RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9384
(978 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 382 bits (985), Expect = e-124
Identities = 118/402 (29%), Positives = 178/402 (44%), Gaps = 31/402 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ LH ++ ++K L A + + +T L++AA G + + LL+
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLL-QRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
A +N + TPL A+ GH+ +VKLLL++ A+ N + G T L AA GH+E
Sbjct: 69 NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE- 127
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
V LL A +G T L +A G + +LE DA N +G
Sbjct: 128 --------TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
T L V+ +V +LL +G G TPL +AA + +V LL+
Sbjct: 180 LTPLHVAV-----HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
+ G TPL AA GHA VALLL A + + G T L + A +G++ V
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA 294
Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
+ L+ G +D G+TPLH A+ G+ ++ + LL+ A V+
Sbjct: 295 DVLIKHG------------VMVDAT--TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340
Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
G +PL AAQ GH +V + L+ A+ N+ S DG T L
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPL 381
Score = 377 bits (972), Expect = e-122
Identities = 118/372 (31%), Positives = 174/372 (46%), Gaps = 29/372 (7%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
+ G T L+VA+ G + V+ LL+ GA+ N ++ + TPL A+ GH+ V K
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
LLQ+ A VN +T L AA GH +VKLLL A+ N A + G T
Sbjct: 66 LLQNKAKVNAKAKDDQTPLHCAARIGHTN---------MVKLLLENNANPNLATTAGHTP 116
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
L +A GH + V ++LE +A G T L V+A G +V +LLE+ A
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA-----KYGKVRVAELLLERDAH 171
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ + G+TPL VA + D+ ++LL +G TPL AA L
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC 669
L +G + +G T L +AA +G+ ++V LL + + +
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--------------ANGNLGNKS 277
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G TPLH A EGH V L++ G VD G PL +A+ G+ LV+ FL Q++A+
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQAD 336
Query: 730 VNQKSHDGRTAL 741
VN K+ G + L
Sbjct: 337 VNAKTKLGYSPL 348
Score = 374 bits (962), Expect = e-120
Identities = 121/404 (29%), Positives = 180/404 (44%), Gaps = 32/404 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ K ++ LH + + K L +A + K QT L+ AA G + V++LLE
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLL-QNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
AN N G TPL A+ GH V LL+ A C G T L AA G + V
Sbjct: 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
+LLL AH NAA G T L + + + DIV +L + +G
Sbjct: 162 ---------AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
T L ++A +V LL+ G + E +G+TPL +AA EGH ++ +LL
Sbjct: 213 YTPLHIAA-----KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
+A+ + +KSG TPL A GH +L+ G VD G T L VA+ GNI +V
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327
Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
LL A D + G++PLH AA +GH ++ LL+ GA ++V
Sbjct: 328 KFLLQHQ------A--------DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYE--ANVNQKSHDGRTAL 741
+DG PL +A + G+ + ++ + + V +
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417
Score = 349 bits (899), Expect = e-111
Identities = 117/341 (34%), Positives = 160/341 (46%), Gaps = 29/341 (8%)
Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
G + G TPL AS+ GH +VK LLQ GA N S++ T L AA GH E
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE-- 61
Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
V K LL A VNA + +T L +A +GH ++V +LE +A+ N G
Sbjct: 62 -------VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH 114
Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
T L ++A +G+ + V LLEK A ++G TPL VAA G V E+LLE +
Sbjct: 115 TPLHIAA-----REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Query: 581 ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVN 640
A + K+G TPL A + V LLL G + G T L +AA Q ++V
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229
Query: 641 QLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD 700
LL G GS + + G TPLH AA EGH E+ LL A + +
Sbjct: 230 SLLQYG------------GSANAE--SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 701 NDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
G PL L AQ+GH + ++ ++ V+ + G T L
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPL 315
Score = 290 bits (746), Expect = 3e-89
Identities = 103/353 (29%), Positives = 151/353 (42%), Gaps = 34/353 (9%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ + LH E ++ + L EA + K G T L+VAA G V ++LLE
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALL-EKEA-SQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
A+ N G TPL A + +VKLLL G + G T L AA +EV
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
+ LL G NA +G T L +A GHA++V+ +L A+ N + G
Sbjct: 228 ---------ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
T L + A G+ V +L++ G VD R G TPL VA+ G+ + + LL++
Sbjct: 279 LTPLHLVAQE-----GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333
Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
+AD + K G +PL AA GH V LLL GA + + ++G T L++A G I V
Sbjct: 334 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT 393
Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI-------EGHEEV 685
+ L +T + D + EG E +
Sbjct: 394 DVLKVVT---------DETSFVLVS--DKHRMSFPETVDEILDVSEDEGEELI 435
Score = 198 bits (507), Expect = 8e-56
Identities = 66/210 (31%), Positives = 92/210 (43%), Gaps = 19/210 (9%)
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
G G+TPL VA+F GH + + LL+ A + + TPL AA GH
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
LL A V+ + +T L AA G+ ++V LL+ +
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA--------------NPNL 108
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
G TPLH AA EGH E ALLE A + G PL +AA+ G + E+ LE+
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 726 YEANVNQKSHDGRTALRV----NMKNVTKL 751
+A+ N +G T L V N ++ KL
Sbjct: 169 -DAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Score = 59.0 bits (144), Expect = 4e-09
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
AAQ+GH D V LLL GA P G +A + G+ +V +LK D+
Sbjct: 350 QAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Score = 58.7 bits (143), Expect = 5e-09
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
AA+ GH + V+LLL A+P + G +AA+ GH ETVL LL++ A +
Sbjct: 86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145
Query: 944 YF--VHYYYYYNSAKSGHETVLRLL 966
F +H +AK G V LL
Sbjct: 146 GFTPLHV-----AAKYGKVRVAELL 165
Score = 53.7 bits (130), Expect = 2e-07
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AAQEGH + V LLL A+ + G + A+ GH V +L
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Score = 53.3 bits (129), Expect = 2e-07
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
IAA++ + R LL YG G +AA+ GH E V LL + A+
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Score = 53.3 bits (129), Expect = 2e-07
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
+A+ G+ V+ LL + AD G + AA+ GH + V LLK A S+
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376
Query: 944 YF--VHYYYYYNSAKSGHETVLRLLKQYADD 972
+ + + G+ +V +LK D+
Sbjct: 377 GTTPLAI-----AKRLGYISVTDVLKVVTDE 402
Score = 53.3 bits (129), Expect = 3e-07
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
+AA+ G LLL A P + G VA + + V LL +
Sbjct: 152 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 211
Query: 944 YF--VHYYYYYNSAKSGH-ETVLRLLKQYAD 971
+ +H +AK E LL+
Sbjct: 212 GYTPLHI-----AAKQNQVEVARSLLQYGGS 237
Score = 52.1 bits (126), Expect = 5e-07
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
+A+ GH V+ LL GA P S+ +AA++GH E LL+ A +
Sbjct: 20 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79
Query: 944 YF--VHYYYYYNSAKSGHETVLRLL 966
+H +A+ GH +++LL
Sbjct: 80 DQTPLHC-----AARIGHTNMVKLL 99
Score = 51.0 bits (123), Expect = 1e-06
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ AQEGH +L+ +G + G VA+ G+ + V LL+ AD
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Score = 32.9 bits (76), Expect = 0.58
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 906 GADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSEYF--VHYYYYYNSAKSG 958
G G VA+ GH V LL++ A + + +H +A++G
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM-----AARAG 58
Query: 959 HETVLRLL 966
H V + L
Sbjct: 59 HTEVAKYL 66
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 339 bits (873), Expect = e-108
Identities = 68/380 (17%), Positives = 129/380 (33%), Gaps = 33/380 (8%)
Query: 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
L+ D ++VAA +G D V+ L+E G + + G T L A G K
Sbjct: 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAK 70
Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
L G + G+ + A + +V L+ G+
Sbjct: 71 YLASVGEVHSLWH--GQKPIHLAVMANKTD---------LVVALVEGAKER------GQM 113
Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
++ + + + G+TAL Y +++ IL++ GA
Sbjct: 114 PESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGL---GPEYLEMIKILVQLGA 164
Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLE-----NEADQDHIDKSGRTPLWAAASMGHA 603
+D+ TPL+ A +R+ +++++ + D+ +K G + L A +
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224
Query: 604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDE 663
+ G V+ D E L ++ + + +LL + + A G+
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT-TV 283
Query: 664 QHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFL 723
+ AA +EV + L E +V + N G + + + M L
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL 343
Query: 724 EQYEANVNQKSHDGRTALRV 743
A V +S + V
Sbjct: 344 AP-SAPVRTRSRSRARSSAV 362
Score = 276 bits (709), Expect = 8e-85
Identities = 55/391 (14%), Positives = 114/391 (29%), Gaps = 64/391 (16%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D +N +H + + ++ L + ++ G TAL++A G VD + L
Sbjct: 17 DDENMEKIHVAARKGQTDEVR-RLIETGV-SPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
G + G P+ A + +V L++ + G+ EV
Sbjct: 75 VGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECDEREV 126
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG--HADIVSSILEYDADINQQDN 517
+ +G+TAL +G + +++ +++ A +D
Sbjct: 127 ---------------NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLE-----KGAKVDHEDREGMTPLLVAAFEGHRDV 572
T L + + + ++++ ++D+ +++G + L A DV
Sbjct: 172 ADETPLMRAMEF-----RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226
Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA----------- 621
+E D + D PL+ + LL
Sbjct: 227 AMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPD 286
Query: 622 --EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
+ AA +V+ L ++ + N G
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQEKL------------DEVVRS--LNTGAGGAVKRKK 332
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
+ V R L A V ++
Sbjct: 333 KAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 245 bits (629), Expect = 2e-73
Identities = 59/328 (17%), Positives = 108/328 (32%), Gaps = 41/328 (12%)
Query: 428 KLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGR 487
+ + SD + AA G + V+ L+ G + G
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTD---------EVRRLIETGVSPTIQNRFGC 54
Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
TAL + G D + + G+ + ++ + +V L+E
Sbjct: 55 TALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMA-----NKTDLVVALVEGA 107
Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG--HASC 605
+ G P + R+V NE G+T L +G +
Sbjct: 108 KER------GQMPESLLNECDEREV------NEIGSHVKHCKGQTALHWCVGLGPEYLEM 155
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
+ +L+ GA D T L A N + ++ ++D SL +
Sbjct: 156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDT---------VPSKSSLRLDY 206
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
+ G + LH+A + E+V +E G V+ DN+ PL L+ + L + L++
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266
Query: 726 --YEANVNQKSHDGRTALRVNMKNVTKL 751
H+G T L + + +
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFV 294
Score = 53.3 bits (129), Expect = 2e-07
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 15/100 (15%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEYFVH 947
A ED + G D D+ ++ ++ LL++
Sbjct: 217 WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276
Query: 948 YYY--------------YYNSAKSGHETVLRLLKQYADDI 973
Y+ +A + VL+LL++ D++
Sbjct: 277 YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316
Score = 50.3 bits (121), Expect = 2e-06
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEY--- 944
+AA++G D VR L+ G P + G A +A K G +T L S +
Sbjct: 26 VAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ 85
Query: 945 -FVHYYYYYNSAKSGHETVLRLLKQYADDI 973
+H + + ++ L + A +
Sbjct: 86 KPIHL-----AVMANKTDLVVALVEGAKER 110
Score = 48.7 bits (117), Expect = 5e-06
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA ++ ++LL + S + G K V R+
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342
Score = 41.4 bits (98), Expect = 0.001
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 889 IAAQEG--HEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
G + + +++L+ GA P D A + + L L+
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192
Score = 41.0 bits (97), Expect = 0.001
Identities = 12/97 (12%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 889 IAAQEGHEDCVRLLLHY-----GADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD-- 940
A + + + + L++ +++ G + A + +R ++ D
Sbjct: 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN 238
Query: 941 --DSEYF--VHYYYYYNSAKSGHETVLRLLKQYADDI 973
D+E+ ++ S ++ + + L Q D
Sbjct: 239 MEDNEHTVPLYL-----SVRAAMVLLTKELLQKTDVF 270
Score = 40.6 bits (96), Expect = 0.002
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVA 923
++ R+ L A + + V+
Sbjct: 329 KRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 298 bits (765), Expect = 5e-93
Identities = 94/374 (25%), Positives = 142/374 (37%), Gaps = 50/374 (13%)
Query: 370 DLELVDKHGQTALNVAAHQG-FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
L ++ + L AA G + +L N + +D TPL A+ +V+
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75
Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
LLLQ GADV+ D GG L A GH EV +LLL GA VNA D T
Sbjct: 76 LLLQHGADVHAKDKGGLVPLHNACSYGHYEV---------TELLLKHGACVNAMDLWQFT 126
Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
L +A ++ S +L + AD + G++A+ ++ + + ++ + +
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP-----TPELRERLTYEFKGHS 181
Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC--- 605
LL AA E + L E +S T L A + H
Sbjct: 182 ------------LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
LLL GA V+ + + T L VAA + + DV+ L G ++
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG------------AKMNA-- 275
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
D+ G T LH AA+ GH + CR LL G+ + G + + L E
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSE----- 330
Query: 726 YEANVNQKSHDGRT 739
+ D R
Sbjct: 331 -STPMRTSDVDYRL 343
Score = 298 bits (765), Expect = 5e-93
Identities = 86/380 (22%), Positives = 136/380 (35%), Gaps = 58/380 (15%)
Query: 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPL-RSASWGGHSAVVKLLLQSG 434
+ G++AL L + A T L +A G ++ LL
Sbjct: 2 EFGKSAL-------------DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
+ + SD T L AA + + V+LLL GA V+A D G L +
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRI---------VQLLLQHGADVHAKDKGGLVPLHNAC 99
Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
GH ++ +L++ A +N D T L +A +V S+LL GA +
Sbjct: 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK-----NRVEVCSLLLSHGADPTLVN 154
Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
G + + +A R+ G + L AA + V L
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEF-----------KGHSLLQAARE-ADLAKVKKTLALEI 202
Query: 615 YVDTIDAEGRTVLSVAAAQG---NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW 671
T L A A V LL +G + ++
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKG--------------ANVNEKNKDFM 248
Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
TPLH AA H +V L + GAK++ +D+ G+ L AA GH + L Y ++ +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPS 307
Query: 732 QKSHDGRTALRVNMKNVTKL 751
S G TA ++ + V ++
Sbjct: 308 IISLQGFTAAQMGNEAVQQI 327
Score = 294 bits (756), Expect = 1e-91
Identities = 88/378 (23%), Positives = 138/378 (36%), Gaps = 51/378 (13%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ L + N L L + D T L++AA V VQ+LL+
Sbjct: 21 GEYKKDELLEAARSGNEEKLMALLTPLNV-NCHASDGRKSTPLHLAAGYNRVRIVQLLLQ 79
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA+++ D G PL +A GH V +LLL+ GA VN D+ T L AA +E
Sbjct: 80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVE- 138
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
V LLL+ GA + G++A+ + + + + G
Sbjct: 139 --------VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL-----------TYEFKG 179
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR---DVCEIL 576
+ L + + V L + + T L A H V E+L
Sbjct: 180 HSLLQAAR------EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
L A+ + +K TPL AA H + +L GA ++ +D+ G+T L AA G++
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
LL G + D G+T E + +L +
Sbjct: 294 QTCRLLLSYG------S--------DPSIISLQGFTAAQMGN-----EAVQQILSESTPM 334
Query: 697 DQVDNDGRAPLILAAQDG 714
D D L+ A++ G
Sbjct: 335 RTSDVDY--RLLEASKAG 350
Score = 56.0 bits (136), Expect = 3e-08
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEYFVH 947
AA + + LLL +GADP + G++A +A E + K ++ +
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSL-----LQ 184
Query: 948 YYYYYNSAKSGHETVLRLLKQYADDI 973
+ ++ V + L +
Sbjct: 185 A-----AREADLAKVKKTLALEIINF 205
Score = 49.0 bits (118), Expect = 5e-06
Identities = 14/47 (29%), Positives = 16/47 (34%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A GH + LLL +GA D AA V LL
Sbjct: 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Score = 48.6 bits (117), Expect = 6e-06
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
+AA V+LLL +GAD D G A GH E LLK A D
Sbjct: 64 LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123
Query: 944 YF--VHYYYYYNSAKSGHETVLRLL 966
F +H +A V LL
Sbjct: 124 QFTPLHE-----AASKNRVEVCSLL 143
Score = 47.9 bits (115), Expect = 1e-05
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA+ H D + +L +GA D G+ A AA +GH RLL
Sbjct: 253 VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Score = 44.0 bits (105), Expect = 2e-04
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 889 IAAQEGHE---DCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A H LLL GA+ + VAA+ H V+ +L
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
Score = 42.9 bits (102), Expect = 3e-04
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A E + LL + SD +AA +++LL
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77
Score = 39.0 bits (92), Expect = 0.006
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH----ETVLRLLKQYAD 940
AA+E V+ L A A S H + LL++ A+
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 277 bits (710), Expect = 2e-86
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 32/285 (11%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
W+P+ A+ GH ++ L+ G VN + L A GGHL VK
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC---------VK 53
Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
+LL GA VN ++ T L + G D V+ +L++ A + ++D + + +A
Sbjct: 54 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARR- 111
Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSG 590
G+ + V+ L+ G +DH+ TPL +A R + LLE+ AD + K
Sbjct: 112 ----GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQ 166
Query: 591 RTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILG 650
+PL A A LL+ +GA +AEG+ + + + + L+R
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLERE---- 220
Query: 651 CLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
C I+ H ++ + +L K
Sbjct: 221 ----------GPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 242 bits (621), Expect = 1e-73
Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 20/264 (7%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
+H+ + L+ + S + ++ + L+ A G + V+ILL+ GA +N
Sbjct: 7 MHEAAIHGHQLSLRNLI-SQGW-AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
+ TPL +A G V LLLQ GA V + + + AA GH+E
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVE-------- 115
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
V L+A G +++ S T L + V +LE AD+N Q + L
Sbjct: 116 -CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAV 173
Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
A ++ +L++ GA ++ EG P+ + E + ++ LE E +
Sbjct: 174 ART-----ASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLM 226
Query: 587 DKSGRTPLWAAASMGHASCVALLL 610
H L+L
Sbjct: 227 QLCRLRIRKCFGIQQHHKITKLVL 250
Score = 215 bits (551), Expect = 7e-64
Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 20/244 (8%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ + S LH+ C +++ +K L A + V T L A G D V +LL+
Sbjct: 33 TADHVSPLHEACLGGHLSCVK-ILLKHGA-QVNGVTADWHTPLFNACVSGSWDCVNLLLQ 90
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++ + + +P+ A+ GH V L+ G +++ T L A
Sbjct: 91 HGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 149
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
VK LL +GA VN + L A A ++ ++++ AD ++ +G
Sbjct: 150 ---------VKKLLESGADVNQGKG-QDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
+ + + + + + LE+ + + H + +++L
Sbjct: 200 KRPVELVP-------PESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252
Query: 580 EADQ 583
+ Q
Sbjct: 253 DLKQ 256
Score = 175 bits (447), Expect = 1e-49
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 21/199 (10%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
+P+ AA GH+ L+ + I +PL A GH SCV +LL GA V
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ + A+ T L A G+ D VN LL G + ++ +P+H
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV---------------QPESDLASPIHE 107
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA GH E +L+ G +D + PL LA ++ V+ LE A+VN +
Sbjct: 108 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKG 165
Query: 737 GRTAL----RVNMKNVTKL 751
+ L R + + L
Sbjct: 166 QDSPLHAVARTASEELACL 184
Score = 136 bits (344), Expect = 6e-36
Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
S +P+ AA GH + L+ G V+ I A+ + L A G++ V LL G
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-- 59
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
A TPL A + G + LL+ GA V ++D +P+
Sbjct: 60 ----A--------QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIH 106
Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
AA+ GH V + N++ K T L
Sbjct: 107 EAARRGHVECVNSLIAY-GGNIDHKISHLGTPL 138
Score = 52.4 bits (127), Expect = 2e-07
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA+ GH +CV L+ YG + H +A ++ V +LL+ AD
Sbjct: 107 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159
Score = 50.1 bits (121), Expect = 1e-06
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A GH CV++LL +GA A SG + LL
Sbjct: 42 EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
Score = 48.2 bits (116), Expect = 5e-06
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA GH+ +R L+ G + A GH V LLK A
Sbjct: 9 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Score = 46.7 bits (112), Expect = 1e-05
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
A+ E+ LL+ +GAD + + G+ + L++
Sbjct: 172 AVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP-LAQLFLEREGP 222
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 274 bits (704), Expect = 3e-85
Identities = 68/354 (19%), Positives = 122/354 (34%), Gaps = 77/354 (21%)
Query: 384 VAAHQGFVDAVQILLEAGANINHTDCE-----GWTPLRSASWGGHSAVVKLLLQSGADVN 438
+ + L+ G+++ D + G P + G LL + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55
Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
+ + AA GH ++ L++ G VN ++ + L + GH
Sbjct: 56 AVS--DWSPMHEAAIHGHQL---------SLRNLISQGWAVNIITADHVSPLHEACLGGH 104
Query: 499 ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGM 558
V +L++ A +N D T L + G V++LL+ GA V + +
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNAC-----VSGSWDCVNLLLQHGASVQ-PESDLA 158
Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
+P+ AA GH + L+ + DH TPL+ A +CV LL GA V+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN- 217
Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+ +PLH
Sbjct: 218 -----------------------------------------------QGKGQDSPLHAVV 230
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
EE+ L++ GA + +G+ P+ L + L ++FLE+ A++ +
Sbjct: 231 RTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGASLPK 282
Score = 248 bits (635), Expect = 2e-75
Identities = 64/292 (21%), Positives = 114/292 (39%), Gaps = 26/292 (8%)
Query: 351 CAENNINLLKTFLK---SCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHT 407
+ ++ + + ++D + G G LL +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDAV 57
Query: 408 DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLC 467
W+P+ A+ GH ++ L+ G VN + L A GGHL
Sbjct: 58 S--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS--------- 106
Query: 468 VVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527
VK+LL GA VN ++ T L + G D V+ +L++ A + ++D + + +A
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAA 165
Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
G+ + V+ L+ G +DH+ TPL +A R + LLE+ AD +
Sbjct: 166 -----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QG 219
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
K +PL A LL+ +GA +AEG+ + + + + +
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271
Score = 247 bits (632), Expect = 5e-75
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 17/243 (6%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
+ ++ AA G +++ L+ G +N + +PL A GGH + VK+LL+ G
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
A VN T L A G + V LLL GA V +S+ + + +A
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWD---------CVNLLLQHGASVQ-PESDLASPIHEAA 165
Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
GH + V+S++ Y +I+ + + T L ++ V LLE GA V+ +
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-----QQRACVKKLLESGADVN-QG 219
Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
+ +PL ++ +L++ AD + G+ P+ L GA
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGA 278
Query: 615 YVD 617
+
Sbjct: 279 SLP 281
Score = 206 bits (527), Expect = 2e-60
Identities = 57/244 (23%), Positives = 95/244 (38%), Gaps = 20/244 (8%)
Query: 340 DSKN-QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL 398
D+ + S +H+ + L+ + S + ++ + L+ A G + V+ILL
Sbjct: 55 DAVSDWSPMHEAAIHGHQLSLRNLI-SQGW-AVNIITADHVSPLHEACLGGHLSCVKILL 112
Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
+ GA +N + TPL +A G V LLLQ GA V + + AA GH+E
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVE 171
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
V L+A G +++ S T L + V +LE AD+N Q
Sbjct: 172 ---------CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKG 221
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
+ L ++ +L++ GA ++ EG P+ + E L
Sbjct: 222 QDSPLHAVV-----RTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ-LFLER 275
Query: 579 NEAD 582
A
Sbjct: 276 EGAS 279
Score = 200 bits (510), Expect = 6e-58
Identities = 61/251 (24%), Positives = 94/251 (37%), Gaps = 25/251 (9%)
Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
+ S++ H S ++ + + D G I L +
Sbjct: 1 MGSSH-HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPA------GPRDFPGIRLLSNP-L 52
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
+ +P+ AA GH+ L+ + I +PL A GH SCV +LL
Sbjct: 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
GA V+ + A+ T L A G+ D VN LL G A ++
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG------A---------SVQPESDL 157
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
+P+H AA GH E +L+ G +D + PL LA ++ V+ LE A+V
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADV 216
Query: 731 NQKSHDGRTAL 741
NQ + L
Sbjct: 217 NQGK-GQDSPL 226
Score = 119 bits (302), Expect = 5e-30
Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+S S +H+ ++ + L + +++ H T L +A V+ LLE
Sbjct: 154 ESDLASPIHEAARRGHVECVN-SLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
+GA++N +PL + + LL+ GAD + G+ + L
Sbjct: 212 SGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-- 268
Query: 460 TIVLGPLCVVKLLLAAGAHVNAA 482
L GA +
Sbjct: 269 --------AQLFLEREGASLPKP 283
Score = 54.4 bits (132), Expect = 6e-08
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
+ E+ LL+ +GAD + + G+ + L L ++ A
Sbjct: 228 AVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGAS 279
Score = 52.9 bits (128), Expect = 2e-07
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA+ GH +CV L+ YG + H +A ++ V +LL+ AD
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Score = 50.2 bits (121), Expect = 1e-06
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A GH CV++LL +GA A SG + LL
Sbjct: 98 EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
Score = 49.0 bits (118), Expect = 3e-06
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
+A + CV+ LL GAD + ++ E L+ AD ++E
Sbjct: 196 LACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254
Query: 944 YF--VHYYYYYNSAKSGHETVLRLLKQYAD 971
V L L ++ A
Sbjct: 255 GKRPVEL-----VPPESPLAQLFLEREGAS 279
Score = 48.6 bits (117), Expect = 4e-06
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA GH+ +R L+ G + A GH + +++L
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111
Score = 40.9 bits (97), Expect = 0.001
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 10/83 (12%)
Query: 889 IAAQEGHEDCVRLLLHYGA-----DPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSE 943
+ + H L+ G+ D K G G + L A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60
Query: 944 YFVHYYYYYNSAKSGHETVLRLL 966
+H +A GH+ LR L
Sbjct: 61 SPMHE-----AAIHGHQLSLRNL 78
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 273 bits (700), Expect = 2e-84
Identities = 81/330 (24%), Positives = 129/330 (39%), Gaps = 36/330 (10%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
+ D + + W G ++ + G L A + G E
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSG-DTEE---- 55
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
V LL GA +N A+ +G TAL + + D+V ++E A+INQ DN+G L
Sbjct: 56 -----VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
+A C GY + L+ +GA V + EG TPL +A E ++ + + N
Sbjct: 111 HAAASC-----GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV-NRQGV 164
Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
D + L G T L VAAA+G +V+ L+
Sbjct: 165 D-----IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 644 DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDG 703
++ + D GWTPLH AA G EE CR L+E ++ V+ G
Sbjct: 220 QAR------------YDVNIK--DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265
Query: 704 RAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
+ +A +D +L E+ ++ ++K
Sbjct: 266 QTAFDVADEDILGYLEEL-QKKQNLLHSEK 294
Score = 250 bits (642), Expect = 4e-76
Identities = 69/314 (21%), Positives = 112/314 (35%), Gaps = 36/314 (11%)
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
+ +D + + W G ++ + +G L A +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETD---------LEPPVVKRKKTKVKFDDGAVFLAACSS- 50
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
G + V +LE ADIN + DG TAL + D +V L+E GA ++ D E
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQAC-----IDDNVDMVKFLVENGANINQPDNE 105
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
G PL AA G+ D+ E L+ A ++ G TPL A + +
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ--- 162
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ D L + ++ G T LH
Sbjct: 163 ---GVDIEAARKEEERIMLRDARQWLNSGHI--------------NDVRHAKSGGTALHV 205
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA +G+ EV + L++A V+ D DG PL AA G + +E ++ +
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKV 264
Query: 737 GRTALRVNMKNVTK 750
G+TA V +++
Sbjct: 265 GQTAFDVADEDILG 278
Score = 250 bits (641), Expect = 5e-76
Identities = 62/332 (18%), Positives = 120/332 (36%), Gaps = 35/332 (10%)
Query: 371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
+++ D + + G ++ + +G L A G + V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRL 59
Query: 431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL 490
L+ GAD+N +++ G TAL A ++++ VK L+ GA++N D+EG L
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDM---------VKFLVENGANINQPDNEGWIPL 110
Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
A+A G+ DI ++ A + +++G T L ++ + +++ + +
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE-----EEAMEELLQNEVNRQGV- 164
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
+ RD + L + KSG T L AA+ G+ + LL+
Sbjct: 165 -----DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
V+ D +G T L AA G + L++ ++ + G
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL------------CDMEA--VNKVG 265
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
T A + + + +
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 215 bits (551), Expect = 2e-63
Identities = 72/270 (26%), Positives = 113/270 (41%), Gaps = 24/270 (8%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
+ +V C+ + + L A D+ + G TAL+ A VD V+ L+E G
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLL-ERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENG 96
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
ANIN D EGW PL +A+ G+ + + L+ GA V + G T L A E
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE--- 153
Query: 462 VLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
+++ + G + AA E D + + + G
Sbjct: 154 ------LLQNEVNRQGVDIEAARKEEERI-------MLRDARQWLNSGHINDVRHAKSGG 200
Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
TAL V+A + GY +V+ +L++ V+ +D +G TPL AA G + C IL+EN
Sbjct: 201 TALHVAA-----AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Query: 581 ADQDHIDKSGRTPLWAAASMGHASCVALLL 610
D + ++K G+T A L
Sbjct: 256 CDMEAVNKVGQTAFDVADEDILGYLEELQK 285
Score = 78.3 bits (194), Expect = 9e-16
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH A+ +LK L D+ + D G T L+ AAH G +A +IL+E ++
Sbjct: 203 LHVAAAKGYTEVLK-LLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
+ G T A + +L + +
Sbjct: 261 VNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
Score = 46.0 bits (110), Expect = 4e-05
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA +G+ + ++LL+ D D+ G AA G E R+L
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Score = 45.6 bits (109), Expect = 4e-05
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 5/85 (5%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEYFVH 947
AA G+ D L+ GA + G +A + E + + + D E
Sbjct: 112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171
Query: 948 YYYYYNSAKSGHETVLRLLKQYADD 972
+ L + +D
Sbjct: 172 EEERIML----RDARQWLNSGHIND 192
Score = 45.6 bits (109), Expect = 5e-05
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSE 943
AA G E+ R+L+ D + + G+ AF VA + KQ SE
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293
Score = 44.4 bits (106), Expect = 1e-04
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
A G + V LL GAD +++ G A A + + V L++ A+ D+E
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 944 YF--VHYYYYYNSAKSGHETVLRLL 966
+ +H +A G+ + L
Sbjct: 106 GWIPLHA-----AASCGYLDIAEYL 125
Score = 39.8 bits (94), Expect = 0.003
Identities = 12/51 (23%), Positives = 17/51 (33%)
Query: 885 EKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+ D + L + G A VAA G+ VL+LL
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Score = 38.6 bits (91), Expect = 0.006
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ G E + + K G F A SG E VLRLL++ AD
Sbjct: 14 LKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGAD 65
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 273 bits (701), Expect = 1e-83
Identities = 73/375 (19%), Positives = 129/375 (34%), Gaps = 37/375 (9%)
Query: 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
M + + H+ + +LL+ + + G
Sbjct: 21 MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFN 80
Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL 457
+ E L + + G A+ + + + ++ RT L A
Sbjct: 81 HTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSA 138
Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
E + L + K +AAGA VNA D + T L+ + +V+ +++ AD +
Sbjct: 139 EKSEDL-IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK 197
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEK---GAKVDHEDREGMTPLLVAAFEGHRDVCE 574
R+AL +A ++ +L ++ DR GMT L++ A RD
Sbjct: 198 SERSALHQAAAN-----RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252
Query: 575 I---LLENEADQDHI--------DKSGRTPLWAAASMGHASCVALLL-FWGAYVDTIDAE 622
L+E A D+ GRT L AA + + V L+ G+ D D +
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED 312
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
G+T + +AA +G I+VV L+ +G A + D T A H
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQQG------A--------SVEAVDATDHTARQLAQANNH 358
Query: 683 EEVCRALLEAGAKVD 697
+ + +
Sbjct: 359 HNIVDIFDRCRPERE 373
Score = 219 bits (559), Expect = 1e-63
Identities = 60/350 (17%), Positives = 109/350 (31%), Gaps = 69/350 (19%)
Query: 412 WTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
W P + + S + +L A++ G+++
Sbjct: 17 WMPPMENE------------EKNRKNHQSITSSQHSLLEASYDGYIKR------------ 52
Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
N G+ + + + + L A
Sbjct: 53 ------QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA---- 102
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE--------ADQ 583
G + + + + + R T L A + E L+ +E AD
Sbjct: 103 --AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159
Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
+ +D TPL A VA L+ GA + R+ L AAA + ++ +L
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 219
Query: 644 DRGMILGCLAGGRQTGS-LDEQHRDNCGWTPLHYAAIEGHEE---VCRALLEAGAKV--- 696
+ + ++E D G T L A + + L+E GAKV
Sbjct: 220 NST----------KLKGDIEEL--DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267
Query: 697 -----DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
D GR L AAQ + +V+ + + +N +++ DG+T +
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317
Score = 48.0 bits (115), Expect = 8e-06
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-AD 940
+AAQEG + V L+ GA + D A ++A + H ++ + + +
Sbjct: 319 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 44.6 bits (106), Expect = 1e-04
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+A V L+ GADP + R+A AA + ++ +
Sbjct: 172 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218
Score = 42.2 bits (100), Expect = 7e-04
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AAQ + V+ L+ G++ D G+ +AA+ G V+ L
Sbjct: 285 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332
Score = 39.6 bits (93), Expect = 0.004
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 889 IAAQEGHEDCVRLLL---HYGADPKHSDHCGRNAFRVAAKSGH----ETVLRLLKQYAD 940
AA + +L D + D G A + A + + L+++ A
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263
Score = 39.2 bits (92), Expect = 0.006
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 889 IAAQEGHEDCVRLLL--------HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
A + L+ GAD D +A + V L+K A
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190
Query: 940 D 940
D
Sbjct: 191 D 191
Score = 38.8 bits (91), Expect = 0.007
Identities = 3/52 (5%), Positives = 11/52 (21%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
G++ P + A + + ++ +
Sbjct: 67 QGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVN 118
Score = 36.5 bits (85), Expect = 0.042
Identities = 5/46 (10%), Positives = 8/46 (17%), Gaps = 1/46 (2%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
G + + H R A + L
Sbjct: 100 TEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDL 144
Score = 36.1 bits (84), Expect = 0.057
Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 22/77 (28%)
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
W P E K Q + L+ A+ DG+ +
Sbjct: 17 WMPPMENE------------EKNRKNHQSITSSQHSLLEASYDGYI----------KRQR 54
Query: 731 NQKSHDGRTALRVNMKN 747
N+ H N
Sbjct: 55 NELQHYSLYPNPQGYGN 71
Score = 32.6 bits (75), Expect = 0.69
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 889 IAAQEGHEDCV---RLLLHYGADPKHS--------DHCGRNAFRVAAKSGH-ETVLRLLK 936
I A D V +LL+ GA + + GR A AA+ + V L+
Sbjct: 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300
Query: 937 QY-AD 940
+ ++
Sbjct: 301 EKGSN 305
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 267 bits (685), Expect = 2e-82
Identities = 90/333 (27%), Positives = 133/333 (39%), Gaps = 56/333 (16%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQS 433
L A VD VQ LLE GAN+N + E GWTPL +A +V+LLL+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GAD G T AA G +++ +KL L+ GA VN D G TA + +
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKL---------LKLFLSKGADVNECDFYGFTAFMEA 112
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A G + + + A++N + +
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKED----------------------------QERL 144
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASC----VAL 608
+ G T L+ AA +GH +V +ILL+ AD + D GR L A S L
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204
Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN 668
LL GA V+ G+T L +A + ++ +V +LL++ I + D+
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-------------EINDTDS 251
Query: 669 CGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDN 701
G T L A +++ L + GA D D
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 247 bits (632), Expect = 5e-75
Identities = 85/294 (28%), Positives = 129/294 (43%), Gaps = 25/294 (8%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKH-GQTALNVAAHQGFVDAVQILL 398
++ +L K +++L++ L A ++ ++ G T L+ A D V++LL
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLL-EGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
GA+ G TP A+ G ++KL L GADVN D G TA AA G ++
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAAD----------SEGRTALIASAYMGHADIVSS-ILE 507
+K L GA+VN G TAL+ +A GH +++ + E
Sbjct: 120 ---------ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170
Query: 508 YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE 567
AD+N DN GR AL + L + +LL+ GA V+ G TPL++A +
Sbjct: 171 MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 568 GHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
H + + LLE E + + D G+T L A + LL GA D D
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 239 bits (612), Expect = 3e-72
Identities = 79/337 (23%), Positives = 118/337 (35%), Gaps = 88/337 (26%)
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAWGGHLEVTIVLGPLCV 468
E L A +V+ LL+ GA+VN + GG T L A ++
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI--------- 54
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V+LLL GA G T + +A G ++ L AD+N+ D G T
Sbjct: 55 VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT------- 107
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+ AA G + L + A+ + K
Sbjct: 108 -------------------------------AFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
+ + + G T L AA +G+++V+ LLD
Sbjct: 137 TKED-----------------------QERLRKGGATALMDAAEKGHVEVLKILLD---- 169
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH----EEVCRALLEAGAKVDQVDNDGR 704
+ G+ D DN G L +A + E + LL+ GA V+ G+
Sbjct: 170 --------EMGA-DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 705 APLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
PLILA + H LV+ LEQ +N DG+TAL
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Score = 190 bits (485), Expect = 1e-54
Identities = 78/258 (30%), Positives = 107/258 (41%), Gaps = 22/258 (8%)
Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCE 574
+ L + + +V LLE GA V+ ++ E G TPL A D+ E
Sbjct: 2 AVEDNHLLIKAV-----QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 56
Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG 634
+LL + AD K+G TP AA G + L L GA V+ D G T AA G
Sbjct: 57 LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116
Query: 635 NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAG 693
+ + L RG + R+ D++ G T L AA +GH EV + LL E G
Sbjct: 117 KVKALKFLYKRGANVNL----RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 694 AKVDQVDNDGRAPLILAAQDGHYHLVEM---FLEQYEANVNQKSHDGRTAL----RVNMK 746
A V+ DN GR LI A VE L + A+VN + G+T L
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232
Query: 747 NVTKLSFWYLLIQPLLNI 764
+ + LL Q + I
Sbjct: 233 GLVQ----RLLEQEHIEI 246
Score = 150 bits (381), Expect = 1e-40
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 355 NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL-EAGANINHTDCEGWT 413
N+NL + D E + K G TAL AA +G V+ ++ILL E GA++N D G
Sbjct: 130 NVNL-----RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 414 PLRSASWGGHS----AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
L A A+ LLL GADVN G+T L A HL + V
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL---------V 235
Query: 470 KLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
+ LL +N DS+G+TAL+ + + I + + A + D
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 92.5 bits (231), Expect = 1e-20
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 340 DSKNQSVLHKLCAENNINLLKT---FLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQI 396
D+ ++ L ++ + ++ L A D+ + + G+T L +A + + VQ
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQR 237
Query: 397 LLE-AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDM 442
LLE IN TD +G T L A + +LL + GA +C D+
Sbjct: 238 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 51.3 bits (124), Expect = 6e-07
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA G ++L L GAD D G AF AA G L+ L
Sbjct: 78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Score = 50.9 bits (123), Expect = 7e-07
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A Q ED V LLL +GADP G F +AA +G + + L + AD
Sbjct: 45 NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Score = 47.9 bits (115), Expect = 8e-06
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGH-----ETVLRLLKQYAD 940
AA++GH + +++LL GAD D+ GRNA A S LL AD
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211
Score = 47.5 bits (114), Expect = 1e-05
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A ++ H V+ LL + +D G+ A +A + + L K+ A
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 41.7 bits (99), Expect = 7e-04
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 889 IAAQEGHEDCVRLLLHYGAD----------PKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA G ++ L GA+ + G A AA+ GH VL++L
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167
Score = 41.3 bits (98), Expect = 8e-04
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 889 IAAQEGHEDC----VRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A + LLL +GAD G+ +A + H +++ L
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Score = 40.9 bits (97), Expect = 0.001
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGHETVLRLL 935
A Q D V+ LL GA+ + G A + E ++ LL
Sbjct: 11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58
Score = 32.8 bits (76), Expect = 0.43
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD 913
+A + + LL GA D
Sbjct: 259 LAVELKLKKIAELLCKRGASTDCGD 283
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 247 bits (634), Expect = 7e-76
Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 15/246 (6%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
+ ++ ++ ++ L+ AA G VD +L++AGANI+ + TPL A+ H VK
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRT 488
L+++GA V+ D G T L AA GH E VV+ LL+ G VN D G T
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYE---------VVQYLLSNGQMDVNCQDDGGWT 113
Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
+I + H D+V +L +DIN +DN+ L +A G + ILL
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-----GCVDIAEILLAAKC 168
Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
+ + G +PL +AA E D + L ++D +K G TPL A+
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228
Query: 609 LLFWGA 614
+
Sbjct: 229 MSKALQ 234
Score = 233 bits (596), Expect = 2e-70
Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 15/246 (6%)
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
N +PL +A+ GH + +L+Q+GA+++ RT L AA HLE
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA-- 59
Query: 462 VLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGR 520
VK L+ AGA V+ D+EG T L +A GH ++V +L D+N QD+ G
Sbjct: 60 -------VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW 112
Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
T + + + +V +LL KG+ ++ D E L AAF G D+ EILL +
Sbjct: 113 TPMIWATEY-----KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Query: 581 ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVN 640
D ++ G +PL AA CV L L + V + EG T L A+ +
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227
Query: 641 QLLDRG 646
Q+
Sbjct: 228 QMSKAL 233
Score = 226 bits (580), Expect = 3e-68
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 17/245 (6%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+S LH ++++ L A +++ + +T L AA ++AV+ L++
Sbjct: 8 HQNKRSPLHAAAEAGHVDICH-MLVQAGA-NIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA-DVNCSDMGGRTALRAAAWGGHLE 458
AGA ++ D EG T L A+ GH VV+ LL +G DVNC D GG T + A H++
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+ VKLLL+ G+ +N D+E L +A+ G DI +L D++ +
Sbjct: 126 L---------VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G + L ++A + V + L + + V +++EG TPL A+ + +
Sbjct: 177 GDSPLHIAA-----RENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231
Query: 579 NEADQ 583
D
Sbjct: 232 ALQDS 236
Score = 211 bits (540), Expect = 9e-63
Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 21/233 (9%)
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
+ + + R+ L +A G+ + +L++ GA +D + TPL+ AA H
Sbjct: 2 MNFKMEHQNKRSPLHAAA-----EAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH 56
Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY-VDTIDAEGRTVLS 628
+ + L++ A D D G T L AA GH V LL G V+ D G T +
Sbjct: 57 LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
A ++D+V LL +G + D RDN LH+AA G ++
Sbjct: 117 WATEYKHVDLVKLLLSKG------S--------DINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 689 LLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
LL A + V+ G +PL +AA++ Y V +FL + +++V K+ +G T L
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPL 214
Score = 52.4 bits (127), Expect = 1e-07
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
IAA+E DCV L L +D + G + A+ + + L++ K D
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 49.7 bits (120), Expect = 1e-06
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
AA+ GH D +L+ GA+ R AA++ H E V L+K A D+E
Sbjct: 17 AAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE 76
Query: 944 YF--VHYYYYYNSAKSGH-ETVLRLLKQYADDI 973
+H +AK GH E V LL D+
Sbjct: 77 GSTCLHL-----AAKKGHYEVVQYLLSNGQMDV 104
Score = 46.3 bits (111), Expect = 1e-05
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A + H D V+LLL G+D D+ AA SG + LL D
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169
Score = 46.3 bits (111), Expect = 2e-05
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA G D +LL D + G + +AA+ + V+ L + +D
Sbjct: 150 WAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202
Score = 41.6 bits (99), Expect = 6e-04
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGA-DPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA++GH + V+ LL G D D G A + H + V LL + +D
Sbjct: 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 246 bits (632), Expect = 2e-75
Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 17/240 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+D + + A G + + L+EAG ++ D E T L A+ +VK +
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64
Query: 434 GADVNCSDM-GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
GA V+ T L A GHL +V L+ GA + D EG + +
Sbjct: 65 GAIVDQLGGDLNSTPLHWATRQGHLS---------MVVQLMKYGADPSLIDGEGCSCIHL 115
Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK-VVSILLEKGAKVD 551
+A GH IV+ ++ D++ D +G T L +A ++ +LL V+
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-----THSVDPTRLLLTFNVSVN 170
Query: 552 HEDR-EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
D+ T L A G+ V +LLE A+ D + G + L A + + L
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230
Score = 241 bits (618), Expect = 1e-73
Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
++ H D + A+ G + L+++G DV D T L AA ++
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID---- 56
Query: 463 LGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
+VK ++ GA V+ + T L + GH +V +++Y AD + D +G +
Sbjct: 57 -----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 522 ALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR-DVCEILLENE 580
+ ++A G+ +V+ L+ KG VD D+ GMTPL+ AA+ H D +LL
Sbjct: 112 CIHLAAQF-----GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166
Query: 581 ADQDHIDKS-GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
+ DK T L A G+ + ++LLL GA VD + +G + L +A + N+ ++
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI 226
Query: 640 NQLLDRG 646
N L +
Sbjct: 227 NHLQEAR 233
Score = 234 bits (599), Expect = 6e-71
Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 21/258 (8%)
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
H+ D ++ + G + ++E D+ Q D + T L +A+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-----NRI 55
Query: 538 KVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWA 596
+V + KGA VD + TPL A +GH + L++ AD ID G + +
Sbjct: 56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Query: 597 AASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN-IDVVNQLLDRGMILGCLAGG 655
AA GH S VA L+ G VD +D G T L AA + + +D LL
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN------V-- 167
Query: 656 RQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
S++ + + T LH+A + G+ V LLEAGA VD + G + L LA Q +
Sbjct: 168 ----SVNLGDKYH-KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222
Query: 716 YHLVEMFLEQYEANVNQK 733
++ L++
Sbjct: 223 VWMIN-HLQEARQAKGYD 239
Score = 220 bits (564), Expect = 5e-66
Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + + K + L D+ DK T L+ AA +D V+ +
Sbjct: 6 DDYSTWDIVKATQYGIYERCR-ELVEAGY-DVRQPDKENVTLLHWAAINNRIDLVKYYIS 63
Query: 400 AGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
GA ++ + TPL A+ GH ++V L++ GAD + D G + + AA GH
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH-ADIVSSILEYDADINQQDN 517
+V L+A G V+ D G T L+ +AY H D +L ++ +N D
Sbjct: 124 ---------IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174
Query: 518 -DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
TAL + L G V+S+LLE GA VD ++ +G + L +A + + L
Sbjct: 175 YHKNTALHWAVL-----AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Query: 577 LENEADQD 584
E +
Sbjct: 230 QEARQAKG 237
Score = 178 bits (455), Expect = 5e-51
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 17/217 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILL 398
D +N ++LH N I+L+K + S A ++ + T L+ A QG + V L+
Sbjct: 39 DKENVTLLHWAAINNRIDLVK-YYISKGA-IVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96
Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
+ GA+ + D EG + + A+ GH+++V L+ G DV+ D G T L AA+ H
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-- 154
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAAD-SEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
+ +LLL VN D TAL + G+ ++S +LE A+++ Q+
Sbjct: 155 ------SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
G +AL ++ +++ L E +++
Sbjct: 209 KGESALDLAK-----QRKNVWMINHLQEARQAKGYDN 240
Score = 152 bits (388), Expect = 5e-42
Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 52/207 (25%)
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ H D ++ A G + C L+E D DK T L AA V
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC 669
+ GA VD + +
Sbjct: 62 ISKGAIVDQLG----------------------------------------------GDL 75
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
TPLH+A +GH + L++ GA +D +G + + LAAQ GH +V + + +
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQD 134
Query: 730 VNQKSHDGRTAL-----RVNMKNVTKL 751
V+ +G T L R + + T+L
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRL 161
Score = 51.7 bits (125), Expect = 2e-07
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
A Q G + R L+ G D + D AA + + V + + A +
Sbjct: 15 KATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 944 YFV---HYYYYYNSAKSGH-ETVLRLLKQYAD 971
H+ + + GH V++L+K AD
Sbjct: 75 LNSTPLHW-----ATRQGHLSMVVQLMKYGAD 101
Score = 50.9 bits (123), Expect = 5e-07
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A ++GH V L+ YGADP D G + +AA+ GH +++ L
Sbjct: 82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128
Score = 50.5 bits (122), Expect = 6e-07
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH--ETVLRLLKQYAD 940
+AAQ GH V L+ G D D G AA H + LL
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168
Score = 50.1 bits (121), Expect = 1e-06
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEY 944
A G+ + LLL GA+ + G +A +A + + ++ L++ Y
Sbjct: 183 WAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 40.1 bits (95), Expect = 0.002
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 889 IAAQEGHE-DCVRLLLHYGADPKHSDHC-GRNAFRVAAKSGHETVLRLL 935
AA H D RLLL + D A A +G+ TV+ LL
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 246 bits (630), Expect = 9e-75
Identities = 68/334 (20%), Positives = 105/334 (31%), Gaps = 69/334 (20%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD---VNCSDMGGRTALRAAAWGGHLEVT 460
+ +G T L A H + LL A ++ + G+TAL AA G
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST- 60
Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
V+ L AAGA V A+ G TAL + + +L+ + +D
Sbjct: 61 --------VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112
Query: 521 TALS---------VSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
S A + + + +++ E+ +G TPL VA +
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172
Query: 572 VCEILLENEADQDHIDK-SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
+ +L + AD + + GRTPL A AS + LLL GA
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA------------ 220
Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
R G TPL A + + + R L
Sbjct: 221 -----------------------------------RMYGGRTPLGSALLRPNPILARLLR 245
Query: 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
GA + D +P + D + E
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 244 bits (626), Expect = 4e-74
Identities = 63/294 (21%), Positives = 108/294 (36%), Gaps = 32/294 (10%)
Query: 371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGAN---INHTDCEGWTPLRSASWGGHSAVV 427
V + G TAL++A + LL A ++ + G T L A+ G ++ V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 428 KLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGR 487
+ L +GA V ++ GG TAL A +LL S+
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTC---------ACVLLQPRPSHPRDASDTY 112
Query: 488 T--------------ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
A + S + ++ + ++ DG T L V+ +
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH---- 168
Query: 534 DGYAKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
A++V +L + GA ++ + G TPL +A V E+LL+ AD GRT
Sbjct: 169 -KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227
Query: 593 PLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
PL +A + LL GA + + S + + + D ++ +
Sbjct: 228 PLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 189 bits (483), Expect = 3e-54
Identities = 43/254 (16%), Positives = 84/254 (33%), Gaps = 31/254 (12%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ Q+ LH + ++ L + A + + ++ G TAL++A +LL+
Sbjct: 42 NDLGQTALHLAAILGEASTVE-KLYAAGA-GVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 400 AGANINHTDCEGWTP--------------LRSASWGGHSAVVKLLLQSGADVNCSDMGGR 445
+ + + + + + + G
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGHADIVSS 504
T L A E +V+LL AGA +N + GRT L + A ++
Sbjct: 160 TPLHVAVIHKDAE---------MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVA 564
+L+ AD + GRT L + L + +L GA + + ++P +
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLR-----PNPILARLLRAHGAPEPEDGGDKLSPCSSS 265
Query: 565 AFEGHRDVCEILLE 578
+ D + E
Sbjct: 266 GSDSDSDNRDEGDE 279
Score = 105 bits (265), Expect = 3e-25
Identities = 30/168 (17%), Positives = 47/168 (27%), Gaps = 45/168 (26%)
Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
++ + G T L A H + LL + A + +D
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL---------------------- 40
Query: 644 DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDG 703
+++ G T LH AAI G L AGA V + G
Sbjct: 41 ----------------------QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG 78
Query: 704 RAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKL 751
L LA + + L Q + + + D + T
Sbjct: 79 HTALHLACRVRAHTCAC-VLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Score = 52.9 bits (128), Expect = 1e-07
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 16/101 (15%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL------------- 935
+AA G V L GA ++ G A +A + T +L
Sbjct: 51 LAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110
Query: 936 ---KQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
Q D + H +S + + + +
Sbjct: 111 TYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151
Score = 49.9 bits (120), Expect = 2e-06
Identities = 7/50 (14%), Positives = 12/50 (24%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
A + RLL +GA + + +Y
Sbjct: 231 SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280
Score = 48.3 bits (116), Expect = 5e-06
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+A + + LLL GADP + GR A + + RLL
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 46.4 bits (111), Expect = 2e-05
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKH---SDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A HE + LL + A ++ + G+ A +AA G TV +L A
Sbjct: 15 LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Score = 41.0 bits (97), Expect = 0.001
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 13/86 (15%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
+ + + + ++ G VA E V L AD +
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190
Query: 944 YFV---HYYYYYNSAKSGHETVLRLL 966
H + ++ +VL LL
Sbjct: 191 CGRTPLHL-----AVEAQAASVLELL 211
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 231 bits (591), Expect = 4e-69
Identities = 51/323 (15%), Positives = 98/323 (30%), Gaps = 45/323 (13%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
G R + S +K L D +D+ G +A A ++ + V
Sbjct: 1 GMDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRL---------VC 48
Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
LL AGA N + L +A + IV +L D +Q D+ G TAL +
Sbjct: 49 TLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS- 105
Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREG-MTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
G + V + ++K ++ + G T A + L
Sbjct: 106 ----GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAI 160
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRT-VLSVAAAQGNIDVVNQLLDRGMI 648
+ + GH + LLL + +T ++ + +A +I+++ L
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-- 218
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
+ + E+ + ++E + L
Sbjct: 219 ----INIY---------------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTK--DLD 257
Query: 709 LAAQDGHYHLVEMFLEQYEANVN 731
+ + ++ E VN
Sbjct: 258 IVKNNKLDEIISKNKELRLMYVN 280
Score = 228 bits (584), Expect = 3e-68
Identities = 55/299 (18%), Positives = 100/299 (33%), Gaps = 29/299 (9%)
Query: 352 AENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEG 411
LK+FL S D D HG +A A V V LL AGA N +
Sbjct: 8 NTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--N 62
Query: 412 WTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
PL A+ + +VK+LL SG D + D G TAL A G+++ VKL
Sbjct: 63 EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ---------TVKL 113
Query: 472 LLAAGAHVNAADSEG-RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
+ + G +T+ + + IVS L + + ++
Sbjct: 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKN- 171
Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLL-VAAFEGHRDVCEILLENEADQDHIDKS 589
G+ ++ +LL+ + + P + +A ++ + L + + +
Sbjct: 172 ----GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN------- 220
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
+ + A +++ + + I N+ L +
Sbjct: 221 IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279
Score = 227 bits (580), Expect = 1e-67
Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 43/303 (14%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
G + + + + D G + A + +V LL +GA
Sbjct: 1 GMDLSRINTWK---SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N + L AA + +VK+LL +G + D +G TAL + G
Sbjct: 58 NLLE--NEFPLHQAATLEDTK---------IVKILLFSGLDDSQFDDKGNTALYYAVDSG 106
Query: 498 HADIVSSILEYDADINQQDNDG-RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
+ V ++ + + G +T+ + +VS L + +
Sbjct: 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-----MLNDVSIVSYFLSEIP-STFDLAI 160
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP-LWAAASMGHASCVALLLFWGAY 615
++ + + GH D+ +LL+ + + P + A + L +
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
+ + + ++ ++++ ++ + +
Sbjct: 221 IY-------SANLENVLLDDAEIAKMIIEKH--------------VEYKSDSYTKDLDIV 259
Query: 676 YAA 678
Sbjct: 260 KNN 262
Score = 207 bits (530), Expect = 1e-60
Identities = 39/256 (15%), Positives = 88/256 (34%), Gaps = 26/256 (10%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D S + A+NN+ L+ L + A + L+ AA V+ILL
Sbjct: 28 DVHGHSASYYAIADNNVRLVC-TLLNAGA-LKN--LLENEFPLHQAATLEDTKIVKILLF 83
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAWGGHLE 458
+G + + D +G T L A G+ VKL ++ + G +T+ A +
Sbjct: 84 SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS 143
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+V L+ + + + + GH D++ +L+Y N ++
Sbjct: 144 ---------IVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
+ + + +++ L + + + L ++ ++++E
Sbjct: 194 LFIP----DIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIE 242
Query: 579 NEADQDHIDKSGRTPL 594
+ + +
Sbjct: 243 KHVEYKSDSYTKDLDI 258
Score = 196 bits (501), Expect = 1e-56
Identities = 44/254 (17%), Positives = 84/254 (33%), Gaps = 28/254 (11%)
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
G + + + S L D + D G +A + +D ++V LL
Sbjct: 1 GMDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAI-----ADNNVRLVCTLLN 52
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
GA + + PL AA + +ILL + D D G T L+ A G+
Sbjct: 53 AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQT 110
Query: 606 VALLLFWGAYVDTIDAEG-RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
V L + + G +T A ++ +V+ L
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI---------------PST 155
Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI-LAAQDGHYHLVEMFL 723
+ +H GH ++ LL+ + ++ P I LA + +++
Sbjct: 156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF 215
Query: 724 EQYEANVNQKSHDG 737
+ + N+ + +
Sbjct: 216 KY-DINIYSANLEN 228
Score = 115 bits (290), Expect = 2e-28
Identities = 14/144 (9%), Positives = 44/144 (30%), Gaps = 17/144 (11%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTP-LRSASWGGHSAVVKLLLQS 433
+ +++ G VD + +LL+ + N + + P ++ A +++ L +
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
++ +A E+ K+++ + ++ +
Sbjct: 218 DINIY-------SANLENVLLDDAEI---------AKMIIEKHVEYKSDSYTKDLDIVKN 261
Query: 494 AYMGHADIVSSILEYDADINQQDN 517
+ + L + N
Sbjct: 262 NKLDEIISKNKELRLMYVNCVKKN 285
Score = 113 bits (284), Expect = 1e-27
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 25/167 (14%)
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
G + + + + L D G + A A N+ +V LL+ G
Sbjct: 1 GMDL--SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG--- 54
Query: 650 GCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL 709
+ PLH AA ++ + LL +G Q D+ G L
Sbjct: 55 ---------ALKNLLE----NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101
Query: 710 AAQDGHYHLVEMFLEQYEANVNQKSHDG-RTAL----RVNMKNVTKL 751
A G+ V++F+++ + G +T+ +N ++
Sbjct: 102 AVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147
Score = 50.2 bits (121), Expect = 1e-06
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 14/94 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
AA V++LL G D D G A A SG+ +TV +K+
Sbjct: 68 QAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT 127
Query: 944 YFV---HYYYYYNSAKSGH-ETVLRLLKQYADDI 973
+ ++ + V L +
Sbjct: 128 GWKTSFYH-----AVMLNDVSIVSYFLSEIPSTF 156
Score = 46.0 bits (110), Expect = 3e-05
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A + + V LL+ GA + AA + V LL D
Sbjct: 37 YAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLD 87
Score = 45.2 bits (108), Expect = 5e-05
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A V L + + K+GH + ++ LL
Sbjct: 135 HAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186
Score = 45.2 bits (108), Expect = 6e-05
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGR-NAFRVAAKSGH-ETVLRLLKQYAD 940
I + GH D + LLL Y ++ ++A + E + L K +
Sbjct: 167 ITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220
Score = 42.1 bits (100), Expect = 5e-04
Identities = 4/53 (7%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A + ++ L Y + ++ E +++++ +
Sbjct: 201 LAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVE 246
Score = 39.0 bits (92), Expect = 0.004
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSEY 944
++ L D +D G +A A + V LL A ++E+
Sbjct: 6 RINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF 64
Query: 945 FVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
+H +A + V LL D
Sbjct: 65 PLHQ-----AATLEDTKIVKILLFSGLD 87
Score = 35.6 bits (83), Expect = 0.068
Identities = 2/54 (3%), Positives = 11/54 (20%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS 942
+ ++++ + K + K + +
Sbjct: 227 ENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVN 280
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 223 bits (571), Expect = 1e-67
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 11/206 (5%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
L A + +IL + ++ D EG TPL A + K L+ G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRTALIAS 493
AD+N + + A G E ++ +L +N + G ALI +
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTE---------ILAYMLKHATPDLNKHNRYGGNALIPA 113
Query: 494 AYMGHADIVSSILEY-DADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
A GH D V +LE DI+ Q++ G TAL + + Y +V +L+E GA
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLE 578
+D G T + A +G+ ++ +IL +
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 179 bits (457), Expect = 7e-52
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 24/216 (11%)
Query: 515 QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
+ + L + KV IL + +VD D EG TPL +A ++ +
Sbjct: 2 KTYEVGALLEAAN-----QRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAK 56
Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQ 633
L++ AD + + +P A + G +A +L ++ + G L AA +
Sbjct: 57 ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116
Query: 634 GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI-----EGHEEVCRA 688
G+ID V LL+ G D +++ G+T L A + ++++ +
Sbjct: 117 GHIDNVKLLLEDGRE-------------DIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163
Query: 689 LLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
L+E GA DN GR + A Q G+ + ++ +
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 160 bits (407), Expect = 5e-45
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 20/194 (10%)
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
E L A + V EIL + D +D G TPL A L+ G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
A ++ ++ + A AQG +++ +L + D + G
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKH-------------ATPDLNKHNRYGGNA 109
Query: 674 LHYAAIEGHEEVCRALLEAG-AKVDQVDNDGRAPLILAA-----QDGHYHLVEMFLEQYE 727
L AA +GH + + LLE G +D ++ G LI A + +V++ +E
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-G 168
Query: 728 ANVNQKSHDGRTAL 741
A+ + K + GRTA+
Sbjct: 169 ADQSIKDNSGRTAM 182
Score = 135 bits (342), Expect = 3e-36
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGA-NINHTDCEGWTPLRSASWGGHSAVVK 428
D+ L + + A QG + + +L+ ++N + G L A+ GH VK
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123
Query: 429 LLLQSG-ADVNCSDMGGRTALRAAAWG-----GHLEVTIVLGPLCVVKLLLAAGAHVNAA 482
LLL+ G D++ + G TAL A + ++ VKLL+ GA +
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI---------VKLLMENGADQSIK 174
Query: 483 DSEGRTALIASAYMGHADIVSSILEYD 509
D+ GRTA+ + G+ +I + +Y+
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 112 bits (284), Expect = 1e-28
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+S + S A+ +L ++ DL +++G AL AA +G +D V++LLE
Sbjct: 69 NSISDSPYLYAGAQGRTEILA-YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Query: 400 AG-ANINHTDCEGWTPLRSASWG-----GHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
G +I+ + G+T L A + +VKLL+++GAD + D GRTA+ A
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187
Query: 454 GGHLEVTIVLGPLCVVKLLL 473
G+ E + K+L
Sbjct: 188 KGYTE---------ISKILA 198
Score = 93.3 bits (233), Expect = 9e-22
Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
+ L A ++V L + +VD+VD +G PL +A + + + +++
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 726 YEANVNQKSHDGRTAL 741
A++N ++ +
Sbjct: 62 -GADINLQNSISDSPY 76
Score = 49.8 bits (120), Expect = 8e-07
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
IA + + L+ GAD + + + A G +L +
Sbjct: 45 IAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Score = 47.4 bits (114), Expect = 5e-06
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
A Q + +L D G +A + E L+ + AD +S
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71
Query: 944 YFVHYYYYYNSAKSGH-ETVLRLLKQYADDI 973
Y Y + G E + +LK D+
Sbjct: 72 SDSPYLY---AGAQGRTEILAYMLKHATPDL 99
Score = 45.1 bits (108), Expect = 2e-05
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 891 AQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+ ++D V+LL+ GAD D+ GR A A + G+ + ++L QY
Sbjct: 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 42.8 bits (102), Expect = 1e-04
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 889 IAAQEGHEDCVRLLLHYGA-DPKHSDHCGRNAFRVAAKSGHETVLRLL--KQYAD----- 940
A +G + + +L + D + G NA AA+ GH ++LL D
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 941 -DSEYFVHYYYYYNSAKSGHETVLRLL 966
+ ++ +++LL
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLL 164
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 221 bits (567), Expect = 2e-66
Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 23/249 (9%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLE----AGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
D+ G T L++A QG + AV L+ G ++ + TPL A +VV+LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH----VNAADSEG 486
+ +GA D G+TA A ++ LL + A + A + +G
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTC---------LRALLDSAAPGTLDLEARNYDG 116
Query: 487 RTALIASAYMGHADIVSSILEYDADINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLE 545
TAL + + V +LE ADI+ D GR+ L + +V +LL+
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-----NSLSMVQLLLQ 171
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
GA V+ + G + L A+ G + L+ + AD + TPL A S
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 231
Query: 606 VALLLFWGA 614
+ A
Sbjct: 232 LRGKATRPA 240
Score = 211 bits (541), Expect = 7e-63
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 23/252 (9%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLL----QSGADVNCSDMGGRTALRAAAWGGHLEV 459
D +G TPL A G+ V L+ Q G +++ + +T L A V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA----DINQQ 515
V+LL+ AGA A D G+TA + + ++L+ A D+ +
Sbjct: 62 ---------VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112
Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCE 574
+ DG TAL V+ + V +LLE+GA +D D + G +PL+ A + +
Sbjct: 113 NYDGLTALHVAVNT-----ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG 634
+LL++ A+ + SG + L +A+ G V L+ GA + T L VA ++
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227
Query: 635 NIDVVNQLLDRG 646
ID++ R
Sbjct: 228 VIDILRGKATRP 239
Score = 204 bits (523), Expect = 2e-60
Identities = 62/250 (24%), Positives = 101/250 (40%), Gaps = 23/250 (9%)
Query: 340 DSKNQSVLHKLCAENNIN---LLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQI 396
D + LH + N+ L + +L++ + QT L++A V++
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR-ELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 397 LLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA----DVNCSDMGGRTALRAAA 452
L+ AGA+ D G T A ++ LL S A D+ + G TAL A
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGHADIVSSILEYDAD 511
E V+LLL GA ++A D + GR+ LI + +V +L++ A+
Sbjct: 125 NTECQE---------TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
+N Q G +AL ++ G +V L+ GA ++ TPL+VA D
Sbjct: 176 VNAQMYSGSSALHSASGR-----GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230
Query: 572 VCEILLENEA 581
+ A
Sbjct: 231 ILRGKATRPA 240
Score = 203 bits (519), Expect = 9e-60
Identities = 57/260 (21%), Positives = 99/260 (38%), Gaps = 29/260 (11%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEY----DADINQQDNDGRTALSVSALCVPSSD 534
AD +G T L + G+ V ++ +++ +N +T L ++ +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT----- 56
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ----DHIDKSG 590
VV +L+ GA DR G T +A LL++ A + + G
Sbjct: 57 TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116
Query: 591 RTPLWAAASMGHASCVALLLFWGAYVDTIDAE-GRTVLSVAAAQGNIDVVNQLLDRGMIL 649
T L A + V LLL GA +D +D + GR+ L A ++ +V LL G
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG--- 173
Query: 650 GCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL 709
+++ Q G + LH A+ G + R L+ +GA + PL++
Sbjct: 174 ---------ANVNAQ--MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Query: 710 AAQDGHYHLVEMFLEQYEAN 729
A ++ A+
Sbjct: 223 ARSRRVIDILR-GKATRPAS 241
Score = 110 bits (277), Expect = 4e-27
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 17/143 (11%)
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
D +G T L +A QGN+ V++L++ G LD +N TPLH
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--------ELDI--YNNLRQTPLH 51
Query: 676 YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ---YEANVNQ 732
A I V R L+ AGA +D G+ LA + + L+ ++
Sbjct: 52 LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 111
Query: 733 KSHDGRTALRV----NMKNVTKL 751
+++DG TAL V + +L
Sbjct: 112 RNYDGLTALHVAVNTECQETVQL 134
Score = 48.2 bits (116), Expect = 4e-06
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A+ G VR L+ GAD + VA +LR
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235
Score = 46.3 bits (111), Expect = 2e-05
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+A VRLL+ GA P D G+ A +A + T LR L
Sbjct: 52 LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98
Score = 45.1 bits (108), Expect = 4e-05
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
S LH + L++ L A D L + H T L VA + +D ++
Sbjct: 180 MYSGSSALHSASGRGLLPLVR-TLVRSGA-DSSLKNCHNDTPLMVARSRRVIDILRGKAT 237
Query: 400 AGAN 403
A+
Sbjct: 238 RPAS 241
Score = 44.8 bits (107), Expect = 5e-05
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A + V+LLL +GA+ + G +A A+ G V L++ AD
Sbjct: 156 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
Score = 43.2 bits (103), Expect = 2e-04
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKH----SDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A + C+R LL A ++ G A VA + ETV LL++ AD
Sbjct: 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141
Score = 42.4 bits (101), Expect = 4e-04
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A ++ V+LLL GAD D GR+ A ++ V LL+ A+
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Score = 38.6 bits (91), Expect = 0.006
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 889 IAAQEGHEDCVRLLLHY----GADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
IA +G+ V L++ G + ++ + +A + +V+RLL
Sbjct: 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Score = 30.1 bits (69), Expect = 3.3
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 889 IAAQEGHEDCVRLLLHYGA 907
+A D +R A
Sbjct: 222 VARSRRVIDILRGKATRPA 240
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 220 bits (563), Expect = 1e-65
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 29/261 (11%)
Query: 369 LDLELVDKHGQTALNVAAHQGFV-------------DAVQILLEAGANI-NHTDCEGWTP 414
+D+ + G T L +A+ G + + GA++ N TD G T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
L A+ S K LL++ AD N D GRT L AA V ++L+
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV---------FQILIR 111
Query: 475 AGAH-VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
A ++A +G T LI +A + ++ ++ AD+N D+ G++AL +A +
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA-----A 166
Query: 534 DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
+LL+ GA D ++ TPL +AA EG + ++LL++ A++D D R P
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226
Query: 594 LWAAASMGHASCVALLLFWGA 614
A H V LL
Sbjct: 227 RDIAQERMHHDIVRLLDLEHH 247
Score = 206 bits (526), Expect = 1e-60
Identities = 78/333 (23%), Positives = 119/333 (35%), Gaps = 84/333 (25%)
Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
++N +G+TPL AS G G + V
Sbjct: 2 DVNVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAV--- 38
Query: 463 LGPLCVVKLLLAAGAHV-NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
+ + GA + N D G TAL +A +D +LE AD N QDN GRT
Sbjct: 39 ------ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92
Query: 522 ALSVSALCVPSSDGYAKVVSILLEKGAK-VDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
L + V IL+ A +D +G TPL++AA + E L+ +
Sbjct: 93 PLHAAVSA-----DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147
Query: 581 ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVN 640
AD + +D G++ L AA++ + +LL GA N D+
Sbjct: 148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA--------------------NKDM-- 185
Query: 641 QLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD 700
++N TPL AA EG E + LL+ A D D
Sbjct: 186 -------------------------QNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Query: 701 NDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
+ R P +A + H+ +V L+ + +
Sbjct: 221 HMDRLPRDIAQERMHHDIVR-LLDLEHHHHHHH 252
Score = 198 bits (507), Expect = 6e-58
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 29/255 (11%)
Query: 511 DINQQDNDGRTALSVSALC--------VPSSDGYAKVVSILLEKGAKVDHE-DREGMTPL 561
D+N + DG T L +++ + V+S + +GA + ++ DR G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY-VDTID 620
+AA D + LLE AD + D GRTPL AA S +L+ A +D
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
+G T L +AA ++ L++ ++ D+ G + LH+AA
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSH------------ADVNAV--DDLGKSALHWAAAV 167
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA 740
+ + LL+ GA D +N PL LAA++G Y ++ L+ + AN + H R
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLP 226
Query: 741 LRV----NMKNVTKL 751
+ ++ +L
Sbjct: 227 RDIAQERMHHDIVRL 241
Score = 153 bits (389), Expect = 5e-42
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 10/176 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D+ ++ LH + + + + L A DL+ G T L +AA ++ L+
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
+ A++N D G + L A+ + +LL++GA+ + + T L AA G E
Sbjct: 146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE- 204
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
K+LL A+ + D R + H DIV + +
Sbjct: 205 --------TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 51.3 bits (124), Expect = 5e-07
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSE 943
+AA+EG + ++LL + A+ +DH R +A + H + V L ++
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251
Score = 47.5 bits (114), Expect = 8e-06
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA+ D + LL AD D+ GR A + + V ++L
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109
Score = 46.7 bits (112), Expect = 1e-05
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA + D +LL GA+ ++ +AA+ G ET LL +A+
Sbjct: 163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Score = 45.2 bits (108), Expect = 5e-05
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA+ E + L++ AD D G++A AA + + + LLK A+
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Score = 38.6 bits (91), Expect = 0.006
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 890 AAQEGHEDCVRLLLHYGADPK-HSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+E + ++ GA +D G A +AA+ + RLL+ AD
Sbjct: 30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82
Score = 37.4 bits (88), Expect = 0.015
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHS-DHCGRNAFRVAAKSGHETVLRLL 935
A + ++L+ A + H G +AA+ E +L L
Sbjct: 96 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 214 bits (547), Expect = 7e-64
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 16/232 (6%)
Query: 389 GFVDAVQILLEAGANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA 447
+ + GA++ N TD G T L A+ S K LL++ AD N D GRT
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRTALIASAYMGHADIVSSIL 506
L AA V ++L+ A ++A +G T LI +A + ++ ++
Sbjct: 62 LHAAVSADAQGV---------FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112
Query: 507 EYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAF 566
AD+N D+ G++AL +A +LL+ GA D ++ TPL +AA
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAV-----NNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Query: 567 EGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
EG + ++LL++ A++D D R P A H V LL +
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219
Score = 201 bits (514), Expect = 3e-59
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 15/209 (7%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
D+ G+TAL++AA DA + LLEA A+ N D G TPL +A V ++L+++
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 435 A-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
A D++ G T L AA +++ L+ + A VNA D G++AL +
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEG---------MLEDLINSHADVNAVDDLGKSALHWA 132
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A + + D +L+ A+ + Q+N T L ++A +G + +LL+ A D
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA-----REGSYETAKVLLDHFANRDIT 187
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEAD 582
D P +A H D+ +L E
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLV 216
Score = 194 bits (495), Expect = 1e-56
Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 16/228 (7%)
Query: 421 GGHSAVVKLLLQSGADV-NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHV 479
G AV+ + GA + N +D G TAL AA + K LL A A
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA---------AKRLLEASADA 51
Query: 480 NAADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAK 538
N D+ GRT L A+ + ++ A D++ + +DG T L ++A
Sbjct: 52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-----AVEG 106
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
++ L+ A V+ D G + L AA + D +LL+N A++D + TPL+ AA
Sbjct: 107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 166
Query: 599 SMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
G +LL A D D R +A + + D+V L +
Sbjct: 167 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
Score = 189 bits (483), Expect = 4e-55
Identities = 72/241 (29%), Positives = 105/241 (43%), Gaps = 22/241 (9%)
Query: 497 GHADIVSSILEYDADI-NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR 555
++S + A + NQ D G TAL ++A + LLE A + +D
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARY-----SRSDAAKRLLEASADANIQDN 56
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEA-DQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
G TPL A + V +IL+ N A D D G TPL AA + + L+ A
Sbjct: 57 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
V+ +D G++ L AAA N+D LL G A + D Q +N TPL
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG------A------NKDMQ--NNREETPL 162
Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734
AA EG E + LL+ A D D+ R P +A + H+ +V L++Y + +
Sbjct: 163 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR-LLDEYNLVRSPQL 221
Query: 735 H 735
H
Sbjct: 222 H 222
Score = 179 bits (457), Expect = 1e-51
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Query: 535 GYAKVVSILLEKGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
V+S + +GA + ++ DR G T L +AA D + LLE AD + D GRTP
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 594 LWAAASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCL 652
L AA S +L+ A +D +G T L +AA ++ L++
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH------ 115
Query: 653 AGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQ 712
A D D+ G + LH+AA + + LL+ GA D +N PL LAA+
Sbjct: 116 A--------DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Query: 713 DGHYHLVEMFLEQYEANVNQKSHDGRTALRV----NMKNVTKL 751
+G Y ++ L+ + AN + H R + ++ +L
Sbjct: 168 EGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRL 209
Score = 154 bits (393), Expect = 6e-43
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 10/178 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D+ ++ LH + + + + L A DL+ G T L +AA ++ L+
Sbjct: 55 DNMGRTPLHAAVSADAQGVFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
+ A++N D G + L A+ + +LL++GA+ + + T L AA G E
Sbjct: 114 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE- 172
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
K+LL A+ + D R + H DIV + EY+ + Q +
Sbjct: 173 --------TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222
Score = 46.6 bits (112), Expect = 1e-05
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA+EG + ++LL + A+ +DH R +A + H ++RLL
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 45.9 bits (110), Expect = 2e-05
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA+ E + L++ AD D G++A AA + + + LLK A+
Sbjct: 98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Score = 45.5 bits (109), Expect = 2e-05
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA + D +LL GA+ ++ +AA+ G ET LL +A+
Sbjct: 131 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Score = 45.5 bits (109), Expect = 3e-05
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADD 941
+AA+ D + LL AD D+ GR A + L++ A D
Sbjct: 31 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Score = 38.5 bits (91), Expect = 0.005
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHS-DHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A + ++L+ A + H G +AA+ + L+ +AD
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
Score = 34.3 bits (80), Expect = 0.12
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 894 GHEDCVRLLLHYGADPKHS-DHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ ++ GA + D G A +AA+ + RLL+ AD
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 50
Score = 33.5 bits (78), Expect = 0.23
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDH 914
IA + H D VRLL Y H
Sbjct: 197 IAQERMHHDIVRLLDEYNLVRSPQLH 222
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 208 bits (531), Expect = 2e-62
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
+++ A QG +D ++ L G N +N D G+TPL AS G V+ LL+ GAD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
+ +AL A+ GG+ + +V LLL +N D G T L+ +
Sbjct: 62 PHILAKERESALSLASTGGYTD---------IVGLLLERDVDINIYDWNGGTPLLYAVRG 112
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
H V ++L AD+ + + G T + ++ + GY KV ++ K+ +
Sbjct: 113 NHVKCVEALLARGADLTTEADSGYTPMDLAV-----ALGYRKVQQVIENHILKLFQSNLV 167
Query: 557 GMTP 560
P
Sbjct: 168 PADP 171
Score = 204 bits (523), Expect = 2e-61
Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGAD-VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
+ + G +K L+ G + VN D G T L A+ G +E V
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET---------V 52
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
+ LL GA + E +AL ++ G+ DIV +LE D DIN D +G T L +
Sbjct: 53 RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG 112
Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
+ K V LL +GA + E G TP+ +A G+R V +++ + +
Sbjct: 113 -----NHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167
Query: 590 GRTP 593
P
Sbjct: 168 PADP 171
Score = 190 bits (486), Expect = 3e-56
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 443 GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADI 501
G ++ A G L+ +K L G VN D G T LI ++ G +
Sbjct: 1 GDSLSIHQLAAQGELD---------QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET 51
Query: 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPL 561
V +LE+ AD + + +ALS+++ + GY +V +LLE+ ++ D G TPL
Sbjct: 52 VRFLLEWGADPHILAKERESALSLAS-----TGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
L A H E LL AD SG TP+ A ++G+ ++ + +
Sbjct: 107 LYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166
Query: 622 EGRT 625
Sbjct: 167 VPAD 170
Score = 188 bits (479), Expect = 3e-55
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
+H+L A+ ++ LK + D+ G T L A+ G ++ V+ LLE GA+ +
Sbjct: 6 IHQLAAQGELDQLK-EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
E + L AS GG++ +V LLL+ D+N D G T L A G H++
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK-------- 116
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
V+ LLA GA + G T + + +G+ + I + + Q +
Sbjct: 117 -CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 185 bits (473), Expect = 2e-54
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 16/184 (8%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQ-DHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
+ A +G D + L + + D+ G TPL A++ G V LL WGA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
+ E + LS+A+ G D+V LL+R + D D G TPL
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDV--------------DINIYDWNGGTPLL 107
Query: 676 YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
YA H + ALL GA + + G P+ LA G+ + + +E + + Q +
Sbjct: 108 YAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ-VIENHILKLFQSNL 166
Query: 736 DGRT 739
Sbjct: 167 VPAD 170
Score = 175 bits (447), Expect = 8e-51
Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 53/222 (23%)
Query: 486 GRTALIASAYMGHADIVSSILEYDAD-INQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
++ A G D + L + +N+ D G T L ++ + G + V LL
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS-----AFGEIETVRFLL 56
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
E GA +E + L +A+ G+ D+ +LLE + D + D +G TPL A H
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116
Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
CV LL GA + T
Sbjct: 117 CVEALLARGADLTT---------------------------------------------- 130
Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
+ G+TP+ A G+ +V + + K+ Q + P
Sbjct: 131 -EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 121 bits (306), Expect = 6e-32
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
+ AAQG +D + + L +G D G+TPL +A+ G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKG-------------DNLVNKPDERGFTPLIWASAFGE 48
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
E R LLE GA + + + L LA+ G+ +V + LE+ + ++N +G T L
Sbjct: 49 IETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106
Score = 63.2 bits (155), Expect = 1e-11
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
L N++ ++ L + A DL G T +++A G+ Q++ +
Sbjct: 106 LLYAVRGNHVKCVE-ALLARGA-DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163
Query: 407 TDCEGWTP 414
++ P
Sbjct: 164 SNLVPADP 171
Score = 55.5 bits (135), Expect = 5e-09
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A + H CV LL GAD G +A G+ V +++
Sbjct: 108 YAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 51.6 bits (125), Expect = 1e-07
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
A+ G + VR LL +GADP +A +A+ G+ + V LL++ D D
Sbjct: 42 WASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN 101
Query: 944 YF--VHYYYYYNSAKSGH-ETVLRLLKQYAD 971
+ Y + + H + V LL + AD
Sbjct: 102 GGTPLLY-----AVRGNHVKCVEALLARGAD 127
Score = 46.6 bits (112), Expect = 6e-06
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGAD-PKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A +G D ++ L G + D G A+ G ETV LL+ AD
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Score = 39.3 bits (93), Expect = 0.002
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGR 917
+A G+ +++ ++ S+
Sbjct: 141 LAVALGYRKVQQVIENHILKLFQSNLVPA 169
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 205 bits (525), Expect = 1e-61
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
+++ A QG + + +E INHTD EG+TPL A+ G AVV+ LLQ+GAD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
G +AL A G+ + +VK+LL G VN D G T L+ + +
Sbjct: 62 PQLLGKGRESALSLACSKGYTD---------IVKMLLDCGVDVNEYDWNGGTPLLYAVHG 112
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
H V +LE AD + + G ++ ++ + GY V ++ K+ +E
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDLAV-----ALGYRSVQQVIESHLLKLLQNIKE 167
Score = 197 bits (503), Expect = 1e-58
Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 14/178 (7%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
+ + G + ++ +N +D G T L AA G + V V+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAV---------VE 53
Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
LL GA +AL + G+ DIV +L+ D+N+ D +G T L +
Sbjct: 54 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV--- 110
Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
+ K V +LLE GA E G + +A G+R V +++ + K
Sbjct: 111 --HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 182 bits (466), Expect = 2e-53
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
+H+L A+ + L E + D+ G T L AA G + V+ LL+ GA+
Sbjct: 7 VHQLAAQGEMLYLA-TRIEQEN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
+ L A G++ +VK+LL G DVN D G T L A G H++
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK-------- 116
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
VK+LL +GA G ++ + +G+ + I + + Q +
Sbjct: 117 -CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 182 bits (465), Expect = 2e-53
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 15/180 (8%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
+ A +G +E E +H D+ G TPL AA+ G + V LL GA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ + LS+A ++G D+V LLD G+ D D G TPL Y
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGV--------------DVNEYDWNGGTPLLY 108
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
A H + + LLE+GA + G + LA G+ + + +E + + Q +
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ-VIESHLLKLLQNIKE 167
Score = 175 bits (446), Expect = 9e-51
Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 52/217 (23%)
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
++ A G +++ +E + IN D +G T L +A + G VV LL+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA-----AHGQIAVVEFLLQ 57
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
GA + + L +A +G+ D+ ++LL+ D + D +G TPL A H C
Sbjct: 58 NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
V +LL GA
Sbjct: 118 VKMLLESGADPT-----------------------------------------------I 130
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
+ G+ + A G+ V + + K+ Q +
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 147 bits (375), Expect = 4e-41
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
+ + A+ G +A + ++ D EG T L AAA G I VV LL G
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-- 59
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
A D Q + L A +G+ ++ + LL+ G V++ D +G PL+
Sbjct: 60 ----A--------DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
A H V+M LE A+ ++ G ++
Sbjct: 108 YAVHGNHVKCVKMLLES-GADPTIETDSGYNSM 139
Score = 55.5 bits (135), Expect = 5e-09
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A H CV++LL GADP G N+ +A G+ +
Sbjct: 108 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160
Score = 51.6 bits (125), Expect = 1e-07
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A +G + + H+D G AA G V LL+ AD
Sbjct: 9 QLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Score = 50.1 bits (121), Expect = 3e-07
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA G V LL GADP+ +A +A G+ + V LL D
Sbjct: 42 WAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Score = 37.0 bits (87), Expect = 0.011
Identities = 2/25 (8%), Positives = 9/25 (36%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD 913
+A G+ +++ + +
Sbjct: 141 LAVALGYRSVQQVIESHLLKLLQNI 165
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 206 bits (528), Expect = 3e-61
Identities = 57/241 (23%), Positives = 92/241 (38%), Gaps = 25/241 (10%)
Query: 378 GQTALNVAAHQGFVDAVQ-ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
L+ A + VQ +L + + D +G PL + + LL +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 437 VNCSDMG---GRTALRAAAWGGHLEVTIVLGPLCVVKLLL--AAGAHVNAADSEGRTALI 491
VN D G T A G+LE VVK L +N ++G T L
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLE---------VVKSLYDRPLKPDLNKITNQGVTCLH 112
Query: 492 ASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG-AKV 550
+ ++ ++E A + +D + L +A S G K++ +L G + V
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-----SVGSLKLIELLCGLGKSAV 167
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ +D++G TPL A EGH D +L+E A+ D +D G A +
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 224
Query: 610 L 610
L
Sbjct: 225 L 225
Score = 190 bits (486), Expect = 2e-55
Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 25/240 (10%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANIN- 405
LH+ C EN ++ L S + L D+ G+ L+ + + LL N+N
Sbjct: 6 LHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 406 --HTDCEGWTPLRSASWGGHSAVVKLLLQ--SGADVNCSDMGGRTALRAAAWGGHLEVTI 461
+ D GWTP A G+ VVK L D+N G T L A E
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE--- 121
Query: 462 VLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY-DADINQQDNDGR 520
V + L+ GA V D + L +A +G ++ + + +N QD G
Sbjct: 122 ------VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 521 TALSVSALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
T L + ++G+ +L+EK GA+ D D +G VA + V + L N
Sbjct: 176 TPLFHAL-----AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227
Score = 190 bits (485), Expect = 3e-55
Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 25/240 (10%)
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
L + + + + KV +L K + + +D++G PL + ++ LL
Sbjct: 2 SNYPLHQACME----NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Query: 579 NEAD---QDHIDKSGRTPLWAAASMGHASCVALLL--FWGAYVDTIDAEGRTVLSVAAAQ 633
+ D+ D SG TP A S+G+ V L ++ I +G T L +A +
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117
Query: 634 GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG 693
+V L++ G S+ +D PLH AA G ++ L G
Sbjct: 118 KWFEVSQFLIENG------------ASVRI--KDKFNQIPLHRAASVGSLKLIELLCGLG 163
Query: 694 -AKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV-NMKNVTKL 751
+ V+ D G PL A +GH + +E+Y A + + G A V + V K
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223
Score = 188 bits (481), Expect = 9e-55
Identities = 64/287 (22%), Positives = 102/287 (35%), Gaps = 68/287 (23%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
L A V +LL + + + D +GR L S +I S
Sbjct: 2 SNYPLHQACMENEFFK--------VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS 53
Query: 504 SILEYDADINQQ---DNDGRTALSVSALCVPSSDGYAKVVSILLEK--GAKVDHEDREGM 558
+L ++N D+ G T ++ S G +VV L ++ ++ +G+
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIAC-----SVGNLEVVKSLYDRPLKPDLNKITNQGV 108
Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
T L +A + +V + L+EN A DK + PL AAS+G + LL
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL--------- 159
Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+ + N +D GWTPL +A
Sbjct: 160 --------CGLGKSAVNW-----------------------------QDKQGWTPLFHAL 182
Query: 679 IEGHEEVCRALLEA-GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
EGH + L+E GA+ D VDN G +A + + + FL
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
Score = 45.1 bits (108), Expect = 4e-05
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+A + + + L+ GA + D + AA G ++ LL
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 42.0 bits (100), Expect = 4e-04
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHC---GRNAFRVAAKSGHETVLRLL 935
+ + LL + D+ G F +A G+ V++ L
Sbjct: 42 WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Score = 41.7 bits (99), Expect = 5e-04
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 889 IAAQEGHEDCVRLLL--HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
IA G+ + V+ L D + G +A E L++ A
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Score = 40.5 bits (96), Expect = 0.001
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 889 IAAQEGHEDCVRLLLHYG-ADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA G + LL G + D G A GH LL
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Score = 39.4 bits (93), Expect = 0.003
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVR-LLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A E V+ LL + D GR + E LL + +
Sbjct: 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Score = 37.0 bits (87), Expect = 0.015
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A EGH D LL+ YGA+ D+ G A VA +E V +
Sbjct: 180 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 224
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 204 bits (521), Expect = 2e-60
Identities = 49/229 (21%), Positives = 79/229 (34%), Gaps = 20/229 (8%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
K GQ + A + L +I + T + G + ++
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----S 63
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
V L AA G+L ++ L VN D G TAL +
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSW---------LRECLDNRVGVNGLDKAGSTALYWAC 114
Query: 495 YMGHADIVSS-ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
+ GH DIV + + ++NQQ+ G TAL +A GYA +V +LL KGA+ D
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA-----WKGYADIVQLLLAKGARTDLR 169
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
+ E +A + + +A + + + H
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 191 bits (488), Expect = 9e-56
Identities = 42/239 (17%), Positives = 72/239 (30%), Gaps = 25/239 (10%)
Query: 480 NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKV 539
G+ + + Y + + DI + T S G +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT-----SKGRTGL 60
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
+ V + PL AA G+ L+N + +DK+G T L+ A
Sbjct: 61 I-----PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Query: 600 MGHASCVALLLF-WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQT 658
GH V +L ++ + G T L AA +G D+V LL +G A
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG------A----- 164
Query: 659 GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
R+ A + + A + + + + H+H
Sbjct: 165 ---RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 189 bits (483), Expect = 4e-55
Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 22/224 (9%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
+ + E D+ + T +G + +
Sbjct: 16 VFRALYTFEPRTPDELYIE-EG-DIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAE 68
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
PL A+ G+ + ++ L + VN D G TAL A GGH +
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD-------- 120
Query: 467 CVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
+V++L +N + G TAL A+A+ G+ADIV +L A + ++ + + A +
Sbjct: 121 -IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
+ + A ++ A + E + E H
Sbjct: 180 AT-----NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 141 bits (357), Expect = 3e-38
Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 19/155 (12%)
Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
K G+ ++ A L + I T ++G ++
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP------ 62
Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
S + PLH AA G+ R L+ V+ +D G
Sbjct: 63 -------------SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTA 109
Query: 707 LILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
L A GH +VEM Q +NQ++ G TAL
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144
Score = 136 bits (346), Expect = 1e-36
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 12/162 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL- 398
+ LH+ N++ L+ + +DK G TAL A H G D V++L
Sbjct: 70 AESIDNPLHEAAKRGNLSWLR-ECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEMLFT 127
Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
+ +N + G T L +A+W G++ +V+LLL GA + ++ + A A
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS 187
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
++K A +++E S H
Sbjct: 188 ---------LLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 52.2 bits (126), Expect = 2e-07
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA +G+ D V+LLL GA + + AF +A + ++L+
Sbjct: 146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKK 192
Score = 48.4 bits (116), Expect = 3e-06
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA+ G+ +R L D G A A GH+ ++ +L
Sbjct: 79 EAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125
Score = 46.5 bits (111), Expect = 1e-05
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DS 942
A GH+D V +L + + G A AA G+ + V LL + A +
Sbjct: 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
Query: 943 EYF--VHYYYYYNSAKSGHETVLRLL 966
E + + ++L+
Sbjct: 172 EKKLAFDM-----ATNAACASLLKKK 192
Score = 41.8 bits (99), Expect = 4e-04
Identities = 9/86 (10%), Positives = 17/86 (19%), Gaps = 8/86 (9%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYF--V 946
A L D + + G ++ +
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPL 77
Query: 947 HYYYYYNSAKSGH-ETVLRLLKQYAD 971
H +AK G+ + L
Sbjct: 78 HE-----AAKRGNLSWLRECLDNRVG 98
Score = 39.5 bits (93), Expect = 0.003
Identities = 4/40 (10%), Positives = 9/40 (22%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH 928
+A ++ A S+ + H
Sbjct: 179 MATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 201 bits (514), Expect = 5e-59
Identities = 55/261 (21%), Positives = 91/261 (34%), Gaps = 32/261 (12%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
G + G + A++ E TP +A+ + LL+
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLE-D 67
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIAS 493
DV+ D GRTAL A G + V+LL AGA ++ D G TAL +
Sbjct: 68 RDVDAVDENGRTALLFVAGLGSDK---------CVRLLAEAGADLDHRDMRGGLTALHMA 118
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A ++V +++E ADI +D G TAL ++ ++ G ++ E
Sbjct: 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAR-----EILKTTPKGNPMQFGRRIGLE 173
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
+ +L + +V EI+ + G+ + C +
Sbjct: 174 K---VINVLEGQVFEYAEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHV 222
Query: 614 AYVDTIDAEGRTVLSVAAAQG 634
A D E L A A+
Sbjct: 223 AEDVAKDYE--DGLEYAVAES 241
Score = 196 bits (501), Expect = 2e-57
Identities = 55/284 (19%), Positives = 86/284 (30%), Gaps = 46/284 (16%)
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
+ T EG GHS ADV T AA +
Sbjct: 4 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQ- 59
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-ND 518
+ LL V+A D GRTAL+ A +G V + E AD++ +D
Sbjct: 60 --------ALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G TAL ++A +VV L+E GA ++ ED G+T L +A ++
Sbjct: 111 GLTALHMAA-----GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 165
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
+ +A ++ +G+ V + + D
Sbjct: 166 FGRRIGLEKV---INVLEGQVFEYAEVDEIVE--------KRGKGKDVEYLVRWKDGGDC 214
Query: 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
++ +D L YA E
Sbjct: 215 EWVKGVHV--------------AEDVAKDYE--DGLEYAVAESV 242
Score = 177 bits (452), Expect = 1e-50
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 29/230 (12%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
V +T AA + A+ LLE +++ D G T L + G V+LL ++
Sbjct: 41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99
Query: 434 GADVNCSDM-GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
GAD++ DM GG TAL AA E VV+ L+ GA + D G TAL
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPE---------VVEALVELGADIEVEDERGLTALEL 150
Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
+ + + +++ I + V + YA+V I+ ++G
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEK--------VINVLEGQVFEYAEVDEIVEKRGK---- 198
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
G + ++ D + + A + + K L A +
Sbjct: 199 ----GKDVEYLVRWKDGGDCEWVKGVHVA--EDVAKDYEDGLEYAVAESV 242
Score = 167 bits (425), Expect = 6e-47
Identities = 49/180 (27%), Positives = 64/180 (35%), Gaps = 20/180 (11%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
EG L+ +GH AD + TP W AA ++ LL
Sbjct: 14 EGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLL-EDRD 69
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRD-NCGWTPL 674
VD +D GRT L A G+ V L + G D HRD G T L
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAG--------------ADLDHRDMRGGLTAL 115
Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734
H AA EV AL+E GA ++ D G L LA + Q+ + +
Sbjct: 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG-NPMQFGRRIGLEK 174
Score = 160 bits (408), Expect = 9e-45
Identities = 53/253 (20%), Positives = 77/253 (30%), Gaps = 49/253 (19%)
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
++ +G + DG++ A V E TP AA +
Sbjct: 8 GSRTAGEGAMEYLIEW-----KDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQ 59
Query: 572 VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAE-GRTVLSVA 630
LLE+ D D +D++GRT L A +G CV LL GA +D D G T L +A
Sbjct: 60 ALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118
Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
A +VV L++ G A D + D G T L A +
Sbjct: 119 AGYVRPEVVEALVELG------A--------DIEVEDERGLTALELAREILKTTPKGNPM 164
Query: 691 EAGAKVDQV----------------------DNDGRAPLILAAQDGHYHLVEMFLEQYEA 728
+ G ++ G+ L + A
Sbjct: 165 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEW-VKGVHVA 223
Query: 729 NVNQKSHDGRTAL 741
K D L
Sbjct: 224 EDVAK--DYEDGL 234
Score = 154 bits (392), Expect = 2e-42
Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 31/231 (13%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
S+ ++ + + L L+ D++ VD++G+TAL A G V++L E
Sbjct: 42 VSEYETPWWTAARKADEQALSQLLEDR---DVDAVDENGRTALLFVAGLGSDKCVRLLAE 98
Query: 400 AGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
AGA+++H D G T L A+ VV+ L++ GAD+ D G TAL A
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
+ G + ++ +A++ +I ++
Sbjct: 159 ---------PKGNPMQFGRRIGLEKV---INVLEGQVFEYAEV--------DEIVEKRGK 198
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
G+ + + A+ +D E L A E
Sbjct: 199 GKDVEYLVRW-----KDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESV 242
Score = 78.0 bits (193), Expect = 5e-16
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716
+ + G +GH A V ++ P AA+
Sbjct: 2 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 58
Query: 717 HLVEMFLEQYEANVNQKSHDGRTAL 741
+ LE +V+ +GRTAL
Sbjct: 59 QALSQLLED--RDVDAVDENGRTAL 81
Score = 53.0 bits (128), Expect = 1e-07
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSEYFVH 947
+AA + V L+ GAD + D G A +A + T Q+ V
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 176
Query: 948 YYYYYNSAKSGHETVLRLLKQYADD 972
+ V ++++
Sbjct: 177 NVLEGQVF--EYAEVDEIVEKRGKG 199
Score = 48.0 bits (115), Expect = 5e-06
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGHETVLRLL 935
A G + CVRLL GAD H D G A +AA V+ L
Sbjct: 83 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Score = 43.4 bits (103), Expect = 2e-04
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
I ++GH + AD + AA+ E L L + D
Sbjct: 21 IEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLEDRD 69
Score = 28.3 bits (64), Expect = 9.5
Identities = 5/40 (12%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH 928
+ + DC + + A+ D + A
Sbjct: 205 LVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESV 242
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 200 bits (511), Expect = 6e-59
Identities = 50/222 (22%), Positives = 79/222 (35%), Gaps = 17/222 (7%)
Query: 394 VQILLEAGANINHTD---CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA 450
++ +L + L A+ G VV+ ++ D + + G TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA 510
A G + +V L+ AGA+VN+ DS G T L +A I +++++ A
Sbjct: 61 AICGANYS---------IVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Query: 511 DINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
I +DG TA C P +GYA + L + + + + L + E
Sbjct: 112 AIFATTLSDGATAFE---KCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG 168
Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
D D T W AA G V F
Sbjct: 169 -DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209
Score = 180 bits (459), Expect = 9e-52
Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 18/198 (9%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
L AA G ++ VQ ++ + + + EG T L +A G + ++V L+ +GA+V
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD-SEGRTAL-IASAY 495
N D G T L AA + L+ GA + A S+G TA Y
Sbjct: 81 NSPDSHGWTPLHCAASCNDTV---------ICMALVQHGAAIFATTLSDGATAFEKCDPY 131
Query: 496 M-GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
G+AD + + + + + ++ AL S + +S + V D
Sbjct: 132 REGYADCATYLADVEQSMGLMNSGAVYAL------WDYSAEFGDELSFREGESVTVLRRD 185
Query: 555 REGMTPLLVAAFEGHRDV 572
T AA G
Sbjct: 186 GPEETDWWWAALHGQEGY 203
Score = 157 bits (399), Expect = 1e-43
Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 20/207 (9%)
Query: 540 VSILLEKGAKVDHEDRE---GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWA 596
+ +L K R + LL AA G +V + ++ D ++ G T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 597 AASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR 656
A + S V L+ GA V++ D+ G T L AA+ + + L+ G
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG---------- 110
Query: 657 QTGSLDEQHRDNCGWTPLHYAAI--EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG 714
++ + G T EG+ + L + + +++ L + +
Sbjct: 111 --AAIFATT-LSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167
Query: 715 HYHLVEMFLEQYEANVNQKSHDGRTAL 741
L F E V ++ T
Sbjct: 168 GDEL--SFREGESVTVLRRDGPEETDW 192
Score = 155 bits (394), Expect = 5e-43
Identities = 41/241 (17%), Positives = 69/241 (28%), Gaps = 20/241 (8%)
Query: 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPL 561
+ S+L + L L + G +VV +++ + EG+T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLV--LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
A + + + L+ A+ + D G TPL AAS L+ GA +
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 622 -EGRTVLSVAAA--QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+G T +G D L D ++ L +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQ--------------SMGLMNSGAVYALWDYS 164
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGR 738
E +E+ V + D AA G V V + +
Sbjct: 165 AEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVK 223
Query: 739 T 739
Sbjct: 224 H 224
Score = 121 bits (307), Expect = 2e-31
Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 16/179 (8%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH N +++ FL + A ++ D HG T L+ AA L++ GA I
Sbjct: 58 LHNAICGANYSIVD-FLITAGA-NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Query: 407 TD-CEGWTPLRSASWG--GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
T +G T G++ L + + G AL + E+
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL---- 171
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV-SSILEYDADINQQDNDGRT 521
V D T +A G V + + Q + +
Sbjct: 172 ------SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKH 224
Score = 47.3 bits (113), Expect = 7e-06
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
A + V L+ GA+ D G AA + L++ A
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119
Query: 944 YFVHYYYYYNSAKSGHETVLRLL 966
+ + + G+ L
Sbjct: 120 DGATAFEKCDPYREGYADCATYL 142
Score = 46.9 bits (112), Expect = 1e-05
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA G + V+ + DP + G A A + V L+ A+
Sbjct: 27 DAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN 79
Score = 41.1 bits (97), Expect = 7e-04
Identities = 6/51 (11%), Positives = 13/51 (25%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
+EG+ DC L + A + + + +
Sbjct: 130 PYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVT 180
Score = 35.7 bits (83), Expect = 0.045
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 899 VRLLLHYGADPKHSDHCGRN---AFRVAAKSGH-ETVLRLLKQYAD 940
+R +L P+ + N AA +G E V + +K+ D
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND 46
Score = 29.5 bits (67), Expect = 4.9
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLL 935
+ E ++ + D + AA G V R
Sbjct: 163 YSAEFGDE-LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 192 bits (490), Expect = 7e-56
Identities = 49/238 (20%), Positives = 91/238 (38%), Gaps = 26/238 (10%)
Query: 374 VDKHGQTALNVAAHQG----FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
+ + G + L++A ++ ++ + A +N + TPL A + +
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA------HVNAAD 483
LL +G D D G T L A G L V +L + + A +
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLA---------SVGVLTQSCTTPHLHSILKATN 114
Query: 484 SEGRTALIASAYMGHADIVSSILEYDADINQQDN-DGRTALSVSALCVPSSDGYAKVVSI 542
G T L ++ G+ IV ++ AD+N Q+ +GRTAL ++ +VS+
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL-----QNPDLVSL 169
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL-WAAAS 599
LL+ GA V+ +G +P + + + L + + + + S
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227
Score = 176 bits (449), Expect = 3e-50
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 21/212 (9%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
L + QT L++A + + LL AG + D G TPL A G A V +
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 96
Query: 430 LLQSGAD------VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
L QS + ++ G T L A+ G+L +V+LL++ GA VNA +
Sbjct: 97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG---------IVELLVSLGADVNAQE 147
Query: 484 -SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI 542
GRTAL + + + D+VS +L+ AD+N+ G + ++ ++
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW-----GRPSTRIQQQ 202
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
L + + E + E
Sbjct: 203 LGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 176 bits (448), Expect = 3e-50
Identities = 47/251 (18%), Positives = 88/251 (35%), Gaps = 30/251 (11%)
Query: 481 AADSEGRTALIASAYMGHADIVSSILEY----DADINQQDNDGRTALSVSALCVPSSDGY 536
+G + L + + ++ A +N Q+N +T L ++ +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-----NQ 57
Query: 537 AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI------DKSG 590
++ LL G + D G TPL +A +G +L ++ + +G
Sbjct: 58 PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117
Query: 591 RTPLWAAASMGHASCVALLLFWGAYVDTID-AEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
T L A+ G+ V LL+ GA V+ + GRT L +A N D+V+ LL G
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG--- 174
Query: 650 GCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL 709
A ++ G++P + + L + + Q+ +
Sbjct: 175 ---A------DVNRV--TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223
Query: 710 AAQDGHYHLVE 720
+ E
Sbjct: 224 DTESEFTEFTE 234
Score = 173 bits (442), Expect = 2e-49
Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 21/234 (8%)
Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC 573
Q DG + L ++ + +V+ + A ++ ++ TPL +A ++
Sbjct: 3 QLTEDGDSFLHLAIIH-EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA------YVDTIDAEGRTVL 627
E LL D + D G TPL A G + V +L + + G T L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 628 SVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCR 687
+A+ G + +V L+ G A ++ Q N G T LH A + ++
Sbjct: 122 HLASIHGYLGIVELLVSLG------A------DVNAQEPCN-GRTALHLAVDLQNPDLVS 168
Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
LL+ GA V++V G +P L + + L Q Q +
Sbjct: 169 LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ-QLGQLTLENLQMLPESEDEE 221
Score = 117 bits (296), Expect = 8e-30
Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 583 QDHIDKSGRTPLWAAASMGHAS----CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
+ + + G + L A + + + A+++ + +T L +A ++
Sbjct: 1 KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60
Query: 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA---- 694
LL G + RD G TPLH A +G L ++
Sbjct: 61 AEALLGAG------------CDPEL--RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 695 --KVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK-SHDGRTAL 741
+ + +G L LA+ G+ +VE+ + A+VN + +GRTAL
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTAL 155
Score = 87.6 bits (218), Expect = 2e-19
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILLEAGANIN 405
LH + +++ L S A D+ + +G+TAL++A D V +LL+ GA++N
Sbjct: 121 LHLASIHGYLGIVE-LLVSLGA-DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Query: 406 HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
+G++P + + + + L Q + E T
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 47.2 bits (113), Expect = 7e-06
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+A + LL G DP+ D G +A + G + +L
Sbjct: 51 LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Score = 46.8 bits (112), Expect = 1e-05
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSE 943
+A + D V LLL GAD + G + +++ + + L Q ++ +
Sbjct: 157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212
Score = 42.9 bits (102), Expect = 2e-04
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHC-GRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A+ G+ V LL+ GAD + C GR A +A + + V LLK AD
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Score = 36.8 bits (86), Expect = 0.019
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 889 IAAQEGH----EDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A + +R + A ++ + +A + E LL D
Sbjct: 14 LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70
Score = 34.4 bits (80), Expect = 0.11
Identities = 2/43 (4%), Positives = 7/43 (16%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETV 931
+ + L + + +S
Sbjct: 190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 192 bits (489), Expect = 8e-56
Identities = 46/305 (15%), Positives = 84/305 (27%), Gaps = 79/305 (25%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
+ GQ +L + G + L +S G +V+ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
D + + G TAL A GH E+ VK L+ G +VNAADS+G T L +A
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEI---------VKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
+ + ++E A + D
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYS-----------------------------------D 136
Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
+ EG+ + L + ++K LW
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD----------- 185
Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
+ + + T++ + + D + R D G+ P
Sbjct: 186 ELPMKEGDCMTII----HREDEDEIEWWWARL-------------------NDKEGYVPR 222
Query: 675 HYAAI 679
+ +
Sbjct: 223 NLLGL 227
Score = 165 bits (421), Expect = 1e-46
Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 21/227 (9%)
Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
+ G+ +L K S + G +V + + LL ++ EG D+ +
Sbjct: 2 EITGQVSLPPGK-----RTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQR 55
Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
++ D + G T L A GH V L+ +G V+ D++G T L AA+ N
Sbjct: 56 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
Query: 636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQ-HRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
+ V L++ G ++ + D EG+ + + L
Sbjct: 116 VQVCKFLVESG------------AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Query: 695 KVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
K+ ++ L L E + + +
Sbjct: 164 KMGIMNKGVIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEIEW 208
Score = 161 bits (409), Expect = 7e-45
Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 25/235 (10%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ Q L N + ++ + L ++ +G D VQ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGS-ERIAHGM-RVK-FNPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
+ + + EG T L +A GH+ +VK L+Q G +VN +D G T L AA +++
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ- 117
Query: 460 TIVLGPLCVVKLLLAAGAHVNAA---DSEGRTALIASAYMGHADIVSSILEYDADINQQD 516
V K L+ +GA V A D + G+ + + +
Sbjct: 118 --------VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169
Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAK--VDHEDREGMTPLLVAAFEGH 569
AL + +++G + H + E A
Sbjct: 170 KGVIYALWDYE--------PQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 158 bits (402), Expect = 5e-44
Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 19/197 (9%)
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
+ G L R + + + L ++ G V +++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
+ EG T L A G+ ++V L+ G+ + D+ GWTP
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV--------------NVNAADSDGWTP 106
Query: 674 LHYAAIEGHEEVCRALLEAGAKV---DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
LH AA + +VC+ L+E+GA V D A ++G+ + FL + +
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ-FLYGVQEKM 165
Query: 731 NQKSHDGRTALRVNMKN 747
+ AL
Sbjct: 166 GIMNKGVIYALWDYEPQ 182
Score = 50.7 bits (122), Expect = 6e-07
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
A GH + V+ L+ +G + +D G AA + + L++ A
Sbjct: 76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135
Query: 944 YFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
+ G+ + L
Sbjct: 136 DMQTAADKCEEMEEGYTQCSQFLYGVQEK 164
Score = 47.6 bits (114), Expect = 7e-06
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
++ EG D V+ +++ DP + G A A +GH E V L++ +
Sbjct: 43 DSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Score = 44.5 bits (106), Expect = 6e-05
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+ + +G K + ++ G + V R++ + D
Sbjct: 11 PGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDD 62
Score = 40.7 bits (96), Expect = 0.001
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVL 932
+EG+ C + L + A + +
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188
Score = 32.6 bits (75), Expect = 0.43
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 17/97 (17%)
Query: 333 VSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVD 392
V +T D + + + E + FL + + +++K AL Q D
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQ-FLYGVQE-KMGIMNKGVIYALWDYEPQN-DD 185
Query: 393 AVQILLEAGANINH--------------TDCEGWTPL 415
+ + I H D EG+ P
Sbjct: 186 ELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPR 222
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 187 bits (477), Expect = 8e-55
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 21/196 (10%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+ +G AV++ L+ N +N D G++PL A G SAVV++L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GA +N + G T L AA GH + +V+ LL A +NA + G L +
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRD---------IVQKLLQYKADINAVNEHGNVPLHYA 112
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
+ G + ++ A ++ + G + + + + + G ++
Sbjct: 113 CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK-----APLRELLRERAEKMGQNLNR- 166
Query: 554 DREGMTPLLVAAFEGH 569
P ++G
Sbjct: 167 -----IPYKDTFWKGT 177
Score = 164 bits (417), Expect = 9e-47
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 16/181 (8%)
Query: 554 DREGMTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
E M + EG+ + L+N E D + D G +PL A G ++ V +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
GA ++ ++ T L +AA+ G+ D+V +LL ++ + G
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA------------DINA--VNEHGNV 107
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
PLHYA G ++V L+ GA V + G P+ A L E E+ N+N+
Sbjct: 108 PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE-RAEKMGQNLNR 166
Query: 733 K 733
Sbjct: 167 I 167
Score = 162 bits (413), Expect = 3e-46
Identities = 49/212 (23%), Positives = 72/212 (33%), Gaps = 48/212 (22%)
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCV 468
E + + G++ V+L L + D+N D G + L A G V
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAV--------- 54
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
V++L+ GA +N + T L +A GH DIV +L+Y ADIN + G L
Sbjct: 55 VEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL----- 109
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
H A F G V E L+ N A +K
Sbjct: 110 -----------------------H----------YACFWGQDQVAEDLVANGALVSICNK 136
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
G P+ A + G ++ I
Sbjct: 137 YGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168
Score = 160 bits (408), Expect = 2e-45
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 10/170 (5%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
+ C E N ++ +L DL D HG + L+ A +G V++L+ GA IN
Sbjct: 9 IFTQCREGNAVAVRLWL-DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
+ TPL A+ GH +V+ LLQ AD+N + G L A + G +
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ-------- 119
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD 516
V + L+A GA V+ + G + + + + ++N+
Sbjct: 120 -VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168
Score = 152 bits (387), Expect = 1e-42
Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 59/235 (25%)
Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVV 540
E + G+A V L+ D+NQ D+ G + L + +G + VV
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC-----REGRSAVV 55
Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM 600
+L+ +GA+++ +R TPL +AA GHRD+ + LL+ +AD + +++ G PL A
Sbjct: 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW 115
Query: 601 GHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGS 660
G L+ GA V
Sbjct: 116 GQDQVAEDLVANGALVSI------------------------------------------ 133
Query: 661 LDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
+ G P+ A E + + G ++++ P G
Sbjct: 134 -----CNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI------PYKDTFWKGT 177
Score = 55.1 bits (134), Expect = 8e-09
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH C + + L + A + + +K+G+ ++ A + + G N+N
Sbjct: 109 LHYACFWGQDQVAE-DLVANGA-LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166
Query: 407 TDCEGWTPLRSASWGGHS 424
P + W G +
Sbjct: 167 I------PYKDTFWKGTT 178
Score = 54.0 bits (131), Expect = 2e-08
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ + ++G+ V ++L+ E ++NQ G + L
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL 43
Score = 49.0 bits (118), Expect = 1e-06
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A G + L+ GA + G A E +
Sbjct: 111 YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157
Score = 47.0 bits (113), Expect = 5e-06
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA GH D V+ LL Y AD + G A G + L+ A
Sbjct: 78 LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Score = 46.7 bits (112), Expect = 6e-06
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A +EG V +L+ GA + +AA GH + V +LL+ AD
Sbjct: 45 WACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Score = 40.5 bits (96), Expect = 8e-04
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGA-DPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+EG+ VRL L D D G + A + G V L+ + A
Sbjct: 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Score = 35.1 bits (82), Expect = 0.048
Identities = 4/40 (10%), Positives = 7/40 (17%), Gaps = 6/40 (15%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH 928
A E G + ++ G
Sbjct: 144 KAKAPLRELLRERAEKMGQNLNRIP------YKDTFWKGT 177
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 185 bits (470), Expect = 2e-53
Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 16/240 (6%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
N+A + + +L + TD + T L A GH+ +V+ LLQ G V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N D G + L AA G E +VK LL GAHVNA + G T L +A
Sbjct: 67 NDKDDAGWSPLHIAASAGXDE---------IVKALLVKGAHVNAVNQNGCTPLHYAASKN 117
Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
+I +LE A+ + +D+ TA+ +A + G K+V ILL A + +D EG
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAA-----AKGNLKMVHILLFYKASTNIQDTEG 172
Query: 558 MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVD 617
TPL +A E + + L+ A +K +TPL A G + L G
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 183 bits (465), Expect = 1e-52
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 16/236 (6%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
A G + + +L + +D RTAL A GH E+ V+
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEI---------VE 57
Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
LL G VN D G + L +A G +IV ++L A +N + +G T L +A
Sbjct: 58 FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA--- 114
Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSG 590
S ++ +LLE GA D +D T + AA +G+ + ILL +A + D G
Sbjct: 115 --SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 591 RTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
TPL A L+ GA + + E +T L VA G + ++ + L G
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEG 226
Score = 177 bits (450), Expect = 1e-50
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 30/256 (11%)
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
+ A G E + + +LA + D + RTAL + GH +I
Sbjct: 5 VSNIMICNLAYSGKLDE---------LKERILADKSLATRTDQDSRTALHWACSAGHTEI 55
Query: 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPL 561
V +L+ +N +D+ G + L ++A S G ++V LL KGA V+ ++ G TPL
Sbjct: 56 VEFLLQLGVPVNDKDDAGWSPLHIAA-----SAGXDEIVKALLVKGAHVNAVNQNGCTPL 110
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
AA + ++ +LLE A+ D D T + AA+ G+ V +LLF+ A + D
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
EG T L +A + ++ L+ +G + TPL A G
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGA--------------SIYIENKEEKTPLQVAK--G 214
Query: 682 HEEVCRALLEAGAKVD 697
+ L G +
Sbjct: 215 GLGLILKRLAEGEEAS 230
Score = 169 bits (429), Expect = 8e-48
Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 18/240 (7%)
Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA 402
N + + L ++ LK + + ++ D+ +TAL+ A G + V+ LL+ G
Sbjct: 7 NIMICN-LAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
+N D GW+PL A+ G +VK LL GA VN + G T L AA E
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE---- 120
Query: 463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTA 522
+ +LL GA+ +A D TA+ +A G+ +V +L Y A N QD +G T
Sbjct: 121 -----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP 175
Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
L ++ + + L+ +GA + E++E TPL VA G + L +
Sbjct: 176 LHLAC-----DEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEE 228
Score = 157 bits (399), Expect = 8e-44
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 22/237 (9%)
Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+++ S ++ +L + D++ T L A GH ++ E L
Sbjct: 5 VSNIMICNLAY-----SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 59
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
L+ + D +G +PL AAS G V LL GA+V+ ++ G T L AA++
Sbjct: 60 LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
++ LL+ G + +D+ T +H AA +G+ ++ LL A
Sbjct: 120 EIAVMLLEGGA--------------NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV--NMKNVTKL 751
+ D +G PL LA + + + Q A++ ++ + +T L+V +
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGGLGLILK 221
Score = 134 bits (338), Expect = 1e-35
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 15/201 (7%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
+ +A ++ E +L +++ D+ RT L A S GH V LL G V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ D G + L +AA+ G ++V LL +G + G TPLHY
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGA--------------HVNAVNQNGCTPLHY 112
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
AA + E+ LLE GA D D+ + AA G+ +V + L +A+ N + +
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTE 171
Query: 737 GRTALRVNMKNVTKLSFWYLL 757
G T L + +L+
Sbjct: 172 GNTPLHLACDEERVEEAKFLV 192
Score = 111 bits (279), Expect = 1e-27
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
S A S +L + D + RT L A + G+ ++V LL G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-- 63
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
+D+ GW+PLH AA G +E+ +ALL GA V+ V+ +G PL
Sbjct: 64 ----V--------PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLH 111
Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLL 757
AA + + M LE AN + K H TA+ LL
Sbjct: 112 YAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Score = 46.0 bits (109), Expect = 2e-05
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
A GH + V LL G D G + +AA +G + +++ L
Sbjct: 46 WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105
Query: 949 YY--YYNSAKSGHETVLRLLKQYADDI 973
+ +A + +L + +
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANP 132
Score = 41.4 bits (97), Expect = 7e-04
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A ++ +L + +D R A A +GH E V LL+
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 181 bits (461), Expect = 2e-52
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 20/208 (9%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+DK+G+ + + + L N+ D TPL A G + L+++
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVEN 57
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
+ D+ G TAL A L + + LL+ G++VN D G+T L+ S
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLG---------IAEKLLSKGSNVNTKDFSGKTPLMWS 108
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
G++++ +LE+ A++N ++ +G T L V++ G +++V LLE GA +
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY-----GRSEIVKKLLELGADISAR 163
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEA 581
D G+T A G ++V +I E
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 172 bits (440), Expect = 1e-49
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 22/206 (10%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D + V + E +IN FL+ D + +T L VA G +A+ L+E
Sbjct: 5 DKNGEIVEK-IKDEKSINQNLDFLR-------NYRDSYNRTPLMVACMLGMENAIDKLVE 56
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
+ D EG T L A + + LL G++VN D G+T L + G+ E+
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
LL GA+VN + EG T LI ++ G ++IV +LE ADI+ +D G
Sbjct: 117 ---------SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167
Query: 520 RTALSVSALCVPSSDGYAKVVSILLE 545
TA + + G +V+ I E
Sbjct: 168 LTAEASAR-----IFGRQEVIKIFTE 188
Score = 154 bits (391), Expect = 5e-43
Identities = 51/212 (24%), Positives = 79/212 (37%), Gaps = 25/212 (11%)
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
+ D +G + + + L + D TPL+VA G +
Sbjct: 2 SHMDKNGEIVEKIKDEK-----SINQNLDFLRN--YR----DSYNRTPLMVACMLGMENA 50
Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
+ L+EN + D G T L A LL G+ V+T D G+T L +
Sbjct: 51 IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110
Query: 633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692
G ++ LL+ G A + R+ G TPL A+ G E+ + LLE
Sbjct: 111 FGYSEMSYFLLEHG------A--------NVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
GA + D G A G ++++F E
Sbjct: 157 GADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 153 bits (389), Expect = 9e-43
Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 28/219 (12%)
Query: 476 GAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG 535
G+H+ D G + D N +D+ RT L V+ + G
Sbjct: 1 GSHM---DKNGEIVEKIKDEKSINQNL------DFLRNYRDSYNRTPLMVACML-----G 46
Query: 536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLW 595
+ L+E K++ +D EG T L+ A + E LL ++ + D SG+TPL
Sbjct: 47 MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106
Query: 596 AAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGG 655
+ G++ LL GA V+ + EG T L VA+ G ++V +LL+ G A
Sbjct: 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG------A-- 158
Query: 656 RQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
D RD G T A I G +EV + E
Sbjct: 159 ------DISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 142 bits (361), Expect = 5e-39
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 21/190 (11%)
Query: 552 HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
H D+ G + + + L + D RTPL A +G + + L+
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAIDKLVE 56
Query: 612 WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW 671
++ D EG T L A + + +LL +G + +D G
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS--------------NVNTKDFSGK 102
Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
TPL ++ I G+ E+ LLE GA V+ + +G PLI+A++ G +V+ LE A+++
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADIS 161
Query: 732 QKSHDGRTAL 741
+ G TA
Sbjct: 162 ARDLTGLTAE 171
Score = 44.3 bits (106), Expect = 4e-05
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+A++ G + V+ LL GAD D G A A G + V+++
Sbjct: 140 VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 42.8 bits (102), Expect = 1e-04
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A G E+ + L+ + D G A A K+ +LL + ++
Sbjct: 41 VACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Score = 42.8 bits (102), Expect = 2e-04
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A + LL G++ D G+ + G+ E LL+ A+
Sbjct: 74 WAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Score = 40.8 bits (97), Expect = 7e-04
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+ G+ + LL +GA+ + G VA+K G +++ L
Sbjct: 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Score = 35.1 bits (82), Expect = 0.058
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ + ++ L ++K L A D+ D G TA A G + ++I E
Sbjct: 131 NLEGETPLIVASKYGRSEIVK-KLLELGA-DISARDLTGLTAEASARIFGRQEVIKIFTE 188
Query: 400 AGA 402
Sbjct: 189 VRR 191
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 179 bits (458), Expect = 2e-52
Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 15/179 (8%)
Query: 401 GANINH-TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
G++ +H + L A+ G V++L+ +GADVN D G T L AA+ GHLE
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE- 61
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
+V++LL GA VNA D G T L +A GH +IV +L+ AD+N D +G
Sbjct: 62 --------IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
T L ++A+ G+ ++V +LL+ GA V+ +D+ G T ++ G+ D+ EIL +
Sbjct: 114 HTPLHLAAMF-----GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 173 bits (442), Expect = 3e-50
Identities = 70/169 (41%), Positives = 94/169 (55%), Gaps = 14/169 (8%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
L AA G D V+IL+ GA++N D GWTPL A++ GH +V++LL++GADV
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N D G T LR AA GHLE +V++LL GA VNA D EG T L +A G
Sbjct: 74 NAVDHAGMTPLRLAALFGHLE---------IVEVLLKNGADVNANDMEGHTPLHLAAMFG 124
Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546
H +IV +L+ AD+N QD G+TA +S +G + IL +
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISI-----DNGNEDLAEILQKL 168
Score = 154 bits (393), Expect = 1e-43
Identities = 63/180 (35%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 546 KGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
+G+ H + LL AA G D IL+ N AD + D SG TPL AA GH
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
V +LL GA V+ +D G T L +AA G++++V LL G A D
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG------A--------DVN 107
Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
D G TPLH AA+ GH E+ LL+ GA V+ D G+ ++ +G+ L E+ +
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 150 bits (383), Expect = 3e-42
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 11/163 (6%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
L + + ++ L + A D+ D G T L++AA G ++ V++LL+ GA++N
Sbjct: 18 LLEAARAGRDDEVR-ILMANGA-DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D G TPLR A+ GH +V++LL++GADVN +DM G T L AA GHLE
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE-------- 127
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509
+V++LL GA VNA D G+TA S G+ D+ + + +
Sbjct: 128 -IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 148 bits (376), Expect = 3e-41
Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 20/183 (10%)
Query: 510 ADIN-QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG 568
+ + +D L +A G V IL+ GA V+ ED G TPL +AAF G
Sbjct: 4 SHHHHHHGSDLGKKLLEAARA-----GRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58
Query: 569 HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
H ++ E+LL+N AD + +D +G TPL AA GH V +LL GA V+ D EG T L
Sbjct: 59 HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLH 118
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
+AA G++++V LL G A D +D G T + G+E++
Sbjct: 119 LAAMFGHLEIVEVLLKNG------A--------DVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 689 LLE 691
L +
Sbjct: 165 LQK 167
Score = 109 bits (275), Expect = 1e-27
Identities = 46/122 (37%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
++ L AA G D V L+ G A D D GWTPLH AA
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANG------A--------DVNAEDASGWTPLHLAAF 56
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
GH E+ LL+ GA V+ VD+ G PL LAA GH +VE+ L+ A+VN +G T
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHT 115
Query: 740 AL 741
L
Sbjct: 116 PL 117
Score = 47.7 bits (115), Expect = 3e-06
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA GH + V +LL GAD D G+ AF ++ +G+E + +L
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 45.8 bits (110), Expect = 1e-05
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA GH + V +LL GAD DH G R+AA GH E V LLK AD
Sbjct: 53 LAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Score = 45.4 bits (109), Expect = 1e-05
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA+ G +D VR+L+ GAD D G +AA +GH E V LLK AD
Sbjct: 20 EAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Score = 45.0 bits (108), Expect = 2e-05
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA GH + V +LL GAD +D G +AA GH E V LLK AD
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 176 bits (449), Expect = 5e-51
Identities = 43/182 (23%), Positives = 68/182 (37%), Gaps = 19/182 (10%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
G + G + A++ E TP +A+ + LL
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-E 65
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIA 492
DV+ D GRTAL A G + V+LL AGA ++ D G TAL
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDK---------CVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
+A ++V +++E ADI +D G TAL ++ ++ G ++
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-----LKTTPKGNPMQFGRRIGL 171
Query: 553 ED 554
E
Sbjct: 172 EK 173
Score = 170 bits (434), Expect = 5e-49
Identities = 46/188 (24%), Positives = 66/188 (35%), Gaps = 19/188 (10%)
Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
+ T EG GHS ADV T AA +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA- 59
Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-NDG 519
+ LL V+A D GRTAL+ A +G V + E AD++ +D G
Sbjct: 60 --------LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
TAL ++A +VV L+E GA ++ ED G+T L +A ++
Sbjct: 111 LTALHMAAGY-----VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165
Query: 580 EADQDHID 587
Sbjct: 166 GRRIGLEK 173
Score = 168 bits (429), Expect = 3e-48
Identities = 48/180 (26%), Positives = 65/180 (36%), Gaps = 20/180 (11%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
EG L+ +GH AD + TP W AA ++ LL
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLL-EDRD 68
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRD-NCGWTPL 674
VD +D GRT L A G+ V L + G D HRD G T L
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAG--------------ADLDHRDMRGGLTAL 114
Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734
H AA EV AL+E GA ++ D G L LA + ++ + + +
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ-FGRRIGLEK 173
Score = 143 bits (362), Expect = 3e-39
Identities = 47/218 (21%), Positives = 65/218 (29%), Gaps = 41/218 (18%)
Query: 476 GAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG 535
+ EG + GH+ AD+ ++ T +A
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAA-----RKA 55
Query: 536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID-KSGRTPL 594
+ +S LLE VD D G T LL A G +L E AD DH D + G T L
Sbjct: 56 DEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 114
Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG 654
AA V L+ GA ++ D G T L +A
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG-------------- 160
Query: 655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692
P+ + G E+V L
Sbjct: 161 -----------------NPMQFGRRIGLEKVINVLEGQ 181
Score = 129 bits (327), Expect = 1e-34
Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 20/156 (12%)
Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
G GH+ + A + +E T AA + + ++QLL+
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVVSEYETPWWTAARKADEQALSQLLEDR 67
Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD-NDGRA 705
D D G T L + A G ++ R L EAGA +D D G
Sbjct: 68 ---------------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112
Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
L +AA +VE +E A++ + G TAL
Sbjct: 113 ALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTAL 147
Score = 124 bits (313), Expect = 1e-32
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
S+ ++ + + L L+ D++ VD++G+TAL A G V++L E
Sbjct: 41 VSEYETPWWTAARKADEQALSQLLEDR---DVDAVDENGRTALLFVAGLGSDKCVRLLAE 97
Query: 400 AGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
AGA+++H D G T L A+ VV+ L++ GAD+ D G TAL A
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 157
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAAD 483
+ G +
Sbjct: 158 ---------PKGNPMQFGRRIGLEK 173
Score = 81.8 bits (203), Expect = 5e-18
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
+ G TAL++AA + V+ L+E GA+I D G T L A + +Q G
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166
Query: 435 ADVNCSDM 442
+ +
Sbjct: 167 RRIGLEKV 174
Score = 56.0 bits (136), Expect = 4e-09
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
+AA + V L+ GAD + D G A +A + T Q+
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG--------- 166
Query: 949 YYYYNSAKSGHETVLRLL 966
+ G E V+ +L
Sbjct: 167 ------RRIGLEKVINVL 178
Score = 47.9 bits (115), Expect = 3e-06
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGHETVLRLL 935
A G + CVRLL GAD H D G A +AA V+ L
Sbjct: 82 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Score = 43.3 bits (103), Expect = 1e-04
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
I ++GH + AD + AA+ E L L + D
Sbjct: 20 IEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLEDRD 68
Score = 37.9 bits (89), Expect = 0.006
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 698 QVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ +G ++ +DGH A+V + T
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADVVSE---YETPW 48
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 171 bits (436), Expect = 1e-49
Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 23/178 (12%)
Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL 457
+E A + L +A+ G V+ LL++GA+ N + GR ++ G
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57
Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAADSEGRT-ALIASAYMGHADIVSSILEYDADINQQD 516
V +LLL GA N AD T + +A G D + + A ++ +D
Sbjct: 58 R---------VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108
Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
GR + ++ G+ V L G + A EG D+ +
Sbjct: 109 AWGRLPVDLAE-----ELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSDIPD 156
Score = 168 bits (427), Expect = 2e-48
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 11/150 (7%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
+ L AA +G V+ V+ LLEAGAN N + G P++ G + V +LLL G
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHG 67
Query: 435 ADVNCSDMGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
A+ NC+D T + AA G L+ + +L AGA ++ D+ GR + +
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDT---------LVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTAL 523
+GH D+ + ++ A
Sbjct: 119 EELGHRDVARYLRAAAGGTRGSNHARIDAA 148
Score = 155 bits (395), Expect = 4e-44
Identities = 44/178 (24%), Positives = 63/178 (35%), Gaps = 23/178 (12%)
Query: 544 LEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA 603
+E A E L AA G + LLE A+ + + GR P+ MG A
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57
Query: 604 SCVALLLFWGAYVDTIDAEGRTV-LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
LLL GA + D T + AA +G +D + L G A
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG------A--------R 103
Query: 663 EQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVE 720
RD G P+ A GH +V R L A ++ + A +G + +
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR-----IDAAEGPSDIPD 156
Score = 155 bits (394), Expect = 6e-44
Identities = 47/209 (22%), Positives = 66/209 (31%), Gaps = 54/209 (25%)
Query: 431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL 490
++ A + L AA G +E V+ LL AGA+ NA +S GR +
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEE---------VRALLEAGANPNAPNSYGRRPI 49
Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
MG A + +L + A+ N D T
Sbjct: 50 QV-MMMGSARVAELLLLHGAEPNCADPATLT----------------------------- 79
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
P+ AA EG D +L A D D GR P+ A +GH L
Sbjct: 80 --------RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
G + AA+G D+
Sbjct: 132 AAAG-----GTRGSNHARIDAAEGPSDIP 155
Score = 136 bits (345), Expect = 2e-37
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 18/157 (11%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
L A + ++ L A + + +G+ + V G ++LL GA N
Sbjct: 16 LATAAARGRVEEVR-ALLEAGA-NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC 72
Query: 407 TDCEGWT-PLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
D T P+ A+ G + +L ++GA ++ D GR + A GH +
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD------- 125
Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
V + L AA ++ A G +DI
Sbjct: 126 --VARYLRAAAGGTRGSNHARIDAA-----EGPSDIP 155
Score = 53.6 bits (130), Expect = 2e-08
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA+EG D + +L GA D GR +A + GH V R L
Sbjct: 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 51.7 bits (125), Expect = 9e-08
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD----DSEY 944
AA G + VR LL GA+P + GR +V LL A+ D
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPAT 77
Query: 945 F---VHYYYYYNSAKSGH-ETVLRLLKQYAD 971
VH +A+ G +T++ L + A
Sbjct: 78 LTRPVHD-----AAREGFLDTLVVLHRAGAR 103
Score = 45.5 bits (109), Expect = 1e-05
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETV 931
+A + GH D R L + G N R+ A G +
Sbjct: 117 LAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDI 154
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 171 bits (435), Expect = 2e-49
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 17/169 (10%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQS-GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
L A+ G V+ LL + + G+TAL+ +G +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAI---------A 51
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
LL GA N D+ G + + +A G D + ++E+ AD+N D G + ++
Sbjct: 52 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
G+ VVS L + + D G+TPL +A G +D+ +IL
Sbjct: 112 -----GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 162 bits (412), Expect = 2e-46
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 378 GQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
L+ AA +G V V+ LL + + + G T L+ + G +A+ LL+ GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
N D G + + AA G L+ +K+L+ GA VN D G + +
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLD---------TLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
GH +V S L ++D++++D G T L ++ G +V IL
Sbjct: 112 GHTAVV-SFLAAESDLHRRDARGLTPLELAL-----QRGAQDLVDILQG 154
Score = 150 bits (381), Expect = 4e-42
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
L A ++ ++ L + +++ G+TAL V G LL+ GA+ N
Sbjct: 6 LSGAAARGDVQEVRRLLHRELV-HPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D G +P+ A+ G +K+L++ GADVN D G + A GH
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA-------- 115
Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
VV L A + ++ D+ G T L + G D+V
Sbjct: 116 -VVSFLA-AESDLHRRDARGLTPLELALQRGAQDLV 149
Score = 144 bits (366), Expect = 4e-40
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 17/170 (10%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
L AA G LL E D +++ G+T L G + LL GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
+ D G + + AA G +D + L++ G ++ D G P+H
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHG------------ADVNVP--DGTGALPIH 106
Query: 676 YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
A EGH V L A + + + D G PL LA Q G LV++
Sbjct: 107 LAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 144 bits (365), Expect = 6e-40
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 8/160 (5%)
Query: 486 GRTALIASAYMGHADIVSSILE-YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
L +A G V +L + + G+TAL V G + LL
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF------GSTAIALELL 55
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
++GA + +D G +P+ AA G D ++L+E+ AD + D +G P+ A GH +
Sbjct: 56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115
Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
V+ L + + DA G T L +A +G D+V+ L
Sbjct: 116 VVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 131 bits (333), Expect = 1e-35
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 590 GRTPLWAAASMGHASCVALLLF-WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
L AA+ G V LL + D ++ G+T L G+ + +LL +G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQG-- 58
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
A +D G +P+H AA G + + L+E GA V+ D G P+
Sbjct: 59 ----A--------SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106
Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
LA Q+GH +V + ++++++ G T L
Sbjct: 107 LAVQEGHTAVVSFLAAE--SDLHRRDARGLTPL 137
Score = 73.2 bits (181), Expect = 3e-15
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D+ S +H ++ LK L A D+ + D G +++A +G V L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLK-VLVEHGA-DVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
++++ D G TPL A G +V +L
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 51.3 bits (124), Expect = 1e-07
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
AA+ G D +++L+ +GAD D G +A + GH V+ L +D
Sbjct: 74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125
Score = 48.6 bits (117), Expect = 1e-06
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
G LL GA P D G + AA++G +T+ L++ AD D
Sbjct: 41 QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100
Query: 944 YF--VHYYYYYNSAKSGHETVLRLLKQYAD 971
+H + + GH V+ L +D
Sbjct: 101 GALPIHL-----AVQEGHTAVVSFLAAESD 125
Score = 40.5 bits (96), Expect = 6e-04
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLH-YGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
AA G VR LLH P + G+ A +V L LLKQ A
Sbjct: 8 GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60
Score = 36.2 bits (85), Expect = 0.017
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLE 399
DL D G T L +A +G D V IL
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 178 bits (453), Expect = 2e-49
Identities = 51/388 (13%), Positives = 100/388 (25%), Gaps = 84/388 (21%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
+ + +L A N N + + +A + + + +D + +LL +
Sbjct: 62 QVRQLLCLYYAHYNRNAKQLW---SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 118
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDM--GGRTALRAAAWGGHLEV 459
+ E + R A+ GH V+ L + + + A R AA GHL
Sbjct: 119 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH- 177
Query: 460 TIVLGPLCVVKLLLAAGAHVNAAD--SEGRTAL-IASAYMGHADIVSSILEYDADINQQD 516
V+ L A +E A A+ GH ++++ +L+ + +
Sbjct: 178 --------VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229
Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
G V + ++ +E ++ +G D+
Sbjct: 230 IHE------------FEYGEKYVNPFIARHVNRL----KEMHDAFKLSNPDGVFDLVT-- 271
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
G L +L +I
Sbjct: 272 -------KSECLQGFYMLRNLIRRND---------------------EVLLDDIRFLLSI 303
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
+ L L A G++ C LL + +
Sbjct: 304 PGIKALAPTAT------------------IPGDANELLRLALRLGNQGACALLLSIPSVL 345
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLE 724
+ + G L + LE
Sbjct: 346 ALTKANN---YYINETGGRLDLRAVALE 370
Score = 156 bits (396), Expect = 9e-42
Identities = 58/374 (15%), Positives = 98/374 (26%), Gaps = 73/374 (19%)
Query: 389 GFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTAL 448
+ +A+ I L N+ L + ++ K L
Sbjct: 45 SYKEAIHIFLPGTKNMEQVR-----QLLCLYYAHYNRNAKQLWSDAHKKGIK---SEVIC 96
Query: 449 RAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY 508
AA G L + LLL + V +E A +A GH +++ + E
Sbjct: 97 FVAAITGCSSA------LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150
Query: 509 DADINQQD--NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED--REGMTPLLVA 564
+ A ++A +G+ V++ L E E A
Sbjct: 151 APTEIMAMIQAENYHAFRLAA-----ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205
Query: 565 AFE-GHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
A GH +V LL+ + + G + + E
Sbjct: 206 AVGRGHHNVINFLLDCPVMLAYAEI-------HEFEYGEKYVNPFIARHVNRL----KEM 254
Query: 624 RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE 683
++ G D+V + G+ L E
Sbjct: 255 HDAFKLSNPDGVFDLV-----------------------TKSECLQGFYMLRNLIRRNDE 291
Query: 684 ---EVCRAL-----LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ-------YEA 728
+ R L ++A A + D L LA + G+ + L
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN 351
Query: 729 NVNQKSHDGRTALR 742
N GR LR
Sbjct: 352 NYYINETGGRLDLR 365
Score = 121 bits (305), Expect = 9e-30
Identities = 38/283 (13%), Positives = 76/283 (26%), Gaps = 42/283 (14%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
+ + ++N ++++L + + ++ A +AA G + +
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180
Query: 396 ILLEAGANINHTDC--EGWTPLRSASWG-GHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452
L E E + R A+ G GH V+ LL + A
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEF 233
Query: 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADI 512
G V + + A S G D+V+
Sbjct: 234 EYGE---------KYVNPFIARHVNRLKE----MHDAFKLSNPDGVFDLVT--------- 271
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSIL-----LEKGAKVDHEDREGMTPLLVAAFE 567
+ G L + + + L ++ A + L +A
Sbjct: 272 KSECLQGFYMLRNLIRR--NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329
Query: 568 GHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
G++ C +LL + + + G A+ L
Sbjct: 330 GNQGACALLLSIPSVLALTKA---NNYYINETGGRLDLRAVAL 369
Score = 73.4 bits (180), Expect = 6e-14
Identities = 43/334 (12%), Positives = 87/334 (26%), Gaps = 49/334 (14%)
Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE---EVCR 687
N++ V QLL + + D + AAI G +
Sbjct: 55 PGTKNMEQVRQLL--CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLC 112
Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY-EANVNQKSHDGRTALRVNMK 746
LL + V + + LAA++GH H++ E + + A R+ +
Sbjct: 113 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 172
Query: 747 N----VTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEY-----KKRL 797
N V L L P + + + L
Sbjct: 173 NGHLHVLN----RLC----------ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218
Query: 798 HILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLN----DGHL-IHAVDLSQRR 852
+++ A + ++ + K + DG + +
Sbjct: 219 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG 278
Query: 853 QTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISI-----------AAQEGHEDCVRL 901
+ + DE D + + K + A + G++ L
Sbjct: 279 FYMLRNLI-RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337
Query: 902 LLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
LL + + N + + G + +
Sbjct: 338 LLSIPSVLALTK---ANNYYINETGGRLDLRAVA 368
Score = 70.0 bits (171), Expect = 8e-13
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 24/122 (19%)
Query: 371 LELVDKH----GQTALNVAAHQGFVDAVQIL--------LEAGANINHTDCEGWTPLRSA 418
+LV K G L + + + ++A A + LR A
Sbjct: 267 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326
Query: 419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH 478
G+ LLL + + + GG L++ + L H
Sbjct: 327 LRLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDL---------RAVALEHHHH 374
Query: 479 VN 480
+
Sbjct: 375 HH 376
Score = 54.2 bits (130), Expect = 1e-07
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 342 KNQSVLHKLCAENNINLLKT--FLKSCEAL----DLELVDKHGQTALNVAAHQGFVDAVQ 395
+ +L L N+ LL FL S + + L +A G A
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336
Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
+LL + + T GG + + L+ +
Sbjct: 337 LLLSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHHHHH 376
Score = 50.7 bits (121), Expect = 1e-06
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 888 SIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEYFV 946
+I D + LLL K AFR+AA++GH + RL + + +
Sbjct: 100 AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159
Query: 947 HYYYYY---NSAKSGH-ETVLRLLKQYADD 972
Y+ +A++GH + RL + +
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTE 189
Score = 44.9 bits (106), Expect = 8e-05
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRN--AFRVAA-KSGH-ETVLRLLKQYADDSEY 944
+AA+ GH + L + N AFR AA GH + LL +
Sbjct: 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-- 226
Query: 945 FVHYYYYYNSAKSGHETVLRLLKQYADDI 973
Y + + G + V + ++ + +
Sbjct: 227 ----YAEIHEFEYGEKYVNPFIARHVNRL 251
Score = 34.9 bits (80), Expect = 0.12
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 887 ISIAAQEGHE---DCVRLLLH-----YGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+ + E D +R LL A R+A + G++ LL
Sbjct: 282 LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 341
Query: 939 ADDSEYFVHYYYYYNSAKSGHETVLRLL 966
YY N G + +
Sbjct: 342 PSVLALTKANNYYINE-TGGRLDLRAVA 368
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 173 bits (441), Expect = 3e-49
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 35/238 (14%)
Query: 378 GQTALNVAAHQGFVDAVQ-ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
++ L +AA + V A+ +L G ++ G T L A+ + +L+++ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 437 V-----NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD-------- 483
+ G+TAL A ++ +V+ LLA GA V+A
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVN---------LVRALLARGASVSARATGSVFHYR 113
Query: 484 -----SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
G L +A +G +IV ++E+ ADI QD+ G T L + L P+ +
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ-PNKTFACQ 172
Query: 539 VVSILLEKGAKVD------HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSG 590
+ ++LL + +G+TP +A EG+ + + L++
Sbjct: 173 MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 161 bits (410), Expect = 3e-45
Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 43/242 (17%)
Query: 344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN 403
+S L EN++ L LK ++ G+TAL++AA ++A +L+EA
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGC-EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 404 I-----NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-------------MGGR 445
+ EG T L A + +V+ LL GA V+ G
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
L AA G E +V+LL+ GA + A DS G T L + +
Sbjct: 123 HPLSFAACVGSEE---------IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQM 173
Query: 506 LE----YDADIN------QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR 555
YD + +N G T ++ +G + L++K +
Sbjct: 174 YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG-----VEGNIVMFQHLMQKRKHIAAAHH 228
Query: 556 EG 557
Sbjct: 229 HH 230
Score = 158 bits (402), Expect = 5e-44
Identities = 55/267 (20%), Positives = 94/267 (35%), Gaps = 42/267 (15%)
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
M + L AA ++ + KLL G V+ + G TAL +A + +
Sbjct: 1 MIWESPLLLAAKENDVQA--------LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEA 52
Query: 502 VSSILEYDADI-----NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
++E ++ + +G+TAL ++ + +V LL +GA V
Sbjct: 53 AMVLMEAAPELVFEPMTSELYEGQTALHIAVIN-----QNVNLVRALLARGASVSARATG 107
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
+ + G PL AA +G V LL+ GA +
Sbjct: 108 SVFHYRPHNLIYY--------------------GEHPLSFAACVGSEEIVRLLIEHGADI 147
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
D+ G TVL + Q N Q+ + L G E +N G TP
Sbjct: 148 RAQDSLGNTVLHILILQPNKTFACQMYN----LLLSYDGGDHLKSLELVPNNQGLTPFKL 203
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDG 703
A +EG+ + + L++ + +
Sbjct: 204 AGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 146 bits (371), Expect = 7e-40
Identities = 49/268 (18%), Positives = 89/268 (33%), Gaps = 56/268 (20%)
Query: 486 GRTALIASAYMGHADIVSSIL-EYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
+ L+ +A +S +L +++Q+ G TAL ++AL + +L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-----DNLEAAMVLM 57
Query: 545 EKGAKVDH-----EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
E ++ E EG T L +A + ++ LL A
Sbjct: 58 EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG 659
+ + G LS AA G+ ++V L++ G A
Sbjct: 118 IYY--------------------GEHPLSFAACVGSEEIVRLLIEHG------A------ 145
Query: 660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRA----LLEAGAKVD------QVDNDGRAPLIL 709
+ Q D+ G T LH ++ ++ LL +N G P L
Sbjct: 146 DIRAQ--DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203
Query: 710 AAQDGHYHLVEMFLEQYEANVNQKSHDG 737
A +G+ + + L Q ++ H
Sbjct: 204 AGVEGNIVMFQ-HLMQKRKHIAAAHHHH 230
Score = 136 bits (346), Expect = 2e-36
Identities = 46/205 (22%), Positives = 72/205 (35%), Gaps = 26/205 (12%)
Query: 557 GMTPLLVAAFEGHRD-VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
+PLL+AA E + ++L + G T L AA + +L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 616 VDTI-----DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA-----GGRQTGSLDEQH 665
+ EG+T L +A N+++V LL RG A +
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG------ASVSARATGSVFHYRPHN 116
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE- 724
G PL +AA G EE+ R L+E GA + D+ G L + +
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176
Query: 725 --QYEANVNQKS------HDGRTAL 741
Y+ + KS + G T
Sbjct: 177 LLSYDGGDHLKSLELVPNNQGLTPF 201
Score = 132 bits (335), Expect = 4e-35
Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 27/202 (13%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLK---SCEALDLELVDKHGQTALNVAAHQGFVDAVQI 396
+ ++ LH +N+ ++ + GQTAL++A V+ V+
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93
Query: 397 LLEAGANINHTD-------------CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG 443
LL GA+++ G PL A+ G +V+LL++ GAD+ D
Sbjct: 94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL 153
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA------ADSEGRTALIASAYMG 497
G T L + + LLL+ + +++G T + G
Sbjct: 154 GNTVLHILILQPNKTFACQM-----YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208
Query: 498 HADIVSSILEYDADINQQDNDG 519
+ + +++ I +
Sbjct: 209 NIVMFQHLMQKRKHIAAAHHHH 230
Score = 42.6 bits (101), Expect = 2e-04
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLK 936
AA G E+ VRLL+ +GAD + D G + + ++
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175
Score = 42.6 bits (101), Expect = 3e-04
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCV-RLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA+E + +LL G + G A +AA + E + L++ +
Sbjct: 9 LAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Score = 37.2 bits (87), Expect = 0.014
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHS-----DHCGRNAFRVAAKSGHETVLRLL 935
IAA + + +L+ + + G+ A +A + + ++R L
Sbjct: 43 IAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94
Score = 36.4 bits (85), Expect = 0.030
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 889 IAAQEGHEDCVRLLLHYGAD-------------PKHSDHCGRNAFRVAAKSGHETVLRLL 935
IA + + VR LL GA P + + G + AA G E ++RLL
Sbjct: 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140
Score = 31.4 bits (72), Expect = 1.0
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRN 918
+A EG+ + L+ + H +
Sbjct: 203 LAGVEGNIVMFQHLMQKRKHIAAAHHHHHH 232
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 168 bits (428), Expect = 2e-48
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+ + L AA +G ++ + LL+ N+N + G T L+ G+ + + LL
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR 59
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GA+ + D G + AA G L+ ++ LL A VN D+EG L +
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLD---------TLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 494 AYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
A GH +V ++++ A ++ +++ G TA ++ L G +VVS++ GA
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL-----YGRNEVVSLMQANGA 161
Score = 164 bits (417), Expect = 6e-47
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
L SA+ G + LLQ+ +VN + GRTAL+ G + E+
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEI---------A 53
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
+ LL GA+ + D G + +A G D + ++LE+ AD+N +DN+G L ++A
Sbjct: 54 RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-- 111
Query: 530 VPSSDGYAKVVSILLEKGAK-VDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581
+G+ +VV L++ A V H + +G T +A G +V ++ N A
Sbjct: 112 ---KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 144 bits (367), Expect = 3e-40
Identities = 54/210 (25%), Positives = 79/210 (37%), Gaps = 52/210 (24%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
L ++A G + ++S+L+ + ++N Q+ GRTAL V L G ++ LL
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL------GNPEIARRLL 57
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
+GA D +DR G + AA G D + LLE +AD + D G PL AA GH
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
V L+ A N+
Sbjct: 118 VVEFLVKHTA-------------------SNVG--------------------------- 131
Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
HR++ G T A + G EV + GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 140 bits (356), Expect = 9e-39
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
+ + L +AA+ G + LL V+ + GRT L GN ++ +LL R
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLR 59
Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA 705
G + +D G+ +H AA G + + LLE A V+ DN+G
Sbjct: 60 G--------------ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV----NMKNVTKL 751
PL LAA++GH +VE ++ +NV ++H G TA + V L
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Score = 139 bits (354), Expect = 2e-38
Identities = 48/171 (28%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
L AA G + LL+N + + + GRT L +G+ LL GA
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
D D G V+ AA G +D + LL+ A D DN G PLH
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ------A--------DVNIEDNEGNLPLH 108
Query: 676 YAAIEGHEEVCRALLEAGAK-VDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
AA EGH V L++ A V ++ G LA G +V +
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 137 bits (349), Expect = 8e-38
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 13/165 (7%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
L A ++ L L ++ + G+TAL V G + + LL GAN +
Sbjct: 9 LASAAARGDLEQLT-SLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D G+ + A+ G ++ LL+ ADVN D G L AA GHL
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR-------- 117
Query: 467 CVVKLLLAAGAH-VNAADSEGRTALIASAYMGHADIVSSILEYDA 510
VV+ L+ A V + +G TA + G ++VS + A
Sbjct: 118 -VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 45.8 bits (110), Expect = 1e-05
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
+ G+ + R LL GA+P D G AA++G +T+ LL+ AD D+E
Sbjct: 43 QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE 102
Query: 944 YF--VHYYYYYNSAKSGH-ETVLRLLKQYADDI 973
+H +AK GH V L+K A ++
Sbjct: 103 GNLPLHL-----AAKEGHLRVVEFLVKHTASNV 130
Score = 44.7 bits (107), Expect = 2e-05
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGA-DPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA+EGH V L+ + A + H +H G A +A G V+ L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 43.1 bits (103), Expect = 9e-05
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
AA G + + LL + + GR A +V E RLL + A+
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 62
Score = 28.9 bits (66), Expect = 5.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 889 IAAQEGHEDCVRLLLHYGA 907
+A G + V L+ GA
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 171 bits (434), Expect = 6e-48
Identities = 57/282 (20%), Positives = 92/282 (32%), Gaps = 47/282 (16%)
Query: 474 AAGAHVNAADSEGRTALIASAYMGHADIVSSILEY-------DADINQQDND-GRTALSV 525
+ A R ++ + + + S+L + D +D + G+T L
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDH-----------EDREGMTPLLVAAFEGHRDVCE 574
+ L + +G +++LL+ K D +G T L +A + +
Sbjct: 61 AMLNL--HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118
Query: 575 ILLENEADQDHIDKS--------------GRTPLWAAASMGHASCVALLL---FWGAYVD 617
+L+EN AD G PL AA + V LL + A +
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178
Query: 618 TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQ--TGSLDEQHRDNCGWTPLH 675
D+ G TVL + V N M L G + E+ + G TPL
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238
Query: 676 YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
AA G V +L+ AA H+H
Sbjct: 239 LAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHHH 273
Score = 159 bits (405), Expect = 6e-44
Identities = 60/301 (19%), Positives = 98/301 (32%), Gaps = 75/301 (24%)
Query: 339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVD------KHGQTALNVA---AHQG 389
++ + A++N L++ L + L D + G+T L A H G
Sbjct: 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68
Query: 390 FVDAVQILLEAGANINHT-----------DCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
D + +LL+ + +G T L A + +V LL+++GADV
Sbjct: 69 QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128
Query: 439 CSDMG--------------GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG---AHVNA 481
+ G G L AA L +VK LL A ++A
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA---------IVKFLLQNSWQPADISA 179
Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
DS G T L A + + ++ + + +
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTS----------------------MYNEILILGA 217
Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
L + +R+G+TPL +AA G V +L+ E AAA
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270
Query: 602 H 602
H
Sbjct: 271 H 271
Score = 126 bits (317), Expect = 3e-32
Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 40/235 (17%)
Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLE-------NEADQDHID-KSGRTPLWAA- 597
A + A + + E LL D + D ++G+T L A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 598 --ASMGHASCVALLLFWGAYVDTI-----------DAEGRTVLSVAAAQGNIDVVNQLLD 644
G +ALLL D++ +G+T L +A + N+ +V L++
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG---AKVDQVDN 701
G + A G + G PL AA + + LL+ A + D+
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182
Query: 702 DGRAPLILAAQDGHYHLVEM---------------FLEQYEANVNQKSHDGRTAL 741
G L + + L + G T L
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237
Score = 52.1 bits (125), Expect = 3e-07
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKS--------------CEALDLELVDKHGQTA 381
I+ DS +VLH L + + T + E+ ++ G T
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH 423
L +AA G + + +L+ + +A+ H
Sbjct: 237 LALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHH 271
Score = 41.7 bits (98), Expect = 7e-04
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 888 SIAAQEGHEDCVRLLLHYG---ADPKHSDHCGRNAFRVAAKSGHETV 931
S+AA V+ LL AD D G + TV
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV 199
Score = 40.9 bits (96), Expect = 0.001
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 14/61 (22%)
Query: 889 IAAQEGHEDCVRLLLHYGAD--------------PKHSDHCGRNAFRVAAKSGHETVLRL 934
IA + + V LL+ GAD + + G +AA + +++
Sbjct: 107 IAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166
Query: 935 L 935
L
Sbjct: 167 L 167
Score = 39.8 bits (93), Expect = 0.003
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 27/106 (25%)
Query: 888 SIAAQEGHEDCVRLLLHYGAD-----------PKHSDHCGRNAFRVAAKSGH-ETVLRLL 935
+ G D + LLL S + G+ A +A + + V L+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 936 KQYAD----DSEYFVHYYYYYNS-----------AKSGHETVLRLL 966
+ AD + F A + +++ L
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167
Score = 34.8 bits (80), Expect = 0.11
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 7/41 (17%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHE 929
+AA G + +L AA H
Sbjct: 239 LAASSGKIGVLAYILQREIH-------EPECRHAAAHHHHH 272
Score = 33.6 bits (77), Expect = 0.26
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 873 HMRIILGSSKVGE-KISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETV 931
H + + + V K + L + ++ G +AA SG V
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248
Query: 932 LRLL 935
L +
Sbjct: 249 LAYI 252
Score = 32.8 bits (75), Expect = 0.39
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 692 AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ------YEANVNQKSHD-GRTAL 741
A R + A + +E L + K + G+T L
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCL 58
Score = 29.4 bits (66), Expect = 5.5
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 890 AAQEGHEDCVRLLLHY-------GADPKHSD-HCGRNAFRVA---AKSGH-ETVLRLLKQ 937
A + + + LL + D + D G+ A +G +T+ LL
Sbjct: 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79
Query: 938 YADDSEYFVHYYYYYNSAKSGHETVL 963
Y + +T L
Sbjct: 80 ARKTDSLKQFVNASYTDSYYKGQTAL 105
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 166 bits (422), Expect = 1e-47
Identities = 54/176 (30%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432
+ L AA G V+ V+ L N + TPL A+ +VV+ LLQ
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
GADV+ D GG L A GH EV +LL+ GA VN AD T L
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEV---------AELLVKHGAVVNVADLWKFTPLHE 114
Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
+A G +I +L++ AD +++ DG T L + DG + +L A
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK------DGDTDIQDLLRGDAA 164
Score = 140 bits (355), Expect = 1e-38
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+S+ L + ++ +K L + ++++ ++ T L+ AA V V+ LL+
Sbjct: 5 NSEADRQLLEAAKAGDVETVK-KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA+++ D G PL +A GH V +LL++ GA VN +D+ T L AA G E
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE- 122
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
+ KLLL GA + +G T L G DI
Sbjct: 123 --------ICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQ 156
Score = 130 bits (331), Expect = 2e-35
Identities = 51/186 (27%), Positives = 68/186 (36%), Gaps = 24/186 (12%)
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEG 568
A N ++ L +A G + V L + TPL AA
Sbjct: 2 AMGN---SEADRQLLEAA-----KAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN 53
Query: 569 HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
V E LL++ AD DK G PL A S GH LL+ GA V+ D T L
Sbjct: 54 RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
AAA+G ++ LL G A D ++ G TPL +G ++
Sbjct: 114 EAAAKGKYEICKLLLQHG------A--------DPTKKNRDGNTPLDLVK-DGDTDIQDL 158
Query: 689 LLEAGA 694
L A
Sbjct: 159 LRGDAA 164
Score = 122 bits (310), Expect = 2e-32
Identities = 50/196 (25%), Positives = 68/196 (34%), Gaps = 52/196 (26%)
Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASC 605
GA + E LL AA G + + L + + I+ TPL AA S
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
V LL GA ++
Sbjct: 58 VEYLLQHGA--------------------DVHA--------------------------- 70
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
+D G PLH A GH EV L++ GA V+ D PL AA G Y + + L Q
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK-LLLQ 129
Query: 726 YEANVNQKSHDGRTAL 741
+ A+ +K+ DG T L
Sbjct: 130 HGADPTKKNRDGNTPL 145
Score = 42.4 bits (101), Expect = 2e-04
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA V LL +GAD D G A GH E L+K A
Sbjct: 48 FAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Score = 41.2 bits (98), Expect = 4e-04
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
AA +G + +LLL +GADP + G + G + LL+
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162
Score = 40.8 bits (97), Expect = 5e-04
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
A GH + LL+ +GA +D AA G E LL+ AD
Sbjct: 81 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Score = 37.4 bits (88), Expect = 0.007
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA+ G + V+ L + + + AA V LL+ AD
Sbjct: 14 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 159 bits (406), Expect = 8e-46
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 11/143 (7%)
Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
+ ++ L AA +G V+ V+ LLEAGA+ N + G P++ G + V +L
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL 62
Query: 430 LLQSGADVNCSDMGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
LL GA+ NC+D T + AA G L+ + +L AGA ++ D+ GR
Sbjct: 63 LLLHGAEPNCADPATLTRPVHDAAREGFLD---------TLVVLHRAGARLDVCDAWGRL 113
Query: 489 ALIASAYMGHADIVSSILEYDAD 511
+ + GH DI + D
Sbjct: 114 PVDLAEEQGHRDIARYLHAATGD 136
Score = 159 bits (405), Expect = 1e-45
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 16/150 (10%)
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
I+ L +A+ G V+ LL++GAD N + GR ++ G +
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQ- 58
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRT-ALIASAYMGHADIVSSILEYDADINQQDND 518
V +LLL GA N AD T + +A G D + + A ++ D
Sbjct: 59 --------VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW 110
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGA 548
GR + ++ G+ + L
Sbjct: 111 GRLPVDLAE-----EQGHRDIARYLHAATG 135
Score = 142 bits (360), Expect = 1e-39
Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCV 606
+ L AA G + LLE AD + +++ GR P+ MG A
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 607 ALLLFWGAYVDTIDAEGRTV-LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
LLL GA + D T + AA +G +D + L G A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG------A--------RLDV 106
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
D G P+ A +GH ++ R L A
Sbjct: 107 CDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 117 bits (296), Expect = 5e-31
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 17/130 (13%)
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
+ + L+ AAA+G ++ V QLL+ G A D + G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAG------A--------DPNALNRFGRR 47
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR-APLILAAQDGHYHLVEMFLEQYEANVN 731
P+ G +V LL GA+ + D P+ AA++G + + A ++
Sbjct: 48 PIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLD 105
Query: 732 QKSHDGRTAL 741
GR +
Sbjct: 106 VCDAWGRLPV 115
Score = 61.7 bits (151), Expect = 2e-11
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 692 AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+ + A L AA G V LE A+ N + GR +
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPI 49
Score = 54.4 bits (132), Expect = 7e-09
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA+EG D + +L GA D GR +A + GH + L D
Sbjct: 84 DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 53.2 bits (129), Expect = 2e-08
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD----DSEY 944
AA G + VR LL GADP + GR +V + LL A+ D
Sbjct: 18 TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPAT 77
Query: 945 F---VHYYYYYNSAKSGH-ETVLRLLKQYAD 971
VH +A+ G +T++ L + A
Sbjct: 78 LTRPVHD-----AAREGFLDTLVVLHRAGAR 103
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 159 bits (405), Expect = 2e-45
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 15/166 (9%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
L AA G D V+IL+ GA TD G +PL A+ GH + ++LL++G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
+ RT L AA GH + V++LL GA VNA D TAL +
Sbjct: 61 DARTKVDRTPLHMAASEGHANI---------VEVLLKHGADVNAKDMLKMTALHWATEHN 111
Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSIL 543
H ++V +++Y AD++ Q +TA +S +G + IL
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISI-----DNGNEDLAEIL 152
Score = 153 bits (390), Expect = 2e-43
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
+ L A+ G V++L+ +GA +D G + L AA GH
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFS---------TT 50
Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
++LL AG +A RT L +A GHA+IV +L++ AD+N +D TAL +
Sbjct: 51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
+ +VV +L++ GA V + + T ++ G+ D+ EIL
Sbjct: 111 -----NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 139 bits (353), Expect = 2e-38
Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
D G + L++AA G ++LL AG + + TPL A+ GH+ +V++LL+ G
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
ADVN DM TAL A H E VV+LL+ GA V+ +TA S
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQE---------VVELLIKYGADVHTQSKFCKTAFDISI 141
Query: 495 YMGHADIV 502
G+ D+
Sbjct: 142 DNGNEDLA 149
Score = 139 bits (353), Expect = 2e-38
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHI--DKSGRTPLWAAASMGHASCVALLLFWG 613
+ LL AA G D IL+ N A D G +PL AA GH S +LL G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
D RT L +AA++G+ ++V LL G ++ + D T
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHG------------ADVNAK--DMLKMTA 103
Query: 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
LH+A H+EV L++ GA V + ++ +G+ L E+
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 129 bits (326), Expect = 9e-35
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 6/158 (3%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
+ L+ +A G D V ++ A D G + L ++A G+ +LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQY-----GHFSTTEVLL 54
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
G D + TPL +AA EGH ++ E+LL++ AD + D T L A H
Sbjct: 55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114
Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
V LL+ +GA V T +T ++ GN D+ L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 104 bits (261), Expect = 4e-26
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
D S LH + + + L + K +T L++AA +G + V++LL+
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTE-VLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
GA++N D T L A+ H VV+LL++ GADV+ +TA + G+ ++
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 460 TIVL 463
+L
Sbjct: 149 AEIL 152
Score = 102 bits (256), Expect = 2e-25
Identities = 39/120 (32%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
+ L AA G D V L+ G D G +PLH AA G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF---------------TTDWLGTSPLHLAAQYG 45
Query: 682 HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
H LL AG D R PL +AA +GH ++VE+ L+ + A+VN K TAL
Sbjct: 46 HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTAL 104
Score = 48.2 bits (116), Expect = 1e-06
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936
A + H++ V LL+ YGAD + AF ++ +G+E + +L+
Sbjct: 106 WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 43.5 bits (104), Expect = 5e-05
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AAQ GH +LL G R +AA GH V LLK AD
Sbjct: 40 LAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Score = 43.1 bits (103), Expect = 8e-05
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA EGH + V +LL +GAD D A A + H E V L+K AD
Sbjct: 73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 38.1 bits (90), Expect = 0.003
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL----RVNMKNVTKL 751
D L+ AA+ G V + + A G + L + + T++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEV 52
Score = 36.6 bits (86), Expect = 0.012
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA+ G +D VR+L+ GA +D G + +AA+ GH T LL+
Sbjct: 8 EAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 152 bits (387), Expect = 2e-43
Identities = 68/134 (50%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
+G+T L++AA G ++ V++LLEAGA++N D G TPL A+ GH VVKLLL++GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
VN D GRT L AA GHLE VVKLLL AGA VNA D GRT L +A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 497 GHADIVSSILEYDA 510
GH ++V +LE A
Sbjct: 112 GHLEVVKLLLEAGA 125
Score = 147 bits (374), Expect = 1e-41
Identities = 69/138 (50%), Positives = 85/138 (61%), Gaps = 14/138 (10%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
G TPL A+ GH VVKLLL++GADVN D GRT L AA GHLEV VK
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV---------VK 52
Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
LLL AGA VNA D GRT L +A GH ++V +LE AD+N +D +GRT L ++A
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA--- 109
Query: 531 PSSDGYAKVVSILLEKGA 548
+G+ +VV +LLE GA
Sbjct: 110 --RNGHLEVVKLLLEAGA 125
Score = 134 bits (340), Expect = 4e-37
Identities = 61/130 (46%), Positives = 83/130 (63%), Gaps = 5/130 (3%)
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
GRT L +A GH ++V +LE AD+N +D +GRT L ++A +G+ +VV +LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLE 56
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
GA V+ +D+ G TPL +AA GH +V ++LLE AD + DK+GRTPL AA GH
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 606 VALLLFWGAY 615
V LLL GAY
Sbjct: 117 VKLLLEAGAY 126
Score = 132 bits (336), Expect = 2e-36
Identities = 64/138 (46%), Positives = 78/138 (56%), Gaps = 14/138 (10%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
G TPL +AA GH +V ++LLE AD + DK+GRTPL AA GH V LLL GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ D GRT L +AA G+++VV LL+ G D +D G TPLH
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--------------DVNAKDKNGRTPLHL 107
Query: 677 AAIEGHEEVCRALLEAGA 694
AA GH EV + LLEAGA
Sbjct: 108 AARNGHLEVVKLLLEAGA 125
Score = 125 bits (318), Expect = 4e-34
Identities = 61/132 (46%), Positives = 80/132 (60%), Gaps = 11/132 (8%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH ++ ++K L A D+ DK+G+T L++AA G ++ V++LLEAGA++N
Sbjct: 6 LHLAARNGHLEVVK-LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D G TPL A+ GH VVKLLL++GADVN D GRT L AA GHLE
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE-------- 115
Query: 467 CVVKLLLAAGAH 478
VVKLLL AGA+
Sbjct: 116 -VVKLLLEAGAY 126
Score = 112 bits (284), Expect = 2e-29
Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 15/119 (12%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
GRT L +AA G+++VV LL+ G A D +D G TPLH AA GH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG------A--------DVNAKDKNGRTPLHLAARNGH 47
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
EV + LLEAGA V+ D +GR PL LAA++GH +V++ LE A+VN K +GRT L
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPL 105
Score = 51.6 bits (125), Expect = 4e-08
Identities = 28/86 (32%), Positives = 31/86 (36%), Gaps = 38/86 (44%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G TPLH AA GH EV + LLEAGA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA----------------------------------D 27
Query: 730 VNQKSHDGRTAL----RVNMKNVTKL 751
VN K +GRT L R V KL
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKL 53
Score = 48.1 bits (116), Expect = 7e-07
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA+ GH + V+LLL GAD D GR +AA++GH V++LL
Sbjct: 74 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 47.3 bits (114), Expect = 2e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA+ GH + V+LLL GAD D GR +AA++GH V++LL
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 46.6 bits (112), Expect = 3e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA+ GH + V+LLL GAD D GR +AA++GH V++LL
Sbjct: 41 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 31.5 bits (73), Expect = 0.38
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 889 IAAQEGHEDCVRLLLHYGA 907
+AA+ GH + V+LLL GA
Sbjct: 107 LAARNGHLEVVKLLLEAGA 125
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 152 bits (387), Expect = 3e-43
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
G + T+ G T L AS G V+ LLQ+G+D N D G T L A GHL+V
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKV- 58
Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
V+LLL A VN + + L +A GH DIV +L Y A N + G
Sbjct: 59 --------VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL 110
Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGA 548
+ + + ++ + + +
Sbjct: 111 RPVDYTD-----DESMKSLLLLPEKNES 133
Score = 149 bits (379), Expect = 4e-42
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
+ G+T L++A+ +G + +V+ LL+ G++ N D GWTPL A GH VV+LLLQ
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
A VN + + L AA GH++ +VKLLL+ GA NA + G + +
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVD---------IVKLLLSYGASRNAVNIFGLRPVDYTD 117
Query: 495 YMGHADIVSSILEYDADIN 513
++ + E + +
Sbjct: 118 DESMKSLL-LLPEKNESSS 135
Score = 123 bits (312), Expect = 4e-33
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
D ++ G T L +++ G V LL+ G+ + +D G TPL A GH
Sbjct: 2 IDPFT-NHRGETLLHIAS-----IKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH 55
Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSV 629
V E+LL+++A + +PL AA GH V LLL +GA + ++ G +
Sbjct: 56 LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Query: 630 AAAQGNIDVVNQLLDRG 646
+ ++ L ++
Sbjct: 116 TDDESMKSLL-LLPEKN 131
Score = 120 bits (305), Expect = 3e-32
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 14/141 (9%)
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
+ G T L +A+ +G E LL+N +D + D +G TPL A + GH V LLL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
A V+T + + L AA G++D+V LL G A + G P
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG------A--------SRNAVNIFGLRP 112
Query: 674 LHYAAIEGHEEVCRALLEAGA 694
+ Y E + + + +
Sbjct: 113 VDYTDDESMKSLLLLPEKNES 133
Score = 118 bits (299), Expect = 2e-31
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
+ + +++LH + +I ++ +L + D + D G T L+ A + G + V++LL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVE-YLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
A +N T + +PL A+ GH +VKLLL GA N ++ G +
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS- 123
Query: 460 TIVLGPLCVVKLLLAAGAHVNAA 482
++ L + +A+
Sbjct: 124 --------LLLLPEKNES-SSAS 137
Score = 117 bits (296), Expect = 5e-31
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
G T + G T+L +A+ +G+I V LL G + D +D+ GWT
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNG------S--------DPNVKDHAGWT 45
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
PLH A GH +V LL+ A V+ +PL AA++GH +V++ L A+ N
Sbjct: 46 PLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNA 104
Query: 733 KSHDGRTALRV----NMKNVTKL 751
+ G + +MK++ L
Sbjct: 105 VNIFGLRPVDYTDDESMKSLLLL 127
Score = 54.0 bits (131), Expect = 1e-08
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS 942
AA+ GH D V+LLL YGA + G +++L L ++ S
Sbjct: 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135
Score = 48.2 bits (116), Expect = 9e-07
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
IA+ +G V LL G+DP DH G A GH + V LL+ A
Sbjct: 16 IASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Score = 28.5 bits (65), Expect = 4.8
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 906 GADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
G DP ++H G +A+ G +V LL+ +D
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSD 35
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 151 bits (385), Expect = 4e-43
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+ A G +D V+ + G ++N T G PL A+ G +++ LL
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
GAD+N D T L +A + GH+ VKLLL+ GA +G TA A+
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVS---------CVKLLLSKGADKTVKGPDGLTAFEAT 113
Query: 494 AYMGHADIV 502
++
Sbjct: 114 DNQAIKALL 122
Score = 138 bits (351), Expect = 2e-38
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 14/130 (10%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
A G VK + G DVN + GGR L AA G LE+ ++
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI---------LE 57
Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
LL GA +NA D T L+++ Y GH V +L AD + DG TA +
Sbjct: 58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT---- 113
Query: 531 PSSDGYAKVV 540
+ ++
Sbjct: 114 -DNQAIKALL 122
Score = 129 bits (327), Expect = 3e-35
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
S + + G D V + D+N+ GR L +A C G +++
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-----GQLEIL 56
Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM 600
LL KGA ++ D+ +TPLL A +EGH ++LL AD+ G T A +
Sbjct: 57 EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Query: 601 GHASCV 606
+ +
Sbjct: 117 AIKALL 122
Score = 124 bits (313), Expect = 2e-33
Identities = 30/164 (18%), Positives = 41/164 (25%), Gaps = 47/164 (28%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
+ A G D + + D + + GR PL AA G + LL GA +
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ D TPL
Sbjct: 67 NA-----------------------------------------------PDKHHITPLLS 79
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVE 720
A EGH + LL GA DG L++
Sbjct: 80 AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 116 bits (293), Expect = 1e-30
Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
+ + +G V + KG V+ G PL AA G ++ E
Sbjct: 4 GSMCDKEFMWAL-----KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF 58
Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
LL AD + DK TPL +A GH SCV LLL GA +G T Q
Sbjct: 59 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118
Query: 636 IDVV 639
++
Sbjct: 119 KALL 122
Score = 114 bits (289), Expect = 3e-30
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 15/123 (12%)
Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
+ + A G++D V + +G D G PLHYAA
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKG------E--------DVNRTLEGGRKPLHYAA 48
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGR 738
G E+ LL GA ++ D PL+ A +GH V++ L + A+ K DG
Sbjct: 49 DCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGL 107
Query: 739 TAL 741
TA
Sbjct: 108 TAF 110
Score = 113 bits (285), Expect = 1e-29
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
+++ +K + D+ + G+ L+ AA G ++ ++ LL GA+IN
Sbjct: 11 FMWALKNGDLDEVK-DYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
D TPL SA + GH + VKLLL GAD G TA A +
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 72.4 bits (179), Expect = 3e-15
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH + +L+ FL A D+ DKH T L A ++G V V++LL GA+
Sbjct: 44 LHYAADCGQLEILE-FLLLKGA-DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Query: 407 TDCEGWTPLRSASWGGHSAVVK 428
+G T + A+++
Sbjct: 102 KGPDGLTAFEATDNQAIKALLQ 123
Score = 49.7 bits (120), Expect = 2e-07
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR 933
A EGH CV+LLL GAD G AF + +L+
Sbjct: 79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 47.4 bits (114), Expect = 1e-06
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
A + G D V+ + G D + GR AA G +L L
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59
Score = 46.2 bits (111), Expect = 3e-06
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
AA G + + LL GAD D A GH + ++LL
Sbjct: 46 YAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 154 bits (390), Expect = 5e-43
Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 18/189 (9%)
Query: 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE---GWTPLRSASWGGHSAVVKLLLQ 432
++ AA G + L E G + + + LR+ + + L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
GAD+ G T GG ++T G + K+ L GA + A + +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDIT---GTTELCKIFLEKGADITALYKPYKIVVFK 120
Query: 493 SAYMGHADIVSS-------ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
+ + D + + +D G TAL C + ++ +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC-----QKPIALKMMED 175
Query: 546 KGAKVDHED 554
K + ++
Sbjct: 176 YIKKYNLKE 184
Score = 147 bits (373), Expect = 9e-41
Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 48/224 (21%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
+ A+A +G + + E + ++ ++ + L + + K+ L+
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLI 62
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDV------CEILLENEADQDHIDKSGRTPLWAAA 598
KGA + +EG T G D+ C+I LE AD + K + ++
Sbjct: 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122
Query: 599 SMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQT 658
++ + Q + +
Sbjct: 123 FNYFVDENEMIPLYKLIFS---------------QSGLQL-------------------- 147
Query: 659 GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
+D G T L + + + + K + +N
Sbjct: 148 -----LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 140 bits (354), Expect = 3e-38
Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 11/184 (5%)
Query: 343 NQSVLHKLCAENNINLLKTFLKS-CEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
+ + E + L L + L+ G
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 402 ANINHTDCEGWTPLRSASWGGHSAV------VKLLLQSGADVNCSDMGGRTALRAAAWGG 455
A+I EG T GG + + K+ L+ GAD+ + + +
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125
Query: 456 HLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQ 514
++ + + KL+ + +G + D G TAL + + +Y N
Sbjct: 126 FVDEN---EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Query: 515 QDND 518
++N
Sbjct: 183 KENS 186
Score = 126 bits (318), Expect = 2e-33
Identities = 26/199 (13%), Positives = 48/199 (24%), Gaps = 33/199 (16%)
Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA----ASMGHASCVALLL 610
+ AA G + L E + D L+ L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLI 62
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQ------LLDRGMILGCLAGGRQTGSLDEQ 664
GA + + EG T+ G D+ L++G D
Sbjct: 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA--------------DIT 108
Query: 665 HRDNCGWTPLHYAAIEGHEEVCRA-------LLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
+ + ++G ++ D G L +
Sbjct: 109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168
Query: 718 LVEMFLEQYEANVNQKSHD 736
++ +E Y N K +
Sbjct: 169 ALK-MMEDYIKKYNLKENS 186
Score = 117 bits (295), Expect = 3e-30
Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 29/169 (17%)
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTI---DAEGRTVLSVAAAQGNIDVVNQLLD 644
S + AAA +G L G VL + + L++
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE------EVCRALLEAGAKVDQ 698
+G D + R G T G E+C+ LE GA +
Sbjct: 64 KGA--------------DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109
Query: 699 VDNDGRAPLILAAQDGHY------HLVEMFLEQYEANVNQKSHDGRTAL 741
+ + + + L ++ Q + K G TAL
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158
Score = 86.7 bits (215), Expect = 1e-19
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEAL-----DLELVDKHGQTALNVAAHQGFVDAV 394
+ ++ L ++ T + C+ D+ + K + + FVD
Sbjct: 72 TKEGTTLFFPLFQGGGNDITGT-TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN 130
Query: 395 Q-------ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
+ I ++G + D G T L +K++ N +
Sbjct: 131 EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 43.5 bits (103), Expect = 7e-05
Identities = 9/49 (18%), Positives = 14/49 (28%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+ E L++ GAD K G F + G +
Sbjct: 46 LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94
Score = 42.7 bits (101), Expect = 2e-04
Identities = 7/60 (11%), Positives = 13/60 (21%), Gaps = 8/60 (13%)
Query: 889 IAAQEGHEDCVR-------LLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-AD 940
D + G D G A + L++++ Y
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179
Score = 40.4 bits (95), Expect = 9e-04
Identities = 11/105 (10%), Positives = 24/105 (22%), Gaps = 25/105 (23%)
Query: 889 IAAQEGHED------CVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY---- 938
Q G D ++ L GAD + + ++ Y
Sbjct: 81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140
Query: 939 ----AD----DSEYF--VHYYYYYNSAKSGHETVLRLLKQYADDI 973
D + + + L++++ Y
Sbjct: 141 SQSGLQLLIKDKWGLTALEF-----VKRCQKPIALKMMEDYIKKY 180
Score = 35.8 bits (83), Expect = 0.030
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDH---CGRNAFRVAAKSGHETVLRLL 935
+S AA G + L G + K S + R + L
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61
Score = 33.9 bits (78), Expect = 0.15
Identities = 1/25 (4%), Positives = 7/25 (28%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD 913
+ ++++ Y +
Sbjct: 160 FVKRCQKPIALKMMEDYIKKYNLKE 184
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 153 bits (389), Expect = 4e-42
Identities = 56/276 (20%), Positives = 89/276 (32%), Gaps = 67/276 (24%)
Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELV------DKHGQTALNVAA---HQGFVDA 393
++ L + + L L+ L G+T L A G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 394 VQILLEAG-----------ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDM 442
+ LL+ A +G + L A VKLL+++GADV+
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 443 G-------------GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG---AHVNAADSEG 486
G G L AA + VV LL A + A DS G
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWD---------VVTYLLENPHQPASLEATDSLG 172
Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546
T L HA + ++ +AL + DG ++ + L
Sbjct: 173 NTVL-------HA----------LVMIADNSPENSALVIHMY-----DGLLQMGARLCPT 210
Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
+ + +G+TPL +AA EG ++ +L+ E
Sbjct: 211 VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 153 bits (389), Expect = 4e-42
Identities = 51/285 (17%), Positives = 89/285 (31%), Gaps = 69/285 (24%)
Query: 486 GRTALIASAYMGHADIVSSILEY--------DADINQQDNDGRTALSVSALCVPSSDGYA 537
R L + G + ++ +LEY + + G+T L + L DG
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLN--LQDGVN 59
Query: 538 KVVSILLEKGAKVDH-----------EDREGMTPLLVAAFEGHRDVCEILLENEAD---- 582
+ LL+ + E +G + L +A + ++L+EN AD
Sbjct: 60 ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR 119
Query: 583 ---------QDHIDKSGRTPLWAAASMGHASCVALLL---FWGAYVDTIDAEGRTVLSVA 630
Q G PL AA V LL A ++ D+ G TVL
Sbjct: 120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179
Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
+ ++ + L +G ++ L
Sbjct: 180 VMIAD-------------------------------NSPENSALVIHMYDGLLQMGARLC 208
Query: 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
+ ++ G PL LAA++G + L++ E + H
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR-EFSGAAAHH 252
Score = 102 bits (257), Expect = 2e-24
Identities = 37/178 (20%), Positives = 55/178 (30%), Gaps = 29/178 (16%)
Query: 590 GRTPLWAAASMGHASCVALLL--------FWGAYVDTIDAEGRTVLSVAAA---QGNIDV 638
R L++ S G + LL + T + G+T L A G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ 698
+ LL G + + G + LH A + + + L+E GA V
Sbjct: 62 IMPLLQIDKDSGNP---KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL 118
Query: 699 VDN-------------DGRAPLILAAQDGHYHLVEMFLEQ--YEANVNQKSHDGRTAL 741
G PL LAA + +V LE A++ G T L
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176
Score = 102 bits (256), Expect = 2e-24
Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 43/195 (22%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLK-----------SCEALDLELVDKHGQTALNVAAHQ 388
+ S LH + ++ +K ++ G+ L++AA
Sbjct: 87 FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146
Query: 389 GFVDAVQILLEAG---ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGR 445
D V LLE A++ TD G T L H+ V + +
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVL-------HALV----------MIADNSPEN 189
Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
+AL + G L+ + L ++ +G T L +A G +I I
Sbjct: 190 SALVIHMYDGLLQ---------MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Query: 506 LEYDA---DINQQDN 517
L+ + + +
Sbjct: 241 LQREFSGAAAHHHHH 255
Score = 45.9 bits (109), Expect = 2e-05
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 873 HMRIILGSSKVGEK-ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETV 931
H +++ + + I +G L + S+H G ++AAK G +
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236
Query: 932 LRLL 935
R +
Sbjct: 237 FRHI 240
Score = 40.2 bits (94), Expect = 0.002
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 13/60 (21%)
Query: 889 IAAQEGHEDCVRLLLHYGAD-------------PKHSDHCGRNAFRVAAKSGHETVLRLL 935
IA ++ CV+LL+ GAD + G +AA + V+ L
Sbjct: 96 IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155
Score = 37.8 bits (88), Expect = 0.010
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 26/105 (24%)
Query: 888 SIAAQEGHEDCVRLLLHYGADPKHS-----------DHCGRNAFRVAAKSGH-ETVLRLL 935
+ Q+G C+ LL D + + G +A +A + + V L+
Sbjct: 51 VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV 110
Query: 936 KQYAD----DSEYFVHYYYYYNS----------AKSGHETVLRLL 966
+ AD F + A + V+ L
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155
Score = 36.7 bits (85), Expect = 0.028
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 20/73 (27%)
Query: 888 SIAAQEGHEDCVRLLL---HYGADPKHSDHCGR----------------NAFRVAAKSGH 928
S+AA D V LL H A + +D G +A + G
Sbjct: 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200
Query: 929 -ETVLRLLKQYAD 940
+ RL
Sbjct: 201 LQMGARLCPTVQL 213
Score = 32.1 bits (73), Expect = 0.70
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDH 914
+AA+EG + R +L + H
Sbjct: 227 LAAKEGKIEIFRHILQREFSGAAAHH 252
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 143 bits (361), Expect = 1e-37
Identities = 51/272 (18%), Positives = 95/272 (34%), Gaps = 21/272 (7%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
K ++ L +L I + T L + + Q +V+ +
Sbjct: 60 KMKLEAFLQRL-LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118
Query: 400 AGANINH-TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
N+N D G TPL + + +VK L++ G++ D G + L A +
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178
Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL------------IASAYMGHADIVSSIL 506
+ LL + DS RT L A+A ++ I+
Sbjct: 179 DSG-----TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233
Query: 507 EYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAF 566
+ Q + + + + D + + + ++ +D G T L +AA
Sbjct: 234 KKQNRPIQSGTNEKESK-PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292
Query: 567 EGHRDVCEILLENEADQDHIDKSGRTPL-WAA 597
G+ + + LL+ AD +KSG P+ + A
Sbjct: 293 LGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 137 bits (346), Expect = 1e-35
Identities = 51/313 (16%), Positives = 95/313 (30%), Gaps = 41/313 (13%)
Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
N N + L+ + + L ++ N + ++ L+
Sbjct: 53 VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE- 111
Query: 461 IVLGPLCVVKLLLAAGAHVNAA-DSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
V ++N D G T L + + ++V ++++ ++ DN G
Sbjct: 112 -------VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 164
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
+ L + V + D ++L + ED T L
Sbjct: 165 ESCLVKAVKSVNNYD-SGTFEALLDYLYPCLILEDSMNRTILHHII-------------- 209
Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
SG T AAA + ++ + D +
Sbjct: 210 -------ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262
Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
+ LD I+ + L+ Q D+ G T L+ AA G+ + ALL+ GA
Sbjct: 263 LENLDLKWIIANM--------LNAQ--DSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312
Query: 700 DNDGRAPLILAAQ 712
+ G P+ A
Sbjct: 313 NKSGLRPVDFGAG 325
Score = 134 bits (339), Expect = 9e-35
Identities = 49/313 (15%), Positives = 104/313 (33%), Gaps = 16/313 (5%)
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
N +D RTA + L + PL ++K L + + N + L +
Sbjct: 15 NGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPE 74
Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH-EDRE 556
++ +S+ ++ N + + +V ++ D
Sbjct: 75 IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF----DSLLQEVNDAFPNTQLNLNIPVDEH 130
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA----SCVALLLFW 612
G TPL + ++ + L+++ +++ + D G + L A + + ALL +
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190
Query: 613 GAYVDTIDAEGRTVL----SVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN 668
+ D+ RT+L + G LD M R S +
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250
Query: 669 CGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEA 728
+ + E ++ D++G L +AA+ G+ +V+ L+ A
Sbjct: 251 --PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-A 307
Query: 729 NVNQKSHDGRTAL 741
+ + G +
Sbjct: 308 DPFIANKSGLRPV 320
Score = 74.7 bits (183), Expect = 2e-14
Identities = 37/281 (13%), Positives = 85/281 (30%), Gaps = 52/281 (18%)
Query: 657 QTGSLDEQHRDNCGWTPLHYAAIE-GHEEVCRALLEAGAKVD-QVDNDGRAPLILAAQDG 714
S + + + + +EV A ++ VD G PL
Sbjct: 83 NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 142
Query: 715 HYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTV 774
+ LV+ ++ + +N + G + L + +
Sbjct: 143 NLELVKHLVK-HGSNRLYGDNMGESCL-----------------------VKAVKS---- 174
Query: 775 EDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYL 834
+ ++ L L + + ++ + + HH + +Y
Sbjct: 175 ----------VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 224
Query: 835 CSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKIS------ 888
+ G ++ + + T+ + P+ + +D+ + + + ++
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE-RKDSILENLDLKWIIANMLNAQDSNG 283
Query: 889 -----IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAA 924
IAA+ G+ V LL YGADP ++ G A
Sbjct: 284 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 73.9 bits (181), Expect = 3e-14
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 14/131 (10%)
Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHG--------------QTA 381
+ + DS N+++LH + + + K + + + K
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
N ++ + + +N D G T L A+ G+ ++V LL GAD ++
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 313
Query: 442 MGGRTALRAAA 452
G + A
Sbjct: 314 KSGLRPVDFGA 324
Score = 43.1 bits (101), Expect = 3e-04
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH----ETVLRLLKQYADD 941
+ + V+ L+ +G++ + D+ G + A KS + T LL
Sbjct: 137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193
Score = 34.6 bits (79), Expect = 0.16
Identities = 34/278 (12%), Positives = 75/278 (26%), Gaps = 43/278 (15%)
Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
L +E+ +L + + + D V + N+N
Sbjct: 65 AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 124
Query: 732 QKS-HDGRTAL----RVNMKNVTKLSFWYLLIQPLLNIILSSLF---PLTVEDLFTKFST 783
G T L + + K L++ N + L K
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKH-----LVKHGSNRLYGDNMGESCLV------KAVK 173
Query: 784 TNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLI 843
+ + ++ L L + + ++ + + HH + +Y + G ++
Sbjct: 174 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233
Query: 844 HAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLL 903
+ + T+ + P+ + ++ + + L
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGE-----------------------RKDSILENLDLKW 270
Query: 904 HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
D G +AA+ G+ V LL AD
Sbjct: 271 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 134 bits (341), Expect = 2e-37
Identities = 46/116 (39%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
K G T L+ AA G + V+ LL GA++N +G TPL A+ GH+ +VKLLL G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL 490
ADVN G T A GH E +VKLL A GA VNA
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHE---------IVKLLDAKGADVNARSWGSSHHH 112
Score = 119 bits (301), Expect = 7e-32
Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
G G T L AA GH E VK LL+ GA VNA +G T L +
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEE---------VKKLLSKGADVNARSKDGNTPLHLA 49
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
A GHA+IV +L AD+N + DG T ++ +G+ ++V +L KGA V+
Sbjct: 50 AKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK-----KNGHHEIVKLLDAKGADVNAR 104
Query: 554 DREGMTPL 561
Sbjct: 105 SWGSSHHH 112
Score = 112 bits (283), Expect = 2e-29
Identities = 44/171 (25%), Positives = 56/171 (32%), Gaps = 56/171 (32%)
Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCV 606
G ++G TPL AA GH + + LL AD + K G TPL AA GHA V
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 607 ALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHR 666
LLL GA +++ R
Sbjct: 59 KLLLAKGA--------------------DVNA---------------------------R 71
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
G TP H A GH E+ + L GA V+ H+H
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH-------HHH 115
Score = 110 bits (279), Expect = 6e-29
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
G + D G T L AA G+ + V +LL +G A D R G T
Sbjct: 1 GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKG------A--------DVNARSKDGNT 44
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
PLH AA GH E+ + LL GA V+ DG P LA ++GH+ +V++ + A+VN
Sbjct: 45 PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNA 103
Query: 733 KSHDGRTAL 741
+S
Sbjct: 104 RSWGSSHHH 112
Score = 107 bits (269), Expect = 1e-27
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
DG T L +A +G+A+ V LL KGA V+ ++G TPL +AA GH
Sbjct: 2 HMWG--SKDGNTPLHNAA-----KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54
Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL 627
++ ++LL AD + K G TP A GH V LL GA V+
Sbjct: 55 AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 97.1 bits (243), Expect = 5e-24
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH + +K L S A D+ K G T L++AA G + V++LL GA++N
Sbjct: 13 LHNAAKNGHAEEVK-KLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTAL 448
+G TP A GH +VKLL GADVN G
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 47.4 bits (114), Expect = 9e-07
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
AA+ GH + V+ LL GAD G +AAK+GH E V LL + AD
Sbjct: 15 NAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Score = 45.4 bits (109), Expect = 5e-06
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA+ GH + V+LLL GAD G +A K+GH E V L + AD
Sbjct: 48 LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 34.3 bits (80), Expect = 0.038
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNA 919
+A + GH + V+LL GAD +
Sbjct: 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 132 bits (334), Expect = 4e-36
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 12/141 (8%)
Query: 372 ELVDKHG---QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
HG L AA G D V+IL+ GA++N D G TPL A+ GH +V+
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVE 64
Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
+LL++GADVN D G T L AA+ GHLE + ++LL GA VNA D G+T
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLE---------IAEVLLKHGADVNAQDKFGKT 115
Query: 489 ALIASAYMGHADIVSSILEYD 509
A S G+ D+ + + +
Sbjct: 116 AFDISIGNGNEDLAEILQKLN 136
Score = 127 bits (323), Expect = 1e-34
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 401 GANINHTD-CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
G++ +H + L A+ G V++L+ +GADVN D G T L A GHLE+
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
V++LL GA VNA D+ G T L +A++GH +I +L++ AD+N QD G
Sbjct: 63 ---------VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 520 RTALSVSALCVPSSDGYAKVVSILLE 545
+TA +S +G + IL +
Sbjct: 114 KTAFDISI-----GNGNEDLAEILQK 134
Score = 110 bits (277), Expect = 2e-28
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 48/180 (26%)
Query: 546 KGAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
+G+ H + LL AA G D IL+ N AD + D+ G TPL+ A + GH
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
V +LL GA +++
Sbjct: 62 IVEVLLKNGA--------------------DVNA-------------------------- 75
Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
D G+TPLH AA GH E+ LL+ GA V+ D G+ ++ +G+ L E+ +
Sbjct: 76 -VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 107 bits (269), Expect = 2e-27
Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
L + + ++ L + A D+ D++G T L +A G ++ V++LL+ GA++N
Sbjct: 18 LLEAARAGQDDEVR-ILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
D G+TPL A++ GH + ++LL+ GADVN D G+TA + G+ +
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNED-------- 127
Query: 467 CVVKLLL 473
+ ++L
Sbjct: 128 -LAEILQ 133
Score = 103 bits (260), Expect = 4e-26
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 510 ADIN-QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG 568
+ + +D L +A G V IL+ GA V+ +D G+TPL +A G
Sbjct: 4 SHHHHHHGSDLGKKLLEAA-----RAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG 58
Query: 569 HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
H ++ E+LL+N AD + +D G TPL AA +GH +LL GA V+ D G+T
Sbjct: 59 HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118
Query: 629 VAAAQGNIDVVNQLL 643
++ GN D+ L
Sbjct: 119 ISIGNGNEDLAEILQ 133
Score = 97.8 bits (245), Expect = 3e-24
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
++ L AA G D V L+ G ++ +D G TPL+ A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANG------------ADVNA--KDEYGLTPLYLATAH 57
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA 740
GH E+ LL+ GA V+ VD G PL LAA GH + E+ L+ A+VN + G+TA
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTA 116
Query: 741 L 741
Sbjct: 117 F 117
Score = 45.5 bits (109), Expect = 9e-06
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 693 GAKVDQVD-NDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL----RVNMKN 747
G+ +D L+ AA+ G V + + A+VN K G T L
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLE 61
Query: 748 VTKL 751
+ ++
Sbjct: 62 IVEV 65
Score = 43.9 bits (105), Expect = 3e-05
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+AA GH + +LL +GAD D G+ AF ++ +G+E + +L++
Sbjct: 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 43.5 bits (104), Expect = 3e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+G+K+ AA+ G +D VR+L+ GAD D G +A GH E V LLK AD
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Score = 41.2 bits (98), Expect = 3e-04
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+A GH + V +LL GAD D G +AA GH E LLK AD
Sbjct: 53 LATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 130 bits (328), Expect = 6e-34
Identities = 49/256 (19%), Positives = 77/256 (30%), Gaps = 40/256 (15%)
Query: 486 GRTALIASAYMGHADIVSSILEY----DADIN----QQDNDGRTALSVSALCVPSSDGYA 537
R L G D + +L + + ++ + G+T L + L S G
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLN--LSAGRN 62
Query: 538 KVVSILLEKGAK-----------VDHEDREGMTPLLVAAFEGHRDVCEILLENEAD---- 582
+ ILL+ K G T L +A + E+L+E AD
Sbjct: 63 DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122
Query: 583 ----------QDHIDKSGRTPLWAAASMGHASCVALLL---FWGAYVDTIDAEGRTVLSV 629
+ G PL AA V L A + D+ G TVL
Sbjct: 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182
Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQ--TGSLDEQHRDNCGWTPLHYAAIEGHEEVCR 687
A + N M L + + E +N G +PL AA G + +
Sbjct: 183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242
Query: 688 ALLEAGAKVDQVDNDG 703
++ +
Sbjct: 243 HIIRREIADAAAHHHH 258
Score = 125 bits (315), Expect = 3e-32
Identities = 47/236 (19%), Positives = 77/236 (32%), Gaps = 56/236 (23%)
Query: 375 DKHGQTALNVAA---HQGFVDAVQILLEAG-----------ANINHTDCEGWTPLRSASW 420
G+T L A G D + ILL+ + G T L A
Sbjct: 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102
Query: 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480
V+LL++ GADV+ G +
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPK----------------------------DEG 134
Query: 481 AADSEGRTALIASAYMGHADIVSSILE---YDADINQQDNDGRTALSVSAL----CVPSS 533
G L +A IV + E AD+ +QD+ G T L ++
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194
Query: 534 DGYAKVVSILLEKGAKVDHE-------DREGMTPLLVAAFEGHRDVCEILLENEAD 582
K+ +LL K AK+ + + +G++PL++AA G + + ++ E
Sbjct: 195 KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
Score = 98.7 bits (246), Expect = 5e-23
Identities = 40/179 (22%), Positives = 57/179 (31%), Gaps = 30/179 (16%)
Query: 590 GRTPLWAAAS----MGHASCVALLLFWGAYVDTIDAE----GRTVLSVAAAQ---GNIDV 638
R L+ S G ++ LL + + G+T L A G D
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ 698
+ LLD G + + D G T LH A + L+E GA V
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDV---YYRGQTALHIAIERRCKHYVELLVEKGADVHA 121
Query: 699 VDN--------------DGRAPLILAAQDGHYHLVEMFLEQ--YEANVNQKSHDGRTAL 741
G PL LAA H+V E +A++ ++ G T L
Sbjct: 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Score = 45.2 bits (107), Expect = 4e-05
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 340 DSKNQSVLHKLCA-ENNINLLKTFLKSCEALDLE-------------LVDKHGQTALNVA 385
DS+ +VLH L A +N F+ L L L++ G + L +A
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232
Query: 386 AHQGFVDAVQILLEAGANINHTD 408
A G + Q ++
Sbjct: 233 AKTGKIGIFQHIIRREIADAAAH 255
Score = 37.1 bits (86), Expect = 0.020
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 14/61 (22%)
Query: 889 IAAQEGHEDCVRLLLHYGAD--------------PKHSDHCGRNAFRVAAKSGHETVLRL 934
IA + + V LL+ GAD + G +AA + ++
Sbjct: 99 IAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158
Query: 935 L 935
L
Sbjct: 159 L 159
Score = 35.1 bits (81), Expect = 0.070
Identities = 11/46 (23%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 888 SIAAQEGHEDCVRLLLHYG---ADPKHSDHCGRNAFRVAAKSGHET 930
S+AA V L G AD + D G T
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190
Score = 31.3 bits (71), Expect = 1.4
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDH 914
+AA+ G + ++ + H
Sbjct: 231 MAAKTGKIGIFQHIIRREIADAAAHH 256
Score = 30.1 bits (68), Expect = 2.7
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 891 AQEGHEDCVRLLLHYGADP-----------KHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
G D + +LL + + G+ A +A + V L+++
Sbjct: 57 LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116
Query: 939 AD 940
AD
Sbjct: 117 AD 118
Score = 29.4 bits (66), Expect = 5.0
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHC----GRNAFRVAA---KSGH-ETVLRLLKQYADD 941
+ +G E + LL + + G+ A +G +T+ LL
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75
Query: 942 SEYFVHYYYYYNSAKSGHETVL 963
+ +T L
Sbjct: 76 GNMREFINSPFRDVYYRGQTAL 97
Score = 29.0 bits (65), Expect = 6.3
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 888 SIAAQEGHEDCVRLLLHYGADPKHS-------DHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
+ + LLL A ++ G + +AAK+G ++++
Sbjct: 190 TRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249
Query: 940 DDSEYFVHYYY 950
D+ H+++
Sbjct: 250 ADAAAHHHHHH 260
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 122 bits (309), Expect = 3e-33
Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 9/102 (8%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
+G+T L++AA G ++ V++LLEAGA++N D G TPL A+ GH VVKLLL++GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH 478
VN D GRT L AA GHLE VVKLLL AGA+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGAY 93
Score = 104 bits (263), Expect = 4e-27
Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
GRT L AA GHLEV VKLLL AGA VNA D GRT L +A GH ++V
Sbjct: 2 GRTPLHLAARNGHLEV---------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
+LE AD+N +D +GRT L ++A +G+ +VV +LLE GA
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLEAGA 92
Score = 99.7 bits (250), Expect = 3e-25
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
G TPLH AA GH EV + LLEAGA V+ D +GR PL LAA++GH +V++ LE A+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD 60
Query: 730 VNQKSHDGRTAL 741
VN K +GRT L
Sbjct: 61 VNAKDKNGRTPL 72
Score = 98.6 bits (247), Expect = 6e-25
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
+GRT L ++A +G+ +VV +LLE GA V+ +D+ G TPL +AA GH +V ++LL
Sbjct: 1 NGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
E AD + DK+GRTPL AA GH V LLL GAY
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 96.3 bits (241), Expect = 4e-24
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 14/103 (13%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
GRT L +AA G+++VV LL+ G A D +D G TPLH AA GH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG------A--------DVNAKDKNGRTPLHLAARNGH 47
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
EV + LLEAGA V+ D +GR PL LAA++GH +V++ LE
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 95.9 bits (240), Expect = 5e-24
Identities = 50/138 (36%), Positives = 59/138 (42%), Gaps = 47/138 (34%)
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
G TPL +AA GH +V ++LLE AD + DK+GRTPL AA GH V LLL GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
+ +D G TPLH
Sbjct: 62 NA-----------------------------------------------KDKNGRTPLHL 74
Query: 677 AAIEGHEEVCRALLEAGA 694
AA GH EV + LLEAGA
Sbjct: 75 AARNGHLEVVKLLLEAGA 92
Score = 83.9 bits (209), Expect = 8e-20
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
LH ++ ++K L A D+ DK+G+T L++AA G ++ V++LLEAGA++N
Sbjct: 6 LHLAARNGHLEVVK-LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
D G TPL A+ GH VVKLLL++GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 50.0 bits (121), Expect = 7e-08
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
+GR PL LAA++GH +V++ LE A+VN K +GRT L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPL 39
Score = 47.7 bits (115), Expect = 4e-07
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+AA+ GH + V+LLL GAD D GR +AA++GH V++LL
Sbjct: 41 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 47.3 bits (114), Expect = 6e-07
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
+AA+ GH + V+LLL GAD D GR +AA++GH E V LL+ AD
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Score = 31.2 bits (72), Expect = 0.30
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 889 IAAQEGHEDCVRLLLHYGA 907
+AA+ GH + V+LLL GA
Sbjct: 74 LAARNGHLEVVKLLLEAGA 92
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 122 bits (308), Expect = 5e-33
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
+ L+ G+++ + L A+ G V++L+ +GADV D G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
T L AA GHLE VVKLLL AGA V A D G+TA S G+ D+
Sbjct: 58 STPLHLAARNGHLE---------VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
Score = 113 bits (286), Expect = 5e-30
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 418 ASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA 477
S H L+ G+ + SD L AA G + V++L+A GA
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG-SD--LGKKLLEAARAGQDDE---------VRILMANGA 48
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
V A D G T L +A GH ++V +LE AD+ QD G+TA +S +G
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI-----DNGNE 103
Query: 538 KVVSIL 543
+ IL
Sbjct: 104 DLAEIL 109
Score = 103 bits (260), Expect = 2e-26
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+ L AA G D V+IL+ GA++ D G TPL A+ GH VVKLLL++
Sbjct: 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
GADV D G+TA + G+ ++ +L
Sbjct: 80 GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 103 bits (258), Expect = 3e-26
Identities = 35/159 (22%), Positives = 49/159 (30%), Gaps = 50/159 (31%)
Query: 564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
+ H L+ + + L AA G V +L+ GA V
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAA----- 52
Query: 624 RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE 683
+D G TPLH AA GH
Sbjct: 53 ------------------------------------------KDKNGSTPLHLAARNGHL 70
Query: 684 EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
EV + LLEAGA V D G+ ++ +G+ L E+
Sbjct: 71 EVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 102 bits (257), Expect = 4e-26
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
+ H S ++ + + +D L +A G V IL+ GA V +
Sbjct: 2 SSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAA-----RAGQDDEVRILMANGADVAAK 53
Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
D+ G TPL +AA GH +V ++LLE AD DK G+T + G+ +L
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 100 bits (252), Expect = 2e-25
Identities = 40/111 (36%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
SS + S L+ +G+ + + LL AA G D IL+ N AD DK+G
Sbjct: 2 SSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
TPL AA GH V LLL GA V D G+T ++ GN D+ L
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 96.1 bits (240), Expect = 8e-24
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
++ + + L+ RG + H + L AA G ++ R L
Sbjct: 1 GSSHHHHHHSSGLVPRG------S-----------HMGSDLGKKLLEAARAGQDDEVRIL 43
Query: 690 LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
+ GA V D +G PL LAA++GH +V++ LE A+V + G+TA +++ N
Sbjct: 44 MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDN 100
Score = 67.2 bits (165), Expect = 1e-13
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
S L + + ++ L + A D+ DK+G T L++AA G ++ V++LLE
Sbjct: 21 GSDLGKKLLEAARAGQDDEVR-ILMANGA-DVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
AGA++ D G T + G+ + ++L
Sbjct: 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 52.6 bits (127), Expect = 1e-08
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD-DSEYFV 946
AA+ G +D VR+L+ GAD D G +AA++GH E V LL+ AD ++
Sbjct: 30 EAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 947 HYYYYYNSAKSGHETVLRLLK 967
+ S +G+E + +L+
Sbjct: 90 GKTAFDISIDNGNEDLAEILQ 110
Score = 42.6 bits (101), Expect = 5e-05
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
+ H L+ G+ SD AA++G + +R+L
Sbjct: 1 GSSHHHHHHSSGLVPRGSH-MGSD--LGKKLLEAARAGQDDEVRIL 43
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 77.5 bits (190), Expect = 4e-15
Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 12/204 (5%)
Query: 319 KTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEA-LDLELVDKH 377
+ + S + ++L + + A ++ +
Sbjct: 175 SIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQD 234
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
T L A + A + LL+ GAN+N D G PL A+ GH+ + L L+ GAD+
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
D GR L A + + V L LA AA + +
Sbjct: 295 GARDSEGRDPLTIAMETANAD--------IVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346
Query: 498 HADIVSSILEYDADINQQDNDGRT 521
+ + S ++++ +D T
Sbjct: 347 FSLMASDD---PEKLSRRSHDLHT 367
Score = 76.0 bits (186), Expect = 9e-15
Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 7/137 (5%)
Query: 477 AHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ--DNDGRTALSVSALCVPSSD 534
+ + G AS + ++ L + AD+N D T L + +
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT-----AA 245
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
LL+ GA V+ D G PL A GH + + L+ AD D GR PL
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Query: 595 WAAASMGHASCVALLLF 611
A +A V LL
Sbjct: 306 TIAMETANADIVTLLRL 322
Score = 74.4 bits (182), Expect = 4e-14
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 528 LCVPSSDGYAKVVSILLEKGAKVD--HEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
++ L GA V+ + ++ TPL+ A CE LL+N A+ +
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
D +GR PL A +GH L L GA + D+EGR L++A N D+V L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
Query: 646 GM 647
M
Sbjct: 324 KM 325
Score = 71.0 bits (173), Expect = 5e-13
Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA--EGRTVLSVAAAQGN 635
E ++ G A+ +A L GA V+ ++ + T L A A +
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
+ LL Q G+ + D+ G PLH+A I GH + L+ GA
Sbjct: 248 LLACEFLL-------------QNGA-NVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 696 VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDG 737
+ D++GR PL +A + + +V +
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335
Score = 70.6 bits (172), Expect = 6e-13
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 466 LCVVKLLLAAGAHVNAADS--EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
L + LA GA VN + + T LI + +L+ A++NQ D+ GR L
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272
Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
+ + G+ + + L++GA + D EG PL +A + D+ +L + +
Sbjct: 273 HHATIL-----GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327
Query: 584 DHIDKS 589
+
Sbjct: 328 AEAAQG 333
Score = 65.2 bits (158), Expect = 4e-11
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG--GRTALRAAAWGGHLEVTIVLGPLCV 468
G R++ + L GADVN + G T L A L
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT---------AANSLLA 250
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
+ LL GA+VN ADS GR L + +GH + L+ AD+ +D++GR L++
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Score = 58.6 bits (141), Expect = 4e-09
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
TPL A C LL+ GA V+Q D+ GR PL A GH L +FL + A+
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL-KRGAD 293
Query: 730 VNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFP--LTVEDLFTKFS 782
+ + +GR L + M+ L + + + T D+F FS
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348
Score = 49.0 bits (116), Expect = 5e-06
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
+ A GH L L GAD D GR+ +A ++ + ++ LL+
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 35.9 bits (82), Expect = 0.065
Identities = 16/119 (13%), Positives = 31/119 (26%)
Query: 820 SEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILG 879
+ + + + R L + + S + + + + G
Sbjct: 172 PKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG 231
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+ A LL GA+ +D GR A GH + L +
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 75.4 bits (185), Expect = 6e-15
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
TAL ++ +V L++ +D + +G T L + + ++
Sbjct: 166 HEPDETALHLAVRS--VDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223
Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
LL +A + ++SG TPL A + H C LL
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 72.3 bits (177), Expect = 6e-14
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 10/166 (6%)
Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
+D R I + YM A + + L +DG
Sbjct: 100 GSDMIARKDYITAKYMERR-YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVD--- 155
Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRD---VCEILLENEADQDHIDKSGRTPLWAA 597
L + + + T L +A R + + L++N + D G T L
Sbjct: 156 ---LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212
Query: 598 ASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
+A C+ LLL A ++ + G T L +A + L
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 72.0 bits (176), Expect = 9e-14
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 377 HGQTALNVA---AHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+TAL++A + + V L++ N++ +G T L ++ +KLLL+
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
A + ++ G T L A H +L
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 67.7 bits (165), Expect = 2e-12
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
T L +A + ++ ++ + + G T LHY +
Sbjct: 166 HEPDETALHLAVRSVDRTSLH------IVDFLVQNSGNLDKQTGK-----GSTALHYCCL 214
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
+ E + LL A ++ + G PL +A + H H E+ + N H
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270
Score = 67.3 bits (164), Expect = 3e-12
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 19/146 (13%)
Query: 417 SASWGGHSAVVKLLLQSGADVN------CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
A + G D+ TAL A L +V
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR------TSLHIVD 189
Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
L+ +++ +G TAL +A+ + +L A I + G T L ++
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL- 248
Query: 531 PSSDGYAKVVSILLE--KGAKVDHED 554
+ +L + G H
Sbjct: 249 ----KHEHCEELLTQALSGRFNSHVH 270
Score = 66.6 bits (162), Expect = 5e-12
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 18/132 (13%)
Query: 469 VKLLLAAGAHVNA------ADSEGRTAL---IASAYMGHADIVSSILEYDADINQQDNDG 519
+ A G + TAL + S IV +++ ++++Q G
Sbjct: 146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205
Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE- 578
TAL L A+ + +LL A ++ + G TPL +A H E+L +
Sbjct: 206 STALHYCCLT-----DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Query: 579 ---NEADQDHID 587
H++
Sbjct: 261 LSGRFNSHVHVE 272
Score = 58.9 bits (142), Expect = 2e-09
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 340 DSKNQSVLHKLC-AENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL 398
+++ LH + + +L + +L+ G TAL+ + +++LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
A+I + G TPL A H +LL Q+
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 58.1 bits (140), Expect = 4e-09
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 665 HRDNCGWTPLHYAAIEG---HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
+ T LH A + L++ +D+ G L + +++
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223
Query: 722 FLEQYEANVNQKSHDGRTAL 741
L + +A++ + G T L
Sbjct: 224 LL-RGKASIEIANESGETPL 242
Score = 50.4 bits (120), Expect = 9e-07
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSEYF 945
+ + +C++LLL A + ++ G +A + HE LL Q +
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 268
Query: 946 VHYYYYYN 953
VH Y +
Sbjct: 269 VHVEYEWR 276
Score = 35.7 bits (82), Expect = 0.050
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
+ V L+ + G A + + L+LL +
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 72.7 bits (178), Expect = 6e-14
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 18/130 (13%)
Query: 391 VDAVQILLEAGANIN------HTDCEGWTPLRSASWGGHSA---VVKLLLQSGADVNCSD 441
+ +V G + L A + A +V ++Q+G ++
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 223
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
G TAL AA + +KLLL A V + G TAL + H +
Sbjct: 224 ADGNTALHYAALYNQPDC---------LKLLLKGRALVGTVNEAGETALDIARKKHHKEC 274
Query: 502 VSSILEYDAD 511
+ + A
Sbjct: 275 EELLEQAQAG 284
Score = 72.7 bits (178), Expect = 7e-14
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
L ++ ++ +V +++ G +D + +G T L AA D ++LL
Sbjct: 189 PEELVLHLA--VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246
Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
+ A ++++G T L A H C LL
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 71.2 bits (174), Expect = 2e-13
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 427 VKLLLQSGADVNCSDMG------GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480
V +G D G L A + L +V ++ G H++
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ------ASLPLVDFIIQNGGHLD 220
Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
A ++G TAL +A D + +L+ A + + G TAL ++
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Score = 70.4 bits (172), Expect = 3e-13
Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 18/154 (11%)
Query: 447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA------ADSEGRTALIASAYMGHAD 500
A R L I L V A G A + L + + +
Sbjct: 145 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 204
Query: 501 ---IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
+V I++ ++ + DG TAL +AL + +LL+ A V + G
Sbjct: 205 SLPLVDFIIQNGGHLDAKAADGNTALHYAALY-----NQPDCLKLLLKGRALVGTVNEAG 259
Query: 558 MTPLLVAAFEGHRDVCEILLENEADQ----DHID 587
T L +A + H++ E+L + +A H+D
Sbjct: 260 ETALDIARKKHHKECEELLEQAQAGTFAFPLHVD 293
Score = 69.6 bits (170), Expect = 7e-13
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 377 HGQTALNVA---AHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
+ L++A A+Q + V +++ G +++ +G T L A+ +KLLL+
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
A V + G TAL A H E +L
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 69.6 bits (170), Expect = 8e-13
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 556 EGMTPLLVAAFEGHRD---VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
L +A ++ + + +++N D G T L AA C+ LLL
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
A V T++ G T L +A + + + L
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 61.2 bits (148), Expect = 4e-10
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
+ G T LHYAA+ + + LL+ A V V+ G L +A + H E+ +
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 59.6 bits (144), Expect = 1e-09
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 644 DRGMILGCLAGGRQTG-SLDEQHRDNCGWTPLHYAAIEGHE---EVCRALLEAGAKVDQV 699
D +L A G+ G L LH A ++ + +++ G +D
Sbjct: 163 DLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK 222
Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
DG L AA +++ L + A V + G TAL + K
Sbjct: 223 AADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKK 269
Score = 55.8 bits (134), Expect = 3e-08
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 340 DSKNQSVLHKLC-AENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL 398
+ + VLH N +L L+ G TAL+ AA D +++LL
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246
Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
+ A + + G T L A H +LL Q+ A
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Score = 48.8 bits (116), Expect = 4e-06
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSEYF 945
+ AA DC++LLL A + G A +A K H+ LL+Q A +
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 289
Query: 946 VH 947
+H
Sbjct: 290 LH 291
Score = 35.4 bits (81), Expect = 0.087
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 899 VRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
V ++ G G A AA + + LLK A
Sbjct: 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 2e-12
Identities = 74/412 (17%), Positives = 140/412 (33%), Gaps = 105/412 (25%)
Query: 9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALII-GGPGSGKTTLCKEIVFPSAESSFS 67
+K R ++KL L +P N ++I G GSGKT + ++ S+
Sbjct: 127 AKYNVSRLQPYLKLRQALL---ELRPAKN---VLIDGVLGSGKTWVALDVC-----LSYK 175
Query: 68 QQHNLRKKL--LAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKA 125
Q + K+ L C S + +Q + + ++S S + + SI+A
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS---NIKLRIHSIQA 232
Query: 126 LLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID---ETHVTNKKIYSDKATC 182
L+ +LL+ + ++ L++ L +++ K ++ + + +T + K
Sbjct: 233 ELR--RLLK--SKPYENCLLV-LLNVQNAKA-----WNAFNLSCKILLTTR----FK--- 275
Query: 183 SIADLLARNH--HLF---PPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQ 237
+ D L+ H+ + KS+ L + DL R++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTL----TPDEVKSL---LLKYLDCRPQDLP-----REVL 323
Query: 238 QYILLRLAS-EESLRVHMNR-DTAEMLN--QLHIKSNGCFLYLE-----RVLDGISNGLI 288
RL+ ES+R + D + +N +L LE ++ D L
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLS 379
Query: 289 ILREIKDIP-GTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVL 347
+ IP L+ +W + +V + + L
Sbjct: 380 VFPPSAHIPTILLS--LIWFD---------VIKSDVMV------------VVNK-----L 411
Query: 348 HK--LCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
HK L + K S ++ LEL + A H+ VD I
Sbjct: 412 HKYSLVEKQP----KESTISIPSIYLEL---KVKLENEYALHRSIVDHYNIP 456
Score = 65.3 bits (158), Expect = 9e-11
Identities = 91/657 (13%), Positives = 196/657 (29%), Gaps = 188/657 (28%)
Query: 253 HMNRDTAEMLNQLH------------IKSNGCFLYLERVLDGISNGLIILREIKDI---P 297
HM+ +T E Q + + C + V D + ++ EI I
Sbjct: 6 HMDFETGEH--QYQYKDILSVFEDAFVDNFDC----KDVQD-MPKSILSKEEIDHIIMSK 58
Query: 298 GTLNGLYL--------------------------WLSQRL--------LSTKQFLKTKEV 323
++G +L + + T+ +++ ++
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 324 ---SDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINL--LKTFLKSCEALDLELVDKHG 378
+ + VSR+ + K + L +L N+ + + K+ ALD+ +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKV 176
Query: 379 QTALNVAAH---QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
Q ++ ++ + +LE + + WT HS+ +KL + S
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHS-- 229
Query: 436 DVNCSDMGGRTALRA-AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
+ LR + +VL + K NA + + L+ +
Sbjct: 230 --------IQAELRRLLKSKPYENCLLVLLNVQNAK-------AWNAFNLSCKI-LLTTR 273
Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
+ D +S+ ++ + T V +L K + + + E
Sbjct: 274 FKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLL-------LKYLDC---RPQDLPREV 322
Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA--SCVALL--- 609
P ++ E+ +D + + S + +L
Sbjct: 323 LTTN-PRRLSII------------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 610 ----LFWGAYV---DT-IDAEGRTVLSV----AAAQGNIDVVNQLLDRGMILGCLAGGRQ 657
+F V I +LS+ + VVN+L ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKES 424
Query: 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG--- 714
T S+ + + + A+ H R++++ D+D P L D
Sbjct: 425 TISIPSIYLELKV-KLENEYAL--H----RSIVDHYNIPKTFDSDDLIPPYL---DQYFY 474
Query: 715 -H--YHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYL----LIQPLLNIILS 767
H +HL + E E +T +L L Q + + +
Sbjct: 475 SHIGHHLKNI--EHPE-------------------RMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 768 SLFPLTVEDLFTKFSTTNPHISRQE--YKKRL----HILRKIISIANNEHIILFHHS 818
++ + + P+I + Y++ + L KI E++I ++
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-----EENLICSKYT 565
Score = 53.7 bits (128), Expect = 3e-07
Identities = 89/575 (15%), Positives = 159/575 (27%), Gaps = 181/575 (31%)
Query: 500 DIVSSIL---EYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG-----AKVD 551
D+ SIL E D I +D T L + K V +L + +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 552 HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT---PLW----AAASMGHAS 604
E R+ ++ + RD L N D K + P A + A
Sbjct: 100 TEQRQ--PSMMTRMYIEQRDR----LYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQ---------GNI------------DVVNQLL 643
V + G+ G+T +++ I V+ L
Sbjct: 152 NVLIDGVLGS--------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 644 DRGMILGCLAGGRQTGSLDEQHR------------------------DNCGWTPLHYAAI 679
+ R S + + R N + A
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAF 262
Query: 680 EGHEEVCRALLEAGAK--VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD- 736
C+ LL K D + + L E+ ++ + D
Sbjct: 263 NLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDL 318
Query: 737 GRTALRVN----------MKN-VTKLSFW-YLLIQPLLNIILSSLFPLTVEDLFTKFSTT 784
R L N +++ + W ++ L II SSL L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-----NVL------- 366
Query: 785 NPHISRQEYKKRLHILRKIISIANNEHI------IL-FHHSFSEWLLDVKHCTKRYLCSL 837
P R+ + + L + + HI ++ F S+ ++ V K SL
Sbjct: 367 EPAEYRKMFDR-LSVFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SL 416
Query: 838 NDGHL------IHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAA 891
+ I ++ L + + + A+ H I+
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYAL------------HRSIV-------------- 450
Query: 892 QEGHEDCVRLLLHYGAD---PKHSD-----HCGRNAFRVAAKSGHETVLRLLKQYADDSE 943
D + + +D P + D H G + + T+ R++ + D
Sbjct: 451 -----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMV--FLDFR- 501
Query: 944 YFV-----HYYYYYNSAKSGHETVLRLLKQYADDI 973
F+ H +N++ S T+ + LK Y I
Sbjct: 502 -FLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYI 534
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 5e-11
Identities = 108/697 (15%), Positives = 203/697 (29%), Gaps = 228/697 (32%)
Query: 283 ISNGLI---ILREIKDIPGTLNGLYLWLSQRLLSTKQFLKT-KEVSDTPCSD-TPVSRIT 337
+S+G + +L +P + SQ L +QF K E ++ +D P +
Sbjct: 11 LSHGSLEHVLL-----VP---TASFFIASQ--LQ-EQFNKILPEPTEGFAADDEPTT--- 56
Query: 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
L+ FL +L LN F + L
Sbjct: 57 -----------------PAELVGKFLGYVSSLVEPSKVGQFDQVLN-LCLTEFEN--CYL 96
Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL 457
G +I H+ KLL ++ + + + + A
Sbjct: 97 --EGNDI------------------HALAAKLLQENDTTLVKTKELIKNYITARIMAKR- 135
Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS------SILEY-D- 509
P D + +AL + G+A +V+ + +Y +
Sbjct: 136 -------PF----------------DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 510 -ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG 568
D+ Y +V L++ A+ E + + A +
Sbjct: 173 LRDL--------------------YQTYHVLVGDLIKFSAETLSE----LIRTTLDAEKV 208
Query: 569 HRDVCEIL--LENEA---DQDHIDKSGRT-PLWAAASMGH--ASCVALLLFWGAYVDTID 620
IL LEN + D+D++ + PL + H + L G +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL- 267
Query: 621 AEGRTVLS---VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYA 677
+G T S V A +A S R L +
Sbjct: 268 -KGATGHSQGLVTAV------------------AIAETDSWESFFVSVRKAITV--LFFI 306
Query: 678 AIEGHEEVCRALLEAGAKVDQVDNDGRAP-LILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
+ +E L D ++N+ P +L+ + V+ ++ + N
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK----TNSHLPA 362
Query: 737 GRTALRVNMKNVTKLSFWYLLIQPLLNIILS----SLFPLTVEDLFTKFSTTNPHISRQE 792
G+ + +++ N K N+++S SL+ L + L + + SR
Sbjct: 363 GK-QVEISLVNGAK------------NLVVSGPPQSLYGLNLT-LRKAKAPSGLDQSRIP 408
Query: 793 YKKRLHILRKIISIANNEHIILFHHSF--------SEWLLDVKHCTKRYLCSLNDGHLIH 844
+ + RK+ F + F S L+ + L + + +
Sbjct: 409 FSE-----RKLK----------FSNRFLPVASPFHSHLLVPASDLINKDL--VKNNVSFN 451
Query: 845 AVDLS---------QRRQTSSSSAVPSATDE-----------HFSRDTHMRIIL-----G 879
A D+ + S S D + TH IL G
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH---ILDFGPGG 508
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCG 916
+S +G ++ ++G VR+++ D D G
Sbjct: 509 ASGLG-VLTHRNKDGT--GVRVIVAGTLDINPDDDYG 542
Score = 61.2 bits (148), Expect = 2e-09
Identities = 114/686 (16%), Positives = 201/686 (29%), Gaps = 226/686 (32%)
Query: 68 QQHNLRKKLLAY-HFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKAL 126
++ R L++ + T S Q L EQF+ +E F+ E + L
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 127 LKS-----DQLLQDS-----DEVFKKAL------ILPLAQIKHPKTSYFILVDSIDETHV 170
+ L++ S D+V L L I H L+ D T V
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-H--ALAAKLLQENDTTLV 117
Query: 171 TNKKI---YSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLG-------FH 220
K++ Y +A LF V + + +F G F
Sbjct: 118 KTKELIKNY--ITARIMAKRPFDKKS--NS--ALFRAVGEGNAQLVAIFGGQGNTDDYF- 170
Query: 221 KLSLDDLRK-----SHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLY 275
++LR ++ D L++ + AE L++L +
Sbjct: 171 ----EELRDLYQTYHVLVGD-----LIKFS-------------AETLSELIRTTLDAEKV 208
Query: 276 LERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSD----T 331
+ L+ + WL + S+TP D
Sbjct: 209 FTQGLN---------------------ILEWL-------------ENPSNTPDKDYLLSI 234
Query: 332 PVS--RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDL---ELVDKHGQTALNVAA 386
P+S I + Q L ++ + + L EL + + A +
Sbjct: 235 PISCPLIGVI----Q--------------LAHYVVTAKLLGFTPGELRS-YLKGATGHS- 274
Query: 387 HQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRT 446
QG V AV I A + W + + +L G V C + T
Sbjct: 275 -QGLVTAVAI---AETD-------SWESFFVSV----RKAITVLFFIG--VRCYEAYPNT 317
Query: 447 ALRAAAWGGHLEVTI-VLGPLCVVKLL---------------LAAGAHVNAADSEGRTAL 490
+L + LE V P+ + L L AG V + G L
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 491 IASAYMGHAD----IVSSILEYDA----DINQQDNDGRTA------LSVSALCVP--SS- 533
+ S G + ++ + A D ++ R L V++ P S
Sbjct: 378 VVS---GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS---PFHSHL 431
Query: 534 --DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH--RDVCEILLENEADQDHIDKS 589
+ L++ + +D + + ++ D+ L + +D
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKD------IQIPVYDTFDGSDLRV--LSGSISERIVDCI 483
Query: 590 GRTPL-WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD-RG- 646
R P+ W + A+ + L F G S G + ++ D G
Sbjct: 484 IRLPVKWETTTQFKATHI--LDF-----------GPGGAS-----GLGVLTHRNKDGTGV 525
Query: 647 -MILGCLAGGRQTGSLDEQHRDNCGW 671
+I+ G+LD D+ G+
Sbjct: 526 RVIVA--------GTLDINPDDDYGF 543
Score = 41.2 bits (96), Expect = 0.002
Identities = 69/458 (15%), Positives = 126/458 (27%), Gaps = 176/458 (38%)
Query: 522 ALSVSALCVPSSDGYAKVVSILLEKGAKVDHE-------DREGMTPL-LVAAFEGHRDVC 573
+L L VP++ + S L E+ K+ E D E TP LV F G+
Sbjct: 15 SLEHVLL-VPTASFFI--ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY---- 67
Query: 574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
+ + + + G V L + E L +
Sbjct: 68 ---VSSLVEPSKV--------------GQFDQVLNLCLT-------EFE-NCYL-----E 97
Query: 634 GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG 693
GN D+ LA L +++ + +E+ + + A
Sbjct: 98 GN-DI-----------HALAA-----KLLQEND----------TTLVKTKELIKNYITAR 130
Query: 694 AKVDQ-VDNDGRAPLILAAQDGHYHLVEMF-----LEQY--EANVNQKSHDGRTALRVNM 745
+ D + L A +G+ LV +F + Y E LR
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-------------LR--- 174
Query: 746 KNVTKLSFW--Y-LLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRK 802
+ Y +L+ L+ +L L + + + + L+IL
Sbjct: 175 ------DLYQTYHVLVGDLIKFSAETLSEL----------IRTTLDAEKVFTQGLNIL-- 216
Query: 803 IISIANNEHIILFHHSFSEWLLDVKHC-TKRYLC----SLNDGHLIHAVDLSQRRQTSSS 857
EWL + + K YL S LI + L+ T+
Sbjct: 217 ------------------EWLENPSNTPDKDYLLSIPISCP---LIGVIQLAHYVVTAKL 255
Query: 858 SAV-PSATDEHFSRDTHMRIILGSSKVGEKISIAA-----------QEGHEDCVRLLLHY 905
P + G++ + + A + +L
Sbjct: 256 LGFTPGELRSYLK---------GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 906 GADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSE 943
G C A+ + +L+ +++E
Sbjct: 307 GV------RC-YEAYPNTSLP-----PSILEDSLENNE 332
Score = 37.0 bits (85), Expect = 0.044
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 50/117 (42%)
Query: 894 GH-----------------EDCVRLL-----LHYGADPKHSDHCGR--------NAFRVA 923
GH E V ++ A P+ D GR N RVA
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR--DELGRSNYGMIAINPGRVA 1818
Query: 924 AKSGHETVLRLLKQYADDSEYFVHYYYY----YNSAK-----SGH----ETVLRLLK 967
A E + ++++ + + V YN +G +TV +L
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLV-----EIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 65.3 bits (159), Expect = 5e-11
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 341 SKNQSVLHKLCAENNINLLKTFLKSC---EALDLELVDKHGQTALNVA---AHQGFVDAV 394
+ Q + +C + +++L+ F + L + L++A A+Q + V
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190
Query: 395 QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454
+++ G +++ +G T L A+ +KLLL+ A V + G TAL A
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
Query: 455 GHLEVTIVL 463
H E +L
Sbjct: 251 HHKECEELL 259
Score = 64.5 bits (157), Expect = 7e-11
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
L ++ ++ +V +++ G +D + +G T L AA D
Sbjct: 165 PDAQAPEELVLHLA--VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 222
Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
++LL+ A ++++G T L A H C LL
Sbjct: 223 LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 62.2 bits (151), Expect = 4e-10
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 18/144 (12%)
Query: 457 LEVTIVLGPLCVVKLLLAAGAHVNA------ADSEGRTAL---IASAYMGHADIVSSILE 507
L I L V A G A + L + A +V I++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 508 YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE 567
++ + DG TAL +AL + +LL+ A V + G T L +A +
Sbjct: 196 NGGHLDAKAADGNTALHYAALY-----NQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
Query: 568 GHRDVCEILLENEADQ----DHID 587
H++ E+L + +A H+D
Sbjct: 251 HHKECEELLEQAQAGTFAFPLHVD 274
Score = 60.7 bits (147), Expect = 1e-09
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 552 HEDREGMTPLLVAAFEGHRD---VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
L +A ++ + + +++N D G T L AA C+ L
Sbjct: 166 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 225
Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
LL A V T++ G T L +A + + + L
Sbjct: 226 LLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 59.1 bits (143), Expect = 4e-09
Identities = 31/151 (20%), Positives = 48/151 (31%), Gaps = 23/151 (15%)
Query: 594 LWAAASMGHASCVALLLFWGAYVD------TIDAEGRTVLSVAAA---QGNIDVVNQLLD 644
LW A V G A VL +A Q ++ +V+ ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII- 194
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
Q G + G T LHYAA+ + + LL+ A V V+ G
Sbjct: 195 ------------QNGG-HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 241
Query: 705 APLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
L +A + H E+ + H
Sbjct: 242 TALDIARKKHHKECEELLEQAQAGTFAFPLH 272
Score = 56.4 bits (136), Expect = 3e-08
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCS------DMGGRTALRAAAWGGHLEVTIVLGPLCV 468
L +A V +G D L A + L +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ------ASLPL 189
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
V ++ G H++A ++G TAL +A D + +L+ A + + G TAL ++
Sbjct: 190 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 48.0 bits (114), Expect = 1e-05
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEAL-----DLELVDKHGQTALNVAAHQGFVDAV 394
+ + VLH N + L + + L+ G TAL+ AA D +
Sbjct: 168 QAPEELVLHLAVKVAN----QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 223
Query: 395 QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
++LL+ A + + G T L A H +LL Q+ A
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
Score = 44.5 bits (105), Expect = 1e-04
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS-EYFVH 947
AA DC++LLL A + G A +A K H+ LL+Q + + +H
Sbjct: 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272
Query: 948 YYY 950
Y
Sbjct: 273 VDY 275
Score = 38.7 bits (90), Expect = 0.008
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 700 DNDGRAPLILA---AQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
L LA A LV+ F+ Q +++ K+ DG TAL
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVD-FIIQNGGHLDAKAADGNTAL 211
Score = 36.8 bits (85), Expect = 0.036
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
A + V ++ G G A AA L+LL +
Sbjct: 181 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 47.5 bits (112), Expect = 1e-05
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 18/191 (9%)
Query: 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ 69
K+ RE +L L + + + A ++G PG+GKT +++ +
Sbjct: 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKL--------WELY 68
Query: 70 HNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVE---DESIKAL 126
+ Y Y T + +SL F E + +VE + +
Sbjct: 69 KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 128
Query: 127 LKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIAD 186
L D + ++ + L K +++ V + + S
Sbjct: 129 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVI-------VGHNDAVLNNLDPSTRG 181
Query: 187 LLARNHHLFPP 197
++ + F P
Sbjct: 182 IMGKYVIRFSP 192
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 40.0 bits (93), Expect = 0.003
Identities = 32/194 (16%), Positives = 70/194 (36%), Gaps = 23/194 (11%)
Query: 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ 69
+ RE K+ L + NN I G G+GKT + K ++ S +
Sbjct: 20 DELPHREDQIRKIASILAPLYREEKPNN--IFIYGLTGTGKTAVVKFVL------SKLHK 71
Query: 70 HNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDES------I 123
L K Y + D + + ++SL + + +E + +V+ +
Sbjct: 72 KFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVV 131
Query: 124 KALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCS 183
L + D ++ ++ L +++ K S+ + + + + + ++ S
Sbjct: 132 IVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSS----- 186
Query: 184 IADLLARNHHLFPP 197
L+ +FPP
Sbjct: 187 ----LSEEEIIFPP 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 39.5 bits (91), Expect = 0.004
Identities = 11/128 (8%), Positives = 28/128 (21%), Gaps = 8/128 (6%)
Query: 14 CREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLR 73
+ F ++ + S I S K L +++ + S + L
Sbjct: 24 SQVEDFTRIFLPIYDSLMSSQNKL--FYITNADDSTKFQLVNDVM--DELITSSARKELP 79
Query: 74 KKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLL 133
+ + + + S + + + K + L
Sbjct: 80 IFDYIHIDALELA----GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTL 135
Query: 134 QDSDEVFK 141
Sbjct: 136 ILIQNPEN 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 39.4 bits (91), Expect = 0.005
Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ 69
K+ RE + ++ + L +G G+GKT + K +F E +
Sbjct: 20 KEIPFREDILRDAAIAIRYFVKNEVKFS--NLFLGLTGTGKTFVSKY-IFNEIEEVKKED 76
Query: 70 HNLRKKLLAYHFCQSYDLATFSVQNFI------QSLVEQFSSSESPFSEAFSTIVEDESI 123
+ AY C+ +V + + S+ + + + + +I
Sbjct: 77 EEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAI 136
Query: 124 KALLKSDQLLQDSD 137
L + D L++
Sbjct: 137 IYLDEVDTLVKRRG 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 36.2 bits (83), Expect = 0.025
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
LI G PG+GKT++ + I
Sbjct: 14 LITGTPGTGKTSMAEMIA 31
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 36.2 bits (83), Expect = 0.026
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD 86
L+ G PG GKTTL KE+ A S + N+ YD
Sbjct: 15 LLTGTPGVGKTTLGKEL----ASKSGLKYINVGDLAREEQLYDGYD 56
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 35.8 bits (82), Expect = 0.028
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
+I G PG GKTTL K+IV
Sbjct: 4 IITGEPGVGKTTLVKKIV 21
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 35.4 bits (82), Expect = 0.042
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 36 NNGGALII---GGPGSGKTTLCKEIV 58
G L++ G SGKTTL ++
Sbjct: 18 KTAGRLVLGIDGLSRSGKTTLANQLS 43
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 35.1 bits (81), Expect = 0.058
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 41 LIIGGPGSGKTTLCKEIVFPS 61
L IG PGSGK+T +E + +
Sbjct: 6 LTIGCPGSGKSTWAREFIAKN 26
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 34.8 bits (81), Expect = 0.077
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 41 LIIGGPGSGKTTLC--------KEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD-----L 87
+ G SGKTTL K++ + E FS + R +A + +
Sbjct: 24 QVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPE---RLVQMAETRGLNPEEALSRF 80
Query: 88 ATFSVQNF--IQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQ 131
F+ +F + ++ + F+ +V D SI A ++++
Sbjct: 81 ILFTPSDFKEQRRVIGS---LKKTVDSNFALVVVD-SITAHYRAEE 122
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 35.4 bits (81), Expect = 0.092
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 31 NSKPGNNGGALIIGGPGSGKTTLCKEIV 58
N I+ PG+GK+ K ++
Sbjct: 29 RGGDRTNSNWTILAKPGAGKSFTAKMLL 56
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 35.1 bits (80), Expect = 0.10
Identities = 46/318 (14%), Positives = 90/318 (28%), Gaps = 51/318 (16%)
Query: 3 TETPGQSKKFFC-REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61
P ++ RE KL LE+ L++G GK++L +
Sbjct: 4 DLRPKTRREDIFDREEESRKLEESLENYPL--------TLLLGIRRVGKSSLLRAF---- 51
Query: 62 AESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDE 121
L ++ C+ +L + L+++ S+ SPF + S
Sbjct: 52 ----------LNERPGILIDCR--ELYAERGHITREELIKELQSTISPFQKFQSKFKISL 99
Query: 122 SIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKAT 181
++K L + L EVF++ L + + + D +
Sbjct: 100 NLKFLTLEPRKL-SLREVFRE-----LNDLGEELGEFIVAFDEAQYLRFYGSRGGK---- 149
Query: 182 CSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYIL 241
+ L A + P + S + F L + D R + ++
Sbjct: 150 -ELLALFAYAYDSLPNLKIILTG------SEVGLLHDF--LKITDYESPLYGRIAGEVLV 200
Query: 242 LRLASEESL-------RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIK 294
+ S+ R + + +G +L R +K
Sbjct: 201 KPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMK 260
Query: 295 DIPGTLNGLYLWLSQRLL 312
GL + + L
Sbjct: 261 RTLEVAKGLIMGELEELR 278
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 34.3 bits (78), Expect = 0.17
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 39 GALIIGGPGSGKTTLCKEI 57
+ +G GSGKTTL E
Sbjct: 16 IVVFVGTAGSGKTTLTGEF 34
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 34.1 bits (78), Expect = 0.22
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 41 LIIGGPGSGKTTLCKEIVF 59
L+ G G+GKT + ++
Sbjct: 43 LVSGTSGTGKTLFSIQFLY 61
Score = 30.7 bits (69), Expect = 3.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 41 LIIGGPGSGKTTLC 54
L G G+GKT L
Sbjct: 285 LATGATGTGKTLLV 298
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 33.9 bits (77), Expect = 0.22
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 41 LIIGGPGSGKTTLCKEIVFPS 61
L IG PGSGK+T +E + +
Sbjct: 6 LTIGCPGSGKSTWAREFIAKN 26
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 32.7 bits (74), Expect = 0.27
Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 11/134 (8%)
Query: 42 IIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVE 101
I+G SGKTTL ++ ++ LR ++ H +++ ++
Sbjct: 7 IVGTSDSGKTTLITRMM------PILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSG 60
Query: 102 QFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFIL 161
SP AF V +E L D + + + + ++ + ++
Sbjct: 61 ADVVIASPVKLAFIRRVSEEEGNDL---DWIYERYLSDYDLVITEGFSKAGKDR--IVVV 115
Query: 162 VDSIDETHVTNKKI 175
+ H +I
Sbjct: 116 KKPEEVEHFRQGRI 129
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 33.9 bits (78), Expect = 0.28
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 36 NNGGALIIGGPGSGKTTLCKEIV 58
+ ++ GGPG+GK+T K +
Sbjct: 203 GHRLVVLTGGPGTGKSTTTKAVA 225
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.29
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 929 ETVLRL---LKQYADDS 942
+ + +L LK YADDS
Sbjct: 20 QALKKLQASLKLYADDS 36
Score = 31.1 bits (69), Expect = 0.91
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 960 ETVLRL---LKQYADD-IPVVS 977
+ + +L LK YADD P ++
Sbjct: 20 QALKKLQASLKLYADDSAPALA 41
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 33.1 bits (76), Expect = 0.30
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 41 LIIGGPGSGKTTLC 54
+ G PG+GKT
Sbjct: 27 ALTGEPGTGKTIFS 40
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 33.0 bits (75), Expect = 0.31
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
+I G G GK+T CK +
Sbjct: 6 IITGPAGVGKSTTCKRLA 23
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 33.1 bits (76), Expect = 0.34
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 41 LIIGGPGSGKTTLC 54
L+ GGPG+GKT
Sbjct: 27 LLSGGPGTGKTIFS 40
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 33.0 bits (76), Expect = 0.35
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
I GG SGKTTL + +
Sbjct: 10 GIAGGTASGKTTLAQALA 27
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 32.9 bits (75), Expect = 0.35
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAES--------SFSQQHN-LRKKLLAYHFCQSYDLATFS 91
L+ GG G+GKTT + ++ AE + ++ LR+++ ++ + D +
Sbjct: 34 LLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGW----DFEKYE 89
Query: 92 VQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLK 128
+ I +V+ SS SE + + ++ L+
Sbjct: 90 KEGKIA-IVDGVSSVVGLPSEEKFVLEDRFNVDNFLR 125
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 32.5 bits (74), Expect = 0.39
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 42 IIGGPGSGKTTLCKEIV 58
I G SGKTTL K +
Sbjct: 26 ISGVTNSGKTTLAKNLQ 42
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 32.3 bits (73), Expect = 0.41
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
++ G PG G TT + +
Sbjct: 7 VVTGVPGVGSTTSSQLAM 24
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 33.5 bits (76), Expect = 0.41
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 24 HCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLA 78
+ + I G G+G TTL K I+ + L A
Sbjct: 32 NAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFII-----EALISTGETGIILAA 81
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 32.0 bits (72), Expect = 0.53
Identities = 28/153 (18%), Positives = 45/153 (29%), Gaps = 28/153 (18%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS--------- 91
+ G PG GKTTL + S +++ +D+ T S
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 92 -------------------VQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQL 132
+ +F Q + +++ V DE K L S
Sbjct: 65 GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124
Query: 133 LQDSDEVFKKALILPLAQIKHPKTSYFILVDSI 165
+Q + + L I PK LV+ I
Sbjct: 125 IQAVRQTLSTPGTIILGTIPVPKGKPLALVEEI 157
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 32.4 bits (74), Expect = 0.64
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 38 GGALIIGGPGSGKTTL 53
GG L+ G G+GK+T
Sbjct: 46 GGVLVFGDRGTGKSTA 61
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 32.0 bits (73), Expect = 0.65
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 42 IIGGPGSGKTTLCKEIV 58
+ G PGSGK+TL +
Sbjct: 27 LSGAPGSGKSTLSNPLA 43
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 32.4 bits (73), Expect = 0.67
Identities = 32/249 (12%), Positives = 76/249 (30%), Gaps = 46/249 (18%)
Query: 3 TETPGQS-KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS 61
+P + K FF RE K + L+ L++G +GK+++ K
Sbjct: 5 DTSPKDNRKDFFDRE----KEIEKLKGLRAP------ITLVLGLRRTGKSSIIKIG---- 50
Query: 62 AESSFSQQHNLRKKLLAYHFC---QSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIV 118
+ + L Y + + + S ++F+ L ++ + +
Sbjct: 51 ----------INELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALK 100
Query: 119 EDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSD 178
+ I + + + + + + L + I+V +DE K
Sbjct: 101 NIQGIVIMGNEIKF--NWNRKDRLSFANLLESFEQASKDNVIIV--LDEAQELVKLRGV- 155
Query: 179 KATCSIADLLARNHHLFPPWLFLFCTVRR-------QSKSIKKMFLG--FHKLSLDDLRK 229
++ LA + F+ + + + G F + L +
Sbjct: 156 ----NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSR 211
Query: 230 SHVIRDMQQ 238
I +++
Sbjct: 212 EEAIEFLRR 220
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 32.1 bits (73), Expect = 0.71
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
+ GG SGK+T+C++I+
Sbjct: 29 GVSGGTASGKSTVCEKIM 46
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 32.8 bits (75), Expect = 0.72
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 39 GALIIGGPGSGKTTLCKEI 57
G L+ G PG+GKT + + +
Sbjct: 240 GILLYGPPGTGKTLIARAV 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 31.8 bits (73), Expect = 0.82
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 36 NNGGALIIGGP-GSGKTTLCKEI 57
NN L+I GP G GK TL K++
Sbjct: 21 NNIYPLVICGPSGVGKGTLIKKL 43
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 31.7 bits (72), Expect = 0.82
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
+ GG SGK+++C +IV
Sbjct: 26 GVSGGTASGKSSVCAKIV 43
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 31.6 bits (71), Expect = 0.89
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 40 ALIIGGPGSGKTTLCKEIV 58
++ G PG GK+T+ ++
Sbjct: 4 GIVTGIPGVGKSTVLAKVK 22
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 31.4 bits (72), Expect = 0.92
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
++GGPG+GK T C+++V
Sbjct: 19 FVLGGPGAGKGTQCEKLV 36
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 31.8 bits (72), Expect = 0.93
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
++ G PG GK+T K +
Sbjct: 8 ILTGLPGVGKSTFSKNLA 25
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 31.4 bits (72), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
++GGPG+GK T C IV
Sbjct: 7 FVLGGPGAGKGTQCARIV 24
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 1.1
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 468 VVKLLLAAGAHVNAADS---EGRTALIASAYMGHA 499
V++ LL GA V S + T S Y +
Sbjct: 493 VLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYG 527
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 31.2 bits (70), Expect = 1.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 41 LIIGGPGSGKTTLCKEI 57
L+ G PGSGK+T+ + +
Sbjct: 13 LLSGHPGSGKSTIAEAL 29
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein
family; HET: BMA; 1.60A {Salmonella typhimurium} PDB:
2afa_A 2rgk_A*
Length = 421
Score = 31.7 bits (71), Expect = 1.1
Identities = 31/159 (19%), Positives = 47/159 (29%), Gaps = 21/159 (13%)
Query: 582 DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTI------------DAEGRTVLSV 629
++ I + T LW A M H VA + D + D + +
Sbjct: 38 NKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYAC 97
Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
QG +D Q L A TG + L IE E+ +
Sbjct: 98 VNDQGVVDASKQGYQHFFALLGAASAVTTG--------HPEARKLLDYTIEVIEKYFWSE 149
Query: 690 LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEA 728
E ++ D + + H VE FL Y+
Sbjct: 150 -EEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDV 187
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 31.0 bits (71), Expect = 1.1
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
++GGPGSGK T C++IV
Sbjct: 13 FVVGGPGSGKGTQCEKIV 30
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 31.0 bits (71), Expect = 1.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 41 LIIGGPGSGKTTLCKEIV 58
++GGPGSGK T C IV
Sbjct: 10 FVLGGPGSGKGTQCANIV 27
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 31.6 bits (71), Expect = 1.3
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
+ + R PL + + + E + + + + T ++ S+G S
Sbjct: 474 REGGDQRHSFGPLDYESLQQELALKETVW-KKVSPESNEDISTTVVYRMESLGEKS 528
Score = 30.1 bits (67), Expect = 4.1
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG---HYH 717
PL Y +++ + + + + ++ + G H+H
Sbjct: 484 GPLDYESLQQELALKETVWK-KVSPESNEDISTTVVYRMESLGEKSHHH 531
Score = 28.9 bits (64), Expect = 9.8
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 413 TPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456
PL S A+ + + ++ T + G
Sbjct: 484 GPLDYESLQQELALKETVW-KKVSPESNEDISTTVVYRMESLGE 526
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 31.7 bits (71), Expect = 1.3
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIV 58
RE +L L + +N AL+ G G+GKT + + ++
Sbjct: 19 DVLPHREAELRRLAEVLAPALRGEKPSN--ALLYGLTGTGKTAVARLVL 65
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase;
HET: AMP; 2.3A {Homo sapiens}
Length = 199
Score = 31.0 bits (71), Expect = 1.3
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 42 IIGGPGSGKTTLCKEIV 58
IIGGPGSGK T C+++V
Sbjct: 17 IIGGPGSGKGTQCEKLV 33
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 31.9 bits (72), Expect = 1.3
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIV 58
+ + RE+ +++ L+ + + G GSGK+ + + +
Sbjct: 126 KQMTCYIREYHVDRVIKKLDEMCDLDSFF---LFLHGRAGSGKSVIASQAL 173
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 31.4 bits (72), Expect = 1.6
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
A +LL + GA V +D A + +V G
Sbjct: 23 AAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSH 64
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 30.6 bits (70), Expect = 1.7
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 28 SKTNSKPGNNGGALIIGGP-GSGKTTLCKEI 57
+ + L++ GP G GK TL K++
Sbjct: 2 AHHHHHHMARIPPLVVCGPSGVGKGTLIKKV 32
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.3 bits (71), Expect = 1.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 41 LIIGGPGSGKTTL 53
+++G SGKTT
Sbjct: 264 IVVGETASGKTTT 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 30.7 bits (69), Expect = 1.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 41 LIIGGPGSGKTTLCKEI 57
++ G P +GKTTL + +
Sbjct: 9 IVTGHPATGKTTLSQAL 25
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 30.2 bits (68), Expect = 1.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 41 LIIGGPGSGKTTLCKEI 57
LI G PGSGK+ K +
Sbjct: 5 LITGMPGSGKSEFAKLL 21
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.3 bits (71), Expect = 1.9
Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 3 TETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA 62
P + F R+ KLVH ++ K G G I G G GK+ L E V
Sbjct: 117 GGVPQRPVIFVTRK----KLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAV---- 168
Query: 63 ESSFSQQHNLRKKLL--AYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVED 120
+ H+L + H+ + +Q+L + ES I E
Sbjct: 169 -----RDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA 223
Query: 121 ESIKALLKSDQ 131
+ +L +
Sbjct: 224 KDRLRVLMLRK 234
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.9 bits (69), Expect = 1.9
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 41 LIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT-FSVQNFIQSL 99
L+ G PG GKT V + + + +AT +V+ L
Sbjct: 165 LVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFL 224
Query: 100 VEQFSSSESPFSEAFSTIVEDE 121
+ + F + DE
Sbjct: 225 MNYGKGARCQ----FKRLFIDE 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 30.6 bits (70), Expect = 2.0
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 27 ESKTNSKPGNNGGALIIGGP-GSGKTTLCKEIV 58
+ +P G +++ GP GK+T+ + +
Sbjct: 9 KPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLR 41
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 31.2 bits (70), Expect = 2.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 41 LIIGGPGSGKTTLC 54
++G GSGKT L
Sbjct: 5 FLVGRSGSGKTKLI 18
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 30.5 bits (68), Expect = 2.7
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 566 FEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCV 606
F HRD E L E +GR P A +GH
Sbjct: 73 FYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPF 113
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.4 bits (68), Expect = 2.7
Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 42 IIGGPGSGKTTLCKEIVFPSAESSFSQ---QHNLRKKLLAYHFCQSY 85
++ G+ + P + +Q + +H +
Sbjct: 124 VVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 30.2 bits (67), Expect = 2.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 41 LIIGGPGSGKTTLCKEI 57
L+ G G+GKTT+ +
Sbjct: 36 LLGGQSGAGKTTIHRIK 52
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 29.9 bits (68), Expect = 3.0
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 36 NNGGALIIGGP-GSGKTTLCKEIV 58
+ G L++ P G GKTT+ +++
Sbjct: 25 SVGVILVLSSPSGCGKTTVANKLL 48
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 30.2 bits (68), Expect = 3.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 39 GALIIGGPGSGKTTLCK 55
I GG G GK+ C+
Sbjct: 38 ILGIWGGKGQGKSFQCE 54
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 30.2 bits (69), Expect = 3.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 42 IIGGPGSGKTTL 53
++G GSGK+TL
Sbjct: 374 VLGETGSGKSTL 385
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 29.8 bits (68), Expect = 3.5
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 36 NNGGALIIGGP-GSGKTTLCKEIV 58
N II P G+GKT+L + +V
Sbjct: 5 NKANLFIISAPSGAGKTSLVRALV 28
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 30.0 bits (68), Expect = 3.5
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
+GGR + A G L + ++ G H ++E + A
Sbjct: 93 LGGRLIMHGLAQGAFS-------RLNLRGAII-EGGHFGLQENEEKAARWQHD 137
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 29.2 bits (65), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 42 IIGGPGSGKTTLCKEIV 58
++G SGKTTL ++ V
Sbjct: 9 VVGYKHSGKTTLMEKWV 25
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 29.9 bits (68), Expect = 3.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 39 GALIIGGPGSGKTTLCKEI 57
GAL++G PG GKT L K +
Sbjct: 41 GALLLGPPGCGKTLLAKAV 59
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 30.0 bits (68), Expect = 4.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 41 LIIGGPGSGKTTL 53
++ GG GSGKTT
Sbjct: 175 IVCGGTGSGKTTY 187
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.6 bits (66), Expect = 4.3
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 42 IIGGPGSGKTTLCKEI 57
+ G G+G +T+
Sbjct: 10 VTGSSGAGTSTVKHTF 25
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 29.9 bits (67), Expect = 4.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 37 NGGALIIGGPGSGKTTL 53
L+ G G+GK+ L
Sbjct: 53 PRHLLVNGATGTGKSVL 69
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 29.6 bits (67), Expect = 5.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 41 LIIGGPGSGKTTL 53
++ G GSGKTTL
Sbjct: 179 VVAGETGSGKTTL 191
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET:
DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11
PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Length = 296
Score = 29.5 bits (67), Expect = 5.6
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 26 LESKTNSKPGNNGGALII--GGPGSGKTTLCKEIV 58
+ KT G GG +I+ G G GK+T ++
Sbjct: 25 INDKTL---GARGGEVIMVTSGSGMGKSTFVRQQA 56
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 29.1 bits (66), Expect = 5.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIV 58
+ L++ L+ + +G + +G PGSGK T +
Sbjct: 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLK 50
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 29.0 bits (66), Expect = 5.9
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 31 NSKPGNNGGALIIGGP-GSGKTTLCKEIV 58
++ G +++ GP G GK T+ + +
Sbjct: 1 SNAMTERGLLIVLSGPSGVGKGTVREAVF 29
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 29.2 bits (66), Expect = 5.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 39 GALIIGGPGSGKTTLCKEI 57
G L++G PG+GKT L K I
Sbjct: 47 GVLMVGPPGTGKTLLAKAI 65
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 29.0 bits (66), Expect = 5.9
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 41 LIIGGP-GSGKTTLCKEIV--FPSAESSFS 67
I+ P G+GK++L + ++ P ++ S
Sbjct: 19 YIVSAPSGAGKSSLIQALLKTQPLYDTQVS 48
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 29.2 bits (66), Expect = 6.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 39 GALIIGGPGSGKTTLCKEI 57
G L++G PG GKT L + +
Sbjct: 75 GVLLVGPPGVGKTHLARAV 93
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.6 bits (63), Expect = 6.5
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 41 LIIGGPGSGKTTLCKEI 57
++ GG +GK+ + + +
Sbjct: 7 ILNGGSSAGKSGIVRCL 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 29.1 bits (66), Expect = 6.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 39 GALIIGGPGSGKTTLCKEI 57
G L++G PG+GKT L K +
Sbjct: 46 GVLLVGPPGTGKTLLAKAV 64
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 28.6 bits (65), Expect = 6.7
Identities = 9/18 (50%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Query: 41 LIIGGP-GSGKTTLCKEI 57
++I GP G+GK+TL K++
Sbjct: 4 IVISGPSGTGKSTLLKKL 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 28.8 bits (65), Expect = 6.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 39 GALIIGGPGSGKTTLCKEI 57
G L++G PG GKT L + +
Sbjct: 51 GVLLVGPPGVGKTHLARAV 69
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 28.9 bits (64), Expect = 7.1
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 24 HCLESKTNSKPGNNGGALIIGGP-GSGKTTLCKEI 57
C T G ++I G GSGKTT
Sbjct: 6 SCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHF 40
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 29.0 bits (66), Expect = 7.2
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 468 VVKLLLAAGAHVNAAD-SEGRTALIASAYMGHADIVSS--ILEYDADI 512
+ K L GA + D ++ + + AD V+ I DI
Sbjct: 188 LCKKLNTEGAKLVVTDVNKAAVSAAVAEE--GADAVAPNAIYGVTCDI 233
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 28.6 bits (65), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 41 LIIGGP-GSGKTTLCKEIV 58
+++ GP G GK T+ K I
Sbjct: 9 IVLSGPSGVGKGTVRKRIF 27
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.7 bits (65), Expect = 7.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 42 IIGGPGSGKTTL 53
I+G GSGKT L
Sbjct: 35 IMGAIGSGKTLL 46
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 28.5 bits (63), Expect = 7.8
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 904 HYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVH-YYYYYNSAKSGHETV 962
H G+ + R +V + RLL++Y + H Y+ +Y +K
Sbjct: 75 HTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKN 134
Query: 963 LRLLKQY 969
+L +
Sbjct: 135 KTVLIEA 141
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.8 bits (65), Expect = 7.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 42 IIGGPGSGKTTL 53
+G GSGKT L
Sbjct: 43 FMGAIGSGKTLL 54
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for
structura genomics, protein structure initiative,
unknown function; 2.80A {Listeria innocua}
Length = 185
Score = 28.4 bits (63), Expect = 8.3
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 5/87 (5%)
Query: 79 YHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVE-----DESIKALLKSDQLL 133
H + + + +Q +F I+ + + S
Sbjct: 59 RHHKEIIQVIEVQILRTMQYFSLEFDQIILTKENIQRLILRTIQKNPLLFQVIFWSRAEN 118
Query: 134 QDSDEVFKKALILPLAQIKHPKTSYFI 160
D V + L + L + S F+
Sbjct: 119 IFIDVVSGEILRISLLKEVSFSDSKFM 145
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 28.9 bits (65), Expect = 8.5
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVK-----LLLAAGAHVNAADSEGRTALIASAYM 496
G +L AAA G + V P V + ++A +EGR + +M
Sbjct: 96 SGAGLSLLAAASGLPITRLAVFEPPYAVDDSRPPVPPDYQTRLDALLAEGRRGDAVTYFM 155
Query: 497 GHA 499
Sbjct: 156 TEG 158
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 28.3 bits (62), Expect = 8.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 42 IIGGPGSGKTTLCKEIV 58
G+GKTTL K+++
Sbjct: 11 FAAWSGTGKTTLLKKLI 27
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 28.7 bits (63), Expect = 9.3
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 28 SKTNSKPGNNGGALIIGGP-GSGKTTLCKEI 57
S + S G + I G +GK+T +
Sbjct: 14 SFSASSEGTRIKKISIEGNIAAGKSTFVNIL 44
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 28.2 bits (64), Expect = 9.3
Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Query: 41 LIIGGP-GSGKTTLCKEI 57
+++ GP G+GK+TL K++
Sbjct: 7 VVLSGPSGAGKSTLLKKL 24
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator;
synthase, TETR family; 1.6A {Lactococcus lactis subsp}
SCOP: a.4.1.9 a.121.1.1
Length = 195
Score = 28.3 bits (63), Expect = 9.7
Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 79 YHFCQSYDLATFSVQNFIQSLVEQFSSSESP---FSEAFSTIVED-ESIKALLKSDQLLQ 134
+F +L ++ +N L+ S + E+ + + D+ +
Sbjct: 52 NYFQNQEELLSWIFENDFAELINDNSDYYGWQNELLLLLRYLDENQIFYQKIFVIDKNFE 111
Query: 135 DSDEVFKKALI 145
+ + L+
Sbjct: 112 HFFLIQWENLL 122
>3kkc_A TETR family transcriptional regulator; APC20805, structural
genomics, PSI-2, protein structure initiative; 2.50A
{Streptococcus agalactiae 2603V}
Length = 177
Score = 28.2 bits (63), Expect = 9.8
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 9/91 (9%)
Query: 79 YHFCQSYDLATFSVQNFIQSLVEQFS--SSESPFSEAFSTIVED-ESIKALLKSD----- 130
H+ L ++ L +Q + E ++ +SI LL SD
Sbjct: 51 SHYESKEVLLKELCEDLFHHLFKQGRDVTFEEYLVHILKHFEQNQDSIATLLLSDDPYFL 110
Query: 131 -QLLQDSDEVFKKALILPLAQIKHPKTSYFI 160
+ + + L +
Sbjct: 111 LRFRSELEHDVYPRLREEYITKVDIPEDFLK 141
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 28.6 bits (65), Expect = 9.8
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 434 GADVNCSDMGGRT---ALRAAAWGGHLEVTI 461
G D+ ++ G+ +L A GG L V I
Sbjct: 189 GLDL-VLEVRGKEVEESLGLLAHGGRL-VYI 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,748,156
Number of extensions: 911253
Number of successful extensions: 6050
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3631
Number of HSP's successfully gapped: 793
Length of query: 978
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 875
Effective length of database: 3,825,930
Effective search space: 3347688750
Effective search space used: 3347688750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.0 bits)