BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy939
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 41/53 (77%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYN 59
GKV+GGT+V+NG+MY RG+ DYD++ G GW Y++VLP+F KSE NL+ +
Sbjct: 144 GKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNLELD 196
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 38/50 (76%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNL 56
GKV+GGT+VLNG+MY RG+ DYD++ G GW Y +VLP+F KSE NL
Sbjct: 144 GKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNL 193
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 39/49 (79%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D+D +E+LGA GW Y +VLPYF + EH+
Sbjct: 80 GKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHS 128
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 39/49 (79%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG S D+D +E+LGA GW Y +VLPY+ + EH+
Sbjct: 80 GKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHS 128
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 39/49 (79%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NGL+Y RG + D++ +E+LGA GW Y +VLPYF + EH+
Sbjct: 80 GKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHS 128
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 40/49 (81%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+
Sbjct: 80 GKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS 128
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 40/49 (81%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+
Sbjct: 80 GKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS 128
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 40/49 (81%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+
Sbjct: 80 GKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS 128
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 39/49 (79%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D++ +E+LGA GW Y +VLPYF + EH+
Sbjct: 80 GKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHS 128
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 39/49 (79%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG S D++ +E+LGA GW Y +VLPY+ + EH+
Sbjct: 80 GKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHS 128
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D+D + + GATGWG+ +VLPYF + E N
Sbjct: 81 GKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADVLPYFKRMEDN 129
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 39/49 (79%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D++ +E+LGA GW Y +VLPYF + EH+
Sbjct: 80 GKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVLPYFKRMEHS 128
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 54
GKV+GG++ +NG++Y RG + D+DE+E+ GA GW Y+ LPYF ++E+
Sbjct: 82 GKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAEN 129
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 54
GKV+GG++ +NG++Y RG + D+DE+E+ GA GW Y+ LPYF ++E+
Sbjct: 82 GKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAEN 129
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE 53
GKV+GG++ +NG++Y RG + D+DE+E GA GW Y+ LPYF K+E
Sbjct: 82 GKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQACLPYFRKAE 128
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + DYD + + GA GW Y +VLPYF + E++
Sbjct: 80 GKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYADVLPYFKRMENS 128
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 37/49 (75%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++
Sbjct: 80 GKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENS 128
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 37/49 (75%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++
Sbjct: 80 GKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENS 128
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 37/49 (75%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++
Sbjct: 80 GKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENS 128
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 37/49 (75%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++
Sbjct: 80 GKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENS 128
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 37/49 (75%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GKV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++
Sbjct: 80 GKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENS 128
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE 53
G+V+GG++ +NG++Y RG + DYDE+ + GA GW Y+ LPYF ++E
Sbjct: 82 GRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQECLPYFRRAE 128
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE-HNL 56
G+V GG++ LN ++Y RG + DY+ +++ GA GW Y + LPYF K++ H L
Sbjct: 125 GRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHEL 175
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE-HNLQYN 59
G+V GG++ LN ++Y RG + DY+ + + GA GW Y + LPYF K++ H L N
Sbjct: 130 GRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKAQKHELGAN 183
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE-HNLQYN 59
G+V GG++ LN ++Y RG + DY+ + + GA GW Y + LPYF K++ H L N
Sbjct: 127 GRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQRHELGAN 180
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA
PE=3 SV=1
Length = 555
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+DE+ KL G W Y N LPYF K+E
Sbjct: 82 GKGLGGSSLINGMCYIRGNAMDFDEWAKLPGLEDWNYLNCLPYFRKAE 129
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNYQSY 63
GK +GG++ +N ++Y RG DY +E+ G WG+K F K EHN +++ +Y
Sbjct: 79 GKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKRAFALFKKLEHNQRFDKSNY 135
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + K G W Y++VLPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAE 131
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + K G W Y++VLPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAE 131
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ DYD + KL G W Y + LPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNAMDYDNWAKLPGLENWTYLDCLPYFRKAE 131
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ DYD + KL G W Y + LPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSYLDCLPYFRKAE 131
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 54
GKV+GG++ +N +M+ RG +SDYDE+ W Y +VL YF + E+
Sbjct: 81 GKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIEN 128
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 54
GKV+GG++ +N +M+ RG +SDYDE+ W Y +VL YF + E+
Sbjct: 81 GKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIEN 128
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ DYD + KL G W Y + LPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWTYLDCLPYFRKAE 131
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
G+++GG + +N ++ RG SD+D + GA GW +++V YF++SE N
Sbjct: 81 GRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQKYFIRSEGN 129
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEY-EKLGATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ DYD + E+ G W Y + LPYF K+E
Sbjct: 85 GKGLGGSSLINGMCYIRGNALDYDGWAERKGLENWTYLDCLPYFRKAE 132
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ DYD + + G W Y + LPYF K+E
Sbjct: 86 GKGLGGSSLINGMCYIRGNAMDYDNWASMPGLEDWTYLDCLPYFRKAE 133
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ DYD + + G W Y + LPYF K+E
Sbjct: 86 GKGLGGSSLINGMCYIRGNAMDYDNWASMPGLEDWTYLDCLPYFRKAE 133
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ DYD + K G W Y + LPYF KSE
Sbjct: 86 GKGLGGSSLINGMCYIRGNALDYDHWAKQPGLEEWDYLSCLPYFKKSE 133
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 82 GKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 82 GKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + K G W Y + LPYF K+E
Sbjct: 84 GKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYHDCLPYFRKAE 131
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + K G W Y + LPYF K+E
Sbjct: 82 GKGLGGSSLINGMCYIRGNAMDFDNWAKAPGLEDWSYLDCLPYFRKAE 129
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 82 GKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 82 GKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 82 GKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=betA PE=3 SV=1
Length = 567
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 53
GK +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 82 GKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,963,425
Number of Sequences: 539616
Number of extensions: 903492
Number of successful extensions: 2189
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1944
Number of HSP's gapped (non-prelim): 148
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)