Query psy939
Match_columns 67
No_of_seqs 121 out of 1118
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:53:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 99.9 7.3E-23 1.6E-27 154.3 4.6 59 1-59 131-189 (623)
2 TIGR01810 betA choline dehydro 99.7 7.5E-19 1.6E-23 128.6 3.8 56 2-57 74-130 (532)
3 PRK02106 choline dehydrogenase 99.7 3E-18 6.5E-23 126.3 4.1 56 2-57 80-136 (560)
4 COG2303 BetA Choline dehydroge 99.7 3E-18 6.6E-23 127.0 4.2 56 2-57 79-135 (542)
5 PF00732 GMC_oxred_N: GMC oxid 99.7 7.9E-18 1.7E-22 113.9 3.2 58 2-59 72-130 (296)
6 PLN02785 Protein HOTHEAD 99.4 4.2E-14 9.1E-19 106.1 2.0 49 2-56 123-171 (587)
7 TIGR02462 pyranose_ox pyranose 96.6 0.001 2.2E-08 50.4 1.8 49 5-57 112-162 (544)
8 PRK04181 4-diphosphocytidyl-2- 63.5 3.3 7.2E-05 28.6 0.8 14 3-16 94-107 (257)
9 PRK14610 4-diphosphocytidyl-2- 62.6 3.5 7.6E-05 28.6 0.7 14 3-16 92-105 (283)
10 PF00288 GHMP_kinases_N: GHMP 62.0 4.4 9.5E-05 21.9 0.9 45 3-55 7-51 (67)
11 PRK14612 4-diphosphocytidyl-2- 60.9 4.3 9.3E-05 27.8 0.9 14 3-16 91-104 (276)
12 PRK14613 4-diphosphocytidyl-2- 58.1 4.6 9.9E-05 28.3 0.7 14 3-16 101-114 (297)
13 PRK05905 hypothetical protein; 56.8 4.4 9.6E-05 28.2 0.5 13 3-15 94-106 (258)
14 PRK14611 4-diphosphocytidyl-2- 56.8 5.5 0.00012 27.4 0.9 15 3-17 88-102 (275)
15 PRK14616 4-diphosphocytidyl-2- 56.0 5.6 0.00012 27.4 0.8 14 3-16 91-104 (287)
16 PRK14608 4-diphosphocytidyl-2- 55.8 5.4 0.00012 27.7 0.8 32 3-34 98-137 (290)
17 PRK00650 4-diphosphocytidyl-2- 54.5 5.5 0.00012 28.2 0.6 14 3-16 88-101 (288)
18 PRK03188 4-diphosphocytidyl-2- 51.6 7.1 0.00015 27.0 0.8 14 3-16 91-104 (300)
19 PRK00343 ipk 4-diphosphocytidy 49.4 7.7 0.00017 26.8 0.7 14 3-16 95-108 (271)
20 PRK14614 4-diphosphocytidyl-2- 47.9 8.6 0.00019 26.5 0.8 33 3-35 93-133 (280)
21 PRK01212 homoserine kinase; Pr 47.6 9.5 0.00021 26.2 0.9 14 3-16 89-102 (301)
22 PTZ00298 mevalonate kinase; Pr 47.4 9 0.0002 27.0 0.8 15 3-17 102-116 (328)
23 PRK00128 ipk 4-diphosphocytidy 46.1 9.8 0.00021 26.0 0.8 15 3-17 92-106 (286)
24 TIGR00191 thrB homoserine kina 45.5 11 0.00024 26.1 1.0 14 3-16 88-101 (302)
25 PRK14615 4-diphosphocytidyl-2- 45.1 10 0.00023 26.4 0.8 33 3-35 96-136 (296)
26 PRK02534 4-diphosphocytidyl-2- 41.6 13 0.00028 25.9 0.9 14 3-16 94-107 (312)
27 PRK14609 4-diphosphocytidyl-2- 41.3 13 0.00028 25.6 0.8 16 3-18 90-105 (269)
28 TIGR00154 ispE 4-diphosphocyti 40.9 14 0.00031 25.7 1.0 16 3-18 94-109 (293)
29 COG1947 IspE 4-diphosphocytidy 40.7 12 0.00027 26.7 0.7 20 3-23 93-112 (289)
30 PRK03926 mevalonate kinase; Pr 39.1 16 0.00034 25.1 0.9 14 3-16 83-96 (302)
31 PLN02451 homoserine kinase 36.6 18 0.00038 26.3 0.9 14 3-16 142-155 (370)
32 TIGR00549 mevalon_kin mevalona 32.4 23 0.0005 23.7 0.9 15 3-17 86-100 (273)
33 PTZ00299 homoserine kinase; Pr 31.9 23 0.0005 25.5 0.9 14 3-16 90-103 (336)
34 PRK01123 shikimate kinase; Pro 28.8 29 0.00062 23.9 0.9 14 3-16 83-96 (282)
35 PF13878 zf-C2H2_3: zinc-finge 25.2 40 0.00087 17.0 0.9 13 18-30 20-32 (41)
36 TIGR01920 Shik_kin_archae shik 23.8 41 0.0009 23.0 1.0 14 3-16 72-85 (261)
37 PTZ00204 hypothetical protein; 23.8 28 0.00061 21.6 0.1 27 17-44 36-63 (120)
38 COG2605 Predicted kinase relat 23.4 42 0.00091 24.6 1.0 29 2-30 96-129 (333)
39 PF12207 DUF3600: Domain of un 22.6 55 0.0012 21.7 1.3 13 43-55 87-99 (162)
40 PRK10759 lipoprotein; Provisio 21.2 58 0.0012 20.2 1.1 11 36-46 79-89 (106)
No 1
>KOG1238|consensus
Probab=99.87 E-value=7.3e-23 Score=154.30 Aligned_cols=59 Identities=42% Similarity=0.856 Sum_probs=55.8
Q ss_pred CccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhccCCC
Q psy939 1 MVKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYN 59 (67)
Q Consensus 1 ~~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~~~~ 59 (67)
.|.|||||||||||+||+|+|+||++.|||+|++.|++||+|++++|||+|+|+...|.
T Consensus 131 ~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~ 189 (623)
T KOG1238|consen 131 RCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPD 189 (623)
T ss_pred ceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCC
Confidence 47899999999999999999999999999999999999999999999999999886654
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.75 E-value=7.5e-19 Score=128.64 Aligned_cols=56 Identities=38% Similarity=0.856 Sum_probs=52.6
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhhccC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~-~g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
+.+++||+|||||+||+|+|+|+++.|||.|++ .|+++|+|++|+|||+|+|++..
T Consensus 74 ~~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~ 130 (532)
T TIGR01810 74 VGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFG 130 (532)
T ss_pred EeeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCC
Confidence 468999999999999999999999999999998 48999999999999999998865
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=99.72 E-value=3e-18 Score=126.25 Aligned_cols=56 Identities=43% Similarity=0.934 Sum_probs=52.8
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
+.+++||+|||||+||+|+|+|+++.|||.|+++ |+++|+|++|+|||+|+|++..
T Consensus 80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~ 136 (560)
T PRK02106 80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDG 136 (560)
T ss_pred eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCC
Confidence 4678999999999999999999999999999998 9999999999999999998863
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.72 E-value=3e-18 Score=127.04 Aligned_cols=56 Identities=43% Similarity=0.928 Sum_probs=52.6
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
+.++|||+|||||+||+|+|+|+++.|||.|++. |+++|+|++|+|||+|+|++..
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~ 135 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLG 135 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcC
Confidence 5689999999999999999999999999999987 8899999999999999998544
No 5
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.70 E-value=7.9e-18 Score=113.92 Aligned_cols=58 Identities=36% Similarity=0.731 Sum_probs=47.4
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccCCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN 59 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~~~ 59 (67)
+.+++||+|||||+||+|+++|+++.||+.|+.. |.++|+|++|.|||+++|+++.++
T Consensus 72 ~~~~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~ 130 (296)
T PF00732_consen 72 INWPRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS 130 (296)
T ss_dssp EEEEEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB
T ss_pred eeeecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc
Confidence 4577999999999999999999999999999998 889999999999999999776654
No 6
>PLN02785 Protein HOTHEAD
Probab=99.43 E-value=4.2e-14 Score=106.11 Aligned_cols=49 Identities=27% Similarity=0.406 Sum_probs=44.8
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhcc
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNL 56 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~ 56 (67)
+.++|||+|||||+||+|+|+|++++||++ .||+|+.+.|+|+++|+..
T Consensus 123 ~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~ 171 (587)
T PLN02785 123 VINARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQI 171 (587)
T ss_pred eeccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccc
Confidence 468999999999999999999999999963 6899999999999999864
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.65 E-value=0.001 Score=50.43 Aligned_cols=49 Identities=10% Similarity=-0.075 Sum_probs=40.0
Q ss_pred cccccccchhHhhcceeccCChhhHHHHHhcCCCCC--ChhhHHHHHHHhhhccC
Q psy939 5 FDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGW--GYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 5 ~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gW--sw~~~~p~f~k~e~~~~ 57 (67)
.|-|.|||+|.+=+....|-++++- .|. ..+| ++++|.|||.++|.+..
T Consensus 112 ar~R~vGGsS~hW~g~~~R~~p~~r-~g~---~~dWPI~y~eL~PyY~~Ae~~~g 162 (544)
T TIGR02462 112 AVTRGVGGMSTHWTCATPRFHREER-PKL---SDDAAEDDAEWDRLYTKAESLIG 162 (544)
T ss_pred heeeccCchhhhcCcccCCCCHHhc-cCC---CCCCCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999998642 122 2689 99999999999999744
No 8
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=63.53 E-value=3.3 Score=28.64 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=11.9
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++|||||+-
T Consensus 94 ~IP~gaGLGggSSd 107 (257)
T PRK04181 94 NIPTGAGLGGGSSD 107 (257)
T ss_pred CCCCcCcccccHHH
Confidence 47899999999975
No 9
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=62.60 E-value=3.5 Score=28.63 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=11.8
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++|||||+-
T Consensus 92 ~IP~~aGLGggSs~ 105 (283)
T PRK14610 92 NIPVSAGLAGGSAD 105 (283)
T ss_pred CCCCCCcCCccHHH
Confidence 57899999999874
No 10
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=62.03 E-value=4.4 Score=21.88 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=26.6
Q ss_pred cccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhc
Q psy939 3 KIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~ 55 (67)
.+|.|++||.|+++=..+. ....++-....+-+++...-.++|+.
T Consensus 7 ~iP~~~GLgSSaa~~~a~~--------~a~~~~~~~~~~~~~l~~~a~~~e~~ 51 (67)
T PF00288_consen 7 NIPPGSGLGSSAALAVALA--------AALNKLFGLPLSKEELAKLAQEAERY 51 (67)
T ss_dssp SSTTTSSSSHHHHHHHHHH--------HHHHHHTTTSSBHHHHHHHHHHHHHH
T ss_pred cCCCCCcccHHHHHHHHHH--------HHHHHHccccccHHHHHHHHHHHHHH
Confidence 5799999999998754432 11222222345556666666666643
No 11
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=60.92 E-value=4.3 Score=27.85 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=12.2
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++|||||+.
T Consensus 91 ~IP~~~GLGssSa~ 104 (276)
T PRK14612 91 RLPLAAGLGGGSSD 104 (276)
T ss_pred cCCCcCCCchHHHH
Confidence 57999999999975
No 12
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=58.08 E-value=4.6 Score=28.27 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.4
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++|||||+.
T Consensus 101 ~IP~~aGLGggSs~ 114 (297)
T PRK14613 101 RISPAGGLGGGSTN 114 (297)
T ss_pred CCCccCCccccHHH
Confidence 57899999999987
No 13
>PRK05905 hypothetical protein; Provisional
Probab=56.78 E-value=4.4 Score=28.19 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=11.2
Q ss_pred cccccccccchhH
Q psy939 3 KIFDGKVMGGTTV 15 (67)
Q Consensus 3 ~~~rGk~lGGsS~ 15 (67)
.+|.|.+|||||+
T Consensus 94 ~IP~~aGLGggSS 106 (258)
T PRK05905 94 RIPIGSGLGSGSS 106 (258)
T ss_pred CCCCcCCCCCCch
Confidence 4789999999986
No 14
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=56.77 E-value=5.5 Score=27.37 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=12.3
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|++|||||+.=
T Consensus 88 ~IP~~~GLGSSsA~a 102 (275)
T PRK14611 88 NIPVGAGLGGGSSNA 102 (275)
T ss_pred CCCCcCCccHHHHHH
Confidence 578999999998753
No 15
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=56.01 E-value=5.6 Score=27.45 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.2
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++|||||+.
T Consensus 91 ~IP~~~GLGssSA~ 104 (287)
T PRK14616 91 RVPFGAGLGGGSSD 104 (287)
T ss_pred CCCCcCCchHHHHH
Confidence 57899999999986
No 16
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=55.77 E-value=5.4 Score=27.72 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=21.4
Q ss_pred cccccccccchhHh--------hcceeccCChhhHHHHHh
Q psy939 3 KIFDGKVMGGTTVL--------NGLMYCRGDSSDYDEYEK 34 (67)
Q Consensus 3 ~~~rGk~lGGsS~i--------N~~~~~rg~~~d~d~Wa~ 34 (67)
.+|.|++|||||+. |.+.-..-++++.-+.+.
T Consensus 98 ~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~ 137 (290)
T PRK14608 98 NLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALAL 137 (290)
T ss_pred CCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 57899999999986 444333445556656655
No 17
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=54.50 E-value=5.5 Score=28.24 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=12.0
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|.+|||||+-
T Consensus 88 ~IP~gaGLGggSS~ 101 (288)
T PRK00650 88 QIPIGAGLAGGSSN 101 (288)
T ss_pred CCCCcCCcCcchhH
Confidence 57899999999874
No 18
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=51.55 E-value=7.1 Score=26.97 Aligned_cols=14 Identities=21% Similarity=0.007 Sum_probs=11.9
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++|||||+.
T Consensus 91 ~IP~~~GLGSSSA~ 104 (300)
T PRK03188 91 GIPVAGGMAGGSAD 104 (300)
T ss_pred CCcccCcchHHHHH
Confidence 57899999999874
No 19
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=49.44 E-value=7.7 Score=26.78 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=12.0
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|.+|||||+.
T Consensus 95 ~IP~gaGLGssSs~ 108 (271)
T PRK00343 95 RLPMGGGLGGGSSD 108 (271)
T ss_pred CCCCcCCCCcchHH
Confidence 57899999999875
No 20
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=47.90 E-value=8.6 Score=26.49 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=20.7
Q ss_pred cccccccccchhHh--------hcceeccCChhhHHHHHhc
Q psy939 3 KIFDGKVMGGTTVL--------NGLMYCRGDSSDYDEYEKL 35 (67)
Q Consensus 3 ~~~rGk~lGGsS~i--------N~~~~~rg~~~d~d~Wa~~ 35 (67)
.+|.|++|||||+. |.+.-..-++.+.-+++..
T Consensus 93 ~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~ 133 (280)
T PRK14614 93 NIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVK 133 (280)
T ss_pred cCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 57899999999985 2222223445556566553
No 21
>PRK01212 homoserine kinase; Provisional
Probab=47.60 E-value=9.5 Score=26.19 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=11.9
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|.+|||||+.
T Consensus 89 ~IP~~~GLGssSa~ 102 (301)
T PRK01212 89 NIPLGRGLGSSAAS 102 (301)
T ss_pred CCCCCCCCcHHHHH
Confidence 47899999999875
No 22
>PTZ00298 mevalonate kinase; Provisional
Probab=47.43 E-value=9 Score=26.95 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=12.4
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|.+|||||++=
T Consensus 102 ~IP~gaGLGSSsA~a 116 (328)
T PTZ00298 102 PLVPSSGIGASASDV 116 (328)
T ss_pred CCCCCCCchHHHHHH
Confidence 479999999998743
No 23
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=46.11 E-value=9.8 Score=25.99 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=12.3
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|++||+||+.=
T Consensus 92 ~iP~~~GLGSSsa~a 106 (286)
T PRK00128 92 NIPVAAGLAGGSSDA 106 (286)
T ss_pred CCCccccchHHHHHH
Confidence 478999999998753
No 24
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=45.49 E-value=11 Score=26.14 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.8
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++||+||+.
T Consensus 88 ~IP~~~GLGSSsa~ 101 (302)
T TIGR00191 88 NIPLGRGLGSSAAA 101 (302)
T ss_pred CCCCcCCCChHHHH
Confidence 47899999999873
No 25
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=45.11 E-value=10 Score=26.42 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=20.3
Q ss_pred cccccccccchhHh--------hcceeccCChhhHHHHHhc
Q psy939 3 KIFDGKVMGGTTVL--------NGLMYCRGDSSDYDEYEKL 35 (67)
Q Consensus 3 ~~~rGk~lGGsS~i--------N~~~~~rg~~~d~d~Wa~~ 35 (67)
.+|.+++|||||+. |-+.-..-+.++.-.++..
T Consensus 96 ~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~ 136 (296)
T PRK14615 96 GIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAG 136 (296)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 57899999999875 3332223344555555543
No 26
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=41.62 E-value=13 Score=25.86 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=12.0
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++||+||+.
T Consensus 94 ~IP~~~GLGSssa~ 107 (312)
T PRK02534 94 RIPIGAGLAGGSTD 107 (312)
T ss_pred CCCCcCCccHHHHH
Confidence 57899999999984
No 27
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=41.29 E-value=13 Score=25.63 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=12.7
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.|.+|||||+.=+
T Consensus 90 ~IP~~aGLGssss~aa 105 (269)
T PRK14609 90 HIPIGAGLGGGSSDAA 105 (269)
T ss_pred CCCCCCcccHHHHHHH
Confidence 5789999999987533
No 28
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=40.87 E-value=14 Score=25.69 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=12.6
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.|.+|||||+.=+
T Consensus 94 ~iP~~aGLGsssa~aa 109 (293)
T TIGR00154 94 NIPMGAGLGGGSSDAA 109 (293)
T ss_pred cCCCCCCcchhHHHHH
Confidence 4788999999987543
No 29
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=40.70 E-value=12 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.2
Q ss_pred cccccccccchhHhhcceecc
Q psy939 3 KIFDGKVMGGTTVLNGLMYCR 23 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~~~~~r 23 (67)
.+|.|-+|||||+ |+....+
T Consensus 93 ~IPv~aGLGGGSS-dAAa~L~ 112 (289)
T COG1947 93 NIPVGAGLGGGSS-DAAAVLV 112 (289)
T ss_pred cCcccCcCccchH-HHHHHHH
Confidence 4788999999987 4444444
No 30
>PRK03926 mevalonate kinase; Provisional
Probab=39.05 E-value=16 Score=25.08 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.8
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|.+||+||+.
T Consensus 83 ~iP~~~GLGSSsA~ 96 (302)
T PRK03926 83 QIPVGSGLGSSAAV 96 (302)
T ss_pred CCCCCCCccHHHHH
Confidence 47899999999874
No 31
>PLN02451 homoserine kinase
Probab=36.61 E-value=18 Score=26.31 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=12.2
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++|||||+.
T Consensus 142 ~IP~g~GLGSSaA~ 155 (370)
T PLN02451 142 GLPLGSGLGSSAAS 155 (370)
T ss_pred CCCCCCCccHHHHH
Confidence 47899999999976
No 32
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=32.37 E-value=23 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.4
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|.+||+|+++=
T Consensus 86 ~iP~g~GLGSSaa~~ 100 (273)
T TIGR00549 86 EIPPGRGLGSSAAVA 100 (273)
T ss_pred CCCCCCCccHHHHHH
Confidence 478999999998853
No 33
>PTZ00299 homoserine kinase; Provisional
Probab=31.95 E-value=23 Score=25.53 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=11.7
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.+++|||||+.
T Consensus 90 ~IP~~~GLGSSsA~ 103 (336)
T PTZ00299 90 NIPYGCGCGSSSAA 103 (336)
T ss_pred CCCccCCccHHHHH
Confidence 47889999998875
No 34
>PRK01123 shikimate kinase; Provisional
Probab=28.81 E-value=29 Score=23.88 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=11.9
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.+++||+|+++
T Consensus 83 ~IP~~~GLGSSaA~ 96 (282)
T PRK01123 83 EIPLASGLKSSSAA 96 (282)
T ss_pred CCCCCCCccHHHHH
Confidence 47899999999974
No 35
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=25.19 E-value=40 Score=16.99 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=11.0
Q ss_pred cceeccCChhhHH
Q psy939 18 GLMYCRGDSSDYD 30 (67)
Q Consensus 18 ~~~~~rg~~~d~d 30 (67)
+|+|.++.++|-.
T Consensus 20 gM~Y~~~~~eD~~ 32 (41)
T PF13878_consen 20 GMLYSPGSPEDEK 32 (41)
T ss_pred CCEECCCCHHHHH
Confidence 7999999999854
No 36
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=23.80 E-value=41 Score=23.00 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=11.8
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++||+||++
T Consensus 72 ~iP~~~GLGSSaA~ 85 (261)
T TIGR01920 72 EIPAGSGLKSSSAL 85 (261)
T ss_pred CCCCCCCcchHHHH
Confidence 47899999999983
No 37
>PTZ00204 hypothetical protein; Provisional
Probab=23.78 E-value=28 Score=21.56 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=18.9
Q ss_pred hcceeccCChhhHHHHHhc-CCCCCChhh
Q psy939 17 NGLMYCRGDSSDYDEYEKL-GATGWGYKN 44 (67)
Q Consensus 17 N~~~~~rg~~~d~d~Wa~~-g~~gWsw~~ 44 (67)
.+|+.+ ..+.-|-+|++. +.++|+|++
T Consensus 36 ~am~l~-e~~~hy~rw~arg~sedwdysn 63 (120)
T PTZ00204 36 HAMTLI-EISGHYHRWVARGESEDWDYSN 63 (120)
T ss_pred ceEEEE-ecCCceeehhhcCCcccccccC
Confidence 344433 345568899998 778899987
No 38
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=23.38 E-value=42 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=20.8
Q ss_pred ccccccccccchhH-----hhcceeccCChhhHH
Q psy939 2 VKIFDGKVMGGTTV-----LNGLMYCRGDSSDYD 30 (67)
Q Consensus 2 ~~~~rGk~lGGsS~-----iN~~~~~rg~~~d~d 30 (67)
+..|.|-+||+||+ +|++.-+++..-+-.
T Consensus 96 ~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~ 129 (333)
T COG2605 96 SDAPPGSGLGSSSAFVVALLNALHAWKGESLGPY 129 (333)
T ss_pred cCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHH
Confidence 35688999999997 477777776554443
No 39
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=22.61 E-value=55 Score=21.66 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=9.8
Q ss_pred hhHHHHHHHhhhc
Q psy939 43 KNVLPYFLKSEHN 55 (67)
Q Consensus 43 ~~~~p~f~k~e~~ 55 (67)
.+|+|||+|+...
T Consensus 87 ~eLqPYFdKLN~~ 99 (162)
T PF12207_consen 87 MELQPYFDKLNGH 99 (162)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HhcchHHHHhcCC
Confidence 3579999998755
No 40
>PRK10759 lipoprotein; Provisional
Probab=21.21 E-value=58 Score=20.20 Aligned_cols=11 Identities=27% Similarity=1.023 Sum_probs=9.2
Q ss_pred CCCCCChhhHH
Q psy939 36 GATGWGYKNVL 46 (67)
Q Consensus 36 g~~gWsw~~~~ 46 (67)
+.++|||+++.
T Consensus 79 ~GsgwSwkDla 89 (106)
T PRK10759 79 AGSGWSWKDLA 89 (106)
T ss_pred CCCCCCHHHHH
Confidence 56799999984
Done!