BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9394
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IVN|A Chain A, Structure Of Up1 Protein
pdb|2IVO|A Chain A, Structure Of Up1 Protein
pdb|2IVO|B Chain B, Structure Of Up1 Protein
pdb|2IVO|C Chain C, Structure Of Up1 Protein
pdb|2IVO|D Chain D, Structure Of Up1 Protein
pdb|2IVP|A Chain A, Structure Of Up1 Protein
Length = 330
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 166/344 (48%), Gaps = 29/344 (8%)
Query: 1 MIILGIESSCDDSGLALY--DTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIP 58
M+ LGIE + G+ + D + N+ + + E GG+ P+ AA H + + P
Sbjct: 1 MLALGIEGTAHTLGIGIVSEDKVLANV-------FDTLTTEKGGIHPKEAAEHHARLMKP 53
Query: 59 XXXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLL 118
ID+IA+++ A ++A+ KP++G+NH H+
Sbjct: 54 LLRKALSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHV- 112
Query: 119 SPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGY 178
+ P + L VSGG+TQ++ + G Y + GETLD G+ D A+ L LG+
Sbjct: 113 -EITKMFGVKDP-VGLYVSGGNTQVLALEG-GRYRVFGETLDIGIGNAIDVFARELGLGF 169
Query: 179 PGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
PGGP++ ++E G+ I + P + + SFSGL T + K S K ++
Sbjct: 170 PGGPKVEKLAEKGEKYI-ELPYAV---KGMDLSFSGLLTEAIR-----KYRSGKYRVEDL 220
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
A F + L A+ +T +++V+VGGV AN +LR+ L I+ + F P
Sbjct: 221 AYSFQETAFAALVEVTERAVAHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPY 280
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFN---IKPQWKINKI 339
+ C DNGAMIA+ G +R+ YK+ ++ +K +++ +++
Sbjct: 281 DLCRDNGAMIAYTG-LRM---YKAGISFRLEETIVKQKFRTDEV 320
>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|B Chain B, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3EN9|A Chain A, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
pdb|3EN9|B Chain B, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
Length = 540
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 24/341 (7%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKE-YGGVVPELAARTHIQTIIPX 59
MI LG+E + + +G+ + + V+ ++ +++K G+ P AA H +T
Sbjct: 6 MICLGLEGTAEKTGVGIVTSD-----GEVLFNKTIMYKPPKQGINPREAADHHAETF--P 58
Query: 60 XXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLS 119
ID+IA+++ +A +++L++ KP+IG+NH H+
Sbjct: 59 KLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEI 118
Query: 120 PFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYP 179
L+ + P + L VSGG+TQ+I S Y + GETLD A G+ D+ A+ ++L +P
Sbjct: 119 GKLTTEAED-P-LTLYVSGGNTQVIAYVS-KKYRVFGETLDIAVGNCLDQFARYVNLPHP 175
Query: 180 GGPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
GGP I ++ G + P YT + +FSGL T+ + + +I
Sbjct: 176 GGPYIEELARKG-KKLVDLP----YTVKGMDIAFSGLLTAAMRAY------DAGERLEDI 224
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
+ +LT AL +T ++++VGGV AN +LR+ L + + N + P K
Sbjct: 225 CYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPK 284
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
EFC DNGAMIA+ G + + N + S E I P ++ + +
Sbjct: 285 EFCGDNGAMIAWLGLL-MHKNGRWMSLDETKIIPNYRTDMV 324
>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis.
pdb|2VWB|B Chain B, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis
Length = 535
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 24/341 (7%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKE-YGGVVPELAARTHIQTIIPX 59
MI LG+E + + +G+ + + V+ ++ +++K G+ P AA H +T
Sbjct: 1 MICLGLEGTAEKTGVGIVTSD-----GEVLFNKTIMYKPPKQGINPREAADHHAETF--P 53
Query: 60 XXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLS 119
ID+IA+++ +A +++L++ KP+IG+NH H+
Sbjct: 54 KLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEI 113
Query: 120 PFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYP 179
L+ + P + L VSGG+TQ+I S Y + GETLD A G+ D+ A+ ++L +P
Sbjct: 114 GKLTTEAED-P-LTLYVSGGNTQVIAYVS-KKYRVFGETLDIAVGNCLDQFARYVNLPHP 170
Query: 180 GGPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
GGP I ++ G + P YT + +FSGL T+ + + +I
Sbjct: 171 GGPYIEELARKG-KKLVDLP----YTVKGMDIAFSGLLTAAMRAY------DAGERLEDI 219
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
+ +LT AL +T ++++VGGV AN +LR+ L + + N + P K
Sbjct: 220 CYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPK 279
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
EFC DNGAMIA+ G + + N + S E I P ++ + +
Sbjct: 280 EFCGDNGAMIAWLGLL-MHKNGRWMSLDETKIIPNYRTDMV 319
>pdb|3ENO|A Chain A, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
pdb|3ENO|B Chain B, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
Length = 334
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 162/341 (47%), Gaps = 23/341 (6%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHK-EYGGVVPELAARTHIQTIIPX 59
MI+LG+E + + D S ++ ++ +++ + GG+ P AA H + I
Sbjct: 6 MIVLGLEGTAHTISCGIID------ESRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTV 59
Query: 60 XXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLS 119
ID+I ++ A +I++ KP+IG+NH GH+
Sbjct: 60 ISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHI-- 117
Query: 120 PFLSNNSLTFPFIALLVSGGHTQLIK-VNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGY 178
+ + L VSGG+TQ+I VN G Y +LGETLD G+ DK A+ + +
Sbjct: 118 EIGRRVTGAIDPVMLYVSGGNTQVIAHVN--GRYRVLGETLDIGIGNMIDKFAREAGIPF 175
Query: 179 PGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
PGGPEI ++ G + P + +FSG+ T+ L +K + +++ +I
Sbjct: 176 PGGPEIEKLAMKGT-KLLDLP---YSVKGMDTAFSGILTAALQYLKTGQ--AIEDISYSI 229
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
+++VL AL +G +++++ GGV N++LR + + ++ + +
Sbjct: 230 QETAFAMLVEVLE----RALYVSGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDR 285
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
E+C DNG MIA A + ++ + S E + P+++I+++
Sbjct: 286 EYCMDNGIMIAQAALLMYKSGVRM-SVEETAVNPRFRIDEV 325
>pdb|2GEL|A Chain A, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEL|G Chain G, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEM|A Chain A, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
pdb|2GEM|B Chain B, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
Length = 231
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%)
Query: 46 ELAARTHIQTIIPXXXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINK 105
EL R H Q I+P ID +A+ R IA +AL N
Sbjct: 28 ELCPREHTQRILPMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANL 87
Query: 106 PVIGINHL 113
P+IG++ L
Sbjct: 88 PMIGVSTL 95
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 28/206 (13%)
Query: 106 PVIGINHLEGHLLSPFLSNNSLTFPFIA-------------LLVSGGHTQLIKVNSI-GN 151
P++ EG +LSP L++ + F +I VS + L KV +
Sbjct: 35 PILMEKEEEG-MLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSE 93
Query: 152 YF--LLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKF----PR-PMLY 204
YF L E++ D ++ + +++D GYP + ++ EF +K PR P
Sbjct: 94 YFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATV 153
Query: 205 TNNFNFSFSGLKTS----VLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKN 260
TN ++ G+K L+VI+ + L L N+ R + I + F
Sbjct: 154 TNAVSWRSEGIKYRKNEVFLDVIEAVNL--LVSANGNVLRSEIVGSIKMRVFLSGMPELR 211
Query: 261 TGINKLVVVGGVGANKQLRKKLNILK 286
G+N V+ G K +L +K
Sbjct: 212 LGLNDKVLFDNTGRGKSKSVELEDVK 237
>pdb|1OKJ|A Chain A, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|B Chain B, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|C Chain C, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|D Chain D, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
Length = 251
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 26/68 (38%)
Query: 46 ELAARTHIQTIIPXXXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINK 105
EL R H Q I+P I+ +AY R IA +AL
Sbjct: 48 ELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAEL 107
Query: 106 PVIGINHL 113
P+IG++ L
Sbjct: 108 PMIGVSTL 115
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 222 VIKNIKLDSLKK-EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRK 280
+++ I D +K EK+ I+ F + +++ K TGINK+V+ GG N+ L +
Sbjct: 652 ILRQIYEDYMKGFEKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLR 711
Query: 281 KLNILKKQYNYTVFYPKKEFCTDNG 305
+L + V+ K C D G
Sbjct: 712 RLIEKLSLSGFEVYSNSKVPCNDGG 736
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 243 LDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNIL 285
LD+I + KCI A++ GIN+ + VG N +++K L+IL
Sbjct: 33 LDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSIL 75
>pdb|1VDW|A Chain A, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
With Similarities For Inositol-1 Monophosphatase
pdb|1VDW|B Chain B, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
With Similarities For Inositol-1 Monophosphatase
Length = 254
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 200 RPMLYTNNFNFSFSGLKTSVLNVIKNIK-LDSLKKEKANIARGFLDAIIDVLTFKCIAAL 258
R + + +F G T +++ +K + L ++ E A +ARG LDA++D+ + L
Sbjct: 143 RELAEKPSISFYTKGKGTKIIDKVKRTRTLGAIALELAYLARGALDAVVDIRNY-----L 197
Query: 259 KNTGINKLVVVG 270
+ T I VV+
Sbjct: 198 RPTDIAAGVVIA 209
>pdb|2BJY|A Chain A, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|B Chain B, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|C Chain C, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|D Chain D, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|E Chain E, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|F Chain F, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|G Chain G, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|H Chain H, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|I Chain I, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|J Chain J, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|K Chain K, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|L Chain L, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant
Length = 156
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 144 IKVNSIG------NYFLLGETLDD---AAGDTFDKIAKMLDLGYPGGPEISLISEF 190
+K++ IG N+F LGE +DD G+ D++A+ L L G P S + EF
Sbjct: 25 VKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERL-LAIGGSP-FSTLKEF 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,355,213
Number of Sequences: 62578
Number of extensions: 376464
Number of successful extensions: 823
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 16
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)