Query psy939
Match_columns 67
No_of_seqs 121 out of 1118
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:53:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qvp_A Glucose oxidase; oxidor 99.8 1.4E-21 4.7E-26 144.5 5.1 58 2-59 92-150 (583)
2 3fim_B ARYL-alcohol oxidase; A 99.8 2.2E-21 7.7E-26 142.7 5.1 57 2-58 76-133 (566)
3 3q9t_A Choline dehydrogenase a 99.8 9.3E-21 3.2E-25 139.7 2.0 56 4-59 84-139 (577)
4 1gpe_A Protein (glucose oxidas 99.8 7E-20 2.4E-24 134.4 5.1 57 2-58 96-153 (587)
5 3t37_A Probable dehydrogenase; 99.7 5.8E-19 2E-23 125.3 4.4 57 2-58 89-146 (526)
6 2jbv_A Choline oxidase; alcoho 99.7 3.5E-18 1.2E-22 124.3 4.9 56 2-57 85-141 (546)
7 1coy_A Cholesterol oxidase; ox 99.6 1.8E-16 6E-21 114.2 2.5 53 2-58 104-157 (507)
8 1n4w_A CHOD, cholesterol oxida 99.6 2E-16 6.8E-21 113.7 2.6 53 2-58 99-152 (504)
9 1ju2_A HydroxynitrIle lyase; f 99.3 1.5E-12 5.1E-17 94.5 2.8 51 2-56 95-145 (536)
10 1kdg_A CDH, cellobiose dehydro 99.2 4.9E-12 1.7E-16 91.0 0.9 49 3-57 86-137 (546)
11 2oi2_A Mevalonate kinase; enzy 54.3 4.3 0.00015 26.1 1.0 16 3-18 82-97 (292)
12 1h72_C HK, homoserine kinase; 54.3 4.2 0.00014 26.4 1.0 16 3-18 84-99 (296)
13 1uek_A 4-(cytidine 5'-diphosph 53.5 4.4 0.00015 26.2 1.0 15 3-17 84-98 (275)
14 2v8p_A 4-diphosphocytidyl-2-C- 53.4 4.4 0.00015 26.3 1.0 15 3-17 89-103 (271)
15 2ww4_A 4-diphosphocytidyl-2C-m 50.5 5 0.00017 26.5 0.9 15 3-17 97-111 (283)
16 2x7i_A Mevalonate kinase; tran 48.5 5.8 0.0002 25.9 1.0 17 3-19 94-110 (308)
17 2hfs_A Mevalonate kinase, puta 48.5 5.8 0.0002 26.1 1.0 16 3-18 105-120 (332)
18 1kkh_A Mevalonate kinase; mixe 48.3 5.9 0.0002 25.9 1.0 16 3-18 107-122 (317)
19 2cz9_A Probable galactokinase; 48.3 5.9 0.0002 26.2 1.0 17 3-19 95-111 (350)
20 3pyf_A 4-diphosphocytidyl-2-C- 45.6 6.8 0.00023 26.2 1.0 15 3-17 96-110 (306)
21 2gs8_A Mevalonate pyrophosphat 44.4 7.3 0.00025 25.7 0.9 15 3-17 100-114 (317)
22 3hul_A HSK, HK, homoserine kin 41.8 8.5 0.00029 25.6 1.0 15 3-17 79-93 (298)
23 4hac_A Mevalonate kinase; GHMP 41.2 8.9 0.0003 25.6 1.0 17 3-19 105-121 (321)
24 1kvk_A MK, mevalonate kinase; 40.8 8.9 0.0003 26.1 1.0 16 3-18 136-151 (395)
25 1wuu_A Galactokinase; galactos 39.4 9.6 0.00033 26.1 1.0 15 3-17 139-153 (399)
26 1pie_A Galactokinase; galactos 35.0 12 0.00043 25.7 1.0 16 3-18 149-164 (419)
27 3k85_A D-glycero-D-manno-hepto 33.6 14 0.00047 25.2 1.0 17 3-19 106-122 (357)
28 2hke_A Diphosphomevalonate dec 33.6 14 0.00047 25.4 1.0 14 3-16 105-118 (380)
29 1fi4_A Mevalonate 5-diphosphat 27.6 20 0.00068 25.1 1.0 14 3-16 131-144 (416)
30 2a2c_A N-acetylgalactosamine k 26.8 21 0.0007 25.3 1.0 14 3-16 157-170 (478)
31 3qt5_A Mevalonate diphosphate 26.4 21 0.00073 24.1 1.0 15 3-17 102-116 (332)
32 3lto_A Mevalonate diphosphate 24.6 25 0.00086 24.1 1.0 16 3-18 100-115 (323)
33 2jp7_A MRNA export factor MEX6 24.5 24 0.00083 18.4 0.8 27 31-57 22-50 (57)
No 1
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=99.84 E-value=1.4e-21 Score=144.46 Aligned_cols=58 Identities=31% Similarity=0.556 Sum_probs=54.5
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCC-CCChhhHHHHHHHhhhccCCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGAT-GWGYKNVLPYFLKSEHNLQYN 59 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~-gWsw~~~~p~f~k~e~~~~~~ 59 (67)
+.++|||+|||||+||+|+|+||++.|||.|+++|++ +|+|++|+|||+|+|+++.|.
T Consensus 92 ~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~ 150 (583)
T 3qvp_A 92 ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPN 150 (583)
T ss_dssp CEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCC
T ss_pred eeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCc
Confidence 5789999999999999999999999999999999777 999999999999999998664
No 2
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=99.83 E-value=2.2e-21 Score=142.70 Aligned_cols=57 Identities=25% Similarity=0.641 Sum_probs=54.9
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQY 58 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~~ 58 (67)
+.++|||+|||||+||+|+|+|+++.|||.|+++ |+++|+|++|+|||+|+|++..|
T Consensus 76 ~~~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~ 133 (566)
T 3fim_B 76 IAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPP 133 (566)
T ss_dssp CBCCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCC
T ss_pred EeccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCc
Confidence 5789999999999999999999999999999999 99999999999999999999866
No 3
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=99.80 E-value=9.3e-21 Score=139.68 Aligned_cols=56 Identities=27% Similarity=0.611 Sum_probs=53.8
Q ss_pred ccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhccCCC
Q psy939 4 IFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYN 59 (67)
Q Consensus 4 ~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~~~~ 59 (67)
++|||+|||||+||+|+|+||++.|||.|+++|+++|+|++|+|||+|+|++..+.
T Consensus 84 ~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~ 139 (577)
T 3q9t_A 84 NTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDP 139 (577)
T ss_dssp ECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTT
T ss_pred ccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCc
Confidence 89999999999999999999999999999999999999999999999999997764
No 4
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=99.79 E-value=7e-20 Score=134.42 Aligned_cols=57 Identities=35% Similarity=0.648 Sum_probs=54.4
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQY 58 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~~ 58 (67)
+.++|||+|||||+||+|+|+|+++.|||.|+++ |+++|+|++|+|||+|+|++..+
T Consensus 96 ~~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~ 153 (587)
T 1gpe_A 96 NNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTP 153 (587)
T ss_dssp CEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCC
T ss_pred eeeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCC
Confidence 5689999999999999999999999999999999 99999999999999999998765
No 5
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=99.75 E-value=5.8e-19 Score=125.27 Aligned_cols=57 Identities=28% Similarity=0.624 Sum_probs=53.2
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQY 58 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~~ 58 (67)
+.++|||+|||||+||+|+|+|+++.|||.|++. ++.+|+|++++|||+++|++...
T Consensus 89 ~~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~ 146 (526)
T 3t37_A 89 HHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG 146 (526)
T ss_dssp CEECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTT
T ss_pred EeccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCC
Confidence 5689999999999999999999999999999986 99999999999999999987543
No 6
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=99.72 E-value=3.5e-18 Score=124.25 Aligned_cols=56 Identities=32% Similarity=0.537 Sum_probs=53.1
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhhccC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~-~g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
+.+++||+|||||+||+|+|+|+.+.|||.|++ +|+++|+|++|+|||+|+|++..
T Consensus 85 ~~~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~ 141 (546)
T 2jbv_A 85 MRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNED 141 (546)
T ss_dssp CEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETT
T ss_pred EEeecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccC
Confidence 568899999999999999999999999999999 69999999999999999998866
No 7
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=99.60 E-value=1.8e-16 Score=114.17 Aligned_cols=53 Identities=21% Similarity=0.446 Sum_probs=49.1
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHH-HHHHHhhhccCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVL-PYFLKSEHNLQY 58 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~-p~f~k~e~~~~~ 58 (67)
+.+++||+|||||+||+|+|+|+++.|||.|+ ++|+|++|+ |||+|+|++..+
T Consensus 104 ~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~~~~ 157 (507)
T 1coy_A 104 IKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGV 157 (507)
T ss_dssp CEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTC
T ss_pred eEEEEecccchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHHhCC
Confidence 45789999999999999999999999999997 689999999 999999998764
No 8
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=99.60 E-value=2e-16 Score=113.67 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=49.2
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHH-HHHHHhhhccCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVL-PYFLKSEHNLQY 58 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~-p~f~k~e~~~~~ 58 (67)
+.+++||+|||||+||+|+|+|+++.|||.|+ ++|+|++|+ |||+|+|++..+
T Consensus 99 ~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~~~~ 152 (504)
T 1n4w_A 99 MSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRV 152 (504)
T ss_dssp CEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTC
T ss_pred eEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHHhCC
Confidence 46789999999999999999999999999997 789999999 999999998654
No 9
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=99.26 E-value=1.5e-12 Score=94.50 Aligned_cols=51 Identities=27% Similarity=0.552 Sum_probs=44.3
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhcc
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNL 56 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~ 56 (67)
+.+++||+|||||+||+|+|+|+++.||+.+ | .+|+|++++|||+++|+..
T Consensus 95 ~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~~ 145 (536)
T 1ju2_A 95 IDNVRGRVLGGTSIINAGVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDTI 145 (536)
T ss_dssp CEEEEECBTTGGGGTSCCEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHHH
T ss_pred ceeecceeccccccccCeEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhccc
Confidence 3578999999999999999999999999732 2 2499999999999999864
No 10
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=99.15 E-value=4.9e-12 Score=91.05 Aligned_cols=49 Identities=29% Similarity=0.654 Sum_probs=44.5
Q ss_pred cccccccccchhHhhcceeccCChhhHHH---HHhcCCCCCChhhHHHHHHHhhhccC
Q psy939 3 KIFDGKVMGGTTVLNGLMYCRGDSSDYDE---YEKLGATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~~~~~rg~~~d~d~---Wa~~g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
.+++||+|||||+||+|+|+|+.+.|||. | ..+|+|++ |||+|+|++.+
T Consensus 86 ~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W----~~~w~~~~--p~~~k~e~~~~ 137 (546)
T 1kdg_A 86 TVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGW----PSSWTNHA--PYTSKLSSRLP 137 (546)
T ss_dssp SSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTC----CGGGSCCH--HHHHHHHHHSC
T ss_pred ccccceeecccccccceEEecCChHHhcCcccC----ccccCccc--HHHHHHHhcCC
Confidence 46899999999999999999999999997 9 37899999 99999998654
No 11
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=54.32 E-value=4.3 Score=26.13 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=11.0
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.|.+||+||+.=.
T Consensus 82 ~iP~g~GLGSSsa~~~ 97 (292)
T 2oi2_A 82 AIPEKRGMGSSAAISI 97 (292)
T ss_dssp ---CCGGGSCHHHHHH
T ss_pred cCCCCCCchHHHHHHH
Confidence 4789999999998643
No 12
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=54.29 E-value=4.2 Score=26.37 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=13.0
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.|.+|||||+.=.
T Consensus 84 ~iP~g~GLGSSsa~~~ 99 (296)
T 1h72_C 84 GVKAGSGLGSSAASSA 99 (296)
T ss_dssp SSCTTSSSCHHHHHHH
T ss_pred CCCCCCCccHHHHHHH
Confidence 4789999999997643
No 13
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=53.54 E-value=4.4 Score=26.24 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.4
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|++|||||+.=
T Consensus 84 ~IP~g~GLGSSsa~a 98 (275)
T 1uek_A 84 RIPEGAGLGGGSSDA 98 (275)
T ss_dssp CSCSSSSSCHHHHHH
T ss_pred CCCCcCcccHHHHHH
Confidence 478999999999753
No 14
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=53.37 E-value=4.4 Score=26.30 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=12.5
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|++|||||+.=
T Consensus 89 ~IP~g~GLGsSsa~a 103 (271)
T 2v8p_A 89 NIPPGAGLGGGSSNL 103 (271)
T ss_dssp CSCTTSSSCHHHHHH
T ss_pred CCCCCCCCchHHHHH
Confidence 478999999999753
No 15
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=50.47 E-value=5 Score=26.46 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=11.5
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|++|||||+.=
T Consensus 97 ~IP~g~GLGsSsa~~ 111 (283)
T 2ww4_A 97 RLPMGGGLGGGSSNA 111 (283)
T ss_dssp CCC-CTTSCHHHHHH
T ss_pred CCCCCCCccHHHHHH
Confidence 478999999999753
No 16
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=48.52 E-value=5.8 Score=25.86 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=13.5
Q ss_pred cccccccccchhHhhcc
Q psy939 3 KIFDGKVMGGTTVLNGL 19 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~~ 19 (67)
.+|.|.+||+||+.=..
T Consensus 94 ~iP~g~GLGSSsa~~~a 110 (308)
T 2x7i_A 94 NLPPSRGLGSSAAVAVA 110 (308)
T ss_dssp CCCTTSSSCHHHHHHHH
T ss_pred cCCCCCCccHHHHHHHH
Confidence 47899999999976433
No 17
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=48.48 E-value=5.8 Score=26.15 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=13.1
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.|.+||+||+.=.
T Consensus 105 ~iP~g~GLGSSsA~~~ 120 (332)
T 2hfs_A 105 PLVPSSGIGASASDVV 120 (332)
T ss_dssp SCCCCTTSCHHHHHHH
T ss_pred CCCCCCCccHHHHHHH
Confidence 4789999999998643
No 18
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=48.33 E-value=5.9 Score=25.93 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.1
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.|.+||+||+.=.
T Consensus 107 ~iP~~~GLGsSsa~~~ 122 (317)
T 1kkh_A 107 KIPISCGLGSSASITI 122 (317)
T ss_dssp CSCSSSSSCHHHHHHH
T ss_pred CCCCCCCchHHHHHHH
Confidence 4789999999998743
No 19
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=48.29 E-value=5.9 Score=26.22 Aligned_cols=17 Identities=6% Similarity=-0.025 Sum_probs=13.5
Q ss_pred cccccccccchhHhhcc
Q psy939 3 KIFDGKVMGGTTVLNGL 19 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~~ 19 (67)
.+|.|.+||+||++=..
T Consensus 95 ~IP~g~GLGSSaA~~vA 111 (350)
T 2cz9_A 95 NLPLGAGLSSSASFEVG 111 (350)
T ss_dssp SCCTTSSSCHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHH
Confidence 47899999999986433
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=45.56 E-value=6.8 Score=26.21 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=12.3
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|++|||||+.=
T Consensus 96 ~iP~~~GLGsssa~a 110 (306)
T 3pyf_A 96 SIPVAGGMAGGSADA 110 (306)
T ss_dssp CSCTTSSSCHHHHHH
T ss_pred CCCCCCCcchHHHHH
Confidence 478999999999753
No 21
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=44.38 E-value=7.3 Score=25.72 Aligned_cols=15 Identities=0% Similarity=-0.119 Sum_probs=12.1
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|++||+||+.=
T Consensus 100 ~IP~~~GLGSSaA~~ 114 (317)
T 2gs8_A 100 NMPTAAGLSSSSSGL 114 (317)
T ss_dssp CSCGGGCCCHHHHHH
T ss_pred CCCCCCchHHHHHHH
Confidence 478999999998653
No 22
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=41.84 E-value=8.5 Score=25.60 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=12.3
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|.+|||||+.-
T Consensus 79 ~iP~~~GLGsssa~~ 93 (298)
T 3hul_A 79 DIPPARGLGSSSAAV 93 (298)
T ss_dssp CSCTTSSSSHHHHHH
T ss_pred CCCCCCCccHHHHHH
Confidence 578999999999653
No 23
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=41.17 E-value=8.9 Score=25.63 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=13.7
Q ss_pred cccccccccchhHhhcc
Q psy939 3 KIFDGKVMGGTTVLNGL 19 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~~ 19 (67)
.+|.|.+||+||++=..
T Consensus 105 ~iP~g~GLGSSsa~~va 121 (321)
T 4hac_A 105 DIPVGSGLGSSAAVTIA 121 (321)
T ss_dssp CCCSCTTCCHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHH
Confidence 57899999999986543
No 24
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=40.81 E-value=8.9 Score=26.14 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=13.1
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.|.+||+||++=.
T Consensus 136 ~iP~g~GLGSSaA~~v 151 (395)
T 1kvk_A 136 ELPPGAGLGSSAAYSV 151 (395)
T ss_dssp SSCTTSSSCHHHHHHH
T ss_pred cCCCCCCccHHHHHHH
Confidence 4789999999997643
No 25
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=39.42 E-value=9.6 Score=26.05 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=12.6
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|.+||+||++=
T Consensus 139 ~IP~gaGLGSSaA~~ 153 (399)
T 1wuu_A 139 SVPLGGGLSSSASLE 153 (399)
T ss_dssp CSCTTSSSCHHHHHH
T ss_pred CCCCCCCccHHHHHH
Confidence 478999999999764
No 26
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=35.03 E-value=12 Score=25.72 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=13.0
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.|.+||+||++=.
T Consensus 149 ~IP~gaGLGSSaA~~v 164 (419)
T 1pie_A 149 EIPTASGLSSSASLEL 164 (419)
T ss_dssp CSCTTSSSCHHHHHHH
T ss_pred CCCCCCChhHHHHHHH
Confidence 4789999999997643
No 27
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=33.63 E-value=14 Score=25.16 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=13.7
Q ss_pred cccccccccchhHhhcc
Q psy939 3 KIFDGKVMGGTTVLNGL 19 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~~ 19 (67)
.+|.|.+||+||++=..
T Consensus 106 ~iP~g~GLgSSaa~~va 122 (357)
T 3k85_A 106 DAPAGSGLGTSSTMVVC 122 (357)
T ss_dssp SSCSSSSSCHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHH
Confidence 57899999999986543
No 28
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=33.62 E-value=14 Score=25.44 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=11.0
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.+++||+||+.
T Consensus 105 ~IP~aaGLGSSAA~ 118 (380)
T 2hke_A 105 NFPTAAGMASSASG 118 (380)
T ss_dssp CSCTTSCCCHHHHH
T ss_pred cCCCccCcchHHHH
Confidence 46889999988854
No 29
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=27.63 E-value=20 Score=25.06 Aligned_cols=14 Identities=0% Similarity=-0.085 Sum_probs=11.3
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++||+||+.
T Consensus 131 ~IP~~aGLGSSAA~ 144 (416)
T 1fi4_A 131 NFPTAAGLASSAAG 144 (416)
T ss_dssp CCCTTSCCCHHHHH
T ss_pred CCcCcCCccHHHHH
Confidence 47889999998854
No 30
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=26.83 E-value=21 Score=25.31 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=12.4
Q ss_pred cccccccccchhHh
Q psy939 3 KIFDGKVMGGTTVL 16 (67)
Q Consensus 3 ~~~rGk~lGGsS~i 16 (67)
.+|.|++||+|+++
T Consensus 157 ~IP~g~GLgSSAA~ 170 (478)
T 2a2c_A 157 NIPPSSGLSSSSAL 170 (478)
T ss_dssp CSCTTSSSCHHHHH
T ss_pred CCCCCCCchHHHHH
Confidence 47899999999987
No 31
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=26.42 E-value=21 Score=24.06 Aligned_cols=15 Identities=0% Similarity=-0.082 Sum_probs=11.9
Q ss_pred cccccccccchhHhh
Q psy939 3 KIFDGKVMGGTTVLN 17 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN 17 (67)
.+|.|++||+||+.=
T Consensus 102 ~iP~~~GLgSSaa~~ 116 (332)
T 3qt5_A 102 YVPTAAGLASSASAY 116 (332)
T ss_dssp ESCGGGTCCCHHHHH
T ss_pred CCCCCCCcchHHHHH
Confidence 478899999998643
No 32
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=24.63 E-value=25 Score=24.08 Aligned_cols=16 Identities=0% Similarity=-0.087 Sum_probs=12.5
Q ss_pred cccccccccchhHhhc
Q psy939 3 KIFDGKVMGGTTVLNG 18 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~ 18 (67)
.+|.+++||+|++.=+
T Consensus 100 ~IP~aaGLgSSAA~~a 115 (323)
T 3lto_A 100 NFPHSSGLASSASSFA 115 (323)
T ss_dssp SSCTTTTCCCHHHHHH
T ss_pred CCCCccCcchhHHHHH
Confidence 4788999999986543
No 33
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=24.51 E-value=24 Score=18.44 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=19.7
Q ss_pred HHHhc--CCCCCChhhHHHHHHHhhhccC
Q psy939 31 EYEKL--GATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 31 ~Wa~~--g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
.|+.. -+.+|+++.-..-|.++..-++
T Consensus 22 e~S~~cL~~n~Wd~~~A~~~F~~~~~~IP 50 (57)
T 2jp7_A 22 EYTFMLAEQSNWNYEVAIKGFQSSMNGIP 50 (57)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHSTTTSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCC
Confidence 45553 5679999999999999754333
Done!