RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy939
         (67 letters)



>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
           fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 32.3 bits (72), Expect = 0.002
 Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 10/68 (14%)

Query: 7   GKVMGGTTVLNGLMYCRGDSSDYDEYEK----------LGATGWGYKNVLPYFLKSEHNL 56
              +  T+      + R  S+   +  +          +G     +    P F + +  L
Sbjct: 81  VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPL 140

Query: 57  QYNYQSYS 64
                + +
Sbjct: 141 LVKDDADA 148


>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 391

 Score = 29.9 bits (66), Expect = 0.013
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 8   KVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHN 55
           K +GG+T++NG  + R D    D +EK  G  GW + N+  Y  K+E  
Sbjct: 102 KGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAA 150


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
           (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 24.1 bits (51), Expect = 1.4
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 8   KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNYQSY 63
           +V+GGT+++N  +Y R ++S Y          W    V   +   E  + Y   S 
Sbjct: 101 RVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIVYKPNSQ 152


>d1prta_ d.166.1.1 (A:) Pertussis toxin, S1 subunit {Bordetella
          pertussis [TaxId: 520]}
          Length = 234

 Score = 22.6 bits (48), Expect = 4.5
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 23 RGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNYQS 62
          R DS   ++  + G T WG  + +   L        +  S
Sbjct: 8  RYDSRPPEDVFQNGFTAWGNNDNVLEHLTGRSCQVGSSNS 47


>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 22.5 bits (47), Expect = 5.5
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 9   VMGGTTVLNGLMYCRGDSSDYDEYEKLGATGW-GYKNVLPYFLKSEHN 55
            +GG+T++NG  + R   +  D +E +       + NV  Y L++E  
Sbjct: 97  GLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERA 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 261,049
Number of extensions: 9223
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 7
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)