RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy939
(67 letters)
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 88.4 bits (220), Expect = 7e-23
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 55
GK +GG++ LN + G + +D++E+ G W + ++PY KS
Sbjct: 87 GKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATY 135
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 88.4 bits (220), Expect = 9e-23
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHN 55
G+++GG++ ++ ++ RG + D+D Y + G GW + N+ + K+E
Sbjct: 81 GRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMV 130
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 87.6 bits (218), Expect = 1e-22
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHN 55
GK +GG+T++NG + R D D +EK+ G GW + N+ Y K+E
Sbjct: 101 GKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAA 150
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 86.9 bits (216), Expect = 3e-22
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHN 55
G +GG+T++NG + R + D +E + G GW + NV Y L++E
Sbjct: 97 GNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERA 146
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 81.1 bits (201), Expect = 3e-20
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHN 55
KVMGG + N + D DE+E GATGW + P + + E N
Sbjct: 90 AKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETN 139
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 80.3 bits (199), Expect = 5e-20
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQY 58
G+V+GGT+++N +Y R ++S Y W V + E + Y
Sbjct: 100 GRVLGGTSIINAGVYARANTSIYSA----SGVDWDMDLVNQTYEWVEDTIVY 147
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 80.2 bits (199), Expect = 6e-20
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDE-YEKLGATGWGYKNVLPYFLKSEHN 55
G+++GG++ L+ + Y RG SD+ + G WG+ +LP F E +
Sbjct: 94 GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH 143
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 71.1 bits (175), Expect = 1e-16
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGW--GYKNVLPYFLKSEHNL 56
G ++GG T +NG +Y + D+ + GW + N PY K L
Sbjct: 90 GCLVGGGTSVNGALYWYPNDGDFS-----SSVGWPSSWTNHAPYTSKLSSRL 136
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi
2, protein structure initiative, midwest center for
structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP:
d.198.5.2
Length = 105
Score = 26.4 bits (58), Expect = 0.53
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 15 VLNGLMYCRGDSSDYDEYEKLGATGWGYKN-----VLPYFLKSEHNLQ 57
V+N ++ R D ++E G + YK V Y+ S +
Sbjct: 40 VVNNQLHIRADQQTSSDFETQGLKPYVYKKRGFPVVTKYYAISSELWE 87
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains,
glycosidase, hydrolase; HET: NAG BMA; 1.70A
{Phanerochaete chrysosporium} PDB: 3eqo_A*
Length = 758
Score = 26.5 bits (57), Expect = 0.70
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 48 YFLKSEHNLQYNYQSYSAQN 67
SEH++ Y Y +A N
Sbjct: 611 IGTASEHHINYQYFLKNAAN 630
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 26.1 bits (58), Expect = 0.72
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 43 KNVLPYFLKSEHNLQ-YNYQSY 63
V+P +Q Y Y Y
Sbjct: 256 SEVIPGATSLGMRVQAYLYDGY 277
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation,
SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A
{Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A*
1deo_A* 1pp4_A* 3c1u_A*
Length = 233
Score = 25.8 bits (56), Expect = 1.1
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 13 TTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE 53
TTV Y GDS+ G GWG L +L +
Sbjct: 1 TTV-----YLAGDSTMAKNGGGSGTNGWG--EYLASYLSAT 34
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid,
biosynthesis, plant protein; HET: NAP; 1.70A {Medicago
sativa}
Length = 312
Score = 24.8 bits (55), Expect = 1.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 34 KLGATGWGYKNVLPYFLKSEHNLQYNY 60
KL T V+P KS LQ +Y
Sbjct: 87 KLWVTENHPHLVIPALQKSLKTLQLDY 113
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961;
structural genomics, PSI, protein structure initiative;
1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Length = 317
Score = 24.8 bits (55), Expect = 2.3
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 34 KLGATGWGYKNVLPYFLKSEHNLQYNY 60
K + +S LQ Y
Sbjct: 81 KAWTHELAPGKLEGGLRESLKKLQLEY 107
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 24.5 bits (54), Expect = 3.3
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 39 GWGYKNVLPYFLKSEHNLQYNYQ 61
G N L F+K + ++ +
Sbjct: 63 GAKIFNKLIEFMKLQQKFKFGFN 85
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 24.4 bits (54), Expect = 3.6
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 32 YEKLGATGWGYK 43
LGAT +GY+
Sbjct: 169 MPGLGATPFGYQ 180
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase;
HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Length = 344
Score = 23.7 bits (52), Expect = 4.7
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 34 KLGATGWGYKNVLPYFLKSEHNLQYNY 60
K+ T + V P + +LQ +Y
Sbjct: 112 KIWCTNLAPERVRPALENTLKDLQLDY 138
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 24.0 bits (53), Expect = 4.9
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 32 YEKLGATGWGYK 43
+ G+TG GY
Sbjct: 192 VPQTGSTGDGYA 203
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 24.0 bits (53), Expect = 5.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 32 YEKLGATGWGYK 43
K+GATG Y+
Sbjct: 188 IPKMGATGLAYR 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.418
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,033,172
Number of extensions: 45302
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 20
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)