------v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~ 294 (301)
T 2b0o_E 230 LHYAALYNQPDC---------LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDY 294 (301)
T ss_dssp HHHHHHTTCHHH---------HHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC---
T ss_pred HHHHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHH
Confidence 999999999999 9999999999999999999999999999999999999999876 4789999998
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.78 E-value=7.5e-19 Score=158.63 Aligned_cols=119 Identities=29% Similarity=0.374 Sum_probs=110.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q psy9384 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699 (978)
Q Consensus 620 ~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 699 (978)
+..+.||||.|+..|+.+++++|++.| .+++.++..|.||||+|+..++.+++++|+++|++++..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 69 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKG--------------EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTT--------------CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcC--------------CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence 456789999999999999999999999 788889999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHH
Q psy9384 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLI 758 (978)
Q Consensus 700 d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~ 758 (978)
|..|.||||+|+..|+.+++++|+++ |++++.+|..|.|||++|. ..+..+++
T Consensus 70 d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~-----~~~~~~ll 122 (123)
T 3aaa_C 70 DKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATD-----NQAIKALL 122 (123)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCC-----CHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhC-----CHHHHHHh
Confidence 99999999999999999999999997 9999999999999999998 66666654
No 101
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.78 E-value=2.7e-19 Score=183.11 Aligned_cols=111 Identities=33% Similarity=0.338 Sum_probs=99.8
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHh
Q psy9384 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAW 453 (978)
Q Consensus 375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~ 453 (978)
+..|.||||+||..|+.++|++|++ |++++..|..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 3467899999999999999999999 89999999999999999999999999999999999998887 778899999999
Q ss_pred cCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q psy9384 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY 495 (978)
Q Consensus 454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~ 495 (978)
.|+.++ +++|+++|++++..+..|.|||++|+.
T Consensus 121 ~g~~~~---------v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 121 YVRPEV---------VEALVELGADIEVEDERGLTALELARE 153 (244)
T ss_dssp TTCHHH---------HHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cCCHHH---------HHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 999888 999999999998888889999998885
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.78 E-value=1.5e-19 Score=182.85 Aligned_cols=138 Identities=25% Similarity=0.367 Sum_probs=118.0
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Q psy9384 337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPL 415 (978)
Q Consensus 337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L 415 (978)
+..+..|.|+||+|+..|+.+++++|++ .+.+++..|..|.||||+||..|+.++|++|++. |++++..|..|.|||
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLD--NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred cccccccccccccccccCcHHHHHHHHh--CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence 4456678899999999999999999999 8899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCC
Q psy9384 416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE 485 (978)
Q Consensus 416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~ 485 (978)
|+|+..|+.+++++|+++|++++..+..|.|||++|+..++.++ ++.|++.|+..+..+..
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~---------l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL---------LKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHH---------HC---------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHH---------HHHHhccchhhhccchh
Confidence 99999999999999999999999999999999999999999998 99999999877655543
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.76 E-value=3.8e-18 Score=145.02 Aligned_cols=93 Identities=57% Similarity=0.828 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456 (978)
Q Consensus 377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~ 456 (978)
+|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ceeeeeccchHHHHHHHHcCCC
Q psy9384 457 LEVTIVLGPLCVVKLLLAAGAH 478 (978)
Q Consensus 457 ~~i~~~~~~~~vv~~Ll~~g~~ 478 (978)
.++ +++|+++|++
T Consensus 81 ~~~---------~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEV---------VKLLLEAGAY 93 (93)
T ss_dssp HHH---------HHHHHHTTCC
T ss_pred HHH---------HHHHHHcCCC
Confidence 777 7777777753
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.74 E-value=4e-18 Score=183.17 Aligned_cols=126 Identities=32% Similarity=0.369 Sum_probs=103.3
Q ss_pred CCCCCcHHHHHHHh-CCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384 375 DKHGQTALNVAAHQ-GFVDAVQILLEAGANINHTD--CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451 (978)
Q Consensus 375 ~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A 451 (978)
...+.|+||.|+.. |+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34456788888888 88888888888888888777 7788888888888888888888888888888888888888888
Q ss_pred HhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy9384 452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509 (978)
Q Consensus 452 ~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 509 (978)
+..|+.++ +++|+++|++++..+..|.|||++|+..++.+++++|++.+
T Consensus 276 ~~~g~~~~---------v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 276 TILGHTGL---------ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCcHHH---------HHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 88888887 88888888888888888888888888888888888888765
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.74 E-value=7.4e-18 Score=181.12 Aligned_cols=145 Identities=26% Similarity=0.334 Sum_probs=120.0
Q ss_pred cCCCchHHHHHHHc-CCHHHHHHHHHhccCCCccccC--CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy9384 340 DSKNQSVLHKLCAE-NNINLLKTFLKSCEALDLELVD--KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416 (978)
Q Consensus 340 ~~~~~~~l~~a~~~-~~~~~v~~ll~~~~~~~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~ 416 (978)
...+.++||.|+.. |++++++.|++ .+.+++..+ ..|.||||+||..|+.++|++|+++|++++..|..|+||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~--~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHH--TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHH--cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 33456899999999 99999999999 899999888 89999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC---CcccCCCCCcHHHHH
Q psy9384 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH---VNAADSEGRTALIAS 493 (978)
Q Consensus 417 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~---~~~~~~~~~t~L~~A 493 (978)
+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++ +++|+..+.. ....+..+.|++..+
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~i---------v~lLl~~~~~~~~~~~~~~~~~t~l~i~ 344 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI---------VTLLRLAKMREAEAAQGQAGDETYLDIF 344 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHHC-------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHH---------HHHHHHcCCCcccccccCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999 9999987633 223344455666554
Q ss_pred HH
Q psy9384 494 AY 495 (978)
Q Consensus 494 ~~ 495 (978)
..
T Consensus 345 ~~ 346 (368)
T 3jue_A 345 RD 346 (368)
T ss_dssp --
T ss_pred HH
Confidence 43
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.8e-17 Score=188.68 Aligned_cols=134 Identities=22% Similarity=0.192 Sum_probs=110.6
Q ss_pred CcHHHHHHHhCCHHHHHHHHHCCCCCCCC------CCCCCcHHHHHHH---cCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy9384 379 QTALNVAAHQGFVDAVQILLEAGANINHT------DCEGWTPLRSASW---GGHSAVVKLLLQSGADVNCSDMGGRTALR 449 (978)
Q Consensus 379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~~~t~L~~A~~---~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~ 449 (978)
.+.||.|+..|+.++|+.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++..+..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 46799999999999999999999988877 7888999999966 88899999999999999999999999999
Q ss_pred HHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384 450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527 (978)
Q Consensus 450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 527 (978)
+|+..|+.++ +++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++. +|+|.+.
T Consensus 213 ~A~~~g~~~~---------v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~ 275 (497)
T 3lvq_E 213 YAALYNQPDC---------LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDY 275 (497)
T ss_dssp HHTTTTCHHH---------HHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----------------
T ss_pred HHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeec
Confidence 9999999888 9999999999999999999999999999999999999999988765 4666554
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.73 E-value=2.5e-17 Score=139.93 Aligned_cols=93 Identities=40% Similarity=0.643 Sum_probs=88.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421 (978)
Q Consensus 342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 421 (978)
.|.||||+|+..|+.+++++|++ .+.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 37899999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCC
Q psy9384 422 GHSAVVKLLLQSGAD 436 (978)
Q Consensus 422 g~~~iv~~Ll~~g~~ 436 (978)
|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999974
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.3e-17 Score=189.72 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=118.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHhccCCCcccc------CCCCCcHHHHHHH---hCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy9384 345 SVLHKLCAENNINLLKTFLKSCEALDLELV------DKHGQTALNVAAH---QGFVDAVQILLEAGANINHTDCEGWTPL 415 (978)
Q Consensus 345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~------~~~~~t~L~~A~~---~g~~~~v~~Ll~~g~~~~~~~~~~~t~L 415 (978)
+.|+.|+..|+.+.++.|++ .|.+++.. +..|.||||+||. .|+.++|++|+++|+++|..|..|+|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~--~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHH--TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHh--hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 67999999999999999999 78888877 8899999999977 8999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q psy9384 416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY 495 (978)
Q Consensus 416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~ 495 (978)
|+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++ +++|+++|++++. +|+|.+..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~---------~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC---------EELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHH---------HHHHHHTCC------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH---------HHHHHHhCCCCCC------Ccceeecc
Confidence 99999999999999999999999999999999999999999999 9999999999875 46666543
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.73 E-value=2.5e-17 Score=171.38 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=117.4
Q ss_pred chHHHHHHHcCCHHHHHHHHHhccCCC------ccccCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384 344 QSVLHKLCAENNINLLKTFLKSCEALD------LELVDKHGQTALNVAAHQ---GFVDAVQILLEAGANINHTDCEGWTP 414 (978)
Q Consensus 344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~------~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~ 414 (978)
.++|+.|+..|+.+.++.+++ .+.+ ++..+..|.||||+||.. |+.+++++|+++|++++.+|..|+||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~--~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~Tp 208 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred hhhhhhHhhhcccHHHHHHHH--hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCH
Confidence 478999999999999999999 6666 445588999999999999 99999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCC
Q psy9384 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHV 479 (978)
Q Consensus 415 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~ 479 (978)
||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++ +++|+++|++.
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~---------v~~Ll~~ga~~ 264 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC---------EELLTQALSGR 264 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999 99999998753
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.72 E-value=3.4e-17 Score=170.38 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=117.2
Q ss_pred CcHHHHHHHhCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy9384 379 QTALNVAAHQGFVDAVQILLEAGANIN------HTDCEGWTPLRSASWG---GHSAVVKLLLQSGADVNCSDMGGRTALR 449 (978)
Q Consensus 379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~l~ 449 (978)
.++|+.|+..|+.+.++.+++.|++++ ..+..|.||||+|+.. |+.+++++|+++|++++..+..|.||||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence 457999999999999999999999844 4478899999999999 8999999999999999999999999999
Q ss_pred HHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384 450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD 511 (978)
Q Consensus 450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 511 (978)
+|+..|+.++ +++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus 211 ~A~~~g~~~~---------v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 211 YCCLTDNAEC---------LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHH---------HHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999 9999999999999999999999999999999999999999875
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.71 E-value=6.9e-18 Score=150.21 Aligned_cols=108 Identities=43% Similarity=0.549 Sum_probs=90.1
Q ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384 373 LVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452 (978)
Q Consensus 373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~ 452 (978)
.+|..|.||||+||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 45778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcH
Q psy9384 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489 (978)
Q Consensus 453 ~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~ 489 (978)
..++.++ +++|+++|++++..+..+.+|
T Consensus 84 ~~~~~~~---------~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 84 KNGHHEI---------VKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp TTTCHHH---------HHHHHTTSSSHHHHSCCCC--
T ss_pred HCCCHHH---------HHHHHHcCCCCCcCCcccccc
Confidence 8888888 888888888888887777765
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.68 E-value=4e-17 Score=145.26 Aligned_cols=109 Identities=31% Similarity=0.455 Sum_probs=102.0
Q ss_pred cccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy9384 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRS 417 (978)
Q Consensus 338 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~ 417 (978)
..|..|.|+||+|+..|+.+++++|++ .+.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTT--TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 357889999999999999999999999 789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy9384 418 ASWGGHSAVVKLLLQSGADVNCSDMGGRTAL 448 (978)
Q Consensus 418 A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l 448 (978)
|+..|+.+++++|+++|++++..+..+.+|-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999988888763
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.59 E-value=3e-15 Score=131.46 Aligned_cols=87 Identities=38% Similarity=0.481 Sum_probs=54.1
Q ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384 373 LVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452 (978)
Q Consensus 373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~ 452 (978)
..+.+|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCcee
Q psy9384 453 WGGHLEV 459 (978)
Q Consensus 453 ~~~~~~i 459 (978)
..|+.++
T Consensus 99 ~~~~~~~ 105 (110)
T 2zgd_A 99 DNGNEDL 105 (110)
T ss_dssp HHTCHHH
T ss_pred HcCCHHH
Confidence 6666665
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.55 E-value=1.6e-14 Score=126.68 Aligned_cols=94 Identities=26% Similarity=0.369 Sum_probs=85.7
Q ss_pred ccccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384 335 RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTP 414 (978)
Q Consensus 335 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~ 414 (978)
...-.+..|.|+||+|+..|+.+++++|++ .+.+++..|..|.||||+||..|+.+++++|+++|++++.+|..|.||
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 344567789999999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q psy9384 415 LRSASWGGHSAVVKLL 430 (978)
Q Consensus 415 L~~A~~~g~~~iv~~L 430 (978)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999987
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.75 E-value=9.6e-08 Score=95.97 Aligned_cols=192 Identities=16% Similarity=0.136 Sum_probs=112.3
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.||+-..+.+.+|+... ..+.++|+|+||+|||+++..+...+... .....|+..+... .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~---------~~~~~~~~~~~~~--~ 79 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGE---------NWRDNFIEMNASD--E 79 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGG---------GGGGGEEEEETTC--T
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhcc---------ccccceEEecccc--c
Confidence 56889999999999999864 23348999999999999999998554210 1112222222111 1
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
... ..++..+.++... .......+.++|||-+|...
T Consensus 80 ~~~-~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 80 RGI-DVVRHKIKEFART-------------------------------------------APIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp TCH-HHHHHHHHHHHTS-------------------------------------------CCSTTCSCEEEEEETGGGSC
T ss_pred cCh-HHHHHHHHHHhcc-------------------------------------------cCCCccCceEEEEeChhhcC
Confidence 111 1112222111111 00112456899999998876
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
.. ....|.+++... +.++.+++++++.........+.+..+.+...+ .+++..++...+...
T Consensus 116 ~~--------~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~----~~~~~~~l~~~~~~~-- 177 (226)
T 2chg_A 116 AD--------AQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP----KEAMKKRLLEICEKE-- 177 (226)
T ss_dssp HH--------HHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHHH--
T ss_pred HH--------HHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHHhCceeecCCCC----HHHHHHHHHHHHHHc--
Confidence 32 133455555532 346678888776543222233344456665444 477888887766421
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++..+.+.+.+.|++..+.-.++.+.
T Consensus 178 ----~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 178 ----GVKITEDGLEALIYISGGDFRKAINALQGAA 208 (226)
T ss_dssp ----TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223456778888999999988877777664
No 116
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.74 E-value=3.4e-08 Score=101.08 Aligned_cols=209 Identities=13% Similarity=0.104 Sum_probs=115.9
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.||+..++.+.+|+.... ..+.++|+|+||+|||+|+..+...+.. ...+....|. .
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~----------~~~~~~~~~~----~- 82 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNC----------ETGITATPCG----V- 82 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHC----------TTCSCSSCCS----C-
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcC----------CCCCCCCCCc----c-
Confidence 568999999999999998642 3458999999999999999999854321 0001000111 0
Q ss_pred cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
... +.++... .+.+ ..... .. ......+..++.. +.......++.++|||-+|..
T Consensus 83 --~~~-----~~~~~~~~~~~~-------~~~~~-~~--------~~~~~~~~~~~~~-~~~~~~~~~~~vlviDe~~~l 138 (250)
T 1njg_A 83 --CDN-----CREIEQGRFVDL-------IEIDA-AS--------RTKVEDTRDLLDN-VQYAPARGRFKVYLIDEVHML 138 (250)
T ss_dssp --SHH-----HHHHHTTCCSSE-------EEEET-TC--------GGGHHHHHHHHHS-CCCSCSSSSSEEEEEETGGGS
T ss_pred --cHH-----HHHHhccCCcce-------EEecC-cc--------cccHHHHHHHHHH-hhhchhcCCceEEEEECcccc
Confidence 000 1111111 1110 00000 00 0001223333332 112222345689999999987
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
+.. ....|.+++. ..+.++.+|+++++.........+....+.+...+ .+|+..++..++...
T Consensus 139 ~~~--------~~~~l~~~l~----~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~----~~e~~~~l~~~~~~~- 201 (250)
T 1njg_A 139 SRH--------SFNALLKTLE----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD----VEQIRHQLEHILNEE- 201 (250)
T ss_dssp CHH--------HHHHHHHHHH----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHHT-
T ss_pred cHH--------HHHHHHHHHh----cCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCC----HHHHHHHHHHHHHhc-
Confidence 532 1233444443 23456788888876543222233334556665443 378888888776521
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++..+.+.+.++|++..+...++.+.
T Consensus 202 -----~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 202 -----HIAHEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp -----TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223456778899999999999888877654
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.64 E-value=5e-07 Score=99.31 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=125.4
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.||+-.++++.+|+..-- ..+..+.++|+|+||+|||+++..+...+.... ........+++.+ -...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-----~~~~~~~~~~~i~--~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARA-----SSLGVLVKPIYVN--ARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-----HHHTCCEEEEEEE--TTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-----hccCCCeEEEEEE--CCcC
Confidence 679999999999999986421 123556899999999999999999985542100 0001133344433 2344
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.++..++..++.+|....|.. . .+. ..+.+.+...+.. ...+.++|||-+|...
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~---------~-------------~~~-~~~~~~l~~~l~~---~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFT---------G-------------LSV-GEVYERLVKRLSR---LRGIYIIVLDEIDFLP 143 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSS---------C-------------CCH-HHHHHHHHHHHTT---SCSEEEEEEETTTHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCC---------C-------------CCH-HHHHHHHHHHHhc---cCCeEEEEEccHhhhc
Confidence 577888999999885432210 0 001 1111222222222 3457899999999986
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCC-CCceeeeeeecccc--cchhhc-ccCc--cccccccccchhhhhHHHHHHHHH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLF-PPWLFLFCTVRRQS--KSIKKM-FLGF--HKLSLDDLRKSHVIRDMQQYILLR 243 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~sr~~~--~~i~~~-~~~~--~~i~l~~~~~~~~~~Di~~yi~~~ 243 (978)
... ...+.+..++....... +.++.+|+++++.. ..+... .+.+ ..+.+...+ .+|+..++..+
T Consensus 144 ~~~------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~----~~~~~~il~~~ 213 (387)
T 2v1u_A 144 KRP------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYT----APQLRDILETR 213 (387)
T ss_dssp HST------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCC----HHHHHHHHHHH
T ss_pred ccC------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCC----HHHHHHHHHHH
Confidence 320 01234555555332111 44667777776652 112211 2222 346665444 47888888877
Q ss_pred hcCchHHHhhcCcChHHHHHHHHhhch---hhHHHHHHHHhhh
Q psy9384 244 LASEESLRVHMNRDTAEMLNQLHIKSN---GCFLYLERVLDGI 283 (978)
Q Consensus 244 l~~~~~~~~~~~~~~~~i~~~l~~~a~---g~flw~~~~~~~l 283 (978)
+.... ......++..+.+.+.+. |.+..+.-.++..
T Consensus 214 ~~~~~----~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 214 AEEAF----NPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp HHHHB----CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHhhc----cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 75210 011223345677777777 9887666555554
No 118
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.64 E-value=2.4e-07 Score=100.30 Aligned_cols=233 Identities=12% Similarity=0.046 Sum_probs=128.4
Q ss_pred CCCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecc
Q psy9384 3 TETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFC 82 (978)
Q Consensus 3 ~~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~ 82 (978)
...+.....|+||+-.++++.+|+.. + +++.|+|++|+|||+|+..+.+.. + +.|+-|
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------------~--~~~~~~ 62 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------------P--GILIDC 62 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------------S--EEEEEH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------------C--cEEEEe
Confidence 34455667899999999999999984 2 689999999999999999997331 1 333333
Q ss_pred ccCC--CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhc-chhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEE
Q psy9384 83 QSYD--LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVE-DESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYF 159 (978)
Q Consensus 83 ~~~~--~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 159 (978)
.... ....+...+++.+..+|... +.+.+... ....... ......... ..+.+.+...... ..+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~----~~~~v 131 (350)
T 2qen_A 63 RELYAERGHITREELIKELQSTISPF-----QKFQSKFKISLNLKFL-TLEPRKLSL-REVFRELNDLGEE----LGEFI 131 (350)
T ss_dssp HHHHHTTTCBCHHHHHHHHHHHSCSH-----HHHHHHHTCCCCCGGG-TSCGGGCCH-HHHHHHHHHHHHH----HSCEE
T ss_pred ecccccccCCCHHHHHHHHHHHHHHH-----HhHhhhceeEEEecce-eeccccchH-HHHHHHHHHHHhc----cCCEE
Confidence 3111 12235666777766655421 11111100 0000000 000000111 2233333332221 13799
Q ss_pred EEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc--cch------hhccc-C-ccccccccccc
Q psy9384 160 ILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS--KSI------KKMFL-G-FHKLSLDDLRK 229 (978)
Q Consensus 160 iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~--~~i------~~~~~-~-~~~i~l~~~~~ 229 (978)
||||-++.++... +....++...|..+.... .++.+++++++.. ..+ ...+. . ...+.+...+.
T Consensus 132 lvlDe~~~~~~~~-~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~ 205 (350)
T 2qen_A 132 VAFDEAQYLRFYG-SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDK 205 (350)
T ss_dssp EEEETGGGGGGBT-TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCH
T ss_pred EEEeCHHHHhccC-ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCH
Confidence 9999999987410 000223455565555432 2578888877642 111 11111 1 12466654443
Q ss_pred hhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 230 SHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 230 ~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
+++..++...+... ......+....+.+.++|+++++...+..+.
T Consensus 206 ----~e~~~~l~~~~~~~------~~~~~~~~~~~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 206 ----DTSVEFLKRGFREV------NLDVPENEIEEAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp ----HHHHHHHHHHHHTT------TCCCCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHc------CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77888887655421 1123345678899999999999998877653
No 119
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.55 E-value=9.6e-07 Score=101.10 Aligned_cols=207 Identities=13% Similarity=0.142 Sum_probs=122.0
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc---CCCCCchhhhhhhhccceeeeccccCCCC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF---PSAESSFSQQHNLRKKLLAYHFCQSYDLA 88 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~---~l~~~~~~~~~~~~~~~~~~ff~~~~~~~ 88 (978)
| ||+--++++.+||... .....+++.|+|.+|.|||+|+..+.. +-... .-..++| .+-+....
T Consensus 131 ~-GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~--------~F~~~~w-v~vs~~~~ 197 (549)
T 2a5y_B 131 Y-IREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI--------NYDSIVW-LKDSGTAP 197 (549)
T ss_dssp C-CCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT--------TBSEEEE-EECCCCST
T ss_pred C-CchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc--------cCCcEEE-EEECCCCC
Confidence 6 9999999999999764 123468999999999999999999994 21110 0122333 32222222
Q ss_pred ccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 89 TFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 89 ~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
.++..+++.++.||....... .... .. ....+.+...+.+.+.. .+++.||+|.++..
T Consensus 198 -~~~~~~~~~il~~l~~~~~~~------~~~~--~~---------~~~~~~l~~~l~~~L~~----~kr~LlVLDdv~~~ 255 (549)
T 2a5y_B 198 -KSTFDLFTDILLMLKSEDDLL------NFPS--VE---------HVTSVVLKRMICNALID----RPNTLFVFDDVVQE 255 (549)
T ss_dssp -THHHHHHHHHHHHHTTTSCCT------TCCC--CT---------TCCHHHHHHHHHHHHTT----STTEEEEEEEECCH
T ss_pred -CCHHHHHHHHHHHHhcCcccc------cccc--cc---------cccHHHHHHHHHHHHcC----CCcEEEEEECCCCc
Confidence 468899999999997642100 0000 00 00012233333333322 23899999999885
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhccc-CccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFL-GFHKLSLDDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~-~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
+. + .+... ++.++|+|||... +..... ....+.+...+. +|-..++..+....
T Consensus 256 ~~-------------~-~~~~~------~gs~ilvTTR~~~--v~~~~~~~~~~~~l~~L~~----~ea~~Lf~~~a~~~ 309 (549)
T 2a5y_B 256 ET-------------I-RWAQE------LRLRCLVTTRDVE--ISNAASQTCEFIEVTSLEI----DECYDFLEAYGMPM 309 (549)
T ss_dssp HH-------------H-HHHHH------TTCEEEEEESBGG--GGGGCCSCEEEEECCCCCH----HHHHHHHHHTSCCC
T ss_pred hh-------------h-ccccc------CCCEEEEEcCCHH--HHHHcCCCCeEEECCCCCH----HHHHHHHHHHhcCC
Confidence 41 1 22211 2448899988754 333332 223466665443 45555555443211
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
. ......++..+|+++.+|.+|-++++...+.
T Consensus 310 ~-----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~ 341 (549)
T 2a5y_B 310 P-----VGEKEEDVLNKTIELSSGNPATLMMFFKSCE 341 (549)
T ss_dssp C-------CHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred C-----CchhHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence 1 1133456889999999999999998876664
No 120
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.52 E-value=4.4e-07 Score=100.65 Aligned_cols=229 Identities=13% Similarity=0.027 Sum_probs=124.7
Q ss_pred CcccccccchHHHHHHH-hcCCCCCCCCCceEEE--EcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384 10 KKFFCREWAFVKLVHCL-ESKTNSKPGNNGGALI--IGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD 86 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl-~~~~~~~~~~~~~l~l--~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~ 86 (978)
..|+||+--++++.+|+ ..-........+.++| +|+||+|||+|+..+.+.+..... .......+.|+-|..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 96 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA---KEGLTVKQAYVNAFN-- 96 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH---HTTCCEEEEEEEGGG--
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh---ccCCceeEEEEECCC--
Confidence 67999999888888887 4210000014568899 999999999999999855321000 000123344554432
Q ss_pred CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384 87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID 166 (978)
Q Consensus 87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD 166 (978)
..++..+++.++.+|....|.. . .+. ..+.+.+...+.. ...+++||||-+|
T Consensus 97 --~~~~~~~~~~l~~~l~~~~~~~-------------~---------~~~-~~~~~~l~~~l~~---~~~~~llvlDe~~ 148 (412)
T 1w5s_A 97 --APNLYTILSLIVRQTGYPIQVR-------------G---------APA-LDILKALVDNLYV---ENHYLLVILDEFQ 148 (412)
T ss_dssp --CCSHHHHHHHHHHHHTCCCCCT-------------T---------CCH-HHHHHHHHHHHHH---HTCEEEEEEESTH
T ss_pred --CCCHHHHHHHHHHHhCCCCCCC-------------C---------CCH-HHHHHHHHHHHHh---cCCeEEEEEeCHH
Confidence 2477888999998885432210 0 000 1111222222221 2457899999999
Q ss_pred cccccCCCcCCCcchhhHHHHHHhccC-CCCCceeeeeeecccc---------cchhhcccCccccccccccchhhhhHH
Q psy9384 167 ETHVTNKKIYSDKATCSIADLLARNHH-LFPPWLFLFCTVRRQS---------KSIKKMFLGFHKLSLDDLRKSHVIRDM 236 (978)
Q Consensus 167 E~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~sr~~~---------~~i~~~~~~~~~i~l~~~~~~~~~~Di 236 (978)
......+ ...+.+..+.+++..... .....+.+|++++... +.+...+. ..+.+...+. +++
T Consensus 149 ~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~--~~i~l~~l~~----~e~ 220 (412)
T 1w5s_A 149 SMLSSPR--IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG--FKLHLPAYKS----REL 220 (412)
T ss_dssp HHHSCTT--SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS--EEEECCCCCH----HHH
T ss_pred HHhhccC--cchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcC--CeeeeCCCCH----HHH
Confidence 9863200 011223333333332210 0014677887776432 11112221 2266654443 688
Q ss_pred HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhch------hhHHHHHHHHhhh
Q psy9384 237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSN------GCFLYLERVLDGI 283 (978)
Q Consensus 237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~------g~flw~~~~~~~l 283 (978)
..++..++.... .......+..+.+.+.+. |.+.++...++..
T Consensus 221 ~~ll~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a 269 (412)
T 1w5s_A 221 YTILEQRAELGL----RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMA 269 (412)
T ss_dssp HHHHHHHHHHHB----CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 888887765211 111234567788888888 9999888777654
No 121
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=1.1e-06 Score=93.91 Aligned_cols=193 Identities=13% Similarity=0.109 Sum_probs=110.5
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.||+-..+.+.+|+...+ .+. ++|+|+||+|||+++..+...+... .....+++.+..+ .
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~-----~~~-~ll~G~~G~GKt~la~~l~~~l~~~---------~~~~~~~~~~~~~--~ 83 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN-----MPH-MIISGMPGIGKTTSVHCLAHELLGR---------SYADGVLELNASD--D 83 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC-----CCC-EEEECSTTSSHHHHHHHHHHHHHGG---------GHHHHEEEECTTS--C
T ss_pred HHHHCCHHHHHHHHHHHHcCC-----CCe-EEEECcCCCCHHHHHHHHHHHhcCC---------cccCCEEEecCcc--c
Confidence 568899999999999998631 223 8999999999999999998554211 1111122222111 1
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.. ...++.++.++.... ......++.++|||-+|...
T Consensus 84 ~~-~~~i~~~~~~~~~~~------------------------------------------~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 84 RG-IDVVRNQIKHFAQKK------------------------------------------LHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp CS-HHHHHTHHHHHHHBC------------------------------------------CCCCTTCCEEEEEESGGGSC
T ss_pred cC-hHHHHHHHHHHHhcc------------------------------------------ccCCCCCceEEEEECcccCC
Confidence 11 122222222222100 00001236789999988875
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
... ...|.+++.. .+.++.+++++++.........+.+..+.+...+ .+++..++..++...
T Consensus 121 ~~~--------~~~L~~~le~----~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~----~~~~~~~l~~~~~~~-- 182 (323)
T 1sxj_B 121 AGA--------QQALRRTMEL----YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS----DEDVLKRLLQIIKLE-- 182 (323)
T ss_dssp HHH--------HHTTHHHHHH----TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHHH--
T ss_pred HHH--------HHHHHHHHhc----cCCCceEEEEeCChhhchhHHHhhceEEeecCCC----HHHHHHHHHHHHHHc--
Confidence 321 2234444443 2346677777766443222333344556665443 378888888766421
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++..+.+++.++|....+.-.++.+.
T Consensus 183 ----~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 183 ----DVKYTNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp ----TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1123356678889999999887776666554
No 122
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.43 E-value=2.9e-06 Score=91.94 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=121.9
Q ss_pred CCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecccc
Q psy9384 5 TPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQS 84 (978)
Q Consensus 5 ~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~ 84 (978)
.+.....|+||+-.++.+.+ +.. ++++|+|++|+|||+|+..+.+.+. . .+.|+-+..
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~-----------~-~~~~~~~~~ 65 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN-----------L-PYIYLDLRK 65 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT-----------C-CEEEEEGGG
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC-----------C-CEEEEEchh
Confidence 34455789999999999888 652 5999999999999999999984421 1 233433332
Q ss_pred CC-CCccCHHHHHHHHHHHHhcCC---CchhHHHHhhhc--chhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcE
Q psy9384 85 YD-LATFSVQNFIQSLVEQFSSSE---SPFSEAFSTIVE--DESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSY 158 (978)
Q Consensus 85 ~~-~~~~~~~~~l~sl~~QL~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 158 (978)
.. ....+...+++.+..+|.... ..+.+.+..+.. .+..................+.+. +.+... .++
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~--~~~ 139 (357)
T 2fna_A 66 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLES----FEQASK--DNV 139 (357)
T ss_dssp GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHH----HHHTCS--SCE
T ss_pred hccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHH----HHhcCC--CCe
Confidence 11 112344556666655553210 001110000000 000000000000000111222222 223221 379
Q ss_pred EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc---------cc-C-ccccccccc
Q psy9384 159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM---------FL-G-FHKLSLDDL 227 (978)
Q Consensus 159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~---------~~-~-~~~i~l~~~ 227 (978)
+||||-++.++... ..++...|..+.... .++.+++++|+... +... +. . ...+.+...
T Consensus 140 vlvlDe~~~~~~~~----~~~~~~~l~~~~~~~-----~~~~~i~~g~~~~~-l~~~l~~~~~~~~l~~r~~~~i~l~~l 209 (357)
T 2fna_A 140 IIVLDEAQELVKLR----GVNLLPALAYAYDNL-----KRIKFIMSGSEMGL-LYDYLRVEDPESPLFGRAFSTVELKPF 209 (357)
T ss_dssp EEEEETGGGGGGCT----TCCCHHHHHHHHHHC-----TTEEEEEEESSHHH-HHHHTTTTCTTSTTTTCCCEEEEECCC
T ss_pred EEEEECHHHhhccC----chhHHHHHHHHHHcC-----CCeEEEEEcCchHH-HHHHHhccCCCCccccCccceeecCCC
Confidence 99999999987421 234566666665532 25688888886431 1111 11 1 134666544
Q ss_pred cchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 228 RKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 228 ~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
+. +++..++...+... ...... . ..+.+.++|+++++...+..+.
T Consensus 210 ~~----~e~~~~l~~~~~~~----~~~~~~---~-~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 210 SR----EEAIEFLRRGFQEA----DIDFKD---Y-EVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp CH----HHHHHHHHHHHHHH----TCCCCC---H-HHHHHHHCSCHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHHHc----CCCCCc---H-HHHHHHhCCCHHHHHHHHHHHc
Confidence 43 67888887765411 111111 1 7888999999999998887764
No 123
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.43 E-value=9.7e-07 Score=102.88 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=118.5
Q ss_pred CCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccc
Q psy9384 4 ETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQ 83 (978)
Q Consensus 4 ~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~ 83 (978)
.-|-....|+||+-.++++.+|+... .++.+++.|+|++|.|||+|+..++..... .. ..-...+.+....
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~--~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSL---LE--GCFPGGVHWVSVG 188 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHH---HH--HHCTTCEEEEEEE
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhH---HH--hhCCCceEEEECC
Confidence 34666788999999999999999852 235689999999999999999999854210 00 0001123333322
Q ss_pred cCCCCccCHHHHHHHH---HHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEE
Q psy9384 84 SYDLATFSVQNFIQSL---VEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFI 160 (978)
Q Consensus 84 ~~~~~~~~~~~~l~sl---~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i 160 (978)
. . ....++..+ +.+|...... .. .. ....+.+...+...+.. ..+++++
T Consensus 189 ~--~---~~~~~~~~l~~l~~~l~~~~~~---------~~---~~--------~~~~~~~~~~l~~~l~~---~~~~~LL 240 (591)
T 1z6t_A 189 K--Q---DKSGLLMKLQNLCTRLDQDESF---------SQ---RL--------PLNIEEAKDRLRILMLR---KHPRSLL 240 (591)
T ss_dssp S--C---CHHHHHHHHHHHHHHHCSSCCS---------CS---SC--------CCSHHHHHHHHHHHHHH---TCTTCEE
T ss_pred C--C---chHHHHHHHHHHHHHhcccccc---------cc---CC--------CCCHHHHHHHHHHHHcc---CCCCeEE
Confidence 1 1 222333333 3333211000 00 00 00112222233333333 2357999
Q ss_pred EEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHH
Q psy9384 161 LVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYI 240 (978)
Q Consensus 161 viDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi 240 (978)
|+|.++... .+. .++++.++|+|||.... .....+ ....+... ..-..+|...++
T Consensus 241 VLDdv~~~~-------------~l~--------~l~~~~~ilvTsR~~~~--~~~~~~-~~~~v~~l-~~L~~~ea~~L~ 295 (591)
T 1z6t_A 241 ILDDVWDSW-------------VLK--------AFDSQCQILLTTRDKSV--TDSVMG-PKYVVPVE-SSLGKEKGLEIL 295 (591)
T ss_dssp EEEEECCHH-------------HHH--------TTCSSCEEEEEESCGGG--GTTCCS-CEEEEECC-SSCCHHHHHHHH
T ss_pred EEeCCCCHH-------------HHH--------HhcCCCeEEEECCCcHH--HHhcCC-CceEeecC-CCCCHHHHHHHH
Confidence 999997532 121 23556789999987652 222111 12222210 112346777777
Q ss_pred HHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhc
Q psy9384 241 LLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISN 285 (978)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~ 285 (978)
..++... .....+...+|+++.+|.++-+.++...+..
T Consensus 296 ~~~~~~~-------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~ 333 (591)
T 1z6t_A 296 SLFVNMK-------KADLPEQAHSIIKECKGSPLVVSLIGALLRD 333 (591)
T ss_dssp HHHHTSC-------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCC-------cccccHHHHHHHHHhCCCcHHHHHHHHHHhc
Confidence 7665421 1111346789999999999999999888864
No 124
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.41 E-value=3.3e-06 Score=92.73 Aligned_cols=218 Identities=12% Similarity=0.070 Sum_probs=119.7
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCc--eEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNG--GALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDL 87 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~--~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~ 87 (978)
..|.||+-.++++.+|+.... ....+. .++|+|+||+|||+|+..+...+.... ...+.|..|.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--------~~~~~~i~~~---- 82 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWL--RNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--------TARFVYINGF---- 82 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHH--HSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--------CCEEEEEETT----
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--------CeeEEEEeCc----
Confidence 679999998888877776510 001334 799999999999999999986543210 2234444433
Q ss_pred CccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc
Q psy9384 88 ATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE 167 (978)
Q Consensus 88 ~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE 167 (978)
...++..+++.++.++....+.. . .+. ..+.+.+...+.. ...+.+||||-+|.
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~---------~-------------~~~-~~~~~~l~~~l~~---~~~~~vlilDE~~~ 136 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIPFPRR---------G-------------LSR-DEFLALLVEHLRE---RDLYMFLVLDDAFN 136 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCCCCSS---------C-------------CCH-HHHHHHHHHHHHH---TTCCEEEEEETGGG
T ss_pred cCCCHHHHHHHHHHHhCccCCCC---------C-------------CCH-HHHHHHHHHHHhh---cCCeEEEEEECccc
Confidence 23467788888888875432210 0 000 1111122222222 24578999999888
Q ss_pred ccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc--chhhc-ccCcc--ccccccccchhhhhHHHHHHHH
Q psy9384 168 THVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK--SIKKM-FLGFH--KLSLDDLRKSHVIRDMQQYILL 242 (978)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~--~i~~~-~~~~~--~i~l~~~~~~~~~~Di~~yi~~ 242 (978)
.+.. ....|.+++.........++.+|++++.... .+... .+.+. .+.+...+ .+++..++..
T Consensus 137 l~~~--------~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~----~~~~~~~l~~ 204 (389)
T 1fnn_A 137 LAPD--------ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT----KDQIFDILLD 204 (389)
T ss_dssp SCHH--------HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB----HHHHHHHHHH
T ss_pred cchH--------HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC----HHHHHHHHHH
Confidence 7422 1223333332111000135677777765420 11111 11111 35665443 3688888888
Q ss_pred HhcCchHHHhhcCcChHHHHHHHHhhc---------hhhHHHHHHHHhhh
Q psy9384 243 RLASEESLRVHMNRDTAEMLNQLHIKS---------NGCFLYLERVLDGI 283 (978)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~i~~~l~~~a---------~g~flw~~~~~~~l 283 (978)
++.... ......++..+.+.+.+ .|.+..+.-.++..
T Consensus 205 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 205 RAKAGL----AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHHHB----CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhhc----CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 775210 01234456778888888 79887776666554
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.39 E-value=1.4e-06 Score=95.58 Aligned_cols=220 Identities=11% Similarity=0.078 Sum_probs=120.0
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhh-ccceeeeccccCCCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLR-KKLLAYHFCQSYDLA 88 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~-~~~~~~ff~~~~~~~ 88 (978)
..|.||+-.++.+.+|+...- .....+.+.|+|+||+|||+|+..+...+.. ..+ ...+.|+.|..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~-------~~~~~~~~~~i~~~~---- 86 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSKLHK-------KFLGKFKHVYINTRQ---- 86 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHHHHH-------HTCSSCEEEEEEHHH----
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-------HhcCCceEEEEECCC----
Confidence 679999999999999887410 1124568999999999999999999854321 000 23344444432
Q ss_pred ccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 89 TFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 89 ~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
..++..++..++.+|....+. .. .+. ..+.+.+...+.. ...+.++|||-+|..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~---------~~-------------~~~-~~~~~~l~~~l~~---~~~~~vlilDE~~~l 140 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPF---------TG-------------LSI-AELYRRLVKAVRD---YGSQVVIVLDEIDAF 140 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCS---------SS-------------CCH-HHHHHHHHHHHHT---CCSCEEEEEETHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCC---------CC-------------CCH-HHHHHHHHHHHhc---cCCeEEEEEcChhhh
Confidence 225556666666655322110 00 001 1222222222322 244789999999888
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc--cchhh-cccCc--cccccccccchhhhhHHHHHHHHH
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS--KSIKK-MFLGF--HKLSLDDLRKSHVIRDMQQYILLR 243 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~--~~i~~-~~~~~--~~i~l~~~~~~~~~~Di~~yi~~~ 243 (978)
.... ..+.+..+.+..... ...++.+|++++... ..+.. ..+.+ ..+.+...+ .+|+..++..+
T Consensus 141 ~~~~----~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~----~~~~~~il~~~ 209 (386)
T 2qby_A 141 VKKY----NDDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYN----AEELEDILTKR 209 (386)
T ss_dssp HHSS----CSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCC----HHHHHHHHHHH
T ss_pred hccC----cCHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCC----HHHHHHHHHHH
Confidence 6421 123333444433321 134567777776542 11111 11122 356665444 37888888877
Q ss_pred hcCchHHHhhcCcChHHHHHHHHhhch---hhHHHHHHHHhhh
Q psy9384 244 LASEESLRVHMNRDTAEMLNQLHIKSN---GCFLYLERVLDGI 283 (978)
Q Consensus 244 l~~~~~~~~~~~~~~~~i~~~l~~~a~---g~flw~~~~~~~l 283 (978)
+... ........++.+.+.+.+. |.+..+.-.++..
T Consensus 210 ~~~~----~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 210 AQMA----FKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS 248 (386)
T ss_dssp HHHH----BCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHhh----ccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6411 0112344566777777777 8887665555544
No 126
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.39 E-value=1.5e-06 Score=95.22 Aligned_cols=220 Identities=14% Similarity=0.080 Sum_probs=117.5
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.||+-.++++.+|+..-. ..+..+.++|+|+||+|||+|+..+...+....... ...+...+.|.-|. ..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~-~~~~~~~~~~i~~~----~~ 92 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKED-EEYKDVKQAYVNCR----EV 92 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHS-SSSTTCEEEEEEHH----HH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhh-cCCCCceEEEEECc----cC
Confidence 569999998888776665410 112456899999999999999999985542100000 00002223333322 22
Q ss_pred c-CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 90 F-SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 90 ~-~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
. ++..+++.++.+|....+.. .. .+. ..+.+.+...+.. .+. +||||-+|..
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~--------~~-------------~~~-~~~~~~l~~~l~~----~~~-vlilDEi~~l 145 (384)
T 2qby_B 93 GGTPQAVLSSLAGKLTGFSVPK--------HG-------------INL-GEYIDKIKNGTRN----IRA-IIYLDEVDTL 145 (384)
T ss_dssp CSCHHHHHHHHHHHHHCSCCCS--------SS-------------SCT-HHHHHHHHHHHSS----SCE-EEEEETTHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCCC--------CC-------------CCH-HHHHHHHHHHhcc----CCC-EEEEECHHHh
Confidence 3 67788888888886432210 00 000 1111112222222 223 9999999988
Q ss_pred cccCCCcCCCcchhh-HHHHHHhccCCCCCceeeeeeecccc--cchhhcc-cC-ccccccccccchhhhhHHHHHHHHH
Q psy9384 169 HVTNKKIYSDKATCS-IADLLARNHHLFPPWLFLFCTVRRQS--KSIKKMF-LG-FHKLSLDDLRKSHVIRDMQQYILLR 243 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~~~~sr~~~--~~i~~~~-~~-~~~i~l~~~~~~~~~~Di~~yi~~~ 243 (978)
.... .. .. +..++... .++.+|++++... ..+...+ +. ...+.+...+ .+|+..++..+
T Consensus 146 ~~~~----~~---~~~l~~l~~~~-----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~----~~~~~~il~~~ 209 (384)
T 2qby_B 146 VKRR----GG---DIVLYQLLRSD-----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYD----AEQLKFILSKY 209 (384)
T ss_dssp HHST----TS---HHHHHHHHTSS-----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCC----HHHHHHHHHHH
T ss_pred ccCC----CC---ceeHHHHhcCC-----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCC----HHHHHHHHHHH
Confidence 6421 01 13 33333321 4678888887652 1122111 11 1256665443 47888888887
Q ss_pred hcCchHHHhhcCcChHHHHHHHHhhch---hhHHHHHHHHhhh
Q psy9384 244 LASEESLRVHMNRDTAEMLNQLHIKSN---GCFLYLERVLDGI 283 (978)
Q Consensus 244 l~~~~~~~~~~~~~~~~i~~~l~~~a~---g~flw~~~~~~~l 283 (978)
+... +. .....++..+.+.+.+. |....+.-.++..
T Consensus 210 ~~~~--~~--~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 210 AEYG--LI--KGTYDDEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp HHHT--SC--TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHhh--cc--cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 7521 00 11233456677777777 8877666555554
No 127
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.29 E-value=1.7e-06 Score=92.03 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=107.5
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.|++-..+.+.+|+... ..+.+.|+|+||+|||+++..+...+.... ....+.++-+. ...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-------~~~~~~~~~~~--~~~- 80 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGEN-------WRDNFIEMNAS--DER- 80 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC-------HHHHCEEEETT--STT-
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc-------ccCCeEEEeCc--ccc-
Confidence 45788888888999999863 222389999999999999999986542110 01112222221 100
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.. ..++.++.++... ......++.++|||-.|...
T Consensus 81 -~~-~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~vliiDe~~~l~ 115 (319)
T 2chq_A 81 -GI-DVVRHKIKEFART-------------------------------------------APIGGAPFKIIFLDEADALT 115 (319)
T ss_dssp -CT-TTSSHHHHHHHHS-------------------------------------------CCSSSCCCEEEEEETGGGSC
T ss_pred -Ch-HHHHHHHHHHHhc-------------------------------------------CCCCCCCceEEEEeCCCcCC
Confidence 00 0001111111100 00011345789999888876
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES 249 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~ 249 (978)
... .. .|.+++ ...|+++.+|+++.+...-.....+.+..+.+...+ .+++..++...+...
T Consensus 116 ~~~----~~----~L~~~l----e~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~----~~~~~~~l~~~~~~~-- 177 (319)
T 2chq_A 116 ADA----QA----ALRRTM----EMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP----KEAMKKRLLEICEKE-- 177 (319)
T ss_dssp HHH----HH----TTGGGT----SSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC----HHHHHHHHHHHHHTT--
T ss_pred HHH----HH----HHHHHH----HhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC----HHHHHHHHHHHHHHc--
Confidence 321 11 122222 234567778887766543223333344556665443 478888888776532
Q ss_pred HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.....++..+.|.+.++|....+.-.++.+.
T Consensus 178 ----~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~ 208 (319)
T 2chq_A 178 ----GVKITEDGLEALIYISGGDFRKAINALQGAA 208 (319)
T ss_dssp ----CCCBCHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223456778888999999988877776654
No 128
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.28 E-value=8.6e-06 Score=88.74 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=113.3
Q ss_pred CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCC
Q psy9384 8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDL 87 (978)
Q Consensus 8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~ 87 (978)
.-..|.||+-..+.+..|+...+ ....++|+|+||+|||+++..+...+.... ......+..|.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~-------~~~~~~~~~~~---- 77 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCET-------GITATPCGVCD---- 77 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-------CSCSSCCSSSH----
T ss_pred chhhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-------CCCCCCCcccH----
Confidence 33568999999999999998642 345788999999999999999985543210 00001111110
Q ss_pred CccCHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384 88 ATFSVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID 166 (978)
Q Consensus 88 ~~~~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD 166 (978)
. +..+.. ..+.+.. + .. . . ..... .+..++.. +.......++.++|||-+|
T Consensus 78 ------~-----~~~~~~~~~~~~~~----~-~~-~--~----~~~~~----~~~~l~~~-~~~~~~~~~~~vliiDe~~ 129 (373)
T 1jr3_A 78 ------N-----CREIEQGRFVDLIE----I-DA-A--S----RTKVE----DTRDLLDN-VQYAPARGRFKVYLIDEVH 129 (373)
T ss_dssp ------H-----HHHHHTSCCSSCEE----E-ET-T--C----SCCSS----CHHHHHHH-TTSCCSSSSSEEEEEECGG
T ss_pred ------H-----HHHHhccCCCceEE----e-cc-c--c----cCCHH----HHHHHHHH-HhhccccCCeEEEEEECcc
Confidence 0 111111 1111110 0 00 0 0 00001 12222222 1122223456789999888
Q ss_pred cccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcC
Q psy9384 167 ETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLAS 246 (978)
Q Consensus 167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~ 246 (978)
..... ....|.+++. ..|.++.+|+++...........+.+..+.+...+ .+++..++..++..
T Consensus 130 ~l~~~--------~~~~Ll~~le----~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~----~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 130 MLSRH--------SFNALLKTLE----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD----VEQIRHQLEHILNE 193 (373)
T ss_dssp GSCHH--------HHHHHHHHHH----SCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHH
T ss_pred hhcHH--------HHHHHHHHHh----cCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCC----HHHHHHHHHHHHHH
Confidence 87532 1233444444 33556777777765432222333344556665443 47888888877652
Q ss_pred chHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 247 EESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
. ......+..+.+.+.++|....+.-.++.+
T Consensus 194 ~------~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~ 224 (373)
T 1jr3_A 194 E------HIAHEPRALQLLARAAEGSLRDALSLTDQA 224 (373)
T ss_dssp H------TCCBCHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred c------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1 122334567888899999988777666554
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=3.1e-06 Score=90.35 Aligned_cols=194 Identities=18% Similarity=0.174 Sum_probs=108.0
Q ss_pred CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCC
Q psy9384 8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDL 87 (978)
Q Consensus 8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~ 87 (978)
.-..|.|++-..+.+..|+... ..+.++|+|+||+|||+++..+...+... .....++..+..+
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~---------~~~~~~~~~~~~~- 86 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGE---------NWRHNFLELNASD- 86 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGG---------GHHHHEEEEETTC-
T ss_pred CHHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCC---------cccCceEEeeccc-
Confidence 3356889999999999999974 22348999999999999999998554210 1011111111110
Q ss_pred CccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc
Q psy9384 88 ATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE 167 (978)
Q Consensus 88 ~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE 167 (978)
. .....++..+.++... .++. ..++.++|||.+|.
T Consensus 87 -~-~~~~~~~~~~~~~~~~---------------------------------------~~~~----~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 87 -E-RGINVIREKVKEFART---------------------------------------KPIG----GASFKIIFLDEADA 121 (327)
T ss_dssp -H-HHHHTTHHHHHHHHHS---------------------------------------CCGG----GCSCEEEEEETGGG
T ss_pred -c-CchHHHHHHHHHHHhh---------------------------------------CCcC----CCCCeEEEEeCCCc
Confidence 0 0000111111111000 0010 13457899998888
Q ss_pred ccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384 168 THVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
.... ....|.+++.. .+.++++++++...........+.+..+.+...+ .+|+..++...+...
T Consensus 122 l~~~--------~~~~L~~~le~----~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~----~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 122 LTQD--------AQQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR----DEDIAKRLRYIAENE 185 (327)
T ss_dssp SCHH--------HHHHHHHHHHH----TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC----HHHHHHHHHHHHHTT
T ss_pred CCHH--------HHHHHHHHHHh----cCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC----HHHHHHHHHHHHHhc
Confidence 7532 12344455543 2446777777766543222222334455654433 478888888766532
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
. ....++..+.+++.++|...-+.-.++.+.
T Consensus 186 ~------~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 186 G------LELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp T------CEECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C------CCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 1 123356678888899999887776666554
No 130
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.22 E-value=9.5e-06 Score=104.17 Aligned_cols=213 Identities=16% Similarity=0.134 Sum_probs=122.2
Q ss_pred CCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecccc
Q psy9384 5 TPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQS 84 (978)
Q Consensus 5 ~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~ 84 (978)
-|-+...|+||+-.++++.++|... .+..+++.|+|++|.|||+|+..++..... . . ....-..||..-
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~----~-~--~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSL----L-E--GCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHH----H-T--TTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhH----H-H--hhCCCeEEEEEE
Confidence 4556678999999999999999652 235688999999999999999999855210 0 0 001111112222
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEec
Q psy9384 85 YDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDS 164 (978)
Q Consensus 85 ~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDa 164 (978)
...........++.++.+|........ . .....+.+...+...+.. ..+++.||+|.
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~-------------~~~~~~~~~~~l~~~l~~---~~~~~LlvlDd 244 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQ-------R-------------LPLNIEEAKDRLRVLMLR---KHPRSLLILDD 244 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCS-------S-------------CCSSHHHHHHHHHHHTSS---SSCSCEEEEES
T ss_pred CCcCchHHHHHHHHHHHHhhhhccccc-------C-------------CCCCHHHHHHHHHHHHhc---cCCCEEEEEec
Confidence 222334455567777777765421100 0 000112333333333322 24589999999
Q ss_pred cccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchh-hcccCcccccccc-ccchhhhhHHHHHHHH
Q psy9384 165 IDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-KMFLGFHKLSLDD-LRKSHVIRDMQQYILL 242 (978)
Q Consensus 165 LDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-~~~~~~~~i~l~~-~~~~~~~~Di~~yi~~ 242 (978)
+++.. .+. .++++.++|+|||... +. ........+.+.. ... ++-..++..
T Consensus 245 ~~~~~-------------~~~--------~~~~~~~ilvTtR~~~--~~~~~~~~~~~~~~~~~l~~----~~a~~l~~~ 297 (1249)
T 3sfz_A 245 VWDPW-------------VLK--------AFDNQCQILLTTRDKS--VTDSVMGPKHVVPVESGLGR----EKGLEILSL 297 (1249)
T ss_dssp CCCHH-------------HHT--------TTCSSCEEEEEESSTT--TTTTCCSCBCCEECCSSCCH----HHHHHHHHH
T ss_pred CCCHH-------------HHH--------hhcCCCEEEEEcCCHH--HHHhhcCCceEEEecCCCCH----HHHHHHHHH
Confidence 98643 111 2244568999998764 33 2233333444432 232 333334433
Q ss_pred HhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhc
Q psy9384 243 RLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISN 285 (978)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~ 285 (978)
+... ......++..+|+++.+|.+|-++++-..|..
T Consensus 298 ~~~~-------~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~ 333 (1249)
T 3sfz_A 298 FVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRD 333 (1249)
T ss_dssp HHTS-------CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hhCC-------ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 3321 12233456889999999999999988888864
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.20 E-value=9.3e-06 Score=78.97 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=39.5
Q ss_pred CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.-..|.||+-.++++.+|+... ..+.++|+|+||+|||+|+..+...+
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999899999998763 44668999999999999999998554
No 132
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.19 E-value=1.5e-05 Score=84.64 Aligned_cols=193 Identities=16% Similarity=0.136 Sum_probs=105.9
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..|.|++-..+.+.+|+.... ..+++.++|+||+|||+++..+...+. ..+++.+..+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~--------------~~~~~i~~~~~-- 84 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVN--------------ADMMFVNGSDC-- 84 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTT--------------EEEEEEETTTC--
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhC--------------CCEEEEccccc--
Confidence 457888888889999999632 446788889999999999999975431 22333332221
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
. ...++.++.+.+.. .......-+++||-+|...
T Consensus 85 -~-~~~i~~~~~~~~~~--------------------------------------------~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 85 -K-IDFVRGPLTNFASA--------------------------------------------ASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp -C-HHHHHTHHHHHHHB--------------------------------------------CCCSSCEEEEEEESCCCGG
T ss_pred -C-HHHHHHHHHHHHhh--------------------------------------------cccCCCCeEEEEECCcccC
Confidence 1 23333333332221 1111245689999888875
Q ss_pred -ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 170 -VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 170 -~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
.+ ....|.+++... +.++.+|+++.+...-.....+.+..+.+...+.++..+.++.++.. +...
T Consensus 119 ~~~--------~~~~L~~~le~~----~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~-l~~~- 184 (324)
T 3u61_B 119 LAE--------SQRHLRSFMEAY----SSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRR-LTEI- 184 (324)
T ss_dssp GHH--------HHHHHHHHHHHH----GGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHH-HHHH-
T ss_pred cHH--------HHHHHHHHHHhC----CCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH-HHHH-
Confidence 32 123455555433 34567888777654322222233445666544433333333443332 2111
Q ss_pred HHHhhcCcChH-HHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 249 SLRVHMNRDTA-EMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 249 ~~~~~~~~~~~-~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.........+ +..+.+++.++|...-+...++.+.
T Consensus 185 -~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 185 -CKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp -HHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred -HHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 1111122233 7778888888888766655555554
No 133
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.1e-05 Score=91.31 Aligned_cols=207 Identities=13% Similarity=0.113 Sum_probs=107.8
Q ss_pred CCcccccccchHHHHHHHhcCC-----CC------CCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccce
Q psy9384 9 SKKFFCREWAFVKLVHCLESKT-----NS------KPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLL 77 (978)
Q Consensus 9 ~~~f~~r~w~~~~~~~wl~~~~-----~~------~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~ 77 (978)
-..+.|++-..+++.+|+..-. .. ..+..+.++|+|+||+|||+++..+...+. .
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--------------~ 103 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--------------Y 103 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--------------C
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--------------C
Confidence 3467888888888989987510 00 001346899999999999999999985541 1
Q ss_pred eeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCc
Q psy9384 78 AYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTS 157 (978)
Q Consensus 78 ~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 157 (978)
.+++.+.. ...+. .++...+....... ..... +............+
T Consensus 104 ~~i~in~s--~~~~~-~~~~~~i~~~~~~~--------------~~~~~-----------------~~~~~~~~~~~~~~ 149 (516)
T 1sxj_A 104 DILEQNAS--DVRSK-TLLNAGVKNALDNM--------------SVVGY-----------------FKHNEEAQNLNGKH 149 (516)
T ss_dssp EEEEECTT--SCCCH-HHHHHTGGGGTTBC--------------CSTTT-----------------TTC----CCSSTTS
T ss_pred CEEEEeCC--CcchH-HHHHHHHHHHhccc--------------cHHHH-----------------HhhhhhhhhccCCC
Confidence 22222221 11221 22222222111110 00000 00000001123456
Q ss_pred EEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeec-ccccchhhcccCccccccccccchhhhhHH
Q psy9384 158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVR-RQSKSIKKMFLGFHKLSLDDLRKSHVIRDM 236 (978)
Q Consensus 158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr-~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di 236 (978)
.+||||-+|..... ....+..|.+++.... ..+++++. +..+.++...+....+.+...+ .+++
T Consensus 150 ~vliIDEid~l~~~-----~~~~l~~L~~~l~~~~------~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~----~~~~ 214 (516)
T 1sxj_A 150 FVIIMDEVDGMSGG-----DRGGVGQLAQFCRKTS------TPLILICNERNLPKMRPFDRVCLDIQFRRPD----ANSI 214 (516)
T ss_dssp EEEEECSGGGCCTT-----STTHHHHHHHHHHHCS------SCEEEEESCTTSSTTGGGTTTSEEEECCCCC----HHHH
T ss_pred eEEEEECCCccchh-----hHHHHHHHHHHHHhcC------CCEEEEEcCCCCccchhhHhceEEEEeCCCC----HHHH
Confidence 89999999988643 2233455666665431 23444443 3333344433334456664433 3566
Q ss_pred HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
..++....... .....++..+.|++.+.|...-+.-.++.+.
T Consensus 215 ~~~L~~i~~~~------~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 215 KSRLMTIAIRE------KFKLDPNVIDRLIQTTRGDIRQVINLLSTIS 256 (516)
T ss_dssp HHHHHHHHHHH------TCCCCTTHHHHHHHHTTTCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHc------CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66665444311 1123345678888999999887777766654
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.05 E-value=1.3e-05 Score=81.27 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=33.8
Q ss_pred Ccccccc---cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCRE---WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~---w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.|.|++ .+++.+..|+..+ ..+.++|+|+||+|||+|+..+...+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4566643 4556678887753 45689999999999999999998543
No 135
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.02 E-value=7.8e-06 Score=84.42 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=88.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS 115 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~ 115 (978)
.++-++|+|+||+|||+++..++..+...... .. -..+.|.+.+ -....++..+++.|+.||......
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~--~~--~~~~~~v~IN--c~~~~t~~~~~~~I~~~L~g~~~~------ 111 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSAR--KE--LPIFDYIHID--ALELAGMDALYEKIWFAISKENLC------ 111 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTT--TS--SCCEEEEEEE--TTCCC--HHHHHHHHHHHSCCC--------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhh--cc--CCceEEEEEe--ccccCCHHHHHHHHHHHhcCCCCC------
Confidence 56678999999999999999999776431100 00 0123333332 234457788999999999643111
Q ss_pred hhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCC
Q psy9384 116 TIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLF 195 (978)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 195 (978)
. ......+.++|..... ....++++++|-+|-.. ..+ .|..+++-. ..-
T Consensus 112 ---~--------------~~~~~~L~~~f~~~~~---~~~~~~ii~lDE~d~l~-------~q~---~L~~l~~~~-~~~ 160 (318)
T 3te6_A 112 ---G--------------DISLEALNFYITNVPK---AKKRKTLILIQNPENLL-------SEK---ILQYFEKWI-SSK 160 (318)
T ss_dssp ---C--------------CCCHHHHHHHHHHSCG---GGSCEEEEEEECCSSSC-------CTH---HHHHHHHHH-HCS
T ss_pred ---c--------------hHHHHHHHHHHHHhhh---ccCCceEEEEecHHHhh-------cch---HHHHHHhcc-ccc
Confidence 0 0011233444432211 12456899999888875 122 333444311 111
Q ss_pred CCceeeeeeeccc-ccc--hhhcc-cCc--cccccccccchhhhhHHHHHHHHHhcC
Q psy9384 196 PPWLFLFCTVRRQ-SKS--IKKMF-LGF--HKLSLDDLRKSHVIRDMQQYILLRLAS 246 (978)
Q Consensus 196 ~~~~~~~~~sr~~-~~~--i~~~~-~~~--~~i~l~~~~~~~~~~Di~~yi~~~l~~ 246 (978)
.+.+.+|+++... .+. +..++ +.+ ..|.+..++. ++|..++..|+..
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~----~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDK----NELQQMIITRLKS 213 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCH----HHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCH----HHHHHHHHHHHHh
Confidence 2345666666543 221 22111 111 3466655554 8899999999874
No 136
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.00 E-value=4.4e-05 Score=83.88 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=104.2
Q ss_pred Ccccccccch---HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384 10 KKFFCREWAF---VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD 86 (978)
Q Consensus 10 ~~f~~r~w~~---~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~ 86 (978)
..|+|.+-++ ..+..++... ....+.|+|+||+|||+|+..+...+.. .|+.++...
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~~~--------------~f~~l~a~~ 85 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYANA--------------DVERISAVT 85 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHTTC--------------EEEEEETTT
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHhCC--------------CeEEEEecc
Confidence 4577888777 5678888864 2256899999999999999999855421 112212111
Q ss_pred CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384 87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID 166 (978)
Q Consensus 87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD 166 (978)
. .. .-++.++.+. ..... ...+.+++||-+|
T Consensus 86 ~---~~-~~ir~~~~~a----------------------------------------~~~~~-----~~~~~iLfIDEI~ 116 (447)
T 3pvs_A 86 S---GV-KEIREAIERA----------------------------------------RQNRN-----AGRRTILFVDEVH 116 (447)
T ss_dssp C---CH-HHHHHHHHHH----------------------------------------HHHHH-----TTCCEEEEEETTT
T ss_pred C---CH-HHHHHHHHHH----------------------------------------HHhhh-----cCCCcEEEEeChh
Confidence 0 11 1111111100 00000 1345799999999
Q ss_pred cccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc-cchh-hcccCccccccccccchhhhhHHHHHHHHHh
Q psy9384 167 ETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS-KSIK-KMFLGFHKLSLDDLRKSHVIRDMQQYILLRL 244 (978)
Q Consensus 167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~-~~i~-~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l 244 (978)
...... +..++..+.+ ..+.+|.++.... ..+. ..++.+..+.+...+ .+|+..++...+
T Consensus 117 ~l~~~~----q~~LL~~le~----------~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~----~edi~~il~~~l 178 (447)
T 3pvs_A 117 RFNKSQ----QDAFLPHIED----------GTITFIGATTENPSFELNSALLSRARVYLLKSLS----TEDIEQVLTQAM 178 (447)
T ss_dssp CC----------CCHHHHHT----------TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCC----HHHHHHHHHHHH
T ss_pred hhCHHH----HHHHHHHHhc----------CceEEEecCCCCcccccCHHHhCceeEEeeCCcC----HHHHHHHHHHHH
Confidence 886432 3334444332 1345555553322 2232 334445556665443 488999998888
Q ss_pred cCch-HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 245 ASEE-SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 245 ~~~~-~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.... .+........++..+.|++.+.|...-+.-.++.+.
T Consensus 179 ~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 179 EDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMA 219 (447)
T ss_dssp HCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 7532 111122234567888899999999887777777664
No 137
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=3.5e-05 Score=83.10 Aligned_cols=203 Identities=14% Similarity=0.091 Sum_probs=107.3
Q ss_pred CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCC
Q psy9384 9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLA 88 (978)
Q Consensus 9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~ 88 (978)
-..+.|++-+.+.+..|+... ..+.++|+|+||+|||+++..+...+..+ ......+.+. +..+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~------~~~~~~~~~~--~~~~-- 99 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGP------DLMKSRILEL--NASD-- 99 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHH------HHHTTSEEEE--CSSS--
T ss_pred HHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCC------cccccceEEE--cccc--
Confidence 356889999999999999863 11238999999999999999998554210 0011112222 2111
Q ss_pred ccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384 89 TFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET 168 (978)
Q Consensus 89 ~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~ 168 (978)
. .....++..+......... . .. .. .. ........-+++||-+|..
T Consensus 100 ~-~~~~~~~~~~~~~~~~~~~----------~-----~~------~~----~~--------~~~~~~~~~vliiDE~~~l 145 (353)
T 1sxj_D 100 E-RGISIVREKVKNFARLTVS----------K-----PS------KH----DL--------ENYPCPPYKIIILDEADSM 145 (353)
T ss_dssp C-CCHHHHTTHHHHHHHSCCC----------C-----CC------TT----HH--------HHSCCCSCEEEEETTGGGS
T ss_pred c-cchHHHHHHHHHHhhhccc----------c-----cc------hh----hc--------ccCCCCCceEEEEECCCcc
Confidence 1 1122233322222211000 0 00 00 00 0001123468889988887
Q ss_pred cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384 169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE 248 (978)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~ 248 (978)
.... ...|.+++... +...++++++...........+.+..+.+.... .+++..++..++...
T Consensus 146 ~~~~--------~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~----~~~~~~~l~~~~~~~- 208 (353)
T 1sxj_D 146 TADA--------QSALRRTMETY----SGVTRFCLICNYVTRIIDPLASQCSKFRFKALD----ASNAIDRLRFISEQE- 208 (353)
T ss_dssp CHHH--------HHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHHHSEEEECCCCC----HHHHHHHHHHHHHTT-
T ss_pred CHHH--------HHHHHHHHHhc----CCCceEEEEeCchhhCcchhhccCceEEeCCCC----HHHHHHHHHHHHHHh-
Confidence 5321 22344555432 335567776655443223323334455554433 367888887766521
Q ss_pred HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
.....++..+.+++.+.|...-+...++.+
T Consensus 209 -----~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~ 238 (353)
T 1sxj_D 209 -----NVKCDDGVLERILDISAGDLRRGITLLQSA 238 (353)
T ss_dssp -----TCCCCHHHHHHHHHHTSSCHHHHHHHHHHT
T ss_pred -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122445678888899999876655555443
No 138
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.96 E-value=0.00013 Score=79.04 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=35.0
Q ss_pred cccccccchHH---HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 11 KFFCREWAFVK---LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 11 ~f~~r~w~~~~---~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.|.|++-..+. +.+++... ....+.+.|+|+||+|||+++..+...+.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57888777654 45666542 11235789999999999999999986653
No 139
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.94 E-value=2.3e-05 Score=75.62 Aligned_cols=48 Identities=17% Similarity=0.425 Sum_probs=39.6
Q ss_pred CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.-..|.||+-.++.+.+++... ..+.++|+|+||+|||+|+..+...+
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999899999998763 44567999999999999999998654
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=6.7e-05 Score=80.86 Aligned_cols=107 Identities=8% Similarity=0.069 Sum_probs=63.4
Q ss_pred CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384 156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD 235 (978)
Q Consensus 156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D 235 (978)
++-++|||-.|..+... ...|.+++... +.+..+|++|......+....+.+..+++...+ .++
T Consensus 134 ~~~vlilDE~~~L~~~~--------~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~----~~~ 197 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDA--------QAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPS----DSE 197 (354)
T ss_dssp CCEEEEEECTTSSCHHH--------HHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCC----HHH
T ss_pred CCeEEEEeCccccCHHH--------HHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcC----HHH
Confidence 44588888877765321 22344555432 345677777755443233333444556665433 367
Q ss_pred HHHHHHHHhcCchHHHhhcCcCh-HHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 236 MQQYILLRLASEESLRVHMNRDT-AEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 236 i~~yi~~~l~~~~~~~~~~~~~~-~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
+..++...+... ..... ++..+.+++.++|...-+...++.+.
T Consensus 198 ~~~~l~~~~~~~------~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 198 ISTILSDVVTNE------RIQLETKDILKRIAQASNGNLRVSLLMLESMA 241 (354)
T ss_dssp HHHHHHHHHHHH------TCEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHc------CCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888887665421 11122 46678888999999888887777664
No 141
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=0.00011 Score=78.39 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=100.1
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS 91 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~ 91 (978)
+.|.+.+.+.+..|+... .-+-+.++|+||+|||+++..+...+... .....+...+..+ ...
T Consensus 27 ~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~~---------~~~~~~~~~~~~~--~~~ 89 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYGK---------NYSNMVLELNASD--DRG 89 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHTT---------SHHHHEEEECTTS--CCS
T ss_pred hcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcCC---------CccceEEEEcCcc--ccc
Confidence 456677778899999853 11128999999999999999998554221 0011111112111 111
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccccc
Q psy9384 92 VQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVT 171 (978)
Q Consensus 92 ~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~ 171 (978)
...+|.++.++..... .. ....-++|||-.|-....
T Consensus 90 -~~~ir~~i~~~~~~~~-----------------------------------------~~--~~~~~viiiDe~~~l~~~ 125 (340)
T 1sxj_C 90 -IDVVRNQIKDFASTRQ-----------------------------------------IF--SKGFKLIILDEADAMTNA 125 (340)
T ss_dssp -HHHHHTHHHHHHHBCC-----------------------------------------SS--SCSCEEEEETTGGGSCHH
T ss_pred -HHHHHHHHHHHHhhcc-----------------------------------------cC--CCCceEEEEeCCCCCCHH
Confidence 1112222222211000 00 112457788887776532
Q ss_pred CCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHH
Q psy9384 172 NKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLR 251 (978)
Q Consensus 172 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~ 251 (978)
. ...|.+++.. .|..+.+++++......+....+.+..+.+.... .+++..++...+...
T Consensus 126 ~--------~~~L~~~le~----~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~----~~~~~~~l~~~~~~~---- 185 (340)
T 1sxj_C 126 A--------QNALRRVIER----YTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLP----QEAIERRIANVLVHE---- 185 (340)
T ss_dssp H--------HHHHHHHHHH----TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHTT----
T ss_pred H--------HHHHHHHHhc----CCCCeEEEEEecCccccchhHHhhceeEeccCCC----HHHHHHHHHHHHHHc----
Confidence 1 2234444443 3445667777655433233333344455554433 367788877666421
Q ss_pred hhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384 252 VHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI 283 (978)
Q Consensus 252 ~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l 283 (978)
.-...++..+.+.+.++|...-+...++.+
T Consensus 186 --~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 186 --KLKLSPNAEKALIELSNGDMRRVLNVLQSC 215 (340)
T ss_dssp --TCCBCHHHHHHHHHHHTTCHHHHHHHTTTT
T ss_pred --CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112334567788889999987766665554
No 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.85 E-value=7.5e-05 Score=87.69 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=121.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
+..+||+-.++++.+|+...+ +.+++.|+|++|.|||+|+..+....+- +..-...+.+.-. + ..
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV------~~~Fd~gV~WVsV--s--~~ 192 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKV------QCKMDFKIFWLNL--K--NC 192 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHH------HHHHSSCEEEEEC--C--CS
T ss_pred CCCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHH------HHhCCCcEEEEEe--C--CC
Confidence 445999999999999998632 4689999999999999999999743110 0001112222222 1 22
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.++..+++.|+.+|....+.+... .-..... ....+.+...|...+... ..+++.||+|-+++.+
T Consensus 193 ~d~~~IL~~Ll~lL~~i~~~~~~~---~d~~~~i----------p~~leeL~e~Lr~lL~~l--~~KRvLLVLDDVwd~e 257 (1221)
T 1vt4_I 193 NSPETVLEMLQKLLYQIDPNWTSR---SDHSSNI----------KLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAK 257 (1221)
T ss_dssp SSHHHHHHHHHHHHHHHCSSSTTT---SCCCSSH----------HHHHHHHHHHHHHHHHHS--TTSSCEEEEESCCCHH
T ss_pred CCHHHHHHHHHHHHhhcCcccccc---cccccCC----------CCCHHHHHHHHHHHHHhh--cCCCEEEEEeCcChHH
Confidence 346777777777654322211000 0000000 001122222333333111 3578999999998843
Q ss_pred ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccc--cccchhhhhHHHHHHHHHhcCc
Q psy9384 170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLD--DLRKSHVIRDMQQYILLRLASE 247 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~--~~~~~~~~~Di~~yi~~~l~~~ 247 (978)
.+..+. ++.++|+|||.... . ..........++ +....-..+|-..++..++...
T Consensus 258 -------------qLe~f~--------pGSRILVTTRd~~V-a-~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~ 314 (1221)
T 1vt4_I 258 -------------AWNAFN--------LSCKILLTTRFKQV-T-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314 (1221)
T ss_dssp -------------HHHHHH--------SSCCEEEECSCSHH-H-HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC
T ss_pred -------------HHHhhC--------CCeEEEEeccChHH-H-HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC
Confidence 333321 34589999987653 2 111111122332 1000112356666666554321
Q ss_pred hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhccceeeccccc-cccchhHHHHHHHhhccc
Q psy9384 248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKD-IPGTLNGLYLWLSQRLLS 313 (978)
Q Consensus 248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~~~~~~~l~~-lp~~l~~~y~~~~~~~~~ 313 (978)
..++..++ .+|.+|-++++...|+........+.. -...+..+.++.+.++..
T Consensus 315 ----------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~ 368 (1221)
T 1vt4_I 315 ----------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368 (1221)
T ss_dssp ----------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCT
T ss_pred ----------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCH
Confidence 12223333 679999999998888754211111111 123455555555555543
No 143
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.76 E-value=0.00023 Score=75.99 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=37.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..|.|++-..+.+..|+..... .....+.++|+|+||+|||+|+..+...+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4588999888888888875200 01133468999999999999999997543
No 144
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.74 E-value=0.0004 Score=73.04 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++|+|+||+|||+|+..+...+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4678899999999999999998654
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.73 E-value=0.00027 Score=75.05 Aligned_cols=191 Identities=17% Similarity=0.113 Sum_probs=104.2
Q ss_pred CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384 7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD 86 (978)
Q Consensus 7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~ 86 (978)
..-..|.|++-..+.+.+|+..-.. .......+.|+|+||+|||+++..+...+ ...+.+..|...
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~------------~~~~~~~~~~~~- 74 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL------------GVNLRVTSGPAI- 74 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH------------TCCEEEECTTTC-
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh------------CCCEEEEecccc-
Confidence 3445689999888887777763100 00133568899999999999999997432 112222222111
Q ss_pred CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384 87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID 166 (978)
Q Consensus 87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD 166 (978)
.... .+...+.. .+ ....+++||-+|
T Consensus 75 ---~~~~---------------------------------------------~l~~~l~~---~~---~~~~~l~lDEi~ 100 (324)
T 1hqc_A 75 ---EKPG---------------------------------------------DLAAILAN---SL---EEGDILFIDEIH 100 (324)
T ss_dssp ---CSHH---------------------------------------------HHHHHHTT---TC---CTTCEEEETTTT
T ss_pred ---CChH---------------------------------------------HHHHHHHH---hc---cCCCEEEEECCc
Confidence 0000 00011110 01 234588899888
Q ss_pred cccccCCCcCCCcchhhHHHHHHhccCC--------------CCCceeeeeeecccccchhhc-ccCc-cccccccccch
Q psy9384 167 ETHVTNKKIYSDKATCSIADLLARNHHL--------------FPPWLFLFCTVRRQSKSIKKM-FLGF-HKLSLDDLRKS 230 (978)
Q Consensus 167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~~~sr~~~~~i~~~-~~~~-~~i~l~~~~~~ 230 (978)
+.... ....|.+++....-. .++++.+++++.+... +... ...+ ..+.+...+
T Consensus 101 ~l~~~--------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~-~~~~l~~R~~~~i~l~~~~-- 169 (324)
T 1hqc_A 101 RLSRQ--------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL-ITAPLLSRFGIVEHLEYYT-- 169 (324)
T ss_dssp SCCHH--------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSS-CSCSTTTTCSCEEECCCCC--
T ss_pred ccccc--------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCccc-CCHHHHhcccEEEecCCCC--
Confidence 87632 122344444432100 0124667777766542 3322 2233 245554333
Q ss_pred hhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 231 HVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 231 ~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
.+|+..++...+... ......+..+.|...+.|++..+.-.++.+.
T Consensus 170 --~~e~~~~l~~~~~~~------~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 170 --PEELAQGVMRDARLL------GVRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp --HHHHHHHHHHHHHTT------TCCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 367888887766532 1234456788889999999887777766654
No 146
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.71 E-value=0.00035 Score=74.04 Aligned_cols=101 Identities=10% Similarity=0.013 Sum_probs=58.3
Q ss_pred CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhh
Q psy9384 155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIR 234 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~ 234 (978)
.+.-++|||..|....+. ...|.+.+. .-|+++.+|+++..+..-+....+.+..+.+...+ .+
T Consensus 107 ~~~kvviIdead~l~~~a--------~naLLk~lE----ep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~----~~ 170 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAA--------ANALLKTLE----EPPAETWFFLATREPERLLATLRSRCRLHYLAPPP----EQ 170 (334)
T ss_dssp SSCEEEEESCGGGBCHHH--------HHHHHHHHT----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HH
T ss_pred CCcEEEEECchhhcCHHH--------HHHHHHHhc----CCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCC----HH
Confidence 345688899888876321 123444443 23456666666654432222333445556665433 47
Q ss_pred HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384 235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG 282 (978)
Q Consensus 235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~ 282 (978)
++..|+..+.. ..++..+.++..++|...-|...++.
T Consensus 171 ~~~~~L~~~~~-----------~~~~~~~~l~~~s~G~~r~a~~~l~~ 207 (334)
T 1a5t_A 171 YAVTWLSREVT-----------MSQDALLAALRLSAGSPGAALALFQG 207 (334)
T ss_dssp HHHHHHHHHCC-----------CCHHHHHHHHHHTTTCHHHHHHTTSS
T ss_pred HHHHHHHHhcC-----------CCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 88889887751 12344567788888888776555543
No 147
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.66 E-value=0.00066 Score=72.64 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=34.5
Q ss_pred CcccccccchHHHHHHHhc----CCCC--CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 10 KKFFCREWAFVKLVHCLES----KTNS--KPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~----~~~~--~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.|.+-..+.+.+++.. +.-. .....+.++|+|+||+|||+|+..+...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467777777777766642 0000 0113467899999999999999999744
No 148
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.64 E-value=0.00052 Score=72.39 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=32.0
Q ss_pred cccccccchHHHHHHHhcC----C--CCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 11 KFFCREWAFVKLVHCLESK----T--NSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~----~--~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.|.+-..+.+.+++..+ . .......+.++|+|+||+|||+|+..+...
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3556666666666665200 0 001113456899999999999999999743
No 149
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.60 E-value=0.00041 Score=70.97 Aligned_cols=210 Identities=13% Similarity=0.131 Sum_probs=102.2
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF 90 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~ 90 (978)
.|.|++-.+.++.+.+..- ......++|+|+||+|||+++..+...+.. ....+.+.-|..-
T Consensus 7 ~~ig~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKt~la~~i~~~~~~---------~~~~~~~v~~~~~----- 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHL----APLDKPVLIIGERGTGKELIASRLHYLSSR---------WQGPFISLNCAAL----- 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHH----TTSCSCEEEECCTTSCHHHHHHHHHHTSTT---------TTSCEEEEEGGGS-----
T ss_pred cceeCCHHHHHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHHHhcCc---------cCCCeEEEecCCC-----
Confidence 4677777666655554431 013356889999999999999999866532 1223444444421
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384 91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV 170 (978)
Q Consensus 91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~ 170 (978)
....+.+ .|....+. .+.... .. .. ..+ .. ...-+++||-+|....
T Consensus 69 -~~~~~~~---~l~g~~~~-------~~~g~~-~~-------~~---~~l--------~~----a~~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 69 -NENLLDS---ELFGHEAG-------AFTGAQ-KR-------HP---GRF--------ER----ADGGTLFLDELATAPM 114 (265)
T ss_dssp -CHHHHHH---HHHCCC-----------------C-------CC---CHH--------HH----TTTSEEEEESGGGSCH
T ss_pred -ChhHHHH---HhcCCccc-------cccccc-cc-------cc---chh--------hh----cCCcEEEEechHhcCH
Confidence 1122222 22222110 000000 00 00 001 01 1124889999998864
Q ss_pred cCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccch----------hhcccCccccccccccchhhh
Q psy9384 171 TNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSI----------KKMFLGFHKLSLDDLRKSHVI 233 (978)
Q Consensus 171 ~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i----------~~~~~~~~~i~l~~~~~~~~~ 233 (978)
+ ....|.+++.... ...+..+++|++|.+..... ..++.. -.+.+...+. ..
T Consensus 115 ~--------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~--R~ 183 (265)
T 2bjv_A 115 M--------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRE--RE 183 (265)
T ss_dssp H--------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGG--CH
T ss_pred H--------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhh--hh
Confidence 2 1223444554321 01234678888888754322 122211 1344433222 23
Q ss_pred hHHHHHHHHHhcCchHHHhhc--CcChHHHHHHHHhhc-hhhHHHHHHHHhhh
Q psy9384 234 RDMQQYILLRLASEESLRVHM--NRDTAEMLNQLHIKS-NGCFLYLERVLDGI 283 (978)
Q Consensus 234 ~Di~~yi~~~l~~~~~~~~~~--~~~~~~i~~~l~~~a-~g~flw~~~~~~~l 283 (978)
+||..++.+.+.......... ....++..+.|.... .|+..-+.-+++.+
T Consensus 184 ~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~ 236 (265)
T 2bjv_A 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 688888877766433222211 134456667776554 77777666666654
No 150
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.57 E-value=0.0052 Score=62.56 Aligned_cols=51 Identities=29% Similarity=0.334 Sum_probs=32.0
Q ss_pred CcccccccchHHHH---HHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 10 KKFFCREWAFVKLV---HCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 10 ~~f~~r~w~~~~~~---~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.|.+-+.+.++ .|+..+... .....+.++|+|+||+|||+++..+...
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34666666665443 444432100 0123456889999999999999999744
No 151
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.57 E-value=0.0012 Score=68.97 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=35.6
Q ss_pred CcccccccchHHHHHHHhcCCC------CCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTN------SKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~------~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.|.+-..+.+.+++..+.. ......+.++|+|+||+|||+++..+...+
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4567787777777777643100 001134678999999999999999998543
No 152
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.53 E-value=0.00026 Score=74.56 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=57.3
Q ss_pred EEEEEeccccccccCCC-cCCCcchhhHHHHHHhccCCCCCceeeeeeecccc--------cchhhcccCcccccccccc
Q psy9384 158 YFILVDSIDETHVTNKK-IYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS--------KSIKKMFLGFHKLSLDDLR 228 (978)
Q Consensus 158 ~~iviDaLDE~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~--------~~i~~~~~~~~~i~l~~~~ 228 (978)
-+++||-+|.......+ ....+....|.+++... +.++.+|+++.+.. +.+..+|. ..+.+...+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~ 205 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFFQSNPGFRSRIA--HHIEFPDYS 205 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHHHHSTTHHHHEE--EEEEECCCC
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHHhhCHHHHHhCC--eEEEcCCcC
Confidence 38999999977421100 11222344555555533 34667788775532 23444442 345554433
Q ss_pred chhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhh--------chhhHHHHHHHHhhhh
Q psy9384 229 KSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIK--------SNGCFLYLERVLDGIS 284 (978)
Q Consensus 229 ~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~--------a~g~flw~~~~~~~l~ 284 (978)
.+|+..++...+.... .....+..+.+.+. ..|+...+.-+++.+.
T Consensus 206 ----~~~~~~il~~~l~~~~------~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 206 ----DEELFEIAGHMLDDQN------YQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp ----HHHHHHHHHHHHHHTT------CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 3778888777666321 12223344444443 3366666666655543
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.51 E-value=0.00075 Score=73.35 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=33.7
Q ss_pred cccccccchHHHHHHHhcCCCC------CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNS------KPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~------~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.|++-..+.+.+++..+... .....+-++|+|+||+|||+|+..+...
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4667777777777776321000 0013467899999999999999999744
No 154
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0011 Score=71.42 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.++|+||||||.|++.+..+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999844
No 155
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.45 E-value=0.00081 Score=74.17 Aligned_cols=50 Identities=26% Similarity=0.216 Sum_probs=31.6
Q ss_pred ccccccchHHHHHHHhc----CCCC--CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 12 FFCREWAFVKLVHCLES----KTNS--KPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~----~~~~--~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.|.+-+.+.+.+++.. +... .....+.++|+|+||+|||+|+..+...+
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45555555566665521 0000 01134678899999999999999998554
No 156
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00092 Score=72.11 Aligned_cols=25 Identities=40% Similarity=0.671 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.|+|+||||||.|++.+..+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567889999999999999999844
No 157
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.43 E-value=0.0003 Score=64.07 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=33.6
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.|.|++-.++++.+++..- .....-++|+|+||+|||+++..+....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----SETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----TTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHH----hCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4678877777776666531 1133458899999999999999998654
No 158
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.40 E-value=0.0019 Score=68.82 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=31.8
Q ss_pred cccccccchHHHHHHHhcC----CC--CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 11 KFFCREWAFVKLVHCLESK----TN--SKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~----~~--~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.|.+-..+.+.+++..+ .. ......+-++|+|+||+|||+|+..+...
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 3566666666666665210 00 01112345788999999999999999844
No 159
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.39 E-value=0.00072 Score=70.09 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=34.5
Q ss_pred CcccccccchHHHHHHHhcCCCC-------CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNS-------KPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~-------~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.|.+-..+++.+++..+-.. .....+.++|+|+||+|||+|+..+...+
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34667777777666665431000 01144568999999999999999998554
No 160
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.38 E-value=0.0016 Score=68.93 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.....++..+ ....+.++|+|+||+|||+|+..+...+
T Consensus 24 ~~~~~~~~~~----~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 24 EVVKEALENL----GSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHTT----TTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCc----CCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4567777753 1134679999999999999999998543
No 161
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0013 Score=69.65 Aligned_cols=25 Identities=32% Similarity=0.683 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.++|+||||||.|++.+..+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4466889999999999999999843
No 162
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.35 E-value=0.001 Score=69.11 Aligned_cols=213 Identities=14% Similarity=0.136 Sum_probs=108.2
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT 89 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~ 89 (978)
..+.|++-.++++.+.+..- ......++|+|+||+|||+++..+...... ....+.+.-|..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~----a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~---------~~~~~v~v~~~~----- 63 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV----APSDATVLIHGDSGTGKELVARALHACSAR---------SDRPLVTLNCAA----- 63 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH----CSTTSCEEEESCTTSCHHHHHHHHHHHSSC---------SSSCCCEEECSS-----
T ss_pred CCcEECCHHHHHHHHHHHHH----hCCCCcEEEECCCCchHHHHHHHHHHhCcc---------cCCCeEEEeCCC-----
Confidence 35778877777665555541 113456889999999999999999854321 122233333331
Q ss_pred cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384 90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH 169 (978)
Q Consensus 90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~ 169 (978)
.+..++.+ .|....+.. +.... .. .. ..+. .. ..-+++||-+|+..
T Consensus 64 -~~~~l~~~---~lfg~~~g~-------~tg~~-~~-------~~---g~~~--------~a----~~g~L~LDEi~~l~ 109 (304)
T 1ojl_A 64 -LNESLLES---ELFGHEKGA-------FTGAD-KR-------RE---GRFV--------EA----DGGTLFLDEIGDIS 109 (304)
T ss_dssp -CCHHHHHH---HHTCCCSSC-------CC----CC-------CC---CHHH--------HH----TTSEEEEESCTTCC
T ss_pred -CChHHHHH---HhcCccccc-------cCchh-hh-------hc---CHHH--------hc----CCCEEEEeccccCC
Confidence 12233333 222221110 00000 00 00 0110 00 12378899999886
Q ss_pred ccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hccc-----C--ccccccccccchhhh
Q psy9384 170 VTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMFL-----G--FHKLSLDDLRKSHVI 233 (978)
Q Consensus 170 ~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~~-----~--~~~i~l~~~~~~~~~ 233 (978)
.. ....|.+++.... ...+..+++|++|.++..... ..|+ . .-.+.+.... +..
T Consensus 110 ~~--------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~--eR~ 179 (304)
T 1ojl_A 110 PL--------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLR--QRR 179 (304)
T ss_dssp HH--------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSG--GGG
T ss_pred HH--------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHH--HhH
Confidence 32 1223444444321 112356889999887643221 1121 1 1223443322 235
Q ss_pred hHHHHHHHHHhcCchHHHh-hcCcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384 234 RDMQQYILLRLASEESLRV-HMNRDTAEMLNQLHIKS-NGCFLYLERVLDGIS 284 (978)
Q Consensus 234 ~Di~~yi~~~l~~~~~~~~-~~~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~ 284 (978)
+||..++.+-+........ ......++..+.|...+ .|+..-+.-+++.+.
T Consensus 180 edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~ 232 (304)
T 1ojl_A 180 EDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAV 232 (304)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 7898888877764322211 12234567778888876 888877777766653
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.31 E-value=0.002 Score=70.94 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.....+...+ +....++|+|+||+|||+|+..+...+
T Consensus 118 ~~~~~~a~~~-----~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 118 HAALEVAKHP-----GRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHST-----TSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-----CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467777753 125679999999999999999998543
No 164
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.30 E-value=0.00089 Score=80.75 Aligned_cols=46 Identities=20% Similarity=0.409 Sum_probs=36.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..|+||+-.+.++.+++... ..+-++|+|+||+|||+|+..+...+
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45789998888888888753 33457899999999999999998543
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0025 Score=67.68 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.|+|+||||||.|+..+..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 4567899999999999999999844
No 166
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0013 Score=70.89 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.++|+||||||.|++.+..+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4567889999999999999999844
No 167
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.21 E-value=0.0023 Score=65.59 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.++|+|+||+|||+|+..+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567899999999999999999843
No 168
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0024 Score=68.62 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.++|+|+||||||.|+..+..+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4567889999999999999999844
No 169
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.11 E-value=0.0056 Score=63.64 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.++|+|+||+|||+|+..+...+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678999999999999999998543
No 170
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.99 E-value=0.0017 Score=68.32 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=34.4
Q ss_pred CcccccccchHHHHHHHhcCCC--CCCC-CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTN--SKPG-NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~--~~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+.|.+-..+.+...+..... ..+. ..+.++|+|+||+|||+++..+...+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3567887777766555543100 0111 23479999999999999999998554
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.90 E-value=0.0016 Score=63.38 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=30.2
Q ss_pred chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++...+|+.... ....++.++|+|+||+|||+|+..+...+
T Consensus 37 ~~~~~~~~~~~~~--~~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 37 AIRFAERFVAEYE--PGKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp HHHHHHHHHHHCC--SSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--hccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3455678887641 11122679999999999999999998554
No 172
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.79 E-value=0.0018 Score=73.33 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
....+.|.|+||+|||+|+..+...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999997443
No 173
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.71 E-value=0.0042 Score=68.88 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=32.1
Q ss_pred ccccccchHHHHHHHhcCCC-------CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 12 FFCREWAFVKLVHCLESKTN-------SKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~-------~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.|.+-..+++.+++...-. ......+-++|+|+||+|||+++..+...
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 56666666666666543100 00124456889999999999999999744
No 174
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.71 E-value=0.0033 Score=69.86 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=37.1
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..++||+-..+.+.+++... ..+-++|+|+||+|||+++..+...+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45889999999999998763 23446799999999999999998553
No 175
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.67 E-value=0.005 Score=64.57 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=32.1
Q ss_pred cccccccchHHHHHHHhcC--C-CC-----CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 11 KFFCREWAFVKLVHCLESK--T-NS-----KPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~--~-~~-----~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.|++-..+.+...+... + .. .....+-++|+|+||+|||+++..+...+
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567766666655544320 0 00 00123568899999999999999998543
No 176
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.64 E-value=0.0031 Score=64.46 Aligned_cols=51 Identities=27% Similarity=0.331 Sum_probs=31.7
Q ss_pred CcccccccchHHHHHHHh---cCCC---CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 10 KKFFCREWAFVKLVHCLE---SKTN---SKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~---~~~~---~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.|.+-..+.+.+++. .+.. ......+.++|+|+||+|||+|+..+...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 457788777765544433 1000 00002234779999999999999999843
No 177
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.44 E-value=0.0069 Score=62.55 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.+.|+|+||+|||+|+..+...+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999998543
No 178
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.42 E-value=0.057 Score=54.48 Aligned_cols=23 Identities=48% Similarity=0.768 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+-+.|+|+||+|||+|+..+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45789999999999999999743
No 179
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.41 E-value=0.0085 Score=68.99 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=34.8
Q ss_pred ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+.|.+.+++.+...+.. ...+.|.|+||+|||+|+..+...+.
T Consensus 43 i~G~~~~l~~l~~~i~~--------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQ--------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCSCHHHHHHHHHHHHT--------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred EECchhhHhhccccccC--------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 46777777777777774 25899999999999999999987664
No 180
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.40 E-value=0.0036 Score=65.08 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=30.1
Q ss_pred chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++...+|+... ..+....++|+|+||+|||+|+..+...+
T Consensus 136 ~~~~~~~~i~~~---~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 136 AFSAILDFVEQY---PSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHC---SCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344567888863 11124679999999999999999998543
No 181
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.30 E-value=0.0099 Score=57.59 Aligned_cols=27 Identities=37% Similarity=0.710 Sum_probs=23.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 34 PGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 34 ~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.++++|-|+|||||||+++.++++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999844
No 182
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.22 E-value=0.018 Score=67.18 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.+.|+|+||||||+|++.+...+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999998654
No 183
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.16 E-value=0.037 Score=65.92 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=36.1
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.||+-.++++.+++... ...-+.|+|+||+|||+++..+...+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 35788888888888888753 33457899999999999999998543
No 184
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.08 E-value=0.011 Score=60.29 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHhc
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.++..|+|+||+|||+|+..+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34668999999999999999973
No 185
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.03 E-value=0.0032 Score=59.80 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=32.0
Q ss_pred cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++..++...+|+++- ....+..++|+|+||+|||+|+..+...+
T Consensus 19 ~~~~~~~~~~~~~~~---~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNF---NPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSC---CGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555667777653 22245789999999999999999998543
No 186
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.03 E-value=0.0041 Score=58.61 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.++.|+.+- ...+.++++|+||+|||+++..++..+
T Consensus 46 ~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678898852 134569999999999999999998554
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.97 E-value=0.037 Score=60.71 Aligned_cols=22 Identities=41% Similarity=0.780 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhc
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
+-++|+|+||+|||+|+..+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3477999999999999999974
No 188
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.054 Score=55.88 Aligned_cols=36 Identities=19% Similarity=0.081 Sum_probs=27.8
Q ss_pred chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
+.+.++..++.. ....+.++|+||+|||+++..+..
T Consensus 5 ~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 5 QLETLKRIIEKS------EGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp HHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345567777753 246788999999999999999874
No 189
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.80 E-value=0.003 Score=57.14 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=30.0
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.|++-.++++.+.+..- .....-++|+|+||+|||+++..+...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~----~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAA----AKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHH----HTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHH----hCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45678877776655554431 002345789999999999999999744
No 190
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.78 E-value=0.0073 Score=59.99 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=28.5
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+..|++.. .+..+.+||+|+||+|||.++..++..
T Consensus 93 l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 68898862 234567999999999999999999843
No 191
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.70 E-value=0.019 Score=68.29 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=37.2
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.||+-..+++..++... ..+-++|+|+||+|||+++..+...+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45889999999999998864 22346799999999999999998554
No 192
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.65 E-value=0.1 Score=53.03 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.|+|+||||||+|++.+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999843
No 193
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.59 E-value=0.005 Score=58.28 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++||+|.|||||||++..+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998665
No 194
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.52 E-value=0.062 Score=52.01 Aligned_cols=27 Identities=33% Similarity=0.233 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446899999999999999999986554
No 195
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.33 E-value=0.037 Score=64.61 Aligned_cols=25 Identities=44% Similarity=0.659 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+-+.++|+||||||.|++.+..++
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh
Confidence 3457799999999999999998554
No 196
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.12 E-value=0.057 Score=64.18 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=31.1
Q ss_pred cccccccchHHHHHHHhcCCCC--CCC-CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNS--KPG-NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~--~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.|.+-..+.+.+.+...... .++ ..+.++|+|+||+|||.++..+...+
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555555554444432100 111 11259999999999999999998554
No 197
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.09 E-value=0.083 Score=52.80 Aligned_cols=27 Identities=30% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999985543
No 198
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.95 E-value=0.0076 Score=56.67 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+++|.|.|||||||++..+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999744
No 199
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.92 E-value=0.013 Score=56.52 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
...+++|.|++|||||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999973
No 200
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.90 E-value=0.01 Score=55.77 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+++|.|+|||||||+++.+...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999744
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.86 E-value=0.098 Score=62.10 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=34.3
Q ss_pred ccccccchHHHHHHHhcC----C---CCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 12 FFCREWAFVKLVHCLESK----T---NSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 12 f~~r~w~~~~~~~wl~~~----~---~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..|.+-..+++.+|+..+ . .........+.|+|+||||||+|+..+...+
T Consensus 206 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred hCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 567777777777777530 0 0011234568899999999999999997553
No 202
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.79 E-value=0.014 Score=55.11 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q psy9384 38 GGALIIGGPGSGKTTLCKEI 57 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~i 57 (978)
.+++|.|+|||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 203
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.79 E-value=0.0092 Score=55.78 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.++|+|.|||||||+++.+.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999744
No 204
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.79 E-value=0.015 Score=55.71 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+++|.|+||||||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999854
No 205
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.71 E-value=0.015 Score=55.08 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhc
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+++|.|.|||||||++..+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999974
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.70 E-value=0.013 Score=61.89 Aligned_cols=50 Identities=32% Similarity=0.337 Sum_probs=34.5
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..|.|++.+++.+..++..... .......+.|+|+||+|||||+..+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567888888877766653100 0012256899999999999999999844
No 207
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.61 E-value=0.011 Score=56.83 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+++|.|.|||||||++..+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999744
No 208
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.61 E-value=0.1 Score=57.64 Aligned_cols=22 Identities=41% Similarity=0.780 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
-+.|+|+||+|||+|+..+...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999844
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.60 E-value=0.075 Score=55.31 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=34.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQF 103 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL 103 (978)
.+.+..|.|.||+|||+++..++.+... ....+.||-+. .+...+..-++.+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g~~vl~~slE------~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD---------NDDVVNLHSLE------MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT---------TTCEEEEEESS------SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEECC------CCHHHHHHHHHHHH
Confidence 4568889999999999999998854321 12456655432 35556666655543
No 210
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.57 E-value=0.011 Score=56.19 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=17.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+++|+|.|||||||++..+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998554
No 211
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.57 E-value=0.1 Score=51.41 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 457899999999999999999875543
No 212
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.56 E-value=0.02 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
...+++|.|.|||||||+++.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34689999999999999999987
No 213
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.56 E-value=0.099 Score=51.15 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|||||||++.+.--+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987544
No 214
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.51 E-value=0.011 Score=56.18 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+++|+|.|||||||+++.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999743
No 215
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.47 E-value=0.021 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+++|.|.|||||||++..+.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999744
No 216
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.47 E-value=0.027 Score=54.31 Aligned_cols=44 Identities=23% Similarity=0.037 Sum_probs=32.0
Q ss_pred cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
|+-+++++-+++... ......++.|.|++||||||++..+...+
T Consensus 3 ~~~~~~~l~~~~~~~---~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAI---KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTS---CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334556677777653 22355689999999999999999998543
No 217
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.44 E-value=0.076 Score=55.22 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=44.1
Q ss_pred ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHH
Q psy9384 16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNF 95 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~ 95 (978)
.+=|..+.+.+.+ -..+.+..|.|.||+|||+++..++.+... .+..|+||-. . -+...+
T Consensus 30 ~TG~~~LD~~~gG-----l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~~Vl~fSl--E----ms~~ql 89 (338)
T 4a1f_A 30 PTGFVQLDNYTSG-----FNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DDRGVAVFSL--E----MSAEQL 89 (338)
T ss_dssp CCSCHHHHHHHCS-----BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTCEEEEEES--S----SCHHHH
T ss_pred cCCChHHHHHhcC-----CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeC--C----CCHHHH
Confidence 3445666666542 124568889999999999999999855321 2455665442 2 245666
Q ss_pred HHHHHHHHhc
Q psy9384 96 IQSLVEQFSS 105 (978)
Q Consensus 96 l~sl~~QL~~ 105 (978)
+.-++.+...
T Consensus 90 ~~Rlls~~~~ 99 (338)
T 4a1f_A 90 ALRALSDLTS 99 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 6666655543
No 218
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.42 E-value=0.011 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++|.|.|||||||++..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998554
No 219
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.42 E-value=0.084 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
-|-|.|+|||||||+++.+.+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999844
No 220
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.39 E-value=0.013 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+++|.|.|||||||++..+.+++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998543
No 221
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.35 E-value=0.16 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|||||||++.+.--+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45789999999999999999887544
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.33 E-value=0.018 Score=55.70 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+++|.|+||||||||+..+.+.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998665
No 223
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.32 E-value=0.016 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+++|.|.|||||||++..+.+.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999744
No 224
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.31 E-value=0.023 Score=55.04 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+.+|.|+|||||||++..+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998765
No 225
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.31 E-value=0.015 Score=56.10 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+++|.|.|||||||++..+.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999844
No 226
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.30 E-value=0.022 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++||.|.+||||||++..+...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998543
No 227
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.26 E-value=0.11 Score=53.04 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.|+|+||+|||+|+..+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999999844
No 228
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.25 E-value=0.015 Score=55.07 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+++|+|.|||||||++..+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999744
No 229
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.24 E-value=0.015 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.++|.|.|||||||++..+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999744
No 230
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.23 E-value=0.014 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+++|+|.|||||||++..+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999743
No 231
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.17 E-value=0.016 Score=56.71 Aligned_cols=26 Identities=27% Similarity=0.088 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+++|+|.|||||||++..+.+++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998554
No 232
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.13 E-value=0.022 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
....+.|.|++|+|||+|+..+...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998543
No 233
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.08 E-value=0.023 Score=54.99 Aligned_cols=26 Identities=35% Similarity=0.705 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+.+|.|.|||||||+++.+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44578999999999999999998543
No 234
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.06 E-value=0.015 Score=55.33 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+|.|.|||||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999743
No 235
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.05 E-value=0.016 Score=54.52 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+||.|.|||||||++..+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.02 E-value=0.019 Score=60.69 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=34.6
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.|++-+.+.+..++... +-++|+|+||+|||+|+..+...+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35678887777777776642 468999999999999999998554
No 237
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.01 E-value=0.018 Score=55.30 Aligned_cols=25 Identities=44% Similarity=0.825 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+++|.|.|||||||+++.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999744
No 238
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.00 E-value=0.03 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....+.|+|.|||||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999999744
No 239
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.98 E-value=0.018 Score=56.28 Aligned_cols=25 Identities=20% Similarity=-0.029 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+++|.|.|||||||++..+.+++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999986653
No 240
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.98 E-value=0.023 Score=58.25 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+++|.|.|||||||+++.+.+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999998543
No 241
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.93 E-value=0.018 Score=55.38 Aligned_cols=23 Identities=43% Similarity=0.765 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+|.|.|||||||++..+.+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999744
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.90 E-value=0.019 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++||.|.|||||||++..+...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 44678999999999999999998554
No 243
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.85 E-value=0.041 Score=60.89 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=33.7
Q ss_pred CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.++|++-+.+.....+.. ++-++|+|+||+|||+|+..+...+
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhc--------CCeeEeecCchHHHHHHHHHHHHHH
Confidence 3466777777766665553 2468899999999999999998655
No 244
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.81 E-value=0.025 Score=53.87 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+.+|.|.|||||||++..+...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998554
No 245
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.81 E-value=0.019 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.187 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++|+|.|||||||++..+.+++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998543
No 246
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.78 E-value=0.034 Score=53.93 Aligned_cols=26 Identities=35% Similarity=0.166 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+++|.|+|||||||++..+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45688999999999999999998664
No 247
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.76 E-value=0.16 Score=51.28 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|||||||++.+.--+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999997554
No 248
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.76 E-value=0.02 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+|+|.|||||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999743
No 249
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.74 E-value=0.022 Score=55.77 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+++|+|.|||||||++..+.+++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998554
No 250
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.73 E-value=0.023 Score=54.44 Aligned_cols=25 Identities=44% Similarity=0.796 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+++|.|.|||||||++..+.+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999743
No 251
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.71 E-value=0.023 Score=55.58 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++|+|+|||||||++..+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999997543
No 252
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.64 E-value=0.037 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+++|.|+|||||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999743
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.63 E-value=0.039 Score=52.05 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|++|||||||+..+...+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998544
No 254
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.61 E-value=0.024 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...++|.|.|||||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357888999999999999999854
No 255
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.59 E-value=0.023 Score=54.84 Aligned_cols=24 Identities=50% Similarity=0.786 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+|.|.|||||||+++.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999844
No 256
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.55 E-value=0.022 Score=55.81 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++|+|+|||||||++..+.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999744
No 257
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.54 E-value=0.022 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.091 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+|+|+|||||||++..+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.53 E-value=0.094 Score=63.13 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=32.5
Q ss_pred cccccccchHHHHHHHhcCCC--CCCC-CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 11 KFFCREWAFVKLVHCLESKTN--SKPG-NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~--~~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++|.+-..+.+...+..... ++++ ..+.++|+|+||+|||+++..+...+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 356776666665555543100 0111 12468899999999999999998554
No 259
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.53 E-value=0.14 Score=53.95 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 456899999999999999999985543
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.53 E-value=0.039 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|++||||||++..+...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34688999999999999999998765
No 261
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.50 E-value=0.025 Score=56.42 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....++|+|+|||||||+++.+.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999844
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.49 E-value=0.044 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|++|+|||||+..+...+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998665
No 263
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.43 E-value=0.04 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+++|+|.+||||||+++.+.+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999997543
No 264
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.42 E-value=0.03 Score=55.26 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+++|.|.|||||||++..+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998544
No 265
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.42 E-value=0.035 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+++|.|.|||||||++..+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999854
No 266
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.40 E-value=0.063 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.758 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+.+..|.|.||+|||+++-.++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 456888999999999999998763
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.31 E-value=0.036 Score=52.89 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhc
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+++|.|++|||||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999973
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.27 E-value=0.032 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+++|-|+|||||+|+++.++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999844
No 269
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.23 E-value=0.048 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.++.|.|++|||||||+..+...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999744
No 270
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.11 E-value=0.27 Score=52.01 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+.--+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 456899999999999999999985543
No 271
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.10 E-value=0.067 Score=54.67 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=30.0
Q ss_pred cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+++.+|... ..+...+..|.|++|||||||+..+...+
T Consensus 15 ~l~~~i~~~~~~----~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 15 FLDKYIPEWFET----GNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp HHHHHHHHHHTT----TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc----cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345566777543 22345678899999999999999988655
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.09 E-value=0.061 Score=52.17 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=27.6
Q ss_pred hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+++.+.+... ...+.++.|.|++|||||||++.+...+
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34454555431 2255689999999999999999997443
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.08 E-value=0.044 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
.+.++.|.|++|||||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45689999999999999999865
No 274
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.05 E-value=0.032 Score=54.91 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+.+|.|.|||||||+++.+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
No 275
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.00 E-value=0.78 Score=61.06 Aligned_cols=88 Identities=9% Similarity=0.069 Sum_probs=46.2
Q ss_pred CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhcc--C-CCC-----Cceeeeeeecccc----cchhhcc-cCccc
Q psy9384 155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNH--H-LFP-----PWLFLFCTVRRQS----KSIKKMF-LGFHK 221 (978)
Q Consensus 155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~--~-~~~-----~~~~~~~~sr~~~----~~i~~~~-~~~~~ 221 (978)
..+.+++||-+|=...+. .-....++.|++++.... . ... .++.++.++.|+. ..+..+| +.+..
T Consensus 1335 gk~~VlFiDEinmp~~d~--yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDK--YGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp SSCEEEEEETTTCSCCCS--SSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred CceEEEEecccccccccc--cCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Confidence 456899999877543221 012235667777765321 0 000 2466777777763 2344443 45556
Q ss_pred cccccccchhhhhHHHHHHHHHh
Q psy9384 222 LSLDDLRKSHVIRDMQQYILLRL 244 (978)
Q Consensus 222 i~l~~~~~~~~~~Di~~yi~~~l 244 (978)
+.+...+.+....-...++...+
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHHHHHHHh
Confidence 66655444444445555555444
No 276
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.98 E-value=0.25 Score=56.17 Aligned_cols=61 Identities=18% Similarity=0.083 Sum_probs=38.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL 99 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl 99 (978)
.+.++.|.|+.|+|||||++.+.--+...+..- . ....++|.+-+.......++...+...
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I-~--~~~~i~~v~Q~~~~~~~~tv~e~~~~~ 441 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-E--WDLTVAYKPQYIKAEYEGTVYELLSKI 441 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC-C--CCCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-E--EeeEEEEEecCccCCCCCcHHHHHHhh
Confidence 456899999999999999999986554322111 0 023478777544333445666666543
No 277
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.94 E-value=0.37 Score=50.45 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+.--+.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999875543
No 278
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.94 E-value=0.034 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+++|.|.|||||||++..+.+.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
No 279
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.89 E-value=0.22 Score=55.95 Aligned_cols=61 Identities=18% Similarity=0.081 Sum_probs=38.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL 99 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl 99 (978)
.+.++.|.|+.|||||||++.+.--+...+..-. ....++|++-+.......++...+...
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~---~~~~i~~v~Q~~~~~~~~tv~~~~~~~ 371 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE---WDLTVAYKPQYIKADYEGTVYELLSKI 371 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC---CCCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECceEEEEecCCcCCCCCcHHHHHHhh
Confidence 3568999999999999999999865543211110 023477777554333445666665543
No 280
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.89 E-value=0.042 Score=54.10 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+++|.|+|||||||++..+.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456889999999999999999986653
No 281
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.83 E-value=0.039 Score=54.71 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....++|.|.|||||||+++.+.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999844
No 282
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.82 E-value=0.25 Score=54.30 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=35.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFS 104 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~ 104 (978)
.+.+..|.|.||+|||+++..++.+... ..+..++||-+ . .+...+..-++.+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--------~~g~~vl~~sl--E----~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--------KEGVGVGIYSL--E----MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--------TTCCCEEEEES--S----SCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--------hCCCeEEEEEC--C----CCHHHHHHHHHHHHc
Confidence 4568889999999999999999854321 01345666443 2 245566666555544
No 283
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.73 E-value=0.035 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+..|.|.|||||||+++.+.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999998554
No 284
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.69 E-value=0.036 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+++|.|.|||||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999744
No 285
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.55 E-value=0.05 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...++.|+|+|||||||+++.+.+.+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345788999999999999999986553
No 286
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.50 E-value=0.093 Score=57.97 Aligned_cols=48 Identities=29% Similarity=0.308 Sum_probs=32.2
Q ss_pred CcccccccchHHH---HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 10 KKFFCREWAFVKL---VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 10 ~~f~~r~w~~~~~---~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.|.+-..+.+ .+|+... ....+-+.++|+||+|||+|+..+...+
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~----~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSK----KMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhC----CCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 4566777666543 3444432 1133458889999999999999998554
No 287
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.49 E-value=0.061 Score=52.07 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy9384 39 GALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~ 59 (978)
++.|.|+|||||||+++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999975
No 288
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.48 E-value=0.043 Score=53.67 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.-+++|.|+|||||||++..+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999744
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.48 E-value=0.062 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
...++.|+|.+||||||+++.+.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999974
No 290
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.47 E-value=0.12 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++.|.|++|+|||+|+..+.+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45688899999999999999998665
No 291
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.44 E-value=0.058 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhc
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
-++.|+|.+||||||+++.+.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999973
No 292
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.43 E-value=0.057 Score=59.82 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+..|+.. +.+.+.|.|+||+|||+++..++..+.
T Consensus 36 ~~~~~i~~-------~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 36 IVMKAIKE-------KKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHS-------SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhc-------CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34567775 235999999999999999999997664
No 293
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.41 E-value=0.037 Score=54.03 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+|.|+|||||||+++.+.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999844
No 294
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.40 E-value=0.037 Score=54.15 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..++|.|.|||||||+++.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999844
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.37 E-value=0.069 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+.|+|++|+|||||+..+++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998553
No 296
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.36 E-value=0.21 Score=56.04 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS 105 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~ 105 (978)
.+.+..|.|.||+|||+|+..++.+.... .+..+.||-+ .. ++..+++-++.+...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--------~g~~vl~~s~--E~----s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--------MGKKVGLAML--EE----SVEETAEDLIGLHNR 296 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--------SCCCEEEEES--SS----CHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--------cCCcEEEEec--cC----CHHHHHHHHHHHHcC
Confidence 45678889999999999999998664421 1345665432 22 455666666555543
No 297
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.34 E-value=0.068 Score=50.10 Aligned_cols=22 Identities=55% Similarity=0.744 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.|.|++|||||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999988744
No 298
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.33 E-value=0.069 Score=58.05 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....+++|.|.|||||||++..+.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999744
No 299
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.31 E-value=0.066 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++.|.|+.|||||||++.+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998554
No 300
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.29 E-value=0.072 Score=53.28 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..++.|.|+||||||||++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999844
No 301
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.29 E-value=0.2 Score=50.86 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..++.|.|++|+|||+|+..+.+.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35788999999999999999987653
No 302
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.25 E-value=0.041 Score=58.67 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=30.5
Q ss_pred cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.|.|.+.+.+....-+..+ ..+-++|+|+||+|||+|+..+...+.
T Consensus 25 ~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3667766554433222221 223489999999999999999986654
No 303
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.25 E-value=0.19 Score=55.82 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc
Q psy9384 154 PKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS 209 (978)
Q Consensus 154 ~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~ 209 (978)
..+.++||||.+.+.-... .+++.+.|.++.+... ..++.+++++.|+.
T Consensus 341 ~lP~ivvVIDE~~~L~~~~----~~~~~~~L~~Iar~GR---a~GIhLIlaTQRPs 389 (574)
T 2iut_A 341 TLPTIVVVVDEFADMMMIV----GKKVEELIARIAQKAR---AAGIHLILATQRPS 389 (574)
T ss_dssp CCCEEEEEESCCTTHHHHT----CHHHHHHHHHHHHHCT---TTTEEEEEEESCCC
T ss_pred CCCcEEEEEeCHHHHhhhh----hHHHHHHHHHHHHHHh---hCCeEEEEEecCcc
Confidence 3457999999998764221 2234456666666543 24789999887765
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.25 E-value=0.05 Score=50.06 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
-++++|.|.+|+|||||+..++..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999665
No 305
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.23 E-value=0.068 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhc
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
++++.|.|++|+|||||+..+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 306
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.21 E-value=0.066 Score=51.74 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy9384 39 GALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+.|.|.+||||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999999999985
No 307
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.19 E-value=0.52 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+.--+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 457899999999999999999885543
No 308
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.14 E-value=0.2 Score=54.76 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+..|.|.||+|||+++..++.+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 45688889999999999999998553
No 309
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.14 E-value=0.13 Score=52.83 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..++.|.|++|||||+|+..+.+.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999988654
No 310
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.11 E-value=0.067 Score=53.63 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+++|.|++||||||+++.+.+.|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998554
No 311
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.10 E-value=0.075 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+.+.++.|.+||||||++..+.++|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999987764
No 312
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.07 E-value=0.051 Score=52.62 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+.+|.|.+||||||++..+.+++.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356888999999999999999987764
No 313
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.05 E-value=0.26 Score=46.24 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=33.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL 99 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl 99 (978)
..+.+.+++++|.|||+++--+.-.... ....|.++=|-.+. .......++..|
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g---------~G~rV~~vQF~Kg~-~~~gE~~~l~~L 80 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVG---------HGKNVGVVQFIKGT-WPNGERNLLEPH 80 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHH---------TTCCEEEEESSCCS-SCCHHHHHHGGG
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEEeeCCC-CCccHHHHHHhC
Confidence 5678999999999999999877622111 13445544333332 444555566554
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.99 E-value=0.078 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++++|+|.+||||||++..+.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999743
No 315
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.90 E-value=0.079 Score=51.52 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
...++.|.|++|||||||+..+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999974
No 316
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.83 E-value=0.094 Score=49.68 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++++.|.|++|+|||||+..+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 55789999999999999999998553
No 317
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.77 E-value=0.27 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+..|.|.||+|||+|+..++.+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688899999999999999998553
No 318
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.76 E-value=0.1 Score=55.79 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.+.|+|+||+|||+++..+...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999998554
No 319
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.66 E-value=0.62 Score=48.68 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+.--+.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 456899999999999999999985543
No 320
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.58 E-value=0.082 Score=53.17 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.|+|+||+|||+|+..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999844
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.51 E-value=0.088 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++.|.|+||||||||+..+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5788999999999999999754
No 322
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.45 E-value=0.1 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhc
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
+.+..|+|.+||||||++..+.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999974
No 323
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.28 E-value=0.11 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
...++.|+|.|||||||++..+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999997
No 324
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.26 E-value=0.28 Score=50.49 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=38.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCCCch---------------hhhhhhhccceeeeccccCCC--CccCHHHH
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSAESSF---------------SQQHNLRKKLLAYHFCQSYDL--ATFSVQNF 95 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~---------------~~~~~~~~~~~~~ff~~~~~~--~~~~~~~~ 95 (978)
.+++.|.|++|+|||+|+..+.+.+....- .+........+.|||.+..++ +..+...+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F 115 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADF 115 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHH
Confidence 358899999999999999999988752110 000112245688888887766 34444333
No 325
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.24 E-value=0.036 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++.|.|.+||||||++..+.+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998654
No 326
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.14 E-value=0.12 Score=50.29 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||+..+...+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998554
No 327
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.09 E-value=0.35 Score=50.63 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+.--+.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456899999999999999999985543
No 328
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.07 E-value=0.095 Score=54.31 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhc
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+++|.|.|||||||+++.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999974
No 329
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.02 E-value=0.11 Score=51.78 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++-|.|+.|||||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999987543
No 330
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.81 E-value=0.082 Score=51.91 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+.+|.|.+||||||++..+.+.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346889999999999999999986653
No 331
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.78 E-value=0.12 Score=51.23 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=27.7
Q ss_pred ccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 14 CREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 14 ~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+..++++.+.-=+... -....++|.|.+||||||++..+...
T Consensus 30 ~~~~~l~~~~~~i~~~-----l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPY-----LNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp --CHHHHHHHHTTHHH-----HTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred Ccchhhhhhhhhhhhh-----cCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4456676654333310 01358999999999999999999743
No 332
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.73 E-value=0.13 Score=49.12 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=17.4
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q psy9384 39 GALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii 58 (978)
+..++|.||+|||++|...+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 56789999999999998765
No 333
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.69 E-value=0.13 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.718 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
.+.++.|.|++|||||||+..++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45789999999999999999887
No 334
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.62 E-value=0.14 Score=48.30 Aligned_cols=24 Identities=33% Similarity=0.113 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+++|+||+||||++-.++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 358889999999999999777643
No 335
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.60 E-value=0.14 Score=49.51 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|||||||+..+..-+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45699999999999999999997443
No 336
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.60 E-value=0.075 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.022 Sum_probs=19.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+.+|.|++||||||++..+.+.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999986653
No 337
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.53 E-value=0.16 Score=47.66 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+.|.|++|+|||+|+..+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4668899999999999999999764
No 338
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.53 E-value=0.14 Score=50.01 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.++.|.|+.|||||||+..+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999743
No 339
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.52 E-value=0.096 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.052 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+.++.|.+||||||++..+.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998665
No 340
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.44 E-value=0.15 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|+|||||++.+...+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 55689999999999999999998655
No 341
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.42 E-value=0.12 Score=55.59 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++|+|+||+|||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998554
No 342
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.36 E-value=0.15 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+.+..|.|+||+|||+|+..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 343
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.33 E-value=0.24 Score=47.49 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
++..|.|..||||||++..+.+.|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5778899999999999999997764
No 344
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.32 E-value=0.21 Score=51.31 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=34.0
Q ss_pred cccchHHHHHHHhcCCCC--CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 15 REWAFVKLVHCLESKTNS--KPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~--~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++|+.+++.+.+.....- ......++.|.|.+|+||||++..+...+
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 567777888877653200 12345689999999999999999998543
No 345
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.32 E-value=0.14 Score=50.62 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.++.|.|++|||||||+..+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999854
No 346
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.28 E-value=0.15 Score=50.45 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.++.|.|+||+|||+|+..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468899999999999999999843
No 347
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.21 E-value=0.17 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++.|.|++|+|||+|+..+.+.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 578899999999999999887543
No 348
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.19 E-value=0.11 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=16.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh-cC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV-FP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii-~~ 60 (978)
.+.++.|.|++|||||||+..+. ..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 35689999999999999999998 54
No 349
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.05 E-value=0.13 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+..|.|.+||||||++..+.+++.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5788899999999999999997764
No 350
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.96 E-value=0.12 Score=52.32 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+..|.|.+||||||++..+.+++.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35778899999999999999998774
No 351
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.94 E-value=0.17 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+.++.|.|+||+|||||+..+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 556899999999999999999984
No 352
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.93 E-value=0.18 Score=50.01 Aligned_cols=27 Identities=30% Similarity=0.181 Sum_probs=22.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 34 PGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 34 ~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+....++.|.|.|||||||++..+.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345568899999999999999999743
No 353
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.91 E-value=0.12 Score=49.91 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+..+.|.+|+||||++..+.+++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346888899999999999999997764
No 354
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.89 E-value=0.17 Score=46.94 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
-.++.|.|.+|+|||||+..++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999998553
No 355
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.89 E-value=0.39 Score=47.81 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=35.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFI 96 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l 96 (978)
.+.++.|.|+.|||||||+..+..-+...+..-. ....++|.|-+.......++...+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~~~i~~v~q~~~~~~~~tv~enl 87 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE---VYQSIGFVPQFFSSPFAYSVLDIV 87 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE---ECSCEEEECSCCCCSSCCBHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---EeccEEEEcCCCccCCCCCHHHHH
Confidence 4568999999999999999999866543221110 123467766443333334554443
No 356
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.86 E-value=0.17 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.++.|.|++|||||||+..+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 5678999999999999999998743
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.69 E-value=0.28 Score=50.56 Aligned_cols=26 Identities=19% Similarity=-0.012 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..-++-|.|++||||||++..+...+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578899999999999999987544
No 358
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.65 E-value=0.18 Score=47.66 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++.|.|++|+|||||++.+...+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368899999999999999988543
No 359
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.48 E-value=1 Score=45.02 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.++.|.|+.|||||||++.+.--+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998665
No 360
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.43 E-value=0.19 Score=45.76 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....+.|.|.+|+|||+++..+++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3457889999999999999999854
No 361
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.29 E-value=0.2 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.++++.|.|+.|||||||++.+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 5579999999999999999998744
No 362
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.25 E-value=0.18 Score=57.02 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++++.|+|+||+|||+++..++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998554
No 363
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.12 E-value=0.13 Score=58.20 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++||+|.|||||||++..+.+.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998654
No 364
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.11 E-value=0.21 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+..|.|+||+|||+|+..++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999854
No 365
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.05 E-value=0.63 Score=50.11 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=31.6
Q ss_pred cchHHHHHHHhcCCCC--CCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 17 WAFVKLVHCLESKTNS--KPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 17 w~~~~~~~wl~~~~~~--~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+++.+++...... ..+...++.+.|.||+||||++..++..+.
T Consensus 78 ~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 78 IVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp HHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 4445667776642111 112467899999999999999999986543
No 366
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.88 E-value=0.13 Score=47.62 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.++.|.|..|||||||+..++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999844
No 367
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.79 E-value=0.24 Score=51.10 Aligned_cols=26 Identities=15% Similarity=-0.031 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++-|.|++|||||||+..+...+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 55689999999999999999987543
No 368
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.76 E-value=0.27 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++++.|.|+.||||||++..++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44699999999999999999987543
No 369
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.75 E-value=0.18 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+++|+|.||||||+++..+.+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999744
No 370
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.69 E-value=0.15 Score=56.97 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++|+.|.|||||||++..+.+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998543
No 371
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.65 E-value=0.25 Score=48.72 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|||||||.+.+..-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998554
No 372
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.57 E-value=0.27 Score=55.51 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++||+|.|||||||++..+.+.|
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998553
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.57 E-value=0.24 Score=51.27 Aligned_cols=26 Identities=19% Similarity=0.018 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++-|.|++|||||||++.+...+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999987543
No 374
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.46 E-value=0.24 Score=49.45 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+..|.|+||+|||+|+..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999998888743
No 375
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.43 E-value=0.23 Score=50.63 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+..|.|+||+|||||+..++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988743
No 376
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.43 E-value=0.15 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+..|.|+||+|||+|+..++.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999854
No 377
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.41 E-value=0.14 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.242 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+..|.|+||+|||+|+..++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999844
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.37 E-value=0.35 Score=49.63 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=30.6
Q ss_pred ccchHHHHHHHhcCC--C--C-CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 16 EWAFVKLVHCLESKT--N--S-KPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~--~--~-~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.++.+++.+.+.... . + ....+.++.|.|+.|+||||+++.+...
T Consensus 74 ~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 74 DALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp HHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 455566777765431 0 0 1234568999999999999999988743
No 379
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=88.22 E-value=0.28 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.|.|.||+||||++..+...
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34888999999999999998744
No 380
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.07 E-value=0.24 Score=57.42 Aligned_cols=25 Identities=44% Similarity=0.650 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.+..|.|+||+|||+.+..+|.++
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999888554
No 381
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.05 E-value=0.17 Score=51.79 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=18.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++-|+|++||||||+++.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999997543
No 382
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.03 E-value=0.28 Score=47.59 Aligned_cols=25 Identities=20% Similarity=-0.020 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+.+++|+||+||||++-.++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH
Confidence 4568888999999999999888744
No 383
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.98 E-value=0.24 Score=47.59 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=29.1
Q ss_pred CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+.++| |...+++.+ . .+.++.|.|+.|||||||+..+.-
T Consensus 5 i~pk~~-g~~~~l~~i----~--------~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 5 IRPKTL-GQKHYVDAI----D--------TNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CCCCSH-HHHHHHHHH----H--------HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred cccCCH-hHHHHHHhc----c--------CCCEEEEECCCCCCHHHHHHHHhc
Confidence 455666 334556554 2 336899999999999999999873
No 384
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.89 E-value=0.26 Score=50.80 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+..|.|.||+|||||+..+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999844
No 385
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.78 E-value=0.22 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+-++++|+||+|||+++..+...+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 458899999999999999998655
No 386
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.78 E-value=0.39 Score=49.75 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=33.9
Q ss_pred cccchHHHHHHHhcCC-----C---CCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 15 REWAFVKLVHCLESKT-----N---SKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~-----~---~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++|+.+++.+++.... . .......++.+.|.+|+||||++..+...+
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 75 KDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp HHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566677888886542 0 012346689999999999999999998543
No 387
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.74 E-value=0.3 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+..|+|.|||||++++..+.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 4568899999999999999999753
No 388
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.70 E-value=0.31 Score=47.82 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999986654
No 389
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.57 E-value=0.31 Score=48.29 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+..-+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999985543
No 390
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.56 E-value=0.31 Score=50.91 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.+..|.|+||+|||+|+..++.+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 456889999999999999999986543
No 391
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.55 E-value=0.31 Score=48.41 Aligned_cols=27 Identities=37% Similarity=0.300 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999875543
No 392
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.52 E-value=0.33 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..|.|..||||||.+..+.++|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999997764
No 393
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.39 E-value=0.28 Score=56.23 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
++++.++|+||+|||++++.++..+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988554
No 394
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.39 E-value=0.34 Score=48.65 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999875543
No 395
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.34 E-value=0.41 Score=51.58 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=31.9
Q ss_pred ccchHHHHHHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 16 EWAFVKLVHCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.|+.+++.+++...... ..+...++.+.|.+|+||||++..+...+
T Consensus 73 ~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 73 SIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556677776642111 12246789999999999999999998554
No 396
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.32 E-value=0.33 Score=48.18 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999986553
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.31 E-value=0.36 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...++.|.|+.||||||++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999998743
No 398
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.31 E-value=0.2 Score=55.16 Aligned_cols=27 Identities=4% Similarity=-0.060 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...++||+|.+||||||++..+.+.|.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 336899999999999999999986654
No 399
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.25 E-value=0.29 Score=51.26 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+..|.|+||+|||+|+..++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999844
No 400
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.20 E-value=1.7 Score=58.63 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=24.5
Q ss_pred HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+..|+.. ++-+.++|+||+|||+++......+
T Consensus 1297 l~~ll~~--------~~pvLL~GptGtGKT~li~~~L~~l 1328 (3245)
T 3vkg_A 1297 LHAWLSE--------HRPLILCGPPGSGKTMTLTSTLRAF 1328 (3245)
T ss_dssp HHHHHHT--------TCCCEEESSTTSSHHHHHHHHGGGC
T ss_pred HHHHHHC--------CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 4567663 3568899999999999988877544
No 401
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.15 E-value=0.35 Score=48.81 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999986553
No 402
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.09 E-value=4.5 Score=42.78 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=65.4
Q ss_pred EEEEEeccccccccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hcccC-------ccc
Q psy9384 158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMFLG-------FHK 221 (978)
Q Consensus 158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~~~-------~~~ 221 (978)
-++++|-+++.+..- + ..|.+++.... ...+.++++|++|.+...... ..|+. .-.
T Consensus 224 gtlfldei~~l~~~~----Q----~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~ 295 (368)
T 3dzd_A 224 GTLFLDEVGELDQRV----Q----AKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQ 295 (368)
T ss_dssp SEEEEETGGGSCHHH----H----HHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEE
T ss_pred CeEEecChhhCCHHH----H----HHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeE
Confidence 379999999987431 2 23444444321 112346889998887654321 11221 113
Q ss_pred cccccccchhhhhHHHHHHHHHhcCchHHHh-hcCcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384 222 LSLDDLRKSHVIRDMQQYILLRLASEESLRV-HMNRDTAEMLNQLHIKS-NGCFLYLERVLDGIS 284 (978)
Q Consensus 222 i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~-~~~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~ 284 (978)
|.+...+. ..+||...+.+-+.+...... ......++..+.|...+ .|+..-++-+++.+.
T Consensus 296 i~lPpLre--R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 296 IYLPPLRE--RGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAV 358 (368)
T ss_dssp EECCCGGG--STTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred EeCCChhh--chhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 44543332 337888877776664432222 22335567777787766 888877777776653
No 403
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.09 E-value=0.73 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSAE 63 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~~ 63 (978)
.++.|.|+.|||||||++.+.--+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56899999999999999999865543
No 404
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=87.08 E-value=5.1 Score=41.93 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=59.5
Q ss_pred EEEEEecccc-ccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecc-cc----cchhhc-ccCccccccccccch
Q psy9384 158 YFILVDSIDE-THVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRR-QS----KSIKKM-FLGFHKLSLDDLRKS 230 (978)
Q Consensus 158 ~~iviDaLDE-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~-~~----~~i~~~-~~~~~~i~l~~~~~~ 230 (978)
-++|||..|. ... +....|.+.+. ..|+++.+|+++.. .. ..+.+. .+.+..++.....
T Consensus 78 kvvii~~~~~kl~~--------~~~~aLl~~le----~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~-- 143 (343)
T 1jr3_D 78 QTLLLLLPENGPNA--------AINEQLLTLTG----LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE-- 143 (343)
T ss_dssp EEEEEECCSSCCCT--------THHHHHHHHHT----TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC--
T ss_pred eEEEEECCCCCCCh--------HHHHHHHHHHh----cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC--
Confidence 4666776555 331 12334555554 33445556655532 21 112222 2234445554333
Q ss_pred hhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384 231 HVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS 284 (978)
Q Consensus 231 ~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~ 284 (978)
..++..++..++.+. .....++..+.|++.++|...-+.-.++.|.
T Consensus 144 --~~~l~~~l~~~~~~~------g~~i~~~a~~~l~~~~~gdl~~~~~elekl~ 189 (343)
T 1jr3_D 144 --QAQLPRWVAARAKQL------NLELDDAANQVLCYCYEGNLLALAQALERLS 189 (343)
T ss_dssp --TTHHHHHHHHHHHHT------TCEECHHHHHHHHHSSTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 478999998877622 2234456788899999999888887777764
No 405
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.07 E-value=0.35 Score=48.41 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 456899999999999999999986553
No 406
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.03 E-value=0.39 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
-.+.+.|+||+|||++|..+...+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 347889999999999999887554
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.90 E-value=0.35 Score=47.77 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+..-+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999986543
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.89 E-value=0.25 Score=51.06 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++.|.|++|||||+|+..+.+.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 578999999999999999998665
No 409
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.84 E-value=0.35 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.++.|.|+.|||||||.+.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.66 E-value=0.39 Score=48.06 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 456899999999999999999885543
No 411
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.53 E-value=0.38 Score=48.17 Aligned_cols=27 Identities=41% Similarity=0.391 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999975543
No 412
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.47 E-value=0.4 Score=48.27 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999875543
No 413
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.45 E-value=0.38 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
...++-|.|.||+|||||+..+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 414
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.39 E-value=0.41 Score=48.18 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.++.|.|+.|||||||++.+.--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 415
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.36 E-value=0.38 Score=44.53 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..|+|++|||||+++..+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 578999999999999999844
No 416
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.36 E-value=0.34 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.+..|.|+||+|||+|+..++-..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998554
No 417
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.28 E-value=0.41 Score=47.24 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.++.|.|+.|||||||.+.+.--+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999985543
No 418
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=86.14 E-value=0.32 Score=46.52 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
..+.+|.|.+|||||+++..+.+.|.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999986653
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.13 E-value=1.4 Score=49.30 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS 115 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~ 115 (978)
.+.++.|.|+.|||||||++.+.--+...+..-. .....++|.+-........++...+...............+.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~--~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVT--PEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE--SSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--ECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Q ss_pred h-hhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEe----ccccccccCCCcCCCcchhhHHHHHHh
Q psy9384 116 T-IVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVD----SIDETHVTNKKIYSDKATCSIADLLAR 190 (978)
Q Consensus 116 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviD----aLDE~~~~~~~~~~~~~~~~l~~l~~~ 190 (978)
+ +--...........+..+-+.-.+.+.|. ..+=++++| |||--. +..+.+.|.++...
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~---------~~p~lLlLDEPT~gLD~~~-------~~~i~~~l~~l~~~ 434 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLA---------KEADLYVLDQPSSYLDVEE-------RYIVAKAIKRVTRE 434 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH---------SCCSEEEEESTTTTCCHHH-------HHHHHHHHHHHHHH
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHH---------cCCCEEEEeCCccCCCHHH-------HHHHHHHHHHHHHh
Q ss_pred ccCCCCCceeeeeee
Q psy9384 191 NHHLFPPWLFLFCTV 205 (978)
Q Consensus 191 ~~~~~~~~~~~~~~s 205 (978)
... -+|++|
T Consensus 435 ~g~------tvi~vs 443 (538)
T 3ozx_A 435 RKA------VTFIID 443 (538)
T ss_dssp TTC------EEEEEC
T ss_pred CCC------EEEEEe
No 420
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.87 E-value=0.6 Score=48.96 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=31.0
Q ss_pred cccchHHHHHHHhcCC--C---CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 15 REWAFVKLVHCLESKT--N---SKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~--~---~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.++.+++.+.+.... . .....+.++.|.|..|+||||+++.+...
T Consensus 130 ~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 130 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3455566666665431 0 01234568999999999999999988744
No 421
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.85 E-value=0.43 Score=47.89 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456899999999999999999985543
No 422
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=85.84 E-value=0.48 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...++-|.|.||+|||||+..++..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999853
No 423
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.70 E-value=0.4 Score=50.95 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.++++.|.|++||||||++..+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5578999999999999999999854
No 424
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.70 E-value=0.3 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++||.|.+|||||||+..+...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 44689999999999999999998554
No 425
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.66 E-value=0.49 Score=46.10 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
....+.+.|.||+|||+|+..++..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 44688899999999999999998553
No 426
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=85.60 E-value=0.37 Score=49.80 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 33 KPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.++..++..|.|.||+|||+|+..++..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4557789999999999999999999854
No 427
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=85.49 E-value=0.42 Score=45.67 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy9384 39 GALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.+-|+|.+||||||+++.+.+
T Consensus 11 ~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999864
No 428
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.38 E-value=0.42 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
...+..|.|+||+|||+|+..++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 45789999999999999999775
No 429
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.34 E-value=0.54 Score=49.80 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 446899999999999999999987654
No 430
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.34 E-value=0.44 Score=46.84 Aligned_cols=25 Identities=36% Similarity=0.259 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+..|.|+.||||||++..+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4468889999999999999998754
No 431
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.10 E-value=0.49 Score=47.86 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+.--+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999985543
No 432
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.06 E-value=0.5 Score=44.37 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhc
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.++..|+|+.|||||+|...|.-
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998863
No 433
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=84.99 E-value=0.35 Score=54.30 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..++|++|.|||||||++..+.+.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997543
No 434
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.86 E-value=0.29 Score=51.65 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...+..|.|.||+|||+|+..++.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4568888999999999999999854
No 435
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.69 E-value=0.49 Score=50.96 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++++.|.|+.||||||++..++..+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 55789999999999999999998654
No 436
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.62 E-value=0.73 Score=50.15 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=31.5
Q ss_pred cccchHHHHHHHhcCCC---CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 15 REWAFVKLVHCLESKTN---SKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~---~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.|+.+.+.+.+..... .....+.++.|.|..|||||||+..+...
T Consensus 268 ~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 268 YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 45566666666653210 11234568999999999999999998743
No 437
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.52 E-value=0.7 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..-+.+.|.+|+|||+|+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346788999999999999999854
No 438
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.51 E-value=0.56 Score=48.63 Aligned_cols=45 Identities=24% Similarity=0.156 Sum_probs=30.2
Q ss_pred ccchHHHHHHHhcCCCC-------CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 16 EWAFVKLVHCLESKTNS-------KPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~-------~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+++.+++.+.+...... ....+.++.|.|++|+||||+++.+...
T Consensus 101 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 101 EAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp HHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455666666543100 1124568999999999999999999844
No 439
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.45 E-value=0.57 Score=47.92 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.+.|.+|+||||++..+...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998443
No 440
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.41 E-value=0.67 Score=49.63 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++++.|.|.+|+|||||+..+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998643
No 441
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.36 E-value=0.49 Score=54.47 Aligned_cols=25 Identities=44% Similarity=0.590 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
++..|.|+||+|||+++..++.++.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999998886553
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.29 E-value=0.68 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+..|.|++|+|||||+..+. .+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 588999999999999999998 54
No 443
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.17 E-value=0.57 Score=49.13 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+.--+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 456899999999999999999985543
No 444
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=84.03 E-value=0.39 Score=46.68 Aligned_cols=26 Identities=23% Similarity=0.055 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+..+.+|.|.+|||||+++..+.+.+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998554
No 445
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.03 E-value=0.58 Score=47.59 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456899999999999999999985543
No 446
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.01 E-value=0.63 Score=41.90 Aligned_cols=22 Identities=50% Similarity=0.755 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHh
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii 58 (978)
+++..|+|+.|+|||+|...+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999988875
No 447
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=83.99 E-value=0.36 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..++++.|.||+||||++..+.+.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999844
No 448
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.96 E-value=0.64 Score=47.54 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=30.8
Q ss_pred ccchHHHHHHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 16 EWAFVKLVHCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
..+.+++..++...... -.....++.+.|.+|+||||++..+...+
T Consensus 74 ~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 74 KIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp HHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445677787653100 01125688889999999999999998543
No 449
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=83.76 E-value=0.62 Score=49.30 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...++.|+|.||+|||||+..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 55688999999999999999998554
No 450
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.73 E-value=1.1 Score=48.44 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=34.6
Q ss_pred cccchHHHHHHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 15 REWAFVKLVHCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 15 r~w~~~~~~~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+.|+.+++.+++...... .....+++.+.|.+|+||||++..+...+
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 75 VKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567888888998753211 11245688889999999999999998554
No 451
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.65 E-value=0.77 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++.|.|++|+|||||...+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 588999999999999999998544
No 452
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.51 E-value=0.53 Score=49.06 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+.++.|.|+.|||||||++.+...+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999986653
No 453
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.30 E-value=0.84 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....+.|.|.+|+|||+|+..++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3466788899999999999999855
No 454
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.27 E-value=0.87 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.++.|.|.+|+|||||+..+...+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 578999999999999999998554
No 455
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.27 E-value=0.66 Score=48.92 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+.--+.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 457999999999999999999885543
No 456
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=82.99 E-value=0.62 Score=48.94 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+..|.|+||+|||+|+..++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998855
No 457
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.94 E-value=0.68 Score=44.00 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
--+.+.|.+|+|||+|...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34788999999999999999844
No 458
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=82.76 E-value=0.57 Score=47.95 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||++.+..-+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 456899999999999999999875543
No 459
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=82.53 E-value=0.58 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.|.|+.|+|||||+..+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999998743
No 460
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=82.51 E-value=0.65 Score=54.79 Aligned_cols=26 Identities=42% Similarity=0.571 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+++..|.|+||+|||+++..++.++.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999998886653
No 461
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=82.48 E-value=0.68 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.-|+|+|||||||++..+.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999864
No 462
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.48 E-value=0.65 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++..|.|+||+|||+|+-+++..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999998744
No 463
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.33 E-value=0.65 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
.+.+..|.|+||+|||+|+..++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999998854
No 464
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=82.32 E-value=0.67 Score=43.51 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.|.|.||+|||+|+..++..
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 678999999999999999864
No 465
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=82.19 E-value=0.74 Score=43.11 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..--+.+.|.||+|||+|...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3445888999999999999999854
No 466
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=82.11 E-value=0.81 Score=49.10 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384 35 GNNGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 35 ~~~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
...++..|.|.||||||++....+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4678999999999999999988873
No 467
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=82.09 E-value=0.65 Score=49.42 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
...+.|.|++|||||||++.+...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999986543
No 468
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=82.07 E-value=0.67 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
-+.|.|.+|+|||+|+..+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3678899999999999999854
No 469
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=82.06 E-value=0.48 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
-++|.|+||+|||.|+..+...+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999998654
No 470
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=81.99 E-value=0.75 Score=46.90 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+..+.|.|.+|+|||+++..++..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 457899999999999999999864
No 471
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.97 E-value=1 Score=42.33 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHhc
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVF 59 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~ 59 (978)
.--+.+.|.+|+|||+|...+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35588899999999999999984
No 472
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=81.93 E-value=0.88 Score=42.86 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+.+++|++|+||||.+-.++...
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999998887443
No 473
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=81.74 E-value=0.69 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.|.|.+|+|||+|+..+....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46778999999999999998553
No 474
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=81.35 E-value=0.81 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
.+.++.|.|+.|||||||.+.+.--+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45799999999999999999987543
No 475
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=81.27 E-value=0.79 Score=41.70 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.+.|.+|+|||+|+..++..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 678899999999999999854
No 476
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=81.24 E-value=0.8 Score=42.44 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
--+.|.|.||+|||+|...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999999854
No 477
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=81.22 E-value=1.5 Score=45.09 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=28.7
Q ss_pred hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
++++++++............-+.|.|.||+|||+|...++..
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 356677776531111123346889999999999999999854
No 478
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=81.20 E-value=0.78 Score=42.11 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.|.|.||+|||+|...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35778999999999999999854
No 479
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=81.16 E-value=0.81 Score=45.95 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
...+..+.|.+|+||||++..+...+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34678889999999999999998554
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=81.04 E-value=0.79 Score=43.93 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=19.6
Q ss_pred CCCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 3 TETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 3 ~~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
|++|-|+.-=.++.-+.+++..+.... ..--+.+.|.+|+|||+|...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~m~~~~~~~------~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 2 GSSHHHHHHSSGLVPRGSHMENLYFQG------QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----------------------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccccccccCCcccchhHHHhHhhcC------CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 444555433333444445555554432 2234778999999999999888743
No 481
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.01 E-value=0.78 Score=50.88 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
+..+.|.|++||||||++..+...+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999987664
No 482
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=80.90 E-value=0.78 Score=54.17 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++..|.|+||+|||+++..++.++
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999888554
No 483
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=80.75 E-value=0.6 Score=48.99 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+.++.|.|+.|||||||.+.+.--+.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999885443
No 484
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=80.43 E-value=0.92 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+..+.|.|.+|+|||+++..+++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456889999999999999999864
No 485
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=80.36 E-value=0.93 Score=41.91 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
-+.+.|.||+|||+|+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3778999999999999999854
No 486
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=80.05 E-value=0.89 Score=41.66 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.+.|.+|+|||+|+..+...
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 678899999999999999854
No 487
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=79.93 E-value=0.92 Score=41.45 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.+.|.||+|||+|...++..
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999988743
No 488
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=79.75 E-value=0.69 Score=44.55 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....+.|.|.+|+|||+|...+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456889999999999999988754
No 489
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=79.63 E-value=0.9 Score=41.44 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.+.|.+|+|||+|...+...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999744
No 490
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=79.56 E-value=1.3 Score=41.04 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
....+.+.|.+|+|||+|+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456888999999999999999753
No 491
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=79.52 E-value=1.3 Score=41.75 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 37 NGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 37 ~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..-+.+.|.+|+|||+|+..++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 345788999999999999999855
No 492
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=79.51 E-value=0.96 Score=41.40 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy9384 40 ALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 40 l~l~G~pG~GKS~l~~~ii~~ 60 (978)
+.+.|.||+|||+|...+...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 578899999999999999743
No 493
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=79.40 E-value=1.2 Score=41.81 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 38 GGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 38 ~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.|.+|+|||+|+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45888999999999999999853
No 494
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=79.35 E-value=1 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...++.+.|.||+|||||+..+...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5568889999999999999998743
No 495
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=79.17 E-value=0.93 Score=47.46 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFPSA 62 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~ 62 (978)
.+..+-|.|++|+|||||+..++....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567899999999999999999986543
No 496
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.02 E-value=0.59 Score=55.44 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
..+.+.|+|+||+|||+|++.+...
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999844
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.99 E-value=0.97 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHh
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIV 58 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii 58 (978)
...++.|.|++|||||||+..++
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
No 498
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.94 E-value=1.5 Score=48.35 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=29.9
Q ss_pred ccchHHHHHHHhcCCCCC---CCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384 16 EWAFVKLVHCLESKTNSK---PGNNGGALIIGGPGSGKTTLCKEIVFPS 61 (978)
Q Consensus 16 ~w~~~~~~~wl~~~~~~~---~~~~~~l~l~G~pG~GKS~l~~~ii~~l 61 (978)
+++.+++.+.+....... .....++.|.|.||+||||++..+...+
T Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 77 HAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp HHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344456677766531111 1345678889999999999999998543
No 499
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=78.71 E-value=1.3 Score=41.88 Aligned_cols=25 Identities=12% Similarity=0.229 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384 36 NNGGALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 36 ~~~~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
...-+.+.|.+|+|||+|...++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455788999999999999999854
No 500
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=78.67 E-value=1.1 Score=41.65 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy9384 39 GALIIGGPGSGKTTLCKEIVFP 60 (978)
Q Consensus 39 ~l~l~G~pG~GKS~l~~~ii~~ 60 (978)
-+.+.|.||+|||+|...++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3678999999999999999844
Done!