RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9384
(978 letters)
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 131 bits (331), Expect = 3e-32
Identities = 97/312 (31%), Positives = 143/312 (45%), Gaps = 40/312 (12%)
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLC-VVKLLLAAGAHVNAADS 484
V+ LL +GADVN G+T L HL + + +V+LLL AGA VNA +
Sbjct: 29 EVRRLLAAGADVNFRGEYGKTPL-------HLYLHYSSEKVKDIVRLLLEAGADVNAPER 81
Query: 485 EGRTALIASAYMGHA---DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
G T L Y+ +A D++ +++ AD+N +D GRT L V L + + KV+
Sbjct: 82 CGFTPLHL--YLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV-YLSGFNIN--PKVIR 136
Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC----EILLENEADQDHIDKSGRTPL--W 595
+LL KGA V+ D GMTPL A R+ +L++ AD +D R+ L
Sbjct: 137 LLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHH 194
Query: 596 AAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID--VVNQLLDRGMILGCLA 653
+ A V L+ G D G T L A + +V LL G+
Sbjct: 195 LQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI------ 248
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
S++ R+ G TPLHYAA+ + CR L+ GA ++ V +DG PL L ++
Sbjct: 249 ------SINA--RNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRN 300
Query: 714 GHYHLVEMFLEQ 725
+ V L +
Sbjct: 301 NNGRAVRAALAK 312
Score = 107 bits (268), Expect = 3e-24
Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 24/287 (8%)
Query: 370 DLELVDKHGQTALNVAAHQGF---VDAVQILLEAGANINHTDCEGWTPLRS-ASWGGHSA 425
D+ ++G+T L++ H D V++LLEAGA++N + G+TPL
Sbjct: 39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE 485
V+KLL+++GADVN D GRT L G ++ V++LLL GA VNA D
Sbjct: 99 VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINP-------KVIRLLLRKGADVNALDLY 151
Query: 486 GRTALIASAYMGHADIVSSILEY----DADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
G T L + + + +L AD+ D+ R+ L S A++V
Sbjct: 152 GMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ---SFKPRARIVR 206
Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEG--HRDVCEILLENEADQDHIDKSGRTPL-WAAA 598
L+ G D G TPL A R + LL + ++ G+TPL +AA
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV 266
Query: 599 SMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
+C L+ GA ++ + ++G T LS+ N V L +
Sbjct: 267 FNNPRACRRLIAL-GADINAVSSDGNTPLSLMVRNNNGRAVRAALAK 312
Score = 65.8 bits (161), Expect = 5e-11
Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPL---LVAAFEGHRDVCEILLENEADQDHIDK 588
+S+ + V LL GA V+ G TPL L + E +D+ +LLE AD + ++
Sbjct: 22 ASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER 81
Query: 589 SGRTPLWAAASMGH-ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID--VVNQLLDR 645
G TPL + LL+ GA V+ D GRT L V + NI+ V+ LL +
Sbjct: 82 CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK 141
Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE---EVCRALLEAGAKVDQVDND 702
G D D G TPL ++ E+ R L++AGA V VD+
Sbjct: 142 G--------------ADVNALDLYGMTPLA-VLLKSRNANVELLRLLIDAGADVYAVDDR 186
Query: 703 GRAPLILAAQDGHYHLV 719
R+ L H+HL
Sbjct: 187 FRSLL-------HHHLQ 196
Score = 47.7 bits (114), Expect = 3e-05
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 662 DEQHRDNCGWTPLHY---AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHL 718
D R G TPLH + E +++ R LLEAGA V+ + G PL L +
Sbjct: 39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98
Query: 719 VEMFLEQYEANVNQKSHDGRTALRVNMKN 747
V L + A+VN K GRT L V +
Sbjct: 99 VIKLLIKAGADVNAKDKVGRTPLHVYLSG 127
Score = 42.7 bits (101), Expect = 0.001
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 606 VALLLFWGAYVDTIDAEGRTVLSV---AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
V LL GA V+ G+T L + +++ D+V LL+ G D
Sbjct: 30 VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA--------------D 75
Query: 663 EQHRDNCGWTPLHY---AAIEGHEEVCRALLEAGAKVDQVDNDGRAPL--ILAAQDGHYH 717
+ CG+TPLH A +V + L++AGA V+ D GR PL L+ + +
Sbjct: 76 VNAPERCGFTPLHLYLYNATT--LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPK 133
Query: 718 LVEMFLEQYEANVNQKSHDGRTALRVNMKNV 748
++ + L + A+VN G T L V +K+
Sbjct: 134 VIRLLLRK-GADVNALDLYGMTPLAVLLKSR 163
Score = 39.6 bits (93), Expect = 0.008
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 32/184 (17%)
Query: 331 TPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGF 390
TP+ + S +S++ L + + +++GQT L+ AA
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLIAG--------------ISINARNRYGQTPLHYAAVFNN 269
Query: 391 VDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA 450
A + L+ GA+IN +G TPL + V+ L T A
Sbjct: 270 PRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVA---ATLNTA 326
Query: 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA 510
+ GG + LCV K++L + HAD + E +A
Sbjct: 327 SVAGGDIPSDATR--LCVAKVVLRGAFSLLPEPIRAY----------HADFIR---ECEA 371
Query: 511 DINQ 514
+I
Sbjct: 372 EIAV 375
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 120 bits (303), Expect = 5e-32
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
D+ G+T L++AA G ++ V++LLE GA++N D +G TPL A+ GH +VKLLL+
Sbjct: 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GADVN D G T L AA G+L+ VVKLLL GA VNA D +GRT L +
Sbjct: 63 GADVNARDKDGNTPLHLAARNGNLD---------VVKLLLKHGADVNARDKDGRTPLHLA 113
Query: 494 AYMGHADIVSSIL 506
A GH ++V +L
Sbjct: 114 AKNGHLEVVKLLL 126
Score = 119 bits (300), Expect = 1e-31
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 5/131 (3%)
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
N +D DGRT L ++A S+G+ +VV +LLE GA V+ +D +G TPL +AA GH ++
Sbjct: 1 NARDEDGRTPLHLAA-----SNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEI 55
Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
++LLE AD + DK G TPL AA G+ V LLL GA V+ D +GRT L +AA
Sbjct: 56 VKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK 115
Query: 633 QGNIDVVNQLL 643
G+++VV LL
Sbjct: 116 NGHLEVVKLLL 126
Score = 118 bits (298), Expect = 3e-31
Identities = 63/140 (45%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
+ D +G TPL +AA GH +V ++LLEN AD + D GRTPL AA GH V LLL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
GA V+ D +G T L +AA GN+DVV LL G D RD G
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG--------------ADVNARDKDG 106
Query: 671 WTPLHYAAIEGHEEVCRALL 690
TPLH AA GH EV + LL
Sbjct: 107 RTPLHLAAKNGHLEVVKLLL 126
Score = 118 bits (297), Expect = 4e-31
Identities = 59/140 (42%), Positives = 81/140 (57%), Gaps = 14/140 (10%)
Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
+ D+ GRTPL AAS GH V LLL GA V+ D +GRT L +AA G++++V LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 644 DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDG 703
++G + RD G TPLH AA G+ +V + LL+ GA V+ D DG
Sbjct: 61 EKGADV--------------NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG 106
Query: 704 RAPLILAAQDGHYHLVEMFL 723
R PL LAA++GH +V++ L
Sbjct: 107 RTPLHLAAKNGHLEVVKLLL 126
Score = 115 bits (289), Expect = 4e-30
Identities = 65/140 (46%), Positives = 84/140 (60%), Gaps = 14/140 (10%)
Query: 405 NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLG 464
N D +G TPL A+ GH VVKLLL++GADVN D GRT L AA GHLE
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLE------ 54
Query: 465 PLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALS 524
+VKLLL GA VNA D +G T L +A G+ D+V +L++ AD+N +D DGRT L
Sbjct: 55 ---IVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLH 111
Query: 525 VSALCVPSSDGYAKVVSILL 544
++A G+ +VV +LL
Sbjct: 112 LAAKN-----GHLEVVKLLL 126
Score = 115 bits (289), Expect = 5e-30
Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 14/140 (10%)
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N D GRT L AA GHLEV VKLLL GA VNA D++GRT L +A G
Sbjct: 1 NARDEDGRTPLHLAASNGHLEV---------VKLLLENGADVNAKDNDGRTPLHLAAKNG 51
Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
H +IV +LE AD+N +D DG T L ++A +G VV +LL+ GA V+ D++G
Sbjct: 52 HLEIVKLLLEKGADVNARDKDGNTPLHLAA-----RNGNLDVVKLLLKHGADVNARDKDG 106
Query: 558 MTPLLVAAFEGHRDVCEILL 577
TPL +AA GH +V ++LL
Sbjct: 107 RTPLHLAAKNGHLEVVKLLL 126
Score = 104 bits (261), Expect = 3e-26
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 11/134 (8%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D ++ LH + ++ ++K L++ D+ D G+T L++AA G ++ V++LLE
Sbjct: 4 DEDGRTPLHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++N D +G TPL A+ G+ VVKLLL+ GADVN D GRT L AA GHLE
Sbjct: 62 KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE- 120
Query: 460 TIVLGPLCVVKLLL 473
VVKLLL
Sbjct: 121 --------VVKLLL 126
Score = 100 bits (251), Expect = 6e-25
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 15/125 (12%)
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ D +GRT L +AA+ G+++VV LL+ G D +DN G TPLH
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGA--------------DVNAKDNDGRTPLHL 46
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA GH E+ + LLE GA V+ D DG PL LAA++G+ +V++ L+ + A+VN + D
Sbjct: 47 AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKD 105
Query: 737 GRTAL 741
GRT L
Sbjct: 106 GRTPL 110
Score = 57.4 bits (139), Expect = 8e-10
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
+AA GH + V+LLL GAD D+ GR +AAK+GH +++LL + D
Sbjct: 13 LAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD 72
Query: 949 YYY--YNSAKSGHETVLRLLKQYADDI 973
+ +A++G+ V++LL ++ D+
Sbjct: 73 GNTPLHLAARNGNLDVVKLLLKHGADV 99
Score = 56.2 bits (136), Expect = 2e-09
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
+AA+ GH + V+LLL GAD D G +AA++G+ V++LL ++ D
Sbjct: 46 LAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105
Query: 949 YYY--YNSAKSGHETVLRLL 966
+ +AK+GH V++LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLL 125
Score = 30.0 bits (68), Expect = 2.3
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 911 HSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEY-------FVHYYYYYNSAKSGHETVL 963
D GR +AA +GH V++LL + D +H AK+GH ++
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLA-----AKNGHLEIV 56
Query: 964 RLLKQYADDI 973
+LL + D+
Sbjct: 57 KLLLEKGADV 66
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 84.6 bits (210), Expect = 9e-20
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 11/102 (10%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
L++AA G ++ V++LLE GA++N + T L A+ G+ +VKLLL+ GADVN D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNL--GDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
G TAL AA G+LE +VKLLL GA +N D
Sbjct: 59 KDGNTALHLAARNGNLE---------IVKLLLEHGADINLKD 91
Score = 84.6 bits (210), Expect = 9e-20
Identities = 48/102 (47%), Positives = 61/102 (59%), Gaps = 11/102 (10%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ G+ +VKLLL+ GADVN D TAL AA G+LE+ VKLLL
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEI---------VKLLLE 49
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD 516
GA VNA D +G TAL +A G+ +IV +LE+ ADIN +D
Sbjct: 50 HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 82.3 bits (204), Expect = 5e-19
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH N+ L+K L+ D+ L D TAL++AA G ++ V++LLE GA++N
Sbjct: 1 LHLAAKNGNLELVKLLLEKGA--DVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
D +G T L A+ G+ +VKLLL+ GAD+N D
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 77.7 bits (192), Expect = 2e-17
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 17/107 (15%)
Query: 627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVC 686
L +AA GN+++V LL++G + D T LH AA G+ E+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADV--------------NLGDTD--TALHLAARNGNLEIV 44
Query: 687 RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
+ LLE GA V+ D DG L LAA++G+ +V++ LE + A++N K
Sbjct: 45 KLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLE-HGADINLK 90
Score = 75.4 bits (186), Expect = 2e-16
Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 16/107 (14%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
L AA G+ V LLL GA V+ D + T L +AA GN+++V LL+ G
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHG------- 51
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD 700
D +D G T LH AA G+ E+ + LLE GA ++ D
Sbjct: 52 -------ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 74.2 bits (183), Expect = 3e-16
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
G ++V +LLEKGA V+ D T L +AA G+ ++ ++LLE+ AD + DK G T L
Sbjct: 8 GNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTAL 65
Query: 595 WAAASMGHASCVALLLFWGAYVDTID 620
AA G+ V LLL GA ++ D
Sbjct: 66 HLAARNGNLEIVKLLLEHGADINLKD 91
Score = 71.9 bits (177), Expect = 3e-15
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 16/107 (14%)
Query: 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILE 507
L AA G+LE+ VKLLL GA VN D++ TAL +A G+ +IV +LE
Sbjct: 1 LHLAAKNGNLEL---------VKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLE 49
Query: 508 YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
+ AD+N +D DG TAL ++A G ++V +LLE GA ++ +D
Sbjct: 50 HGADVNAKDKDGNTALHLAARN-----GNLEIVKLLLEHGADINLKD 91
Score = 71.9 bits (177), Expect = 3e-15
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
L +AA G+ ++ ++LLE AD + D T L AA G+ V LLL GA V+ D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
+G T L +AA GN+++V LL+ G
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHG 84
Score = 67.7 bits (166), Expect = 7e-14
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
LH AA G+ E+ + LLE GA V+ D D L LAA++G+ +V++ LE + A+VN K
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLE-HGADVNAK 57
Query: 734 SHDGRTAL 741
DG TAL
Sbjct: 58 DKDGNTAL 65
Score = 54.6 bits (132), Expect = 3e-09
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
+ LH N+ ++K L+ D+ DK G TAL++AA G ++ V++LLE G
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGA--DVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84
Query: 402 ANINHTD 408
A+IN D
Sbjct: 85 ADINLKD 91
Score = 53.8 bits (130), Expect = 5e-09
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ +AA+ G+ + V+LLL +GAD D G A +AA++G+ E V LL+ AD
Sbjct: 32 LHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86
Score = 46.9 bits (112), Expect = 2e-06
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-------A 939
+ +AA+ G+ + V+LLL GAD D A +AA++G+ +++LL ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 940 DDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
D +H +A++G+ +++LL ++ DI
Sbjct: 59 KDGNTALHL-----AARNGNLEIVKLLLEHGADI 87
Score = 33.8 bits (78), Expect = 0.067
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSD 913
+ +AA+ G+ + V+LLL +GAD D
Sbjct: 65 LHLAARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 92.8 bits (230), Expect = 3e-19
Identities = 109/388 (28%), Positives = 179/388 (46%), Gaps = 53/388 (13%)
Query: 395 QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454
++LLE GA++N D TP+ A+ G++ +V LLL GADVN + + L A
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS 221
Query: 455 GHLEV---------TIVLGPLCVVK-----------LLLAAGAHVNAADSEGRTAL-IAS 493
+++ I L ++K LL AG VN+ D T L AS
Sbjct: 222 KNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHAS 281
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY-AKVVSILLEKGAKVDH 552
+ +V +LE AD+N ++ G T L + A +GY + + L+ GA V+
Sbjct: 282 QAPSLSRLVPKLLERGADVNAKNIKGETPLYLMA-----KNGYDTENIRTLIMLGADVNA 336
Query: 553 EDREGMTPLLVAA-FEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
DR +TPL A+ + ++D+ LLE A+ + D +TP+ AA + + LL
Sbjct: 337 ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD 396
Query: 612 WGAYVDTIDAEGRTVLSVAAAQGN-IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
+GA ++ + + T L A N V L+DRG +++ +++D
Sbjct: 397 YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG------------ANVNSKNKDLS- 443
Query: 671 WTPLHYAAIEGHE-EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
TPLHYA + + +V LL+ GA V+ ++ + PL++A + YH + L Y A
Sbjct: 444 -TPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALE---YHGIVNILLHYGAE 499
Query: 730 VNQKSHDGRTALRVNMKNVTKLSFWYLL 757
+ + S +L NM SF Y++
Sbjct: 500 L-RDSRVLHKSLNDNM-----FSFRYII 521
Score = 66.2 bits (161), Expect = 6e-11
Identities = 86/324 (26%), Positives = 129/324 (39%), Gaps = 49/324 (15%)
Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
L + ++LL GA VNA D T + +A G+A +V+ +L Y AD+N D + L
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLE- 216
Query: 526 SALCVPSSDGYAKVVSIL----------LEKGAKVDHEDREGMTPLLVAAFEGHR-DVCE 574
C S + +I+ L + +ED E L A F + D C+
Sbjct: 217 ---CAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK 273
Query: 575 ------------------ILLENEADQDHIDKSGRTPLWAAASMGH-ASCVALLLFWGAY 615
LLE AD + + G TPL+ A G+ + L+ GA
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333
Query: 616 VDTIDAEGRTVLSVAAA-QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
V+ D T L A+ N D+V LL+ G + RD C TP+
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGA--------------NVNARDYCDKTPI 379
Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734
HYAA+ + + LL+ GA ++ + L A + ++ L ANVN K+
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN 439
Query: 735 HDGRTALRVNMKNVTKLSFWYLLI 758
D T L K KL +L+
Sbjct: 440 KDLSTPLHYACKKNCKLDVIEMLL 463
Score = 52.0 bits (124), Expect = 1e-06
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 392 DAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451
D V LLE GAN+N D TP+ A+ + ++ LL GAD+ TAL A
Sbjct: 356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415
Query: 452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL-IASAYMGHADIVSSILEYDA 510
G + P VK L+ GA+VN+ + + T L A D++ +L+ A
Sbjct: 416 LCGTN--------PYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA 467
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
D+N + + L ++ Y +V+ILL GA++
Sbjct: 468 DVNAINIQNQYPLLIAL-------EYHGIVNILLHYGAEL 500
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 85.5 bits (212), Expect = 2e-17
Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 32/226 (14%)
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCV---VKLLLAAGAHVNAA 482
VVK+LL +GAD+N S T L H I V VKLLL GA+VNA
Sbjct: 50 VVKILLDNGADINSSTKNNSTPL-------HYLSNIKYNLTDVKEIVKLLLEYGANVNAP 102
Query: 483 DSEGRTALI--ASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
D+ G T L+ S IV +L+ A++N +++DG L + + S+ K++
Sbjct: 103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY---LESNKIDLKIL 159
Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM 600
+L++KG ++ ++R LL + D G TPL A
Sbjct: 160 KLLIDKGVDINAKNR-----------------VNYLLSYGVPINIKDVYGFTPLHYAVYN 202
Query: 601 GHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
+ V LL GA + ++ G T L +A N ++ LL+ G
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 248
Score = 78.9 bits (195), Expect = 3e-15
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 31/210 (14%)
Query: 536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH-----RDVCEILLENEADQDHIDKSG 590
VV ILL+ GA ++ + TPL + + +++ ++LLE A+ + D +G
Sbjct: 47 NIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG 106
Query: 591 RTPLWAAAS--MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID--VVNQLLDRG 646
TPL A S S V LL GA V+ +++G +L + ID ++ L+D+G
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG 166
Query: 647 ------------MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
+ G ++ +D G+TPLHYA + E + LL+ GA
Sbjct: 167 VDINAKNRVNYLLSYGV--------PINI--KDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216
Query: 695 KVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
+ V+ G PL +A + + + ++ L
Sbjct: 217 NPNLVNKYGDTPLHIAILNNNKEIFKLLLN 246
Score = 77.4 bits (191), Expect = 8e-15
Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 36/238 (15%)
Query: 391 VDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA-----VVKLLLQSGADVNCSDMGGR 445
+D V+ILL+ GA+IN + TPL S ++ +VKLLL+ GA+VN D G
Sbjct: 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI 107
Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD--IVS 503
T L A + +V+ LL GA+VN +S+G L D I+
Sbjct: 108 TPLLYAI-------SKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILK 160
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV 563
+++ DIN ++ V+ LL G ++ +D G TPL
Sbjct: 161 LLIDKGVDINAKNR----------------------VNYLLSYGVPINIKDVYGFTPLHY 198
Query: 564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
A + + + + LL+ A+ + ++K G TPL A + LLL G + TI
Sbjct: 199 AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256
Score = 56.2 bits (136), Expect = 4e-08
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 349 KLCAENNINLLKTFLKSCEALDLELVD---KHGQTALNVAAHQGFVDAVQILLEAGANIN 405
+ + NLL +L+S + +DL+++ G +N + V LL G IN
Sbjct: 135 NIKNSDGENLLHLYLESNK-IDLKILKLLIDKG-VDINAK------NRVNYLLSYGVPIN 186
Query: 406 HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
D G+TPL A + + VK LL GA+ N + G T L A + E
Sbjct: 187 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE------- 239
Query: 466 LCVVKLLLAAGAHVNAADS 484
+ KLLL G +
Sbjct: 240 --IFKLLLNNGPSIKTIIE 256
Score = 43.1 bits (102), Expect = 7e-04
Identities = 45/133 (33%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 635 NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE-----EVCRAL 689
NIDVV LLD G D TPLHY + + E+ + L
Sbjct: 47 NIDVVKILLDNGA--------------DINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92
Query: 690 LEAGAKVDQVDNDGRAPLILAAQD--GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK- 746
LE GA V+ DN+G PL+ A Y +VE +L ANVN K+ DG L + ++
Sbjct: 93 LEYGANVNAPDNNGITPLLYAISKKSNSYSIVE-YLLDNGANVNIKNSDGENLLHLYLES 151
Query: 747 NVTKLSFWYLLIQ 759
N L LLI
Sbjct: 152 NKIDLKILKLLID 164
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 82.2 bits (202), Expect = 2e-17
Identities = 56/144 (38%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
L L H+ A D +GR L ++A G IV +L AD+N +D DG T L ++AL
Sbjct: 57 LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN 116
Query: 530 VPSSDGYAKVVSILLEKGAKVD---HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
+G +V +LLE GA +D D +G TPL AA G D+ E+LLE AD +
Sbjct: 117 GNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR 176
Query: 587 DKSGRTPLWAAASMGHASCVALLL 610
+ G T L AA G V LLL
Sbjct: 177 NSYGVTALDPAAKNGRIELVKLLL 200
Score = 82.2 bits (202), Expect = 2e-17
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 18/211 (8%)
Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
+ + L + L + D GR PL +AAS G V LLL GA
Sbjct: 38 KLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGA 97
Query: 615 YVDTIDAEGRTVLSVAAAQGN-----IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC 669
V+ DA+G T L +AA GN I+V LL+ G L RD
Sbjct: 98 DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN-----------NLRDED 146
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G TPLH+AA+ G ++ LLEAGA + ++ G L AA++G LV++ L+ +
Sbjct: 147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD--KGL 204
Query: 730 VNQKSHDGRTALRVNMKNVTKLSFWYLLIQP 760
+ + + LI
Sbjct: 205 HLSLLKFNLEGVANANVSKRNILNLTSLIIA 235
Score = 79.1 bits (194), Expect = 3e-16
Identities = 62/161 (38%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 395 QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454
+ L ++ D +G PL SA+ G +VKLLL SGADVN D G T L AA
Sbjct: 57 LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN 116
Query: 455 GHLEVTIVLGPLCVVKLLLAAGAH---VNAADSEGRTALIASAYMGHADIVSSILEYDAD 511
G+ G + V KLLL AGA N D +G T L +A G ADIV +LE AD
Sbjct: 117 GNPP----EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD 172
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
N +++ G TAL +A +G ++V +LL+KG +
Sbjct: 173 PNSRNSYGVTALDPAAK-----NGRIELVKLLLDKGLHLSL 208
Score = 67.5 bits (164), Expect = 2e-12
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 338 MFDSKNQSVLHKLCAENNINLLKTF----LKSCEALDLELVDKHGQTALNVAAHQGFVDA 393
+ S L E + + LK L D G+ L+ AA +G
Sbjct: 29 LDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKI 88
Query: 394 VQILLEAGANINHTDCEGWTPLRSAS-----WGGHSAVVKLLLQSGA---DVNCSDMGGR 445
V++LL +GA++N D +G TPL A+ G+ V KLLL++GA N D G
Sbjct: 89 VKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN 148
Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
T L AA G + +V+LLL AGA N+ +S G TAL +A G ++V +
Sbjct: 149 TPLHWAALNGDAD---------IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL 199
Query: 506 LEY 508
L+
Sbjct: 200 LDK 202
Score = 54.8 bits (131), Expect = 4e-08
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 17/122 (13%)
Query: 369 LDLELVDKHGQTALNVAAHQG-----FVDAVQILLEAGA---NINHTDCEGWTPLRSASW 420
D+ D G T L++AA G ++ ++LLEAGA N D +G TPL A+
Sbjct: 97 ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL 156
Query: 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480
G + +V+LLL++GAD N + G TAL AA G +E +VKLLL G H++
Sbjct: 157 NGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE---------LVKLLLDKGLHLS 207
Query: 481 AA 482
Sbjct: 208 LL 209
Score = 49.1 bits (116), Expect = 3e-06
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFL------KSCEALDLELVDKHGQTALNVAAHQG 389
+ D+ + LH N + + L D+ G T L+ AA G
Sbjct: 99 VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG 158
Query: 390 FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
D V++LLEAGA+ N + G T L A+ G +VKLLL G
Sbjct: 159 DADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203
Score = 39.8 bits (92), Expect = 0.004
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSE 943
AA G D V LLL GADP + G A AAK+G +++LL
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLS 207
Score = 32.1 bits (72), Expect = 1.3
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
+ + + L E L + D DGR PL AA G +V+
Sbjct: 33 NPSDKKLNLYLELALLPAASLSE-LLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVK- 90
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLL 762
L A+VN K DG T L + N + + LL
Sbjct: 91 LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL 131
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 79.2 bits (195), Expect = 3e-15
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 35/269 (13%)
Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
T L A G V++ ++ GA+INH + + PL +A G ++KLL+ +G D
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD--- 93
Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCV----VKLLLAAGAHVNAADSEGRTALIASAY 495
T +L C+ +K +L G VN D+E +T L +
Sbjct: 94 --------------------TSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIK 133
Query: 496 MGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR 555
G + + + EY AD+N +D++G + ++ + ++ +LLEKGA + +D
Sbjct: 134 KGDLESIKMLFEYGADVNIEDDNGCYPIHIA-----IKHNFFDIIKLLLEKGAYANVKDN 188
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
G +PL AA G ++L+++ + K+G TPL A + H LL A
Sbjct: 189 NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA--IIHNRSAIELLINNAS 246
Query: 616 VDTIDAEGRTVLSVAAAQG-NIDVVNQLL 643
++ D +G T L A +ID+++ LL
Sbjct: 247 INDQDIDGSTPLHHAINPPCDIDIIDILL 275
Score = 78.9 bits (194), Expect = 3e-15
Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 42/326 (12%)
Query: 387 HQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGR 445
+ G ++A++ +++ N IN + E TPL A G + +V+L ++ GAD+N +
Sbjct: 10 YSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIP 69
Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
L A I +G ++KLL+ N D T+++ + D++ +I
Sbjct: 70 HPLLTA---------IKIGAHDIIKLLI-----DNGVD----TSILPIPCI-EKDMIKTI 110
Query: 506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAA 565
L+ D+N +D + +T L + G + + +L E GA V+ ED G P+ +A
Sbjct: 111 LDCGIDVNIKDAELKTFLHYAI-----KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI 165
Query: 566 FEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRT 625
D+ ++LLE A + D +G +PL AA G +C+ LL+ G ++ G T
Sbjct: 166 KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFT 225
Query: 626 VLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYA-AIEGHEE 684
L A N + L++ I +D G TPLH+A +
Sbjct: 226 PLHNAIIH-NRSAIELLINNASI---------------NDQDIDGSTPLHHAINPPCDID 269
Query: 685 VCRALLEAGAKVDQVDNDGRAPLILA 710
+ LL A + DN G P+ A
Sbjct: 270 IIDILLYHKADISIKDNKGENPIDTA 295
Score = 71.5 bits (175), Expect = 6e-13
Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 35/287 (12%)
Query: 468 VVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527
+V+L + GA +N +++ L+ + +G DI+ +++ D S
Sbjct: 50 IVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD-------------TSI 96
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
L +P ++ +L+ G V+ +D E T L A +G + ++L E AD + D
Sbjct: 97 LPIP--CIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED 154
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG- 646
+G P+ A + LLL GAY + D G + L AA G+ + L+D G
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214
Query: 647 -MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA 705
++ C G+TPLH A I H LL A ++ D DG
Sbjct: 215 HIMNKC----------------KNGFTPLHNAII--HNRSAIELLINNASINDQDIDGST 256
Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLS 752
PL A + L ++A+++ K + G + K + K
Sbjct: 257 PLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDP 303
Score = 70.4 bits (172), Expect = 2e-12
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 25/247 (10%)
Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA 402
+ S+L C E + ++KT L +D+ + D +T L+ A +G ++++++L E GA
Sbjct: 93 DTSILPIPCIEKD--MIKTILDC--GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA 148
Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
++N D G P+ A ++KLLL+ GA N D G + L AA
Sbjct: 149 DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAA---------E 199
Query: 463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTA 522
G +KLL+ G H+ G T L + H +L +A IN QD DG T
Sbjct: 200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII--HNRSAIELLINNASINDQDIDGSTP 257
Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD------VCEIL 576
L A+ P ++ ILL A + +D +G P+ A ++D + +
Sbjct: 258 LH-HAINPPCD---IDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAV 313
Query: 577 LENEADQ 583
L EAD+
Sbjct: 314 LIKEADK 320
Score = 63.8 bits (155), Expect = 2e-10
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 39/237 (16%)
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
+C+ S D + I+ KG ++ E TPL+ A G + E+ +++ AD +HI+
Sbjct: 7 MCIYSGD-IEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHIN 65
Query: 588 KSGRTPLWAAASMGHASCVALLLF-----------------------WGAYVDTIDAEGR 624
PL A +G + LL+ G V+ DAE +
Sbjct: 66 TKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELK 125
Query: 625 TVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEE 684
T L A +G+++ + L + G D D+ G P+H A +
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGA--------------DVNIEDDNGCYPIHIAIKHNFFD 171
Query: 685 VCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ + LLE GA + DN+G +PL AA+ G Y +++ ++ + ++ K +G T L
Sbjct: 172 IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPL 227
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 77.6 bits (191), Expect = 2e-14
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 406 HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
H D + L + + G++A+++ LL++ D + D GRT L AA G+ +
Sbjct: 520 HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYED------- 572
Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
CV+ +LL +V+ D+ G TAL + H I IL + A I+ G
Sbjct: 573 -CVL-VLLKHACNVHIRDANGNTALWNAISAKHHKIFR-ILYHFASISDPHAAG------ 623
Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
LC + + LL++G VD ED +G T L VA E H D+ +L+ N AD D
Sbjct: 624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683
Score = 69.1 bits (169), Expect = 7e-12
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
D + +D A ++ + +S G A ++ LL+ D D +G TPL +AA +G+
Sbjct: 514 GDNGGEHDDPNMASNLLTV---ASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGY 570
Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSV 629
D +LL++ + D +G T LW A S H +L + + D +L
Sbjct: 571 EDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCT 628
Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
AA + ++ + +LL +G L+ D+ G T L A E H ++ R L
Sbjct: 629 AAKRNDLTAMKELLKQG--------------LNVDSEDHQGATALQVAMAEDHVDMVRLL 674
Query: 690 LEAGAKVDQVDND 702
+ GA VD+ + D
Sbjct: 675 IMNGADVDKANTD 687
Score = 68.4 bits (167), Expect = 1e-11
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 31/214 (14%)
Query: 315 KQFLK-TKEVSDTPCSDTPVSRITMFDSKNQ-SVLHKLCAENNINLLKTFLKSCEALDLE 372
K FL+ KE+ D D D N S L + + N LL+ LK+ LD +
Sbjct: 495 KNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKA--KLDPD 552
Query: 373 LVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432
+ D G+T L++AA +G+ D V +LL+ N++ D G T L +A H + ++L
Sbjct: 553 IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYH 612
Query: 433 --------SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS 484
+ D+ C TA + L +K LL G +V++ D
Sbjct: 613 FASISDPHAAGDLLC------TAAKR-------------NDLTAMKELLKQGLNVDSEDH 653
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+G TAL + H D+V ++ AD+++ + D
Sbjct: 654 QGATALQVAMAEDHVDMVRLLIMNGADVDKANTD 687
Score = 57.2 bits (138), Expect = 3e-08
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
+V ++L +N +H D + + L AS G+A+ + LL D D++GRT L +A
Sbjct: 508 NVGDLLGDN--GGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIA 565
Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
A++G D V LL C + RD G T L A H ++ R L
Sbjct: 566 ASKGYEDCVLVLLKH----AC----------NVHIRDANGNTALWNAISAKHHKIFRILY 611
Query: 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
+ D + L AA+ ++ L+Q NV+ + H G TAL+V M
Sbjct: 612 HFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAE 665
Score = 48.3 bits (115), Expect = 2e-05
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 878 LGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+G SK + IAA +G+EDCV +LL + + D G A A + H + R+L
Sbjct: 553 IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYH 612
Query: 938 YADDSEYFVHYYYYYNSAKSGHETVLR-LLKQ 968
+A S+ +AK T ++ LLKQ
Sbjct: 613 FASISDPHAAGDLLCTAAKRNDLTAMKELLKQ 644
Score = 35.6 bits (82), Expect = 0.16
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
G+ + AA+ ++ LL G + DH G A +VA H ++RLL
Sbjct: 623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674
Score = 35.2 bits (81), Expect = 0.18
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 902 LLHYGADPKHSDHCGRNAFRVAAKSGHE-TVLRLLKQYADDSEYFVHY------YYYYNS 954
LL DP D GR +AA G+E VL LLK + VH +N+
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-----VHIRDANGNTALWNA 598
Query: 955 AKSGHETVLRLLKQYA 970
+ H + R+L +A
Sbjct: 599 ISAKHHKIFRILYHFA 614
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 74.3 bits (182), Expect = 8e-14
Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 19/256 (7%)
Query: 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
Q AL A G +D + LL+ G N N +G +P++ A S +KLL++ GA +
Sbjct: 3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD 62
Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN-AADSEGRTALIASAYMG 497
+ L A + G + V+ LL G + +G T L + +
Sbjct: 63 VKYPDIESELHDA---------VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK 113
Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
DI+ ++ AD + + D + L L V D K + +L++ A +D ED G
Sbjct: 114 KLDIMKLLIARGADPDIPNTDKFSPLH---LAVMMGD--IKGIELLIDHKACLDIEDCCG 168
Query: 558 MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR-TPLWAAASMGHASCVALLLFWGA-- 614
TPL++A +G +C++LL++ A+ D+ K+G L A V L + GA
Sbjct: 169 CTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228
Query: 615 -YVDTIDAEGRTVLSV 629
+ I+ E T+L +
Sbjct: 229 NIMFMIEGEECTILDM 244
Score = 69.2 bits (169), Expect = 3e-12
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 21/241 (8%)
Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546
+ AL + G DI +L+ + N + DG + + L + D ++ + +L++
Sbjct: 3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIK---LAMKFRD--SEAIKLLMKH 57
Query: 547 GAKVDHEDREGMTPLLVAAFEGH-RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
GA D + + + L A EG + V E+L + D K G TPL A +
Sbjct: 58 GAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDI 117
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
+ LL+ GA D + + + L +A G+I + L+D + ++
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH----------KACLDIE--- 164
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR-APLILAAQDGHYHLVEMFLE 724
D CG TPL A +G +C+ LL++GA +D +G A L A ++ +V +F++
Sbjct: 165 -DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223
Query: 725 Q 725
+
Sbjct: 224 R 224
Score = 50.4 bits (120), Expect = 3e-06
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
+F + LH ++++K + D+ DK + L++A G + +++L
Sbjct: 97 VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF--SPLHLAVMMGDIKGIELL 154
Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN-CSDMGGRTALRAAAWGGH 456
++ A ++ DC G TPL A G A+ K+LL SGA+++ G AL A
Sbjct: 155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK 214
Query: 457 LEVTIVLGPLCVVKLLLAAGAHVN 480
++ +V+L + GA N
Sbjct: 215 ID---------IVRLFIKRGADCN 229
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 60.3 bits (147), Expect = 9e-12
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFL 723
G T LH AAI G E+ + LLE G +++ D DG L +AA++G+ ++++ L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 52.2 bits (126), Expect = 8e-09
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
G T L AA G ++ + LLE D + D+ G T L AA G+ + LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 51.9 bits (125), Expect = 1e-08
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
TAL+ AA G ++ V+ LLE G +IN TD +G T L A+ G+ V+KLLL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 49.2 bits (118), Expect = 8e-08
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
G T L A+ G +VK LL+ G D+N +D G TAL AA G+LEV +L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 48.8 bits (117), Expect = 1e-07
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
GRT L AA G +++V LL++G +D D G T LH AA G+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKG--------------VDINRTDEDGNTALHIAAENGN 46
Query: 683 EEVCRALL 690
EV + LL
Sbjct: 47 LEVLKLLL 54
Score = 46.1 bits (110), Expect = 1e-06
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+ AA G + V+ LL G D +D G A +AA++G+ VL+LL
Sbjct: 5 LHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 44.2 bits (105), Expect = 5e-06
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
GRTAL AA G LE+ VK LL G +N D +G TAL +A G+ +++
Sbjct: 1 GRTALHKAAISGRLEL---------VKYLLEKGVDINRTDEDGNTALHIAAENGNLEVL 50
Score = 42.6 bits (101), Expect = 2e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
GRT L AA G V LL G ++ D +G T L +AA GN++V+ LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 40.3 bits (95), Expect = 1e-04
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
GRTAL +A G ++V LLEKG ++ D +G T L +AA G+ +V ++LL
Sbjct: 1 GRTALHKAA-----ISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 39.5 bits (93), Expect = 2e-04
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
GRTAL +A G ++V +LE DIN+ D DG TAL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTAL 38
Score = 38.0 bits (89), Expect = 9e-04
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL 398
+ LHK + L+K L+ +D+ D+ G TAL++AA G ++ +++LL
Sbjct: 3 TALHKAAISGRLELVKYLLEK--GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 29.5 bits (67), Expect = 0.75
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
GR L AA G LV+ LE ++N+ DG TAL
Sbjct: 1 GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTAL 38
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 66.8 bits (163), Expect = 3e-11
Identities = 64/218 (29%), Positives = 95/218 (43%), Gaps = 18/218 (8%)
Query: 370 DLELVDKH-GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
D+ + D+H G TAL+ A ++LL GAN+N D +PL A + +V
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVH 218
Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS-EGR 487
+LL++GA + D G T L H+ V ++KLLL G VNA G
Sbjct: 219 ILLENGASTDARDKCGNTPL-------HISVGYCKD-YDILKLLLEHGVDVNAKSYILGL 270
Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS-ILLEK 546
TAL +S + + +LEY ADIN ++ T LS + + ++S I L K
Sbjct: 271 TALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLK 328
Query: 547 GAKVDHEDREGMTPLLVAAFEGH-----RDVCEILLEN 579
K D ++ EG + +D CE L
Sbjct: 329 RIKPDIKNSEGFIDNMDCITSNKRLNQIKDKCEDELNR 366
Score = 62.2 bits (151), Expect = 6e-10
Identities = 74/321 (23%), Positives = 121/321 (37%), Gaps = 64/321 (19%)
Query: 391 VDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA 450
+D V+ LL G N+N D TPL + +K +++S CS A++
Sbjct: 50 LDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRS--INKCSVFYTLVAIKD 107
Query: 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA 510
A ++E+ K++L + + A+I +L Y A
Sbjct: 108 AFNNRNVEI---------FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA 158
Query: 511 DINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
DIN +D + G TAL + + + ++ +LL GA V+ D+ +PL A +
Sbjct: 159 DINMKDRHKGNTALHYA-----TENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYN 213
Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSV 629
+ + ILLEN A D DK G TPL H S
Sbjct: 214 KPIVHILLENGASTDARDKCGNTPL-------HISVGYCK-------------------- 246
Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
+ D++ LL+ G+ + + G T LH + E + L
Sbjct: 247 -----DYDILKLLLEHGVDVNAKSYIL-------------GLTALHSSIKS--ERKLKLL 286
Query: 690 LEAGAKVDQVDNDGRAPLILA 710
LE GA ++ +++ PL A
Sbjct: 287 LEYGADINSLNSYKLTPLSSA 307
Score = 56.0 bits (135), Expect = 7e-08
Identities = 64/292 (21%), Positives = 109/292 (37%), Gaps = 54/292 (18%)
Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCV-PSSDGYAKVVSILLEKGAKVDHEDR--- 555
D+V S+L ++NQ D+ T L + +C P+ G +++ + + V +
Sbjct: 51 DVVKSLLTRGHNVNQPDHRDLTPLHI--ICKEPNKLGMKEMIRSINKC--SVFYTLVAIK 106
Query: 556 --------EGMTPLLVAAFEGHRD-----VCEI-------------LLENEADQDHIDK- 588
E +L ++ + + + LL AD + D+
Sbjct: 107 DAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRH 166
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
G T L A LLL +GA V+ D + L A N +V+ LL+ G
Sbjct: 167 KGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG-- 224
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE-EVCRALLEAGAKVD-QVDNDGRAP 706
S D RD CG TPLH + + ++ + LLE G V+ + G
Sbjct: 225 ----------ASTD--ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA 272
Query: 707 LILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLI 758
L + + L +Y A++N + T L +K ++ +LI
Sbjct: 273 LHSSIKSER---KLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI 321
Score = 33.3 bits (76), Expect = 0.70
Identities = 59/286 (20%), Positives = 109/286 (38%), Gaps = 44/286 (15%)
Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNII 765
PL A + + +V+ L + NVNQ H T L + K KL ++ I
Sbjct: 40 PLHQAVEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRS----IN 94
Query: 766 LSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLD 825
S+F T+ + F+ N I + IIL + + +D
Sbjct: 95 KCSVF-YTLVAIKDAFNNRNVEIFK---------------------IILTNRYKNIQTID 132
Query: 826 VKH-CTKRYLCSLNDG----HLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGS 880
+ + K + L + D++ + + ++A+ AT+ R T + + G+
Sbjct: 133 LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA 192
Query: 881 S----KVGEKISI--AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHE-TVLR 933
+ + A + ++ V +LL GA D CG ++ + +L+
Sbjct: 193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILK 252
Query: 934 LLKQYADD---SEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVV 976
LL ++ D Y + ++S KS E L+LL +Y DI +
Sbjct: 253 LLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEYGADINSL 296
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 51.0 bits (123), Expect = 1e-08
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDN 701
G TPLH AA GH EV + LLEAGA V+ D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 42.2 bits (100), Expect = 2e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTD 408
G T L++AA G ++ V++LLEAGA++N D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 40.6 bits (96), Expect = 6e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
+G TPL A+ GH VVKLLL++GADVN D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 39.8 bits (94), Expect = 1e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+G TPL +AA GH +V ++LLE AD + DK
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 38.3 bits (90), Expect = 3e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDN 517
+G T L +A GH ++V +LE AD+N +D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 36.8 bits (86), Expect = 0.001
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTID 620
G TPL AA GH V LLL GA V+ D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 36.4 bits (85), Expect = 0.002
Identities = 22/40 (55%), Positives = 22/40 (55%), Gaps = 9/40 (22%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
G T L AA GHLEV VKLLL AGA VNA D
Sbjct: 2 GNTPLHLAARNGHLEV---------VKLLLEAGADVNARD 32
Score = 36.0 bits (84), Expect = 0.003
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDH 914
+AA+ GH + V+LLL GAD D
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNARDK 33
Score = 33.3 bits (77), Expect = 0.023
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
DG PL LAA++GH +V++ L + A+VN +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLL-EAGADVNARDK 33
Score = 32.1 bits (74), Expect = 0.056
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRG 646
+G T L +AA G+++VV LL+ G
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAG 25
Score = 31.0 bits (71), Expect = 0.15
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR 555
DG T L ++A G+ +VV +LLE GA V+ D+
Sbjct: 1 DGNTPLHLAARN-----GHLEVVKLLLEAGADVNARDK 33
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 58.2 bits (141), Expect = 1e-08
Identities = 64/282 (22%), Positives = 123/282 (43%), Gaps = 47/282 (16%)
Query: 391 VDAVQILLEAGANINHTDCEGW--TPL------RSASWGGHSAVVKLLLQSGADVNCSDM 442
+ V++L++ GA++N+ +G+ TPL R + +VKLLL+ GAD+N
Sbjct: 50 IKIVKLLIDNGADVNY---KGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTF 106
Query: 443 GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA-DSEGRTAL--IASAYMGHA 499
G + + + ++ +L + LL+ G +VN +S G L ++
Sbjct: 107 NGVSPIVCFIYNSNINNCDML------RFLLSKGINVNDVKNSRGYNLLHMYLESFSVKK 160
Query: 500 DIVSSILEYDADINQQDN-DGRTALSVSALCVPSSDGYAKVVSI-----LLEKGAKVDHE 553
D++ +L + ++ ++ + G T +++ V+SI L++KG ++
Sbjct: 161 DVIKILLSFGVNLFEKTSLYGLTPMNIYL------RNDIDVISIKVIKYLIKKGVNIETN 214
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENE----------ADQDHIDKSGRTPLWAAASMGHA 603
+ + E D +IL + E + DK G PL +A + +
Sbjct: 215 NN-----GSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNY 269
Query: 604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
LL G + + +G TVL+ A GNID++N++L
Sbjct: 270 EAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL 311
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 363 LKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPL 415
L +DL D +G T L++AA G ++ VQ LL+ G ++N D +G T L
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53
Score = 49.3 bits (118), Expect = 9e-08
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 397 LLEAG-ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451
LLE G ++N TD G TPL A+ G +V+ LL+ G D+N D G TAL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 46.2 bits (110), Expect = 9e-07
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 543 LLEKG-AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
LLE G ++ D G TPL +AA G ++ + LL+ D + D G T L
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53
Score = 45.8 bits (109), Expect = 1e-06
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
+ G +D D G TPLH AA G E+ + LL+ G ++ D+DG L LA
Sbjct: 3 EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 43.1 bits (102), Expect = 1e-05
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
LL +NA D G T L +A G ++V +L+ D+N +D+DG TAL
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53
Score = 42.0 bits (99), Expect = 3e-05
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
LL D+N +D G T L AA G LE +V+ LL G +N DS+G T
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALE---------LVQWLLKPGVDLNLRDSDGLT 51
Query: 489 AL 490
AL
Sbjct: 52 AL 53
Score = 38.9 bits (91), Expect = 4e-04
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 689 LLEAG-AKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
LLE G ++ D +G PL LAA+ G LV+ L+ ++N + DG TAL
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTAL 53
Score = 36.6 bits (85), Expect = 0.002
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
++ D G T L +AA G +++V LL G +D RD+ G T L
Sbjct: 9 LNATDGNGNTPLHLAAKYGALELVQWLLKPG--------------VDLNLRDSDGLTALD 54
Query: 676 YA 677
A
Sbjct: 55 LA 56
Score = 33.5 bits (77), Expect = 0.030
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 576 LLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
LLE+ D + D +G TPL AA G V LL G ++ D++G T L +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 33.5 bits (77), Expect = 0.035
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 509 DADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVA 564
D+N D +G T L ++A G ++V LL+ G ++ D +G+T L +A
Sbjct: 6 PIDLNATDGNGNTPLHLAAKY-----GALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 32.7 bits (75), Expect = 0.061
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVA 923
+AA+ G + V+ LL G D D G A +A
Sbjct: 22 LAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 28.9 bits (65), Expect = 1.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVA 385
D + LH + L++ LK +DL L D G TAL++A
Sbjct: 13 DGNGNTPLHLAAKYGALELVQWLLK--PGVDLNLRDSDGLTALDLA 56
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 56.8 bits (137), Expect = 5e-08
Identities = 35/107 (32%), Positives = 48/107 (44%)
Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
+ILL GA+ N D +G TPL A GH VV++LL+ GAD D G+T L A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
G EV +L L A A ++ + + + H D
Sbjct: 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISSHHPD 204
Score = 56.1 bits (135), Expect = 7e-08
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG 634
ILL AD + D GRTPL A + GH V +LL +GA +D +G+T L +A G
Sbjct: 100 ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG 159
Query: 635 NIDVVNQLLDR 645
+VV QLL R
Sbjct: 160 FREVV-QLLSR 169
Score = 56.1 bits (135), Expect = 7e-08
Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
L+V LC ++ G A ILL GA + D +G TPL +A GH V +LLE AD
Sbjct: 82 LTVE-LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD 140
Query: 583 QDHIDKSGRTPLWAAASMGHASCVALLL 610
+DK G+TPL A G V LL
Sbjct: 141 PTLLDKDGKTPLELAEENGFREVVQLLS 168
Score = 53.7 bits (129), Expect = 4e-07
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476
+AS G + ++LL GAD NC D GRT L A GH++ VV++LL G
Sbjct: 90 AAS--GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQ---------VVRVLLEFG 138
Query: 477 AHVNAADSEGRTALIASAYMGHADIVSSILEY 508
A D +G+T L + G ++V + +
Sbjct: 139 ADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170
Score = 53.7 bits (129), Expect = 4e-07
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
TG D RD G TPLH A GH +V R LLE GA +D DG+ PL LA ++G
Sbjct: 103 TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE 162
Query: 718 LVEMFL 723
+V++
Sbjct: 163 VVQLLS 168
Score = 50.7 bits (121), Expect = 4e-06
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 330 DTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEAL----------DLELVDKHGQ 379
TP +T + + V H L E L S +A+ D D G+
Sbjct: 62 ATPDHNLTTEEVIDPVVAHMLTVE-----LCQLAASGDAVGARILLTGGADPNCRDYDGR 116
Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
T L++A G V V++LLE GA+ D +G TPL A G VV+LL
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168
Score = 49.1 bits (117), Expect = 1e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
++LL GA N D +GRT L + GH +V +LE+ AD D DG+T L ++
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE- 156
Query: 529 CVPSSDGYAKVVSILL 544
+G+ +VV +L
Sbjct: 157 ----ENGFREVVQLLS 168
Score = 45.3 bits (107), Expect = 2e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 687 RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK 746
R LL GA + D DGR PL +A +GH +V + LE + A+ DG+T L + +
Sbjct: 99 RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEE 157
Query: 747 N 747
N
Sbjct: 158 N 158
Score = 42.2 bits (99), Expect = 0.001
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 869 SRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH 928
RD R L IA GH VR+LL +GADP D G+ +A ++G
Sbjct: 110 CRDYDGRTPL---------HIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160
Query: 929 ETVLRLLKQYA 939
V++LL +++
Sbjct: 161 REVVQLLSRHS 171
Score = 37.6 bits (87), Expect = 0.038
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 899 VRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
R+LL GADP D+ GR +A +GH V+R+L ++ D
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD 140
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 55.2 bits (133), Expect = 1e-07
Identities = 70/301 (23%), Positives = 117/301 (38%), Gaps = 72/301 (23%)
Query: 468 VVKLLLAAGAHVNAADSEGRTAL--IAS---AYMGHADIVSSILEYDADINQQDNDGRTA 522
+VKL + GA+VN D+E T L I S Y DIV ++E ADIN++++DG T
Sbjct: 53 IVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET- 111
Query: 523 LSVSALCVPSSDGY---AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR---DVCEIL 576
L S+GY +++ ++E GA D++G T L V H ++ ++L
Sbjct: 112 ----PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL 167
Query: 577 LENEAD-QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
LE D H +K L C ++ +D IDA
Sbjct: 168 LEKGVDINTHNNKEKYDTL---------HC-----YFKYNIDRIDA-------------- 199
Query: 636 IDVVNQLLDRGMIL----------------GCLAGGRQTGS---------LDEQHRDNCG 670
D++ +D G I+ L ++ +D D G
Sbjct: 200 -DILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELG 258
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
+ PL+Y+ + ++ LL+ G ++ + G L A ++ + L + N
Sbjct: 259 FNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILN-KKPNK 317
Query: 731 N 731
N
Sbjct: 318 N 318
Score = 53.7 bits (129), Expect = 3e-07
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 538 KVVSILLEKGAKVDHEDREGMTPL--LVAAFEGHR---DVCEILLENEADQDHIDKSGRT 592
+V + + GA V+ D E TPL +++ + ++ D+ +IL+EN AD + + G T
Sbjct: 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET 111
Query: 593 PLWAAASMGHASCVALLLFW---GAYVDTIDAEGRTVLSVAAAQGN---IDVVNQLLDRG 646
PL+ S G+ + + +LLF GA +D +G T+L V + I+++ LL++G
Sbjct: 112 PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG 171
Query: 647 M 647
+
Sbjct: 172 V 172
Score = 50.6 bits (121), Expect = 3e-06
Identities = 64/296 (21%), Positives = 119/296 (40%), Gaps = 30/296 (10%)
Query: 323 VSDTPCSDTPVSRITMFD----SKNQSVLHKLCAENNINL--LKTFLKSCEALDLELVDK 376
SD T I + S+ K ++ + +K F+ ++ +D
Sbjct: 12 FSDNVKLSTVKLLIKSCNPNEIVNEYSIFQKYLQRDSPSTDIVKLFINL--GANVNGLDN 69
Query: 377 HGQTAL-----NVAAHQGFVDAVQILLEAGANINHTDCEGWTP---LRSASWGGHSAVVK 428
T L N+ ++ +D V+IL+E GA+IN + +G TP L S + + ++
Sbjct: 70 EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILL 129
Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA-ADSEGR 487
++++GAD D G T L+ H + I ++KLLL G +N + E
Sbjct: 130 FMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIE-----IIKLLLEKGVDINTHNNKEKY 183
Query: 488 TALIASAYMGHADIVSSILEYDAD----INQQDNDGRTAL--SVSALCVPSSDGYAKVVS 541
L I + IL+ D IN+++ + +++L + ++
Sbjct: 184 DTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILD 243
Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
+ ++ D G PL + +R + E LL+ D + I + G T L+ A
Sbjct: 244 FIF-SYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298
Score = 34.8 bits (80), Expect = 0.26
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 684 EVCRALLEAGAKVDQVDNDGRAPL--ILAAQDGHYHLVEM--FLEQYEANVNQKSHDGRT 739
++ + + GA V+ +DN+ PL IL+ + H++++ L + A++N+K+ DG T
Sbjct: 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET 111
Query: 740 ALRVNMKN--VTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHI 788
L + N + L +I+ + L T+ ++ + +N HI
Sbjct: 112 PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ---SNHHI 159
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 41.0 bits (97), Expect = 4e-05
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVD 697
G TPLH AA G+ EV + LL+ GA ++
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 34.9 bits (81), Expect = 0.006
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
+G TPL A+ G+ VVKLLL GAD+N
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 32.6 bits (75), Expect = 0.036
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANIN 405
G+T L++AA G ++ V++LL+ GA+IN
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 31.8 bits (73), Expect = 0.066
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQD 584
+G TPL +AA G+ +V ++LL+ AD +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 30.6 bits (70), Expect = 0.20
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRG 646
+GRT L +AA GN++VV LLD+G
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKG 25
Score = 30.2 bits (69), Expect = 0.24
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 889 IAAQEGHEDCVRLLLHYGADP 909
+AA+ G+ + V+LLL GAD
Sbjct: 8 LAAENGNLEVVKLLLDKGADI 28
Score = 30.2 bits (69), Expect = 0.27
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADIN 513
+GRT L +A G+ ++V +L+ ADIN
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 28.3 bits (64), Expect = 1.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 590 GRTPLWAAASMGHASCVALLL 610
GRTPL AA G+ V LLL
Sbjct: 2 GRTPLHLAAENGNLEVVKLLL 22
Score = 27.6 bits (62), Expect = 2.1
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
DGR PL LAA++G+ +V++ L A++N
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLL-DKGADIN 29
Score = 26.0 bits (58), Expect = 7.5
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA 481
GRT L AA G+LE VVKLLL GA +NA
Sbjct: 2 GRTPLHLAAENGNLE---------VVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 40.7 bits (96), Expect = 5e-05
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 669 CGWTPLHYAAIEGHEEVCRALLEAGAKVD 697
G TPLH AA G+ E+ + LLE GA ++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 39.5 bits (93), Expect = 1e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINH 406
G T L++AA G ++ V++LLE GA+IN
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 33.8 bits (78), Expect = 0.014
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
+G TPL A+ G+ +VKLLL+ GAD+N
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 33.0 bits (76), Expect = 0.030
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDH 585
+G TPL +AA G+ ++ ++LLE+ AD +
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 31.5 bits (72), Expect = 0.11
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGM 647
+G T L +AA GN+++V LL+ G
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGA 26
Score = 29.9 bits (68), Expect = 0.35
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADIN 513
+G T L +A G+ ++V +LE+ ADIN
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 27.2 bits (61), Expect = 2.7
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA 481
G T L AA G+LE +VKLLL GA +NA
Sbjct: 2 GNTPLHLAARNGNLE---------LVKLLLEHGADINA 30
Score = 27.2 bits (61), Expect = 3.2
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
DG PL LAA++G+ LV++ LE + A++N
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLE-HGADIN 29
Score = 26.8 bits (60), Expect = 4.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKH 911
+AA+ G+ + V+LLL +GAD
Sbjct: 8 LAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 45.8 bits (108), Expect = 8e-05
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 15/204 (7%)
Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
V+ LL G + N TD +G PL AS ++ +V +LL GAD N D +T L +
Sbjct: 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLS- 113
Query: 454 GGHLEVTIVLGPLCVVKLLLAAGAHV-NAADSEGRTALIASAYMGHADIVSSILEYDADI 512
G EV + + LL+ GA + N+ D EG L+A + I+ +
Sbjct: 114 GTDDEV------IERINLLVQYGAKINNSVDEEGCGPLLACTDPSER-VFKKIMSIGFEA 166
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR-- 570
D G+ + + S + A +S +++ G D +G TPL + + +
Sbjct: 167 RIVDKFGKNHIHRHLM---SDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNV 223
Query: 571 DVCEILLENEADQDHIDKSGRTPL 594
D+ +LL + D + +K G +PL
Sbjct: 224 DIINLLLPS-TDVNKQNKFGDSPL 246
Score = 36.6 bits (84), Expect = 0.061
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
+ V LL +G + D +G PL +A+ + + +LL + AD + DK +TPL+
Sbjct: 53 RFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL 112
Query: 598 ASMGHASC--VALLLFWGAYV-DTIDAEG 623
+ + LL+ +GA + +++D EG
Sbjct: 113 SGTDDEVIERINLLVQYGAKINNSVDEEG 141
Score = 32.7 bits (74), Expect = 1.0
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
E LL + D G PL A+ + + VA+LL GA + D + +T L +
Sbjct: 56 EELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT 115
Query: 634 GN--IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691
+ I+ +N L+ G + S+DE+ CG PL A + E V + ++
Sbjct: 116 DDEVIERINLLVQY--------GAKINNSVDEE---GCG--PL-LACTDPSERVFKKIMS 161
Query: 692 AGAKVDQVDNDGRAPLILAAQDGHYHLVE--------MFLEQYEANVNQKSHDGRTALRV 743
G + VD G+ + H HL+ ++ + + ++ HDG T L +
Sbjct: 162 IGFEARIVDKFGKNHI-------HRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHI 214
Query: 744 ----NMKNV 748
+KNV
Sbjct: 215 VCSKTVKNV 223
Score = 31.6 bits (71), Expect = 2.5
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 31/181 (17%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV--VKLLLQ 432
D G L++A+ V +LL GA+ N D + TPL S + + LL+Q
Sbjct: 69 DDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ 128
Query: 433 SGADVN-------------CSDMGGRTALRAAAWGGHLEVTIVLG-------------PL 466
GA +N C+D R + + G + G
Sbjct: 129 YGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKA 188
Query: 467 CVVKLLLAAGAHVNAADSEGRTAL--IASAYMGHADIVSSILEYDADINQQDNDGRTALS 524
+ ++ G + D +G T L + S + + DI++ +L D+N+Q+ G + L+
Sbjct: 189 STISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLT 247
Query: 525 V 525
+
Sbjct: 248 L 248
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 44.3 bits (105), Expect = 3e-04
Identities = 68/271 (25%), Positives = 105/271 (38%), Gaps = 50/271 (18%)
Query: 351 CAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE 410
++ + L+ + L++ D+ G++AL VAA + + LL N++
Sbjct: 25 AERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLL---NLSCRGAV 81
Query: 411 GWTPLRSASWGGHSAV---VKLLLQSGAD------VNCSDMG----GRTALRAAAWGGHL 457
G T L + S AV + LL + N G TAL AA +
Sbjct: 82 GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNY 141
Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAA------------DS--EGRTALIASAYMGHADIVS 503
E +VKLLL GA V A DS G + L A+A +G IV+
Sbjct: 142 E---------IVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVA 192
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV----SILLEKGAKVDH----ED- 554
+ E ADI D+ G T L + + Y ++ + L K+ E
Sbjct: 193 LLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVI 252
Query: 555 --REGMTPLLVAAFEGHRDVCEILLENEADQ 583
+G+TPL +AA EG + + L + Q
Sbjct: 253 LNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQ 283
Score = 42.4 bits (100), Expect = 0.001
Identities = 79/295 (26%), Positives = 111/295 (37%), Gaps = 67/295 (22%)
Query: 421 GGHSAVVKLLLQSGA--DVNCSDMGGRTALRAAAWGG-HLEVTIVLGPLCVVKLLLAAGA 477
G A V L+ ++NC D GR+AL AA +LE+T LLL
Sbjct: 27 RGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTE---------LLLNLSC 77
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD------ND--------GRTAL 523
+ G T L A + + D V +IL + ++ ND G TAL
Sbjct: 78 RG----AVGDTLLHA-ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITAL 132
Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
++A Y ++V +LLE+GA V A D
Sbjct: 133 HLAAHR----QNY-EIVKLLLERGASVP-----------ARA---CGDFFVK-------S 166
Query: 584 DHID--KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQ 641
+D G +PL AAA +G S VALL A + T D+ G T+L + + +
Sbjct: 167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYE 226
Query: 642 LLDRGM---ILGCLAGGRQTGSLDE--QHRDNCGWTPLHYAAIEGHEEVCRALLE 691
L M L L R + L+ H+ TPL AA EG + R L
Sbjct: 227 ELSCQMYNFALSLLDKLRDSKELEVILNHQGL---TPLKLAAKEGRIVLFRLKLA 278
Score = 37.8 bits (88), Expect = 0.030
Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 19/130 (14%)
Query: 575 ILLENEAD-QDHIDKSGRTPLWAAASMG-HASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
L E + + D+ GR+ L+ AA + LLL D L A +
Sbjct: 36 DLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDT-----LLHAIS 90
Query: 633 QGNIDVVNQLL------DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVC 686
+D V +L R LA + T T LH AA + E+
Sbjct: 91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI------TALHLAAHRQNYEIV 144
Query: 687 RALLEAGAKV 696
+ LLE GA V
Sbjct: 145 KLLLERGASV 154
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 44.1 bits (104), Expect = 3e-04
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 468 VVKLLLAAGAHVNAADSEGRTAL---IASAYMGHADIVSSILEYDADINQQDNDGRTALS 524
VV L G ++ DS GRT L I + DI+ + EY D+N+ DN G T L
Sbjct: 299 VVYSFLQPGVKLHYKDSAGRTCLHQYILRHNI-STDIIKLLHEYGNDLNEPDNIGNTVLH 357
Query: 525 --VSALCV-----PSSDGYAK--VVSILLEKGAKVDHEDREGMTPL 561
+S L V P +D + V+ L+ GA + + G TPL
Sbjct: 358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPL 403
Score = 34.9 bits (80), Expect = 0.22
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 391 VDAVQILLEAGANINHTDCEGWTPLRSASWGGH--SAVVKLLLQSGADVNCSDMGGRTAL 448
+ V L+ G +++ D G T L + + ++KLL + G D+N D G T L
Sbjct: 297 ISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVL 356
Query: 449 RAAAWGGHLEVTIVLGP-------LCVVKLLLAAGAHVNAADSEGRTAL-----IASAYM 496
+ L V +L P L V++ L++ GA + A + G T L A YM
Sbjct: 357 H--TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYM 414
Query: 497 GHADIVSSIL 506
+ DI+ ++
Sbjct: 415 YY-DIIDCLI 423
Score = 31.4 bits (71), Expect = 2.7
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 29/142 (20%)
Query: 292 EIKDIPGTLNGLYLWLSQR--LLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHK 349
++K+IP L+ Y+ L++ + FL+ P ++ DS ++ LH+
Sbjct: 277 KVKNIPMILH-SYITLARNIDISVVYSFLQ------------PGVKLHYKDSAGRTCLHQ 323
Query: 350 LCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFV--------------DAVQ 395
+NI+ L DL D G T L+ V D +Q
Sbjct: 324 YILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQ 383
Query: 396 ILLEAGANINHTDCEGWTPLRS 417
L+ GA+I +C G+TPL S
Sbjct: 384 CLISLGADITAVNCLGYTPLTS 405
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 42.5 bits (100), Expect = 4e-04
Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE 485
++K L+++GADVN + + V ++K+L+ +G+ + D +
Sbjct: 68 ILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPE-----ILKILIDSGSSITEEDED 122
Query: 486 GRTALIASAYMGH----ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
G+ L YM + +++ +++ +D D L S + S K+
Sbjct: 123 GKNLL--HMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY-SYILFHSDK---KIFD 176
Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEG 568
L G ++ ++ G + F
Sbjct: 177 FLTSLGIDINETNKSGYNCYDLIKFRN 203
Score = 41.0 bits (96), Expect = 0.001
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 391 VDAVQILLEAGANINH-TDCEGWTPLR---SASWGGHSAVVKLLLQSGADVNCSDMGGRT 446
V+ ++ L+E GA++N T + L S + ++K+L+ SG+ + D G+
Sbjct: 66 VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN 125
Query: 447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD--IVSS 504
L H+ + + V+KLL+ +G D + L S + H+D I
Sbjct: 126 LL-------HMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNIL-YSYILFHSDKKIFDF 177
Query: 505 ILEYDADINQQDNDGRTALSVS 526
+ DIN+ + G +
Sbjct: 178 LTSLGIDINETNKSGYNCYDLI 199
Score = 30.2 bits (68), Expect = 3.6
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDR-EGMTPL---LVAAFEGHRDVCEILLENEADQD 584
C+ +++ L+E GA V+ + R ++ L L ++ +IL+++ +
Sbjct: 58 CLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT 117
Query: 585 HIDKSGRTPL 594
D+ G+ L
Sbjct: 118 EEDEDGKNLL 127
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 43.1 bits (101), Expect = 6e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
L + KL + +N D+ GRT L + Y G+ D+VS +LE A++N ++G T L V
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260
Query: 526 S---ALCVPSSDGYAKVVSILLEKGAKVD 551
+ + + + K++ ILL + +D
Sbjct: 261 AVDRGSVIARRETHLKILEILLREPLSID 289
Score = 40.7 bits (95), Expect = 0.004
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG------- 422
D+ +D G+T L A + G++D V LLE GAN+N G+T L A G
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRE 272
Query: 423 -HSAVVKLLLQSGADVNC 439
H ++++LL+ ++C
Sbjct: 273 THLKILEILLREPLSIDC 290
Score = 39.6 bits (92), Expect = 0.007
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
++ ++ + D + +D GRT L+ A G+ V+ LL GA V+ + + G T L VA
Sbjct: 202 EIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVA 261
Query: 631 AAQGNI 636
+G++
Sbjct: 262 VDRGSV 267
Score = 36.9 bits (85), Expect = 0.046
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE 485
+ KL + D+N D GGRT L A + G+++ +V LL GA+VNA S
Sbjct: 203 IYKLCIPYIEDINQLDAGGRTLLYRAIYAGYID---------LVSWLLENGANVNAVMSN 253
Query: 486 GRTALIASAYMGHA----DIVSSILE 507
G T L + G + ILE
Sbjct: 254 GYTCLDVAVDRGSVIARRETHLKILE 279
Score = 35.7 bits (82), Expect = 0.11
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT 559
+I + Y DINQ D GRT L + GY +VS LLE GA V+ G T
Sbjct: 202 EIYKLCIPYIEDINQLDAGGRTLLYRAIYA-----GYIDLVSWLLENGANVNAVMSNGYT 256
Query: 560 PLLVAAFEG----HRDVCEILLE 578
L VA G R+ +LE
Sbjct: 257 CLDVAVDRGSVIARRETHLKILE 279
Score = 33.0 bits (75), Expect = 0.81
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 684 EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
E+ + + ++Q+D GR L A G+ LV LE ANVN +G T L V
Sbjct: 202 EIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLEN-GANVNAVMSNGYTCLDV 260
Score = 31.5 bits (71), Expect = 2.6
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451
+IN D G T L A + G+ +V LL++GA+VN G T L A
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVA 261
Score = 30.0 bits (67), Expect = 7.9
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL--------ILAAQD 713
D D G T L+ A G+ ++ LLE GA V+ V ++G L ++A ++
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRE 272
Query: 714 GHYHLVEMFLEQ 725
H ++E+ L +
Sbjct: 273 THLKILEILLRE 284
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 42.3 bits (99), Expect = 7e-04
Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 359 LKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSA 418
LK+FL S +A D HG +AL A V V LL AGA N + E PL A
Sbjct: 14 LKSFLSSKDAFK---ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQA 68
Query: 419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
+ + +VK+LL SG D + D G TAL A G+++
Sbjct: 69 ATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQ 108
Score = 34.6 bits (79), Expect = 0.18
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
D G + L A A N+ +V LL+ G + L PLH AA
Sbjct: 27 DVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENE----------------FPLHQAAT 70
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
++ + LL +G Q D+ G L A G+ V++F+++
Sbjct: 71 LEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 116
Score = 30.4 bits (68), Expect = 4.2
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
SAL +D ++V LL GA + + E PL AA + +ILL + D
Sbjct: 32 SALYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGMDDSQ 89
Query: 586 IDKSGRTPLWAAASMGHASCVAL-------LLFWG 613
D G T L+ A G+ V L L+F+G
Sbjct: 90 FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG 124
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 40.3 bits (94), Expect = 0.001
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEI 57
+ RE +L+ L + P + L+ G G+GKT+L +E+
Sbjct: 1 RLVGREEELERLLDALRRARSGGPPS---VLLTGPSGTGKTSLLREL 44
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 38.6 bits (90), Expect = 0.020
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAESSFSQQ-HNLRKKLLAYHFCQSYDLATFSVQNFIQSL 99
LI+G PGSGKTT + + A+ + + + L A+ + ++ + I L
Sbjct: 226 LILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL----SLIDYL 281
Query: 100 VEQFSSSE--SPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIK 152
E+ S EA +++ K LL LL DE+ K + +I
Sbjct: 282 AEELFSQGIAKQLIEAHQELLKTG--KLLL----LLDGLDELEPKNQRALIREIN 330
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 36.9 bits (86), Expect = 0.021
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
LI+G PG+GK+TL K++
Sbjct: 4 LILGPPGAGKSTLAKKLA 21
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 35.7 bits (82), Expect = 0.021
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 41 LIIGGPGSGKTTLCKEI 57
LI G PGSGK+TL K++
Sbjct: 3 LITGPPGSGKSTLAKKL 19
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield
adenosine diphosphates (ADP). This enzyme is required
for the biosynthesis of ADP and is essential for
homeostasis of adenosine phosphates.
Length = 194
Score = 36.1 bits (84), Expect = 0.049
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
L++G PGSGK T + +
Sbjct: 3 LLLGPPGSGKGTQAERLA 20
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 35.0 bits (80), Expect = 0.058
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 41 LIIGGPGSGKTTLCKEI 57
LI+G PGSGKTTL + +
Sbjct: 6 LIVGPPGSGKTTLARAL 22
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer
from ATP to uridine or cytidine to yield UMP or CMP. In
the primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as
5-flurrouridine and cyclopentenyl-cytidine.
Length = 198
Score = 35.2 bits (82), Expect = 0.083
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 42 IIGGPGSGKTTLCKEIV 58
I GG GSGKTT+ +EI+
Sbjct: 4 IAGGSGSGKTTVAEEII 20
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 34.2 bits (79), Expect = 0.16
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY-DLATFSVQNFIQSL 99
++ G GSGKTTL ++I A+ Q + + C+ S+ + +
Sbjct: 4 ILQGEAGSGKTTLLQKIALLWAQGKLPQDF----DFVFFLPCRELSRSGEASLADLL--- 56
Query: 100 VEQFSSSESPFSEAFSTIVE 119
Q+ +P SE ++ I+E
Sbjct: 57 FSQWPEPAAPVSEVWAVILE 76
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 34.7 bits (80), Expect = 0.23
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 37 NGGALIIGGPGSGKTTLCKEIVF 59
N LI+G GSGK+TL K +
Sbjct: 1 NPNMLIVGPSGSGKSTLLKLLAL 23
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 33.3 bits (76), Expect = 0.23
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 38 GGALIIGGPGSGKTTLCKEI 57
L+ G PG+GKTTL + I
Sbjct: 20 KNLLLYGPPGTGKTTLARAI 39
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 33.0 bits (76), Expect = 0.25
Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 37/135 (27%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQS---YD----------- 86
++IG G GKTTL + L + L Y Q+ D
Sbjct: 5 MLIGRSGCGKTTLTQA---------------LNGEELKYKKTQAIEFSDNMIDTPGEYLE 49
Query: 87 -------LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEV 139
L + + +LV+ + S F F+++ I + K D L +D +
Sbjct: 50 NRRFYSALIVTAADADVIALVQDATEPWSVFPPGFASMFNKPVIGIITKID-LAKDEANI 108
Query: 140 FKKALILPLAQIKHP 154
L A +
Sbjct: 109 EMVEEWLNNAGAEKI 123
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 32.8 bits (75), Expect = 0.26
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 41 LIIGGPGSGKTTLCKEI 57
LI G PGSGKTTL KE+
Sbjct: 2 LITGTPGSGKTTLAKEL 18
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 33.3 bits (77), Expect = 0.28
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 42 IIGGPGSGKTTLCKEI 57
I GGP +GKTTL + +
Sbjct: 4 ITGGPSTGKTTLLEAL 19
>gnl|CDD|227030 COG4685, COG4685, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 571
Score = 34.5 bits (79), Expect = 0.28
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 582 DQDHIDKS-GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVN 640
+ +D S P+W A G ++CVAL G G + ++ +D +N
Sbjct: 303 NSASVDASFDFAPVWNAMPAGASACVALPYSHGIA-------GEMLSHISQENKEMDKLN 355
Query: 641 QLLD 644
LD
Sbjct: 356 GALD 359
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 33.6 bits (78), Expect = 0.30
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 40 ALIIGGPGSGKTTLCKEIVF 59
I GG G+GKT L I
Sbjct: 18 IGIFGGSGTGKTVLLGMIAR 37
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC
2.7.4.3. This clade is found only in eukaryotes and
includes human adenylate kinase isozyme 1 (myokinase).
Within the adenylate kinase superfamily, this set
appears specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 33.3 bits (76), Expect = 0.37
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 42 IIGGPGSGKTTLCKEIV 58
I+GGPGSGK T C++IV
Sbjct: 8 IVGGPGSGKGTQCEKIV 24
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 34.2 bits (78), Expect = 0.44
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 582 DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG-NIDVVN 640
D + IDK G T L A S V+LLL G+ V+ G T +++A + NI+++
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLK 503
Query: 641 QLLDRGMILGCL 652
LL L C+
Sbjct: 504 MLLCHKPTLDCV 515
Score = 33.8 bits (77), Expect = 0.46
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 354 NNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWT 413
+ IN+ +LK D+ ++DK G+T L+ A V +LLE+G+++N G+T
Sbjct: 433 STINICLPYLK-----DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYT 487
Score = 32.3 bits (73), Expect = 1.7
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 391 VDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA 450
+ + I L +IN D G T L A ++V LLL+SG+DVN G T +
Sbjct: 432 LSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAI 491
Query: 451 A 451
A
Sbjct: 492 A 492
Score = 31.1 bits (70), Expect = 3.9
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
L + + L +N D G T L + +VS +LE +D+N + N+G T +++
Sbjct: 432 LSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAI 491
Query: 526 S 526
+
Sbjct: 492 A 492
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 32.3 bits (73), Expect = 0.58
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTF----LKSCEALDLELVDKHGQTALNVAA--HQG 389
I +S+ ++ H+ +++ F C A L D GQ +++AA H+
Sbjct: 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEA 73
Query: 390 FVDA--VQILLEAGANINHTD-CEGWTPLRSA 418
+ A + L+E GA+IN + EG T L A
Sbjct: 74 QLAAEIIDHLIELGADINAQEMLEGDTALHLA 105
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 31.8 bits (73), Expect = 0.62
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 41 LIIGGPGSGKTTLCKEI 57
L+ G PG+GKTTL K +
Sbjct: 2 LLYGPPGTGKTTLAKAV 18
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 32.6 bits (75), Expect = 0.69
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 42 IIGGPGSGKTTLCKEIV 58
I GG GSGKTT+ KE+
Sbjct: 13 IAGGSGSGKTTVAKELS 29
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family
includes the NTP binding domain of F1 and V1 H+ATPases,
DnaB and related helicases as well as bacterial RecA
and related eukaryotic and archaeal recombinases. This
group also includes bacterial conjugation proteins and
related DNA transfer proteins involved in type II and
type IV secretion.
Length = 165
Score = 32.1 bits (73), Expect = 0.81
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 41 LIIGGPGSGKTTLCKEI 57
L+ G GSGKTTL ++
Sbjct: 3 LVFGPTGSGKTTLALQL 19
>gnl|CDD|236024 PRK07475, PRK07475, hypothetical protein; Provisional.
Length = 245
Score = 32.2 bits (74), Expect = 0.96
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 647 MILGCLAGGRQTG-------SLDEQHRDNCGWTP----LHYAAIEGHEEVCRALLEAGAK 695
+I L G++ G SL H G P L A +E E R +LE
Sbjct: 114 LIQALLPAGQKVGILTADASSLTPAHLLAVGVPPDTSSLPIAGLEEGGEFRRNILE---N 170
Query: 696 VDQVDNDG-RAPLILAAQD 713
++DN+ ++ AA+
Sbjct: 171 RGELDNEAAEQEVVAAARA 189
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 32.3 bits (74), Expect = 1.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 41 LIIGGPGSGKTTLCKEIV--FPSAE 63
+I GG GSGKTT K +V P E
Sbjct: 148 IISGGTGSGKTTFLKSLVDEIPKDE 172
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 32.3 bits (73), Expect = 1.2
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 469 VKLLLAAGAHVNAADSEGR-TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527
KLL+ GA VN E + T L S G + +L Y ADIN Q ND T + ++
Sbjct: 86 AKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL 145
Query: 528 L 528
+
Sbjct: 146 M 146
Score = 30.0 bits (67), Expect = 6.6
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 468 VVKLLLAAGAHVNA----ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR-TA 522
++ +L GA A +++ LI + + D ++ Y AD+N+ + + T
Sbjct: 48 IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107
Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVA 564
L +S L G K + ILL GA ++ + + +TP+ +A
Sbjct: 108 LYISVL-----HGCLKCLEILLSYGADINIQTNDMVTPIELA 144
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 31.4 bits (72), Expect = 1.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
I G PG GKTTL K+++
Sbjct: 3 FITGPPGVGKTTLVKKVI 20
>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding
protein. Members of this family are found in a range
of archaea and eukaryotes and have hypothesised ATP
binding activity.
Length = 235
Score = 32.0 bits (73), Expect = 1.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 42 IIGGPGSGKTTLCKEI 57
++G GSGKTT +
Sbjct: 1 VVGPAGSGKTTFVGAL 16
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This
subfamily of the adenylate kinase superfamily contains
examples of UMP-CMP kinase, as well as others proteins
with unknown specificity, some currently designated
adenylate kinase. All known members are eukaryotic.
Length = 183
Score = 31.2 bits (71), Expect = 1.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 42 IIGGPGSGKTTLCKEIV 58
++GGPGSGK T C +IV
Sbjct: 4 VLGGPGSGKGTQCAKIV 20
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 32.3 bits (73), Expect = 1.6
Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 30/139 (21%)
Query: 34 PGNNGGALIIGGPGSGKTTLCKEIV----------FPSAESSFSQQHNLRKKLLAYHFCQ 83
P G L+ GG GSGK+TL I F SA + + + +L + Q
Sbjct: 34 PVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWRAQ 93
Query: 84 SYDL------------ATFSV--------QNFIQSLVEQFSSSESPFSEAFSTIVEDESI 123
L AT+S+ + +LV F S S + D+ I
Sbjct: 94 EDPLQDQIVSTYLRPRATYSLVGLTYSNGEGVEHTLVAIFYLKSSDISSYYGVFPVDQDI 153
Query: 124 KALLKSDQLLQDSDEVFKK 142
ALL + D ++
Sbjct: 154 NALLDFLKEGIDKRQIRAA 172
>gnl|CDD|238544 cd01124, KaiC, KaiC is a circadian clock protein primarily found
in cyanobacteria KaiC is a RecA-like ATPase, having
both Walker A and Walker B motifs. A related protein is
found in archaea.
Length = 187
Score = 31.1 bits (71), Expect = 1.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 41 LIIGGPGSGKTTLC 54
L+ GGPG+GKTT
Sbjct: 3 LLSGGPGTGKTTFA 16
>gnl|CDD|184377 PRK13894, PRK13894, conjugal transfer ATPase TrbB; Provisional.
Length = 319
Score = 32.0 bits (73), Expect = 1.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
L+IGG GSGKTTL I+
Sbjct: 152 LVIGGTGSGKTTLVNAII 169
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 28.7 bits (65), Expect = 2.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 36 NNGGALIIGGPGSGKTTL 53
+ G L+ G GSGK+TL
Sbjct: 20 DPKGTLLTGPSGSGKSTL 37
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 30.7 bits (70), Expect = 2.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
I G PG GKTTL +I
Sbjct: 9 FITGRPGVGKTTLVLKIA 26
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 31.4 bits (71), Expect = 2.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAESSFSQQH 70
++GGPGSGK T C++IV +F +H
Sbjct: 47 FVLGGPGSGKGTQCEKIV-----ETFGFKH 71
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 29.9 bits (68), Expect = 2.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 38 GGALIIGGPGSGKTTLCKEIV 58
G ++ G GSGKTTL + +
Sbjct: 5 GIGVLTGESGSGKTTLLRRLA 25
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 31.5 bits (72), Expect = 2.5
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 41 LIIGGPGSGKTTLCKE--IVFPSAES 64
L+IG PGSGKTTL + + FP AE
Sbjct: 115 LVIGPPGSGKTTLLQNSGLKFPLAER 140
>gnl|CDD|220466 pfam09909, DUF2138, Uncharacterized protein conserved in bacteria
(DUF2138). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 552
Score = 31.7 bits (72), Expect = 2.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
P+W A G ++CVAL + WGA G + + A D +N+ LD
Sbjct: 297 APVWQAMPAGASACVALPVDWGAA-------GPLLSKIGAEAAVADALNEALD 342
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 30.9 bits (70), Expect = 2.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAES 64
LI G PG+GKT + ++ A
Sbjct: 27 LITGPPGTGKTIFALQFLYEGARE 50
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 28.5 bits (64), Expect = 2.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
I GG GSGK+T+ K++
Sbjct: 3 AITGGSGSGKSTVAKKLA 20
>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 30.3 bits (69), Expect = 2.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
I G PG GKTTL +I
Sbjct: 4 GITGPPGVGKTTLVLKIA 21
>gnl|CDD|234011 TIGR02782, TrbB_P, P-type conjugative transfer ATPase TrbB. The
TrbB protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbB
is a homolog of the vir system VirB11 ATPase , and the
Flp pilus sytem ATPase TadA [Cellular processes,
Conjugation].
Length = 299
Score = 30.9 bits (70), Expect = 3.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 41 LIIGGPGSGKTTLC 54
L++GG GSGKTTL
Sbjct: 136 LVVGGTGSGKTTLA 149
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette
transport system involved in resistant to organic
solvents. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 235
Score = 30.5 bits (70), Expect = 3.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 42 IIGGPGSGKTTLCKEIV 58
IIG GSGK+TL + IV
Sbjct: 31 IIGPSGSGKSTLLRLIV 47
>gnl|CDD|223437 COG0360, RpsF, Ribosomal protein S6 [Translation, ribosomal
structure and biogenesis].
Length = 112
Score = 29.2 bits (66), Expect = 3.3
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPL---ILAAQDGHYHLV 719
E+ L G ++ +V++ G+ L I ++GHY L+
Sbjct: 23 EKYKGVLTNNGGEIHKVEDWGKRRLAYPIKKLREGHYVLM 62
>gnl|CDD|224586 COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 359
Score = 30.9 bits (70), Expect = 3.6
Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 24/115 (20%)
Query: 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ 69
KFF RE K + L S+P I G GKT+L KE
Sbjct: 2 MKFFDRE----KELEELLKIIESEP--PSIVFIYGRRRVGKTSLLKEF------------ 43
Query: 70 HNLRKKLLAYHFCQSYDLA----TFSVQNFIQSLVEQFSSSESPFSEAFSTIVED 120
+++KL Y Y S +FI++L E + ++D
Sbjct: 44 --IKEKLGIYILVDFYINLRNKRFSSYLDFIEALFEYLEGKIIDEFKYLVKSLKD 96
>gnl|CDD|219158 pfam06745, KaiC, KaiC. This family represents a conserved region
within bacterial and archaeal proteins, most of which
are hypothetical. More than one copy is sometimes found
in each protein. This family includes KaiC, which is
one of the Kai proteins among which direct
protein-protein association may be a critical process
in the generation of circadian rhythms in
cyanobacteria.
Length = 231
Score = 30.3 bits (69), Expect = 3.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAES 64
LI GGPG+GKT + ++ A
Sbjct: 23 LITGGPGTGKTIFGLQFLYNGALE 46
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 30.6 bits (69), Expect = 3.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 41 LIIGGPGSGKTTLCKEI 57
LIIG P GKTTL ++I
Sbjct: 141 LIIGPPQVGKTTLLRDI 157
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 30.2 bits (69), Expect = 3.9
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 41 LIIGG-PGSGKTTLCKEI 57
+ I G PGSGKTT+ + +
Sbjct: 3 ITISGPPGSGKTTVARLL 20
>gnl|CDD|129913 TIGR00833, actII, Transport protein. The
Resistance-Nodulation-Cell Division (RND) Superfamily-
MmpL sub family (TC 2.A.6.5)Characterized members of the
RND superfamily all probably catalyze substrate efflux
via an H+ antiport mechanism. These proteins are found
ubiquitously in bacteria, archaea and eukaryotes. This
sub-family includes the S. coelicolor ActII3 protein,
which may play a role in drug resistance, and the M.
tuberculosis MmpL7 protein, which catalyzes export of an
outer membrane lipid, phthiocerol dimycocerosate
[Transport and binding proteins, Unknown substrate].
Length = 910
Score = 31.1 bits (70), Expect = 4.1
Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 76 LLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPF--------------SEAFSTIVEDE 121
AY + S+Q L + S AF + D
Sbjct: 1 RSAYGIIGVWIATAISLQLLAPLLEDVSYFRLQAELPGGAASSIAVKEMSAAFQEAIRDP 60
Query: 122 SIKALLKSDQLLQDSDEVFKKALILPL-AQIKH 153
I +L+S++ L D D ALI L A I H
Sbjct: 61 KIILVLESNERLGDKDYATYDALIAKLRADIMH 93
>gnl|CDD|233417 TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This
family describes the exodeoxyribonuclease V alpha
subunit, RecD. RecD is part of a RecBCD complex. A
related family in the Gram-positive bacteria separates
in a phylogenetic tree, has an additional N-terminal
extension of about 200 residues, and is not supported as
a member of a RecBCD complex by neighboring genes. The
related family is consequently described by a different
model [DNA metabolism, DNA replication, recombination,
and repair].
Length = 586
Score = 30.9 bits (70), Expect = 4.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLA 78
+ +LI GGPG+GKTT ++ + S +Q LR L A
Sbjct: 159 KSNFSLITGGPGTGKTTTVARLLLALVKQS-PKQGKLRIALAA 200
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 30.7 bits (70), Expect = 4.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 37 NGGALIIGGPGSGKTTL 53
G LI G GSGKTTL
Sbjct: 434 LGHTLIFGPTGSGKTTL 450
>gnl|CDD|222727 pfam14388, DUF4419, Domain of unknown function (DUF4419). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
348 and 454 amino acids in length.
Length = 297
Score = 30.3 bits (69), Expect = 4.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 734 SHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFT-KFSTTNP 786
H+G+ L V + + W L + I ++ ++ DL T FSTT P
Sbjct: 50 DHEGKKELVVEDPGLLYDNDWDELTEEFTEEIQKNIKDPSLRDLITPDFSTTTP 103
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 29.6 bits (67), Expect = 5.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 42 IIGGPGSGKTTLCKEIV 58
++G PG+GK T + IV
Sbjct: 1 LLGPPGAGKGTQAERIV 17
>gnl|CDD|213965 TIGR04352, HprK_rel_A, HprK-related kinase A. A number of protein
families resemble HPr kinase (see TIGR00679) but do not
belong to that system. They include this family, which
appears instead to be the marker for a different type of
gene neighborhood, in which one of the conserved
neighboring proteins resembles (but is distinct from)
PqqD.
Length = 280
Score = 30.0 bits (68), Expect = 5.5
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 37 NGGALII-GGPGSGKTTLC 54
+G ALI+ PGSGK+TLC
Sbjct: 107 DGRALILPAPPGSGKSTLC 125
>gnl|CDD|216619 pfam01637, Arch_ATPase, Archaeal ATPase. This family contain a
conserved P-loop motif that is involved in binding ATP.
This family is almost exclusively found in
archaebacteria and particularly in Methanococcus
jannaschii that encodes sixteen members of this family.
Length = 223
Score = 29.9 bits (68), Expect = 5.6
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGP-GSGKTTLCKEIV 58
FF RE +L E T +++ GP GKT L +E +
Sbjct: 1 FFDREKELKELEEWAERGTYP-------IIVVYGPRRCGKTALLREFL 41
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 29.6 bits (67), Expect = 5.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 41 LIIGGPGSGKTTLCKEI 57
++IG GSGK+TL +++
Sbjct: 5 ILIGSGGSGKSTLARQL 21
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance
to organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 29.9 bits (68), Expect = 5.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 42 IIGGPGSGKTTLCKEIV 58
I+GG GSGK+TL + I+
Sbjct: 39 ILGGSGSGKSTLLRLIL 55
>gnl|CDD|236907 PRK11410, PRK11410, hypothetical protein; Provisional.
Length = 561
Score = 30.4 bits (69), Expect = 6.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 592 TPLWAAASMGHASCVALLLFWGAY 615
P+W A G ++CVAL + WGA
Sbjct: 304 APVWNAMPAGASACVALPVDWGAA 327
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 29.9 bits (68), Expect = 6.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 41 LIIGGPGSGKTTLCK 55
L+IG GSGK+TL K
Sbjct: 34 LLIGPNGSGKSTLLK 48
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and
a cytoplasmic membrane protein MPA2.
Length = 224
Score = 29.4 bits (67), Expect = 6.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 42 IIGGPGSGKTTLCK 55
+IG G+GK+TL +
Sbjct: 53 LIGRNGAGKSTLLR 66
>gnl|CDD|179497 PRK02909, PRK02909, transcriptional activator FlhD; Provisional.
Length = 105
Score = 28.3 bits (64), Expect = 6.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 289 ILREIKDIPGTLNGLYLWLSQRLL 312
+L+EI DI N YL L+QRL+
Sbjct: 6 LLKEIYDI----NLSYLLLAQRLI 25
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 29.5 bits (67), Expect = 6.7
Identities = 12/17 (70%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Query: 38 GGALIIGGP-GSGKTTL 53
G AL++ GP GSGKTTL
Sbjct: 28 GEALVLTGPNGSGKTTL 44
>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.
Length = 505
Score = 30.2 bits (69), Expect = 6.8
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGA-YVDTIDAEGRTVLSVAAAQGNID 637
+ K A + L +G + L VA QGNI
Sbjct: 182 LIKRRWRLALLAL----LLLLLAALGYGLRRLQWTTPAPEPALKVALVQGNIP 230
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 28.5 bits (64), Expect = 7.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 40 ALIIGGPGSGKTTLCKEIV 58
L++G SGKTTL ++++
Sbjct: 3 VLVVGPKDSGKTTLIRKLL 21
>gnl|CDD|222163 pfam13479, AAA_24, AAA domain. This AAA domain is found in a
wide variety of presumed phage proteins.
Length = 201
Score = 29.2 bits (66), Expect = 7.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 40 ALIIGGPGSGKTTLCK 55
LI G PG GKT+L K
Sbjct: 6 VLIYGPPGIGKTSLAK 21
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA
ternary complex to the ribosomal A site by facilitated
release of the deacylated tRNA from the E site. The
reaction requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 28.6 bits (65), Expect = 7.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 42 IIGGPGSGKTTLCKEIV 58
++G G+GK+TL K I
Sbjct: 31 LVGRNGAGKSTLLKLIA 47
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 480
Score = 29.7 bits (67), Expect = 8.1
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 413 TPLRSASWGGHSAVV-----------KLLLQSGADVNCSDMGGRTALRA-AAWGGHLEVT 460
+ W G VV LL+ GA V D G RA AA L T
Sbjct: 7 LTSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGAT 66
Query: 461 IVLGPLC 467
+ LGP
Sbjct: 67 VRLGPGP 73
>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated.
Length = 520
Score = 29.8 bits (67), Expect = 8.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 356 INLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFV 391
INL +L + EAL L + HG +NVA+ G V
Sbjct: 111 INLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV 146
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 29.2 bits (66), Expect = 8.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 42 IIGGPGSGKTTLCKEIV 58
G G+GKTTL + +
Sbjct: 5 FEGIDGAGKTTLIELLA 21
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 29.3 bits (65), Expect = 8.2
Identities = 25/190 (13%), Positives = 54/190 (28%), Gaps = 6/190 (3%)
Query: 40 ALIIGGPGSGKTTLCK--EIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQ 97
+IIG GSGK+ L K ++ + L + F + ++ I+
Sbjct: 2 NVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEIE 61
Query: 98 SLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQ----DSDEVFKKALILPLAQIKH 153
+ F I+E+ + + L + L ++
Sbjct: 62 EFLIDGIRYRYGFELDKEDILEELLYEYRKGEELLFERERSKESFEKSPEKKRELRGLRE 121
Query: 154 PKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK 213
+ + S + I L ++ L L + +S ++
Sbjct: 122 VLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLR 181
Query: 214 KMFLGFHKLS 223
+ L +S
Sbjct: 182 LLKLLIKGIS 191
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family
are known or believed to be adenylate kinase. However,
some members accept other nucleotide triphosphates as
donors, may be unable to use ATP, and may fail to
complement adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 29.1 bits (66), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
+++G PGSGK T K I
Sbjct: 3 VLLGPPGSGKGTQAKRIA 20
>gnl|CDD|216608 pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This
family groups together integral membrane proteins that
appear to be involved translocation of proteins across a
membrane. These proteins are probably proton channels.
MotA is an essential component of the flageller motor
that uses a proton gradient to generate rotational
motion in the flageller. ExbB is part of the
TonB-dependent transduction complex. The TonB complex
uses the proton gradient across the inner bacterial
membrane to transport large molecules across the outer
bacterial membrane.
Length = 139
Score = 28.4 bits (64), Expect = 8.9
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 222 LSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLH 266
L L +R ++ R A +E LR+ + L +L
Sbjct: 8 EILAQLGFLSFVRLGLAPLIERGAFKEFLRLALEEALDAELRKLE 52
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 28.6 bits (65), Expect = 8.9
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 43 IGGP-GSGKTTLCKEI 57
I GP GSGK+T+ K +
Sbjct: 4 IDGPAGSGKSTVAKLL 19
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 29.2 bits (66), Expect = 9.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 42 IIGGPGSGKTTLCK 55
+ GG GSGK+T+ K
Sbjct: 7 LTGGIGSGKSTVAK 20
>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase. A set of
residues that are unique to G-alpha as compared to its
ancestor the Arf-like family form a ring of residues
centered on the nucleotide binding site. A Ggamma is
found fused to an inactive Galpha in the Dictyostelium
protein gbqA.
Length = 329
Score = 29.5 bits (67), Expect = 9.3
Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 28/122 (22%)
Query: 41 LIIGGPGSGKTTLCK--EIVFPSAESSFSQQHNLRKKLLAYHFC---------------Q 83
L++G SGK+T+ K +I+ FS + + + + Y
Sbjct: 6 LLLGAGESGKSTILKQMKILH---GGGFSDEEREQYRAVIYSNIIRSLKTLLEALENLEI 62
Query: 84 SYDLATFSVQNFIQSLVEQFSSSESPFSEAFS--------TIVEDESIKALLKSDQLLQD 135
+ + + L S FS + D I+ + Q
Sbjct: 63 ESSNSKPENEEIAKKLKSILDSLLDVDETRFSEELAEDIKELWNDPGIQEVYNRSNEFQL 122
Query: 136 SD 137
SD
Sbjct: 123 SD 124
>gnl|CDD|223288 COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA
replication, recombination, and repair].
Length = 655
Score = 29.8 bits (67), Expect = 9.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 36 NNGGALIIGGPGSGKTT 52
+G L++ G GSGKT
Sbjct: 14 PDGPLLVLAGAGSGKTR 30
>gnl|CDD|234034 TIGR02858, spore_III_AA, stage III sporulation protein AA. Members
of this protein are the stage III sporulation protein
AA, encoded by one of several genes in the spoIIIA
locus. It seems that this protein is found in a species
if and only if that species is capable of endospore
formation [Cellular processes, Sporulation and
germination].
Length = 270
Score = 29.2 bits (66), Expect = 9.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 40 ALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKK 75
LII P GKTTL +++ + + SQ KK
Sbjct: 114 TLIISPPQCGKTTLLRDLARILS-TGISQLGLRGKK 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,883,688
Number of extensions: 4846527
Number of successful extensions: 6261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5924
Number of HSP's successfully gapped: 301
Length of query: 978
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 872
Effective length of database: 6,236,078
Effective search space: 5437860016
Effective search space used: 5437860016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.9 bits)