Query psy9394
Match_columns 339
No_of_seqs 192 out of 1491
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 18:00:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0533 QRI7 Metal-dependent p 100.0 4.9E-72 1.1E-76 511.0 35.1 335 1-339 1-337 (342)
2 PRK09604 UGMP family protein; 100.0 6.5E-68 1.4E-72 498.8 37.1 329 1-339 1-329 (332)
3 PTZ00340 O-sialoglycoprotein e 100.0 6.4E-67 1.4E-71 486.7 35.8 326 1-339 1-339 (345)
4 TIGR03723 bact_gcp putative gl 100.0 2.9E-63 6.2E-68 463.6 34.7 313 3-317 1-314 (314)
5 TIGR00329 gcp_kae1 metallohydr 100.0 7.2E-63 1.6E-67 460.0 32.9 305 4-309 1-305 (305)
6 PRK14878 UGMP family protein; 100.0 3E-62 6.5E-67 458.7 35.4 317 4-339 1-317 (323)
7 TIGR03722 arch_KAE1 universal 100.0 4.8E-62 1E-66 457.9 35.4 318 4-339 1-318 (322)
8 PRK09605 bifunctional UGMP fam 100.0 2E-60 4.2E-65 476.7 37.3 320 1-338 1-320 (535)
9 KOG2707|consensus 100.0 1.4E-57 3.1E-62 410.4 28.9 336 2-338 33-384 (405)
10 PF00814 Peptidase_M22: Glycop 100.0 1.5E-47 3.2E-52 350.4 23.9 268 24-310 1-268 (268)
11 KOG2708|consensus 100.0 9E-45 2E-49 310.5 28.0 327 1-339 2-330 (336)
12 COG2192 Predicted carbamoyl tr 100.0 5.7E-38 1.2E-42 300.3 19.0 294 1-321 1-340 (555)
13 TIGR00143 hypF [NiFe] hydrogen 100.0 3.1E-35 6.8E-40 298.8 31.5 253 37-314 385-710 (711)
14 COG0068 HypF Hydrogenase matur 100.0 1.5E-32 3.2E-37 268.5 24.3 267 12-314 407-745 (750)
15 TIGR03192 benz_CoA_bzdQ benzoy 99.9 1.5E-23 3.3E-28 190.8 23.1 251 1-314 32-286 (293)
16 PF02543 CmcH_NodU: Carbamoylt 99.9 6.8E-24 1.5E-28 201.3 17.8 197 118-323 1-220 (360)
17 TIGR02261 benz_CoA_red_D benzo 99.9 2.9E-22 6.3E-27 180.2 24.9 239 2-296 2-245 (262)
18 TIGR03286 methan_mark_15 putat 99.9 4.7E-22 1E-26 187.5 26.2 240 1-298 144-388 (404)
19 COG1924 Activator of 2-hydroxy 99.9 1E-21 2.2E-26 181.0 23.5 237 1-298 135-375 (396)
20 TIGR03725 bact_YeaZ universal 99.8 1.5E-20 3.2E-25 165.5 14.0 121 3-145 1-121 (202)
21 COG1214 Inactive homolog of me 99.8 1.5E-20 3.3E-25 166.8 12.1 126 1-145 1-126 (220)
22 TIGR00241 CoA_E_activ CoA-subs 99.8 1.2E-18 2.6E-23 158.2 21.9 243 2-312 1-247 (248)
23 TIGR02259 benz_CoA_red_A benzo 99.8 5E-18 1.1E-22 158.6 20.1 165 109-298 250-419 (432)
24 PRK13317 pantothenate kinase; 99.7 2.5E-14 5.3E-19 131.3 24.0 252 1-314 2-272 (277)
25 TIGR00555 panK_eukar pantothen 99.2 1.2E-08 2.6E-13 93.4 22.1 256 3-298 2-267 (279)
26 PF01869 BcrAD_BadFG: BadF/Bad 98.7 6.5E-07 1.4E-11 82.3 16.1 238 4-286 1-244 (271)
27 PRK15080 ethanolamine utilizat 98.1 0.0046 9.9E-08 56.8 24.9 63 245-313 204-266 (267)
28 PRK03011 butyrate kinase; Prov 98.0 0.0045 9.7E-08 59.2 23.8 71 1-79 2-73 (358)
29 PF03702 UPF0075: Uncharacteri 97.7 0.0088 1.9E-07 57.2 20.6 229 56-317 70-340 (364)
30 PLN02920 pantothenate kinase 1 97.6 0.028 6.1E-07 53.8 22.8 211 72-297 95-336 (398)
31 PRK09585 anmK anhydro-N-acetyl 97.6 0.029 6.3E-07 53.6 22.6 235 56-323 73-346 (365)
32 COG2971 Predicted N-acetylgluc 97.5 0.025 5.4E-07 52.1 19.6 73 1-82 5-77 (301)
33 TIGR02707 butyr_kinase butyrat 97.3 0.086 1.9E-06 50.3 21.8 74 241-318 270-345 (351)
34 TIGR02529 EutJ ethanolamine ut 97.2 0.073 1.6E-06 48.0 19.3 48 247-297 179-226 (239)
35 PF02782 FGGY_C: FGGY family o 97.2 0.0046 1E-07 53.7 11.3 77 233-316 118-196 (198)
36 PRK00976 hypothetical protein; 97.0 0.23 4.9E-06 46.6 20.4 68 247-322 248-318 (326)
37 COG1940 NagC Transcriptional r 96.9 0.36 7.8E-06 45.1 22.5 123 1-137 6-141 (314)
38 COG2377 Predicted molecular ch 96.9 0.37 8.1E-06 45.6 20.9 86 233-323 263-351 (371)
39 PLN02902 pantothenate kinase 96.8 0.039 8.5E-07 57.6 15.4 189 72-275 144-359 (876)
40 PF03630 Fumble: Fumble ; Int 96.8 0.27 5.9E-06 46.7 19.9 203 72-297 82-326 (341)
41 TIGR00744 ROK_glcA_fam ROK fam 96.3 0.92 2E-05 42.4 25.1 120 4-137 1-132 (318)
42 PRK05082 N-acetylmannosamine k 96.3 0.9 1.9E-05 42.0 24.0 118 1-137 1-130 (291)
43 PRK09557 fructokinase; Reviewe 96.2 0.84 1.8E-05 42.4 19.1 103 2-121 1-114 (301)
44 PF00370 FGGY_N: FGGY family o 96.0 0.053 1.2E-06 48.8 9.5 77 2-81 1-77 (245)
45 smart00732 YqgFc Likely ribonu 95.9 0.087 1.9E-06 40.1 9.0 88 1-111 1-91 (99)
46 PRK00047 glpK glycerol kinase; 95.8 0.069 1.5E-06 53.5 10.4 84 233-323 372-457 (498)
47 TIGR01312 XylB D-xylulose kina 95.7 0.073 1.6E-06 52.9 10.3 83 234-323 360-444 (481)
48 PTZ00294 glycerol kinase-like 95.7 0.081 1.8E-06 53.1 10.5 84 233-323 375-460 (504)
49 PRK13310 N-acetyl-D-glucosamin 95.6 1.9 4.1E-05 40.1 23.0 72 240-314 223-300 (303)
50 PRK15027 xylulokinase; Provisi 95.4 0.11 2.5E-06 51.7 10.3 83 234-323 357-441 (484)
51 PRK09698 D-allose kinase; Prov 95.3 2.3 5.1E-05 39.4 24.2 102 2-119 5-120 (302)
52 TIGR01311 glycerol_kin glycero 95.3 0.13 2.8E-06 51.5 10.4 84 233-323 368-453 (493)
53 TIGR01314 gntK_FGGY gluconate 95.3 0.12 2.7E-06 51.8 10.1 83 234-323 371-455 (505)
54 PRK10331 L-fuculokinase; Provi 95.3 0.14 3E-06 50.9 10.3 84 233-323 358-443 (470)
55 PRK10640 rhaB rhamnulokinase; 95.2 0.21 4.5E-06 49.7 11.3 83 233-323 344-428 (471)
56 KOG2201|consensus 95.2 0.8 1.7E-05 42.7 13.9 192 77-283 104-325 (371)
57 COG3426 Butyrate kinase [Energ 95.0 2.9 6.3E-05 38.4 22.7 96 2-108 4-126 (358)
58 TIGR02628 fuculo_kin_coli L-fu 94.8 0.2 4.3E-06 49.8 10.0 83 234-323 363-447 (465)
59 PRK05183 hscA chaperone protei 94.8 4.8 0.0001 41.5 20.3 65 250-320 311-380 (616)
60 PTZ00297 pantothenate kinase; 94.6 2.1 4.5E-05 48.4 18.2 65 233-297 1362-1430(1452)
61 PF00012 HSP70: Hsp70 protein; 94.4 4.1 8.9E-05 41.6 18.8 52 262-319 328-379 (602)
62 PRK10939 autoinducer-2 (AI-2) 94.3 0.27 5.9E-06 49.5 9.8 83 234-323 379-463 (520)
63 PLN02295 glycerol kinase 94.3 0.33 7.1E-06 48.9 10.2 84 233-323 376-466 (512)
64 PRK04123 ribulokinase; Provisi 94.2 0.29 6.2E-06 49.7 9.7 82 234-323 409-493 (548)
65 TIGR02627 rhamnulo_kin rhamnul 94.0 0.48 1.1E-05 46.8 10.8 83 233-323 356-440 (454)
66 TIGR01234 L-ribulokinase L-rib 93.9 0.45 9.7E-06 48.2 10.4 83 233-323 405-490 (536)
67 PLN02295 glycerol kinase 93.8 0.27 5.9E-06 49.4 8.7 77 2-81 1-81 (512)
68 COG0554 GlpK Glycerol kinase [ 93.8 0.18 3.9E-06 49.3 6.9 84 233-323 371-456 (499)
69 COG0554 GlpK Glycerol kinase [ 93.7 0.45 9.7E-06 46.7 9.3 76 1-81 5-82 (499)
70 KOG2517|consensus 93.7 0.48 1E-05 47.1 9.7 81 233-320 383-465 (516)
71 TIGR01315 5C_CHO_kinase FGGY-f 93.6 0.68 1.5E-05 46.9 11.0 80 236-323 416-497 (541)
72 PRK13410 molecular chaperone D 93.6 11 0.00023 39.4 24.3 66 249-320 310-380 (668)
73 TIGR01315 5C_CHO_kinase FGGY-f 93.4 0.36 7.8E-06 48.9 8.7 76 3-81 2-77 (541)
74 PRK00039 ruvC Holliday junctio 93.3 0.59 1.3E-05 39.6 8.6 63 1-79 2-67 (164)
75 PTZ00294 glycerol kinase-like 93.2 0.54 1.2E-05 47.2 9.5 77 2-81 3-81 (504)
76 PRK10939 autoinducer-2 (AI-2) 93.1 0.49 1.1E-05 47.7 9.1 78 2-81 4-82 (520)
77 PRK00047 glpK glycerol kinase; 93.0 0.51 1.1E-05 47.2 9.1 77 2-81 6-82 (498)
78 COG1070 XylB Sugar (pentulose 93.0 0.62 1.3E-05 46.8 9.5 61 234-297 371-433 (502)
79 PLN02669 xylulokinase 92.9 0.71 1.5E-05 47.0 9.9 73 234-313 417-489 (556)
80 PRK01433 hscA chaperone protei 92.7 13 0.00029 38.2 24.5 53 262-320 308-360 (595)
81 TIGR01311 glycerol_kin glycero 92.5 0.68 1.5E-05 46.3 9.1 77 2-81 2-78 (493)
82 COG1070 XylB Sugar (pentulose 92.5 1.1 2.4E-05 45.0 10.6 83 1-85 4-87 (502)
83 TIGR01991 HscA Fe-S protein as 92.3 15 0.00033 37.8 24.1 64 251-320 296-364 (599)
84 PF03652 UPF0081: Uncharacteri 92.3 0.48 1E-05 38.8 6.4 91 1-115 1-98 (135)
85 PRK04123 ribulokinase; Provisi 91.9 0.88 1.9E-05 46.1 9.2 77 2-81 4-87 (548)
86 COG0443 DnaK Molecular chapero 91.8 17 0.00037 37.3 24.3 55 262-322 309-363 (579)
87 COG5146 PanK Pantothenate kina 91.6 9.8 0.00021 34.2 17.0 134 140-280 155-295 (342)
88 PRK00109 Holliday junction res 91.4 2.1 4.6E-05 35.1 9.4 93 1-117 4-102 (138)
89 TIGR01234 L-ribulokinase L-rib 91.3 0.93 2E-05 45.9 8.6 77 2-81 2-90 (536)
90 PRK15027 xylulokinase; Provisi 90.4 1.3 2.8E-05 44.2 8.6 75 2-81 1-75 (484)
91 TIGR01312 XylB D-xylulose kina 90.2 0.87 1.9E-05 45.2 7.2 80 4-86 1-81 (481)
92 TIGR01314 gntK_FGGY gluconate 89.8 1.9 4.1E-05 43.3 9.3 76 2-81 1-76 (505)
93 PLN02669 xylulokinase 89.3 1.3 2.9E-05 45.1 7.8 77 2-80 9-96 (556)
94 PRK10331 L-fuculokinase; Provi 89.3 2 4.4E-05 42.6 9.0 76 2-81 3-79 (470)
95 TIGR02628 fuculo_kin_coli L-fu 88.7 2.2 4.7E-05 42.4 8.7 76 2-81 2-78 (465)
96 COG0816 Predicted endonuclease 88.5 4.1 8.9E-05 33.6 8.7 89 1-113 2-97 (141)
97 PRK13321 pantothenate kinase; 88.1 1.8 4E-05 39.3 7.1 62 3-80 2-63 (256)
98 PRK13318 pantothenate kinase; 86.9 2.6 5.7E-05 38.3 7.5 67 3-85 2-69 (258)
99 PTZ00400 DnaK-type molecular c 86.7 44 0.00094 34.9 22.4 65 250-320 350-419 (663)
100 cd00529 RuvC_resolvase Hollida 86.7 6.7 0.00014 32.7 9.2 63 2-79 1-65 (154)
101 PRK00290 dnaK molecular chaper 86.6 3.5 7.7E-05 42.6 9.1 66 249-320 308-378 (627)
102 PRK13311 N-acetyl-D-glucosamin 86.3 3.4 7.4E-05 37.4 7.9 101 3-120 2-113 (256)
103 COG4020 Uncharacterized protei 85.9 3.7 8E-05 37.1 7.4 66 1-84 3-68 (332)
104 PRK13331 pantothenate kinase; 85.5 3.1 6.6E-05 37.8 7.0 39 233-271 174-212 (251)
105 CHL00094 dnaK heat shock prote 85.5 4.1 9E-05 42.0 8.9 53 262-320 328-380 (621)
106 PRK13928 rod shape-determining 85.3 5.3 0.00012 37.7 9.0 60 249-314 254-321 (336)
107 TIGR02350 prok_dnaK chaperone 84.8 4.7 0.0001 41.4 8.9 65 250-320 307-376 (595)
108 PRK13324 pantothenate kinase; 84.4 17 0.00038 33.1 11.5 67 3-84 2-69 (258)
109 PTZ00186 heat shock 70 kDa pre 84.2 57 0.0012 34.1 23.9 53 262-320 353-405 (657)
110 COG1548 Predicted transcriptio 83.9 34 0.00074 31.2 15.0 39 232-270 248-286 (330)
111 PF05378 Hydant_A_N: Hydantoin 83.5 4.8 0.0001 34.5 7.0 61 4-80 2-63 (176)
112 TIGR00904 mreB cell shape dete 83.3 6.6 0.00014 37.0 8.6 44 265-314 282-325 (333)
113 PRK13927 rod shape-determining 83.0 5.8 0.00013 37.3 8.1 45 265-315 279-323 (334)
114 PRK13411 molecular chaperone D 82.5 4.3 9.4E-05 42.2 7.6 66 250-320 310-380 (653)
115 PF11215 DUF3010: Protein of u 82.1 22 0.00048 29.1 9.8 67 1-81 1-69 (138)
116 PLN03184 chloroplast Hsp70; Pr 81.7 6.6 0.00014 41.0 8.5 52 263-320 366-417 (673)
117 PRK13930 rod shape-determining 81.6 8.1 0.00017 36.3 8.5 45 265-315 283-327 (335)
118 PRK07157 acetate kinase; Provi 81.4 4.1 8.8E-05 39.5 6.3 48 243-290 299-349 (400)
119 PRK13929 rod-share determining 81.0 11 0.00023 35.7 9.1 44 265-314 281-324 (335)
120 PF07318 DUF1464: Protein of u 80.9 3.9 8.5E-05 38.7 5.9 39 250-288 247-286 (343)
121 COG1069 AraB Ribulose kinase [ 80.8 4.7 0.0001 40.3 6.6 77 2-80 4-80 (544)
122 PF02075 RuvC: Crossover junct 79.4 6.8 0.00015 32.5 6.4 63 3-80 1-65 (149)
123 PTZ00009 heat shock 70 kDa pro 78.3 7.4 0.00016 40.5 7.6 53 263-320 333-385 (653)
124 PF14574 DUF4445: Domain of un 75.3 13 0.00028 36.4 7.8 79 1-81 1-91 (412)
125 KOG1794|consensus 75.3 71 0.0015 29.7 20.2 70 2-80 4-74 (336)
126 TIGR02259 benz_CoA_red_A benzo 74.0 15 0.00032 35.7 7.7 28 1-29 2-29 (432)
127 PF02801 Ketoacyl-synt_C: Beta 73.0 4.8 0.0001 31.9 3.6 65 54-119 25-93 (119)
128 COG4820 EutJ Ethanolamine util 72.9 7.4 0.00016 34.1 4.9 51 245-298 209-259 (277)
129 PRK12440 acetate kinase; Revie 72.5 11 0.00024 36.5 6.6 26 262-287 320-346 (397)
130 PF06723 MreB_Mbl: MreB/Mbl pr 72.3 15 0.00032 34.8 7.3 57 235-298 250-306 (326)
131 TIGR00250 RNAse_H_YqgF RNAse H 71.6 36 0.00078 27.5 8.5 88 4-115 1-94 (130)
132 PF00480 ROK: ROK family; Int 71.5 59 0.0013 27.1 10.6 116 5-139 1-128 (179)
133 PRK09472 ftsA cell division pr 70.2 1.1E+02 0.0024 29.8 18.1 51 264-315 330-387 (420)
134 cd06559 Endonuclease_V Endonuc 69.1 29 0.00063 30.6 8.0 95 2-112 27-129 (208)
135 TIGR00016 ackA acetate kinase. 66.9 20 0.00043 34.9 7.0 50 242-291 305-357 (404)
136 PRK11678 putative chaperone; P 66.7 29 0.00062 34.4 8.3 75 234-315 370-446 (450)
137 PRK13320 pantothenate kinase; 66.1 40 0.00087 30.4 8.5 41 233-273 174-214 (244)
138 PRK00180 acetate kinase A/prop 65.7 21 0.00045 34.8 6.9 29 262-290 323-352 (402)
139 PRK11617 endonuclease V; Provi 64.9 16 0.00035 32.5 5.6 92 2-111 31-132 (224)
140 TIGR00228 ruvC crossover junct 64.7 33 0.00072 28.8 7.1 61 3-79 1-63 (156)
141 PF00871 Acetate_kinase: Aceto 63.8 14 0.00031 35.8 5.5 27 2-28 1-27 (388)
142 COG1069 AraB Ribulose kinase [ 62.3 55 0.0012 33.0 9.2 55 262-323 431-485 (544)
143 KOG2531|consensus 61.4 29 0.00063 34.2 6.9 43 263-312 443-485 (545)
144 PRK00292 glk glucokinase; Prov 59.5 22 0.00047 33.2 5.8 96 1-121 1-109 (316)
145 PF01890 CbiG_C: Cobalamin syn 58.9 22 0.00048 28.4 4.9 55 54-115 15-69 (121)
146 PRK08304 stage V sporulation p 58.8 25 0.00054 33.3 5.9 30 55-84 59-88 (337)
147 PF04848 Pox_A22: Poxvirus A22 58.4 1E+02 0.0023 25.4 10.4 21 1-21 1-21 (143)
148 KOG0681|consensus 58.1 19 0.00042 36.1 5.2 49 263-314 559-612 (645)
149 PF00108 Thiolase_N: Thiolase, 57.6 13 0.00029 33.9 3.9 68 39-113 16-87 (264)
150 PF04493 Endonuclease_5: Endon 57.0 41 0.00089 29.6 6.7 96 2-112 23-125 (206)
151 PRK07058 acetate kinase; Provi 56.1 37 0.0008 33.0 6.7 29 262-290 318-347 (396)
152 PLN02192 3-ketoacyl-CoA syntha 55.3 35 0.00077 34.3 6.7 36 50-85 173-209 (511)
153 PF06277 EutA: Ethanolamine ut 53.5 2.3E+02 0.0051 28.2 11.8 27 54-80 63-91 (473)
154 PRK07027 cobalamin biosynthesi 53.0 36 0.00078 27.3 5.3 49 54-113 17-69 (126)
155 TIGR01174 ftsA cell division p 52.5 40 0.00086 32.2 6.5 51 236-287 283-339 (371)
156 PF11104 PilM_2: Type IV pilus 52.0 69 0.0015 30.2 7.9 58 236-296 245-305 (340)
157 PRK12408 glucokinase; Provisio 51.7 93 0.002 29.4 8.7 98 2-122 17-128 (336)
158 PF08392 FAE1_CUT1_RppA: FAE1/ 51.2 31 0.00067 32.0 5.1 27 56-82 87-113 (290)
159 PF00871 Acetate_kinase: Aceto 50.0 30 0.00065 33.6 5.1 44 243-286 299-345 (388)
160 PLN02854 3-ketoacyl-CoA syntha 49.5 44 0.00096 33.8 6.3 29 56-84 192-220 (521)
161 TIGR02845 spore_V_AD stage V s 48.6 45 0.00098 31.5 5.8 28 56-83 54-81 (327)
162 PF06406 StbA: StbA protein; 47.4 42 0.0009 31.5 5.6 69 236-306 246-315 (318)
163 TIGR02627 rhamnulo_kin rhamnul 46.8 44 0.00095 33.0 5.9 73 4-81 1-75 (454)
164 TIGR00671 baf pantothenate kin 46.7 2.2E+02 0.0047 25.6 20.2 41 233-273 176-217 (243)
165 COG0282 ackA Acetate kinase [E 46.1 57 0.0012 31.5 6.1 21 1-21 1-21 (396)
166 PRK12408 glucokinase; Provisio 46.0 58 0.0013 30.8 6.3 45 242-286 251-300 (336)
167 cd00831 CHS_like Chalcone and 45.8 43 0.00092 31.8 5.5 32 54-85 87-118 (361)
168 CHL00203 fabH 3-oxoacyl-acyl-c 45.4 27 0.0006 32.6 4.0 27 54-80 226-252 (326)
169 PRK12397 propionate kinase; Re 45.3 78 0.0017 30.9 7.1 30 262-291 321-351 (404)
170 PLN02621 nicotinamidase 44.0 1E+02 0.0022 26.5 7.2 38 259-298 123-160 (197)
171 PRK13326 pantothenate kinase; 43.8 2.6E+02 0.0055 25.5 19.4 39 233-271 186-225 (262)
172 PLN02377 3-ketoacyl-CoA syntha 43.1 58 0.0013 32.8 6.1 29 56-84 176-204 (502)
173 COG1515 Nfi Deoxyinosine 3'end 43.0 89 0.0019 27.6 6.4 101 2-116 30-135 (212)
174 PRK13917 plasmid segregation p 43.0 69 0.0015 30.4 6.4 18 1-18 2-19 (344)
175 PRK14101 bifunctional glucokin 42.9 33 0.00072 35.6 4.5 94 2-119 19-122 (638)
176 PLN02932 3-ketoacyl-CoA syntha 41.9 69 0.0015 32.0 6.3 27 56-82 152-178 (478)
177 PRK10719 eutA reactivating fac 41.4 3.8E+02 0.0082 26.8 11.2 133 4-149 9-166 (475)
178 PRK07108 acetyl-CoA acetyltran 41.3 37 0.00079 33.0 4.3 55 54-112 29-88 (392)
179 PRK06205 acetyl-CoA acetyltran 41.2 40 0.00087 32.8 4.6 29 54-82 28-56 (404)
180 PF00195 Chal_sti_synt_N: Chal 41.1 88 0.0019 28.0 6.3 60 58-119 106-166 (226)
181 PTZ00107 hexokinase; Provision 41.0 1.3E+02 0.0029 29.9 8.1 78 235-316 373-459 (464)
182 PF12982 DUF3866: Protein of u 40.9 55 0.0012 30.7 5.1 21 73-93 175-196 (320)
183 cd00431 cysteine_hydrolases Cy 40.4 1E+02 0.0022 25.2 6.4 38 259-298 106-143 (161)
184 PF02593 dTMP_synthase: Thymid 40.4 73 0.0016 28.3 5.6 41 260-302 74-114 (217)
185 PRK12404 stage V sporulation p 40.0 64 0.0014 30.5 5.4 25 56-80 58-82 (334)
186 PLN00415 3-ketoacyl-CoA syntha 39.5 76 0.0016 31.6 6.1 28 56-83 138-165 (466)
187 PRK12379 propionate/acetate ki 39.4 1.1E+02 0.0023 29.9 7.0 30 262-291 317-347 (396)
188 cd01013 isochorismatase Isocho 39.4 1.2E+02 0.0027 26.2 7.0 42 259-303 138-179 (203)
189 cd01012 YcaC_related YcaC rela 39.0 1.4E+02 0.003 24.5 7.0 42 259-303 84-125 (157)
190 PF10079 DUF2317: Uncharacteri 38.7 86 0.0019 31.9 6.6 39 73-111 82-129 (542)
191 COG1712 Predicted dinucleotide 38.5 1.3E+02 0.0028 27.0 6.8 37 261-297 83-119 (255)
192 PRK05963 3-oxoacyl-(acyl carri 38.1 67 0.0014 29.9 5.4 30 54-85 227-256 (326)
193 PF01968 Hydantoinase_A: Hydan 38.0 57 0.0012 30.2 4.9 75 232-313 206-284 (290)
194 PRK12879 3-oxoacyl-(acyl carri 37.7 66 0.0014 29.8 5.3 27 54-80 225-251 (325)
195 PRK06633 acetyl-CoA acetyltran 37.7 33 0.00073 33.3 3.4 26 56-81 31-56 (392)
196 PF13941 MutL: MutL protein 37.6 2.5E+02 0.0054 28.0 9.4 94 3-112 2-109 (457)
197 KOG0101|consensus 37.5 98 0.0021 31.9 6.7 82 236-322 307-389 (620)
198 PRK08235 acetyl-CoA acetyltran 37.1 47 0.001 32.2 4.3 28 54-81 28-55 (393)
199 PRK06519 3-oxoacyl-(acyl carri 36.8 53 0.0011 32.0 4.6 59 55-119 281-340 (398)
200 PRK11440 putative hydrolase; P 36.7 1.4E+02 0.0031 25.3 6.9 38 259-298 117-154 (188)
201 PRK08963 fadI 3-ketoacyl-CoA t 36.6 49 0.0011 32.5 4.4 27 56-82 33-59 (428)
202 TIGR01175 pilM type IV pilus a 36.3 3.6E+02 0.0079 25.2 11.4 25 3-29 190-214 (348)
203 cd01015 CSHase N-carbamoylsarc 36.3 1.6E+02 0.0035 24.8 7.1 38 259-298 110-147 (179)
204 PF00022 Actin: Actin; InterP 36.1 1.2E+02 0.0027 28.9 7.1 49 264-314 312-365 (393)
205 PRK14101 bifunctional glucokin 36.1 2.1E+02 0.0046 29.7 9.1 50 240-289 246-299 (638)
206 cd00828 elong_cond_enzymes "el 35.5 69 0.0015 30.9 5.2 30 54-84 274-303 (407)
207 TIGR01175 pilM type IV pilus a 34.8 1E+02 0.0022 28.9 6.2 48 239-286 256-306 (348)
208 PRK09258 3-oxoacyl-(acyl carri 34.5 62 0.0013 30.3 4.6 33 54-86 63-96 (338)
209 PRK13320 pantothenate kinase; 34.2 1.1E+02 0.0024 27.5 6.0 26 1-28 2-27 (244)
210 PRK05656 acetyl-CoA acetyltran 33.8 57 0.0012 31.6 4.3 28 54-81 28-55 (393)
211 COG1521 Pantothenate kinase ty 33.8 1.2E+02 0.0027 27.5 6.1 39 234-272 183-222 (251)
212 TIGR03739 PRTRC_D PRTRC system 33.7 89 0.0019 29.2 5.5 41 261-305 272-313 (320)
213 cd00832 CLF Chain-length facto 33.2 79 0.0017 30.7 5.2 31 54-85 270-300 (399)
214 PF14239 RRXRR: RRXRR protein 33.2 85 0.0018 26.9 4.7 25 2-28 52-76 (176)
215 PF03309 Pan_kinase: Type III 33.0 1.6E+02 0.0035 25.5 6.7 64 3-84 1-65 (206)
216 cd00327 cond_enzymes Condensin 32.5 1.2E+02 0.0026 26.7 5.9 28 54-81 9-36 (254)
217 PRK06366 acetyl-CoA acetyltran 32.4 67 0.0015 31.0 4.5 27 54-80 28-54 (388)
218 PLN03173 chalcone synthase; Pr 32.3 1.1E+02 0.0024 29.7 6.0 32 52-85 275-306 (391)
219 PLN03169 chalcone synthase fam 32.3 1.2E+02 0.0026 29.4 6.2 30 57-86 111-140 (391)
220 COG2433 Uncharacterized conser 32.2 58 0.0013 33.2 4.0 32 69-107 75-106 (652)
221 PRK07204 3-oxoacyl-(acyl carri 32.0 59 0.0013 30.3 4.0 27 54-80 230-256 (329)
222 PRK04262 hypothetical protein; 31.9 79 0.0017 29.9 4.9 28 53-80 208-235 (347)
223 cd07229 Pat_TGL3_like Triacylg 31.4 3.2E+02 0.0068 26.7 8.8 39 252-291 72-110 (391)
224 PRK06954 acetyl-CoA acetyltran 31.2 70 0.0015 31.1 4.4 27 54-80 33-59 (397)
225 cd00327 cond_enzymes Condensin 31.1 84 0.0018 27.7 4.7 27 54-80 145-171 (254)
226 PRK13304 L-aspartate dehydroge 31.0 2.3E+02 0.0049 25.7 7.6 37 261-297 84-120 (265)
227 PF01548 DEDD_Tnp_IS110: Trans 30.7 98 0.0021 24.8 4.7 27 3-30 1-27 (144)
228 cd01014 nicotinamidase_related 30.6 1.2E+02 0.0026 24.9 5.2 38 259-298 95-132 (155)
229 PLN02362 hexokinase 30.6 3E+02 0.0064 27.9 8.8 50 265-318 444-499 (509)
230 cd00751 thiolase Thiolase are 30.6 64 0.0014 31.1 4.0 28 54-81 24-51 (386)
231 PRK14691 3-oxoacyl-(acyl carri 30.4 66 0.0014 30.6 4.0 31 54-85 206-236 (342)
232 PRK12880 3-oxoacyl-(acyl carri 30.3 99 0.0021 29.5 5.2 45 54-107 242-286 (353)
233 PRK05788 cobalamin biosynthesi 30.2 1.1E+02 0.0024 28.8 5.4 50 53-113 207-260 (315)
234 PRK12880 3-oxoacyl-(acyl carri 30.2 86 0.0019 29.9 4.8 31 56-86 64-95 (353)
235 PRK13331 pantothenate kinase; 30.1 1.4E+02 0.0031 27.1 5.9 62 1-85 7-69 (251)
236 TIGR01198 pgl 6-phosphoglucono 30.1 1.9E+02 0.0042 25.7 6.8 37 245-281 11-47 (233)
237 PRK06065 acetyl-CoA acetyltran 29.5 98 0.0021 30.0 5.1 33 54-86 31-63 (392)
238 PLN03170 chalcone synthase; Pr 29.4 1.2E+02 0.0026 29.5 5.7 24 58-81 112-135 (401)
239 PRK07204 3-oxoacyl-(acyl carri 29.4 1.1E+02 0.0023 28.6 5.2 29 54-82 54-82 (329)
240 PF00857 Isochorismatase: Isoc 29.1 1.2E+02 0.0025 25.1 5.0 39 258-298 107-145 (174)
241 PF02633 Creatininase: Creatin 29.0 2E+02 0.0044 25.5 6.8 48 247-295 85-134 (237)
242 PRK13327 pantothenate kinase; 29.0 1.6E+02 0.0034 26.6 6.0 41 233-273 170-211 (242)
243 PLN03168 chalcone synthase; Pr 28.2 1.5E+02 0.0034 28.6 6.2 28 58-85 107-134 (389)
244 PRK09051 beta-ketothiolase; Pr 28.2 91 0.002 30.3 4.6 27 54-80 29-55 (394)
245 PRK09258 3-oxoacyl-(acyl carri 28.0 77 0.0017 29.6 4.1 26 54-79 239-264 (338)
246 cd00833 PKS polyketide synthas 27.9 1.1E+02 0.0024 29.4 5.2 31 54-85 279-309 (421)
247 PLN03172 chalcone synthase fam 27.9 1.4E+02 0.0031 28.9 5.9 24 58-81 108-131 (393)
248 COG0332 FabH 3-oxoacyl-[acyl-c 27.8 56 0.0012 30.9 3.0 32 54-85 54-86 (323)
249 TIGR01930 AcCoA-C-Actrans acet 27.5 1E+02 0.0022 29.8 4.8 28 54-81 23-50 (386)
250 PRK06840 hypothetical protein; 27.4 68 0.0015 30.1 3.6 24 56-79 239-262 (339)
251 PTZ00186 heat shock 70 kDa pre 27.3 2.1E+02 0.0045 30.0 7.3 61 54-120 334-395 (657)
252 KOG2531|consensus 27.2 1.7E+02 0.0037 29.1 6.1 26 3-29 11-36 (545)
253 COG4972 PilM Tfp pilus assembl 27.2 1.7E+02 0.0038 27.7 6.0 62 233-297 255-320 (354)
254 PRK07850 acetyl-CoA acetyltran 27.1 95 0.0021 30.0 4.5 26 56-81 30-55 (387)
255 PF02803 Thiolase_C: Thiolase, 26.9 99 0.0021 24.7 3.9 25 56-80 24-48 (123)
256 PLN02326 3-oxoacyl-[acyl-carri 26.9 82 0.0018 30.3 4.1 27 54-80 280-306 (379)
257 PRK09052 acetyl-CoA acetyltran 26.7 1.1E+02 0.0023 29.8 4.8 27 54-80 33-60 (399)
258 PLN03169 chalcone synthase fam 26.5 1.4E+02 0.003 28.9 5.6 33 53-85 280-312 (391)
259 PTZ00331 alpha/beta hydrolase; 26.1 3.2E+02 0.0069 23.8 7.4 39 258-298 141-179 (212)
260 cd07231 Pat_SDP1-like Sugar-De 26.1 4.2E+02 0.0091 25.1 8.4 39 252-291 57-95 (323)
261 KOG0256|consensus 25.8 80 0.0017 30.8 3.6 34 264-301 148-181 (471)
262 PLN02596 hexokinase-like 25.8 4.8E+02 0.01 26.3 9.2 81 236-320 396-487 (490)
263 PF07451 SpoVAD: Stage V sporu 25.7 2.3E+02 0.005 26.6 6.4 24 56-79 55-78 (329)
264 TIGR00749 glk glucokinase, pro 25.6 1.1E+02 0.0025 28.4 4.7 98 4-120 1-107 (316)
265 TIGR02826 RNR_activ_nrdG3 anae 25.3 2E+02 0.0044 23.6 5.6 33 263-296 62-94 (147)
266 TIGR00748 HMG_CoA_syn_Arc hydr 25.1 1E+02 0.0023 29.1 4.4 29 52-80 206-234 (345)
267 PF08541 ACP_syn_III_C: 3-Oxoa 25.0 43 0.00093 24.6 1.4 17 64-80 1-17 (90)
268 KOG2517|consensus 24.9 3.1E+02 0.0067 27.7 7.6 25 2-27 7-32 (516)
269 cd07207 Pat_ExoU_VipD_like Exo 24.9 85 0.0018 26.6 3.4 47 265-319 1-47 (194)
270 PLN02287 3-ketoacyl-CoA thiola 24.8 1.1E+02 0.0023 30.4 4.5 28 54-81 73-100 (452)
271 cd01400 6PGL 6PGL: 6-Phosphogl 24.8 1.7E+02 0.0037 25.7 5.4 37 244-280 5-41 (219)
272 cd00830 KAS_III Ketoacyl-acyl 24.7 88 0.0019 28.8 3.8 27 54-80 223-249 (320)
273 PLN02666 5-oxoprolinase 24.6 2.1E+02 0.0046 32.4 7.1 74 232-314 453-532 (1275)
274 COG1880 CdhB CO dehydrogenase/ 24.5 1.6E+02 0.0034 24.8 4.6 57 248-309 26-82 (170)
275 cd00827 init_cond_enzymes "ini 24.4 1.2E+02 0.0025 28.1 4.5 28 54-81 50-77 (324)
276 PLN02644 acetyl-CoA C-acetyltr 24.4 1.2E+02 0.0026 29.4 4.7 27 54-80 27-53 (394)
277 PRK08131 acetyl-CoA acetyltran 24.3 1.1E+02 0.0023 29.8 4.4 28 54-81 28-55 (401)
278 PF01182 Glucosamine_iso: Gluc 24.3 98 0.0021 26.8 3.7 36 245-280 4-39 (199)
279 TIGR03614 RutB pyrimidine util 24.2 2.7E+02 0.0058 24.5 6.6 43 259-304 147-189 (226)
280 PRK13322 pantothenate kinase; 24.1 2.1E+02 0.0046 25.7 6.0 41 233-273 176-217 (246)
281 PTZ00280 Actin-related protein 24.0 80 0.0017 30.7 3.4 27 263-289 313-339 (414)
282 KOG0797|consensus 24.0 1.7E+02 0.0038 29.4 5.6 57 4-78 278-334 (618)
283 PLN03173 chalcone synthase; Pr 23.9 2.2E+02 0.0048 27.6 6.4 24 58-81 108-131 (391)
284 PRK00292 glk glucokinase; Prov 23.8 2.6E+02 0.0057 25.8 6.8 48 241-288 232-283 (316)
285 PRK04262 hypothetical protein; 23.8 1E+02 0.0022 29.1 4.1 27 54-80 53-79 (347)
286 PRK13321 pantothenate kinase; 23.8 2.1E+02 0.0046 25.7 6.0 40 233-272 184-224 (256)
287 TIGR02446 FadI fatty oxidation 23.7 83 0.0018 31.0 3.5 28 54-81 33-60 (430)
288 PLN02929 NADH kinase 23.6 2.1E+02 0.0046 26.7 5.9 53 52-112 31-95 (301)
289 TIGR00748 HMG_CoA_syn_Arc hydr 23.6 1.1E+02 0.0024 29.0 4.2 28 53-80 51-78 (345)
290 PTZ00466 actin-like protein; P 23.6 79 0.0017 30.5 3.3 26 263-288 299-324 (380)
291 PRK13318 pantothenate kinase; 23.5 2.2E+02 0.0047 25.7 6.0 41 233-273 184-225 (258)
292 PF05014 Nuc_deoxyrib_tr: Nucl 23.4 1.6E+02 0.0036 22.6 4.5 31 267-297 2-34 (113)
293 PF10116 Host_attach: Protein 23.4 2.6E+02 0.0057 22.4 5.9 44 244-287 72-115 (138)
294 PF05908 DUF867: Protein of un 23.3 1E+02 0.0022 26.9 3.5 28 264-293 104-131 (194)
295 PRK08313 acetyl-CoA acetyltran 23.3 84 0.0018 30.4 3.4 33 54-86 26-58 (386)
296 TIGR03281 methan_mark_12 putat 23.3 1.4E+02 0.0031 28.0 4.6 45 262-314 262-309 (326)
297 PF14639 YqgF: Holliday-juncti 23.2 4.3E+02 0.0094 21.8 12.3 29 2-31 6-38 (150)
298 PLN03171 chalcone synthase-lik 23.2 1.9E+02 0.0042 28.0 5.9 32 57-88 113-145 (399)
299 PRK08170 acetyl-CoA acetyltran 23.1 1.4E+02 0.003 29.3 4.9 27 54-80 29-55 (426)
300 smart00268 ACTIN Actin. ACTIN 22.9 1E+02 0.0023 29.2 4.0 26 264-289 293-318 (373)
301 PRK07515 3-oxoacyl-(acyl carri 22.7 85 0.0018 30.0 3.3 27 54-80 271-297 (372)
302 COG4972 PilM Tfp pilus assembl 22.5 6.8E+02 0.015 23.9 9.5 110 1-120 193-328 (354)
303 cd07206 Pat_TGL3-4-5_SDP1 Tria 22.4 5.8E+02 0.013 23.8 8.6 39 252-291 58-96 (298)
304 cd00826 nondecarbox_cond_enzym 22.1 1.4E+02 0.0031 28.8 4.7 28 54-81 25-52 (393)
305 PRK13301 putative L-aspartate 22.0 5E+02 0.011 23.9 7.9 37 261-297 85-121 (267)
306 cd00830 KAS_III Ketoacyl-acyl 22.0 1.7E+02 0.0037 26.9 5.1 28 54-81 52-79 (320)
307 KOG4417|consensus 21.9 3.5E+02 0.0076 23.9 6.4 74 2-81 43-123 (261)
308 PRK05952 3-oxoacyl-(acyl carri 21.7 1.3E+02 0.0029 29.0 4.4 29 55-84 255-283 (381)
309 PF13382 Adenine_deam_C: Adeni 21.7 3.6E+02 0.0077 22.9 6.5 47 13-69 90-136 (171)
310 cd00825 decarbox_cond_enzymes 21.6 1.7E+02 0.0036 27.0 5.0 27 54-80 205-231 (332)
311 TIGR01918 various_sel_PB selen 21.6 3.8E+02 0.0081 26.4 7.3 43 73-118 336-378 (431)
312 COG2441 Predicted butyrate kin 21.5 1.3E+02 0.0029 27.9 4.0 50 244-293 255-308 (374)
313 PF07066 DUF3882: Lactococcus 21.4 4.8E+02 0.01 21.7 7.7 56 2-69 3-63 (159)
314 PLN03170 chalcone synthase; Pr 21.4 3E+02 0.0065 26.7 6.8 31 52-84 279-309 (401)
315 PTZ00452 actin; Provisional 21.4 98 0.0021 29.8 3.4 26 263-288 294-319 (375)
316 TIGR03150 fabF beta-ketoacyl-a 21.4 1.8E+02 0.004 27.8 5.4 29 56-85 277-305 (407)
317 PRK13410 molecular chaperone D 21.3 2.7E+02 0.0059 29.2 6.8 61 53-119 308-369 (668)
318 COG1077 MreB Actin-like ATPase 21.3 7.2E+02 0.016 23.7 14.8 62 233-298 247-316 (342)
319 PRK11609 nicotinamidase/pyrazi 21.2 2.1E+02 0.0045 24.8 5.3 38 259-298 138-175 (212)
320 PRK08242 acetyl-CoA acetyltran 21.0 1.5E+02 0.0032 28.9 4.6 26 56-81 32-57 (402)
321 PF00205 TPP_enzyme_M: Thiamin 21.0 1.5E+02 0.0032 23.6 3.9 34 263-296 12-45 (137)
322 PRK12879 3-oxoacyl-(acyl carri 20.9 2E+02 0.0043 26.6 5.3 33 54-86 55-88 (325)
323 PLN02836 3-oxoacyl-[acyl-carri 20.9 1.7E+02 0.0038 28.7 5.1 30 54-84 299-328 (437)
324 TIGR00747 fabH 3-oxoacyl-(acyl 20.9 1.3E+02 0.0028 27.8 4.1 26 54-79 219-244 (318)
325 KOG0100|consensus 20.8 1.1E+02 0.0024 29.9 3.4 57 260-321 360-416 (663)
326 PRK06501 3-oxoacyl-(acyl carri 20.8 1.5E+02 0.0033 28.9 4.7 29 55-84 290-318 (425)
327 PRK09185 3-oxoacyl-(acyl carri 20.7 1.9E+02 0.004 27.9 5.2 29 56-85 262-290 (392)
328 PLN03172 chalcone synthase fam 20.7 1.8E+02 0.004 28.2 5.2 32 52-85 275-306 (393)
329 PRK06840 hypothetical protein; 20.5 1.1E+02 0.0024 28.6 3.6 32 54-85 55-88 (339)
330 TIGR01826 CofD_related conserv 20.3 85 0.0018 29.5 2.6 29 266-297 2-30 (310)
331 COG0145 HyuA N-methylhydantoin 20.1 3.5E+02 0.0076 28.4 7.3 21 1-21 2-22 (674)
332 PRK07910 3-oxoacyl-(acyl carri 20.1 1.7E+02 0.0037 28.5 4.9 24 56-79 288-311 (418)
333 KOG0103|consensus 20.0 1E+03 0.022 25.0 18.5 205 82-316 144-381 (727)
334 PRK13928 rod shape-determining 20.0 7.2E+02 0.016 23.1 13.9 87 56-148 76-166 (336)
335 PRK13324 pantothenate kinase; 20.0 2.9E+02 0.0063 25.1 6.0 40 234-273 185-225 (258)
No 1
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-72 Score=510.97 Aligned_cols=335 Identities=49% Similarity=0.861 Sum_probs=312.9
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|++|||||||+++++++++++ + |++..+.+|++.|.+|+|++|+.++++|.+.++..++++|+++|++++|||.||++
T Consensus 1 m~iLGIEtScDeT~vaIv~~~-~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T 78 (342)
T COG0533 1 MIILGIETSCDETGVAIVDEE-K-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVT 78 (342)
T ss_pred CeEEEEEcccccceeEEEecc-C-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEe
Confidence 899999999999999999999 4 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394 81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD 160 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~ 160 (339)
.|||...+|+||..+||+||..+++|+++|+|+.+|+++++++.+. .+|+++++++||||+++.+++.+++++++++.|
T Consensus 79 ~gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~~~-~~p~v~LlVSGGHTqli~~~~~g~y~ilGeTlD 157 (342)
T COG0533 79 AGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLETGL-AFPPVALLVSGGHTQLIAVRGIGRYEVLGETLD 157 (342)
T ss_pred cCCCchhHHHHHHHHHHHHHHHhCCCEeecchHHHHHHHHHhccCC-CCCcEEEEEecCceEEEEEcCCCcEEEEeeech
Confidence 9999999999999999999999999999999999999999998763 479999999999999999998899999999999
Q ss_pred CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhcc--ccccccHHHH
Q psy9394 161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL--DSLKKEKANI 238 (339)
Q Consensus 161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~di 238 (339)
.++|..||++|++||++||||+.+|.+|..|++..+.||+|+...++++||||||+|++.+.+++... +....+++||
T Consensus 158 dA~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~di 237 (342)
T COG0533 158 DAAGEAFDKVARLLGLGYPGGPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDI 237 (342)
T ss_pred hhhhHHHHHHHHHhCCCCCCcHHHHHHHhcCCCCceeCCccccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHHH
Confidence 99999999999999999999999999999998767888887655556899999999999999886532 1223457889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHh
Q psy9394 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIEN 318 (339)
Q Consensus 239 Aa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~ 318 (339)
|++||+++.+.|++.++|+.++++.+.++++|||++|+.|++++.++....|+++|+||..+|+|||+|||++++.++++
T Consensus 238 a~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 238 AASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred cCCCCCCcccccccCCCCCCC
Q psy9394 319 NYKSESNYEFNIKPQWKINKI 339 (339)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~ 339 (339)
|.+.++ .+++++|||+++++
T Consensus 318 g~~~~~-~~~~~~~r~~~~~~ 337 (342)
T COG0533 318 GRFISP-LDVNVRPRWRLDEV 337 (342)
T ss_pred CCCCCC-cccccCCCCchhhc
Confidence 987652 89999999999974
No 2
>PRK09604 UGMP family protein; Validated
Probab=100.00 E-value=6.5e-68 Score=498.79 Aligned_cols=329 Identities=54% Similarity=0.928 Sum_probs=301.9
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|+|||||||++++++||++++ ++++++.+.++.+.+++|+|..|+.+.++|.+.++++++++|+++|++++|||.|+|+
T Consensus 1 m~iLgIdTS~~~~sval~~~~-~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt 79 (332)
T PRK09604 1 MLILGIETSCDETSVAVVDDG-RGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVT 79 (332)
T ss_pred CeEEEEEccccceEEEEEECC-CcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 999999999999999999876 5799888777777788999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394 81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD 160 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~ 160 (339)
.|||+|||+|+|+.+||+|+..+++|+++|+||++|++++++.+++ ++|++++++|||++.++.+.+.+++++++++.+
T Consensus 80 ~GPG~~tglrvg~~~Ak~La~~~~ipl~~v~h~~~ha~~a~~~s~~-~~~~lvl~vsGG~s~~~~~~~~~~~~~l~~t~d 158 (332)
T PRK09604 80 AGPGLVGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFLEEEP-EFPFLALLVSGGHTQLVLVKGIGDYELLGETLD 158 (332)
T ss_pred cCCCcHHhHHHHHHHHHHHHHHhCCCEEeecCHHHHHHhhhhccCC-CCCEEEEEecCCccEEEEEcCCCcEEEccccCC
Confidence 9999999999999999999999999999999999999999999987 368999999999999998887789999999889
Q ss_pred CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHH
Q psy9394 161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240 (339)
Q Consensus 161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa 240 (339)
.|+|.+||+++++||+.+++|+++|+||+||++..+++|.++ ..++++|+|+++++.+.++++.. ..++.+||+
T Consensus 159 ~slG~~yd~~t~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~-~~~~~~~sfsg~~~~~~~~~~~~-----~~~~~~iA~ 232 (332)
T PRK09604 159 DAAGEAFDKVAKLLGLGYPGGPAIDKLAKQGDPDAFKFPRPM-DRPGLDFSFSGLKTAVLNTIEKS-----EQTKADIAA 232 (332)
T ss_pred chhhHHHHHHHHHcCCCCCCcHHHHHHHHhCCCCeEeCCccc-cCCCccEecCcHHHHHHHHHHhc-----CCCHHHHHH
Confidence 999999999999999999999999999999987545566555 32467899999988777766531 245899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 241 ~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
++|+++++.++++++++.+++++++||++||||+|+.++++|.+.++++++++|+||+.||||||+|||++++.+++.|.
T Consensus 233 s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g~ 312 (332)
T PRK09604 233 SFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAGE 312 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999997
Q ss_pred CCCCCcccccccCCCCCCC
Q psy9394 321 KSESNYEFNIKPQWKINKI 339 (339)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~ 339 (339)
.++ .++.++|||+++++
T Consensus 313 ~~~--~~~~~~~~~~~~~~ 329 (332)
T PRK09604 313 FSD--LDLNARPRWPLDEL 329 (332)
T ss_pred CCC--CccccCCCCCcccc
Confidence 766 67999999999875
No 3
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=100.00 E-value=6.4e-67 Score=486.75 Aligned_cols=326 Identities=28% Similarity=0.511 Sum_probs=296.0
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccC-CccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYG-GVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
|+||||||||+++|+||++++ ++++++.+.+|. .+|+ |++|+.+.+.|.+.++++++++|+++|++++|||.|+|
T Consensus 1 ~~iLgIETScd~tsvAl~~~~-~~il~~~~~sq~---~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iav 76 (345)
T PTZ00340 1 FLALGIEGSANKLGVGIVTSD-GEILSNVRETYI---TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICY 76 (345)
T ss_pred CeEEEEEccchhhEEEEEECC-CcEEEEEEeecc---ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 899999999999999999864 469988877774 6788 99999999999999999999999999999999999999
Q ss_pred eCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeecc
Q psy9394 80 TRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETL 159 (339)
Q Consensus 80 ~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~ 159 (339)
+.|||+||+||||+.+||+|+..+++|+++|+|+++|++++++.++. ++| ++++++||||+++. .+.+++++++++.
T Consensus 77 t~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~l~~~~-~~P-l~LlVSGGhT~l~~-~~~~~~~ilG~T~ 153 (345)
T PTZ00340 77 TKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGA-ENP-VVLYVSGGNTQVIA-YSEHRYRIFGETI 153 (345)
T ss_pred ecCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHhhccCC-CCC-eEEEEeCCceEEEE-ecCCeEEEEEeec
Confidence 99999999999999999999999999999999999999999997764 478 99999999999998 5668999999999
Q ss_pred CCcchhhhHHHHhHcCCC-CC-cHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhcc-----c---
Q psy9394 160 DDAAGDTFDKIAKMLDLG-YP-GGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL-----D--- 229 (339)
Q Consensus 160 ~~s~G~~~d~va~~LG~~-~~-gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-----~--- 229 (339)
|.++|+.||+++++||++ || ||+.+|.+|..|++ .+.+|.++ ++++|||+|++|++.+++++.+. +
T Consensus 154 Dda~Gea~DKvar~LGL~~yp~gGp~iE~lA~~g~~-~~~~P~~~---~~~dfSFSGlkTav~~~i~~~~~~~~~~~~~~ 229 (345)
T PTZ00340 154 DIAVGNCLDRFARLLNLSNDPAPGYNIEQLAKKGKN-LIELPYVV---KGMDMSFSGILTYIEDLVEHPQFKDVVSEIVP 229 (345)
T ss_pred ccchhHHHHHHHHHhCCCCCCCChHHHHHHHhhCCC-ccCCCCCC---CCCcEECccHHHHHHHHHHhcccccccccccc
Confidence 999999999999999999 78 99999999988854 56677765 46899999999999998875321 0
Q ss_pred c-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHH
Q psy9394 230 S-LKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMI 308 (339)
Q Consensus 230 ~-~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~ai 308 (339)
+ ....+.|||++||+++++.|++.++++.++++.++|+++|||+.|+.|+++|.+.++++++++|+||+.+|+|||+||
T Consensus 230 ~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~~ctDNaaMI 309 (345)
T PTZ00340 230 PEEEFFTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERYCIDNGAMI 309 (345)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChHhhhhhHHHH
Confidence 0 023478999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcc-cccccCCCCCCC
Q psy9394 309 AFAGAMRIENNYKSESNYE-FNIKPQWKINKI 339 (339)
Q Consensus 309 G~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 339 (339)
|++++.+++.|.+++ ++ ++++|+|+++++
T Consensus 310 a~~g~~~~~~g~~~~--~~~~~~~~~~~l~~~ 339 (345)
T PTZ00340 310 AYAGLLEYLSGGFTP--LKDATVTQRFRTDEV 339 (345)
T ss_pred HHHHHHHHHcCCCCC--hhhcccccCCcccee
Confidence 999999999998888 55 899999999874
No 4
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=100.00 E-value=2.9e-63 Score=463.57 Aligned_cols=313 Identities=55% Similarity=0.910 Sum_probs=281.1
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
||+||||++++++||++++ ++++++.+.+++++|++|+|++|+.+.++|.+.++++++++|+++|++++|||.|+|+.|
T Consensus 1 iLaIdTs~~~~sval~~~~-~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~G 79 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDG-KGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAG 79 (314)
T ss_pred CEEEECcccceEEEEEECC-ceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 6999999999999999977 348888887777789999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCC
Q psy9394 83 PGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDD 161 (339)
Q Consensus 83 PG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~ 161 (339)
||+|||+|+|+.+||+|+..+++|+++|+||++|++++++.+ ++ .+|++++++|||++.++...+.+++++++++.+.
T Consensus 80 PGsftglrig~~~Ak~la~~~~~p~~~v~h~~aha~~a~~~s~~~-~~~~lvL~vdgg~s~~~~~~~~~~~~~l~~t~d~ 158 (314)
T TIGR03723 80 PGLIGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFLEDKPL-EFPFLALLVSGGHTQLVLVKGVGDYELLGETLDD 158 (314)
T ss_pred CChHHhHHHHHHHHHHHHHHhCCCEEecccHHHHHHhhhhccCCC-CCCEEEEEEeCCCcEEEEEecCCeEEEeeccCCc
Confidence 999999999999999999999999999999999999999986 54 4688999999999998888878899999998899
Q ss_pred cchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHH
Q psy9394 162 AAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARG 241 (339)
Q Consensus 162 s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~ 241 (339)
|+|.+||+++++||+++++|+++|+||+|+++..+++|.++....+++|+|+++++.+.++++..........+.+||++
T Consensus 159 SlG~~yd~vt~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~~sfsg~~~~~~~~~~~~~~~~~~~~~~~iA~~ 238 (314)
T TIGR03723 159 AAGEAFDKVARLLGLGYPGGPAIDKLAKEGDPKAFKFPRPMTGRPGLDFSFSGLKTAVLNLIEKLKQKGEELDKADIAAS 238 (314)
T ss_pred hhhHHHHHHHHHcCCCCCCcHHHHHHHhhCCCCEeECChhhccCCCCCEecccHHHHHHHHHHhcccCccccCHHHHHHH
Confidence 99999999999999999999999999999987545556555433456899999988777776643111112457899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHH
Q psy9394 242 FLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIE 317 (339)
Q Consensus 242 ~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~ 317 (339)
+|.++++.++++++++.+++++++||++||||+|+.++++|.+.+++.++++|+||..||||||+|||++++.+++
T Consensus 239 ~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag~~~~~ 314 (314)
T TIGR03723 239 FQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAGYERLK 314 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998889999999999999999999999998764
No 5
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=100.00 E-value=7.2e-63 Score=459.96 Aligned_cols=305 Identities=52% Similarity=0.857 Sum_probs=272.8
Q ss_pred EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP 83 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gP 83 (339)
||||||++++++||++++ ++++++.+.++.+.|.+|+|+.|+.+.+.|.+.++++++++|+++|++++|||.|+++.||
T Consensus 1 LaidTs~~~~sval~~~~-~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GP 79 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEE-GNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGP 79 (305)
T ss_pred CEEecCccceEEEEEECC-CcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 699999999999999972 2699998888888899999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcc
Q psy9394 84 GLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAA 163 (339)
Q Consensus 84 G~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~ 163 (339)
|+|||+|+|+.+||+|+..+++|+++|+||++|++++++.++-..+|++++++|||++.++..++.+++++++++.+.|+
T Consensus 80 G~~tglrvg~~~Ak~la~~~~~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~t~l~~~~~~~~~~~l~~t~d~S~ 159 (305)
T TIGR00329 80 GLGGSLRVGATFARSLALSLDKPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAV 159 (305)
T ss_pred CchhhHHHHHHHHHHHHHHhCCCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcCCceEEEEEeCCCcEEEeeeecCchh
Confidence 99999999999999999999999999999999999999987722379999999999999999987779999999999999
Q ss_pred hhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy9394 164 GDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFL 243 (339)
Q Consensus 164 G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q 243 (339)
||+||+++++||+.||||++||++|.++++..++++.++.....++|+|+++++++.+.+.+........++.+||++||
T Consensus 160 GrlfD~va~lLGl~y~g~~~iE~lA~~~~~~~~~~~~~~~~~~~~~~s~sgl~~~~~~~~~~~~~~~~~~~~~~iAasfq 239 (305)
T TIGR00329 160 GEAFDKVARLLGLGYPGGPKIEELAKKGDKLPFYFPLPYTVKPMLDFSFSGLKTAALRKIEKLKKNLNEATKEDIAYSFQ 239 (305)
T ss_pred hHHHHHHHHHcCCCCCChHHHHHHHhhCCCccccCCCccccCCCCcEEchHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 99999999999999999999999999887644555555443334579999998877765554211111245799999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHH
Q psy9394 244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIA 309 (339)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG 309 (339)
+++++.++++++++.+++++++||++||||+|+.|+++|.+.+++.++++|+||+.||||||+|||
T Consensus 240 ~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~DnGiMIa 305 (305)
T TIGR00329 240 ETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPLEFCSDNGAMIA 305 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCccHHhcC
Confidence 999999999999999999999999999999999999999999988899999999999999999986
No 6
>PRK14878 UGMP family protein; Provisional
Probab=100.00 E-value=3e-62 Score=458.70 Aligned_cols=317 Identities=32% Similarity=0.535 Sum_probs=282.9
Q ss_pred EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP 83 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gP 83 (339)
||||||++++++||++++ +++++++.++ |.+|+|..|+.+.++|.+.++.+++++|+++|++++|||.|+++.||
T Consensus 1 l~iets~~~~s~al~~~~--~i~~~~~~~~---~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gP 75 (323)
T PRK14878 1 LGIESTAHTLGVGIVKED--KVLANVRDTY---VPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGP 75 (323)
T ss_pred CEEecCCcccEEEEEECC--EEEEEEEEec---ccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 699999999999999977 5888765443 88999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcc
Q psy9394 84 GLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAA 163 (339)
Q Consensus 84 G~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~ 163 (339)
|++|++|+|..+||+|+..+++|+++|+||++|++++++.+++ ++| +++++|||++.++..+ .+++++++++.+.|+
T Consensus 76 G~~~~lrvg~~~Ak~la~~~~~p~~~v~h~~~Ha~sa~~~s~~-~~~-l~l~vsGg~t~i~~~~-~~~~~~~~~t~d~s~ 152 (323)
T PRK14878 76 GLGPALRVGATAARALALKYNKPLVPVNHCIAHIEIGRLTTGA-KDP-VVLYVSGGNTQVLAFR-GGRYRVFGETLDIAI 152 (323)
T ss_pred CcccchHHHHHHHHHHHHHhCCCccccchHHHHHHhhhhcCCC-CCC-EEEEEEcCCeEEEEEe-CCeEEEeeeecCcch
Confidence 9999999999999999999999999999999999999999987 466 8999999999998887 568999999999999
Q ss_pred hhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy9394 164 GDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFL 243 (339)
Q Consensus 164 G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q 243 (339)
||+||++|++||+.++|++.+|.+|..+++ .+.+|.++. +++++|+++++++.+.+.+. .+..+||++||
T Consensus 153 Gr~fD~vA~~LGl~~~G~~~lE~~a~~~~~-~~~~p~~~~---~~~~~fsgl~~~v~~~i~~~------~~~~diAa~fq 222 (323)
T PRK14878 153 GNALDTFAREVGLAPPGGPAIEKCAEKGEK-YIELPYVVK---GQDLSFSGLLTAALRLYKGK------ERLEDVCYSLR 222 (323)
T ss_pred hHHHHHHHHHcCCCCCChhHHHHHHhhCCC-cCcCCccCc---CCCCcchHHHHHHHHHHHcC------CCHHHHHHHHH
Confidence 999999999999999999999999876643 233454432 34688999988777666432 45689999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q psy9394 244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSE 323 (339)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~~ 323 (339)
+++++.++++++++.+++++++||++||||+|+.+++++.+.+++.++++|+||..||||||+|||++++.+++.+.+.+
T Consensus 223 ~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimIA~~g~~~~~~~~~~~ 302 (323)
T PRK14878 223 ETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMIAYTGLLAYKHGVTIP 302 (323)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999888887665
Q ss_pred CCcccccccCCCCCCC
Q psy9394 324 SNYEFNIKPQWKINKI 339 (339)
Q Consensus 324 ~~~~~~~~~~~~~~~~ 339 (339)
. .+.++.|+|+++++
T Consensus 303 ~-~~~~~~~~~~~~~~ 317 (323)
T PRK14878 303 P-EESFVRQRWRLDEV 317 (323)
T ss_pred h-hhccccCCCccccc
Confidence 2 34889999999874
No 7
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=100.00 E-value=4.8e-62 Score=457.91 Aligned_cols=318 Identities=32% Similarity=0.568 Sum_probs=280.0
Q ss_pred EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP 83 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gP 83 (339)
||||||++++|+||++++ ++|++.++.++ |++|+|..|+.+.+.|.+.++.++++||+++|+++.|||.|+++.||
T Consensus 1 Lgiets~~~~s~al~~~~-~~i~~~~~~~~---~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gP 76 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDED-GEILANVSDTY---VPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGP 76 (322)
T ss_pred CEEeccccceEEEEEECC-CeEEEEEEeec---ccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 799999999999999955 36887665443 78899999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcc
Q psy9394 84 GLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAA 163 (339)
Q Consensus 84 G~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~ 163 (339)
|++|++|+|..+||+|+..+++|+++|+||+||++++++.+++ ++| +++++|||++.++..+ .+++++++++.+.|+
T Consensus 77 g~~~~l~vg~~~ak~la~~~~~p~~~v~h~~aHa~sa~~~s~~-~~~-lvL~vsGg~t~l~~~~-~~~~~~l~~t~d~s~ 153 (322)
T TIGR03722 77 GLGPCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRLTTGA-KDP-VVLYVSGGNTQVIAYR-NGRYRVFGETLDIGL 153 (322)
T ss_pred chHHhHHHHHHHHHHHHHHhCCCeechhhHHHHHHhhhccCCC-CCC-eEEEEeCCceEEEEEe-CCeEEEEEEeccccc
Confidence 9999999999999999999999999999999999999999987 467 9999999999998887 468999999989999
Q ss_pred hhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy9394 164 GDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFL 243 (339)
Q Consensus 164 G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q 243 (339)
||+||++|++||+.++||+++|.+|..++. .+++|+++ .+++++|+++++++.+.+.+. .++.|||++||
T Consensus 154 GrlfDava~~LGl~~~G~~~le~la~~~~~-~~~~~~~~---~~~~~~fs~l~~~~~~~~~~~------~~~~diAasfq 223 (322)
T TIGR03722 154 GNALDKFAREVGLGHPGGPKIEELAEKGKE-YIELPYTV---KGMDLSFSGLLTAALRAYKKG------ARLEDVCYSLQ 223 (322)
T ss_pred hHHHHHHHHHhCCCCCChHHHHHHHhcCCC-cccCCccC---CCCcCchHHHHHHHHHHHHcC------CCHHHHHHHHH
Confidence 999999999999998899999999877643 23344433 223578888877666665432 45799999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q psy9394 244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSE 323 (339)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~~ 323 (339)
+++++.++++++++.+++++++|||+||||+|+.+|++|.+.+++.++++|+||+.||||||+|||++++..++.+...+
T Consensus 224 ~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig~~g~~~~~~~~~~~ 303 (322)
T TIGR03722 224 ETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIAYTGLLMYKHGVTIP 303 (322)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999998988877776654
Q ss_pred CCcccccccCCCCCCC
Q psy9394 324 SNYEFNIKPQWKINKI 339 (339)
Q Consensus 324 ~~~~~~~~~~~~~~~~ 339 (339)
. .+.++.|+|+++++
T Consensus 304 ~-~~~~~~~~~~~~~~ 318 (322)
T TIGR03722 304 V-EESRVRQRWRTDEV 318 (322)
T ss_pred h-hhccccCCCccccc
Confidence 2 34789999999874
No 8
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=100.00 E-value=2e-60 Score=476.70 Aligned_cols=320 Identities=30% Similarity=0.521 Sum_probs=285.2
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|+||||||||+++|+||++++ ++++++.+.+ +|++|+|++|+.+.++|.+.++++++++|+++|+++.|||.|||+
T Consensus 1 m~il~iets~~~~s~a~~~~~-~~~~~~~~~~---~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~ 76 (535)
T PRK09605 1 MIVLGIEGTAWKTSAGIVDSD-GDVLFNESDP---YKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFS 76 (535)
T ss_pred CEEEEEEccccceEEEEEeCC-CcEEEEEEee---ccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEC
Confidence 999999999999999999964 3688876543 689999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394 81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD 160 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~ 160 (339)
.|||++|+||+|+.+||+|+..+++|+++|+||+||++++++.+++ ++| +++++|||++.++..++ +++++++++.+
T Consensus 77 ~gPg~~~~l~vg~~~ak~la~~~~~~~~~v~h~~aH~~~a~~~~~~-~~~-l~l~vsGg~t~~~~~~~-~~~~~l~~t~d 153 (535)
T PRK09605 77 QGPGLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIGRLTTGA-EDP-VTLYVSGGNTQVLAYLN-GRYRVFGETLD 153 (535)
T ss_pred CCCCcHhhHHHHHHHHHHHHHHhCCCeecccHHHHHHHHhhhccCC-CCC-eEEEEecCCeEEEEEcC-CeEEEEEeecc
Confidence 9999999999999999999999999999999999999999999887 467 99999999999998887 78999999999
Q ss_pred CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHH
Q psy9394 161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240 (339)
Q Consensus 161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa 240 (339)
.|+|++||++|++||+.++|++++|++|.++++ .+.+|.++ ..++|+|+++.+++.+.+.+. .+..+||+
T Consensus 154 ~S~G~~fD~va~~Lg~~~~g~~~le~lA~~~~~-~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~------~~~~~iA~ 223 (535)
T PRK09605 154 IGVGNALDKFARHVGLPHPGGPKIEKLAKDGKK-YIDLPYVV---KGMDFSFSGLLTAAKRAYDAG------EPLEDVCY 223 (535)
T ss_pred hhhhHHHHHHHHHhCCCCCCCHHHHHHHhcCCC-cccCCCcC---CCCCEeehHHHHHHHHHHHcC------CCHHHHHH
Confidence 999999999999999999999999999998865 33445443 234688999977766655432 35689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 241 ~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
+||+++++.++++++++.+++|+++||++||||+|+.++++|.+++++.++++|+||+.||||||+|||++++.++..+.
T Consensus 224 ~~q~~l~~~l~~~~~~~~~~~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g~ 303 (535)
T PRK09605 224 SLQETAFAMLTEVTERALAHTGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAGD 303 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999998887776
Q ss_pred CCCCCcccccccCCCCCC
Q psy9394 321 KSESNYEFNIKPQWKINK 338 (339)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~ 338 (339)
..+. .+....|+|+.++
T Consensus 304 ~~~~-~~~~~~p~~~~~e 320 (535)
T PRK09605 304 TLDI-EDTRVNPNFRTDE 320 (535)
T ss_pred CCCc-ccccccCCCcccc
Confidence 4442 3577888888764
No 9
>KOG2707|consensus
Probab=100.00 E-value=1.4e-57 Score=410.39 Aligned_cols=336 Identities=37% Similarity=0.594 Sum_probs=301.8
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
++|||+|||+|+++|+++.- ++++++++.+|..+|.+|||+.|..+...|.+.+..+++++|+++|.+++|+|+|||+.
T Consensus 33 ~VLgIETSCDDTavaVVd~~-~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~ 111 (405)
T KOG2707|consen 33 KVLGIETSCDDTAVAVVDEF-SHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTR 111 (405)
T ss_pred eeeeEecccCcceeeeeccc-ccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEec
Confidence 38999999999999999876 67999988888889999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCC
Q psy9394 82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDD 161 (339)
Q Consensus 82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~ 161 (339)
|||.--+|++|+++|+++|..+++|+++|.|++|||++++.+.+..+||+++++++|||+.+....+.+++++++++.|.
T Consensus 112 gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FPFl~lLvSGGH~llvla~~~~~~~llg~TvDi 191 (405)
T KOG2707|consen 112 GPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFPFLALLVSGGHTLLVLANGVGDHELLGQTVDI 191 (405)
T ss_pred CCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcCCceeeEeeeCCceEEEEeccccceeeeeccccc
Confidence 99999999999999999999999999999999999999999875557999999999999999999999999999999999
Q ss_pred cchhhhHHHHhHcCCC------CCcHHHHHhccccCCC-CcccCCCccccCCCeeeecchHHHHHHHHHHhhcc-ccccc
Q psy9394 162 AAGDTFDKIAKMLDLG------YPGGPEISLISEFGDP-NIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL-DSLKK 233 (339)
Q Consensus 162 s~G~~~d~va~~LG~~------~~gg~~le~lA~~g~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 233 (339)
+.|+.+|++++.||+. +++|+++|.+|..++. ..+++|.|+....+|+|+|+++++...+++.+... ++...
T Consensus 192 ApGe~lDK~ar~Lgl~~~~e~~~~~g~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s 271 (405)
T KOG2707|consen 192 APGEALDKCARRLGLLGHPEDARSGGKAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLS 271 (405)
T ss_pred chHHHHHHHHHHhcCCCCccchhhhhhHHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchh
Confidence 9999999999999994 3478899999987764 46778888888888999999999999988876532 22345
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMI 308 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~ai 308 (339)
...||||++|+++++++.+.+.++.+... .+.+|++||||.|.+++.+|.....+.+...+.||+..|.|||+||
T Consensus 272 ~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMI 351 (405)
T KOG2707|consen 272 EIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMI 351 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhh
Confidence 78999999999999999999999887753 4689999999999999999999888888888889888999999999
Q ss_pred HHHHHHHHHhcC-CCC-CC-cccccccCCCCCC
Q psy9394 309 AFAGAMRIENNY-KSE-SN-YEFNIKPQWKINK 338 (339)
Q Consensus 309 G~a~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~ 338 (339)
||.+.+++++|. .+. ++ ..+..+|+|++.+
T Consensus 352 aw~Gie~l~~~r~~~~~~D~~~ir~~p~~~l~~ 384 (405)
T KOG2707|consen 352 AWTGIEMLRNGRELTSIPDIEPIRARPDNGLLE 384 (405)
T ss_pred hhHHHHHHhccccCCCccccchhhccCCCCccc
Confidence 999999999996 333 32 3478889998875
No 10
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=100.00 E-value=1.5e-47 Score=350.41 Aligned_cols=268 Identities=49% Similarity=0.811 Sum_probs=227.8
Q ss_pred ceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhc
Q psy9394 24 NLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSI 103 (339)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~ 103 (339)
+|+++.+.+|.++|.+|||++|+.+.++|.+.++++++++|++++++++|||.|+|+.|||+|||+|+|+++||+|+..+
T Consensus 1 ~vl~~~~~sq~~~~~~~gGv~P~~a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~ 80 (268)
T PF00814_consen 1 KVLSNVIASQIEIHAQYGGVVPEIASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALAL 80 (268)
T ss_dssp -EEEEEEEE--E---TTSSSSHCCHHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeeccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCCCCCcHHH
Q psy9394 104 NKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPE 183 (339)
Q Consensus 104 ~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~~~~gg~~ 183 (339)
++|+++|+|+++|+++++..++. ++| +++++||++++++...+ +.++.++.+.+.+.|..+|+++++||+.++++++
T Consensus 81 ~~Pli~v~~l~a~a~~~~~~~~~-~~P-~~~~isa~~~~vy~~~~-~~~~~~~~t~d~~~ge~~dk~~~~l~l~~~~g~~ 157 (268)
T PF00814_consen 81 NIPLIGVSHLEAHALSARLSEGL-KFP-LVLLISAGHTEVYLAEG-GDYEILGETLDDAIGEAFDKVARLLGLPYPGGPA 157 (268)
T ss_dssp T--EEEEEHHHHHHHHHHHHHTE-ESE-EEEEEECSTCEEEEEET-TEEEEECCBSSSCHHHHHHHHHHHTT--SSHHHH
T ss_pred CCCeEeeccHHHHHHhHhhhccc-cCc-eEEEEECCCccEEEEEe-eEEEeeccccccccHHHHhhHHHHhccccccCcH
Confidence 99999999999999999866442 368 99999999999999987 8899999999999999999999999999999999
Q ss_pred HHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9394 184 ISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGI 263 (339)
Q Consensus 184 le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~ 263 (339)
+|.+|..+ ..+++|.++. +++|+|+|+++++.+.++ . .+||+++|+++.+.+.+.+.++.+..+.
T Consensus 158 le~la~~~--~~~~~p~~~~---~~~~sFsG~~t~~~~~i~--------~--~~iA~s~q~~~~~~l~~~~~~a~~~~~~ 222 (268)
T PF00814_consen 158 LEKLASEG--EAFKFPRPLK---NCDFSFSGLKTAVYRLIE--------K--ADIAASFQEAIADHLAKKAPRALEKPRA 222 (268)
T ss_dssp HHHHHCT---S------SEE---TTEEEEHHHHHHHHHHHH--------T--HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC--Ccceecccee---eeeEEEEcccHHHHHHhh--------h--hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999887 3566776653 378999999988877764 1 9999999999999999999999999999
Q ss_pred CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 264 NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 264 ~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
+.|+++|||+.|+.+++.+.+...+ ++++++||+.+|.||++||||
T Consensus 223 ~~lv~~GGVaaN~~lr~~l~~~~~~-~~~~~~p~~~y~~Dnaamiaw 268 (268)
T PF00814_consen 223 KSLVVSGGVAANKYLREGLRKLCSE-GIKLFFPPPRYCTDNAAMIAW 268 (268)
T ss_dssp SEEEEESGGGGHHHHHHHHHHHHHH-TSEEE---HHHCSS-HHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHc-CCEEEcCCHHHcchhHHHhCc
Confidence 9999999999999999999998888 899999998899999999997
No 11
>KOG2708|consensus
Probab=100.00 E-value=9e-45 Score=310.54 Aligned_cols=327 Identities=27% Similarity=0.472 Sum_probs=293.6
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|+.||++.|.+...+.++.++ ++++..|.+.+ .+|-.|.+|....++|...+..+++..|++++++.+|||.|+++
T Consensus 2 ~ialG~EGSANKlGvGiv~~~--~iLaN~R~TYi--tPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~icyT 77 (336)
T KOG2708|consen 2 MIALGLEGSANKLGVGIVRDG--KILANPRHTYI--TPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCICYT 77 (336)
T ss_pred ceEEecccccccceeeEEecc--eeecCcccccc--CCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEc
Confidence 678999999999999999999 79999887764 35556999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394 81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD 160 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~ 160 (339)
.|||....|-+....|+.++.-|++|+++|+|..+|+...+.-.+- +.| +++.++||.++++...+ .++++++.+.+
T Consensus 78 KGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR~iTgA-~nP-vvLYvSGGNTQvIAYse-~rYrIFGETlD 154 (336)
T KOG2708|consen 78 KGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGREITGA-QNP-VVLYVSGGNTQVIAYSE-KRYRIFGETLD 154 (336)
T ss_pred CCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhhhhhcceeccC-CCC-EEEEEeCCceEEEEEcc-ceeeeecceeh
Confidence 9999988899988899999999999999999999999998876653 356 78899999999998875 79999999999
Q ss_pred CcchhhhHHHHhHcCCCCC--cHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHH
Q psy9394 161 DAAGDTFDKIAKMLDLGYP--GGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238 (339)
Q Consensus 161 ~s~G~~~d~va~~LG~~~~--gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~di 238 (339)
.++|..+|.+|+.|.++.+ .|+.+|++|..|+. ..++|+. +++++.+|+++.+.+..+.++..+...+..++|+
T Consensus 155 IAvGNClDRFAR~lklsN~PsPGynieq~AK~gk~-~ieLPY~---VKGMDvSfSGiLs~ie~~a~~~~~~~~~~t~~DL 230 (336)
T KOG2708|consen 155 IAVGNCLDRFARVLKLSNDPSPGYNIEQLAKKGKN-YIELPYT---VKGMDVSFSGILSYIEDLAEELLKPSSEVTKEDL 230 (336)
T ss_pred hhhhhhHHHHHHHhcCCCCCCCCcCHHHHHHhccc-eeeccee---eeccccchHHHHHHHHHHHhhhhcccccccHHHH
Confidence 9999999999999999743 47789999999875 5677875 3577899999988877777665333345689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHh
Q psy9394 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIEN 318 (339)
Q Consensus 239 Aa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~ 318 (339)
++|+|++++.+++++.+|+....+.+.|.+.|||.+|..|.+++..+.+++|-++|-.+..+|-|||+||+|+++.++++
T Consensus 231 CySLQEtvFamLVEiTERAMAh~~s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MIA~aG~l~~~~ 310 (336)
T KOG2708|consen 231 CYSLQETVFAMLVEITERAMAHCGSKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMIAQAGLLMFRS 310 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHHHHhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccccCCCCCCC
Q psy9394 319 NYKSESNYEFNIKPQWKINKI 339 (339)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~ 339 (339)
|..+|+ -+.++.+|+++||.
T Consensus 311 G~~~~~-~es~vTQr~RTDeV 330 (336)
T KOG2708|consen 311 GARTPL-SESTVTQRYRTDEV 330 (336)
T ss_pred CCcccc-ccceeeeeeeccce
Confidence 999996 68999999999974
No 12
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-38 Score=300.32 Aligned_cols=294 Identities=18% Similarity=0.192 Sum_probs=211.9
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeE---EEEeeecccccccCCccchHHHHHHHHHHH-HHHHHHHHhCCCCCCCcCE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRS---HVICSQNLVHKEYGGVVPELAARTHIQTII-PLLSKLLKNSNLELKKIDI 76 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~---~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~-~~i~~~l~~~~i~~~did~ 76 (339)
|+||||..+.||.++||++|| +|++ +||++| +||...+| ..+++||+.+++.+.|||.
T Consensus 1 m~ILGis~~~HD~aaaLv~Dg--~iVaAv~EERftR----------------~K~~~~fP~~sv~~~L~~~~~~~~dVD~ 62 (555)
T COG2192 1 MYILGISDGYHDAAAALVRDG--EIVAAVEEERFTR----------------KKHDAGFPEQSVDYCLRLAGIELTDVDA 62 (555)
T ss_pred CEEEEeccCCCCcceEEEeCC--eEEEEehhhhhch----------------hccccCCchHHHHHHHhhccCCcccccE
Confidence 899999998899999999988 6887 467776 45555555 6899999999999999999
Q ss_pred EEEeCCCCCCchhHHHHH-----------------HHHHHH-------HhcCCCEEeecchhHHhhhccccCCCCCCcEE
Q psy9394 77 IAYTRGPGLPGSLLVGSS-----------------IACSIA-------LSINKPVIGINHLEGHLLSPFLSNNSLTFPFI 132 (339)
Q Consensus 77 ia~~~gPG~~t~lr~g~~-----------------~ak~la-------~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~ 132 (339)
|++..-|+.. --|+... +.+..+ ..+..++..+.||.|||+|++++|||. +++
T Consensus 63 va~~~~~~~~-~~r~~~~yl~~~~~~~~~~~~k~~l~~~~~~l~~~~~~~~~~kv~~~eHH~aHAasAf~~SpF~--~a~ 139 (555)
T COG2192 63 VAVAGKPSAK-FRRILAGYLKRKPELFGKLLLKKLLKRLLAELDQFFGKGLPVKVLFVEHHLAHAASAFFTSPFE--EAL 139 (555)
T ss_pred EEEcCCcHHH-HHHHHHHHhhhccccccchhhHHHHHHHHHHhhhhccccCccceeechHHHHHHHHHhcCCCcc--cce
Confidence 9998656421 1121111 111111 234567899999999999999999994 588
Q ss_pred EEEEeCC---eeEEEEecCCcceEEeee-ccCCcchhhhHHHHhHcCCC-CCcHHHHHhccccCCCCcccCCC--ccccC
Q psy9394 133 ALLVSGG---HTQLIKVNSIGNYFLLGE-TLDDAAGDTFDKIAKMLDLG-YPGGPEISLISEFGDPNIYKFPR--PMLYT 205 (339)
Q Consensus 133 ~l~~dGg---~~~~~~~~~~~~~~~~~~-~~~~s~G~~~d~va~~LG~~-~~gg~~le~lA~~g~~~~~~~~~--~l~~~ 205 (339)
++++||. .+..+.....+++..+.+ ...+|+|.||.++|.+|||+ .+++.++|+||+||++. |.... .+...
T Consensus 140 vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY~~~T~~lGf~~n~~EgKvMgLAaYG~p~-y~~~~~d~l~~~ 218 (555)
T COG2192 140 VLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLFYAAFTELLGFKPNSDEGKVMGLAAYGDPN-YDLSLLDLLREK 218 (555)
T ss_pred EEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHHHHHHHHHhCCCCCCCCccEEEeeccCCcc-cchHHHHHHhhc
Confidence 9999984 233333333366666654 45779999999999999997 56788999999999985 32110 01110
Q ss_pred CCe--eeecchHH--HH--HHHHHHh---h-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhh
Q psy9394 206 NNF--NFSFSGLK--TS--VLNVIKN---I-KLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGAN 275 (339)
Q Consensus 206 ~~~--~~~~~~l~--~~--~~~~~~~---~-~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N 275 (339)
.+. .+...-.+ .. ..+++.. . ......+.+.|||+++|..+++.+.++.+.+.+++++.+||++||||+|
T Consensus 219 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g~~~L~~AGGVAlN 298 (555)
T COG2192 219 EDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAADIAASAQAYLEELVLEMLRYLREETGEDNLALAGGVALN 298 (555)
T ss_pred cccceeccHHHHHhccccceeccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceEEccceeee
Confidence 000 11100000 00 0001111 0 0123466889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCc-EEEccCCCCCChhHHHHHHHHHHHHHhcCC
Q psy9394 276 KQLRKKLNILKKQYNY-TVFYPKKEFCTDNGAMIAFAGAMRIENNYK 321 (339)
Q Consensus 276 ~~l~~~l~~~l~~~~~-~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~ 321 (339)
|++|.++.+. ..+ +||||| ++||+|.|+|+|++.+.+.+..
T Consensus 299 v~~N~~~l~~---~~f~dlfV~P--a~gD~G~AvGAAl~~~~~~~~~ 340 (555)
T COG2192 299 VKANGKLLRR---GLFEDLFVQP--AMGDAGLAVGAALAVKRELGGA 340 (555)
T ss_pred eeehHhHhhc---ccCceeEecC--CCCCcchHHHHHHHHHHHhcCC
Confidence 9999777664 234 899999 8999999999999987776653
No 13
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=100.00 E-value=3.1e-35 Score=298.85 Aligned_cols=253 Identities=18% Similarity=0.220 Sum_probs=199.1
Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHH
Q psy9394 37 HKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGH 116 (339)
Q Consensus 37 ~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aH 116 (339)
-++|+||+.+..+.++++.....+..+++ + +++.|+||.||+|+|. .++..+++|++.||||+||
T Consensus 385 ~S~~iGDl~~~~~~~~~~~~~~~~~~l~~---~---~p~~i~~D~HP~y~st---------~~a~~~~~~~~~vQHH~AH 449 (711)
T TIGR00143 385 LSQHIGDLSVYETYKFFKEALNFFLRIYD---F---EPQDIVCDLHPQYNTT---------QYAEELSLPVLRVQHHHAH 449 (711)
T ss_pred EcCcccCcCCHHHHHHHHHHHHHHHHHHC---C---CCCEEEEeCCCCchhH---------HHHHHcCCCeeeeeHHHHH
Confidence 35799999999999888888878877777 6 7999999999999853 3566679999999999999
Q ss_pred hhhccccCCCCCCcEEEEEEeCC---------eeEEEEecCC---------------------------------cc---
Q psy9394 117 LLSPFLSNNSLTFPFIALLVSGG---------HTQLIKVNSI---------------------------------GN--- 151 (339)
Q Consensus 117 a~s~~~~s~~~~~~~~~l~~dGg---------~~~~~~~~~~---------------------------------~~--- 151 (339)
+++++.+++..+.|+++++|||. ..+++..+.. .+
T Consensus 450 ~~a~mae~~l~~~~~lg~~~DGtGyG~Dg~iWGGE~l~~~~~~~~R~~hl~~~~l~GGd~a~~~p~R~a~~~l~~~~~~~ 529 (711)
T TIGR00143 450 ALAVMADAGVLEEAVIGITWDGVGYGEDGKIWGGECLLIDLGRIERLGRLEEFWLLGGDLATKYPLRILLSILLKHDLND 529 (711)
T ss_pred HHHHHHhcCCCcCCeEEEEEeCCccCCCCCeeeeEEEEEeCCceEEEeccccccCCChhHHHHHHHHHHHHHHHhCcccc
Confidence 99999999751359999999972 1233332210 00
Q ss_pred ----eEE------------------eeeccCCcchhhhHHHHhHcCC----CCCcHHHH--HhccccCCCCcccCCCccc
Q psy9394 152 ----YFL------------------LGETLDDAAGDTFDKIAKMLDL----GYPGGPEI--SLISEFGDPNIYKFPRPML 203 (339)
Q Consensus 152 ----~~~------------------~~~~~~~s~G~~~d~va~~LG~----~~~gg~~l--e~lA~~g~~~~~~~~~~l~ 203 (339)
++. ++.+.++|+|||||++|++||+ +|||++.| |.+|...... +.+|+.+.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~tSS~GRlFDaVAalLGl~~~~syEGqAa~~LE~lA~~s~~~-v~~~~~i~ 608 (711)
T TIGR00143 530 FLKRYQKYFKQEKELSVLQQALEKKINAPLTTSTGRLFDAVAAALGLCGERTYEGEAAIALEALALRSDGI-ANYPFEIK 608 (711)
T ss_pred cchhhhhcCcchHHHHHHHHHHHhCCCCcccCCCCcHHHHHHHHcCCCcccccchhhHHHHHHHHhcCCCc-cccCcccc
Confidence 000 1235689999999999999999 46776655 7777544321 12344432
Q ss_pred cCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHH
Q psy9394 204 YTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLN 283 (339)
Q Consensus 204 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~ 283 (339)
+.+++++++..++.+.+.+. .++.+||++||+++++.++++++++.++++.++|+|+||||+|+.|++.|.
T Consensus 609 ---~~~id~~~l~~~ii~~l~~g------~~~~~IAa~fh~tla~~L~~~a~~~~~~~g~~~VvLSGGVfqN~~L~~~L~ 679 (711)
T TIGR00143 609 ---NKVLDLKEFYQRFLEDLLVG------EDRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLLLERLA 679 (711)
T ss_pred ---CCccCHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHHHH
Confidence 22578888866666555433 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 284 ILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 284 ~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
+.+++.|+++|+|++.||||||+|+||+.+.
T Consensus 680 ~~L~~~g~~v~~p~~~p~nDgGislGQa~~a 710 (711)
T TIGR00143 680 KYLKGLGFQFLFHRHLPPGDGGISLGQAVAA 710 (711)
T ss_pred HHHHhCCCEEEccCCCCCCHHHHHHHHHHHh
Confidence 9998889999999999999999999998764
No 14
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-32 Score=268.47 Aligned_cols=267 Identities=20% Similarity=0.323 Sum_probs=199.0
Q ss_pred ceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHH
Q psy9394 12 DSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLV 91 (339)
Q Consensus 12 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~ 91 (339)
+..+||.+.+ +.+ -++|+||+.+....++++.....+.++++ + +.|.|+||.||.|.|.
T Consensus 407 knTf~l~k~~--~~~----------lSQ~iGdls~~~t~~~~~ea~~~~~~~~~---~---~pd~i~cDlHP~y~tt--- 465 (750)
T COG0068 407 KNTFCLLKGG--KAY----------LSQHIGDLSNLETLEFFREALRHFLKIYD---F---EPDYIVCDLHPNYNTT--- 465 (750)
T ss_pred cceEEEEECC--eEe----------eccccCcchhhhHHHHHHHHHHHHHHHhc---C---CCceEEEecCcccchh---
Confidence 3456777766 332 24589999998777666655555554444 7 4499999999999863
Q ss_pred HHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCC-CCcEEEEEEeCC----e-----eEEEEecC-------------
Q psy9394 92 GSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSL-TFPFIALLVSGG----H-----TQLIKVNS------------- 148 (339)
Q Consensus 92 g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~-~~~~~~l~~dGg----~-----~~~~~~~~------------- 148 (339)
.+|..++.|++.||||+||+++++.+++.+ .++++++.+||- + .+++..+.
T Consensus 466 ------~~A~e~~~~~~~VqHH~AH~~a~mae~~~~~~~~vi~ia~DG~GyG~dGk~WGGE~l~~d~~~~erlahl~~~~ 539 (750)
T COG0068 466 ------KYAEEFALPLLQVQHHHAHALAVMAEHGLPLDEKVIGIALDGVGYGEDGKVWGGEFLVIDYKEYERLAHLEYVD 539 (750)
T ss_pred ------hHHHhhcccceeehhhHHHHHHHHhccCCCCCCceEEEEecCccccccCceecceEEeeccHhhhhhccCcccc
Confidence 355555689999999999999999998742 247999999972 1 22222210
Q ss_pred --Ccc---------------------------------eEE--------eeeccCCcchhhhHHHHhHcCC----CCCcH
Q psy9394 149 --IGN---------------------------------YFL--------LGETLDDAAGDTFDKIAKMLDL----GYPGG 181 (339)
Q Consensus 149 --~~~---------------------------------~~~--------~~~~~~~s~G~~~d~va~~LG~----~~~gg 181 (339)
.++ +.+ ++.+.++|+||+||++|.+||+ +||||
T Consensus 540 L~GGd~Aik~P~R~~ls~l~~~~~~~~k~~~~~~~e~~~~~l~~~~e~gin~p~tSS~GRlfDAvaalLgi~~~~tYEGE 619 (750)
T COG0068 540 LPGGDLAIKYPLRMALSILLRFFLKLIKNYNEKYGELELKVLAQALEKGINAPLTSSIGRVFDAVAALLGICETRTYEGE 619 (750)
T ss_pred cCCCchhhhchHHHHHHHHHHhhhHHHHhhchhhhhhhHHHHHHHHHhccCccccccccHHHHHHHHHhhhhceeeeccc
Confidence 000 000 1346789999999999999999 68998
Q ss_pred HHH--HhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9394 182 PEI--SLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALK 259 (339)
Q Consensus 182 ~~l--e~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~ 259 (339)
++| |.+|...... .+|+++..+++.+++++.+ +..+++.. ....+.+||+.||.++++.+.+++..+.+
T Consensus 620 ~A~~LEa~a~~~~~~--~~~~~~~~~~~~vld~~~~---~~~~l~~~----~~~~~~~iA~~fh~~la~~~~e~~~~~a~ 690 (750)
T COG0068 620 AAMALEALADQSDGV--DYPYEIKNEDNQVLDLKEL---ILGVLEDL----LKDEPEKIATKFHNALAEGFAELAVELAK 690 (750)
T ss_pred hhhhHHHHhhhcccC--cccceeccCCccEeeHHHH---HHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877 7777653222 2354443322223554444 45555432 13678999999999999999999999999
Q ss_pred HhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 260 NTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 260 ~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
++|++.|++|||||+|+.+.+.+.+.+++.|++++.|...|+||+|+++||+...
T Consensus 691 ~~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~ 745 (750)
T COG0068 691 KYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAA 745 (750)
T ss_pred hcCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876
No 15
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.92 E-value=1.5e-23 Score=190.81 Aligned_cols=251 Identities=14% Similarity=0.152 Sum_probs=177.8
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|+.+|||.++.+++++|++++ +++....... |. ...+...+.++.++++.|++..|++.+++|
T Consensus 32 m~~~GIDiGStt~K~Vlld~~--~i~~~~~~~t--------g~-------~~~~~a~~~l~~~l~~~g~~~~~v~~~~~T 94 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCDG--ELYGYNSMRT--------GN-------NSPDSAKNALQGIMDKIGMKLEDINYVVGT 94 (293)
T ss_pred cEEEEEEeCchhEEEEEEeCC--EEEEEEeecC--------CC-------CHHHHHHHHHHHHHHHcCCcccceEEEEEE
Confidence 889999999999999999977 6765433211 11 122445678889999999988889988765
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEE--eeec
Q psy9394 81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFL--LGET 158 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~--~~~~ 158 (339)
|.|. ..+.++ + ..++++.||+.++.+..|- .--.++.+.|.+++++.+.+++++.. +++.
T Consensus 95 -GyGr-----~~~~~a-------~---~~v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~~G~v~dF~MNdk 156 (293)
T TIGR03192 95 -GYGR-----VNVPFA-------H---KAITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDEKGKVTNFLMNDK 156 (293)
T ss_pred -Ccch-----hhcchh-------h---cceeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcCCCcEeeeeecCc
Confidence 6662 212111 1 1478999999999887530 11245555677999999866565443 4678
Q ss_pred cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHH
Q psy9394 159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKAN 237 (339)
Q Consensus 159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~d 237 (339)
|+..+|+|+|.+++.||++.+ ++..+|...... |.++. +.| +|. +|++.++++++ .+++|
T Consensus 157 CAAGTGrFLE~~A~~Lgi~le---el~~~a~~~~~~----p~~Is--s~CtVFA----eSevi~l~~~G------~~~ed 217 (293)
T TIGR03192 157 CAAGTGRGMEVISDLMQIPIA---DLGPRSFDVETE----PEAVS--SICVVFA----KSEALGLLKAG------YTKNM 217 (293)
T ss_pred ccccccHHHHHHHHHcCCCHH---HHHHHHHhcCCC----CCCcC--CcceEec----cHhHHHHHHCC------CCHHH
Confidence 999999999999999999865 454455232211 34443 467 664 88899999876 79999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEE-ccCCCCCChhHHHHHHHHHH
Q psy9394 238 IARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVF-YPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 238 iAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~-~~~~~~~~D~G~aiG~a~~~ 314 (339)
|++++++++++.+..++++.. -.++|+|+|||+.|..+.+.+.+.| +.+++ +|+. +. ---|+|+|.+.
T Consensus 218 I~aGl~~sia~rv~~~~~~~~---i~~~v~~~GGva~N~~l~~al~~~L---g~~v~~~p~~--p~-~~GAlGAAL~A 286 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIG---VEEGFFITGGIAKNPGVVKRIERIL---GIKAVDTKID--SQ-IAGALGAALFG 286 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccC---CCCCEEEECcccccHHHHHHHHHHh---CCCceeCCCC--cc-HHHHHHHHHHH
Confidence 999999999999988877541 2358999999999999999999987 56666 3431 11 12345666655
No 16
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=99.92 E-value=6.8e-24 Score=201.30 Aligned_cols=197 Identities=18% Similarity=0.209 Sum_probs=122.7
Q ss_pred hhccccCCCCCCcE-EEEEEeCCe----eEEEEecCCcceEEee-eccC---CcchhhhHHHHhHcCCCC-CcHHHHHhc
Q psy9394 118 LSPFLSNNSLTFPF-IALLVSGGH----TQLIKVNSIGNYFLLG-ETLD---DAAGDTFDKIAKMLDLGY-PGGPEISLI 187 (339)
Q Consensus 118 ~s~~~~s~~~~~~~-~~l~~dGg~----~~~~~~~~~~~~~~~~-~~~~---~s~G~~~d~va~~LG~~~-~gg~~le~l 187 (339)
+|+++.|+|. .. +++++||+. +.++... .++++.+. ...+ .|+|.||.+++.+||+.. +++.++|+|
T Consensus 1 aSaf~~S~F~--~a~~vlv~DG~Gd~~s~~~~~~~-~~~~~~~~~~~~~~s~~slG~~Y~~~T~~lGf~~~~~egKvMGL 77 (360)
T PF02543_consen 1 ASAFYPSPFD--EACAVLVIDGGGDGESTSIYHAR-GGEIERIRESSYPHSGNSLGYFYEAITEYLGFKPNSDEGKVMGL 77 (360)
T ss_dssp HHHHTTTS-S--EE-EEEEESS-SSSEEEEEEEEE-TTEEEE--EEEEEGG-G-HHHHHHHHHHHTTS-TT--HHHHHHH
T ss_pred CcccCcCCCC--cCeEEEEEECCCCCcceEEEEec-CCEEEEeeeecCCchHHHHHHHHHHHHHhcCCCCCCcccceeee
Confidence 4788999984 56 899999852 3344443 45666542 2233 459999999999999964 478899999
Q ss_pred cccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhh-------c----cccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy9394 188 SEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNI-------K----LDSLKKEKANIARGFLDAIIDVLTFKCIA 256 (339)
Q Consensus 188 A~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~----~~~~~~~~~diAa~~q~~l~~~l~~~~~~ 256 (339)
|+||++... +.-.+...........-............ . .....+.+.|+|+++|..+|+.+++++++
T Consensus 78 A~YG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlAa~~Q~~~E~~v~~~~~~ 156 (360)
T PF02543_consen 78 AAYGKPPDR-FDELLEELFSLNFDGDFDFRQKIPFLSTSLLRFIDFFARSPEEPLTQRHADLAASAQKVLEEIVLHLVRH 156 (360)
T ss_dssp HTTS--S-T-TTTTEEEETTEEEETTSHHHHHHHHHSSS----EEEETTTCEEEEESS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCchH-HHHHHHHHhccccCCCeeeeccccccccchhhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999954211 11111100011111000001111111110 0 01124678999999999999999999999
Q ss_pred HHHHhCCCe-EEEEcchhhhHHHHHHHHHHHHhCCc-EEEccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q psy9394 257 ALKNTGINK-LVVVGGVGANKQLRKKLNILKKQYNY-TVFYPKKEFCTDNGAMIAFAGAMRIENNYKSE 323 (339)
Q Consensus 257 ~~~~~~~~~-v~laGGVa~N~~l~~~l~~~l~~~~~-~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~~ 323 (339)
+.+++++++ ||++||||+||++|++|.+. .++ ++|||| .|||+|++||++.+...+.+...+
T Consensus 157 ~~~~~g~~~~L~laGGvaLN~~~N~~l~~~---~~~~~v~V~P--a~gD~G~aiGaA~~~~~~~~~~~~ 220 (360)
T PF02543_consen 157 LLERTGIDNNLCLAGGVALNCKANGRLLEE---PGFDNVFVPP--AAGDAGLAIGAALYAWHELGGRRP 220 (360)
T ss_dssp HHHHHT--SEEEEESGGGG-HHHHHHHHTS---TT-SEEE--T--TTSGGGHHHHHHHHHHHHTT----
T ss_pred HHHHhCCCCeEEEechHHHHHHHHHHHHhc---CCCCeEEECC--CCCCcchHHHHHHHHHHHhcCCCC
Confidence 999999877 99999999999999999874 356 799999 899999999999999888776555
No 17
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=99.91 E-value=2.9e-22 Score=180.19 Aligned_cols=239 Identities=17% Similarity=0.201 Sum_probs=170.0
Q ss_pred EEEEEecCCCceeEEEEEC-CCCce-eEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 2 IILGIESSCDDSGLALYDT-HIKNL-RSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~-~~~~i-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
+.+|||.+|..++++|+++ + +++ +......+ ..+ .+..+.....++++++++|++..+++.++.
T Consensus 2 ~~~GIDiGStttK~Vlid~~~-~~~~~~~~~~~~------~~~-------~~~~~~~~~~l~~~~~~~g~~~~~i~~i~~ 67 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDG-DKEECLAKRNDR------IRQ-------RDPFKLAEDAYDDLLEEAGLAAADVAYCAT 67 (262)
T ss_pred eEEEEEcCcccEEEEEEecCC-CeeEEEEEEEec------CCC-------CCHHHHHHHHHHHHHHHcCCChhheEEEEE
Confidence 5789999999999999995 4 222 11111111 101 122344567889999999998889999887
Q ss_pred eCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEE--eee
Q psy9394 80 TRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFL--LGE 157 (339)
Q Consensus 80 ~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~--~~~ 157 (339)
| |+|.. +....+ .+++..||+.++.+..|- --.++.+.|.+++++.+++.+.+.- +++
T Consensus 68 T-GYGR~------------~~~a~~----~vtEIt~ha~GA~~~~p~---~~tIiDIGGQD~K~I~~~~~G~v~~f~MNd 127 (262)
T TIGR02261 68 T-GEGES------------LAFHTG----HFYSMTTHARGAIYLNPE---ARAVLDIGALHGRAIRMDERGKVEAYKMTS 127 (262)
T ss_pred E-CCchh------------hhhhcC----CeeEEeHHHHHHHHHCCC---CCEEEEeCCCceEEEEEcCCCcEeeEEecC
Confidence 5 66632 111111 357899999999987652 2255555677999999876665543 467
Q ss_pred ccCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHH
Q psy9394 158 TLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKA 236 (339)
Q Consensus 158 ~~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (339)
.|+.++|+|++.+++.||++.+ ++..+|...+. |.++. +.| +|. ++++.++++++ .+++
T Consensus 128 kCAAGTG~FLe~~A~~L~i~le---el~~~a~~~~~-----~~~is--s~CtVFa----eSevi~~~~~G------~~~e 187 (262)
T TIGR02261 128 QCASGSGQFLENIARYLGIAQD---EIGSLSQQADN-----PEKVS--GICAVLA----ETDVINMVSRG------ISAP 187 (262)
T ss_pred cccccccHHHHHHHHHhCCCHH---HHHHHHhcCCC-----CCCcC--CCceEEc----hhhHHHHHHCC------CCHH
Confidence 8899999999999999999876 45555554432 44443 467 664 88899998876 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEcc
Q psy9394 237 NIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296 (339)
Q Consensus 237 diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~ 296 (339)
||++++++++++.+..++++... ..++|+|+|||+.|..+.+.|.+.+.....++.++
T Consensus 188 dI~aGl~~sia~r~~~~~~~~~~--~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~ 245 (262)
T TIGR02261 188 NILKGIHESMADRLAKLLKSLGA--LDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAE 245 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC--CCCcEEEECcccccHHHHHHHHHHhccCCcceEec
Confidence 99999999999999888876621 12469999999999999999999885333344443
No 18
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=99.91 E-value=4.7e-22 Score=187.52 Aligned_cols=240 Identities=17% Similarity=0.205 Sum_probs=175.3
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|+.+|||.++..+++++++++ +++..... + + ....+....+++++|+++|++..|++.++.|
T Consensus 144 g~~lGIDiGSTttK~Vl~dd~--~Ii~~~~~-~------------t---~~~~~~a~~~l~~~l~~~Gl~~~di~~i~~T 205 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVMEDN--EVIGTGWV-P------------T---TKVIESAEEAVERALEEAGVSLEDVEAIGTT 205 (404)
T ss_pred CEEEEEEcChhheeeEEEcCC--eEEEEEEe-e------------c---ccHHHHHHHHHHHHHHHcCCCccceeEEEee
Confidence 578999999999999999866 68764321 1 1 1234556678999999999988899999876
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceE--Eeeec
Q psy9394 81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYF--LLGET 158 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~--~~~~~ 158 (339)
|.|. ..+....+.+.+ ++.+.||+.++.+..+.......++.+.|.+++.+.++ ++.+. .+++.
T Consensus 206 -GyGR-----------~~i~~~~~ad~i-v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~-~G~v~dF~MNdk 271 (404)
T TIGR03286 206 -GYGR-----------FTIGEHFGADLI-QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVW-DGIPDNFTMGGI 271 (404)
T ss_pred -eecH-----------HHHhhhcCCCce-EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEc-CCceeeEEEcCc
Confidence 6552 223322333432 78899999998887542112234555556789999985 46554 35678
Q ss_pred cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHH
Q psy9394 159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKAN 237 (339)
Q Consensus 159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~d 237 (339)
|..++|+|++.+++.||++++ .+..+|..++.. |.++. +.| +|. ++++.++++++ .+++|
T Consensus 272 CAAGTGrFLE~~A~~Lgi~ie---El~~lA~~~~~~----pv~Is--S~CtVFa----eSevIsll~~G------~~~eD 332 (404)
T TIGR03286 272 CAGASGRFLEMTAKRLGVDIT---ELGKLALKGMPE----KVRMN--SYCIVFG----IQDLVTALAEG------ASPED 332 (404)
T ss_pred ccccCcHHHHHHHHHhCCCHH---HHHHHHHhCCCC----CCCcc--Ccccccc----cHhHHHHHHCC------CCHHH
Confidence 888899999999999999876 566677666421 33443 456 554 67788888765 78999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhCC-CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 238 IARGFLDAIIDVLTF-KCIAALKNTGI-NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 238 iAa~~q~~l~~~l~~-~~~~~~~~~~~-~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
|++++++++++.+.. +++ +.++ ++|+|+|||++|..+.+.+.+++ +.++++|+.
T Consensus 333 IaAGl~~SIa~rv~~~l~~----~~~i~~~VvftGGva~N~gvv~ale~~L---g~~iivPe~ 388 (404)
T TIGR03286 333 VAAAACHSVAEQVYEQQLQ----EIDVREPVILVGGTSLIEGLVKALGDLL---GIEVVVPEY 388 (404)
T ss_pred HHHHHHHHHHHHHHHHHhh----cCCCCCcEEEECChhhhHHHHHHHHHHh---CCcEEECCc
Confidence 999999999999885 344 3354 46999999999999999999987 678999874
No 19
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=99.90 E-value=1e-21 Score=180.98 Aligned_cols=237 Identities=19% Similarity=0.268 Sum_probs=173.8
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|.+||||.+|.+++++|++|+ + ++....+...+ | .| .....+++.|++.+.+..+|+.+++|
T Consensus 135 ~~~LGID~GSTtTK~VLm~d~-~-~I~~~~~~~t~------g-~p---------~~~~~l~~~le~l~~~~~~I~~~~~T 196 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMEDG-K-EILYGFYVSTK------G-RP---------IAEKALKEALEELGEKLEEILGLGVT 196 (396)
T ss_pred cEEEEEecCCcceeEEEEeCC-C-eEEEEEEEcCC------C-Ch---------hHHHHHHHHHHHcccChheeeeeeee
Confidence 789999999999999999999 4 44432222111 1 01 13467888999999988899999887
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceE--Eeeec
Q psy9394 81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYF--LLGET 158 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~--~~~~~ 158 (339)
|.|.. .+...++... .++++.||+.++.+..|- .. .++.+.|.+++++.+++ +.+. .+++.
T Consensus 197 -GYGR~-----------~v~~~~~aD~-~~~Ei~ah~kgA~~f~p~--~d-tIiDIGGQD~K~i~i~d-G~v~df~mN~~ 259 (396)
T COG1924 197 -GYGRN-----------LVGAALGADK-VVVEISAHAKGARYFAPD--VD-TVIDIGGQDSKVIKLED-GKVDDFTMNDK 259 (396)
T ss_pred -cccHH-----------HhhhhhcCCc-ceeeeehhHHHHHHhCCC--Cc-EEEEecCcceeEEEEeC-CeeeeeEeccc
Confidence 66633 1222222222 467888999999987652 23 55666677999999984 5333 25778
Q ss_pred cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHH
Q psy9394 159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKAN 237 (339)
Q Consensus 159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~d 237 (339)
|+.+.|||++.+|+.||++.+ ++..+|..+++ |..+ .+.| +|. ++++++.++++ .+.+|
T Consensus 260 CAAGtGrFLE~~A~~Lgv~v~---E~~~~A~~~~~-----~v~i--~S~CaVF~----eSevi~~~~~G------~~~Ed 319 (396)
T COG1924 260 CAAGTGRFLEVIARRLGVDVE---ELGKLALKATP-----PVKI--NSRCAVFA----ESEVISALAEG------ASPED 319 (396)
T ss_pred cccccchHHHHHHHHhCCCHH---HHHHHHhcCCC-----Cccc--CCeeEEEe----hHHHHHHHHcC------CCHHH
Confidence 999999999999999999987 56677776654 3333 3567 564 66777777765 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 238 IARGFLDAIIDVLTFKCIAALKNTGIN-KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 238 iAa~~q~~l~~~l~~~~~~~~~~~~~~-~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
|++++++++++.+... ..++..++ .|+|.|||+.|..+.+.+.+.+ +.+|++||.
T Consensus 320 I~AGl~~Sv~~~v~~~---~~~~~~i~~~iv~~GGva~n~av~~ale~~l---g~~V~vP~~ 375 (396)
T COG1924 320 ILAGLAYSVAENVAEK---VIKRVDIEEPIVLQGGVALNKAVVRALEDLL---GRKVIVPPY 375 (396)
T ss_pred HHHHHHHHHHHHHHHH---HhhccCCCCCEEEECcchhhHHHHHHHHHHh---CCeeecCCc
Confidence 9999999999988762 23344555 4999999999999999999887 789999984
No 20
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=99.85 E-value=1.5e-20 Score=165.51 Aligned_cols=121 Identities=25% Similarity=0.397 Sum_probs=102.5
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
+|+||||+..+++||++++ +++++.... ..++|++.+.++++++|+++|++++|+|.|+|+.|
T Consensus 1 iLaidTs~~~~sval~~~~--~~~~~~~~~---------------~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~G 63 (202)
T TIGR03725 1 ILAIDTSTEALSVALLDDG--EILAERSEE---------------AGRNHSEILLPMIEELLAEAGLSLQDLDAIAVGVG 63 (202)
T ss_pred CEEEECCCcceEEEEEECC--EEEEEEeeh---------------hhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 6899999999999999977 687754321 24789999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEE
Q psy9394 83 PGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIK 145 (339)
Q Consensus 83 PG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~ 145 (339)
||+|||+|+|+++||+|+..+++|+++|+|+++.|...... ...+.+++|.+..++|.
T Consensus 64 PGSfTGlRig~~~akgla~~~~~p~~~vssL~~lA~~~~~~-----~~~v~~~idArr~~vy~ 121 (202)
T TIGR03725 64 PGSFTGLRIGLATAKGLALALGIPLVGVSSLEALAAQAPAG-----KGPVLVAIDARRGEVYW 121 (202)
T ss_pred CChHHhHHHHHHHHHHHHHHhCCCEEecCHHHHHHhhCccC-----CCeEEEEEEcCCCCEEE
Confidence 99999999999999999999999999999999998764211 23355667877555554
No 21
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.5e-20 Score=166.81 Aligned_cols=126 Identities=27% Similarity=0.444 Sum_probs=105.0
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|++|+||||+..+++|++..+.++++.+.... ..++|.+.++++++.+|.++|++++|+|.|+|+
T Consensus 1 m~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~---------------~~r~hse~l~~~i~~ll~~~~~~~~dld~iav~ 65 (220)
T COG1214 1 MKILAIDTSTSALSVALYLADDGKVLAEHTEK---------------LKRNHAERLMPMIDELLKEAGLSLQDLDAIAVA 65 (220)
T ss_pred CcEEEEEcChhhhhhheeecCCCcEEEEEEEe---------------ccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEc
Confidence 89999999999999999877112677654321 237899999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEE
Q psy9394 81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIK 145 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~ 145 (339)
.|||+|||+|||+.+||+|+..+++|+++|+++++.|.. ....+ ...+.+.+|.+..++|.
T Consensus 66 ~GPGSFTGlRIG~~~AkgLA~~l~iplvgvssL~~~A~~-~~~~~---~~~v~v~idArr~~vY~ 126 (220)
T COG1214 66 KGPGSFTGLRIGVAFAKGLALALNIPLVGVSSLEALAQG-GAEKN---AGFVLVAIDARRGEVYW 126 (220)
T ss_pred cCCCcccchhhHHHHHHHHHHHcCCCEEEeCHHHHHHHh-hhccC---CCceEEEEeccccceEe
Confidence 999999999999999999999999999999999999987 33322 34456667877666555
No 22
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.83 E-value=1.2e-18 Score=158.22 Aligned_cols=243 Identities=19% Similarity=0.231 Sum_probs=175.7
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+++|||.++..+++++++++ ++++...... ...++.+...+.+++++.++++.++..|+++
T Consensus 1 ~~lGIDiGtts~K~vl~d~g--~il~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~T- 61 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLMEDG--KVIGYKWLDT----------------TPVIEETARAILEALKEAGIGLEPIDKIVAT- 61 (248)
T ss_pred CEEEEEcChhheEEEEEcCC--EEEEEEEecC----------------CCCHHHHHHHHHHHHHHcCCChhheeEEEEE-
Confidence 37899999999999999855 7887643211 1234455678888899999988899999887
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEE--eeecc
Q psy9394 82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFL--LGETL 159 (339)
Q Consensus 82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~--~~~~~ 159 (339)
|.|... +.. .+ + .+++..||+.++.+..|. -. .++.+.|.+++++.++ .+++.- ++..|
T Consensus 62 g~~~~~-----------v~~-~~-~--~~~ei~~~~~g~~~~~~~--~~-~vidiGgqd~k~i~~~-~g~~~~~~~n~~c 122 (248)
T TIGR00241 62 GYGRHK-----------VGF-AD-K--IVTEISCHGKGANYLAPE--AR-GVIDIGGQDSKVIKID-DGKVDDFTMNDKC 122 (248)
T ss_pred CCCccc-----------ccc-cC-C--ceEEhhHHHHHHHHHCCC--CC-EEEEecCCeeEEEEEC-CCcEeeeeecCcc
Confidence 333211 111 12 2 478999999999887662 22 4555556789999998 465543 45678
Q ss_pred CCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHHH
Q psy9394 160 DDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238 (339)
Q Consensus 160 ~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~di 238 (339)
..+.|+|++.+++.||++++ +++.++..+.. |.++. ..| +|. ++++.+.+.+. .+++||
T Consensus 123 a~Gtg~f~e~~a~~l~~~~~---e~~~~~~~~~~-----~~~~~--~~c~vf~----~s~vi~~l~~g------~~~~di 182 (248)
T TIGR00241 123 AAGTGRFLEVTARRLGVSVE---ELGSLAEKADR-----KAKIS--SMCTVFA----ESELISLLAAG------VKKEDI 182 (248)
T ss_pred cccccHHHHHHHHHcCCCHH---HHHHHHhcCCC-----CCCcC--CEeEEEe----chhHHHHHHCC------CCHHHH
Confidence 88999999999999999876 45556555432 33332 457 665 67777777654 688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHH
Q psy9394 239 ARGFLDAIIDVLTFKCIAALKNTGIN-KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAG 312 (339)
Q Consensus 239 Aa~~q~~l~~~l~~~~~~~~~~~~~~-~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~ 312 (339)
++++++.++..+.+++.+. +.+ +|+++||++.|..+.+.+.+.+ +.++++|+.. ....++|+|.
T Consensus 183 ~~~~~~~va~~i~~~~~~~----~~~~~Vvl~GGva~n~~l~~~l~~~l---g~~v~~~~~~---~~~~AlGaAl 247 (248)
T TIGR00241 183 LAGVYESIAERVAEMLQRL----KIEAPIVFTGGVSKNKGLVKALEKKL---GMKVITPPEP---QIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHHHHHHHhhc----CCCCCEEEECccccCHHHHHHHHHHh---CCcEEcCCCc---cHHHHHHHHh
Confidence 9999999999998876543 455 8999999999999999999887 6788888731 1245666664
No 23
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=99.80 E-value=5e-18 Score=158.58 Aligned_cols=165 Identities=17% Similarity=0.169 Sum_probs=129.1
Q ss_pred eecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceE--EeeeccCCcchhhhHHHHhHcCCCCCcHHHHHh
Q psy9394 109 GINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYF--LLGETLDDAAGDTFDKIAKMLDLGYPGGPEISL 186 (339)
Q Consensus 109 ~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~--~~~~~~~~s~G~~~d~va~~LG~~~~gg~~le~ 186 (339)
.++++.||+.++.+..|- --.++.+.|.+++++.+++++.+. .+++.|+.++|+|++.+++.||++.+ .+..
T Consensus 250 vitEItcHA~GA~~l~P~---vrTIIDIGGQDsK~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi~le---El~~ 323 (432)
T TIGR02259 250 IRSEILCHGLGAHLMYPG---TRTVLDIGGQDTKGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNMGLH---ELGP 323 (432)
T ss_pred eeeeHHHHHHHHHHHCCC---CCEEEEeCCCceEEEEEcCCCcEeeeeecCcccccchHHHHHHHHHcCCCHH---HHHH
Confidence 458999999999988652 225555567799999998767655 35678999999999999999999875 4555
Q ss_pred ccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q psy9394 187 ISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINK 265 (339)
Q Consensus 187 lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~ 265 (339)
+|..++. |.++. +.| +|. +|++.++++++ .+++||++++++++++.+..++.+... -.++
T Consensus 324 lA~~a~~-----pv~IS--S~CtVFA----ESEVIslla~G------~~reDIaAGL~~SIA~Rv~s~l~r~~~--i~~~ 384 (432)
T TIGR02259 324 LAMKSSK-----PARIN--STCTVFA----GAELRDRLALG------DKREDILAGLHRAIILRAISIISRSGG--ITDQ 384 (432)
T ss_pred HHhcCCC-----CCCcC--CcceEEe----hHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHhcccC--CCCC
Confidence 6655442 44543 567 675 88899999876 799999999999999999998876532 2358
Q ss_pred EEEEcchhhhHHHHHHHHHHHHhC--CcEEEccCC
Q psy9394 266 LVVVGGVGANKQLRKKLNILKKQY--NYTVFYPKK 298 (339)
Q Consensus 266 v~laGGVa~N~~l~~~l~~~l~~~--~~~v~~~~~ 298 (339)
|+|+|||+.|..+.+.|.+.+... +.++++|+.
T Consensus 385 VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~ 419 (432)
T TIGR02259 385 FTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPD 419 (432)
T ss_pred EEEECCccccHHHHHHHHHHHccccCCCeEecCCC
Confidence 999999999999999999988532 357888874
No 24
>PRK13317 pantothenate kinase; Provisional
Probab=99.67 E-value=2.5e-14 Score=131.30 Aligned_cols=252 Identities=18% Similarity=0.221 Sum_probs=163.0
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|+.+|||.++..+++|+++++ +++.+.. +. .+..+ .+...+. +..++..|++|
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~-~~~~~~~-~~-----------------~~~~~----~~~~~l~----~~~~~~~i~~T 54 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEK-KQRTFKT-EY-----------------SAEGK----KVIDWLI----NLQDIEKICLT 54 (277)
T ss_pred CceEEEEeCcccEEEEEEcCC-CeEEEEe-ec-----------------cHHHH----HHHHHhh----ccCCceEEEEE
Confidence 367999999999999999887 4444322 11 11112 2222222 23578888888
Q ss_pred CCCCCCchhHHHHHHHHHHHH--hcCCCEEeecchhHHhhhccccC-----CCCCCcEEEEEEeCCeeEEEEecCCcceE
Q psy9394 81 RGPGLPGSLLVGSSIACSIAL--SINKPVIGINHLEGHLLSPFLSN-----NSLTFPFIALLVSGGHTQLIKVNSIGNYF 153 (339)
Q Consensus 81 ~gPG~~t~lr~g~~~ak~la~--~~~~p~~~v~h~~aHa~s~~~~s-----~~~~~~~~~l~~dGg~~~~~~~~~~~~~~ 153 (339)
|-|. ..++. ..++|++.++++.||+.++.+.. +. .|++. +.-|.+.++..+.+. ..+
T Consensus 55 -G~g~-----------~~~~~~~~~~~~~~~v~E~~a~~~g~~~l~~~~~~~~--~~~~i-~~iG~g~si~~~~g~-~~~ 118 (277)
T PRK13317 55 -GGKA-----------GYLQQLLNYGYPIAEFVEFEATGLGVRYLLKEEGHDL--NDYIF-TNIGTGTSIHYVDGN-SQR 118 (277)
T ss_pred -Ccch-----------hhhhHHHhcCCCeeeeHHHHHHHHHHHHHHHhcCCCC--CcEEE-EEecCceEEEEEeCC-ceE
Confidence 4342 22222 36789888999999999988765 43 46533 334445667777654 555
Q ss_pred EeeeccCCcchhhhHHHHhHc-CC-CCCcHHHHHhccccCCCCcccCCC---------ccccCCCeeeecchHHHHHHHH
Q psy9394 154 LLGETLDDAAGDTFDKIAKML-DL-GYPGGPEISLISEFGDPNIYKFPR---------PMLYTNNFNFSFSGLKTSVLNV 222 (339)
Q Consensus 154 ~~~~~~~~s~G~~~d~va~~L-G~-~~~gg~~le~lA~~g~~~~~~~~~---------~l~~~~~~~~~~~~l~~~~~~~ 222 (339)
.++.++ .-|-+++-++++| +. +++ .+..||..|+....++.+ ++.....|. .|. + +..+
T Consensus 119 r~~Gt~--iGGgt~~gL~~lL~~~~~~~---el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~cs-vFa--k--v~~l 188 (277)
T PRK13317 119 RVGGTG--IGGGTIQGLSKLLTNISDYE---QLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTAS-NFG--K--VLHH 188 (277)
T ss_pred EEcccc--ccHHHHHHHHHHHhCCCCHH---HHHHHHhcCCCccccceeccccCCCCCCCCCceeEe-hhh--h--hhhh
Confidence 555544 2234888888887 43 344 576788888743222111 111112342 232 2 3444
Q ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc-chhhhHHHHHHHHHHHHhCCcEEEccCCCCC
Q psy9394 223 IKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVG-GVGANKQLRKKLNILKKQYNYTVFYPKKEFC 301 (339)
Q Consensus 223 ~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laG-GVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~ 301 (339)
+++ ..+++|||++++..+.+.+..++..+.+..++++|+|+| |++.|..+++.+.+.++..+.++++|+..
T Consensus 189 ~~~------g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~-- 260 (277)
T PRK13317 189 LDS------EFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENG-- 260 (277)
T ss_pred hcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCC--
Confidence 433 368999999999999999999988878888899999999 79999999999998886667788888731
Q ss_pred ChhHHHHHHHHHH
Q psy9394 302 TDNGAMIAFAGAM 314 (339)
Q Consensus 302 ~D~G~aiG~a~~~ 314 (339)
.-..|+|++.+.
T Consensus 261 -~~~gAlGAaL~a 272 (277)
T PRK13317 261 -GYSGAIGALLLA 272 (277)
T ss_pred -chhHHHHHHHHh
Confidence 112445666554
No 25
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=99.16 E-value=1.2e-08 Score=93.37 Aligned_cols=256 Identities=16% Similarity=0.204 Sum_probs=157.1
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
.+|||.++..++++..+.+ +++.+.. +. +++.+.+.+.++...... +.+..|++|.|
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~-~~~~f~~-~~-----------------~~~~~~~~~~l~~~~~~~----~~~~~i~~TGg 58 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPK-GRRKFKT-FE-----------------TTNIDKFIEWLKNQIHRH----SRITTLCATGG 58 (279)
T ss_pred eEEEEeCcceEEEEEEcCC-CcEEEEE-ee-----------------cccHHHHHHHHHHHHHhh----cCceEEEEECC
Confidence 5899999999999999554 4676542 21 123344445554443322 35677888744
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCC----CCCCcEEEEEEeCCeeEEEEecCCcceEEeeec
Q psy9394 83 PGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNN----SLTFPFIALLVSGGHTQLIKVNSIGNYFLLGET 158 (339)
Q Consensus 83 PG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~----~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~ 158 (339)
|.+ .+++.+....++++..++++.|-..+..+..+ ...+|++.+-+ |.+++++.+++. .++.++.+
T Consensus 59 -Ga~-------k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnI-GsGvSi~~v~~~-~~~Rv~Gt 128 (279)
T TIGR00555 59 -GAF-------KFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNI-GTGTSILYVDGD-NYERVGGT 128 (279)
T ss_pred -cHH-------HHHHHhccccCCcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEe-cCCeEEEEEcCc-cEEEEcCc
Confidence 321 22333333334555567788888887666421 01268777776 877888888875 77777776
Q ss_pred cCCcchhhhHHHHhHcC-C-CCCcHHHHHhccccCCCCcccCCC-ccccCCCeeeecch--HHHHHHHHHHhhccccccc
Q psy9394 159 LDDAAGDTFDKIAKMLD-L-GYPGGPEISLISEFGDPNIYKFPR-PMLYTNNFNFSFSG--LKTSVLNVIKNIKLDSLKK 233 (339)
Q Consensus 159 ~~~s~G~~~d~va~~LG-~-~~~gg~~le~lA~~g~~~~~~~~~-~l~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~ 233 (339)
+-.. |-|+ -++++|- . +++ ++..||..|+....++-+ .++..+......++ +-+.+-++..+. .....
T Consensus 129 ~iGG-GTf~-GL~~LL~~~~~~~---el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~--~~~~~ 201 (279)
T TIGR00555 129 SLGG-GTFL-GLGKLLTGIQTFD---ELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKH--LDQSF 201 (279)
T ss_pred cccH-HHHH-HHHHHHcCCCCHH---HHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhccc--cccCC
Confidence 5333 7787 4555554 3 444 576789888753221110 01100000000000 000011111100 01246
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-hhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGG-VGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGG-Va~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
+++|||+|+...+...+..++.-....++.++|++.|| ..-|..+++.+.+.+.-...++++|+.
T Consensus 202 ~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h 267 (279)
T TIGR00555 202 SPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEH 267 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECC
Confidence 79999999999999999999988888889999999999 778999999998887655667788763
No 26
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.71 E-value=6.5e-07 Score=82.32 Aligned_cols=238 Identities=18% Similarity=0.166 Sum_probs=122.5
Q ss_pred EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccch-HHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC-
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPE-LAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR- 81 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~- 81 (339)
||||.++..+.++|++.+ ++++...... +...+ ....+..+.+...+++++++.+.++.|++.+++..
T Consensus 1 lGIDgGgTkt~~vl~d~~-g~il~~~~~~---------~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDEN-GNILGRGKGG---------GANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEETT-SEEEEEEEES----------TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeCC-CCEEEEEEeC---------CCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEe
Confidence 799999999999999987 7777654321 11111 11223345567889999999999999998884431
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeee--cc
Q psy9394 82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGE--TL 159 (339)
Q Consensus 82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~--~~ 159 (339)
|-|...- + ..+.+.+... ++..++ .++.+.. ... ..+ -++++.|.++..+..+++++...++. .+
T Consensus 71 G~~~~~~-~--~~~~~~~~~~---~v~~~~--Da~~al~-~~~---~~~-giv~I~GTGS~~~~~~~~g~~~r~gG~G~~ 137 (271)
T PF01869_consen 71 GYGRAGD-E--QEFQEEIVRS---EVIVVN--DAAIALY-GAT---AED-GIVVIAGTGSIAYGRDRDGRVIRFGGWGHC 137 (271)
T ss_dssp EEEETTT-T--THHHHHHHHH---EEEEEE--HHHHHHH-HHS---TSS-EEEEEESSSEEEEEEETTSEEEEEEESCTT
T ss_pred eecCccc-c--cchhhcceEE---EEEEEH--HHHHHhC-CCC---CCc-EEEEEcCCCceEEEEEcCCcEEEeCCCCCC
Confidence 2111110 0 0011122211 433222 2222111 111 112 45667787777777775666666654 34
Q ss_pred CCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHH
Q psy9394 160 DDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA 239 (339)
Q Consensus 160 ~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diA 239 (339)
-.-.|.+|+...+.|..... .++.+..... |.-+.+ ...| -.|.+. +.....+ .+....+|.
T Consensus 138 ~gD~GSg~~ig~~~L~~~~~---~~d~~~~~~~---~~~~~~---~~~~-A~fa~~---v~~~a~~-----gd~~a~~Il 199 (271)
T PF01869_consen 138 LGDEGSGYWIGRRALRAVLR---ELDGRAEPTP---YAKPAS---NARI-AVFAPT---VFEAAQQ-----GDEVARDIL 199 (271)
T ss_dssp TTTTTSHHHHHHHHHHHHHH---HHTTSSTTSH---HHHTT----HHHH-HCTHHH---HHHHHHT-----TTHHHHHHH
T ss_pred cCCCCcHHHHHHHHHhHHHH---HhcCccccCc---ccCCCC---hhhe-ehhhHH---HHHHHHc-----CCchHHHHH
Confidence 55678888876666532211 1111211110 000000 0001 112111 1211111 123456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--eEEEEcchhhhHHHHHHHHHHH
Q psy9394 240 RGFLDAIIDVLTFKCIAALKNTGIN--KLVVVGGVGANKQLRKKLNILK 286 (339)
Q Consensus 240 a~~q~~l~~~l~~~~~~~~~~~~~~--~v~laGGVa~N~~l~~~l~~~l 286 (339)
....+.|++.+..++. +.+.. +|+++|||+.|..+.+.+.+.+
T Consensus 200 ~~a~~~la~~i~~~~~----~~~~~~~~v~l~GGv~~~~~~~~~l~~~l 244 (271)
T PF01869_consen 200 AEAADELAELIKAVLK----RLGPEKEPVVLSGGVFKNSPLVKALRDAL 244 (271)
T ss_dssp HHHHHHHHHHHHHHHH----TCTCCCCSEEEESGGGGCHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHH----hcCCCCCeEEEECCccCchHHHHHHHHHH
Confidence 6666666665555544 43332 3999999999988887774443
No 27
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.07 E-value=0.0046 Score=56.80 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHH
Q psy9394 245 AIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGA 313 (339)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~ 313 (339)
.+.+.+++.+++..+....+.|+|+||.++...+.+.+.+.+ +.++.+++. -+-..++|++.|
T Consensus 204 ~~~~~i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~l---g~~v~~~~~---P~~~~a~Gaa~~ 266 (267)
T PRK15080 204 PVVEKMASIVARHIEGQDVEDIYLVGGTCCLPGFEEVFEKQT---GLPVHKPQH---PLFVTPLGIALS 266 (267)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECCcccchhHHHHHHHHh---CCCcccCCC---chHHHHHHHHhh
Confidence 344455556666666667889999999999999999999887 566666642 233466676654
No 28
>PRK03011 butyrate kinase; Provisional
Probab=97.98 E-value=0.0045 Score=59.21 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=46.2
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecc-cccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNL-VHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~-~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
|+||.|+-++.++++|+++++ +.++++.+..-. --++|.-+. ...+.-...+..+|++.|+..+++++|+.
T Consensus 2 ~~il~inpgststk~a~~~~~--~~~~~~~~~h~~~~~~~~~~~~------~q~~~r~~~i~~~l~~~g~~~~~l~av~~ 73 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDE--KPIFEETLRHSAEELEKFKTII------DQYEFRKQAILDFLKEHGIDLSELDAVVG 73 (358)
T ss_pred CEEEEEcCCCchheEEEEcCC--ceeeeeccccCHHHHhcCCCcc------chHHHHHHHHHHHHHHcCCChhcceEEEE
Confidence 789999999999999999988 455543221100 001221111 12233346788889999999999999954
No 29
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=97.70 E-value=0.0088 Score=57.16 Aligned_cols=229 Identities=18% Similarity=0.221 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeC----C-CC---CCchhHHHHHHHHHHHHh------------------cCCCEEe
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTR----G-PG---LPGSLLVGSSIACSIALS------------------INKPVIG 109 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~----g-PG---~~t~lr~g~~~ak~la~~------------------~~~p~~~ 109 (339)
.-+++.++++++++++++||.|+.-. | |. .+ .+.+|-. ..+|.. .|.|+++
T Consensus 70 ~a~av~~~l~~~~i~~~~I~~IgsHGQTv~H~P~~~~~~-TlQiG~~--~~iA~~tgi~vV~DFR~~Dia~GGqGAPLvP 146 (364)
T PF03702_consen 70 FADAVNQFLKKNGISPSDIDLIGSHGQTVFHRPEGQHPF-TLQIGDP--AVIAERTGITVVSDFRSADIAAGGQGAPLVP 146 (364)
T ss_dssp HHHHHHHHHHHCT--GGGEEEEEE--EEEEEECCCTTTE-EEEES-H--HHHHHHHSS-EEE--CHHHHHTTS-S---CH
T ss_pred HHHHHHHHHHHcCCCcccccEEEeCCcceecCcCCCCCc-eEecCCH--HHHHHHHCcCEEeechHHHHhccCCCCCccc
Confidence 44688899999999999999998632 1 53 12 2233331 223333 3556655
Q ss_pred ecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcch-hhhHHHH-hHcCCCCCcHHHHHhc
Q psy9394 110 INHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAG-DTFDKIA-KMLDLGYPGGPEISLI 187 (339)
Q Consensus 110 v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G-~~~d~va-~~LG~~~~gg~~le~l 187 (339)
+-|-.. +.++ ..+ .+++==||-+-+-.+...+++.-+ |..-| .+.|... +..+.+|+...+ +
T Consensus 147 ~~~~~l------f~~~--~~~-~~~lNIGGIaNiT~l~~~~~~~~f----DtGPGN~liD~~~~~~~~~~yD~~G~---~ 210 (364)
T PF03702_consen 147 FFHQLL------FRHP--KKP-RAVLNIGGIANITFLPPGGDVIGF----DTGPGNMLIDAWIQRHTGLPYDKDGE---W 210 (364)
T ss_dssp HHHHHH------H--T--TS--EEEEEESSEEEEEEE-TTS--EEE----EEEESSHHHHHHHHHHCS-SS-GGGH---H
T ss_pred HHHHHH------hCCC--CCC-EEEEecCCceEEEEecCCCCceee----ccCcHHHHHHHHHHHHhCCCcCcCcH---h
Confidence 444322 1111 123 333334555544454433333222 23333 4677654 567777863323 3
Q ss_pred cccCCCC-----------cccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy9394 188 SEFGDPN-----------IYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIA 256 (339)
Q Consensus 188 A~~g~~~-----------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~ 256 (339)
|+.|+.. .+..+.| ++.+.-.|.. ..+...+.+. ..+++|+.|.+-+..+..|++.+++
T Consensus 211 A~~G~v~~~ll~~ll~~pyf~~~pP-KStGrE~F~~----~~l~~~l~~~-----~~~~~D~~aTlt~~TA~sI~~~i~~ 280 (364)
T PF03702_consen 211 AASGKVNEELLDRLLSHPYFKRPPP-KSTGREDFGL----EWLQQILDKF-----SLSPEDILATLTEFTAQSIADAIRR 280 (364)
T ss_dssp HHCS---HHHHHHHHTSHHHHS-SS-----TTTSSH----HHHHHHCTTS-----TT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCCHHHHHHHhcCccccCCCC-CcCCccccCH----HHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHHh
Confidence 4455431 1112222 1111112321 1123333332 1268999999999989888888887
Q ss_pred HHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC-CCCCh--hHHHHHHHHHHHHH
Q psy9394 257 ALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK-EFCTD--NGAMIAFAGAMRIE 317 (339)
Q Consensus 257 ~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~-~~~~D--~G~aiG~a~~~~~~ 317 (339)
+... .+.|+++||=+.|..|.++|.+++. +..|..... -.+.| .++++|+.+++.+.
T Consensus 281 ~~~~--~~~v~v~GGGa~N~~L~~~L~~~l~--~~~v~~~~~~gi~~~~~EA~aFA~La~~~~~ 340 (364)
T PF03702_consen 281 FPPQ--PDEVYVCGGGARNPFLMERLQERLP--GIPVKTTDELGIPPDAKEAMAFAWLAYRRLN 340 (364)
T ss_dssp H-TT---EEEEEESGGGG-HHHHHHHHHH-T--TCEEEEGGGGTS-CCCHHHHHHHHHHHHHHC
T ss_pred cCCC--CceEEEECCCcCCHHHHHHHHhhCC--CCEEecHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 7543 5799999999999999999999874 456654432 12334 78888888887643
No 30
>PLN02920 pantothenate kinase 1
Probab=97.64 E-value=0.028 Score=53.79 Aligned_cols=211 Identities=12% Similarity=0.146 Sum_probs=119.9
Q ss_pred CCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCC---------------C------CCCc
Q psy9394 72 KKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNN---------------S------LTFP 130 (339)
Q Consensus 72 ~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~---------------~------~~~~ 130 (339)
.++..|.+|.| |.+ .++..+....++++..+.+++|....+.+... + .-+|
T Consensus 95 ~~~~~i~~TGG-GA~-------k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~~~~~~~~~~~lyP 166 (398)
T PLN02920 95 HDKNFIKATGG-GAY-------KFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHNDLYP 166 (398)
T ss_pred CCceEEEEECC-cHH-------HHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCcccccccCccccCc
Confidence 56788888754 433 23444445566777778888888877644310 0 1245
Q ss_pred EEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCcccCCCc-cccCCCe
Q psy9394 131 FIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYKFPRP-MLYTNNF 208 (339)
Q Consensus 131 ~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~~~~~-l~~~~~~ 208 (339)
++.+- -|..+.++.+.+.++++.++.+. -.-|-|+.-+.-++|. +|+ +|-.||..|+....++-+. ++. +.
T Consensus 167 yLLVN-IGSGVSilkV~~~~~~~RVgGTs-IGGGT~~GL~~LLtg~~sfd---Ell~lA~~Gd~~nvDllVgDIYG--g~ 239 (398)
T PLN02920 167 YLLVN-IGSGVSMIKVDGDGKFERVSGTS-VGGGTFWGLGKLLTKCKSFD---ELLELSHQGNNRVIDMLVGDIYG--GM 239 (398)
T ss_pred eEEEE-cCCCEEEEEEeCCCcEEEEcccc-cchHhHHHHHHHHcCCCCHH---HHHHHHhCCCccccCceeccccC--CC
Confidence 54433 35557788888777888876642 3445566655555554 344 5667888888642221110 110 00
Q ss_pred eeecchHHH-HHHHHHHhhc---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhH-HHHHHHH
Q psy9394 209 NFSFSGLKT-SVLNVIKNIK---LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANK-QLRKKLN 283 (339)
Q Consensus 209 ~~~~~~l~~-~~~~~~~~~~---~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~-~l~~~l~ 283 (339)
++.-.+|.. .+.+-+.+.. .+....+++|||+++...+...+.+++--.++.+++++|+++|.--.|. ...+.|.
T Consensus 240 ~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~~~ik~Ivf~G~fir~~~~tm~~ls 319 (398)
T PLN02920 240 DYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHSYTMDTIS 319 (398)
T ss_pred CCCCCCCCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccCcHHHHHHHH
Confidence 000000100 0111111100 0112356999999999999999999999999999999999999966665 3333222
Q ss_pred H---HHHhCCcEEEccC
Q psy9394 284 I---LKKQYNYTVFYPK 297 (339)
Q Consensus 284 ~---~l~~~~~~v~~~~ 297 (339)
- .-...+.+.++++
T Consensus 320 ~a~~fwS~g~~ka~FLr 336 (398)
T PLN02920 320 VAVHFWSKGEAKAMFLR 336 (398)
T ss_pred HHHHHhccCceeEEEec
Confidence 2 1122345666665
No 31
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=97.61 E-value=0.029 Score=53.61 Aligned_cols=235 Identities=17% Similarity=0.204 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeC----C-CC-CCchhHHHHH--H-------------HHHHHH-hcCCCEEeecch
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTR----G-PG-LPGSLLVGSS--I-------------ACSIAL-SINKPVIGINHL 113 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~----g-PG-~~t~lr~g~~--~-------------ak~la~-~~~~p~~~v~h~ 113 (339)
+-++++++++++++++++||.|++-. | |. .+| +.+|.. . .+.++. ..|.|++++-|.
T Consensus 73 ~a~av~~~~~~~~l~~~~id~IgsHGQTv~H~P~~~~T-lQiG~~~~iA~~tgi~VV~DFR~~D~a~GGqGAPLvp~~~~ 151 (365)
T PRK09585 73 FAEAVNALLAEAGLSPEDIDAIGSHGQTVRHRPGEGFT-LQIGDGALIAELTGITVVADFRRRDVAAGGQGAPLVPAFHQ 151 (365)
T ss_pred HHHHHHHHHHHcCCCccCccEEEeCCcccccCCCCCCe-EEcCCHHHHHHHHCcCEEecChHHHHhcCCCCCCchHHHHH
Confidence 44688899999999999999999742 2 43 222 222221 0 112221 236677766653
Q ss_pred hHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCC-cceEEeeeccCCcchh-hhHHHHhHcCC-CCCcHHHHHhcccc
Q psy9394 114 EGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSI-GNYFLLGETLDDAAGD-TFDKIAKMLDL-GYPGGPEISLISEF 190 (339)
Q Consensus 114 ~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~-~~~~~~~~~~~~s~G~-~~d~va~~LG~-~~~gg~~le~lA~~ 190 (339)
... .++ ... .+++==||.+-+-.+... +. ++ .+|..-|. +.|...+.++- +|+.+.+ +|+.
T Consensus 152 ~Lf------~~~--~~~-~~~lNiGGIaNiT~l~~~~~~--~~--afDtGPgN~liD~~~~~~~~~~~D~~G~---~A~~ 215 (365)
T PRK09585 152 ALF------GHP--DET-RAVLNIGGIANITLLPPGGGP--VI--GFDTGPGNALIDAWIQRHGGKPYDKDGA---WAAS 215 (365)
T ss_pred HHh------cCC--CCc-eEEEecCCceEEEEecCCCCC--ee--EecCChhHHHHHHHHHHHhCCCCCCCCh---HHhC
Confidence 331 111 112 233333554444444332 22 22 23444444 67777777643 5642212 4444
Q ss_pred CCCC-----------cccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9394 191 GDPN-----------IYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALK 259 (339)
Q Consensus 191 g~~~-----------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~ 259 (339)
|+.. .+..+.| ++.+.-.|. ...+.++++.. ..+.+|+.+.+-+..++.|.+.++++..
T Consensus 216 G~v~~~lL~~ll~~pff~~~pP-KStgrE~F~----~~~~~~~l~~~-----~~s~~D~~aTlt~~TA~sI~~~~~~~~~ 285 (365)
T PRK09585 216 GKVDEALLARLLAHPYFALPPP-KSTGRELFN----LAWLERQLAGF-----GLSPEDVQATLTELTAASIARAVRRLPP 285 (365)
T ss_pred CCCCHHHHHHHhcCccccCCCC-CccChhhcC----HHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5431 1211212 111111232 11233344322 2478999999999888888888866542
Q ss_pred HhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC-CCCCh--hHHHHHHHHHHHHHhcCCCC
Q psy9394 260 NTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK-EFCTD--NGAMIAFAGAMRIENNYKSE 323 (339)
Q Consensus 260 ~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~-~~~~D--~G~aiG~a~~~~~~~~~~~~ 323 (339)
..+.|+++||=+.|..|.++|.+++. ..|..... -...| .++++|+.+++.+. |.+.+
T Consensus 286 --~~~~vlv~GGGa~N~~Lm~~L~~~l~---~~v~~~~~~G~~~da~EA~aFA~La~~~l~-g~p~~ 346 (365)
T PRK09585 286 --GPDELLVCGGGARNPTLMERLAALLP---TEVATTDALGIDGDAKEALAFAWLAVRTLR-GLPGN 346 (365)
T ss_pred --CCCEEEEECCCcchHHHHHHHHHhcC---CcccCHHHcCCChhHHHHHHHHHHHHHHHc-CCCCC
Confidence 23579999999999999999998762 34444332 13445 67788888877644 55554
No 32
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.025 Score=52.12 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=49.9
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|++||||.+...|.+.|.+.+ ++++.....-.- .+ .-.+ .......+.+++...+.++|+++++++.+...
T Consensus 5 ~~~lGVDGGGTkt~a~l~~~~-g~vlg~g~sGpA----N~-~~~~---~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~ag 75 (301)
T COG2971 5 PYFLGVDGGGTKTRAVLADED-GNVLGRGKSGPA----NI-QLVG---KEEAVRNIKDAIREALDEAGLKPDEIAAIVAG 75 (301)
T ss_pred cEEEEEccCCcceEEEEEcCC-CcEEEEeccCCc----ee-cccc---hHHHHHHHHHHHHHHHHhcCCCHHHhCceeee
Confidence 579999999999998888855 578875311000 00 0011 13455667789999999999999998877655
Q ss_pred CC
Q psy9394 81 RG 82 (339)
Q Consensus 81 ~g 82 (339)
.+
T Consensus 76 la 77 (301)
T COG2971 76 LA 77 (301)
T ss_pred ee
Confidence 43
No 33
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=97.31 E-value=0.086 Score=50.35 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHh
Q psy9394 241 GFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIEN 318 (339)
Q Consensus 241 ~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~ 318 (339)
.+-+.+.+.+...+..+..-. +.+.|+|+||++.|..+.+.+.+.++. --+|++-| -.|.--++++.+++.++.
T Consensus 270 ~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~-~a~v~~~p---g~~e~~ala~ga~rv~~~ 345 (351)
T TIGR02707 270 LILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSF-IAPVLVYP---GEDEMEALAEGALRVLRG 345 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHh-hCCEEEeC---CcHHHHHHHHhHHHHhcC
Confidence 333444444444444444455 578999999999999999999888752 12455544 356666777777775443
No 34
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.21 E-value=0.073 Score=48.01 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccC
Q psy9394 247 IDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297 (339)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~ 297 (339)
.+.+.+.+++..++.+.+.|+|+||.++...+.+.+.+.+ +.+++.+.
T Consensus 179 ~~~i~~~i~~~l~~~~~~~v~LtGG~a~ipgl~e~l~~~l---g~~v~~~~ 226 (239)
T TIGR02529 179 YQKMASIVKRHIEGQGVKDLYLVGGACSFSGFADVFEKQL---GLNVIKPQ 226 (239)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECchhcchhHHHHHHHHh---CCCcccCC
Confidence 3445555666666778899999999999999999999887 67777664
No 35
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.21 E-value=0.0046 Score=53.67 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
..+.++++++.+.++-.+.+.++.+.+.+ ..+.|.++||.+.|..+++.+.+.+ +.+|.+++ .+.+.++|+
T Consensus 118 ~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl---~~~V~~~~----~~e~~a~Ga 190 (198)
T PF02782_consen 118 TTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL---GRPVVRPE----VEEASALGA 190 (198)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH---TSEEEEES----SSTHHHHHH
T ss_pred cCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh---CCceEeCC----CCchHHHHH
Confidence 45899999999999999999999887763 4679999999999999999999987 68888886 255677888
Q ss_pred HHHHHH
Q psy9394 311 AGAMRI 316 (339)
Q Consensus 311 a~~~~~ 316 (339)
|.+..+
T Consensus 191 A~~A~~ 196 (198)
T PF02782_consen 191 ALLAAV 196 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777653
No 36
>PRK00976 hypothetical protein; Provisional
Probab=96.98 E-value=0.23 Score=46.63 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcchhhhH--HHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH-HHHhcCCC
Q psy9394 247 IDVLTFKCIAALKNTGINKLVVVGGVGANK--QLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM-RIENNYKS 322 (339)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~v~laGGVa~N~--~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~-~~~~~~~~ 322 (339)
.+.+...+..+.--...+.|+++|||+.+. .+.+++.+.+.. ++..+-+|+| ++|+|.+. ..-+|++.
T Consensus 248 ~~~LA~~IAnLi~llDPe~IVLGGGVS~~~e~~L~~~I~e~l~~-------~~a~LG~dAG-aiGAA~iA~~i~~G~~~ 318 (326)
T PRK00976 248 ALFVAMEIASLLLLNPEDNVVLAGSVGEMDEPDVSERIKELLDK-------KVLVLGKESA-AIGLALIARDIFNGKKD 318 (326)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCchhHHHHHHHHHhcc-------cccccCCchH-HHHHHHHHHHHhCCCce
Confidence 333333333333344678999999999887 677777665521 1333445544 46766654 33455443
No 37
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.36 Score=45.11 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=74.4
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHH-HHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAA-RTHIQTIIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
|+++|||.+.+.+.+++++.. ++++...+.... .... ..-.+.+...+++++++.+ ...++-.|++
T Consensus 6 ~~~lgidIggt~i~~~l~d~~-g~~l~~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi 72 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLD-GEILLRERIPTP-----------TPDPEEAILEAILALVAELLKQAQ-GRVAIIGIGI 72 (314)
T ss_pred cEEEEEEecCCEEEEEEECCC-CcEEEEEEEecC-----------CCCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEe
Confidence 689999999999999999986 678766543321 1111 2445667788888888765 2223444444
Q ss_pred eCCCCCCchh-----------HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCC-CCCCcEEEEEEe
Q psy9394 80 TRGPGLPGSL-----------LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNN-SLTFPFIALLVS 137 (339)
Q Consensus 80 ~~gPG~~t~l-----------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~-~~~~~~~~l~~d 137 (339)
+ +||....- +....+.+.|....++|+.--+.-.|-|++-.+... .....++.+.++
T Consensus 73 ~-~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~g 141 (314)
T COG1940 73 P-GPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGRGIDDVVYITLG 141 (314)
T ss_pred c-cceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEc
Confidence 4 57655321 112335778888899999766666665555333211 111245555554
No 38
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.37 Score=45.62 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=65.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEcc-CCCCCCh--hHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP-KKEFCTD--NGAMIA 309 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~-~~~~~~D--~G~aiG 309 (339)
.+.+|+++.+-+..+..|++.+.. ..+..+.++++||-..|..+.++|...++ |..|.-. +.-+.+| .+.+++
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~~--~~~~p~~l~vcGGG~~N~llm~rLa~l~~--g~~V~~t~~~g~~gd~~EA~afA 338 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVAT--LQGDPRRLVVCGGGRRNPLLMARLAALLE--GVEVATTDEAGLDGDAVEAEAFA 338 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhh--ccCCCceeEeecCCccCHHHHHHHHHhcC--CCeeeechhcCCCcchhhHHHHH
Confidence 478999988888888888777662 24567899999999999999999998774 5555433 2346666 677788
Q ss_pred HHHHHHHHhcCCCC
Q psy9394 310 FAGAMRIENNYKSE 323 (339)
Q Consensus 310 ~a~~~~~~~~~~~~ 323 (339)
++++.. ..|.+.+
T Consensus 339 ~LA~r~-l~g~P~n 351 (371)
T COG2377 339 WLAWRT-LEGLPGN 351 (371)
T ss_pred HHHHHH-HhCCCCC
Confidence 888876 7776644
No 39
>PLN02902 pantothenate kinase
Probab=96.83 E-value=0.039 Score=57.63 Aligned_cols=189 Identities=14% Similarity=0.140 Sum_probs=114.1
Q ss_pred CCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC------------C---------CCCCc
Q psy9394 72 KKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN------------N---------SLTFP 130 (339)
Q Consensus 72 ~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s------------~---------~~~~~ 130 (339)
.++..|.+| |=|.+ .+...+....++++..+.+++|....+.+.. + ..-+|
T Consensus 144 ~~~~~i~aT-GGGA~-------K~~~~~~~~l~~~l~k~DEm~~li~Gl~fLl~~i~~e~f~~~~~~~~~~~~~~~~lyP 215 (876)
T PLN02902 144 NGNGVIKAT-GGGAY-------KFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGEKEFVQIDQNDLFP 215 (876)
T ss_pred CCceEEEEe-CCccc-------cHHHHHHHHhCCCeeeecHHHHHHHHHHHHHhhCcchheeeccccccccccCccCCCc
Confidence 355667666 44655 3455666667888888888888887764320 0 01245
Q ss_pred EEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCcccCCCc-cccCCCe
Q psy9394 131 FIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYKFPRP-MLYTNNF 208 (339)
Q Consensus 131 ~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~~~~~-l~~~~~~ 208 (339)
++.+- -|..+.++.+.+.++++.++.+. .+-|-|+.-+.-++|. +|+ +|-.||..|+....++-+. |+. +.
T Consensus 216 yLLVN-IGSGVSilkV~~~~~~~RVgGTs-IGGGT~~GL~~LLtg~~sFd---Ell~LA~~Gd~~~vDllVgDIYG--g~ 288 (876)
T PLN02902 216 YLLVN-IGSGVSMIKVDGDGKFERVSGTN-VGGGTYWGLGRLLTKCKSFD---ELLELSQRGDNSAIDMLVGDIYG--GM 288 (876)
T ss_pred eEEEE-cCCceEEEEEecCCcEEEecccc-cccHhHHHHHHHHcCCCCHH---HHHHHHhcCCccccCeeeccccC--CC
Confidence 55443 35557788888777888876642 4556676665556665 354 5667898888643222111 110 00
Q ss_pred eeecchHHH-HHHHHHHhhc---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhh
Q psy9394 209 NFSFSGLKT-SVLNVIKNIK---LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGAN 275 (339)
Q Consensus 209 ~~~~~~l~~-~~~~~~~~~~---~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N 275 (339)
++.-.++.. .+.+-+.+.. +.....+++|||+++...+...|.+++.-..+.+++++|+++|.--.|
T Consensus 289 ~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~~~ikrIvF~G~fIr~ 359 (876)
T PLN02902 289 DYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRG 359 (876)
T ss_pred CcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecceecC
Confidence 000001110 1111121110 011235699999999999999999999999999999999999986554
No 40
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=96.81 E-value=0.27 Score=46.69 Aligned_cols=203 Identities=16% Similarity=0.210 Sum_probs=108.1
Q ss_pred CCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-------------------------CC
Q psy9394 72 KKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-------------------------NS 126 (339)
Q Consensus 72 ~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-------------------------~~ 126 (339)
.....|.+|.| |.+ .+.+.+....++++....+++|.+.+..+.. ..
T Consensus 82 ~~~~~I~aTGG-GA~-------Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~ 153 (341)
T PF03630_consen 82 QKITKICATGG-GAF-------KYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNS 153 (341)
T ss_dssp GCSSEEEEEST-THH-------HHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTS
T ss_pred ccceEEEEeCC-cHH-------HHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCC
Confidence 35567777744 543 2344444556667777777777666522210 00
Q ss_pred CCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCCC-CCcHHHHHhccccCCCCcccCC------
Q psy9394 127 LTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLG-YPGGPEISLISEFGDPNIYKFP------ 199 (339)
Q Consensus 127 ~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~~-~~gg~~le~lA~~g~~~~~~~~------ 199 (339)
..+|++.+-+ |..+.++.+++.+.++.++.+. -.-|-|+.-+.-+.|.. |+ ++-.||..|+....++-
T Consensus 154 ~~~Pyllvni-GsGvSi~~v~~~~~~~rvgGs~-iGGgT~~GL~~llt~~~~~~---e~~~la~~G~~~~vDllV~DIyg 228 (341)
T PF03630_consen 154 DIYPYLLVNI-GSGVSILKVEGPNQFERVGGSS-IGGGTFWGLCSLLTGCKSFD---EILELAKKGDNSNVDLLVGDIYG 228 (341)
T ss_dssp S-SSEEEEEE-SSSEEEEEEEETTEEEEEEEES--SHHHHHHHHHHHH---SHH---HHHHHHHH--GGGTSEEHHHHHS
T ss_pred CCCcEEEEEc-CCceEEEEEeCCCceEEEeccc-cchHhHHHHHHHhcCCCCHH---HHHHHhcCCCccccCceeeeccC
Confidence 1245554433 4456778887777877776642 34455666555555653 33 56668888875322110
Q ss_pred --C---ccccCCCee-eecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchh
Q psy9394 200 --R---PMLYTNNFN-FSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVG 273 (339)
Q Consensus 200 --~---~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa 273 (339)
+ ++. .+.. -+|..+...-. +.....++|+|+++...+...+..++.-.++.+++++|+++|.-.
T Consensus 229 ~~y~~~~L~--~~~~AssFGk~~~~~~--------~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~~~~I~f~G~~~ 298 (341)
T PF03630_consen 229 GDYNKIGLP--GDLTASSFGKVQSKAK--------RKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHGVKRIVFGGSFI 298 (341)
T ss_dssp S-BGGGTB---TTSEEETTCCGGSHHH--------H-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEEESGGG
T ss_pred CCcccCCCC--HHHHHhhhhhhhhccc--------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 0 110 1111 12222211000 012357899999999999999999999999999999999999988
Q ss_pred hhHHH-HHHHH---HHHHhCCcEEEccC
Q psy9394 274 ANKQL-RKKLN---ILKKQYNYTVFYPK 297 (339)
Q Consensus 274 ~N~~l-~~~l~---~~l~~~~~~v~~~~ 297 (339)
.|..+ .+.|. +-......+.++++
T Consensus 299 ~~~~~~~~~l~~a~~~~s~~~~~~~fl~ 326 (341)
T PF03630_consen 299 RNNPITMRTLSYAINFWSKGELKALFLR 326 (341)
T ss_dssp TSSCHHHHHHHHHHHHHTTTS-EEEEET
T ss_pred cCCHHHHHHHHHHHHHhccCCceEEEec
Confidence 76544 44444 22222345666665
No 41
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.33 E-value=0.92 Score=42.38 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=74.4
Q ss_pred EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP 83 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gP 83 (339)
+|||.+.+.+.+++++.. ++++.+.+... + .......+.+...+++++++.++...++..|+++. |
T Consensus 1 lgidig~t~~~~~l~d~~-g~i~~~~~~~~-----------~-~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~-p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEE-GNILSKWKVPT-----------D-TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGA-P 66 (318)
T ss_pred CEEEeCCCEEEEEEECCC-CCEEEEEEeCC-----------C-CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEec-c
Confidence 589999999999999866 57876543321 0 01233456677888899998888777888888764 5
Q ss_pred CCCc---hh--------HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEe
Q psy9394 84 GLPG---SL--------LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVS 137 (339)
Q Consensus 84 G~~t---~l--------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~d 137 (339)
|... +. .-+..+.+.+....++|++-.+.-.+.+++-.... ......++.+.++
T Consensus 67 G~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~ig 132 (318)
T TIGR00744 67 GPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGAGKGARDVICITLG 132 (318)
T ss_pred ccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcccCCCCcEEEEEeC
Confidence 5431 11 01223456677778899887776666655433211 1111345666655
No 42
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=96.30 E-value=0.9 Score=41.95 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=63.5
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|.++|||.+.+.+.+++++.+ ++++...+.+. +.. ...+.+...+..++++.. .+++.|+++
T Consensus 1 ~~~lgvdig~~~i~~~l~dl~-g~i~~~~~~~~---~~~-----------~~~~~~~~~i~~~i~~~~---~~~~~igi~ 62 (291)
T PRK05082 1 MTTLAIDIGGTKIAAALVGED-GQIRQRRQIPT---PAS-----------QTPEALRQALSALVSPLQ---AQADRVAVA 62 (291)
T ss_pred CcEEEEEECCCEEEEEEEcCC-CcEEEEEEecC---CCC-----------CCHHHHHHHHHHHHHHhh---hcCcEEEEe
Confidence 789999999999999999976 67876543321 100 001223344444444321 245677765
Q ss_pred CCCCCCc-h---------h--HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEe
Q psy9394 81 RGPGLPG-S---------L--LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVS 137 (339)
Q Consensus 81 ~gPG~~t-~---------l--r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~d 137 (339)
. ||.+. + + .-++.+.+.+...++.|++-.+.-.+-+++-+.........++.+.++
T Consensus 63 ~-pG~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig 130 (291)
T PRK05082 63 S-TGIINDGILTALNPHNLGGLLHFPLVQTLEQLTDLPTIALNDAQAAAWAEYQALPDDIRNMVFITVS 130 (291)
T ss_pred C-cccccCCeeEEecCCCCccccCCChHHHHHHHhCCCEEEECcHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 3 44321 0 0 112234566777789998876766655444222101111355666655
No 43
>PRK09557 fructokinase; Reviewed
Probab=96.19 E-value=0.84 Score=42.39 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=57.2
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+.||||.+.+.+.+++++.+ ++++...++.. |........+.+...+++...+. ..+..|+++.
T Consensus 1 ~~lgidig~t~~~~~l~d~~-g~i~~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~ 64 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDA-GEELFRKRLPT-----------PRDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI 64 (301)
T ss_pred CEEEEEECCCcEEEEEECCC-CCEEEEEEecC-----------CCCCHHHHHHHHHHHHHHHHhhc----CCceEEEecC
Confidence 36899999999999999876 67876543321 00001122233333444444322 2345666553
Q ss_pred CCCCCc---h--------hHHHHHHHHHHHHhcCCCEEeecchhHHhhhcc
Q psy9394 82 GPGLPG---S--------LLVGSSIACSIALSINKPVIGINHLEGHLLSPF 121 (339)
Q Consensus 82 gPG~~t---~--------lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~ 121 (339)
||... | ..-+..+.+.+...++.|++-.+.-.|.|++-+
T Consensus 65 -pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~ 114 (301)
T PRK09557 65 -PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEA 114 (301)
T ss_pred -cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHH
Confidence 55431 1 001223455677778899887777777666543
No 44
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.96 E-value=0.053 Score=48.83 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=55.1
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
++||||.++..++++|++.+ ++++...+... ....+..|... ....+-.+.+...+++++++++....+|.+|+++.
T Consensus 1 y~lgiDiGTts~K~~l~d~~-g~iv~~~~~~~-~~~~~~~g~~e-~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~ 77 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED-GKIVASASRPY-PYYTPEPGWAE-QDPDEIWEAICEALKELLSQAGIDPEQIKAIGISG 77 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT-SCEEEEEEEEE-TEBCSSTTEEE-E-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEeCC-CCEEEEEEEee-eeccccccccc-cChHHHHHHHHHHHHHHHhhcCcccceeEEEEecc
Confidence 58999999999999999977 78887654322 11222112221 13345677778899999999989889999999873
No 45
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=95.86 E-value=0.087 Score=40.14 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=50.8
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|.+||||.+...+.+|+++.+ ++++....... . .....+...+..++++. +++.|+++
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~-g~~~~~~~~~~---~-------------~~~~~~~~~l~~~i~~~-----~~~~i~Ig 58 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET-GKLADPLEVIP---R-------------TNKEADAARLKKLIKKY-----QPDLIVIG 58 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC-CCEecCEEEEE---e-------------cCcchHHHHHHHHHHHh-----CCCEEEEe
Confidence 789999999999999999866 56664322111 0 01123445566666652 57788887
Q ss_pred CCCCCCchhHH---HHHHHHHHHHhcCCCEEeec
Q psy9394 81 RGPGLPGSLLV---GSSIACSIALSINKPVIGIN 111 (339)
Q Consensus 81 ~gPG~~t~lr~---g~~~ak~la~~~~~p~~~v~ 111 (339)
-||...|.-. -..+.+.+....++|++-++
T Consensus 59 -~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 59 -LPLNMNGTASRETEEAFAELLKERFNLPVVLVD 91 (99)
T ss_pred -CCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEe
Confidence 5776543210 02333444444556655444
No 46
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.79 E-value=0.069 Score=53.49 Aligned_cols=84 Identities=20% Similarity=0.144 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
..+.++++++.+.++-.+...++.+.+..+ .+.|.++||.+.|..+++.+.+.+ |.+|.++. ...+.++|+
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~----~~e~~a~Ga 444 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL---GVPVERPV----VAETTALGA 444 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh---CCeeEecC----cccchHHHH
Confidence 357999999999999999999988875444 568999999999999999998876 77887665 223567898
Q ss_pred HHHHHHHhcCCCC
Q psy9394 311 AGAMRIENNYKSE 323 (339)
Q Consensus 311 a~~~~~~~~~~~~ 323 (339)
|.+..+..|...+
T Consensus 445 A~~A~~~~G~~~~ 457 (498)
T PRK00047 445 AYLAGLAVGFWKD 457 (498)
T ss_pred HHHHhhhcCcCCC
Confidence 8888777776554
No 47
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.75 E-value=0.073 Score=52.91 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA 311 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a 311 (339)
.++++++++.+.++-.+...++.+.+..+ .+.|.++||.+.|..+++.+.+.+ |.+|.+++ ...+.++|+|
T Consensus 360 ~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~---g~pv~~~~----~~e~~a~GaA 432 (481)
T TIGR01312 360 TRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF---GTPVDVPE----GEEGPALGAA 432 (481)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh---CCceeecC----CCcchHHHHH
Confidence 48899999999999999998887765433 478999999999999999998876 67777765 2235678888
Q ss_pred HHHHHHhcCCCC
Q psy9394 312 GAMRIENNYKSE 323 (339)
Q Consensus 312 ~~~~~~~~~~~~ 323 (339)
.+..+..|.+.+
T Consensus 433 ~~a~~~~g~~~~ 444 (481)
T TIGR01312 433 ILAAWALGEKDL 444 (481)
T ss_pred HHHHHhcCCCCC
Confidence 888777776555
No 48
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.69 E-value=0.081 Score=53.07 Aligned_cols=84 Identities=21% Similarity=0.173 Sum_probs=66.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
..+.++++++.+.++-.+...++.+.+..| .+.|.++||-+.|..+++.+.+.+ |.+|.++.. ..+.++|+
T Consensus 375 ~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~---g~pV~~~~~----~e~~alGa 447 (504)
T PTZ00294 375 TTRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL---GKDIVVPEM----AETTALGA 447 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh---CCceEecCc----ccchHHHH
Confidence 358899999999999999888888765444 568999999999999999988876 778877752 22457788
Q ss_pred HHHHHHHhcCCCC
Q psy9394 311 AGAMRIENNYKSE 323 (339)
Q Consensus 311 a~~~~~~~~~~~~ 323 (339)
|.+..+-.|...+
T Consensus 448 Al~aa~a~G~~~~ 460 (504)
T PTZ00294 448 ALLAGLAVGVWKS 460 (504)
T ss_pred HHHHHhhcCccCC
Confidence 8887777776554
No 49
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=95.63 E-value=1.9 Score=40.05 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcE------EEccCCCCCChhHHHHHHHHH
Q psy9394 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYT------VFYPKKEFCTDNGAMIAFAGA 313 (339)
Q Consensus 240 a~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~------v~~~~~~~~~D~G~aiG~a~~ 313 (339)
..+.+...+.+...+..+..-...+.|++.||++....+.+.+.+.+.+.-+. +... ..++.+..+|++..
T Consensus 223 ~~~~~~~~~~la~~l~n~~~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s---~~~~~a~~~GAa~~ 299 (303)
T PRK13310 223 VAHVERYLDLLAICLGNILTIVDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKA---RHGDAGGVRGAAFL 299 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEc---ccCchHHHHhHHHH
Confidence 33344444455555555555667889999999987777777777777543221 1111 24455567787765
Q ss_pred H
Q psy9394 314 M 314 (339)
Q Consensus 314 ~ 314 (339)
.
T Consensus 300 ~ 300 (303)
T PRK13310 300 H 300 (303)
T ss_pred h
Confidence 4
No 50
>PRK15027 xylulokinase; Provisional
Probab=95.40 E-value=0.11 Score=51.74 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA 311 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a 311 (339)
.+.++++++.+.++-.+...++.+.+ .+ .+.|.++||.+.|..+++.+.+.+ |.+|.+++ ..+.+.++|+|
T Consensus 357 ~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pv~~~~---~~~~~~a~GaA 429 (484)
T PRK15027 357 GPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWRQMLADIS---GQQLDYRT---GGDVGPALGAA 429 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEeCcccCCHHHHHHHHHHh---CCeEEeec---CCCcchHHHHH
Confidence 58999999999999999888887754 34 468999999999999999998876 77776554 23335688988
Q ss_pred HHHHHHhcCCCC
Q psy9394 312 GAMRIENNYKSE 323 (339)
Q Consensus 312 ~~~~~~~~~~~~ 323 (339)
.+..+..|...+
T Consensus 430 ~lA~~~~G~~~~ 441 (484)
T PRK15027 430 RLAQIAANPEKS 441 (484)
T ss_pred HHHHHhcCCcCC
Confidence 888887777665
No 51
>PRK09698 D-allose kinase; Provisional
Probab=95.35 E-value=2.3 Score=39.36 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=64.0
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
.++|||.+...+.+++++.+ ++++.+.+.... .. . .....+.+...++.++++.+ .++..|+++.
T Consensus 5 ~~lgidig~t~i~~~l~d~~-g~i~~~~~~~~~----~~----~---~~~~~~~l~~~i~~~~~~~~---~~i~gigia~ 69 (302)
T PRK09698 5 VVLGIDMGGTHIRFCLVDAE-GEILHCEKKRTA----EV----I---APDLVSGLGEMIDEYLRRFN---ARCHGIVMGF 69 (302)
T ss_pred EEEEEEcCCcEEEEEEEcCC-CCEEEEEEeCCc----cc----c---chHHHHHHHHHHHHHHHHcC---CCeeEEEEeC
Confidence 57999999999999999876 678876543210 00 0 11125556677888888764 3677777653
Q ss_pred CCCCCc---h-------h----HHHHHHHHHHHHhcCCCEEeecchhHHhhh
Q psy9394 82 GPGLPG---S-------L----LVGSSIACSIALSINKPVIGINHLEGHLLS 119 (339)
Q Consensus 82 gPG~~t---~-------l----r~g~~~ak~la~~~~~p~~~v~h~~aHa~s 119 (339)
||.+. + + .-+..+.+.|....++|++-.+.-.+.+++
T Consensus 70 -pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~ 120 (302)
T PRK09698 70 -PALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLW 120 (302)
T ss_pred -CcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHH
Confidence 44331 1 0 112234566777789998877766665544
No 52
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.32 E-value=0.13 Score=51.48 Aligned_cols=84 Identities=30% Similarity=0.239 Sum_probs=67.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
..+.++++++.+.++-.+...++.+.+..+ .+.|.++||-+.|..+++.+.+.+ |..|.++.. ..+.++|+
T Consensus 368 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~---g~pv~~~~~----~e~~alGa 440 (493)
T TIGR01311 368 TTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL---GVPVVRPKV----TETTALGA 440 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc---CCeeEecCC----CcchHHHH
Confidence 358999999999999999999888865434 578999999999999999998876 778877542 23467888
Q ss_pred HHHHHHHhcCCCC
Q psy9394 311 AGAMRIENNYKSE 323 (339)
Q Consensus 311 a~~~~~~~~~~~~ 323 (339)
|.+..+..|.+.+
T Consensus 441 A~~a~~~~G~~~~ 453 (493)
T TIGR01311 441 AYAAGLAVGYWKS 453 (493)
T ss_pred HHHHHhhcCcCCC
Confidence 8888777776655
No 53
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.28 E-value=0.12 Score=51.77 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA 311 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a 311 (339)
.+.++++++.+.++-.+...++.+.+..+ ++.|.++||.+.|..+++.+.+.+ |.+|.++.. ..+.++|+|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pv~~~~~----~e~~a~GaA 443 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIF---EQEIVVPES----YESSCLGAC 443 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHc---CCeeEecCC----CCcchHHHH
Confidence 47899999999999988888777766444 578999999999999999988876 778877652 124577888
Q ss_pred HHHHHHhcCCCC
Q psy9394 312 GAMRIENNYKSE 323 (339)
Q Consensus 312 ~~~~~~~~~~~~ 323 (339)
.+..+..|...+
T Consensus 444 ~la~~~~G~~~~ 455 (505)
T TIGR01314 444 ILGLKALGLIED 455 (505)
T ss_pred HHHHHhcCccCC
Confidence 877777776544
No 54
>PRK10331 L-fuculokinase; Provisional
Probab=95.26 E-value=0.14 Score=50.94 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=66.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
..+.++++++.+.++-.+.+.++.+.+.. ..+.|.++||.+.|..+++.+.+.+ |..|.++. ...+.++|+
T Consensus 358 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pV~~~~----~~e~~a~Ga 430 (470)
T PRK10331 358 TTRGHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML---DIPIKVLD----DAETTVAGA 430 (470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc---CCeeEecC----cccchHHHH
Confidence 35899999999999999988888886643 3678999999999999999988876 77887665 223567888
Q ss_pred HHHHHHHhcCCCC
Q psy9394 311 AGAMRIENNYKSE 323 (339)
Q Consensus 311 a~~~~~~~~~~~~ 323 (339)
|.+..+-.|...+
T Consensus 431 A~la~~~~G~~~~ 443 (470)
T PRK10331 431 AMFGWYGVGEFSS 443 (470)
T ss_pred HHHHHHhcCCCCC
Confidence 8887777776555
No 55
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.18 E-value=0.21 Score=49.73 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
..+.++++++.+.++-.+...++.+.+..+ .+.|.++||.+.|..+++.+.+.+ |..|..++ . .+.++|+
T Consensus 344 ~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~----~-ea~alGa 415 (471)
T PRK10640 344 ESDAELARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC---GIRVIAGP----V-EASTLGN 415 (471)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh---CCCeeeCC----h-hHHHHHH
Confidence 378999999999999999998888876544 468999999999999999998887 67774433 2 3567888
Q ss_pred HHHHHHHhcCCCC
Q psy9394 311 AGAMRIENNYKSE 323 (339)
Q Consensus 311 a~~~~~~~~~~~~ 323 (339)
+....+..|...+
T Consensus 416 a~~a~~a~G~~~~ 428 (471)
T PRK10640 416 IGIQLMTLDELNN 428 (471)
T ss_pred HHHHHHHcCCcCC
Confidence 8888777776555
No 56
>KOG2201|consensus
Probab=95.17 E-value=0.8 Score=42.71 Aligned_cols=192 Identities=15% Similarity=0.184 Sum_probs=109.2
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhcccc-C-----------C----------C---CCCcE
Q psy9394 77 IAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLS-N-----------N----------S---LTFPF 131 (339)
Q Consensus 77 ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~-s-----------~----------~---~~~~~ 131 (339)
+.+..|-|.| .+.+-+....++++.....+.+.+....+. + + + .-+|+
T Consensus 104 ~i~aTGGGA~-------Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d~~yPy 176 (371)
T KOG2201|consen 104 VICATGGGAY-------KFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLDSPYPY 176 (371)
T ss_pred EEEEeCCcce-------eHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccCCCCce
Confidence 3444465665 244555555666666666666666543221 0 0 0 01455
Q ss_pred EEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCccc-CCCccccCCCee
Q psy9394 132 IALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYK-FPRPMLYTNNFN 209 (339)
Q Consensus 132 ~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~-~~~~l~~~~~~~ 209 (339)
+.|-+ |....++.+.+.++++.++.+- -.-|-|+.-.+-+-|- +|+ +|..||..|++...+ +-..++ +.+
T Consensus 177 LLVNI-GSGVSIlkV~~~~~feRvgGsS-lGGGTf~GL~~LLTg~~sfd---E~LelA~~Gd~~~vD~LV~DIY---Gg~ 248 (371)
T KOG2201|consen 177 LLVNI-GSGVSILKVDGPDNFERVGGSS-LGGGTFLGLGSLLTGCKSFD---ELLELASRGDNRNVDMLVRDIY---GGD 248 (371)
T ss_pred EEEEc-CCCeEEEEEecCCceeEecccc-cCCcchhhhHhHhcCCCCHH---HHHHHHhcCCCchhhhhhhhcc---Ccc
Confidence 44333 4456788888888898776531 2335566654444444 355 566699999864221 111111 111
Q ss_pred eecchHH-HHHHHHHHhh-c-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHH
Q psy9394 210 FSFSGLK-TSVLNVIKNI-K-LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLN 283 (339)
Q Consensus 210 ~~~~~l~-~~~~~~~~~~-~-~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~ 283 (339)
.+--+|. +.+.+-+.+. . ..+...+++|||.+.-..+.+-|-+++.-.....++++|++.|=--.|.....++.
T Consensus 249 y~~fGL~~~~iASSFGk~~~~eK~~~~s~eDia~SlL~mIsnNIGqiAyl~A~~~ni~rV~FgG~fiR~~~itM~tL 325 (371)
T KOG2201|consen 249 YSRFGLKGDLIASSFGKVIRKEKELSVSKEDIARSLLRMISNNIGQIAYLCALNENIKRVYFGGFFIRGHPITMKTL 325 (371)
T ss_pred HhhcCCChhHHHHHHHHHhhcccccccChHHHHHHHHHHHHhhHHHHHHHHHHHhCccEEEEeeeEEecCceehHHH
Confidence 1111121 1122222211 1 12345789999999999999999999998888999999999887656655544443
No 57
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=94.97 E-value=2.9 Score=38.39 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=58.5
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHH-HHHHH---HHHHHHHHHhCCCCCCCcCEE
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAART-HIQTI---IPLLSKLLKNSNLELKKIDII 77 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~l---~~~i~~~l~~~~i~~~did~i 77 (339)
.+|-|+-++..++++++++. + .++++.++ |+. .+....+ ..+++ .+.+.+.+++.|.+++++|+|
T Consensus 4 riltINPGststKlaVfe~e-k-~ife~tlr----hs~-----eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~~i~~~dAv 72 (358)
T COG3426 4 RILTINPGSTSTKLAVFEDE-K-EIFEKTLR----HSL-----EELEKFKRIPDQFEFRKDAILEFIDEQGYNISKFDAV 72 (358)
T ss_pred eEEEecCCCccceEEEecCc-h-HhhHHHhh----cCH-----HHHHHHhhhhHhHhHHHHHHHHHHHHhCCCcCCccce
Confidence 47999999999999999987 4 55543221 110 1111111 11121 257888899999999999999
Q ss_pred EEeCC-----CCC-C--c---------------hhHHHHHHHHHHHHhcCCCEE
Q psy9394 78 AYTRG-----PGL-P--G---------------SLLVGSSIACSIALSINKPVI 108 (339)
Q Consensus 78 a~~~g-----PG~-~--t---------------~lr~g~~~ak~la~~~~~p~~ 108 (339)
+--.| ||- | + .-.+|...|..++..+++|-+
T Consensus 73 vgRGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~gvPay 126 (358)
T COG3426 73 VGRGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALGVPAY 126 (358)
T ss_pred eecCccccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcCCCee
Confidence 74322 221 1 0 123555567788888887744
No 58
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=94.82 E-value=0.2 Score=49.79 Aligned_cols=83 Identities=13% Similarity=0.030 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA 311 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a 311 (339)
.+.++++++.+.++-.+.+.++.+.+.. ..+.|.++||-+.|..+++.+.+.+ |.+|.++. +..+.++|+|
T Consensus 363 ~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~----~~e~~~lGaA 435 (465)
T TIGR02628 363 TRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANML---DIPVKVVD----DAETTVAGAA 435 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhc---CCeeEecc----CCcchHHHHH
Confidence 5789999999999999988888876542 3578999999999999999888776 67777665 2235678988
Q ss_pred HHHHHHhcCCCC
Q psy9394 312 GAMRIENNYKSE 323 (339)
Q Consensus 312 ~~~~~~~~~~~~ 323 (339)
....+..|...+
T Consensus 436 ~~a~~a~G~~~~ 447 (465)
T TIGR02628 436 MFGFYGVGEYNS 447 (465)
T ss_pred HHHHHhcCccCC
Confidence 888888876555
No 59
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=94.81 E-value=4.8 Score=41.53 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
+.+.++++.++.+ ++.|+|+||.+.-..+++.+.+.+. ..++.+ ...|..+|.|+|.+.....+.
T Consensus 311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg---~~~~~~---~npdeaVA~GAAi~a~~l~~~ 380 (616)
T PRK05183 311 TLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG---RTPLTS---IDPDKVVAIGAAIQADILAGN 380 (616)
T ss_pred HHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc---cCcCcC---CCchHHHHHHHHHHHHHhccc
Confidence 3444555555543 5689999999999999999988763 322222 456889999999988776664
No 60
>PTZ00297 pantothenate kinase; Provisional
Probab=94.65 E-value=2.1 Score=48.43 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=50.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-hhhhHHHHHHHHHHHHh--C-CcEEEccC
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGG-VGANKQLRKKLNILKKQ--Y-NYTVFYPK 297 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGG-Va~N~~l~~~l~~~l~~--~-~~~v~~~~ 297 (339)
.+.+|||+++...+.+.|-+++--..+.+++++|+|+|+ +--|......|.....- + ..+.++.+
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~ 1430 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLE 1430 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEec
Confidence 468999999999999999999999999999999999999 66677766666544322 2 34555554
No 61
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=94.42 E-value=4.1 Score=41.62 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=40.3
Q ss_pred CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhc
Q psy9394 262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENN 319 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~ 319 (339)
.++.|+|.||.+.-..+.+.|.+.+ +..+..+ ...|.+++.|+|.+....++
T Consensus 328 ~i~~V~lvGG~sr~p~v~~~l~~~f---~~~~~~~---~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 328 DIDSVLLVGGSSRIPYVQEALKELF---GKKISKS---VNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp GESEEEEESGGGGSHHHHHHHHHHT---TSEEB-S---S-TTTHHHHHHHHHHHHHHT
T ss_pred ccceeEEecCcccchhhhhhhhhcc---ccccccc---cccccccccccccchhhhcc
Confidence 4679999999999999999998876 3344333 24588899999998877776
No 62
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.34 E-value=0.27 Score=49.51 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA 311 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a 311 (339)
.+.++++++.+.++-.+...++.+.+..+ ++.|.++||.+.|..+++.+.+.+ |.+|.+++. .+ +.++|+|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~~---~e-~~alGaA 451 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVT---GLPVKVPVV---KE-ATALGCA 451 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhc---CCeeEEecc---cC-chHHHHH
Confidence 46899999999999888888887765334 468999999999999999888876 778877762 22 3567777
Q ss_pred HHHHHHhcCCCC
Q psy9394 312 GAMRIENNYKSE 323 (339)
Q Consensus 312 ~~~~~~~~~~~~ 323 (339)
.+.....|...+
T Consensus 452 ~lA~~~~G~~~~ 463 (520)
T PRK10939 452 IAAGVGAGIYSS 463 (520)
T ss_pred HHHHHHhCCCCC
Confidence 777666665443
No 63
>PLN02295 glycerol kinase
Probab=94.29 E-value=0.33 Score=48.86 Aligned_cols=84 Identities=26% Similarity=0.192 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH-----h--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKN-----T--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNG 305 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~-----~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G 305 (339)
..+.++++++.+.++-.+.+.++.+.+. + ..+.|.++||.+.|..+++.+.+.+ |.+|.++. ...+
T Consensus 376 ~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~---g~pV~~~~----~~e~ 448 (512)
T PLN02295 376 TNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL---GSPVVRPA----DIET 448 (512)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc---CCceEecC----cccc
Confidence 3589999999999999998888887654 1 2568999999999999999998876 67787665 2235
Q ss_pred HHHHHHHHHHHHhcCCCC
Q psy9394 306 AMIAFAGAMRIENNYKSE 323 (339)
Q Consensus 306 ~aiG~a~~~~~~~~~~~~ 323 (339)
.++|+|.+...-.|...+
T Consensus 449 ~alGaA~~A~~~~G~~~~ 466 (512)
T PLN02295 449 TALGAAYAAGLAVGLWTE 466 (512)
T ss_pred HHHHHHHHHHhhcCcCCC
Confidence 677877777666665443
No 64
>PRK04123 ribulokinase; Provisional
Probab=94.21 E-value=0.29 Score=49.70 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcch-hhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGV-GANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGV-a~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
.+.++++++.+.++-.+.+.++.+.+ .+ ++.|.++||. +.|..+++.+.+.+ |..|.++.. ..+.++|+
T Consensus 409 ~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~---g~pV~~~~~----~e~~alGa 480 (548)
T PRK04123 409 DAPDIYRALIEATAFGTRAIMECFED-QGVPVEEVIAAGGIARKNPVLMQIYADVL---NRPIQVVAS----DQCPALGA 480 (548)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCcccCHHHHHHHHHhc---CCceEecCc----cccchHHH
Confidence 57899999999999888888887765 44 4689999999 99999999888876 677766652 23457788
Q ss_pred HHHHHHHhcCCCC
Q psy9394 311 AGAMRIENNYKSE 323 (339)
Q Consensus 311 a~~~~~~~~~~~~ 323 (339)
|....+..|...+
T Consensus 481 A~lA~~~~G~~~~ 493 (548)
T PRK04123 481 AIFAAVAAGAYPD 493 (548)
T ss_pred HHHHHHHhccCCC
Confidence 8777776665544
No 65
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.04 E-value=0.48 Score=46.83 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=66.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
..+.++.+++.+.++-.+.+.++.+.+..+ ++.|.++||-+.|..+++.+.+.+ |.+|..+ . ..+.++|+
T Consensus 356 ~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~----~-~e~~a~Ga 427 (454)
T TIGR02627 356 ESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADAC---GIRVIAG----P-VEASTLGN 427 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHh---CCceEcC----C-chHHHHHH
Confidence 357899999999999988888888866433 578999999999999999998877 6777432 2 23568999
Q ss_pred HHHHHHHhcCCCC
Q psy9394 311 AGAMRIENNYKSE 323 (339)
Q Consensus 311 a~~~~~~~~~~~~ 323 (339)
+.+..+-.|...+
T Consensus 428 A~~a~~~~G~~~~ 440 (454)
T TIGR02627 428 IGVQLMALDEIND 440 (454)
T ss_pred HHHHHHhcCCcCC
Confidence 9988888887666
No 66
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=93.89 E-value=0.45 Score=48.18 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcch-hhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGV-GANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIA 309 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGV-a~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG 309 (339)
..+.++++++.+.++-.+...++.+.+ .| ++.|.++||. +.|..+++.+.+.+ |..|.++.. .+ +.++|
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~---g~pV~~~~~---~e-~~a~G 476 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEELMAAGGIARKNPVIMQIYADVT---NRPLQIVAS---DQ-APALG 476 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEeCCccccCHHHHHHHHHhh---CCeeEeccC---Cc-chhHH
Confidence 357899999999999888888877754 44 4789999999 99999999888876 778877752 23 45788
Q ss_pred HHHHHHHHhcCCCC
Q psy9394 310 FAGAMRIENNYKSE 323 (339)
Q Consensus 310 ~a~~~~~~~~~~~~ 323 (339)
+|.+..+..|...+
T Consensus 477 aA~lA~~~~G~~~~ 490 (536)
T TIGR01234 477 AAIFAAVAAGVYAD 490 (536)
T ss_pred HHHHHHHHcCCcCC
Confidence 88877777776544
No 67
>PLN02295 glycerol kinase
Probab=93.84 E-value=0.27 Score=49.40 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=53.9
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCC----cCEE
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKK----IDII 77 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~d----id~i 77 (339)
.+||||.+|..++++|++.+ +++++...... ..+.+..|.... ....-++.+...++.++++++.++.+ |.+|
T Consensus 1 ~vlgID~GTts~Ka~l~d~~-G~~~~~~~~~~-~~~~~~~G~~Eq-dp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aI 77 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRD-ARPVASHQVEF-TQIYPQAGWVEH-DPMEILESVLTCIAKALEKAAAKGHNVDSGLKAI 77 (512)
T ss_pred CEEEEecCCCceEEEEECCC-CCEEEEEeecc-cccCCCCCcEee-CHHHHHHHHHHHHHHHHHHcCCCccccccceEEE
Confidence 47999999999999999876 68887543221 222333344322 23345667778899999998888777 6888
Q ss_pred EEeC
Q psy9394 78 AYTR 81 (339)
Q Consensus 78 a~~~ 81 (339)
+++.
T Consensus 78 g~s~ 81 (512)
T PLN02295 78 GITN 81 (512)
T ss_pred EEec
Confidence 8764
No 68
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=93.83 E-value=0.18 Score=49.34 Aligned_cols=84 Identities=23% Similarity=0.173 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
..+++|+.++-++++-...++++...+..+ ...+=+-||...|..|.+...+.+ +.+|..|. .....++|+
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil---g~~V~Rp~----~~EtTAlGa 443 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL---GVPVERPV----VLETTALGA 443 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh---CCeeeccc----cchhhHHHH
Confidence 358999999999999999999998888877 578999999999999999999887 77887776 455688899
Q ss_pred HHHHHHHhcCCCC
Q psy9394 311 AGAMRIENNYKSE 323 (339)
Q Consensus 311 a~~~~~~~~~~~~ 323 (339)
|..+-+..|+-.+
T Consensus 444 A~lAGla~G~w~~ 456 (499)
T COG0554 444 AYLAGLAVGFWKD 456 (499)
T ss_pred HHHHhhhhCcCCC
Confidence 8888888887655
No 69
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=93.67 E-value=0.45 Score=46.66 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=57.0
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEE--EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSH--VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA 78 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia 78 (339)
++||+||-++..+-+.+++.+ +++++. +.++| |-|..|.++... ..-++.....++.++.++++++.+|.+|+
T Consensus 5 ~yIlAiDqGTTssRaivfd~~-g~iva~~q~e~~Q---~yP~~GWVEhDp-~eIw~~~~~~l~~a~~~~~i~~~~iaaIG 79 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDED-GNIVAIAQREFTQ---IYPQPGWVEHDP-LEIWASVRSVLKEALAKAGIKPGEIAAIG 79 (499)
T ss_pred cEEEEEecCCcceeEEEECCC-CCchhhhhhhhhh---hCCCCCccccCH-HHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 479999999999999999877 678863 22222 234457666532 34556666789999999999999999999
Q ss_pred EeC
Q psy9394 79 YTR 81 (339)
Q Consensus 79 ~~~ 81 (339)
++.
T Consensus 80 ITN 82 (499)
T COG0554 80 ITN 82 (499)
T ss_pred eec
Confidence 874
No 70
>KOG2517|consensus
Probab=93.67 E-value=0.48 Score=47.13 Aligned_cols=81 Identities=21% Similarity=0.172 Sum_probs=64.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~ 310 (339)
.+.++||.++.++++=...+++....+.. +++++-+.||.+.|..+.+.+.+.+ |..+..|+. -|. .++|+
T Consensus 383 ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~---g~pv~~p~~---~e~-~~~Ga 455 (516)
T KOG2517|consen 383 TSKEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL---GLPVVRPQD---VEA-VALGA 455 (516)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh---CCccccccc---hhH-HHHHH
Confidence 46899999999999988888888777665 5789999999999999999988876 777777763 444 66777
Q ss_pred HHHHHHHhcC
Q psy9394 311 AGAMRIENNY 320 (339)
Q Consensus 311 a~~~~~~~~~ 320 (339)
|......+|.
T Consensus 456 A~l~~~a~~~ 465 (516)
T KOG2517|consen 456 AMLAGAASGK 465 (516)
T ss_pred HHHHHhhcCC
Confidence 7766666665
No 71
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=93.58 E-value=0.68 Score=46.94 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHH
Q psy9394 236 ANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGA 313 (339)
Q Consensus 236 ~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~ 313 (339)
.++.+++.+.++-.+.+.++.+.+ .+ ++.|.++||.+.|..+++.+-+.+ +.+|.++. .. .+.++|+|..
T Consensus 416 ~~~~rAvlEgiaf~~r~~~e~l~~-~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~---~~-e~~alGaA~l 487 (541)
T TIGR01315 416 ALLYYATMEFIAYGTRQIVEAMNT-AGHTIKSIFMSGGQCQNPLLMQLIADAC---DMPVLIPY---VN-EAVLHGAAML 487 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEecCcccCHHHHHHHHHHH---CCeeEecC---hh-HHHHHHHHHH
Confidence 678899999998888888887754 34 568999999999999999998887 77887765 23 3567888888
Q ss_pred HHHHhcCCCC
Q psy9394 314 MRIENNYKSE 323 (339)
Q Consensus 314 ~~~~~~~~~~ 323 (339)
...-.|...+
T Consensus 488 A~~~~G~~~~ 497 (541)
T TIGR01315 488 GAKAAGTTES 497 (541)
T ss_pred HHHhcCccCC
Confidence 7766665443
No 72
>PRK13410 molecular chaperone DnaK; Provisional
Probab=93.55 E-value=11 Score=39.39 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 249 VLTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 249 ~l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
.+...++++++..+ +..|+|+||.+.-..+.+.+.+.+ +..+.. ....|.+++.|+|.+..+.++.
T Consensus 310 r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f---g~~~~~---~~npdeaVA~GAAi~aa~ls~~ 380 (668)
T PRK13410 310 RLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI---PREPNQ---NVNPDEVVAVGAAIQAGILAGE 380 (668)
T ss_pred HHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc---CCCccc---CCCCchHHHHhHHHHHHhhccc
Confidence 34444455554443 569999999999999999998865 332221 1345789999999988777764
No 73
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=93.39 E-value=0.36 Score=48.94 Aligned_cols=76 Identities=11% Similarity=0.182 Sum_probs=53.1
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+||||.++..++++|++.+ +++++..... .+.+.+..|.... ....-.+.+...+++++++++++.++|..|+++.
T Consensus 2 ~lgID~GTts~Ka~l~d~~-G~i~~~~~~~-~~~~~~~~g~~eq-dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~ 77 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST-GDILALAAQN-IKTWTPSSGLEGQ-SSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDA 77 (541)
T ss_pred EEEEEecCcCEEEEEEcCC-CCEEEEEEee-eeeccCCCCcccC-CHHHHHHHHHHHHHHHHHHcCCChhheEEEEecc
Confidence 7999999999999999876 6888764321 1222222233221 2233456677888999999888888899999885
No 74
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=93.33 E-value=0.59 Score=39.61 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=37.6
Q ss_pred CEEEEEecCCCceeEEEEECCCCc---eeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKN---LRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDII 77 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~---i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~i 77 (339)
|+|||||.|...++.++++.+ ++ ++....+.. . -.+.+ .++...+...+..++++. ++|.+
T Consensus 2 m~iLGIDPgl~~tG~avi~~~-~~~~~~~~~G~i~t---~--~~~~~-----~~Rl~~I~~~l~~~i~~~-----~Pd~v 65 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVE-GRRLSYVASGVIRT---P--SDLDL-----PERLKQIYDGLSELIDEY-----QPDEV 65 (164)
T ss_pred CEEEEEccccCceeEEEEEec-CCeEEEEEeeEEEC---C--CCCCH-----HHHHHHHHHHHHHHHHHh-----CCCEE
Confidence 899999999999999999854 33 222222211 1 11111 233455556777777754 55667
Q ss_pred EE
Q psy9394 78 AY 79 (339)
Q Consensus 78 a~ 79 (339)
++
T Consensus 66 ai 67 (164)
T PRK00039 66 AI 67 (164)
T ss_pred EE
Confidence 65
No 75
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=93.19 E-value=0.54 Score=47.17 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=52.6
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCC--CcCEEEE
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELK--KIDIIAY 79 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~--did~ia~ 79 (339)
.+||||.++..++++|++.+ +++++..+... +...+..|.... ....-++.+...+++++++.+.++. +|.+|++
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~-G~~v~~~~~~~-~~~~~~~g~~eq-d~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgi 79 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEK-GNVVSSHQIPH-EQITPHPGWLEH-DPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGI 79 (504)
T ss_pred EEEEEecCCCceEEEEECCC-CCEEEEEEEee-cccCCCCCeEee-CHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEe
Confidence 48999999999999999987 67887654322 222333333221 2234466677788888888877666 7888887
Q ss_pred eC
Q psy9394 80 TR 81 (339)
Q Consensus 80 ~~ 81 (339)
+.
T Consensus 80 s~ 81 (504)
T PTZ00294 80 TN 81 (504)
T ss_pred ec
Confidence 64
No 76
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=93.10 E-value=0.49 Score=47.70 Aligned_cols=78 Identities=9% Similarity=0.127 Sum_probs=53.2
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccc-cccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVH-KEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~-~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
.+||||.++..++++|++.+ +++++.......... .+..|.... .....++.+...++++++++++.+.+|.+|+++
T Consensus 4 ~~lgID~GTts~Ka~l~d~~-G~~l~~~~~~~~~~~~~~~~g~~Eq-d~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s 81 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLN-GNQIAVGQAEWRHLAVPDVPGSMEF-DLEKNWQLACQCIRQALQKAGIPASDIAAVSAT 81 (520)
T ss_pred EEEEEecCCCceEEEEECCC-CCEEEEEeccccccCCCCCCCCeeE-CHHHHHHHHHHHHHHHHHHcCCCccceEEEEEE
Confidence 48999999999999999987 678876432210010 122232221 223456777788999998888888889999886
Q ss_pred C
Q psy9394 81 R 81 (339)
Q Consensus 81 ~ 81 (339)
.
T Consensus 82 ~ 82 (520)
T PRK10939 82 S 82 (520)
T ss_pred C
Confidence 3
No 77
>PRK00047 glpK glycerol kinase; Provisional
Probab=93.05 E-value=0.51 Score=47.24 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=53.0
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
.+||||.++..++++|++.+ +++++..... ...+.+..|... -....-.+.+...++++++++++++.+|..|+++.
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~-g~~~~~~~~~-~~~~~~~~g~~e-~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~ 82 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHD-GNIVSVAQKE-FTQIFPQPGWVE-HDPNEIWASQLSVIAEALAKAGISPDQIAAIGITN 82 (498)
T ss_pred EEEEEecCCCceEEEEECCC-CCEEEEEeee-ccccCCCCCeEe-eCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEec
Confidence 47999999999999999876 6788764321 122222223211 11234567777899999999998888899999864
No 78
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.96 E-value=0.62 Score=46.79 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccC
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTGI--NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~~--~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~ 297 (339)
.+.++++++.+.++-.+...+..+.+-.+. +.|.++||-+.|..+++.+-+.+ |.+|.+++
T Consensus 371 ~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~---g~~v~~~~ 433 (502)
T COG1070 371 TRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADAL---GLPVVVPE 433 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHHHHHHHHHc---CCeeEecC
Confidence 467899999999888888888877766454 46999999999999999998876 78888776
No 79
>PLN02669 xylulokinase
Probab=92.87 E-value=0.71 Score=46.97 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGA 313 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~ 313 (339)
++.++++++.+.++-.+...++.+......+.|.++||.+.|..+++.+.+.+ |..|+++.. +++.++|+|..
T Consensus 417 ~~~~~~RAvlEg~a~~~r~~~~~l~~~~~~~~i~~~GGgs~s~~w~Qi~ADVl---g~pV~~~~~----~ea~alGAA~~ 489 (556)
T PLN02669 417 DPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIATGGASANQSILKLIASIF---GCDVYTVQR----PDSASLGAALR 489 (556)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcChhcCHHHHHHHHHHc---CCCeEecCC----CCchHHHHHHH
Confidence 56788888888887777777666642223578999999999999999999887 667777652 23345565443
No 80
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=92.74 E-value=13 Score=38.17 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=41.4
Q ss_pred CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
.++.|+|+||.+.-..+++.+.+.+ +.+++.+ ...|..++.|+|.+.....+.
T Consensus 308 ~Id~ViLvGGssriP~v~~~l~~~f---~~~~~~~---~npdeaVA~GAAi~a~~l~~~ 360 (595)
T PRK01433 308 NIDGVILVGGATRIPLIKDELYKAF---KVDILSD---IDPDKAVVWGAALQAENLIAP 360 (595)
T ss_pred cCcEEEEECCcccChhHHHHHHHHh---CCCceec---CCchHHHHHHHHHHHHHhhCC
Confidence 4789999999999999999998876 4444433 245889999999988766553
No 81
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=92.50 E-value=0.68 Score=46.32 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=53.1
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
.+||||.++..++++|++.+ ++++...+... ..+.+..|... .....-.+.+...++.+++++++.+++|..|+++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~-g~~l~~~~~~~-~~~~~~~g~~e-~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~ 78 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD-GNIVAIHQKEF-TQIFPKPGWVE-HDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITN 78 (493)
T ss_pred eEEEEecCCCceEEEEECCC-CCEEEEEeeec-cccCCCCCcEe-eCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEec
Confidence 58999999999999999876 67887654321 11122223221 12234567777889999999998888899998753
No 82
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.49 E-value=1.1 Score=44.99 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=55.4
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+++||||.++..+++++++.+.++++...+... ....+..|.... ....-++.+...++++++++.+.+.+|.+|+++
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~-~~~~~~~g~~e~-d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~is 81 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDEDGGEVVATARFEN-PVSTPQPGWAEQ-DPDELWQAILEALRQLLEESKIDPDAIAAIGIS 81 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccc-cccCCCCCCccc-CHHHHHHHHHHHHHHHHHhcccChhhceEEEEe
Confidence 379999999999999999866134665543321 112223232221 234456677789999999998888899999876
Q ss_pred C-CCCC
Q psy9394 81 R-GPGL 85 (339)
Q Consensus 81 ~-gPG~ 85 (339)
. +.|.
T Consensus 82 ~~~~g~ 87 (502)
T COG1070 82 GQGHGL 87 (502)
T ss_pred ccccce
Confidence 4 3544
No 83
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=92.33 E-value=15 Score=37.79 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=45.5
Q ss_pred HHHHHHHHHHh-----CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 251 TFKCIAALKNT-----GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 251 ~~~~~~~~~~~-----~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
.+.++++++.. .++.|+|+||.+....+.+.+.+.+. ..++.+ ..-|..++.|+|.+.....+.
T Consensus 296 ~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~---~~~~~~---~npdeaVA~GAai~a~~l~~~ 364 (599)
T TIGR01991 296 LSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG---QEPLTD---IDPDQVVALGAAIQADLLAGN 364 (599)
T ss_pred HHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC---CCCCCC---CCCcHHHHHHHHHHHHHhccc
Confidence 34444444443 35789999999999999999998763 333222 345889999999988776654
No 84
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=92.26 E-value=0.48 Score=38.77 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=56.8
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEE--EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSH--VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA 78 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia 78 (339)
|.+||||-++..+++|+.+.. + .++. ..+.+. ........+..++++- .++.|+
T Consensus 1 mriL~lD~G~kriGiAvsd~~-~-~~a~pl~~i~~~-----------------~~~~~~~~l~~li~~~-----~i~~iV 56 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL-G-IIASPLETIPRR-----------------NREKDIEELKKLIEEY-----QIDGIV 56 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT-T-SSEEEEEEEEEC-----------------CCCCCHHHHHHHHHHC-----CECEEE
T ss_pred CeEEEEEeCCCeEEEEEecCC-C-CeEeeeEEEECC-----------------CCchHHHHHHHHHHHh-----CCCEEE
Confidence 899999999999999999987 4 4442 222221 0022334455555543 578888
Q ss_pred EeCC---CCCCc-hhHHHHHHHHHHHHhc-CCCEEeecchhH
Q psy9394 79 YTRG---PGLPG-SLLVGSSIACSIALSI-NKPVIGINHLEG 115 (339)
Q Consensus 79 ~~~g---PG~~t-~lr~g~~~ak~la~~~-~~p~~~v~h~~a 115 (339)
++.- -|..+ -.+....|++.|+... ++|++.+++-..
T Consensus 57 vGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 57 VGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp EEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred EeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 7631 13332 2445566888888887 899887776543
No 85
>PRK04123 ribulokinase; Provisional
Probab=91.91 E-value=0.88 Score=46.15 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=51.8
Q ss_pred EEEEEecCCCceeEEEEE-CCCCceeEEEEeeecccc------cccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy9394 2 IILGIESSCDDSGLALYD-THIKNLRSHVICSQNLVH------KEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKI 74 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~-~~~~~i~~~~~~~~~~~~------~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~di 74 (339)
++||||.++..++++|++ ++ +++++...... +.. .+..|.... ....-++.+...++.+++++++++.+|
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~-g~~~~~~~~~~-~~~~~~~~~~~~~g~~Eq-dp~~~w~~~~~~i~~~~~~~~~~~~~I 80 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCAT-GEELATAVVEY-PHWVKGRYLDLPPNQALQ-HPLDYIESLEAAIPAVLKEAGVDPAAV 80 (548)
T ss_pred EEEEEecCCCceEEEEEECCC-CcEeEEEEeec-cccccccccCCCCCceee-CHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence 489999999999999999 36 67887643221 111 122232211 122335667778888999889888889
Q ss_pred CEEEEeC
Q psy9394 75 DIIAYTR 81 (339)
Q Consensus 75 d~ia~~~ 81 (339)
..|+++.
T Consensus 81 ~aIgis~ 87 (548)
T PRK04123 81 VGIGVDF 87 (548)
T ss_pred EEEEEec
Confidence 9999875
No 86
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=17 Score=37.27 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=42.1
Q ss_pred CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCCC
Q psy9394 262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKS 322 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~ 322 (339)
.++.|+++||...=..+.+.+.+.+. -++ .....-|...++|++.......+...
T Consensus 309 ~I~~VilvGGstriP~V~~~v~~~f~---~~~---~~~inpdeava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 309 DIDLVILVGGSTRIPAVQELVKEFFG---KEP---EKSINPDEAVALGAAIQAAVLSGEVP 363 (579)
T ss_pred hCceEEEccceeccHHHHHHHHHHhC---ccc---cccCCccHHHHHHHHHHHHhhcCccc
Confidence 47899999999999999999988752 111 12245578899999999888887654
No 87
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=91.65 E-value=9.8 Score=34.20 Aligned_cols=134 Identities=14% Similarity=0.180 Sum_probs=74.2
Q ss_pred eeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCcccCCC-ccccCCCeeeecchH--
Q psy9394 140 HTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYKFPR-PMLYTNNFNFSFSGL-- 215 (339)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~~~~-~l~~~~~~~~~~~~l-- 215 (339)
...+..+.+...++.++..- -.-|.++.-.+-+-+. +|. .|-.+|..|+....+.-+ .++.. ++.--++
T Consensus 155 GvSilkvtgpsqf~RvGGss-lGGGtlwGLlsLlt~a~~yd---qmld~aq~GDn~svDmlVgdIYg~---dy~~~glks 227 (342)
T COG5146 155 GVSILKVTGPSQFERVGGSS-LGGGTLWGLLSLLTQATDYD---QMLDMAQHGDNNSVDMLVGDIYGD---DYEEPGLKS 227 (342)
T ss_pred CeEEEEecCcchhccccccc-cCcchHHHHHHHHcccccHH---HHHHHHhcCCCccceeeehhhccC---ccccCCCCc
Confidence 35566666666665554421 2334555544433333 233 565688877753221110 01100 0111111
Q ss_pred ---HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHH
Q psy9394 216 ---KTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRK 280 (339)
Q Consensus 216 ---~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~ 280 (339)
.+.+-..+..+.++.++..+.||++++--++.+.+-.++--.+++.+..||++.|---.|..+..
T Consensus 228 ~~iAssFGkVf~~r~k~le~F~p~di~~sll~aisnnigqiAyl~A~~~n~qNIyfgGSf~rnhl~tm 295 (342)
T COG5146 228 DLIASSFGKVFHHRDKPLEEFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIYFGGSFHRNHLLTM 295 (342)
T ss_pred hhhHHHHHHHHHhhcCchhhcCcHHHHHHHHHHHhcchhhhHHHHHHhhccceEEEeeeeccchhhhh
Confidence 22334444443323344578999999999999999999888888899999999874334444443
No 88
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=91.44 E-value=2.1 Score=35.09 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=55.4
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEE--EeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHV--ICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA 78 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia 78 (339)
|.+||||-+...+++|+.+.. + .++.- .+.+ +........+..++++. +++.|+
T Consensus 4 ~~iLalD~G~kriGvAv~d~~-~-~~a~pl~~i~~-----------------~~~~~~~~~l~~~i~~~-----~i~~iV 59 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL-G-GTAQPLETIKR-----------------NNGTPDWDRLEKLIKEW-----QPDGLV 59 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC-C-CEEcCEEEEEc-----------------CCCchHHHHHHHHHHHh-----CCCEEE
Confidence 789999999999999999876 3 44431 2211 00111234555666653 467888
Q ss_pred EeC--C-CCCCch-hHHHHHHHHHHHHhcCCCEEeecchhHHh
Q psy9394 79 YTR--G-PGLPGS-LLVGSSIACSIALSINKPVIGINHLEGHL 117 (339)
Q Consensus 79 ~~~--g-PG~~t~-lr~g~~~ak~la~~~~~p~~~v~h~~aHa 117 (339)
++. . -|..+. -+....|++.|....++|++.+++...-.
T Consensus 60 vGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~ 102 (138)
T PRK00109 60 VGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTV 102 (138)
T ss_pred EeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHH
Confidence 762 1 122211 23334577788777788888777654433
No 89
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=91.29 E-value=0.93 Score=45.88 Aligned_cols=77 Identities=6% Similarity=-0.016 Sum_probs=52.1
Q ss_pred EEEEEecCCCceeEEEEE-CCCCceeEEEEeeecc-----ccccc------CCccchHHHHHHHHHHHHHHHHHHHhCCC
Q psy9394 2 IILGIESSCDDSGLALYD-THIKNLRSHVICSQNL-----VHKEY------GGVVPELAARTHIQTIIPLLSKLLKNSNL 69 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~-~~~~~i~~~~~~~~~~-----~~~~~------~G~~~~~~~~~~~~~l~~~i~~~l~~~~i 69 (339)
++||||.+|..+.++|++ .+ +++++..... .+ ...+. .|.... ....-++.+...++++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~-G~~~a~~~~~-~~~~~~~~~~~~~~~~~~~g~~Eq-dp~~~w~~~~~~~~~~~~~~~~ 78 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVAT-GEEIATAVEW-YRHWVKGQFLPKTGAKLPNDQALQ-HPADYIEVLEAAIPTVLAELGV 78 (536)
T ss_pred eEEEEecCCCceEEEEEECCC-CcEeeeeeec-cccccccccCCCccccCCCCcccc-CHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999999 65 5788754221 11 01121 121111 2234466677889999999888
Q ss_pred CCCCcCEEEEeC
Q psy9394 70 ELKKIDIIAYTR 81 (339)
Q Consensus 70 ~~~did~ia~~~ 81 (339)
++.+|.+|+++.
T Consensus 79 ~~~~I~aI~~s~ 90 (536)
T TIGR01234 79 DPADVVGIGVDF 90 (536)
T ss_pred CHHHEEEEEEec
Confidence 878899999874
No 90
>PRK15027 xylulokinase; Provisional
Probab=90.39 E-value=1.3 Score=44.25 Aligned_cols=75 Identities=9% Similarity=0.086 Sum_probs=48.7
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
++||||.+|..++++|++.+ +++++...... ++..+..|.... ....-++.+...+++++++. ..++|.+|+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~-G~vva~~~~~~-~~~~~~~g~~eq-d~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~ 75 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQ-GEVVASQTEKL-TVSRPHPLWSEQ-DPEQWWQATDRAMKALGDQH--SLQDVKALGIAG 75 (484)
T ss_pred CEEEEEecccceEEEEEcCC-CCEEEEEeecc-cccCCCCCcccc-CHHHHHHHHHHHHHHHHHhC--CccceeEEEEec
Confidence 47999999999999999987 78987653221 222222232221 22334556667777777765 346799999874
No 91
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=90.25 E-value=0.87 Score=45.20 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=54.4
Q ss_pred EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC-C
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR-G 82 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~-g 82 (339)
||||.++..++++|++.+ ++++.+..... +.+.+..|... .......+.+...+++++++.++++.+|..|+++. .
T Consensus 1 lgIDiGtt~ik~~l~d~~-g~i~~~~~~~~-~~~~~~~g~~e-~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~ 77 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ-GEVIASGSAPH-TVISPHPGWSE-QDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQM 77 (481)
T ss_pred CceeecCcceEEEEECCC-CCEEEEEeecc-cccCCCCCCee-eCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCC
Confidence 589999999999999876 67887654322 22112222211 12234566677889999999998888999999873 4
Q ss_pred CCCC
Q psy9394 83 PGLP 86 (339)
Q Consensus 83 PG~~ 86 (339)
||..
T Consensus 78 ~g~v 81 (481)
T TIGR01312 78 HGLV 81 (481)
T ss_pred ceeE
Confidence 5543
No 92
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=89.81 E-value=1.9 Score=43.27 Aligned_cols=76 Identities=9% Similarity=0.233 Sum_probs=50.9
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
++||||.++..++++|++.+ +++++..... .+.+.+..|.... ......+.+...+++++++.+.+ .+|..|+++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~-g~i~~~~~~~-~~~~~~~~g~~e~-d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~ 76 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEEN-GKIVAKSSIG-YPLYTPASGMAEE-NPEEIFEAVLVTIREVSINLEDE-DEILFVSFST 76 (505)
T ss_pred CEEEEeccccceEEEEEcCC-CCEEEEEEee-cccccCCCCCeee-CHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEec
Confidence 37999999999999999887 7788765432 1221211222211 12344666778888888877765 6799999864
No 93
>PLN02669 xylulokinase
Probab=89.33 E-value=1.3 Score=45.05 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=47.5
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccC---CccchHH-------HH-HHHHHHHHHHHHHHHhCCCC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYG---GVVPELA-------AR-THIQTIIPLLSKLLKNSNLE 70 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~---G~~~~~~-------~~-~~~~~l~~~i~~~l~~~~i~ 70 (339)
.+||||.||..++++|++.+ +++++......-.....|+ |...... .- .-.+.+..+++++. +++++
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~-g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~~ 86 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSN-LRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKFP 86 (556)
T ss_pred eEEEEecccCCeEEEEEcCC-CCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCCC
Confidence 58999999999999999977 7888765332210011121 2222111 00 12255556677765 56777
Q ss_pred CCCcCEEEEe
Q psy9394 71 LKKIDIIAYT 80 (339)
Q Consensus 71 ~~did~ia~~ 80 (339)
+++|.+|+++
T Consensus 87 ~~~I~aIs~s 96 (556)
T PLN02669 87 FHKVVAISGS 96 (556)
T ss_pred hhhEEEEEec
Confidence 7889999887
No 94
>PRK10331 L-fuculokinase; Provisional
Probab=89.32 E-value=2 Score=42.61 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=48.3
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeec-ccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQN-LVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
.+||||.+|..++++|++.+ +++++..+.... ....+..|.... ....-++.+...+++++++. ...+|..|+++
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~-G~~~~~~~~~~~~~~~~~~~g~~eq-d~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is 78 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ-GKIVARASTPNASDIAAENSDWHQW-SLDAILQRFADCCRQINSEL--TECHIRGITVT 78 (470)
T ss_pred eEEEEecCCCceEEEEEcCC-CcEEEEEecccccccCCCCCCCccc-CHHHHHHHHHHHHHHHHHhC--CccceEEEEEe
Confidence 47999999999999999977 678876543211 012222232211 12334566667788887754 34579999887
Q ss_pred C
Q psy9394 81 R 81 (339)
Q Consensus 81 ~ 81 (339)
.
T Consensus 79 ~ 79 (470)
T PRK10331 79 T 79 (470)
T ss_pred c
Confidence 5
No 95
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=88.74 E-value=2.2 Score=42.36 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=48.1
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeee-cccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQ-NLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
.+||||.+|..++++|++.+ +++++..+... .....+..|.... ....-++.+...+++++++ +.+.+|.+|+++
T Consensus 2 ~ilgiD~GTss~K~~l~d~~-g~~va~~~~~~~~~~~~~~~g~~eq-d~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s 77 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ-GKIVASASTPNATKQAIENNDYHIW-DLEAIWQKLADCCQQINSE--LTEKHIRGIAVT 77 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC-CCEEEEEecccccCCCCCCCCceee-CHHHHHHHHHHHHHHHHhh--cChhceEEEEEe
Confidence 58999999999999999987 78887654321 0112223343221 1223455566677777653 455679999986
Q ss_pred C
Q psy9394 81 R 81 (339)
Q Consensus 81 ~ 81 (339)
.
T Consensus 78 ~ 78 (465)
T TIGR02628 78 T 78 (465)
T ss_pred c
Confidence 4
No 96
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=88.48 E-value=4.1 Score=33.58 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=52.5
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEE--EeeecccccccCCccchHHHHHHHH-HHHHHHHHHHHhCCCCCCCcCEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHV--ICSQNLVHKEYGGVVPELAARTHIQ-TIIPLLSKLLKNSNLELKKIDII 77 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~-~l~~~i~~~l~~~~i~~~did~i 77 (339)
|.+||+|-++..+++|+-+.. + .++.. .+.+ +... .-...+..++++. +++.|
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~-~-~~A~pl~~i~~-----------------~~~~~~~~~~l~~li~~~-----~~~~v 57 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL-G-SLASPLETIKR-----------------KNGKPQDFNALLKLVKEY-----QVDTV 57 (141)
T ss_pred ceEEEEecCCceEEEEEecCC-C-ccccchhhhee-----------------ccccHhhHHHHHHHHHHh-----CCCEE
Confidence 789999999999999999876 3 44321 1111 0111 1234455555543 67888
Q ss_pred EEeC--CCCCCchhHH--HHHHHHHHHHhcCCCEEeecch
Q psy9394 78 AYTR--GPGLPGSLLV--GSSIACSIALSINKPVIGINHL 113 (339)
Q Consensus 78 a~~~--gPG~~t~lr~--g~~~ak~la~~~~~p~~~v~h~ 113 (339)
+++. +.-..++.|. ...|++.|....++|++.+++=
T Consensus 58 VVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 58 VVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred EEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 8753 1122233343 4457777777777777665543
No 97
>PRK13321 pantothenate kinase; Reviewed
Probab=88.06 E-value=1.8 Score=39.33 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=41.7
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+|+||.++..+++++++++ +++...++.... .+....+...+..++++.+.++++++.|+++
T Consensus 2 iL~IDIGnT~ik~gl~~~~--~i~~~~~~~T~~--------------~~~~~~~~~~l~~l~~~~~~~~~~i~~i~vs 63 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD--RLLRSFRLPTDK--------------SRTSDELGILLLSLFRHAGLDPEDIRAVVIS 63 (256)
T ss_pred EEEEEECCCeEEEEEEECC--EEEEEEEEecCC--------------CCCHHHHHHHHHHHHHHcCCChhhCCeEEEE
Confidence 5899999999999999977 576543321100 0111345566777788777777788887664
No 98
>PRK13318 pantothenate kinase; Reviewed
Probab=86.94 E-value=2.6 Score=38.31 Aligned_cols=67 Identities=24% Similarity=0.286 Sum_probs=44.1
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC-
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR- 81 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~- 81 (339)
+|+||.+...+++++++++ +++...++.... ......+...++.+++..++++.+++.|+++.
T Consensus 2 iL~IDIGnT~iK~al~d~g--~i~~~~~~~t~~--------------~~~~~~~~~~l~~l~~~~~~~~~~i~~I~issV 65 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG--KLVAHWRISTDS--------------RRTADEYGVWLKQLLGLSGLDPEDITGIIISSV 65 (258)
T ss_pred EEEEEECCCcEEEEEEECC--EEEEEEEEeCCC--------------CCCHHHHHHHHHHHHHHcCCCcccCceEEEEEe
Confidence 6899999999999999966 676543321100 00112244567778888887777898887653
Q ss_pred CCCC
Q psy9394 82 GPGL 85 (339)
Q Consensus 82 gPG~ 85 (339)
-|+.
T Consensus 66 vp~~ 69 (258)
T PRK13318 66 VPSV 69 (258)
T ss_pred cCch
Confidence 3654
No 99
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=86.75 E-value=44 Score=34.92 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
+.+.+++++++.+ ++.|+|+||.+.-..+++.+.+.+. .++... ...|..++.|++.+.....+.
T Consensus 350 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~---~~~~~~---~npdeaVA~GAAi~aa~l~~~ 419 (663)
T PTZ00400 350 TIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG---KEPSKG---VNPDEAVAMGAAIQAGVLKGE 419 (663)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC---CCcccC---CCCccceeeccHHHHHhhcCC
Confidence 3344444444443 5799999999999999999988763 332221 345778999999888776664
No 100
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=86.69 E-value=6.7 Score=32.71 Aligned_cols=63 Identities=17% Similarity=0.345 Sum_probs=35.5
Q ss_pred EEEEEecCCCceeEEEEECCCCc--eeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 2 IILGIESSCDDSGLALYDTHIKN--LRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~--i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
+|||||-|...++.|+++...++ ++....+.. .+. .+. ......+...+.+++++. ++|.+++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t---~~~----~~~---~~rl~~I~~~l~~~i~~~-----~Pd~vai 65 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRT---SSD----APL---PSRLKTIYDGLNEVIDQF-----QPDVVAI 65 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEeeEEEC---CCC----CCH---HHHHHHHHHHHHHHHHHh-----CCCEEEE
Confidence 48999999999999999743122 222222211 111 111 223444666777777753 4566665
No 101
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.60 E-value=3.5 Score=42.59 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 249 VLTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 249 ~l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
.+.+.++++++..+ ++.|+|+||.+.-..+.+.+.+.+ +.++..+ ...|..++.|+|.+.....+.
T Consensus 308 ~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f---g~~~~~~---~npdeava~GAa~~aa~l~~~ 378 (627)
T PRK00290 308 RTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF---GKEPNKG---VNPDEVVAIGAAIQGGVLAGD 378 (627)
T ss_pred HHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh---CCCCCcC---cCChHHHHHhHHHHHHHhcCC
Confidence 33444455554443 679999999999999999998876 3333222 356889999999988777664
No 102
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=86.29 E-value=3.4 Score=37.41 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=56.6
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
++|||.+.+...+++++.+ ++++.++++.. |.. ..+.+...+..++++.......+..|+++.
T Consensus 2 ~lgidiggt~i~~~l~d~~-g~i~~~~~~~~-----------~~~----~~~~~~~~i~~~i~~~~~~~~~~~gIgv~~- 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDEN-LQRIWHKRVPT-----------PRE----DYPQLLQILRDLTEEADTYCGVQGSVGIGI- 64 (256)
T ss_pred EEEEEECCCcEEEEEECCC-CCEEEEEEecC-----------CCc----CHHHHHHHHHHHHHHHHhhcCCCceEEEEe-
Confidence 5999999999999999876 67887654321 100 012233344444444322222234555542
Q ss_pred CCCC---chh--------HHHHHHHHHHHHhcCCCEEeecchhHHhhhc
Q psy9394 83 PGLP---GSL--------LVGSSIACSIALSINKPVIGINHLEGHLLSP 120 (339)
Q Consensus 83 PG~~---t~l--------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~ 120 (339)
||.. ++. ..+..+.+.+...++.|++--+--.+.|++-
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE 113 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSE 113 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHH
Confidence 4422 110 1123456777777899988777666666543
No 103
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.92 E-value=3.7 Score=37.07 Aligned_cols=66 Identities=27% Similarity=0.457 Sum_probs=44.7
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|+.+|||-++.-.++|+.+++ +...++- -+. ..++-.+ -..++.+-+++++...|+|.||.+
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e-~~~~Fkl--gra-------------e~~~~~e--k~~L~~l~de~~i~l~eidlialt 64 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGE-KDPEFKL--GRA-------------ELRKVAE--KSLLRELEDEARIALEEIDLIALT 64 (332)
T ss_pred eEEEeecCCCcceEEEEEcCC-CCceEEe--chh-------------hhhhhhH--HHHHHHhhHhhCCccccceEEEEe
Confidence 788999999999999999976 4444431 110 0011111 235667778888999999999987
Q ss_pred CCCC
Q psy9394 81 RGPG 84 (339)
Q Consensus 81 ~gPG 84 (339)
.+-|
T Consensus 65 YsMG 68 (332)
T COG4020 65 YSMG 68 (332)
T ss_pred eccc
Confidence 6544
No 104
>PRK13331 pantothenate kinase; Reviewed
Probab=85.47 E-value=3.1 Score=37.83 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGG 271 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGG 271 (339)
...+.|..++.......+-.+++++.++.+...|+++||
T Consensus 174 nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~vi~TGG 212 (251)
T PRK13331 174 NTQEAIQSGVIYTILAGLRDFIEDWLSLFPDGKIVLTGG 212 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 355667777778888888888888888877668999999
No 105
>CHL00094 dnaK heat shock protein 70
Probab=85.46 E-value=4.1 Score=42.05 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=40.8
Q ss_pred CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
.++.|+|+||.+....+++.+.+.+ |.++... ...|.+++.|+|.+..+..+.
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~f---g~~~~~~---~~pdeava~GAA~~aa~ls~~ 380 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLL---GKKPNQS---VNPDEVVAIGAAVQAGVLAGE 380 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHh---CCCcCcC---CCchhHHHhhhHHHHHHhcCC
Confidence 3579999999999999999998876 3332222 345888999999988777764
No 106
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=85.34 E-value=5.3 Score=37.72 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhC-------CC-eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 249 VLTFKCIAALKNTG-------IN-KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 249 ~l~~~~~~~~~~~~-------~~-~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
.+++.+++..++.+ .+ .|+|+||.++=..+.+.+.+.+ +.++.+.. .-+..++.|++.+.
T Consensus 254 ~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~---~~~v~~~~---~P~~ava~Gaa~~~ 321 (336)
T PRK13928 254 AIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET---KVPVYIAE---DPISCVALGTGKML 321 (336)
T ss_pred HHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH---CCCceecC---CHHHHHHHHHHHHH
Confidence 34444455554443 23 6999999999999999998876 45555443 23566888887775
No 107
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=84.82 E-value=4.7 Score=41.39 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
+.+.++++++..+ ++.|+|+||.+.-..+++.+.+.+ +..+..+ ...|..++.|+|.+.....+.
T Consensus 307 ~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f---~~~~~~~---~~pdeava~GAa~~aa~l~~~ 376 (595)
T TIGR02350 307 TKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF---GKEPNKS---VNPDEVVAIGAAIQGGVLKGD 376 (595)
T ss_pred HHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh---CCcccCC---cCcHHHHHHHHHHHHHHhcCC
Confidence 3444444444433 579999999999999999998876 3333322 356889999999988776664
No 108
>PRK13324 pantothenate kinase; Reviewed
Probab=84.45 E-value=17 Score=33.11 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=44.8
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE-eC
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY-TR 81 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~-~~ 81 (339)
+|.||.++..++.++.+++ +++...++...+ ..+....+...+..++++.++++.+++.+++ +.
T Consensus 2 iL~iDiGNT~ik~gl~~~~--~~~~~~r~~t~~-------------~~~t~de~~~~l~~~~~~~~~~~~~i~~viisSV 66 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD--RIVSQIRYATSS-------------VDSTSDQMGVFLRQALRENSVDLGKIDGCGISSV 66 (258)
T ss_pred EEEEEeCCCceEEEEEECC--EEEEEEEEecCc-------------cccchHHHHHHHHHHHHhcCCCccCCCeEEEEeC
Confidence 7999999999999999977 566543332201 0122334555677888888888888886654 44
Q ss_pred CCC
Q psy9394 82 GPG 84 (339)
Q Consensus 82 gPG 84 (339)
-|-
T Consensus 67 vP~ 69 (258)
T PRK13324 67 VPH 69 (258)
T ss_pred cch
Confidence 463
No 109
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=84.24 E-value=57 Score=34.05 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=40.7
Q ss_pred CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
.+..|+|+||.+.-..+++.+.+.+. ..... ...-|..+++|+|.+..+..+.
T Consensus 353 dId~VvLVGGssriP~V~~~l~~~fg---~~~~~---~~nPdeaVA~GAAi~a~~l~~~ 405 (657)
T PTZ00186 353 EINDVVLVGGMTRMPKVVEEVKKFFQ---KDPFR---GVNPDEAVALGAATLGGVLRGD 405 (657)
T ss_pred hCCEEEEECCcccChHHHHHHHHHhC---CCccc---cCCCchHHHHhHHHHHHHhccc
Confidence 36799999999999999999998763 22221 2456788999999998776664
No 110
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=83.91 E-value=34 Score=31.23 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy9394 232 KKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVG 270 (339)
Q Consensus 232 ~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laG 270 (339)
.....|+|-.+-+.+...+.+.+....+++|.+.|+-+|
T Consensus 248 ~~~v~d~A~~~~~~~l~~l~e~I~~~a~r~gL~~Vv~~G 286 (330)
T COG1548 248 EEEVIDLAEKAYNALLELLAENIEEKAKRYGLNTVVATG 286 (330)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhhcc
Confidence 446789999999999999999999999999999998877
No 111
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=83.51 E-value=4.8 Score=34.47 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=44.6
Q ss_pred EEEecCCCceeEEEEECCCCceeEE-EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSH-VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~-~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+|||.+...+=+++++++ ..++.. +..|. ...-...+...+++++++.++++++++.|.++
T Consensus 2 igIDvGGT~TD~v~~d~~-~~~~~~~K~~Tt---------------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~g 63 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED-TGVVATAKVPTT---------------PDDPAEGILEALDALLEESGIDPSDIDRVRHG 63 (176)
T ss_pred eeEecCCCcEEEEEEeCC-CCEEEEEEeCCC---------------CcCHHHHHHHHHHhhhcccCCChhhCcEEEec
Confidence 699999998988888876 345543 33322 12345667889999999999988899888765
No 112
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=83.28 E-value=6.6 Score=36.99 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=34.8
Q ss_pred eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
+|+|+||.++=..+.++|.+.+ +.++.++.. -+..++.|++.+.
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~---~~~v~~~~~---P~~~va~Ga~~~~ 325 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKET---GLPVIVADD---PLLCVAKGTGKAL 325 (333)
T ss_pred CEEEECcccchhhHHHHHHHHH---CCCceecCC---hHHHHHHHHHHHH
Confidence 7999999999999999998876 566665542 2677888888775
No 113
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=83.03 E-value=5.8 Score=37.34 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=34.7
Q ss_pred eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394 265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR 315 (339)
Q Consensus 265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~ 315 (339)
+|+|+||.++=..+.++|.+.+ +.++.+.. ..+..++.|++.+..
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~---~~~v~~~~---~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEET---GLPVHVAE---DPLTCVARGTGKALE 323 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHH---CCCcEecC---CHHHHHHHHHHHHHh
Confidence 5999999999999999999876 45555543 237778888877753
No 114
>PRK13411 molecular chaperone DnaK; Provisional
Probab=82.48 E-value=4.3 Score=42.18 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
+.+.++++++..+ ++.|+|+||.+.-..+++.|.+.+.. ..+..+ ...|.+++.|+|.+.....+.
T Consensus 310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~--~~~~~~---~npdeaVA~GAAi~aa~l~~~ 380 (653)
T PRK13411 310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG--KQPDRS---VNPDEAVALGAAIQAGVLGGE 380 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCC--cCcCCC---CCchHHHHHHHHHHHHhhcCC
Confidence 3444555555544 56899999999999999999887521 122222 345899999999988776664
No 115
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=82.05 E-value=22 Score=29.09 Aligned_cols=67 Identities=12% Similarity=0.228 Sum_probs=41.7
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeE--EEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRS--HVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA 78 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia 78 (339)
|+|.||+..+.++-+|++..+ +.+.- .-|.+.+.+..+ + +......+...+.+++++.+ ||.|+
T Consensus 1 M~vCGVELkgneaii~ll~~~-~~~~~~pdcr~~k~~l~~~-----~---~~~~vr~Fq~~f~kl~~dy~-----Vd~Vv 66 (138)
T PF11215_consen 1 MKVCGVELKGNEAIICLLSLD-DGLFQLPDCRVRKFSLSDD-----N---STEEVRKFQFTFAKLMEDYK-----VDKVV 66 (138)
T ss_pred CeEEEEEEecCeEEEEEEecC-CCceECCccceeEEEcCCC-----c---cHHHHHHHHHHHHHHHHHcC-----CCEEE
Confidence 999999999999999999765 33432 112222222111 1 23344556667788888654 68888
Q ss_pred EeC
Q psy9394 79 YTR 81 (339)
Q Consensus 79 ~~~ 81 (339)
+-.
T Consensus 67 Ik~ 69 (138)
T PF11215_consen 67 IKE 69 (138)
T ss_pred EEe
Confidence 743
No 116
>PLN03184 chloroplast Hsp70; Provisional
Probab=81.67 E-value=6.6 Score=41.00 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=40.6
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
++.|+|+||.+.-..+++.|.+.+ +..+... ...|.+++.|+|.+.....+.
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~f---g~~~~~~---~npdeaVA~GAAi~aa~ls~~ 417 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLT---GKDPNVT---VNPDEVVALGAAVQAGVLAGE 417 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHh---CCCcccc---cCcchHHHHHHHHHHHHhccC
Confidence 579999999999999999998876 3332222 345889999999988777664
No 117
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=81.64 E-value=8.1 Score=36.31 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=34.8
Q ss_pred eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394 265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR 315 (339)
Q Consensus 265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~ 315 (339)
.|+|+||.++=..+.++|.+.+ +.++.++. ..+.+++.|++.+..
T Consensus 283 ~IvL~GG~s~ipg~~~~l~~~~---~~~v~~~~---~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLSEET---GLPVHIAE---DPLTCVARGTGKALE 327 (335)
T ss_pred CEEEECchhcchhHHHHHHHHH---CCCceecC---CHHHHHHHHHHHHHh
Confidence 3999999999999999999876 45555543 346788888887764
No 118
>PRK07157 acetate kinase; Provisional
Probab=81.35 E-value=4.1 Score=39.50 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHH-HHHHHHHHHHhCC
Q psy9394 243 LDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQ-LRKKLNILKKQYN 290 (339)
Q Consensus 243 q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~-l~~~l~~~l~~~~ 290 (339)
.+.+...+.+-+..+.... +++.|+|+||++-|.. +++++.+.++--|
T Consensus 299 ~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~~lG 349 (400)
T PRK07157 299 LDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKINIPN 349 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhccccc
Confidence 3334444444444333333 3899999999999999 9999998875333
No 119
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=80.95 E-value=11 Score=35.74 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=33.1
Q ss_pred eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
.|+|+||.++=..+.+++.+.+ +..+.+.. .-|..++.|++.+.
T Consensus 281 gIvLtGG~s~lpgl~e~l~~~~---~~~v~~~~---~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLSEEI---VVPVHVAA---NPLESVAIGTGRSL 324 (335)
T ss_pred CEEEEchhhhhhhHHHHHHHHH---CCCceeCC---CHHHHHHHHHHHHH
Confidence 6999999999999999998876 55555542 23567888877764
No 120
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=80.88 E-value=3.9 Score=38.70 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHh-CCCeEEEEcchhhhHHHHHHHHHHHHh
Q psy9394 250 LTFKCIAALKNT-GINKLVVVGGVGANKQLRKKLNILKKQ 288 (339)
Q Consensus 250 l~~~~~~~~~~~-~~~~v~laGGVa~N~~l~~~l~~~l~~ 288 (339)
+++.+..+.... ..+.|++||-++.|.-+.+.+.+.+.+
T Consensus 247 i~k~V~~l~~~~~~~~~IilSGr~~~~~~~~~~l~~~l~~ 286 (343)
T PF07318_consen 247 IVKAVASLLASVPDPDEIILSGRFSRIPEFRKKLEDRLED 286 (343)
T ss_pred HHHHHHHHhcccCCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 333333444344 456799999999999999999998864
No 121
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=80.78 E-value=4.7 Score=40.27 Aligned_cols=77 Identities=9% Similarity=0.217 Sum_probs=51.3
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+.+|+|.+|.+.=+++++-..+++++.... .++.+. -...+++-.+.+-++.+..+++.+++++|+++.+|-.|.++
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~-p~~~~~-~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvD 80 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVR-PYPMWQ-PGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVD 80 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhccc-ceeccc-cCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEc
Confidence 579999999999999998532367763210 111111 11223322345556667789999999999999989888875
No 122
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=79.39 E-value=6.8 Score=32.52 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=32.6
Q ss_pred EEEEecCCCceeEEEEECCCCc--eeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 3 ILGIESSCDDSGLALYDTHIKN--LRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~--i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
|||||-|...++.|+++.+.++ ++....+... + .....+....+...+.+++++. .+|.+++=
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~---~-------~~~~~~Rl~~I~~~l~~li~~~-----~P~~vaiE 65 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTS---S-------KDSLPERLKEIYEELEELIEEY-----NPDEVAIE 65 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE-------------S--HHHHHHHHHHHHHHHHHHH-------SEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECC---C-------CCCHHHHHHHHHHHHHHHHHhh-----CCCEEEee
Confidence 7999999999999999764122 3333222110 0 0011223344556777777754 56777763
No 123
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=78.30 E-value=7.4 Score=40.48 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY 320 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~ 320 (339)
++.|+|+||.+.-..+.+.|.+.+.. ..+.. ....|.+++.|++.+..+.++.
T Consensus 333 i~~ViLvGGssriP~v~~~i~~~f~~--~~~~~---~~npdeaVA~GAa~~aa~ls~~ 385 (653)
T PTZ00009 333 VHEVVLVGGSTRIPKVQSLIKDFFNG--KEPCK---SINPDEAVAYGAAVQAAILTGE 385 (653)
T ss_pred CcEEEEECCCCCChhHHHHHHHHhCC--CCCCC---CCCcchHHhhhhhhhHHHhcCC
Confidence 67999999999999999999887631 12211 2355889999999988776653
No 124
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=75.35 E-value=13 Score=36.40 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=46.7
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHH------------HHHHHHHHHHHHHhCC
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTH------------IQTIIPLLSKLLKNSN 68 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~------------~~~l~~~i~~~l~~~~ 68 (339)
|+-++||.+|.+..+.|++-..+++++..... --...||.|+-+-..... .+.+..+++++++++|
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~--NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~g 78 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEVLATASFL--NPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAG 78 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--EEEEEEEE---GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcchhheeeEEEECCCCCEEEeeccc--CCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56789999999999999985325788753211 012347776654322211 1223356777788889
Q ss_pred CCCCCcCEEEEeC
Q psy9394 69 LELKKIDIIAYTR 81 (339)
Q Consensus 69 i~~~did~ia~~~ 81 (339)
+++++|..+++..
T Consensus 79 i~~~~I~~i~i~G 91 (412)
T PF14574_consen 79 ISPEDIYEIVIVG 91 (412)
T ss_dssp --GGGEEEEEEEE
T ss_pred CCHHHeEEEEEEe
Confidence 9999998888764
No 125
>KOG1794|consensus
Probab=75.28 E-value=71 Score=29.74 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=46.0
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCC-cCEEEEe
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKK-IDIIAYT 80 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~d-id~ia~~ 80 (339)
.+.|+|.+...+-+++++++ ++++....--. ++| -.+| + ..-.+.+.+++++.++++|+++++ +..++.+
T Consensus 4 ~y~GvEGgaT~s~~Vivd~~-~~~~~~a~~~~-Tnh-~~ig---~---~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~ 74 (336)
T KOG1794|consen 4 FYGGVEGGATCSRLVIVDED-GTILGRAVGGG-TNH-WLIG---S---TTCASRIEDMIREAKEKAGWDKKGPLRSLGLG 74 (336)
T ss_pred eeEeecCCcceeEEEEECCC-CCEeeEeeccc-ccc-ccCC---c---hHHHHHHHHHHHHHHhhcCCCccCccceeeee
Confidence 47899998877777777766 67776432111 111 1222 1 233456778999999999999988 7777764
No 126
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=74.04 E-value=15 Score=35.74 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.0
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHV 29 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~ 29 (339)
-+++|||.++..++++|++++ ++++...
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~-g~Il~~~ 29 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDK-GEVIGRG 29 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCC-CcEEEEE
Confidence 058999999999999999987 5677654
No 127
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=73.01 E-value=4.8 Score=31.85 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHH-HHHHHHhc---CCCEEeecchhHHhhh
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSI-ACSIALSI---NKPVIGINHLEGHLLS 119 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~-ak~la~~~---~~p~~~v~h~~aHa~s 119 (339)
..+...++.+|+++|++++|||+|-.. |+|.-.+=++.... .+.+.... .+|+-.+.....|..+
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~h-g~Gt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~ 93 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAH-GTGTPLGDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTEA 93 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE-----SSHHHHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-GG
T ss_pred HHHHHHHHHHHhhhccccccceeeeee-ccccccchhhhhhhhhhhhcccccccccceeccccccccccc
Confidence 344567999999999999999999754 55532222222221 22222221 2556555555555543
No 128
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=72.86 E-value=7.4 Score=34.09 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 245 AIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
-+.+.+++++++..+.+++.++.|+||...-...-+..+++| ++++|.|..
T Consensus 209 PV~eKMAeIv~~hie~~~i~dl~lvGGac~~~g~e~~Fe~~l---~l~v~~P~~ 259 (277)
T COG4820 209 PVYEKMAEIVARHIEGQGITDLWLVGGACMQPGVEELFEKQL---ALQVHLPQH 259 (277)
T ss_pred HHHHHHHHHHHHHhccCCCcceEEecccccCccHHHHHHHHh---ccccccCCC
Confidence 344566777788888899999999999888888777777766 577887753
No 129
>PRK12440 acetate kinase; Reviewed
Probab=72.46 E-value=11 Score=36.47 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=24.0
Q ss_pred CCCeEEEEcchhhhHH-HHHHHHHHHH
Q psy9394 262 GINKLVVVGGVGANKQ-LRKKLNILKK 287 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~-l~~~l~~~l~ 287 (339)
+++.|+|+||++-|.. +++++.+.++
T Consensus 320 gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 320 SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 7899999999999999 9999998875
No 130
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=72.34 E-value=15 Score=34.82 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 235 KANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 235 ~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
..+|...++..|++.=-++...+.+ +-|+|+||.++=..|.+.|.+.+ +++|++.+.
T Consensus 250 ~~~I~~~i~~~Le~~pPel~~DI~~----~GI~LtGGga~l~Gl~~~i~~~~---~~pV~va~~ 306 (326)
T PF06723_consen 250 VDQIVEAIKEVLEKTPPELAADILE----NGIVLTGGGALLRGLDEYISEET---GVPVRVADD 306 (326)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHH----H-EEEESGGGGSBTHHHHHHHHH---SS-EEE-SS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH----CCEEEEChhhhhccHHHHHHHHH---CCCEEEcCC
Confidence 3445555555555444444444332 46999999999999999999987 789998875
No 131
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=71.59 E-value=36 Score=27.51 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=52.0
Q ss_pred EEEecCCCceeEEEEECCCCceeEEE--EeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHV--ICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
||||-+...+++|+.+.. + .++.- .+.. +........+..+.++. +++.|+++.
T Consensus 1 laiD~G~kriGvA~~d~~-~-~~a~pl~~i~~-----------------~~~~~~~~~l~~~i~~~-----~~~~iVvGl 56 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT-G-WTAQGIPTIKA-----------------QDGEPDWSRIEELLKEW-----TPDKIVVGL 56 (130)
T ss_pred CeEccCCCeEEEEEECCC-C-CEEeceEEEEe-----------------cCCcHHHHHHHHHHHHc-----CCCEEEEec
Confidence 689999999999988766 3 55421 1111 00122335566666654 467888761
Q ss_pred --C-CCCCch-hHHHHHHHHHHHHhcCCCEEeecchhH
Q psy9394 82 --G-PGLPGS-LLVGSSIACSIALSINKPVIGINHLEG 115 (339)
Q Consensus 82 --g-PG~~t~-lr~g~~~ak~la~~~~~p~~~v~h~~a 115 (339)
. .|..+. .+....|++.|....++|+..+++...
T Consensus 57 P~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~T 94 (130)
T TIGR00250 57 PLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERLS 94 (130)
T ss_pred cCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 1 232221 233445777787777889887766543
No 132
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=71.46 E-value=59 Score=27.12 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=68.3
Q ss_pred EEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 5 GIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 5 gidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
|||.+.+...+++++.. ++++.+.++.. + .......+.+...+++++.+.+.. .|+++. ||
T Consensus 1 gidig~~~i~~~l~d~~-g~ii~~~~~~~-----------~-~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~-pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD-GEIIYSESIPT-----------P-TSPEELLDALAELIERLLADYGRS-----GIGISV-PG 61 (179)
T ss_dssp EEEEESSEEEEEEEETT-SCEEEEEEEEH-----------H-SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEE-SS
T ss_pred CEEECCCEEEEEEECCC-CCEEEEEEEEC-----------C-CCHHHHHHHHHHHHHHHHhhcccc-----cEEEec-cc
Confidence 78999999999999976 68887654432 0 012334455667777777766542 555442 33
Q ss_pred CCch-----------hHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCC-CCCcEEEEEEeCC
Q psy9394 85 LPGS-----------LLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNS-LTFPFIALLVSGG 139 (339)
Q Consensus 85 ~~t~-----------lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~-~~~~~~~l~~dGg 139 (339)
.+.. -.-...+.+.|....++|++-.+.-.+.+++-+..... ....++.+.++-|
T Consensus 62 ~v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDSEKGRIISSPNPGWENIPLKEELEERFGVPVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEETTTTEEEECSSGTGTTCEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcCCCCeEEecCCCCcccCCHHHHhhcccceEEEEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 3210 01112245667777899998888888777665442211 1235566665433
No 133
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=70.15 E-value=1.1e+02 Score=29.83 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=32.7
Q ss_pred CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCC-----CC--hhHHHHHHHHHHH
Q psy9394 264 NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF-----CT--DNGAMIAFAGAMR 315 (339)
Q Consensus 264 ~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~-----~~--D~G~aiG~a~~~~ 315 (339)
..|+|+||.++=..+.+.+.+.+. ....+..|.... .. .-.+++|.+.|..
T Consensus 330 ~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 330 AGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred CEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 459999999999999999988873 223444443210 12 2456667766654
No 134
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=69.11 E-value=29 Score=30.58 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=47.7
Q ss_pred EEEEEecCCCc------eeEEEEE--CCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9394 2 IILGIESSCDD------SGLALYD--THIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKK 73 (339)
Q Consensus 2 ~iLgidts~~~------~~~al~~--~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~d 73 (339)
.|-|+|.|+.. .++++++ ++ +.+... ....++..||. |.. -.++.++ .+.+.+++.. ..
T Consensus 27 ~I~gvDiS~~~~~~~~vaa~Vv~~~~~~--~~~~~~-~~~~~~~~PYI---PG~---LafRE~p-~l~~~~~~l~---~~ 93 (208)
T cd06559 27 LVAGVDVSYKKDGDLAVAAAVVLDYPDL--EVVETA-VAVGEVTFPYI---PGL---LAFREGP-PLLEALEKLK---TK 93 (208)
T ss_pred EEEEEEeeeccCCCeEEEEEEEEECCCC--cEEEEE-EEEEecCCCCc---chh---HHHhhHH-HHHHHHHhCC---CC
Confidence 57899997652 2333445 34 455432 22334455664 332 2233333 3444555443 37
Q ss_pred cCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecc
Q psy9394 74 IDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINH 112 (339)
Q Consensus 74 id~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h 112 (339)
+|.|.+|.+ |..=--|.|+ |--+....++|.++|-=
T Consensus 94 PDlilVDG~-G~~HpR~~Gl--A~HlGv~l~~PtIGVAK 129 (208)
T cd06559 94 PDLLLVDGH-GIAHPRRFGL--ASHLGVLLDLPTIGVAK 129 (208)
T ss_pred CCEEEEeCC-ccccCCCcch--hheeeeecCCCEEEEEc
Confidence 899999842 2211112222 33344556788887753
No 135
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=66.93 E-value=20 Score=34.89 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchh-hhHHHHHHHHHHHHhCCc
Q psy9394 242 FLDAIIDVLTFKCIAALKNTG--INKLVVVGGVG-ANKQLRKKLNILKKQYNY 291 (339)
Q Consensus 242 ~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa-~N~~l~~~l~~~l~~~~~ 291 (339)
+.+.+...+.+-+..+....+ ++.|+|+||++ -...+++++.+.++--|+
T Consensus 305 A~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~~lGi 357 (404)
T TIGR00016 305 AIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALEFLGF 357 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhhhcCc
Confidence 334444444444444443333 89999999999 667788888887753333
No 136
>PRK11678 putative chaperone; Provisional
Probab=66.73 E-value=29 Score=34.43 Aligned_cols=75 Identities=9% Similarity=0.061 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA 311 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a 311 (339)
+.+++...++. +.+.+.+++++..+..+ .+.|+|+||.+.-..+.+.+.+.+. +..+...+ .+..++.|++
T Consensus 370 tR~efe~ii~~-~l~ri~~~i~~~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg--~~~v~~g~----~~~sVa~Gla 442 (450)
T PRK11678 370 SQQGLEEAISQ-PLARILELVQLALDQAQVKPDVIYLTGGSARSPLIRAALAQQLP--GIPIVGGD----DFGSVTAGLA 442 (450)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHHHCC--CCcEEeCC----CcchHHHHHH
Confidence 45555554444 34455666677776655 4699999999999999999988752 23444333 3567888888
Q ss_pred HHHH
Q psy9394 312 GAMR 315 (339)
Q Consensus 312 ~~~~ 315 (339)
.+..
T Consensus 443 ~~a~ 446 (450)
T PRK11678 443 RWAQ 446 (450)
T ss_pred HHHH
Confidence 7763
No 137
>PRK13320 pantothenate kinase; Reviewed
Probab=66.11 E-value=40 Score=30.40 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchh
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVG 273 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa 273 (339)
...+.|..++.......+..+++++.++.+.-.++++||-+
T Consensus 174 ~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~vi~TGG~a 214 (244)
T PRK13320 174 STEECIRSGVVWGCVAEIEGLIEAYKSKLPELLVILTGGDA 214 (244)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 45677777888888888888888888887755899999954
No 138
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=65.72 E-value=21 Score=34.80 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.5
Q ss_pred CCCeEEEEcchh-hhHHHHHHHHHHHHhCC
Q psy9394 262 GINKLVVVGGVG-ANKQLRKKLNILKKQYN 290 (339)
Q Consensus 262 ~~~~v~laGGVa-~N~~l~~~l~~~l~~~~ 290 (339)
+++.|+|+||++ -+..+++++.++++--|
T Consensus 323 ~vDaiVfTGGIgE~s~~lr~~I~~~l~~lG 352 (402)
T PRK00180 323 RLDAIVFTAGIGENSALVREKVLEGLEFLG 352 (402)
T ss_pred CCCEEEEcCccccCCHHHHHHHHhhhhhcC
Confidence 589999999999 88889999988875444
No 139
>PRK11617 endonuclease V; Provisional
Probab=64.91 E-value=16 Score=32.54 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=46.8
Q ss_pred EEEEEecCCCc------eeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcC
Q psy9394 2 IILGIESSCDD------SGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKID 75 (339)
Q Consensus 2 ~iLgidts~~~------~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did 75 (339)
.|.|+|.|..+ .++++++-...+++.... ...+..-||+ |.. =.++.++. +-+++++... ++|
T Consensus 31 ~VaGvDvsy~~~~~~~~aa~Vvl~~~~~~~v~~~~-~~~~~~~PYI---PG~---LaFRE~P~-~l~al~~l~~---~Pd 99 (224)
T PRK11617 31 LIAGADVGFEQGGEVTRAAIVVLKYPSLELVEYQV-ARIATTMPYI---PGF---LSFREYPA-LLAAWEQLSQ---KPD 99 (224)
T ss_pred EEEEEEEEEcCCCceEEEEEEEEECCCCcEEEEEE-EEeccCCCcC---cch---HHHhhHHH-HHHHHHhcCc---CCC
Confidence 57899998743 334445533135654432 2234455674 332 22344443 3345555443 788
Q ss_pred EEEEeC----CCCCCchhHHHHHHHHHHHHhcCCCEEeec
Q psy9394 76 IIAYTR----GPGLPGSLLVGSSIACSIALSINKPVIGIN 111 (339)
Q Consensus 76 ~ia~~~----gPG~~t~lr~g~~~ak~la~~~~~p~~~v~ 111 (339)
.|.||. ||..+ |+ |--+....++|.++|-
T Consensus 100 lllvDG~G~~HPR~~-----Gl--A~HlGv~~~~PtIGVA 132 (224)
T PRK11617 100 LVFVDGHGIAHPRRL-----GV--ASHFGLLVDVPTIGVA 132 (224)
T ss_pred EEEEcCceeECCCCc-----ce--eeEEEeecCCCEEEEE
Confidence 898874 35432 11 2222234567777764
No 140
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=64.70 E-value=33 Score=28.75 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=35.1
Q ss_pred EEEEecCCCceeEEEEECCCCce--eEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNL--RSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i--~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
|||||-++..+..++++...+++ +....++. .+ .+ -.++...+...+++++++. ++|.+++
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~~~~v~~G~I~t---~~-----~~---~~~RL~~I~~~l~~~i~~y-----~P~~~ai 63 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT---KV-----DD---LPSRLKLIYAGVTEIITQF-----QPNYFAI 63 (156)
T ss_pred CEeECcccccccEEEEEecCCeEEEEEeeEEEC---CC-----CC---HHHHHHHHHHHHHHHHHHh-----CCCEEEE
Confidence 69999999999999998431232 22322211 00 01 1233444556777777653 5666765
No 141
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=63.83 E-value=14 Score=35.78 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=21.7
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEE
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSH 28 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~ 28 (339)
+||.|+.++.+++++|++.+..+++++
T Consensus 1 KILVIN~GSSS~Kfalf~~~~~~~l~~ 27 (388)
T PF00871_consen 1 KILVINPGSSSTKFALFDMDSGEVLAS 27 (388)
T ss_dssp EEEEEEEESSEEEEEEEETTTTEEEEE
T ss_pred CEEEEcCChHhheeeeEECCCCCeeee
Confidence 699999999999999999862245553
No 142
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=62.30 E-value=55 Score=32.96 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=42.4
Q ss_pred CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q psy9394 262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSE 323 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~~ 323 (339)
.+++|..+||-..|..+.+.+.+. .|..+.++. .|+..++|.+.......|.+.+
T Consensus 431 ~Id~l~~sGG~~KN~llmql~aDv---tg~~v~i~~----s~~a~llGsAm~~avAag~~~d 485 (544)
T COG1069 431 AIDTLFASGGIRKNPLLMQLYADV---TGRPVVIPA----SDQAVLLGAAMFAAVAAGVHPD 485 (544)
T ss_pred eeeEEEecCCcccCHHHHHHHHHh---cCCeEEeec----ccchhhhHHHHHHHHHhccCcc
Confidence 468999999999999999987765 377787774 5666777877766666666655
No 143
>KOG2531|consensus
Probab=61.40 E-value=29 Score=34.22 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=34.8
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHH
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAG 312 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~ 312 (339)
..+|.++||-..|..+.+.|.+.+ +-+||... +++..++|.|.
T Consensus 443 ~~rilvtGGAS~N~~Ilq~iadVf---~apVy~~~----~~~sa~lG~A~ 485 (545)
T KOG2531|consen 443 PTRILVTGGASRNEAILQIIADVF---GAPVYTIE----GPNSAALGGAY 485 (545)
T ss_pred CceEEEecCccccHHHHHHHHHHh---CCCeEeec----CCchhhHHHHH
Confidence 458999999999999999999876 66777764 66677778654
No 144
>PRK00292 glk glucokinase; Provisional
Probab=59.51 E-value=22 Score=33.22 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=59.5
Q ss_pred CE-EEEEecCCCceeEEEEE-CCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHh-CCCCCCCcCEE
Q psy9394 1 MI-ILGIESSCDDSGLALYD-THIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKN-SNLELKKIDII 77 (339)
Q Consensus 1 M~-iLgidts~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~-~~i~~~did~i 77 (339)
|. +||||.+...+.+++++ ++ +.++...++.. +..+.+...+++++++ .+. ++..|
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~~-~~~~~~~~~~~-----------------~~~~~~~~~l~~~l~~~~~~---~~~gi 59 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWAN-GEIEQIKTYAT-----------------ADYPSLEDAIRAYLADEHGV---QVRSA 59 (316)
T ss_pred CceEEEEEcCccceEEEEEecCC-CceeeeEEEec-----------------CCCCCHHHHHHHHHHhccCC---CCceE
Confidence 54 89999999999999998 45 44554433211 0012355566677764 332 56777
Q ss_pred EEeCCCCCCc-------h--hHHHHHHHHHHHHhcCCC-EEeecchhHHhhhcc
Q psy9394 78 AYTRGPGLPG-------S--LLVGSSIACSIALSINKP-VIGINHLEGHLLSPF 121 (339)
Q Consensus 78 a~~~gPG~~t-------~--lr~g~~~ak~la~~~~~p-~~~v~h~~aHa~s~~ 121 (339)
+++. ||... . .+. ..+.|....++| ++-.+-..|.+++-.
T Consensus 60 gIg~-pG~vd~~~i~~~n~~w~~---~~~~l~~~~~~p~v~l~ND~~aaalgE~ 109 (316)
T PRK00292 60 CFAI-AGPVDGDEVRMTNHHWAF---SIAAMKQELGLDHLLLINDFTAQALAIP 109 (316)
T ss_pred EEEE-eCcccCCEEEecCCCccc---CHHHHHHHhCCCeEEEEecHHHHHcccc
Confidence 7653 55331 1 111 135566777896 988898888888754
No 145
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=58.95 E-value=22 Score=28.35 Aligned_cols=55 Identities=16% Similarity=0.074 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhH
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEG 115 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~a 115 (339)
+.+...++.+|++.++++.+|+.|+.-..-..-.+ ...++..+++|++.++-=+.
T Consensus 15 ~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~-------l~~~A~~l~~~~~~~~~eeL 69 (121)
T PF01890_consen 15 EEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPG-------LLELAEELGIPLRFFSAEEL 69 (121)
T ss_dssp HHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HH-------HHHHHHHCTSEEEEE-HHHH
T ss_pred HHHHHHHHHHHHHcCCChhhccEEEeccccCCCHH-------HHHHHHHhCCCeEEECHHHH
Confidence 55778999999999999999999986422111112 35678889999887754333
No 146
>PRK08304 stage V sporulation protein AD; Validated
Probab=58.76 E-value=25 Score=33.28 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 55 TIIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 55 ~l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
-..++++++|+++|++++|||.+.+..-++
T Consensus 59 La~eAa~~ALekAGI~~~DID~lI~Gdll~ 88 (337)
T PRK08304 59 MMEDAIQQALQKANLKKSDIDYLLAGDLLN 88 (337)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 345799999999999999999998765443
No 147
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=58.41 E-value=1e+02 Score=25.38 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.8
Q ss_pred CEEEEEecCCCceeEEEEECC
Q psy9394 1 MIILGIESSCDDSGLALYDTH 21 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~ 21 (339)
|+|++||.+....+.|+++..
T Consensus 1 mii~sIDiGikNlA~~iie~~ 21 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFE 21 (143)
T ss_pred CeEEEEecCCCceeEEEEEcC
Confidence 899999999999999999964
No 148
>KOG0681|consensus
Probab=58.07 E-value=19 Score=36.08 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHhC-----CcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQY-----NYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~~-----~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
+.+|.|+|||++=..|.++|.+.+..- .++|+.... |..| .=-|+..|+
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasd-P~LD--AW~GA~~~a 612 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASD-PVLD--AWRGASAWA 612 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCC-cchh--hhhhhHHhh
Confidence 679999999999999999998877541 345555533 5667 233444444
No 149
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=57.56 E-value=13 Score=33.90 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=38.7
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHh----cCCCEEeecch
Q psy9394 39 EYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALS----INKPVIGINHL 113 (339)
Q Consensus 39 ~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~----~~~p~~~v~h~ 113 (339)
++.|.+.+... .+-...+++.+|+++++++++||.|+++.-.+...+..+ ++..+.. ..+|.+.|+..
T Consensus 16 ~~~G~l~~~~~---~~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~----ar~~~l~aGl~~~vp~~~V~~~ 87 (264)
T PF00108_consen 16 KFGGSLADVSP---EDLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNI----ARQAALAAGLPESVPATTVNRA 87 (264)
T ss_dssp CTTSTTTTS-H---HHHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHH----HHHHHHHTTS-TTSEEEEEE-G
T ss_pred cCCCccCCCCH---HHHHHHHHHHHHHhcccchhhhhhcCcccccccccchhh----hhhhhhhcccccccceeeehhh
Confidence 45565554222 233447899999999999999999988654322223222 3333332 24566666654
No 150
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=57.01 E-value=41 Score=29.60 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=44.8
Q ss_pred EEEEEecCC---Cce---eEEEEECCCCceeEEEEeeecccccccC-CccchHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy9394 2 IILGIESSC---DDS---GLALYDTHIKNLRSHVICSQNLVHKEYG-GVVPELAARTHIQTIIPLLSKLLKNSNLELKKI 74 (339)
Q Consensus 2 ~iLgidts~---~~~---~~al~~~~~~~i~~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~di 74 (339)
.|.|+|.+. .+. ++++++-...+++.... ...+..-||+ |.+- ++.++ .+-+++++... ++
T Consensus 23 ~V~gvDvsy~~~~~~~~a~~Vv~~~~~~~~v~~~~-~~~~~~~PYiPG~La-------fRE~P-~~l~~l~~l~~---~~ 90 (206)
T PF04493_consen 23 LVAGVDVSYSDRGDRAVAAAVVLDYPSLKVVEESY-VIVPVSFPYIPGFLA-------FRELP-CILEALEKLKN---KP 90 (206)
T ss_dssp EEEEEEEEEECCCCEEEEEEEEEETTTTEEEEEEE-EEEE--S-SSTT-GG-------GGTHH-HHHHHHHTSSS-----
T ss_pred EEEEEEEEEEcCCCeEEEEEEEEECCCCCeEEEEE-EEeccCcCccCCcee-------hhhHH-HHHHHHHHhcc---cC
Confidence 578999877 222 22334432134554432 2334445675 3221 23344 34445565443 67
Q ss_pred CEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecc
Q psy9394 75 DIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINH 112 (339)
Q Consensus 75 d~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h 112 (339)
|.|.||. -|..=.-|.|+ |--++...++|.++|-=
T Consensus 91 dvilvDG-~G~~HpR~~Gl--A~HlGv~l~iPtIGVAK 125 (206)
T PF04493_consen 91 DVILVDG-HGILHPRRFGL--ASHLGVLLDIPTIGVAK 125 (206)
T ss_dssp SCEEEES--SSSSTTS--H--HHHHHHHHTS-EEEEES
T ss_pred CEEEEeC-ceeecCCCcCh--hheeeeccCCCEEEEeC
Confidence 8899984 23322223343 44556677899998853
No 151
>PRK07058 acetate kinase; Provisional
Probab=56.11 E-value=37 Score=32.98 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=23.5
Q ss_pred CCCeEEEEcchh-hhHHHHHHHHHHHHhCC
Q psy9394 262 GINKLVVVGGVG-ANKQLRKKLNILKKQYN 290 (339)
Q Consensus 262 ~~~~v~laGGVa-~N~~l~~~l~~~l~~~~ 290 (339)
+++.|+|+||++ -+..+++++.+.++--|
T Consensus 318 ~vDaiVfTGGIgEns~~vr~~i~~~l~~lg 347 (396)
T PRK07058 318 GLDAVVFTAGIGEHQPAIRAAVCERLAWLG 347 (396)
T ss_pred CCCEEEECCccccCcHHHHHHHHhhhhhhc
Confidence 689999999999 55668999988876333
No 152
>PLN02192 3-ketoacyl-CoA synthase
Probab=55.34 E-value=35 Score=34.34 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=28.2
Q ss_pred HHHHHH-HHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 50 RTHIQT-IIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 50 ~~~~~~-l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
++..+. +..+++++|+++|++++|||.|+++..|.+
T Consensus 173 ~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~ 209 (511)
T PLN02192 173 RKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFN 209 (511)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCC
Confidence 344444 447999999999999999999988766654
No 153
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=53.47 E-value=2.3e+02 Score=28.22 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCcC--EEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKID--IIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did--~ia~~ 80 (339)
+.+...+++-+++||+.|+||| +|.+|
T Consensus 63 ~al~~iv~~eY~~Agi~p~~I~TGAVIIT 91 (473)
T PF06277_consen 63 EALKEIVEEEYRKAGITPEDIDTGAVIIT 91 (473)
T ss_pred HHHHHHHHHHHHHcCCCHHHCccccEEEe
Confidence 4566788899999999999997 56666
No 154
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=52.95 E-value=36 Score=27.33 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC----CCCCCchhHHHHHHHHHHHHhcCCCEEeecch
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR----GPGLPGSLLVGSSIACSIALSINKPVIGINHL 113 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~----gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~ 113 (339)
+.+...+++.|++.|+.+..|+.|+... .|| ...++..+++|+..++--
T Consensus 17 e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~-----------L~~~A~~lg~pl~~~~~~ 69 (126)
T PRK07027 17 EQIEAAIRAALAQRPLASADVRVVATLDLKADEAG-----------LLALCARHGWPLRAFSAA 69 (126)
T ss_pred HHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHH-----------HHHHHHHhCCCeEEeCHH
Confidence 4567889999999999999999998632 133 246677889998877543
No 155
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=52.46 E-value=40 Score=32.24 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCC----Ce-EEEEcchhhhHHHHHHHHHHHH
Q psy9394 236 ANIARGFLDAIIDVLTFKCI-AALKNTGI----NK-LVVVGGVGANKQLRKKLNILKK 287 (339)
Q Consensus 236 ~diAa~~q~~l~~~l~~~~~-~~~~~~~~----~~-v~laGGVa~N~~l~~~l~~~l~ 287 (339)
.++...++..+. .+++.++ +..++.+. +. |+|+||.++=..+.+.+.+.+.
T Consensus 283 ~~l~~ii~~~~~-ei~~~i~~~~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 283 KELAEIIEARAE-EILEIVKQKELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhC
Confidence 444433333333 3333343 44444443 44 9999999999999999998873
No 156
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=52.03 E-value=69 Score=30.22 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEcc
Q psy9394 236 ANIARGFLDAIIDVLTFKCIAALKNT---GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296 (339)
Q Consensus 236 ~diAa~~q~~l~~~l~~~~~~~~~~~---~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~ 296 (339)
.+....+-..+.+-|...+..+..+. .++.|+|+||.+.=..|.+.|.+.+ ++++.+-
T Consensus 245 ~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l---~~~v~~~ 305 (340)
T PF11104_consen 245 QDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL---GIPVEVI 305 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH---TSEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH---CCceEEc
Confidence 34444555555556666556554443 3689999999999999999999987 6765433
No 157
>PRK12408 glucokinase; Provisional
Probab=51.67 E-value=93 Score=29.38 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=57.7
Q ss_pred EEEEEecCCCceeEEEEECCCCce------eEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNL------RSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKID 75 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i------~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did 75 (339)
.+|++|.+...+.++|++++ +++ +....+.. +..+.+...++.++++ . .+++
T Consensus 17 ~~L~~DIGGT~i~~al~d~~-g~~~~~~~~~~~~~~~t-----------------~~~~~~~~~i~~~~~~-~---~~~~ 74 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCAS-PDAAKPVELLDYRTYRC-----------------ADYPSLAAILADFLAE-C---APVR 74 (336)
T ss_pred cEEEEEcChhhhheeEEecc-CCccccccccceeEecC-----------------CCccCHHHHHHHHHhc-C---CCcC
Confidence 37999999999999999865 342 22221110 0123344556666665 2 2577
Q ss_pred EEEEeCCCCC-C-ch-hH---HH-HHHHHHHHHhcCCC-EEeecchhHHhhhccc
Q psy9394 76 IIAYTRGPGL-P-GS-LL---VG-SSIACSIALSINKP-VIGINHLEGHLLSPFL 122 (339)
Q Consensus 76 ~ia~~~gPG~-~-t~-lr---~g-~~~ak~la~~~~~p-~~~v~h~~aHa~s~~~ 122 (339)
.|+++. ||. . ++ ++ +. ....+.|....++| ++-.+-..|.+++-..
T Consensus 75 ~igIg~-pG~~~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~gE~~ 128 (336)
T PRK12408 75 RGVIAS-AGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYAAPY 128 (336)
T ss_pred EEEEEe-cCCceECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHccccc
Confidence 777652 342 1 11 00 00 01346677778985 9999999998887543
No 158
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=51.22 E-value=31 Score=31.99 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
+..+++++|+++|++|+|||.++++..
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs 113 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCS 113 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECc
Confidence 447999999999999999999988754
No 159
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=50.00 E-value=30 Score=33.59 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHH-HHHHHHH
Q psy9394 243 LDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLR-KKLNILK 286 (339)
Q Consensus 243 q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~-~~l~~~l 286 (339)
.+.+...+.+-+..+.... +++.|+|+||++-|..+. +.+.+.+
T Consensus 299 ~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 299 LDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhc
Confidence 3344444444444444343 689999999999997654 5555444
No 160
>PLN02854 3-ketoacyl-CoA synthase
Probab=49.55 E-value=44 Score=33.76 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
+..+++++|+++|++++|||.|+++..|-
T Consensus 192 ~~~~~~~lL~kaGi~p~dID~LIv~cS~~ 220 (521)
T PLN02854 192 MFGALDSLFSKTGVKPRDIGILIVNCSLF 220 (521)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 34789999999999999999999865544
No 161
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=48.62 E-value=45 Score=31.47 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRGP 83 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~gP 83 (339)
..++++.+|+++|++++|||.|.+..-|
T Consensus 54 a~eAa~~ALekAGL~~~DID~IIvGdl~ 81 (327)
T TIGR02845 54 MEDAVNLALKKANLKKDDVDFFLAGDLL 81 (327)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEeCCC
Confidence 4578999999999999999999875434
No 162
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=47.40 E-value=42 Score=31.49 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccC-CCCCChhHH
Q psy9394 236 ANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK-KEFCTDNGA 306 (339)
Q Consensus 236 ~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~-~~~~~D~G~ 306 (339)
.++...+...+.+...++.+.+.+....++|+|+||-|. .+...|++......-+++++. ++++|-.|.
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~ 315 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELGDFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGF 315 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHH
Confidence 444444444444444444444433335689999999774 245555555421112466654 455554443
No 163
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=46.76 E-value=44 Score=32.98 Aligned_cols=73 Identities=12% Similarity=0.001 Sum_probs=37.5
Q ss_pred EEEecCCCceeEEEEECCCC--ceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 4 LGIESSCDDSGLALYDTHIK--NLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~--~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
|+||.++..++++|++.+.+ ++...+.........+..|... ...+.+...+.++++++.....+|..|+++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~l~~~~~~~~~i~~Igis~ 75 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHEC-----WDIDALEQEIRLGLNKVDAEGIAPDSIGIDT 75 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEE-----EehHHHHHHHHHHHHHHhccCCCceEEEEec
Confidence 68999999999999986311 4442222221111111112111 1122334455555555433334688898864
No 164
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=46.74 E-value=2.2e+02 Score=25.59 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcchh
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG-INKLVVVGGVG 273 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~-~~~v~laGGVa 273 (339)
...+.|.+++.......+..++.++.++.+ ...++++||-+
T Consensus 176 ~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a 217 (243)
T TIGR00671 176 STREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDG 217 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCch
Confidence 356677777788888888888888887776 34899999944
No 165
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=46.13 E-value=57 Score=31.50 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.1
Q ss_pred CEEEEEecCCCceeEEEEECC
Q psy9394 1 MIILGIESSCDDSGLALYDTH 21 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~ 21 (339)
|++|.|++++.+.+.+|++-.
T Consensus 1 ~~iLviN~GSSSlKf~l~~~~ 21 (396)
T COG0282 1 MKILVINAGSSSLKFQLFDMP 21 (396)
T ss_pred CeEEEEecCcchheeeEeccC
Confidence 799999999999999999754
No 166
>PRK12408 glucokinase; Provisional
Probab=45.96 E-value=58 Score=30.80 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCe-EEEEcchhhh--HHHHHH--HHHHH
Q psy9394 242 FLDAIIDVLTFKCIAALKNTGINK-LVVVGGVGAN--KQLRKK--LNILK 286 (339)
Q Consensus 242 ~q~~l~~~l~~~~~~~~~~~~~~~-v~laGGVa~N--~~l~~~--l~~~l 286 (339)
+-+...+.+...+..+..-...+. |++.||++.+ ..+.+. +.+.+
T Consensus 251 ~~~~~~~~La~~i~nl~~~ldPe~GIvIGGGIs~~~~~~l~~~~f~~~~~ 300 (336)
T PRK12408 251 ALQVFCGFLGSVVGDMALAYGARGGVYLAGGILPQIADFLARSDFVERFL 300 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCceEEEECchhHhHHhhhcCHHHHHHHh
Confidence 344444444444555554556777 9999999865 444443 54443
No 167
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=45.76 E-value=43 Score=31.85 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
+-...+.+++|+++|++++|||.+++....++
T Consensus 87 ~la~~Aa~~aL~~a~~~~~~Id~li~~s~~~~ 118 (361)
T cd00831 87 ELAEEAARGALDEAGLRPSDIDHLVVNTSTGN 118 (361)
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEEECCCCC
Confidence 33457899999999999999999987555443
No 168
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=45.38 E-value=27 Score=32.64 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+..+.+++.+|+++|++++|||.+++.
T Consensus 226 ~~~~~~i~~~L~~~g~~~~did~~~~h 252 (326)
T CHL00203 226 FQVPAVIIKCLNALNISIDEVDWFILH 252 (326)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 456788999999999999999999863
No 169
>PRK12397 propionate kinase; Reviewed
Probab=45.26 E-value=78 Score=30.87 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCCeEEEEcchhhhHH-HHHHHHHHHHhCCc
Q psy9394 262 GINKLVVVGGVGANKQ-LRKKLNILKKQYNY 291 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~-l~~~l~~~l~~~~~ 291 (339)
+++.|+|+||++-|.. +++++.+.|+--|+
T Consensus 321 gvDaiVFTGGIGEns~~vR~~ic~~L~~lGi 351 (404)
T PRK12397 321 GLDALVFTGGIGENSARARSAVCHNLQFLGL 351 (404)
T ss_pred CCCEEEECCchhhCCHHHHHHHHhhhhhcCc
Confidence 6899999999998875 56666666654443
No 170
>PLN02621 nicotinamidase
Probab=43.96 E-value=1e+02 Score=26.51 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
++.|+++|+++|-+.-.|.+...+.. .+.|++++++..
T Consensus 123 ~~~gi~~lvi~Gv~T~~CV~~Ta~~a--~~~gy~v~v~~D 160 (197)
T PLN02621 123 RKIGVKEVIVTGVMTNLCCETTAREA--FVRGFRVFFSTD 160 (197)
T ss_pred HHCCCCEEEEEecccchhHHHHHHHH--HHCCCEEEEecc
Confidence 35689999999999999988876433 457999888864
No 171
>PRK13326 pantothenate kinase; Reviewed
Probab=43.80 E-value=2.6e+02 Score=25.54 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG-INKLVVVGG 271 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~-~~~v~laGG 271 (339)
...+.|.+++.......+-.+++++.++.+ .-.|+++||
T Consensus 186 nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~~~vv~TGG 225 (262)
T PRK13326 186 STSDSVNSGVIYQYKYLIEGVYHDLKRNYDREFNLIITGG 225 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 345666677777777777777888887776 348999999
No 172
>PLN02377 3-ketoacyl-CoA synthase
Probab=43.15 E-value=58 Score=32.76 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
...+++++|+++|++++|||.|+++..|-
T Consensus 176 ~~~A~~~aL~kaGi~p~dID~LVv~cS~~ 204 (502)
T PLN02377 176 MFGALDNLFANTNVNPKDIGILVVNCSLF 204 (502)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 34789999999999999999998865543
No 173
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=42.99 E-value=89 Score=27.57 Aligned_cols=101 Identities=18% Similarity=0.272 Sum_probs=49.6
Q ss_pred EEEEEecCCC-----ceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCE
Q psy9394 2 IILGIESSCD-----DSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDI 76 (339)
Q Consensus 2 ~iLgidts~~-----~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ 76 (339)
.+.|+|.+.. .+++++++-.+.+++..... ..++.-||+ |.. =.++.++.+++ +++.... ++|.
T Consensus 30 ~vagvDvsy~~~~~~~aa~Vv~~~~~~~vie~~v~-~~~~~~PYI---PGf---LaFRE~p~~l~-a~~~l~~---~~d~ 98 (212)
T COG1515 30 TVAGVDVSYEDGERGRAAAVVLDYPDLEVIETAVV-RGPVSFPYI---PGF---LAFRELPLLLK-ALEKLSV---KPDL 98 (212)
T ss_pred eEEEEEEEecCCCeEEEEEEEEEcCCCceEEEEEE-ecccccCcc---cch---hhhhhhHHHHH-HHHhcCC---CCCE
Confidence 4788888765 33334444211356643221 223344664 332 23344544443 3343332 7899
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHH
Q psy9394 77 IAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGH 116 (339)
Q Consensus 77 ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aH 116 (339)
|.|+.+ |..---|.|+ |.-++...++|.++|--+..+
T Consensus 99 ilVDG~-GiaHPR~~Gl--AsH~Gv~l~~PtIGVAK~~L~ 135 (212)
T COG1515 99 LLVDGH-GIAHPRRLGL--ASHIGVLLDVPTIGVAKSRLC 135 (212)
T ss_pred EEEcCc-ceecCcccCh--hheeeeeeCCCceeEehhhhc
Confidence 999853 3321122222 333344567888887655544
No 174
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=42.95 E-value=69 Score=30.45 Aligned_cols=18 Identities=0% Similarity=-0.021 Sum_probs=15.7
Q ss_pred CEEEEEecCCCceeEEEE
Q psy9394 1 MIILGIESSCDDSGLALY 18 (339)
Q Consensus 1 M~iLgidts~~~~~~al~ 18 (339)
|.++|||.+...++.+.-
T Consensus 2 ~~v~~iDiG~g~tK~~~~ 19 (344)
T PRK13917 2 VYVMALDFGNGFVKGKIN 19 (344)
T ss_pred ceEEEEeccCCeEEEEec
Confidence 889999999999988764
No 175
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=42.90 E-value=33 Score=35.57 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=60.6
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
++||+|.+...+.++|++++ ++++...++.. +..+.+...++.++++.+. .+++.|+++.
T Consensus 19 ~~L~iDIGGT~ir~al~~~~-g~i~~~~~~~t-----------------~~~~~~~~~i~~~l~~~~~--~~~~~igig~ 78 (638)
T PRK14101 19 PRLLADVGGTNARFALETGP-GEITQIRVYPG-----------------ADYPTLTDAIRKYLKDVKI--GRVNHAAIAI 78 (638)
T ss_pred CEEEEEcCchhheeeeecCC-CcccceeEEec-----------------CCCCCHHHHHHHHHHhcCC--CCcceEEEEE
Confidence 37999999999999999765 56765443211 0124466778888876653 3577777652
Q ss_pred CCCCCch---------hHHHHHHHHHHHHhcCCC-EEeecchhHHhhh
Q psy9394 82 GPGLPGS---------LLVGSSIACSIALSINKP-VIGINHLEGHLLS 119 (339)
Q Consensus 82 gPG~~t~---------lr~g~~~ak~la~~~~~p-~~~v~h~~aHa~s 119 (339)
||...+ .+ .. .+.+...+++| +.-.+-..|.+++
T Consensus 79 -pGpVd~~~~~~~nl~w~--~~-~~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 79 -ANPVDGDQVRMTNHDWS--FS-IEATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred -ecCccCCeeeecCCCcE--ec-HHHHHHHcCCCeEEEEchHHHHHcC
Confidence 443311 11 12 25566778886 6678888888887
No 176
>PLN02932 3-ketoacyl-CoA synthase
Probab=41.90 E-value=69 Score=32.02 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
...+++++|+++|++++|||.|++...
T Consensus 152 a~~Aa~~aL~~agi~p~dId~lIv~ts 178 (478)
T PLN02932 152 IIGAVDNLFRNTGISPSDIGILVVNSS 178 (478)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEcc
Confidence 347899999999999999999876543
No 177
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=41.39 E-value=3.8e+02 Score=26.82 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred EEEecCCCceeEEEEE-----------------CCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHh
Q psy9394 4 LGIESSCDDSGLALYD-----------------THIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKN 66 (339)
Q Consensus 4 Lgidts~~~~~~al~~-----------------~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~ 66 (339)
+|||.++.++.+.+.+ .+ +++++.......++-++- .=..+.+...++.-+++
T Consensus 9 VGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~d-kev~yrS~i~fTPl~~~~---------~ID~~~i~~~V~~ey~~ 78 (475)
T PRK10719 9 VGIDIGTTTTQVIFSRLELENRASVFQVPRIEIID-KEIIYRSPIYFTPLLKQG---------EIDEAAIKELIEEEYQK 78 (475)
T ss_pred EEEeccCceEEEEEEEEEEecccccccCceEEEee-eEEEEecCceecCCCCCc---------cccHHHHHHHHHHHHHH
Q ss_pred CCCCCCCc--CEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecc------hhHHhhhccccCCCCCCcEEEEEEeC
Q psy9394 67 SNLELKKI--DIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINH------LEGHLLSPFLSNNSLTFPFIALLVSG 138 (339)
Q Consensus 67 ~~i~~~di--d~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h------~~aHa~s~~~~s~~~~~~~~~l~~dG 138 (339)
||++++|| ++..++ |.-+.++--....+.++...+--++.--+ +...+.+....+.-.+..++.+.+.|
T Consensus 79 Agi~~~die~~ahIIT---g~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGg 155 (475)
T PRK10719 79 AGIAPESIDSGAVIIT---GETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGG 155 (475)
T ss_pred cCCCHHHccccEEEEE---echhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCC
Q ss_pred CeeEEEEecCC
Q psy9394 139 GHTQLIKVNSI 149 (339)
Q Consensus 139 g~~~~~~~~~~ 149 (339)
|.+.+....+.
T Consensus 156 GTT~iaVf~~G 166 (475)
T PRK10719 156 GTANYALFDAG 166 (475)
T ss_pred CceEEEEEECC
No 178
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=41.35 E-value=37 Score=32.96 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCC-CCCCchhHHHHHHHHHHHHhcC----CCEEeecc
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRG-PGLPGSLLVGSSIACSIALSIN----KPVIGINH 112 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~g-PG~~t~lr~g~~~ak~la~~~~----~p~~~v~h 112 (339)
+-...+++.+|+++|++++|||.|++..- |+...+-. .++.++...+ +|.+.|+.
T Consensus 29 dL~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~----~a~~i~~~lGl~~~~p~~~V~~ 88 (392)
T PRK07108 29 TLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGAN----IARQIALRAGLPVTVPGMTVNR 88 (392)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCcEEEEEeecccccccH----HHHHHHHHcCCCCCCceeeecc
Confidence 33457899999999999999999887532 34332211 2444444444 66666644
No 179
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=41.23 E-value=40 Score=32.79 Aligned_cols=29 Identities=14% Similarity=0.425 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
+-...+++.+|+++|++++|||.|++..-
T Consensus 28 eLa~~A~~~AL~~agl~~~dID~vv~g~~ 56 (404)
T PRK06205 28 ELAATVIRALVERTGIDPARIDDVIFGQG 56 (404)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 43457899999999999999999987543
No 180
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=41.11 E-value=88 Score=27.96 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEeCCCCCCc-hhHHHHHHHHHHHHhcCCCEEeecchhHHhhh
Q psy9394 58 PLLSKLLKNSNLELKKIDIIAYTRGPGLPG-SLLVGSSIACSIALSINKPVIGINHLEGHLLS 119 (339)
Q Consensus 58 ~~i~~~l~~~~i~~~did~ia~~~gPG~~t-~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s 119 (339)
++.+++|+++|++++||+.|++..--|..+ |+- ..+++.|...-.+.-+.+.++=|++..
T Consensus 106 ~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD--~~l~~~LgL~~~v~R~~i~~~GC~gg~ 166 (226)
T PF00195_consen 106 EAARKALAEAGLDPSDITHLVTVSCTGIAAPGLD--ARLINRLGLRPDVQRTPIFGMGCAGGA 166 (226)
T ss_dssp HHHHHHHHHHTS-GGGECEEEEEESSSSECS-HH--HHHHHHHT--TTSEEEEEES-GGGHHH
T ss_pred HHHHHHHHHcCCCCcccceEEEEecCCcCCCchh--HHHHhcCCCCCCcEEEEEeccchhhHH
Confidence 578889999999999999998765545443 221 123455555555556677777776654
No 181
>PTZ00107 hexokinase; Provisional
Probab=41.02 E-value=1.3e+02 Score=29.94 Aligned_cols=78 Identities=15% Similarity=0.068 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CeEEEEcchhhhH-----HHHHHHHHHHHhCCcEEEccCCCCCChhH
Q psy9394 235 KANIARGFLDAIIDVLTFKCIAALKNTGI----NKLVVVGGVGANK-----QLRKKLNILKKQYNYTVFYPKKEFCTDNG 305 (339)
Q Consensus 235 ~~diAa~~q~~l~~~l~~~~~~~~~~~~~----~~v~laGGVa~N~-----~l~~~l~~~l~~~~~~v~~~~~~~~~D~G 305 (339)
..+||..+...-++.++-.+.-+.++.+. -.|.+-|+|+... .+.+.+.+.+...+.+|.+-+ + +.|
T Consensus 373 lr~i~~~V~~RAA~L~Aa~iaail~k~~~~~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~---a-~DG 448 (464)
T PTZ00107 373 IRKICELVRGRAAQLAAAFIAAPAKKTRTVQGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYL---A-DDG 448 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEE---c-cCc
Confidence 34555555555455444444444555443 3899999999533 455555544422223343332 3 346
Q ss_pred HHHHHHHHHHH
Q psy9394 306 AMIAFAGAMRI 316 (339)
Q Consensus 306 ~aiG~a~~~~~ 316 (339)
..+|+|..+..
T Consensus 449 Sg~GAAl~AA~ 459 (464)
T PTZ00107 449 SGKGAAIIAAM 459 (464)
T ss_pred hHHHHHHHHHH
Confidence 66777766544
No 182
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=40.88 E-value=55 Score=30.66 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=14.7
Q ss_pred CcCEEEEeCCCCCC-chhHHHH
Q psy9394 73 KIDIIAYTRGPGLP-GSLLVGS 93 (339)
Q Consensus 73 did~ia~~~gPG~~-t~lr~g~ 93 (339)
+-|.+.|+.|||-. ||.+-|.
T Consensus 175 ~ADv~iV~~GPGivGTGT~~GF 196 (320)
T PF12982_consen 175 KADVAIVAMGPGIVGTGTKWGF 196 (320)
T ss_pred CCCEEEEecCCCccCCCCCCcc
Confidence 45789999999975 5555443
No 183
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=40.36 E-value=1e+02 Score=25.17 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=30.5
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
++.++++|+++|=..-.|.+...+.. .+.|+++++.+.
T Consensus 106 ~~~~i~~vil~G~~t~~CV~~T~~~a--~~~G~~v~vi~D 143 (161)
T cd00431 106 RERGIDTLVVCGIATDICVLATARDA--LDLGYRVIVVED 143 (161)
T ss_pred HHCCCCEEEEEecCcChhHHHHHHHH--HHCCCEEEEehh
Confidence 45589999999999999999887654 357999888864
No 184
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=40.35 E-value=73 Score=28.29 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=31.7
Q ss_pred HhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCC
Q psy9394 260 NTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCT 302 (339)
Q Consensus 260 ~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~ 302 (339)
+.|.+.|++.++-.. ..+++.+.+++++.|+++.+|++ +|.
T Consensus 74 e~g~kavIvp~~~~~-~g~~~~lk~~~e~~gi~~~~P~~-~Cs 114 (217)
T PF02593_consen 74 EAGVKAVIVPSESPK-PGLRRQLKKQLEEFGIEVEFPKP-FCS 114 (217)
T ss_pred HcCCCEEEEecCCCc-cchHHHHHHHHHhcCceeecCcc-ccc
Confidence 368887766655555 88999999999988999999975 444
No 185
>PRK12404 stage V sporulation protein AD; Provisional
Probab=40.01 E-value=64 Score=30.51 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
..++++.+|+++|++++|||.+.+.
T Consensus 58 ~~EA~~~AL~kAGI~~~DID~i~vG 82 (334)
T PRK12404 58 LEEACSRAIEKAKLRKEDIQFFLAG 82 (334)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 3478999999999999999999874
No 186
>PLN00415 3-ketoacyl-CoA synthase
Probab=39.52 E-value=76 Score=31.59 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRGP 83 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~gP 83 (339)
+..+++++|+++|++++|||.|+++.-|
T Consensus 138 i~~A~~~aL~~aGi~p~dID~LIvs~T~ 165 (466)
T PLN00415 138 IFGALNSLFKKTGIEPREVGIFIVNCSL 165 (466)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcC
Confidence 4468999999999999999998876544
No 187
>PRK12379 propionate/acetate kinase; Provisional
Probab=39.38 E-value=1.1e+02 Score=29.86 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCCeEEEEcchhhhHH-HHHHHHHHHHhCCc
Q psy9394 262 GINKLVVVGGVGANKQ-LRKKLNILKKQYNY 291 (339)
Q Consensus 262 ~~~~v~laGGVa~N~~-l~~~l~~~l~~~~~ 291 (339)
+++.|+|+||++-|.. +++++.+.|+--|+
T Consensus 317 ~vDaIVFTGGIGen~~~vR~~i~~~L~~lGi 347 (396)
T PRK12379 317 RLDGIIFTGGIGENSSLIRRLVMEHLAVLGL 347 (396)
T ss_pred CCCEEEECCccccCcHHHHHHHHhhhhhcCc
Confidence 7899999999998875 55666666654343
No 188
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=39.36 E-value=1.2e+02 Score=26.18 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=32.4
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCCh
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTD 303 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D 303 (339)
++.|++.|+++|-..-+|.+...+.. .+.|+++++... .|.+
T Consensus 138 r~~gi~~lii~Gv~T~~CV~~Ta~~A--~~~Gy~v~vv~D-a~as 179 (203)
T cd01013 138 KESGRDQLIITGVYAHIGCLSTAVDA--FMRDIQPFVVAD-AIAD 179 (203)
T ss_pred HHcCCCEEEEEEeccChhHHHHHHHH--HHCCCeEEEecc-ccCC
Confidence 45689999999999999999987654 357999888754 3444
No 189
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=39.02 E-value=1.4e+02 Score=24.54 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=31.7
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCCh
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTD 303 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D 303 (339)
++.|+++|+++|-..-+|........ .+.|++++++.. .|++
T Consensus 84 ~~~gi~~lii~G~~T~~CV~~Ta~~a--~~~g~~v~v~~D-a~as 125 (157)
T cd01012 84 KATGRKQVVLAGLETHVCVLQTALDL--LEEGYEVFVVAD-ACGS 125 (157)
T ss_pred HhcCCCEEEEEEeeccHHHHHHHHHH--HHCCCEEEEEee-CCCC
Confidence 35589999999999999999887654 346999888754 3443
No 190
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=38.74 E-value=86 Score=31.92 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=27.7
Q ss_pred CcCEEEEeCC--CCCCchhH-------HHHHHHHHHHHhcCCCEEeec
Q psy9394 73 KIDIIAYTRG--PGLPGSLL-------VGSSIACSIALSINKPVIGIN 111 (339)
Q Consensus 73 did~ia~~~g--PG~~t~lr-------~g~~~ak~la~~~~~p~~~v~ 111 (339)
+.+.++|.+| +|.|||-. ..+..|+.+....+.|+|+|-
T Consensus 82 ~~~t~vVvtGQQ~gLfTGPLYtiyK~is~I~LA~~l~~~l~~pvVPVF 129 (542)
T PF10079_consen 82 DPNTFVVVTGQQAGLFTGPLYTIYKAISAIKLAKELEEELGRPVVPVF 129 (542)
T ss_pred CCCCEEEEeCcccccccchHHHHHHHHHHHHHHHHHHHHhCCCeeeEE
Confidence 5677777666 99999843 233467777777788888764
No 191
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=38.53 E-value=1.3e+02 Score=27.03 Aligned_cols=37 Identities=32% Similarity=0.461 Sum_probs=33.3
Q ss_pred hCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccC
Q psy9394 261 TGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297 (339)
Q Consensus 261 ~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~ 297 (339)
.|++-+++|=|-..-..|++++++..+..+-.+|+|+
T Consensus 83 ~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pS 119 (255)
T COG1712 83 AGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPS 119 (255)
T ss_pred cCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecC
Confidence 3789999999999999999999998877777999997
No 192
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=38.14 E-value=67 Score=29.93 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
+.++..++.+|+++|++++|||.++. |++.
T Consensus 227 ~~~~~~~~~~L~~~gl~~~did~~~~--h~~~ 256 (326)
T PRK05963 227 RMMSGASQNVLASAAMTPQDIDRFFP--HQAN 256 (326)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEe--CCCC
Confidence 34567889999999999999999987 5554
No 193
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=37.98 E-value=57 Score=30.17 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=24.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHH
Q psy9394 232 KKEKANIARGFLDAIIDVLTFKCIAALKNTGIN----KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAM 307 (339)
Q Consensus 232 ~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~----~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~a 307 (339)
....+++|..+-+...+.+.+.++....+.+.+ +++..||.+ ..+...+.+++ |++..++|+ ..+...|
T Consensus 206 g~~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~g--~~~~~~la~~l---g~~~v~~p~--~~~v~~A 278 (290)
T PF01968_consen 206 GLSVEEAAEGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGAG--PLHAPELAEEL---GIPRVVPPH--YAGVANA 278 (290)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEE-------------------------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccccccc--ccccccccccc---ccccccccc--ccccccc
Confidence 446788999998888888888888885555542 455556654 33344444444 665344442 2244455
Q ss_pred HHHHHH
Q psy9394 308 IAFAGA 313 (339)
Q Consensus 308 iG~a~~ 313 (339)
+|++..
T Consensus 279 ~Ga~~a 284 (290)
T PF01968_consen 279 IGAAVA 284 (290)
T ss_dssp ------
T ss_pred cccccc
Confidence 566544
No 194
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=37.66 E-value=66 Score=29.83 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
..++..++.+|+++|++++|||.+++.
T Consensus 225 ~~~~~~i~~~L~~~g~~~~did~~~~h 251 (325)
T PRK12879 225 RTMPKGARQVLEKAGLTKDDIDWVIPH 251 (325)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 445678999999999999999999863
No 195
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=37.65 E-value=33 Score=33.28 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
...+++.+|+++|++++|||.|.+..
T Consensus 31 ~~~a~~~al~~agi~~~~Id~vv~G~ 56 (392)
T PRK06633 31 AAHLIKDILQNSKIDPALVNEVILGQ 56 (392)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEEe
Confidence 34789999999999999999998853
No 196
>PF13941 MutL: MutL protein
Probab=37.58 E-value=2.5e+02 Score=27.97 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=52.9
Q ss_pred EEEEecCCCceeEEEEE--CCCCceeEEEE-eeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCC-CCcCE-E
Q psy9394 3 ILGIESSCDDSGLALYD--THIKNLRSHVI-CSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLEL-KKIDI-I 77 (339)
Q Consensus 3 iLgidts~~~~~~al~~--~~~~~i~~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~-~did~-i 77 (339)
+|.+|.+|..+++.+++ ++..++++... .|. + + ...-...+..+++.+-+..+... .+.|. +
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT--v--------~---~~Dv~~G~~~A~~~l~~~~~~~~~~~~~~~l 68 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT--V--------E---PGDVTIGLNNALEQLEEQTPASPDDGYDKVL 68 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC--c--------C---cccHHHHHHHHHHHHHHhcCCCcccCceEEE
Confidence 78999999999999999 54134665432 111 1 0 01233456667777767665543 34444 4
Q ss_pred EEeCCCCCCchhH---------HHHHHHHHHHHhcCCCEEeecc
Q psy9394 78 AYTRGPGLPGSLL---------VGSSIACSIALSINKPVIGINH 112 (339)
Q Consensus 78 a~~~gPG~~t~lr---------~g~~~ak~la~~~~~p~~~v~h 112 (339)
+|+.--| ||| +-...||..|...+..++.+..
T Consensus 69 a~SSAaG---GLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s 109 (457)
T PF13941_consen 69 ACSSAAG---GLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYS 109 (457)
T ss_pred EECCCCC---cceEEEEecCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 4443212 344 2233567777777776654443
No 197
>KOG0101|consensus
Probab=37.50 E-value=98 Score=31.92 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 236 ANIARGFLDAIIDVLTFKCIAA-LKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 236 ~diAa~~q~~l~~~l~~~~~~~-~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
+.++.-+-+...+.+...++.+ .++..+..|+|+||++.-.++...+.+.+. + +-+.+. .--|..+++|++.-.
T Consensus 307 e~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~--~-k~~~~s--inpDeavA~GAavqa 381 (620)
T KOG0101|consen 307 EELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFN--G-KELNKS--INPDEAVAYGAAVQA 381 (620)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhc--c-cccccC--CCHHHHHHhhHHHHh
Confidence 3344434444444444333333 223457899999999999999998888764 2 222233 456889999999988
Q ss_pred HHHhcCCC
Q psy9394 315 RIENNYKS 322 (339)
Q Consensus 315 ~~~~~~~~ 322 (339)
....|...
T Consensus 382 a~~~g~~~ 389 (620)
T KOG0101|consen 382 AILSGDKS 389 (620)
T ss_pred hhccCCcc
Confidence 88887543
No 198
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=37.11 E-value=47 Score=32.23 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++.+|+++|++++|||.|.+..
T Consensus 28 eLa~~A~~~aL~~agl~~~dID~vi~g~ 55 (393)
T PRK08235 28 ELGGIAIKEALERANVSAEDVEEVIMGT 55 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 4345789999999999999999998754
No 199
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=36.79 E-value=53 Score=31.98 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHH-HHHHHHhcCCCEEeecchhHHhhh
Q psy9394 55 TIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSI-ACSIALSINKPVIGINHLEGHLLS 119 (339)
Q Consensus 55 ~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~-ak~la~~~~~p~~~v~h~~aHa~s 119 (339)
.+...++.+|+++|+ ++|||+|... +.|. +.+-.. .+.|...++.|+-.+-.+..|..+
T Consensus 281 ~~~~am~~AL~~Agl-~~~IdyI~ah-gtgT----~~~D~~E~~Ai~~~f~~pvsS~Ks~~GH~l~ 340 (398)
T PRK06519 281 DLEASLERLLKPAGG-LAAPTAVISG-ATGA----HPATAEEKAALEAALAGPVRGIGTLFGHTME 340 (398)
T ss_pred HHHHHHHHHHHHCCC-cccCCEEEeC-CCCC----CCccHHHHHHHHHHcCCCccccchhhccchH
Confidence 456799999999999 8999998643 3332 221111 233444456676666666677664
No 200
>PRK11440 putative hydrolase; Provisional
Probab=36.74 E-value=1.4e+02 Score=25.27 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=30.2
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
++.|+++|+++|=..-+|........ .+.|++++++..
T Consensus 117 ~~~gi~~lii~Gv~T~~CV~~Ta~~A--~~~gy~v~vv~D 154 (188)
T PRK11440 117 RRRGIDTIVLCGISTNIGVESTARNA--WELGFNLVIAED 154 (188)
T ss_pred HHCCCCEEEEeeechhHHHHHHHHHH--HHCCCEEEEech
Confidence 35689999999999999998886544 457999888864
No 201
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=36.57 E-value=49 Score=32.50 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
...+++.+|+++|+++++||.|++..-
T Consensus 33 ~~~a~~~al~~agl~~~~ID~vi~G~~ 59 (428)
T PRK08963 33 GKMVVGELLARSEIDPELIEQLVFGQV 59 (428)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEecc
Confidence 457899999999999999999988654
No 202
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=36.34 E-value=3.6e+02 Score=25.15 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.7
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEE
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHV 29 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~ 29 (339)
.+-||.+...+.++++.++ ++++..
T Consensus 190 ~~lvdiG~~~t~l~i~~~g--~~~~~r 214 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPG--RMLFTR 214 (348)
T ss_pred EEEEEECCCcEEEEEEECC--eEEEEE
Confidence 6789999999999999988 566543
No 203
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=36.33 E-value=1.6e+02 Score=24.76 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
++.|+++|+++|-+.-.|.+...+.. .+.|+++++...
T Consensus 110 ~~~gi~~vvi~G~~t~~CV~~Ta~~A--~~~Gy~v~vv~D 147 (179)
T cd01015 110 TARGVDTLIVAGCSTSGCIRATAVDA--MQHGFRPIVVRE 147 (179)
T ss_pred HHcCCCEEEEeeecccHhHHHHHHHH--HHCCCeEEEeec
Confidence 45689999999999988888876543 467999877754
No 204
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=36.10 E-value=1.2e+02 Score=28.85 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=32.0
Q ss_pred CeEEEEcchhhhHHHHHHHHHHHHhC-----CcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 264 NKLVVVGGVGANKQLRKKLNILKKQY-----NYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 264 ~~v~laGGVa~N~~l~~~l~~~l~~~-----~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
.+|+++||.++=..+.++|.+.|... .++++.++. ...-+.=+|+..+.
T Consensus 312 ~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~--~~~~~aW~Ggsila 365 (393)
T PF00022_consen 312 SNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPS--DRQFAAWIGGSILA 365 (393)
T ss_dssp TTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T---TTTSHHHHHHHHHH
T ss_pred cceEEecccccccchHHHHHHHhhhhhhccccceeccCch--hhhhcccccceeee
Confidence 68999999999999999998888762 346666652 11223445554444
No 205
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=36.08 E-value=2.1e+02 Score=29.66 Aligned_cols=50 Identities=10% Similarity=0.095 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcchhhh--HHHHH-HHHHHHHhC
Q psy9394 240 RGFLDAIIDVLTFKCIAALKNTG-INKLVVVGGVGAN--KQLRK-KLNILKKQY 289 (339)
Q Consensus 240 a~~q~~l~~~l~~~~~~~~~~~~-~~~v~laGGVa~N--~~l~~-~l~~~l~~~ 289 (339)
..+-+.+.+.+...+..+.-.++ ...|+++|||+.+ ..+.+ .+.+.+.++
T Consensus 246 ~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~k 299 (638)
T PRK14101 246 LEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAK 299 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhC
Confidence 33444444444444444544555 5789999999865 33432 455555554
No 206
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=35.47 E-value=69 Score=30.86 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
+....+++.+|+++|++++|||+|-.. +.|
T Consensus 274 ~~~~~a~~~Al~~Agi~~~dId~i~~h-gtg 303 (407)
T cd00828 274 KGIARAIRTALAKAGLSLDDLDVISAH-GTS 303 (407)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEecc-ccc
Confidence 445678999999999999999998543 444
No 207
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=34.76 E-value=1e+02 Score=28.94 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEcchhhhHHHHHHHHHHH
Q psy9394 239 ARGFLDAIIDVLTFKCIAALKNT---GINKLVVVGGVGANKQLRKKLNILK 286 (339)
Q Consensus 239 Aa~~q~~l~~~l~~~~~~~~~~~---~~~~v~laGGVa~N~~l~~~l~~~l 286 (339)
...+...+.+-+.+.+..+..+. .+..|+|+||.+.-..+.+.+.+.+
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l 306 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL 306 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH
Confidence 33333444444444444333332 3578999999999999999998877
No 208
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=34.52 E-value=62 Score=30.28 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC-CCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR-GPGLP 86 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~-gPG~~ 86 (339)
+-...+++++|+++|++++|||.|++.. .|++.
T Consensus 63 ~la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~ 96 (338)
T PRK09258 63 DGAIAAGRKALAEAGIDPSDIGLLINTSVCRDYL 96 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCC
Confidence 3445789999999999999999997643 45554
No 209
>PRK13320 pantothenate kinase; Reviewed
Probab=34.21 E-value=1.1e+02 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.3
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEE
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSH 28 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~ 28 (339)
|++|.||.++..++.++++++ +++..
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~--~~~~~ 27 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGD--ELLEV 27 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECC--EEEEE
Confidence 579999999999999999977 56643
No 210
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=33.83 E-value=57 Score=31.60 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++.+|+++|++++|||.|++..
T Consensus 28 ~La~~A~~~AL~~agl~~~dID~vi~g~ 55 (393)
T PRK05656 28 ELGAAVIRRLLEQTGLDPAQVDEVILGQ 55 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEE
Confidence 3345789999999999999999998743
No 211
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=33.83 E-value=1.2e+02 Score=27.49 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcch
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNT-GINKLVVVGGV 272 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~-~~~~v~laGGV 272 (339)
..+.+.+++-......+...++++.+.. +...++++||.
T Consensus 183 T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~ 222 (251)
T COG1521 183 TVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGL 222 (251)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCc
Confidence 4566667777777777777788887776 45689999993
No 212
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=33.72 E-value=89 Score=29.23 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=23.2
Q ss_pred hCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEE-ccCCCCCChhH
Q psy9394 261 TGINKLVVVGGVGANKQLRKKLNILKKQYNYTVF-YPKKEFCTDNG 305 (339)
Q Consensus 261 ~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~-~~~~~~~~D~G 305 (339)
...++|+|+||-|. .+...|.+.+. ...++ ++.++++|-.|
T Consensus 272 ~~~~~Iil~GGGa~--ll~~~l~~~f~--~~~i~~~~dp~~ANarG 313 (320)
T TIGR03739 272 ESIQNIVLVGGGAF--LFKKAVKAAFP--KHRIVEVDEPMFANVRG 313 (320)
T ss_pred CcccEEEEeCCcHH--HHHHHHHHHCC--CCeeEecCCcHHHHHHH
Confidence 35789999999886 34455555432 23443 44434444433
No 213
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=33.24 E-value=79 Score=30.65 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
+....+++.+|+++|++++|||+|... |.|.
T Consensus 270 ~~~~~a~~~al~~ag~~~~~i~~v~~h-gtgt 300 (399)
T cd00832 270 PGLARAIRLALADAGLTPEDVDVVFAD-AAGV 300 (399)
T ss_pred HHHHHHHHHHHHHcCCCHHHccEEEec-cCcC
Confidence 445678999999999999999998643 4443
No 214
>PF14239 RRXRR: RRXRR protein
Probab=33.19 E-value=85 Score=26.89 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.3
Q ss_pred EEEEEecCCCceeEEEEECCCCceeEE
Q psy9394 2 IILGIESSCDDSGLALYDTHIKNLRSH 28 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~~~~~~i~~~ 28 (339)
..||||.++..+++|++.++ ++++.
T Consensus 52 i~lgiDpGsk~tGiav~~~~--~vl~~ 76 (176)
T PF14239_consen 52 IRLGIDPGSKTTGIAVVSEK--KVLWA 76 (176)
T ss_pred EEEEECCCCCeEEEEEEeCC--EEEEE
Confidence 46899999999999999988 56654
No 215
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=33.04 E-value=1.6e+02 Score=25.52 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=39.1
Q ss_pred EEEEecCCCceeEEEEECCCCceeE-EEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRS-HVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+|.||.++..++.++.+++ +++. ..++.... .. ......+...+...++..+.+ ..+.++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~--~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~----~v~isSV 62 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD--KLIDPSGRISHST---AL---------DSSSDELLELLESLLPQPKID----AVIISSV 62 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT--EEEE-EEEE-EEE---CT---------TSSHHHHHHHHHHHHHCTTCG----EEEEEES
T ss_pred CEEEEECCCeEEEEEEECC--EEEeeeeEEEecc---cc---------cccHHHHHHHHHHHhccccCC----cEEEEEc
Confidence 6899999999999999988 5665 33331100 00 111344556677777765542 5667777
Q ss_pred CCC
Q psy9394 82 GPG 84 (339)
Q Consensus 82 gPG 84 (339)
.|-
T Consensus 63 ~~~ 65 (206)
T PF03309_consen 63 VPE 65 (206)
T ss_dssp SGH
T ss_pred CCH
Confidence 774
No 216
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=32.48 E-value=1.2e+02 Score=26.73 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++++|+++|++++|+|.|.+..
T Consensus 9 ~l~~~A~~~al~~ag~~~~~i~~li~~~ 36 (254)
T cd00327 9 ELGFEAAEQAIADAGLSKGPIVGVIVGT 36 (254)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEEE
Confidence 3345788999999999999999987754
No 217
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=32.38 E-value=67 Score=31.04 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+-...+++.+|+++|++++|||.+++.
T Consensus 28 ~L~~~a~~~al~dagi~~~dID~vi~g 54 (388)
T PRK06366 28 QLGGAAIKAVIDDAKLDPALVQEVIMG 54 (388)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 445578999999999999999999875
No 218
>PLN03173 chalcone synthase; Provisional
Probab=32.32 E-value=1.1e+02 Score=29.69 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 52 HIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 52 ~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
-.+.++..++.+|++.|++..|+|.+++ |||.
T Consensus 275 ~~~~~~~~i~~~L~~~gl~~~di~~~v~--Hqgg 306 (391)
T PLN03173 275 ISKNVEKSLTEAFKPLGISDWNSLFWIA--HPGG 306 (391)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCeEEE--CCCc
Confidence 3455778999999999999999999875 7874
No 219
>PLN03169 chalcone synthase family protein; Provisional
Probab=32.28 E-value=1.2e+02 Score=29.42 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCCCCCcCEEEEeCCCCCC
Q psy9394 57 IPLLSKLLKNSNLELKKIDIIAYTRGPGLP 86 (339)
Q Consensus 57 ~~~i~~~l~~~~i~~~did~ia~~~gPG~~ 86 (339)
..+.+++|+++|++++|||.|++..-|++.
T Consensus 111 ~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~ 140 (391)
T PLN03169 111 VEASLACIKEWGRPVSDITHLVYVSSSEAR 140 (391)
T ss_pred HHHHHHHHHHhCCCHHHCCEEEEECcCCCC
Confidence 468999999999999999987766556654
No 220
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.20 E-value=58 Score=33.24 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=22.3
Q ss_pred CCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCE
Q psy9394 69 LELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPV 107 (339)
Q Consensus 69 i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~ 107 (339)
.-|.....|=||.+||-+.+| +.+|..+|+++
T Consensus 75 ~lP~~tkLVQVTg~~g~~~sL-------~~lArr~G~~~ 106 (652)
T COG2433 75 RLPEGTKLVQVTGRPGEQESL-------WELARRHGIRV 106 (652)
T ss_pred hCCCCceEEEEeCCCCCcchH-------HHHHHHhCCCC
Confidence 445567788899999988664 45666666654
No 221
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.98 E-value=59 Score=30.33 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+.++..++.+|+++|++++|||.+...
T Consensus 230 ~~~~~~i~~~L~~~gl~~~did~~~~H 256 (329)
T PRK07204 230 KYLMKFIDKLLMDAGYTLADIDLIVPH 256 (329)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEeC
Confidence 346688999999999999999999863
No 222
>PRK04262 hypothetical protein; Provisional
Probab=31.88 E-value=79 Score=29.87 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 53 IQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 53 ~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
.+.++..++.+|+++|++++|||.+++.
T Consensus 208 ~~~~~~~i~~~L~~~gl~~~dId~~v~H 235 (347)
T PRK04262 208 FKHIISAAKGLMEKLGLKPSDYDYAVFH 235 (347)
T ss_pred HHHHHHHHHHHHHHhCcCHHHhceeecC
Confidence 3567789999999999999999999863
No 223
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=31.42 E-value=3.2e+02 Score=26.65 Aligned_cols=39 Identities=15% Similarity=-0.055 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCc
Q psy9394 252 FKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNY 291 (339)
Q Consensus 252 ~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~ 291 (339)
+...+..+.+|-..+||+||-+.=-.-.+.+... .+.|+
T Consensus 72 ~ff~~~r~~fGrtAlvlsGGg~~G~~h~Gv~kaL-~e~gl 110 (391)
T cd07229 72 DFFHDTRQSFGRTALVLQGGSIFGLCHLGVVKAL-WLRGL 110 (391)
T ss_pred HHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHHH-HHcCC
Confidence 4455566667889999999998877777766554 44565
No 224
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=31.25 E-value=70 Score=31.06 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+-...+++.+|+++|++++|||.|++.
T Consensus 33 eL~~~a~~~aL~~Agi~~~dID~vi~G 59 (397)
T PRK06954 33 QLGAAAIAAAVERAGLKPEQIDEVVMG 59 (397)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEEEE
Confidence 334578999999999999999999875
No 225
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=31.07 E-value=84 Score=27.72 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+.+...++++|+++|++++|+|.+...
T Consensus 145 ~~~~~~i~~~l~~ag~~~~did~~~~h 171 (254)
T cd00327 145 EGLARAARKALEGAGLTPSDIDYVEAH 171 (254)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEcc
Confidence 445678999999999999999998764
No 226
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=31.03 E-value=2.3e+02 Score=25.74 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=29.4
Q ss_pred hCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccC
Q psy9394 261 TGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297 (339)
Q Consensus 261 ~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~ 297 (339)
.|..-++++-|...+..+.+.|.+..++.|..+++|.
T Consensus 84 ~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 84 NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 4666677777777788888899998888888888864
No 227
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=30.69 E-value=98 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=21.5
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEEE
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHVI 30 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~~ 30 (339)
++|||.+-+...+|+++.+ +++.....
T Consensus 1 ~vGiDv~k~~~~v~v~~~~-~~~~~~~~ 27 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPN-GEKLRRFK 27 (144)
T ss_pred eEEEEcccCeEEEEEEcCC-CcEEEEEE
Confidence 5899999999999999987 54555443
No 228
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=30.60 E-value=1.2e+02 Score=24.92 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
++.++++|+++|-..-.|.+...+.. .+.|+++++...
T Consensus 95 ~~~gi~~viv~G~~td~CV~~Ta~~a--~~~g~~v~vi~D 132 (155)
T cd01014 95 REAGIDHLVICGAMTEMCVDTTVRSA--FDLGYDVTVVAD 132 (155)
T ss_pred HHCCCCEEEEEeeccchhHHHHHHHH--HHCCCcEEEecc
Confidence 35689999999999999999887543 457999888753
No 229
>PLN02362 hexokinase
Probab=30.58 E-value=3e+02 Score=27.86 Aligned_cols=50 Identities=24% Similarity=0.171 Sum_probs=30.0
Q ss_pred eEEEEcchhhhH-----HHHHHHHHHHHhC-CcEEEccCCCCCChhHHHHHHHHHHHHHh
Q psy9394 265 KLVVVGGVGANK-----QLRKKLNILKKQY-NYTVFYPKKEFCTDNGAMIAFAGAMRIEN 318 (339)
Q Consensus 265 ~v~laGGVa~N~-----~l~~~l~~~l~~~-~~~v~~~~~~~~~D~G~aiG~a~~~~~~~ 318 (339)
.|.+-|||+..- .+.+.+.+.+.+. ..+|.+-. +.| |..+|+|..+....
T Consensus 444 ~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~---a~D-GSgvGAAl~AA~~~ 499 (509)
T PLN02362 444 VVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKA---TED-GSGIGSALLAASYS 499 (509)
T ss_pred EEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEE---ccC-chHHHHHHHHHHHH
Confidence 889999999543 6666666665322 22444443 455 66667766665443
No 230
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=30.56 E-value=64 Score=31.08 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-..++++.+|+++|++++|||.|++..
T Consensus 24 ~La~~A~~~AL~dAgl~~~dID~vi~~~ 51 (386)
T cd00751 24 DLGAAVIKALLERAGLDPEEVDDVIMGN 51 (386)
T ss_pred HHHHHHHHHHHHhcCCCHHHCCEEEEEe
Confidence 4445789999999999999999998753
No 231
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=30.40 E-value=66 Score=30.58 Aligned_cols=31 Identities=3% Similarity=0.102 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
.....+++++|+++|++++|||+|-+. |+|.
T Consensus 206 ~~~~~ai~~AL~~Agl~p~dIdyIeaH-gtgT 236 (342)
T PRK14691 206 DGAYRAMKIALRQAGITPEQVQHLNAH-ATST 236 (342)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEec-CCCC
Confidence 445578999999999999999998653 4443
No 232
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=30.28 E-value=99 Score=29.46 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCE
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPV 107 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~ 107 (339)
+..+..++.+|+++|++++|||.+++ ||+.- |+ .+.+...+++|-
T Consensus 242 ~~~~~~i~~~L~~~gl~~~did~~v~--HQ~~~---~i----~~~i~~~Lgl~~ 286 (353)
T PRK12880 242 ECEPKSFKEILEFSKVDEKDIAFHLF--HQSNA---YL----VDCIKEELKLND 286 (353)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEE--CCCCH---HH----HHHHHHHhCCCH
Confidence 34567899999999999999999987 55542 22 344445555553
No 233
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=30.19 E-value=1.1e+02 Score=28.78 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcCEEEEeC----CCCCCchhHHHHHHHHHHHHhcCCCEEeecch
Q psy9394 53 IQTIIPLLSKLLKNSNLELKKIDIIAYTR----GPGLPGSLLVGSSIACSIALSINKPVIGINHL 113 (339)
Q Consensus 53 ~~~l~~~i~~~l~~~~i~~~did~ia~~~----gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~ 113 (339)
.+.+..++++.|+++|+.+..|+.|+.-. -|| ...++..++.|+..++--
T Consensus 207 ~e~i~~ai~~~L~~~~i~~~~i~~iatid~K~~E~g-----------L~~~a~~lg~pl~~~~~~ 260 (315)
T PRK05788 207 AEEIAEAVERALEALNIDPRAVKAIASITLKKDEPG-----------LLQLAEELGVPFITFSKE 260 (315)
T ss_pred HHHHHHHHHHHHHHcCCCHHHccEEeeeeccCCCHH-----------HHHHHHHhCCCeEEeCHH
Confidence 35577899999999999999999998542 243 246777889998877643
No 234
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=30.19 E-value=86 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEE-eCCCCCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAY-TRGPGLP 86 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~-~~gPG~~ 86 (339)
...+.+++|+++|++++|||.|++ +..|++.
T Consensus 64 a~~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~ 95 (353)
T PRK12880 64 GKHAANTLLQGLNIDKNSLDALIVVTQSPDFF 95 (353)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCC
Confidence 457899999999999999998865 4456665
No 235
>PRK13331 pantothenate kinase; Reviewed
Probab=30.09 E-value=1.4e+02 Score=27.09 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=42.8
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE-E
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA-Y 79 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia-~ 79 (339)
|.+|.||.++..+.+++.+++ +++..-| +. ...... +..+|+..++++++++.++ +
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~--~~~~~~r-t~----------------~~~t~d----~~~~l~~~~~~~~~i~~~iis 63 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGE--TLVKTWD-TP----------------HLDESI----IQLLLPGQTLLIVAPNPLVIA 63 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECC--EEEEEEE-cC----------------CcchHH----HHHHHHHcCCCccccCEEEEE
Confidence 689999999999999999987 5664322 21 011111 6777888888888887655 4
Q ss_pred eCCCCC
Q psy9394 80 TRGPGL 85 (339)
Q Consensus 80 ~~gPG~ 85 (339)
+.-|-.
T Consensus 64 SVVP~~ 69 (251)
T PRK13331 64 SVVPQQ 69 (251)
T ss_pred ecCccH
Confidence 555743
No 236
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=30.08 E-value=1.9e+02 Score=25.68 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHH
Q psy9394 245 AIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKK 281 (339)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~ 281 (339)
.+++.+.+.++...++.+.-+|+|+||-.-.......
T Consensus 11 ~~a~~i~~~i~~~i~~~~~~~lalsGGstp~~~y~~L 47 (233)
T TIGR01198 11 ALAERIATKLQTALAERGQFSLALSGGRSPIALLEAL 47 (233)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEECCCccHHHHHHHH
Confidence 4445555566666666676789999998776655543
No 237
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=29.51 E-value=98 Score=30.03 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLP 86 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~ 86 (339)
+-..++++++|+++|++++|||.+++..-|..+
T Consensus 31 ~L~~~A~~~Al~dagl~~~dID~~i~~~~~~~~ 63 (392)
T PRK06065 31 ELAWEAASKALDEAGLELKDIDCVVIGSAPDAF 63 (392)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeccCCcc
Confidence 445678999999999999999999886434444
No 238
>PLN03170 chalcone synthase; Provisional
Probab=29.44 E-value=1.2e+02 Score=29.50 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 58 PLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 58 ~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
.+.+++|+++|++++|||.|++..
T Consensus 112 ~Aa~~AL~~ag~~~~dId~lI~~T 135 (401)
T PLN03170 112 AAAQKAIKEWGQPKSKITHLVFCT 135 (401)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEc
Confidence 678999999999999999876544
No 239
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.38 E-value=1.1e+02 Score=28.61 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRG 82 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~g 82 (339)
+-...+.+++|+++|++++|||.+++...
T Consensus 54 ~la~~Aa~~aL~~ag~~~~dId~li~~~~ 82 (329)
T PRK07204 54 YMGAEAAKKAVEDAKLTLDDIDCIICASG 82 (329)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 33457889999999999999999887643
No 240
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=29.12 E-value=1.2e+02 Score=25.14 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 258 LKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 258 ~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
+++.|+++|+++|-..-.|.+...+.. .+.|++++++..
T Consensus 107 L~~~gi~~vil~G~~t~~CV~~Ta~~a--~~~g~~v~v~~D 145 (174)
T PF00857_consen 107 LRKRGIDTVILCGVATDVCVLATARDA--FDRGYRVIVVED 145 (174)
T ss_dssp HHHTTESEEEEEEESTTTHHHHHHHHH--HHTT-EEEEEEE
T ss_pred ccccccceEEEcccccCcEEehhHHHH--HHCCCEEEEECh
Confidence 345689999999999999987776543 457999887764
No 241
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=28.97 E-value=2e+02 Score=25.49 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhC--CcEEEc
Q psy9394 247 IDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQY--NYTVFY 295 (339)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~--~~~v~~ 295 (339)
...+.++++.+. ++|.+++++..|=.-|....+...+++... +..+++
T Consensus 85 ~~~l~di~~sl~-~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~ 134 (237)
T PF02633_consen 85 IALLRDILRSLA-RHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFV 134 (237)
T ss_dssp HHHHHHHHHHHH-HHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEE
T ss_pred HHHHHHHHHHHH-HcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEE
Confidence 344444555444 469999999888777886666565555554 565543
No 242
>PRK13327 pantothenate kinase; Reviewed
Probab=28.96 E-value=1.6e+02 Score=26.61 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcchh
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTGI-NKLVVVGGVG 273 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~-~~v~laGGVa 273 (339)
...+-|..++...+...+..+++++.++++. -+++++||-+
T Consensus 170 ~T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~~~vilTGG~A 211 (242)
T PRK13327 170 DTDDALTSGCDGAAVALIERSLQHAHRSLGQPVRLLVHGGGA 211 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCH
Confidence 4567778888888888888888888877763 4799999954
No 243
>PLN03168 chalcone synthase; Provisional
Probab=28.23 E-value=1.5e+02 Score=28.61 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 58 PLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 58 ~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
++.+++|+++|++++|||.|++...-|+
T Consensus 107 ~Aa~~AL~~ag~~~~dId~lI~~T~Tg~ 134 (389)
T PLN03168 107 EAAQKAIKEWGGRKSDITHIVFATTSGV 134 (389)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCC
Confidence 6888999999999999999976544333
No 244
>PRK09051 beta-ketothiolase; Provisional
Probab=28.21 E-value=91 Score=30.26 Aligned_cols=27 Identities=4% Similarity=0.194 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+-...+++.+|+++|++++|||.|.+.
T Consensus 29 eL~~~A~~~AL~~agi~~~dID~vi~g 55 (394)
T PRK09051 29 DLGATVVREALARAGVDPDQVGHVVFG 55 (394)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEEEe
Confidence 444578999999999999999998875
No 245
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.99 E-value=77 Score=29.64 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
...+..++.+|+++|++++|||.+++
T Consensus 239 ~~~~~~~~~~L~~~g~~~~did~~i~ 264 (338)
T PRK09258 239 ELAVDTWEAFLAQLGWAVEQVDRVIC 264 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEec
Confidence 34556899999999999999999886
No 246
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=27.94 E-value=1.1e+02 Score=29.45 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
.....+++.+|+++|++++|||.|.+. |.|.
T Consensus 279 ~~~~~a~~~al~~Agi~~~did~i~~h-gtgt 309 (421)
T cd00833 279 EAQAALIRRAYARAGVDPSDIDYVEAH-GTGT 309 (421)
T ss_pred HHHHHHHHHHHHHhCCCHHHCcEEEee-CCCC
Confidence 445578999999999999999999764 4443
No 247
>PLN03172 chalcone synthase family protein; Provisional
Probab=27.93 E-value=1.4e+02 Score=28.94 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 58 PLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 58 ~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
.+.+++|+++|++++|||.|++..
T Consensus 108 ~Aa~~aL~~ag~~~~dId~ii~~t 131 (393)
T PLN03172 108 EAAAKAIKEWGQPKSKITHLVFCT 131 (393)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEc
Confidence 678999999999999999876443
No 248
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=27.80 E-value=56 Score=30.86 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC-CCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR-GPGL 85 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~-gPG~ 85 (339)
.-...+.+++|+.+|++++|||.|++.. -|-+
T Consensus 54 ~la~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~ 86 (323)
T COG0332 54 DLAVEAARKALEDAGISPDDIDLIIVATSTPDH 86 (323)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCccc
Confidence 3345789999999999999999998754 3544
No 249
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=27.51 E-value=1e+02 Score=29.76 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-..++++.+|+++|++++|||.+++..
T Consensus 23 ~La~~A~~~Al~dAgl~~~dID~vv~g~ 50 (386)
T TIGR01930 23 DLGAAVIKELLERNPLDPELIDDVIFGN 50 (386)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 4345789999999999999999998753
No 250
>PRK06840 hypothetical protein; Validated
Probab=27.44 E-value=68 Score=30.09 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
+...++.+|+++|++++|||.+..
T Consensus 239 ~~~~i~~~L~~~gl~~~did~~~~ 262 (339)
T PRK06840 239 FLKVIREALRKSGYTPKDIDYLAI 262 (339)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEE
Confidence 557899999999999999999875
No 251
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=27.34 E-value=2.1e+02 Score=29.97 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCC-CEEeecchhHHhhhc
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINK-PVIGINHLEGHLLSP 120 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~-p~~~v~h~~aHa~s~ 120 (339)
+.+...++++|+.+++++.|||.|....|--....+| +.+...++. |+..++.-+|-|.++
T Consensus 334 ~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~------~~l~~~fg~~~~~~~nPdeaVA~GA 395 (657)
T PTZ00186 334 ERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVV------EEVKKFFQKDPFRGVNPDEAVALGA 395 (657)
T ss_pred HHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHH------HHHHHHhCCCccccCCCchHHHHhH
Confidence 3445678888999999999999998886644333333 233333333 445555555555543
No 252
>KOG2531|consensus
Probab=27.16 E-value=1.7e+02 Score=29.10 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.3
Q ss_pred EEEEecCCCceeEEEEECCCCceeEEE
Q psy9394 3 ILGIESSCDDSGLALYDTHIKNLRSHV 29 (339)
Q Consensus 3 iLgidts~~~~~~al~~~~~~~i~~~~ 29 (339)
.||+|.|+...++.+++.+ .+|+..+
T Consensus 11 fLG~DlSTQqlKaviids~-LnVv~~~ 36 (545)
T KOG2531|consen 11 FLGFDLSTQQLKAVIIDSN-LNVVHTE 36 (545)
T ss_pred eeeeecccceeEEEEEcCC-ccEEEEE
Confidence 6999999999999999877 6787654
No 253
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.15 E-value=1.7e+02 Score=27.73 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCeEEEEcchhhhHHHHHHHHHHHHhCCcE-EEccC
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG---INKLVVVGGVGANKQLRKKLNILKKQYNYT-VFYPK 297 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~---~~~v~laGGVa~N~~l~~~l~~~l~~~~~~-v~~~~ 297 (339)
....+++..|-..+..-|.+.+.-+....+ ++.++|+||.|-=..|-+.+.+++ +++ ...+|
T Consensus 255 ~y~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl---~~~t~vanP 320 (354)
T COG4972 255 DYGSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL---SIPTEVANP 320 (354)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh---CCCeEeeCH
Confidence 344556666666655555555554444433 579999999999999999999987 664 44444
No 254
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=27.09 E-value=95 Score=30.05 Aligned_cols=26 Identities=4% Similarity=0.102 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
...+++.+|+++|++++|||.+++..
T Consensus 30 ~~~a~~~aL~~agi~~~~Id~v~~G~ 55 (387)
T PRK07850 30 LGAVQRAVLDRAGIDPGDVEQVIGGC 55 (387)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 45789999999999999999998754
No 255
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=26.94 E-value=99 Score=24.75 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
...+++++|+++|++++|+|.+=+.
T Consensus 24 p~~A~~~al~~ag~~~~did~~Ei~ 48 (123)
T PF02803_consen 24 PVPAARKALERAGLTPDDIDVIEIN 48 (123)
T ss_dssp HHHHHHHHHHHHT--GGGESEEEE-
T ss_pred HHHHHHHHHHHhCCCccccchhhcc
Confidence 3468899999999999999999765
No 256
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=26.87 E-value=82 Score=30.28 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
..++.+++.+|+++|++++|||.++..
T Consensus 280 ~~~~~~i~~~L~~~gl~~~dId~~v~H 306 (379)
T PLN02326 280 RCVPQVIESALQKAGLTAESIDWLLLH 306 (379)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 346678999999999999999999863
No 257
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=26.69 E-value=1.1e+02 Score=29.83 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhC-CCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNS-NLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~-~i~~~did~ia~~ 80 (339)
+-...+++.+|+++ |++++|||.|.+.
T Consensus 33 eLa~~A~~~AL~~a~gl~~~dID~vi~g 60 (399)
T PRK09052 33 DLLAHVLRSAVAQVPGLDPKLIEDAIVG 60 (399)
T ss_pred HHHHHHHHHHHHhccCcCHHHCCEEEEE
Confidence 33457899999997 9999999999876
No 258
>PLN03169 chalcone synthase family protein; Provisional
Probab=26.55 E-value=1.4e+02 Score=28.94 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 53 IQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 53 ~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
.+.++..++++|+++|++++|+|-+.+-.|||.
T Consensus 280 ~~~~~~~i~~~L~~~gl~~~did~~~~v~Hq~n 312 (391)
T PLN03169 280 EDNIEGFCKKLMKKAGLVEKDYNDLFWAVHPGG 312 (391)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcceEEecCCC
Confidence 455677899999999999988983333348885
No 259
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=26.14 E-value=3.2e+02 Score=23.82 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 258 LKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 258 ~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
+++.++++|+++|=..-.|........ ...|+++++...
T Consensus 141 L~~~gi~~lvi~G~~t~~CV~~Ta~~a--~~~g~~v~vv~D 179 (212)
T PTZ00331 141 LKAHGVRRVFICGLAFDFCVLFTALDA--VKLGFKVVVLED 179 (212)
T ss_pred HHHCCCCEEEEEEeccCHHHHHHHHHH--HHCCCEEEEeCc
Confidence 345689999999999989998886543 357898877754
No 260
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=26.07 E-value=4.2e+02 Score=25.07 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCc
Q psy9394 252 FKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNY 291 (339)
Q Consensus 252 ~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~ 291 (339)
+..++..+.+|-..++|+||-+..-.-.+.+... .+.|+
T Consensus 57 ~ff~~~r~~~G~~aLvlsGGg~~g~~h~GVlkaL-~e~gl 95 (323)
T cd07231 57 AFFQETRHAFGRTALLLSGGAALGTFHVGVVRTL-VEHQL 95 (323)
T ss_pred HHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHHH-HHcCC
Confidence 3445555667888999999999988777766554 44565
No 261
>KOG0256|consensus
Probab=25.82 E-value=80 Score=30.84 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=22.4
Q ss_pred CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCC
Q psy9394 264 NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFC 301 (339)
Q Consensus 264 ~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~ 301 (339)
+.|+.+|+.+.|..+.-.|.+ .|..+++|-+.++
T Consensus 148 ~~Vv~~G~T~ane~l~fcLad----pgdafLvPtPyY~ 181 (471)
T KOG0256|consen 148 RVVVTNGATSANETLMFCLAD----PGDAFLVPTPYYP 181 (471)
T ss_pred ceEEecccchhhHHHHHHhcC----CCceeeecCCCCC
Confidence 455555667899988876543 5777788854443
No 262
>PLN02596 hexokinase-like
Probab=25.81 E-value=4.8e+02 Score=26.26 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---C--CeEEEEcchhhh-----HHHHHHHHHHHHhC-CcEEEccCCCCCChh
Q psy9394 236 ANIARGFLDAIIDVLTFKCIAALKNTG---I--NKLVVVGGVGAN-----KQLRKKLNILKKQY-NYTVFYPKKEFCTDN 304 (339)
Q Consensus 236 ~diAa~~q~~l~~~l~~~~~~~~~~~~---~--~~v~laGGVa~N-----~~l~~~l~~~l~~~-~~~v~~~~~~~~~D~ 304 (339)
..||..+...-++.++--+.-+.++.+ . -.|.+-|+|+.. ..+.+.+.+.+... ..++.+-. +. .
T Consensus 396 r~i~~~V~~RAArL~Aa~iaail~k~g~~~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~---s~-D 471 (490)
T PLN02596 396 AEVCDIVAERGARLAGAGIVGIIKKLGRIENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEH---SH-G 471 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEE---cc-C
Confidence 345555555555554444444555554 1 379999999943 35666666554211 12344332 33 4
Q ss_pred HHHHHHHHHHHHHhcC
Q psy9394 305 GAMIAFAGAMRIENNY 320 (339)
Q Consensus 305 G~aiG~a~~~~~~~~~ 320 (339)
|.++|+|..+...+..
T Consensus 472 GSG~GAAl~AA~~~~~ 487 (490)
T PLN02596 472 GSGAGALFLAACQTGE 487 (490)
T ss_pred chhHHHHHHHHhhccC
Confidence 7778888887665543
No 263
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=25.66 E-value=2.3e+02 Score=26.65 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
+..+++.+|++++++++|||.+..
T Consensus 55 ~~~A~~~al~Ka~l~~~dId~~~a 78 (329)
T PF07451_consen 55 QKEAVELALKKAGLKKEDIDYLFA 78 (329)
T ss_dssp HHHHHHHHHHHTT--GGG-SEEEE
T ss_pred HHHHHHHHHHHcCCCHHHCeEEEe
Confidence 447999999999999999998864
No 264
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=25.56 E-value=1.1e+02 Score=28.37 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=56.0
Q ss_pred EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCC-Cc--CEEEEe
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELK-KI--DIIAYT 80 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~-di--d~ia~~ 80 (339)
|.+|.+...+.++|++++ +.++.+.. +. + .+..+.+...++.++++.+.+.. .+ ..|++.
T Consensus 1 l~~DIGGT~i~~glvd~~-g~~l~~~~-~~-----------~----~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIA-PGEISQAK-TY-----------S----GLDFPSLEAVVRVYLEEHKVELKDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecC-CCceeeeE-EE-----------e----cCCCCCHHHHHHHHHHhcccccCCCcCeEEEEEe
Confidence 578999999999999865 34543321 11 0 01134566778888876543211 23 345544
Q ss_pred CCCCCC-----chhHHHHHHHHHHHHhcCC-CEEeecchhHHhhhc
Q psy9394 81 RGPGLP-----GSLLVGSSIACSIALSINK-PVIGINHLEGHLLSP 120 (339)
Q Consensus 81 ~gPG~~-----t~lr~g~~~ak~la~~~~~-p~~~v~h~~aHa~s~ 120 (339)
||-.. |.+.-.... +.+...+++ |+.-.+-..|.+++-
T Consensus 64 -Gpv~~~~v~~~nl~w~~~~-~~l~~~~g~~~V~l~ND~naaa~ge 107 (316)
T TIGR00749 64 -CPITGDWVAMTNHTWAFSI-AELKQNLGFSHLEIINDFTAVSYAI 107 (316)
T ss_pred -CcccCCEEEecCCCCeeCH-HHHHHhcCCCeEEEEecHHHHHcCC
Confidence 44211 111000122 356667787 588889999988873
No 265
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.26 E-value=2e+02 Score=23.63 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=21.3
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEcc
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~ 296 (339)
.+.|+++||= ++..-...+.+.+++.|+++.+-
T Consensus 62 ~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~ 94 (147)
T TIGR02826 62 ISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLY 94 (147)
T ss_pred CCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEE
Confidence 4578888888 66554445556667777765544
No 266
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=25.09 E-value=1e+02 Score=29.11 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 52 HIQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 52 ~~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
..+.....++.+|+++|++++|||.+++.
T Consensus 206 ~~~~~~~~~~~~L~~~gl~~~did~~i~H 234 (345)
T TIGR00748 206 YFHHVVTAAKGLMEKLGLTPEDFDYAVFH 234 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcCEEEeC
Confidence 44555678999999999999999999875
No 267
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=25.04 E-value=43 Score=24.64 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=12.6
Q ss_pred HHhCCCCCCCcCEEEEe
Q psy9394 64 LKNSNLELKKIDIIAYT 80 (339)
Q Consensus 64 l~~~~i~~~did~ia~~ 80 (339)
|+++|++++|||.++..
T Consensus 1 L~~~g~~~~did~~i~h 17 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPH 17 (90)
T ss_dssp HHHTT--GGGESEEEE-
T ss_pred CccccCCHHHCCEEEeC
Confidence 67899999999999875
No 268
>KOG2517|consensus
Probab=24.89 E-value=3.1e+02 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEecCCCceeEEEEE-CCCCceeE
Q psy9394 2 IILGIESSCDDSGLALYD-THIKNLRS 27 (339)
Q Consensus 2 ~iLgidts~~~~~~al~~-~~~~~i~~ 27 (339)
.++|||.+|.++-++|++ .+ ++++.
T Consensus 7 ~~~gIDvGTtSaR~~v~~~~~-~e~l~ 32 (516)
T KOG2517|consen 7 VVLGIDVGTTSARALVFNAKN-GELLS 32 (516)
T ss_pred eEEEEEcCCCceEEEEEecCC-Cccce
Confidence 479999999999999998 44 46665
No 269
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=24.85 E-value=85 Score=26.61 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=27.4
Q ss_pred eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhc
Q psy9394 265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENN 319 (339)
Q Consensus 265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~ 319 (339)
+|+|+||-+.--.-.+.+.. |++.++.+ + .. .|++.|+....++-.|
T Consensus 1 ~Lvl~GGG~rG~~~~Gvl~~-L~e~~~~~---d-~i---~GtSaGai~aa~~a~g 47 (194)
T cd07207 1 NLVFEGGGAKGIAYIGALKA-LEEAGILK---K-RV---AGTSAGAITAALLALG 47 (194)
T ss_pred CeEEcCchHHHHHHHHHHHH-HHHcCCCc---c-eE---EEECHHHHHHHHHHcC
Confidence 58999998887777665554 45555421 2 12 3455555554444444
No 270
>PLN02287 3-ketoacyl-CoA thiolase
Probab=24.81 E-value=1.1e+02 Score=30.42 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++.+|+++|++++|||.|++..
T Consensus 73 eLa~eA~~~AL~dAgl~~~dID~vv~G~ 100 (452)
T PLN02287 73 DLLAPVLKAVVEKTGLNPSEVGDIVVGT 100 (452)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3345789999999999999999998753
No 271
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=24.80 E-value=1.7e+02 Score=25.71 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHH
Q psy9394 244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRK 280 (339)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~ 280 (339)
..+++.+++.++...++.+.-.|+|+||-.--..+..
T Consensus 5 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~ 41 (219)
T cd01400 5 EALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYEL 41 (219)
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEEECCCccHHHHHHH
Confidence 3455666666777666667679999999877654443
No 272
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=24.71 E-value=88 Score=28.80 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+.+...++.+|+++|++++|||.+++.
T Consensus 223 ~~~~~~i~~~l~~~g~~~~di~~~~~h 249 (320)
T cd00830 223 RLMPESIEEALEKAGLTPDDIDWFVPH 249 (320)
T ss_pred HhhHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 345678999999999999999999864
No 273
>PLN02666 5-oxoprolinase
Probab=24.55 E-value=2.1e+02 Score=32.40 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=49.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----eEEEEcchh-hhHHHHHHHHHHHHhCCcE-EEccCCCCCChhH
Q psy9394 232 KKEKANIARGFLDAIIDVLTFKCIAALKNTGIN----KLVVVGGVG-ANKQLRKKLNILKKQYNYT-VFYPKKEFCTDNG 305 (339)
Q Consensus 232 ~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~----~v~laGGVa-~N~~l~~~l~~~l~~~~~~-v~~~~~~~~~D~G 305 (339)
..+.+++|.++.+...+.+.+.++......|.+ .++--||-+ +... .|.++| |++ +++|+. ....
T Consensus 453 g~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~~l~afGGagp~ha~---~lA~~l---gi~~vivP~~---~gv~ 523 (1275)
T PLN02666 453 DMSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHALACFGGAGPQHAC---AIARAL---GMSEVFVHRY---CGIL 523 (1275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEecCcHHHHHH---HHHHHc---CCCEEEeCCC---ccHH
Confidence 457889999999999999999999988887753 344445532 3322 233433 774 899973 2334
Q ss_pred HHHHHHHHH
Q psy9394 306 AMIAFAGAM 314 (339)
Q Consensus 306 ~aiG~a~~~ 314 (339)
.|+|++...
T Consensus 524 sA~G~~~ad 532 (1275)
T PLN02666 524 SAYGMGLAD 532 (1275)
T ss_pred HHHHHHhhh
Confidence 566766644
No 274
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=24.50 E-value=1.6e+02 Score=24.85 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHH
Q psy9394 248 DVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIA 309 (339)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG 309 (339)
+.+..+++++ -+++.+.|+-+...-+.+.+.+..++..+.+........++.|-.+|
T Consensus 26 ~v~ammIkkA-----krPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~ 82 (170)
T COG1880 26 EVVAMMIKKA-----KRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIG 82 (170)
T ss_pred HHHHHHHHhc-----CCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccc
Confidence 3444455554 37899999999988888888776654456666555445566666566
No 275
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=24.42 E-value=1.2e+02 Score=28.06 Aligned_cols=28 Identities=7% Similarity=0.234 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++++|+++|++++|||.|++..
T Consensus 50 ~l~~~a~~~aL~~ag~~~~~Id~li~~~ 77 (324)
T cd00827 50 TMAVEAARRALERAGIDPDDIGLLIVAT 77 (324)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 4455789999999999999999998743
No 276
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=24.38 E-value=1.2e+02 Score=29.35 Aligned_cols=27 Identities=4% Similarity=0.058 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+-..++++.+|+++|++++|||.|++.
T Consensus 27 ~L~~~a~~~al~dAgl~~~~ID~vv~g 53 (394)
T PLN02644 27 ELGSIAIQAALERAGVDPALVQEVFFG 53 (394)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 445578999999999999999999874
No 277
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=24.32 E-value=1.1e+02 Score=29.84 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++.+|+++|++++|||.+.+..
T Consensus 28 eL~~~a~~~al~~agi~~~~Id~v~~G~ 55 (401)
T PRK08131 28 DLAATVIRRLLEKSGFPGDDIEDVILGC 55 (401)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3345789999999999999999998753
No 278
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=24.29 E-value=98 Score=26.79 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHH
Q psy9394 245 AIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRK 280 (339)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~ 280 (339)
.+++.+.+.+....++.+.-.|+|+||-.-......
T Consensus 4 ~~a~~i~~~i~~~i~~~~~~~i~LsgGstp~~~y~~ 39 (199)
T PF01182_consen 4 AVAEAIAEAIEEAIAERGRAVIALSGGSTPKPLYQE 39 (199)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEE--SCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 445566666666666767779999999876654444
No 279
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=24.18 E-value=2.7e+02 Score=24.53 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=31.7
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChh
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDN 304 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~ 304 (339)
++.|+++|+++|=..-.|........ .+.|+++++... .|.|.
T Consensus 147 r~~gI~~lvi~Gv~T~~CV~sTar~A--~~~Gy~v~vv~D-a~a~~ 189 (226)
T TIGR03614 147 RARGIRNLVFTGIATNVCVESTLRDG--FHLEYFGVVLED-ATHQA 189 (226)
T ss_pred HHCCCCEEEEeccCccHhHHHHHHHH--HHCCCEEEEech-hccCC
Confidence 45689999999988888888876433 467998877754 45553
No 280
>PRK13322 pantothenate kinase; Reviewed
Probab=24.08 E-value=2.1e+02 Score=25.71 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcchh
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTGI-NKLVVVGGVG 273 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~-~~v~laGGVa 273 (339)
...+.|..++...+...+-.++.++.++.+. -.++++||-+
T Consensus 176 ~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~vilTGG~a 217 (246)
T PRK13322 176 NTVDAVERGCLLMLRGFIESQLEQARELWGPDFEIFLTGGDA 217 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCH
Confidence 3456677777777777888888888777653 4899999954
No 281
>PTZ00280 Actin-related protein 3; Provisional
Probab=24.01 E-value=80 Score=30.74 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHhC
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQY 289 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~~ 289 (339)
.+||+|+||.++=..+.++|.+.+.+.
T Consensus 313 ~~nIvL~GG~s~~~Gf~eRL~~El~~~ 339 (414)
T PTZ00280 313 YKNIVLSGGSTMFKGFDKRLQRDVRKR 339 (414)
T ss_pred hhcEEEeCCcccCcCHHHHHHHHHHHh
Confidence 468999999999999999998888763
No 282
>KOG0797|consensus
Probab=23.99 E-value=1.7e+02 Score=29.41 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=39.3
Q ss_pred EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA 78 (339)
Q Consensus 4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia 78 (339)
..+|.+...+++|.++|| -.+-.. ++++ +|||+ .+...+-++|.++|+...|.|.-.
T Consensus 278 CVVdiGAQkTsIaCVEdG--vs~~nt---ri~L--~YGGd-----------Ditr~f~~ll~rs~FPy~d~~v~~ 334 (618)
T KOG0797|consen 278 CVVDIGAQKTSIACVEDG--VSLPNT---RIIL--PYGGD-----------DITRCFLWLLRRSGFPYQDCDVLA 334 (618)
T ss_pred eEEEccCcceeEEEeecC--ccccCc---eEEe--ccCCc-----------hHHHHHHHHHHhcCCCcccccccc
Confidence 467888899999999988 343322 2222 68883 344567778888999888876654
No 283
>PLN03173 chalcone synthase; Provisional
Probab=23.93 E-value=2.2e+02 Score=27.59 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 58 PLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 58 ~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
.+.+++|+++|++++|||.|++..
T Consensus 108 ~Aa~~AL~~ag~~~~dId~li~~t 131 (391)
T PLN03173 108 EAAAKAIKEWGQPKSKITHLVFCT 131 (391)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEc
Confidence 688999999999999999875543
No 284
>PRK00292 glk glucokinase; Provisional
Probab=23.78 E-value=2.6e+02 Score=25.84 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcchhhh--HHHHH-HHHHHHHh
Q psy9394 241 GFLDAIIDVLTFKCIAALKNTGIN-KLVVVGGVGAN--KQLRK-KLNILKKQ 288 (339)
Q Consensus 241 ~~q~~l~~~l~~~~~~~~~~~~~~-~v~laGGVa~N--~~l~~-~l~~~l~~ 288 (339)
.+-+...+.+...+..+......+ .|++.||+..| ..+.+ .+.+.+.+
T Consensus 232 ~~~~~~~~~lg~~i~~l~~~~~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~ 283 (316)
T PRK00292 232 RTLSLFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRAAFED 283 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEeCchHHhHHhhhccHHHHHHHhc
Confidence 333344444444444455455676 79999998853 33334 44555544
No 285
>PRK04262 hypothetical protein; Provisional
Probab=23.78 E-value=1e+02 Score=29.09 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+-...+.+++|+++|++++|||.+++.
T Consensus 53 ~la~~Aa~~aL~~ag~~~~dId~li~~ 79 (347)
T PRK04262 53 TIAVEAARNALKRAGIDPKEIGAVYVG 79 (347)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 445578999999999999999988664
No 286
>PRK13321 pantothenate kinase; Reviewed
Probab=23.77 E-value=2.1e+02 Score=25.73 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcch
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTG-INKLVVVGGV 272 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~-~~~v~laGGV 272 (339)
...+-|..++.......+-.++.++.++.+ ...++++||-
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGG~ 224 (256)
T PRK13321 184 STVSSIQSGLYYGYAGLVEGIVARIKAELGGPPRVIATGGF 224 (256)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 345667777777777777777888877776 3479999993
No 287
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=23.70 E-value=83 Score=30.96 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++.+|+++++++++||.+++..
T Consensus 33 ~L~~~a~~~al~~agl~~~~Id~vi~G~ 60 (430)
T TIGR02446 33 DLGKMVVSELLARSEIDPKLIEQLVFGQ 60 (430)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3345789999999999999999998854
No 288
>PLN02929 NADH kinase
Probab=23.62 E-value=2.1e+02 Score=26.75 Aligned_cols=53 Identities=17% Similarity=0.387 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhCCCCC------------CCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecc
Q psy9394 52 HIQTIIPLLSKLLKNSNLEL------------KKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINH 112 (339)
Q Consensus 52 ~~~~l~~~i~~~l~~~~i~~------------~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h 112 (339)
..+.....+...|++.|++. .+.|.|++-.|-|-+ ||. ++.+ ..++|+++|+.
T Consensus 31 ~h~~~~~~~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~--L~a----a~~~--~~~iPvlGIN~ 95 (301)
T PLN02929 31 VHKDTVNFCKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTL--LQA----SHFL--DDSIPVLGVNS 95 (301)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHH--HHH----HHHc--CCCCcEEEEEC
Confidence 34456678888888888653 355888777677743 432 3333 46789999987
No 289
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=23.61 E-value=1.1e+02 Score=28.98 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 53 IQTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 53 ~~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
.+-...+.+++|+++|++++|||.|++.
T Consensus 51 ~~la~~Aa~~aL~~agl~~~dID~li~~ 78 (345)
T TIGR00748 51 ATIGVEAARNALKRAKIDPKDIGAVYVG 78 (345)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 3445578999999999999999999764
No 290
>PTZ00466 actin-like protein; Provisional
Probab=23.61 E-value=79 Score=30.48 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=23.0
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHh
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQ 288 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~ 288 (339)
..+|+|+||.++=..+.++|.+.+.+
T Consensus 299 ~~nIvL~GG~Sl~~Gf~~RL~~EL~~ 324 (380)
T PTZ00466 299 YSHIVLSGGTTMFHGFGDRLLNEIRK 324 (380)
T ss_pred hhcEEEeCCccccCCHHHHHHHHHHH
Confidence 47999999999999999999888865
No 291
>PRK13318 pantothenate kinase; Reviewed
Probab=23.53 E-value=2.2e+02 Score=25.68 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcchh
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTGI-NKLVVVGGVG 273 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~-~~v~laGGVa 273 (339)
...+-|..++...+...+-.+++++.++++. .+++++||-+
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~~~vi~TGG~a 225 (258)
T PRK13318 184 NTVEAMQSGIYYGYVGLVEGIVKRIKEELGKDPKVIATGGLA 225 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCch
Confidence 3466677777777777788888888877763 4799999964
No 292
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=23.38 E-value=1.6e+02 Score=22.58 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=18.1
Q ss_pred EEEcchh--hhHHHHHHHHHHHHhCCcEEEccC
Q psy9394 267 VVVGGVG--ANKQLRKKLNILKKQYNYTVFYPK 297 (339)
Q Consensus 267 ~laGGVa--~N~~l~~~l~~~l~~~~~~v~~~~ 297 (339)
.|+|.-| .+...++++.+.|++.|+++|.|.
T Consensus 2 YlAgp~F~~~~~~~~~~~~~~L~~~g~~v~~P~ 34 (113)
T PF05014_consen 2 YLAGPFFSEEQKARVERLREALEKNGFEVYSPQ 34 (113)
T ss_dssp EEESGGSSHHHHHHHHHHHHHHHTTTTEEEGGC
T ss_pred EEeCCcCCHHHHHHHHHHHHHHHhCCCEEEecc
Confidence 4555544 344555566666666666666665
No 293
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=23.37 E-value=2.6e+02 Score=22.41 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHH
Q psy9394 244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKK 287 (339)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~ 287 (339)
+.+++.|++.+.+..++...+.++|++.--....|++.|...+.
T Consensus 72 ~~Fa~~vA~~L~~~~~~~~~~~LvlvA~p~~LG~LR~~L~~~~~ 115 (138)
T PF10116_consen 72 ERFAREVADRLEKARRAGKFDRLVLVAPPRFLGLLREHLSKAVR 115 (138)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHhCHHHH
Confidence 34455566666777777788999999998877777777765543
No 294
>PF05908 DUF867: Protein of unknown function (DUF867); InterPro: IPR008585 This family consists of a number of bacterial and phage proteins with no known function and which are found in Bacillus species and the Lambda-like viruses.; PDB: 3A9L_A.
Probab=23.31 E-value=1e+02 Score=26.87 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=19.4
Q ss_pred CeEEEEcchhhhHHHHHHHHHHHHhCCcEE
Q psy9394 264 NKLVVVGGVGANKQLRKKLNILKKQYNYTV 293 (339)
Q Consensus 264 ~~v~laGGVa~N~~l~~~l~~~l~~~~~~v 293 (339)
...++.||- |..+.+.|.+.|...||++
T Consensus 104 ~~~v~vGG~--d~~l~~~i~~~L~~~Gf~v 131 (194)
T PF05908_consen 104 EETVYVGGR--DRELREAIAEALEKAGFTV 131 (194)
T ss_dssp S--EEEESS---HHHHHHHHHHHHHTT---
T ss_pred CCEEEECCC--CHHHHHHHHHHHHHcCCce
Confidence 367788884 9999999999999999987
No 295
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=23.26 E-value=84 Score=30.36 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLP 86 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~ 86 (339)
+-..++++.+|+++|++++|||.|++...|.++
T Consensus 26 eL~~eAa~~Al~dAgl~~~dID~iv~~~~~~~~ 58 (386)
T PRK08313 26 GLVREAIDRALADAGLTWDDIDAVVVGKAPDFF 58 (386)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEecccccc
Confidence 445578889999999999999999886555544
No 296
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.25 E-value=1.4e+02 Score=27.96 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCCeEEEEcc--hhhhH-HHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394 262 GINKLVVVGG--VGANK-QLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314 (339)
Q Consensus 262 ~~~~v~laGG--Va~N~-~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~ 314 (339)
+..+|+|+|= ...+. .+.+++.++|+ .++++-.. --.|+|.|..+
T Consensus 262 ~~~~IvLSGs~g~~r~~~~v~~~I~~~L~---~~V~~L~~-----ksAA~G~AiIA 309 (326)
T TIGR03281 262 KEAGVVLAGSGGTLREPINFSGKIKRVLS---CKVLVLDS-----ESAAIGLALIA 309 (326)
T ss_pred CCCcEEEeCcchhccCchHHHHHHHHHhC---CCeEEecc-----hhhhhhHHHHH
Confidence 4468999988 88888 89999999884 45554442 12445555444
No 297
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=23.20 E-value=4.3e+02 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=15.4
Q ss_pred EEEEEecCCCc----eeEEEEECCCCceeEEEEe
Q psy9394 2 IILGIESSCDD----SGLALYDTHIKNLRSHVIC 31 (339)
Q Consensus 2 ~iLgidts~~~----~~~al~~~~~~~i~~~~~~ 31 (339)
+||++.-+..+ +.+|+++++ |+++-..++
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~~-G~v~d~~~~ 38 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDEN-GEVLDHLKL 38 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-TT-S-EEEEEEE
T ss_pred EEEEEEcCCCCCCCCEEEEEECCC-CcEEEEEEE
Confidence 47888776554 455667776 788876554
No 298
>PLN03171 chalcone synthase-like protein; Provisional
Probab=23.18 E-value=1.9e+02 Score=28.02 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCCCCCcCEEEEe-CCCCCCch
Q psy9394 57 IPLLSKLLKNSNLELKKIDIIAYT-RGPGLPGS 88 (339)
Q Consensus 57 ~~~i~~~l~~~~i~~~did~ia~~-~gPG~~t~ 88 (339)
..+.+++|+++|++++|||.|++. .-|-++.+
T Consensus 113 ~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~ 145 (399)
T PLN03171 113 AEAAKKAIAEWGRPAADITHLVVTTNSGAHIPG 145 (399)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCc
Confidence 468899999999999999998763 33444433
No 299
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=23.09 E-value=1.4e+02 Score=29.34 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+-...+++.+|+++|++++|||.|++.
T Consensus 29 ~L~~~A~~~Al~dAgl~~~dID~vi~g 55 (426)
T PRK08170 29 DLAVAAGRALLNRQPFAPDDLDEVILG 55 (426)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 334578999999999999999988774
No 300
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=22.86 E-value=1e+02 Score=29.23 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.5
Q ss_pred CeEEEEcchhhhHHHHHHHHHHHHhC
Q psy9394 264 NKLVVVGGVGANKQLRKKLNILKKQY 289 (339)
Q Consensus 264 ~~v~laGGVa~N~~l~~~l~~~l~~~ 289 (339)
++|+|+||.++=..+.++|.+.+...
T Consensus 293 ~nIvltGG~s~i~Gl~~RL~~el~~~ 318 (373)
T smart00268 293 ENIVLSGGSTLIPGFGERLEKELKQL 318 (373)
T ss_pred hCeEeecccccCcCHHHHHHHHHHHh
Confidence 57999999999999999998888654
No 301
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.74 E-value=85 Score=29.97 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+.++..++++|+++|++++|||.++..
T Consensus 271 ~~~~~~i~~~L~~~gl~~~dId~~~~H 297 (372)
T PRK07515 271 PMVAEHIVEHLAENGLTPADVKRFWLH 297 (372)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 346688999999999999999999863
No 302
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.51 E-value=6.8e+02 Score=23.87 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=60.7
Q ss_pred CEEEEEecCCCceeEEEEECCCCceeEEEEee--ec----ccccc------------cCCccchHHH----HHH----HH
Q psy9394 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICS--QN----LVHKE------------YGGVVPELAA----RTH----IQ 54 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~--~~----~~~~~------------~~G~~~~~~~----~~~----~~ 54 (339)
|.++-+|.+...+.++++.++ ++++....+ .. .+.+. .+|-+|..-. +.. ..
T Consensus 193 ~~vav~~Igat~s~l~vi~~g--k~ly~r~~~~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~P~~y~~~vl~~f~~~l~~ 270 (354)
T COG4972 193 MKVAVFDIGATSSELLVIQDG--KILYTREVPVGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPTDYGSEVLRPFLGELTQ 270 (354)
T ss_pred hhheeeeecccceEEEEEECC--eeeeEeeccCcHHHHHHHHHHHhCCChhHhHHHHhCCCCCCchhHHHHHHHHHHHHH
Confidence 456778889999999999988 576642110 00 00111 1222332000 011 11
Q ss_pred HHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhc
Q psy9394 55 TIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120 (339)
Q Consensus 55 ~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~ 120 (339)
.+...|+..+...+. .+||.|.-+.|-+...| .+..+....++|...++-+...+..+
T Consensus 271 ei~Rslqfy~~~s~~--~~id~i~LaGggA~l~g------L~~~i~qrl~~~t~vanPf~~~~~~~ 328 (354)
T COG4972 271 EIRRSLQFYLSQSEM--VDIDQILLAGGGASLEG------LAAAIQQRLSIPTEVANPFAYMALNV 328 (354)
T ss_pred HHHHHHHHHHhcccc--ceeeEEEEecCCcchhh------HHHHHHHHhCCCeEeeCHHHHHhhhh
Confidence 233456666676655 48999988844333322 25667778889987777665554443
No 303
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=22.42 E-value=5.8e+02 Score=23.83 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCc
Q psy9394 252 FKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNY 291 (339)
Q Consensus 252 ~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~ 291 (339)
+..+...+.+|-..++|+||-+.--.-.+.+.. |.+.++
T Consensus 58 ~ff~~~r~~~g~~aLvlsGGg~~g~~h~Gvl~a-L~e~~l 96 (298)
T cd07206 58 DFFRRARHAFGRTALMLSGGASLGLFHLGVVKA-LWEQDL 96 (298)
T ss_pred HHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHH-HHHcCC
Confidence 344555556688899999999887666665554 444554
No 304
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=22.10 E-value=1.4e+02 Score=28.85 Aligned_cols=28 Identities=4% Similarity=0.069 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++.+|++++++++|||.|++..
T Consensus 25 el~~~a~~~Al~~agl~p~dID~vi~g~ 52 (393)
T cd00826 25 EAGAKAIAAALEPAGVAAGAVEEACLGQ 52 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEE
Confidence 3344688889999999999999887754
No 305
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=22.03 E-value=5e+02 Score=23.86 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.0
Q ss_pred hCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccC
Q psy9394 261 TGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297 (339)
Q Consensus 261 ~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~ 297 (339)
.|.+-+++|=|.+.+..+.++|.+..++.|-.+|+|.
T Consensus 85 ~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipS 121 (267)
T PRK13301 85 AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPA 121 (267)
T ss_pred cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeC
Confidence 3678899998999999999999999888788999986
No 306
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=21.95 E-value=1.7e+02 Score=26.87 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
+-...+++++|+++|+++++||.+++..
T Consensus 52 ~la~~A~~~al~~ag~~~~~Id~li~~~ 79 (320)
T cd00830 52 DLAVEAAKKALEDAGIDADDIDLIIVAT 79 (320)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 3345789999999999999999987753
No 307
>KOG4417|consensus
Probab=21.88 E-value=3.5e+02 Score=23.93 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=39.2
Q ss_pred EEEEEecCCCc-----eeEEEE--ECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy9394 2 IILGIESSCDD-----SGLALY--DTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKI 74 (339)
Q Consensus 2 ~iLgidts~~~-----~~~al~--~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~di 74 (339)
++.|||+|... ..+||+ +-...++++.. ++..+++.||. |..-..+-.+.+.+.++.+..+. .+-.+
T Consensus 43 yV~GiD~Sf~K~~S~~a~~~lv~~~lp~l~~v~~d-~~~~~Le~pYv---PgfLafREa~v~l~~L~~v~~er--h~fr~ 116 (261)
T KOG4417|consen 43 YVAGIDTSFAKLNSDMAYISLVFWTLPDLKHVATD-SDTRMLELPYV---PGFLAFREAEVMLDFLKSVITER--HEFRP 116 (261)
T ss_pred eeeeeccchhhcCCCceEEEEEEEecccceeeeeh-hhhhhhccCcC---ccceeeehhHHHHHHHHhccccc--CCccc
Confidence 46799997642 233333 32202455532 22334677774 43333444555666676665432 22368
Q ss_pred CEEEEeC
Q psy9394 75 DIIAYTR 81 (339)
Q Consensus 75 d~ia~~~ 81 (339)
|.|-|+.
T Consensus 117 dvilvDG 123 (261)
T KOG4417|consen 117 DVILVDG 123 (261)
T ss_pred cEEEEcC
Confidence 8898873
No 308
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=21.70 E-value=1.3e+02 Score=28.98 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 55 TIIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 55 ~l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
....+++.+|+++|++++|||+|-.. |+|
T Consensus 255 ~~~~ai~~Al~~agi~p~dId~i~~h-gtg 283 (381)
T PRK05952 255 SAIAAIQQCLARSGLTPEDIDYIHAH-GTA 283 (381)
T ss_pred HHHHHHHHHHHHhCCCHHHeeEEEcc-CCC
Confidence 45578999999999999999998543 444
No 309
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=21.66 E-value=3.6e+02 Score=22.95 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=28.4
Q ss_pred eeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCC
Q psy9394 13 SGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNL 69 (339)
Q Consensus 13 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i 69 (339)
..+++++++ +++++--+ |.+|.|......+-.+.+ ..+++.+++.|.
T Consensus 90 GG~vvv~~g--~v~a~lpL-------pi~GlmS~~~~eev~~~~-~~l~~~~~~lG~ 136 (171)
T PF13382_consen 90 GGIVVVDDG--EVLAELPL-------PIAGLMSDLPAEEVARQL-EELEEALRELGC 136 (171)
T ss_dssp SEEEEEETT--EEEEEEE--------TBTTTBBSS-HHHHHHHH-HHHHHHHHTTS-
T ss_pred CCEEEEECC--EEEEEEec-------cccceecCCCHHHHHHHH-HHHHHHHHHcCC
Confidence 467888888 68776432 567888775444444433 456667776665
No 310
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=21.63 E-value=1.7e+02 Score=27.00 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT 80 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~ 80 (339)
+.+...++.+|+++|++++|||.+...
T Consensus 205 ~~~~~~i~~al~~agl~~~did~~~~h 231 (332)
T cd00825 205 EGLARAAKEALAVAGLTVWDIDYLVAH 231 (332)
T ss_pred HHHHHHHHHHHHHcCCCHhHCCEEEcc
Confidence 445678999999999999999999765
No 311
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.56 E-value=3.8e+02 Score=26.42 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=24.1
Q ss_pred CcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhh
Q psy9394 73 KIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLL 118 (339)
Q Consensus 73 did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~ 118 (339)
.+|++..+.. =-|+.|-|...+|.+-. .++|++-+..+.--+.
T Consensus 336 gVDAVILTst--CgtC~r~~a~m~keiE~-~GiPvv~~~~~~pis~ 378 (431)
T TIGR01918 336 GVDAVILTST--UGTCTRCGATMVKEIER-AGIPVVHMCTVIPIAL 378 (431)
T ss_pred CCCEEEEcCC--CCcchhHHHHHHHHHHH-cCCCEEEEeecccHhh
Confidence 3466665422 12667777777776643 5677765555444333
No 312
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=21.51 E-value=1.3e+02 Score=27.85 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEcchhh----hHHHHHHHHHHHHhCCcEE
Q psy9394 244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGA----NKQLRKKLNILKKQYNYTV 293 (339)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~----N~~l~~~l~~~l~~~~~~v 293 (339)
+.+.+.+++-+..+.-.+-...+.+||=-+. -+-+.++|++.+...|+..
T Consensus 255 ~~l~e~vvK~v~tllps~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~ 308 (374)
T COG2441 255 NALIEGVVKDVFTLLPSTYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGI 308 (374)
T ss_pred HHHHHHHHHHHHHhccccCcceEEEeeecccccchhhHHHHHHHHHHhhcCccc
Confidence 3444555555555554455567888876553 2556666766665566643
No 313
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=21.43 E-value=4.8e+02 Score=21.69 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=33.3
Q ss_pred EEEEEecCCCc-----eeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCC
Q psy9394 2 IILGIESSCDD-----SGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNL 69 (339)
Q Consensus 2 ~iLgidts~~~-----~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i 69 (339)
++|+||.|+.. +.-|+.+++ .++-...... | ++....++...+...+..++++.++
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~~~--~~~~~si~~~---~-------k~Ks~~ER~k~ias~Lk~ii~~~d~ 63 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFKGS--DLVVGSIKAK---H-------KSKSFFERAKSIASELKTIIQKYDL 63 (159)
T ss_pred eeEEEEEecccCCCCCceeEEecCC--eEEEeeeeec---C-------cccCHHHHHHHHHHHHHHHHHHhCC
Confidence 68999999987 899999977 5543211111 0 1111233344455666767776665
No 314
>PLN03170 chalcone synthase; Provisional
Probab=21.42 E-value=3e+02 Score=26.74 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 52 HIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 52 ~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
..+.++..++.+|+++|++..|++.+++ |||
T Consensus 279 ~~~~i~~~v~~~L~~~gl~~~di~~~v~--Hqg 309 (401)
T PLN03170 279 ISKNIERSLEEAFKPLGITDYNSIFWVA--HPG 309 (401)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCeEEe--cCC
Confidence 3455777999999999999999998875 787
No 315
>PTZ00452 actin; Provisional
Probab=21.41 E-value=98 Score=29.75 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=23.1
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHh
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQ 288 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~ 288 (339)
.+||+|+||.++=..+.++|.+.+.+
T Consensus 294 ~~nIvL~GG~Sl~~Gf~~RL~~El~~ 319 (375)
T PTZ00452 294 CRNIVLSGGTTLFPGIANRLSNELTN 319 (375)
T ss_pred hccEEEecccccccCHHHHHHHHHHH
Confidence 47999999999999999999888865
No 316
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=21.39 E-value=1.8e+02 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
...+++.+|+++|++++|||.|-+. ++|.
T Consensus 277 ~~~ai~~Al~~Agi~~~dId~ve~h-~tgt 305 (407)
T TIGR03150 277 AARAMRAALKDAGINPEDVDYINAH-GTST 305 (407)
T ss_pred HHHHHHHHHHHcCCCHhHCCEEeCc-CCCC
Confidence 4568899999999999999998643 4443
No 317
>PRK13410 molecular chaperone DnaK; Provisional
Probab=21.33 E-value=2.7e+02 Score=29.16 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCC-CEEeecchhHHhhh
Q psy9394 53 IQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINK-PVIGINHLEGHLLS 119 (339)
Q Consensus 53 ~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~-p~~~v~h~~aHa~s 119 (339)
.+.+...++++|+++|+++.||+.|....|-.....+| +.+....+. |...++.-+|-|.+
T Consensus 308 ~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~------~~l~~~fg~~~~~~~npdeaVA~G 369 (668)
T PRK13410 308 LDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQ------QLVRTLIPREPNQNVNPDEVVAVG 369 (668)
T ss_pred HHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHH------HHHHHHcCCCcccCCCCchHHHHh
Confidence 44455678889999999999999998886654433332 223333343 33344544555443
No 318
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=21.28 E-value=7.2e+02 Score=23.65 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------Ce-EEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 233 KEKANIARGFLDAIIDVLTFKCIAALKNTGI-------NK-LVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~-------~~-v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
.+.++|+-+++..+. .+++.++..+++++. ++ ++++||-++=+.+.+.|.+. .+..+++.+.
T Consensus 247 i~s~ev~eal~~~v~-~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~e---t~~pv~ia~~ 316 (342)
T COG1077 247 INSEEIAEALEEPLN-GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEE---TGVPVIIADD 316 (342)
T ss_pred EcHHHHHHHHHHHHH-HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhc---cCCeEEECCC
Confidence 455677766666654 445556666666642 33 99999999988888887764 4778887764
No 319
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=21.23 E-value=2.1e+02 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394 259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298 (339)
Q Consensus 259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~ 298 (339)
+..++++|+++|=..-.|........ .+.|++++++..
T Consensus 138 ~~~gi~~lii~G~~T~~CV~~Ta~dA--~~~gy~v~v~~D 175 (212)
T PRK11609 138 REHGITELIVMGLATDYCVKFTVLDA--LALGYQVNVITD 175 (212)
T ss_pred HHcCCCEEEEEEeccCHHHHHHHHHH--HHCCCEEEEEee
Confidence 35689999999988888888886543 457999887754
No 320
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=21.01 E-value=1.5e+02 Score=28.91 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTR 81 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~ 81 (339)
...+++.+|+++|++++|||.|++..
T Consensus 32 a~~A~~~al~~agi~p~~ID~vi~G~ 57 (402)
T PRK08242 32 AAGLLEALRDRNGLDTAAVDDVVLGC 57 (402)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEEe
Confidence 34678999999999999999998754
No 321
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=21.00 E-value=1.5e+02 Score=23.63 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=26.7
Q ss_pred CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEcc
Q psy9394 263 INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296 (339)
Q Consensus 263 ~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~ 296 (339)
.+++++.|+-+.+....+.+.+..+..+..++-.
T Consensus 12 ~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t 45 (137)
T PF00205_consen 12 KRPVILAGRGARRSGAAEELRELAEKLGIPVATT 45 (137)
T ss_dssp SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEE
T ss_pred CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEec
Confidence 5789999999988888888888877778887643
No 322
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.91 E-value=2e+02 Score=26.61 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeC-CCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTR-GPGLP 86 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~-gPG~~ 86 (339)
+-...+++++|+++|++++|||.+.++. .|++.
T Consensus 55 ~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~ 88 (325)
T PRK12879 55 DLAIKAAERALARAGLDAEDIDLIIVATTTPDYL 88 (325)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCC
Confidence 3345789999999999999999987653 34443
No 323
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=20.89 E-value=1.7e+02 Score=28.65 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
+....+++++|+++|++++|||+|-+. ++|
T Consensus 299 ~~~~~a~~~Al~~Agi~~~dId~ve~h-gtg 328 (437)
T PLN02836 299 RGAVLAMTRALQQSGLHPNQVDYVNAH-ATS 328 (437)
T ss_pred HHHHHHHHHHHHHcCCCHhHcCEEEcc-CCc
Confidence 334568899999999999999998653 444
No 324
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=20.89 E-value=1.3e+02 Score=27.81 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
+.+...++.+|+++|++++|++.+++
T Consensus 219 ~~~~~~~~~~l~~~g~~~~di~~~~~ 244 (318)
T TIGR00747 219 RKMGDVVEETLEANGLDPEDIDWFVP 244 (318)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 34567889999999999999999986
No 325
>KOG0100|consensus
Probab=20.84 E-value=1.1e+02 Score=29.95 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=39.6
Q ss_pred HhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCC
Q psy9394 260 NTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYK 321 (339)
Q Consensus 260 ~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~ 321 (339)
+..+..++|.||...-....+.+.+-+. |- -|..-..-|.+++.|+|.-.=..+|..
T Consensus 360 KsdideiVLVGGsTrIPKvQqllk~fF~--GK---epskGinPdEAVAYGAAVQaGvlsGee 416 (663)
T KOG0100|consen 360 KSDIDEIVLVGGSTRIPKVQQLLKDFFN--GK---EPSKGINPDEAVAYGAAVQAGVLSGEE 416 (663)
T ss_pred cccCceEEEecCcccChhHHHHHHHHhC--CC---CccCCCChHHHHHhhhhhhhccccccc
Confidence 3457899999999999999987776542 21 233333458889999887665555653
No 326
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=20.83 E-value=1.5e+02 Score=28.94 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcCEEEEeCCCC
Q psy9394 55 TIIPLLSKLLKNSNLELKKIDIIAYTRGPG 84 (339)
Q Consensus 55 ~l~~~i~~~l~~~~i~~~did~ia~~~gPG 84 (339)
.+..+++++|+++|++++|||+|... |.|
T Consensus 290 ~~~~ai~~AL~~agi~p~dId~i~~H-gtg 318 (425)
T PRK06501 290 PAIGAIRAALADAGLTPEQIDYINAH-GTS 318 (425)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEec-Ccc
Confidence 46678999999999999999999653 444
No 327
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=20.73 E-value=1.9e+02 Score=27.93 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
...+++.+|+++|++++|||+|-.. |.|.
T Consensus 262 ~~~a~~~Al~~Agl~~~dId~v~~h-gtgt 290 (392)
T PRK09185 262 AILAMQQALADAGLAPADIGYINLH-GTAT 290 (392)
T ss_pred HHHHHHHHHHHcCCCHHHccEEEeC-CCCC
Confidence 3468899999999999999998543 4543
No 328
>PLN03172 chalcone synthase family protein; Provisional
Probab=20.67 E-value=1.8e+02 Score=28.16 Aligned_cols=32 Identities=13% Similarity=-0.050 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394 52 HIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL 85 (339)
Q Consensus 52 ~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~ 85 (339)
-.+.++..++++|++.|++..|++.+++ |||.
T Consensus 275 ~~~~i~~~~~~~L~~~gl~~~di~~~~~--Hqgg 306 (393)
T PLN03172 275 ISKNIEKSLVEAFAPIGINDWNSIFWIA--HPGG 306 (393)
T ss_pred HHHHHHHHHHHHhhhcCCCccccceEEe--cCCc
Confidence 3456778899999999999889998775 7874
No 329
>PRK06840 hypothetical protein; Validated
Probab=20.48 E-value=1.1e+02 Score=28.62 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEe--CCCCC
Q psy9394 54 QTIIPLLSKLLKNSNLELKKIDIIAYT--RGPGL 85 (339)
Q Consensus 54 ~~l~~~i~~~l~~~~i~~~did~ia~~--~gPG~ 85 (339)
+-...+++++|+++|++++|||.+++. .+|++
T Consensus 55 ~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~ 88 (339)
T PRK06840 55 DMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDY 88 (339)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCC
Confidence 334578999999999999999998742 35554
No 330
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=20.34 E-value=85 Score=29.48 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=20.4
Q ss_pred EEEEcchhhhHHHHHHHHHHHHhCCcEEEccC
Q psy9394 266 LVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297 (339)
Q Consensus 266 v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~ 297 (339)
|+++||++++..++. |.+.. ..+..+++.
T Consensus 2 V~igGGtGl~~ll~g-Lk~~~--~~ltaIVtv 30 (310)
T TIGR01826 2 VAIGGGTGLSVLLRG-LKELD--SRITAIVTV 30 (310)
T ss_pred EEEeCcchHHHHHHH-HHhcC--CCcEEEEEC
Confidence 789999999999987 44322 345666664
No 331
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.14 E-value=3.5e+02 Score=28.41 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.7
Q ss_pred CEEEEEecCCCceeEEEEECC
Q psy9394 1 MIILGIESSCDDSGLALYDTH 21 (339)
Q Consensus 1 M~iLgidts~~~~~~al~~~~ 21 (339)
|+.+|||++...+=+++++++
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~ 22 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDED 22 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCC
Confidence 678999999999999999887
No 332
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=20.14 E-value=1.7e+02 Score=28.54 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394 56 IIPLLSKLLKNSNLELKKIDIIAY 79 (339)
Q Consensus 56 l~~~i~~~l~~~~i~~~did~ia~ 79 (339)
...+++.+|+++|++++|||+|-.
T Consensus 288 ~~~a~~~Al~~agi~~~did~ie~ 311 (418)
T PRK07910 288 AGHAMTRAIELAGLTPGDIDHVNA 311 (418)
T ss_pred HHHHHHHHHHHhCCCHHHCCEEEc
Confidence 456899999999999999999953
No 333
>KOG0103|consensus
Probab=20.04 E-value=1e+03 Score=25.03 Aligned_cols=205 Identities=17% Similarity=0.202 Sum_probs=101.8
Q ss_pred CCCCCchh-HHHHHHHHHHHHhcC-CCEEeecchhHHhhhccc-cCCC---CCCcEEEEEEeCCeeE----EEEecCCcc
Q psy9394 82 GPGLPGSL-LVGSSIACSIALSIN-KPVIGINHLEGHLLSPFL-SNNS---LTFPFIALLVSGGHTQ----LIKVNSIGN 151 (339)
Q Consensus 82 gPG~~t~l-r~g~~~ak~la~~~~-~p~~~v~h~~aHa~s~~~-~s~~---~~~~~~~l~~dGg~~~----~~~~~~~~~ 151 (339)
=|-+||-. |-++.=|-.+ .| .|+.-++...|-|++.-. -.+. ...|-.++.+|=||+. +..- ..|.
T Consensus 144 vP~~FTd~qRravldAA~i---agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF-~kG~ 219 (727)
T KOG0103|consen 144 VPSYFTDSQRRAVLDAARI---AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF-TKGK 219 (727)
T ss_pred ccccccHHHHHHHHhHHhh---cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee-ccCc
Confidence 48899864 6555422222 22 255556666666654322 1122 1234456666766632 2222 3478
Q ss_pred eEEeeeccC-CcchhhhHH-----HHhHcCCCCC------cHHHH------H----hccccCCCCcccCCCccccCCCee
Q psy9394 152 YFLLGETLD-DAAGDTFDK-----IAKMLDLGYP------GGPEI------S----LISEFGDPNIYKFPRPMLYTNNFN 209 (339)
Q Consensus 152 ~~~~~~~~~-~s~G~~~d~-----va~~LG~~~~------gg~~l------e----~lA~~g~~~~~~~~~~l~~~~~~~ 209 (339)
++++++.++ ...||-||. ++.-.+-.|. ..+.+ | .|.+ ++ .+|..+ .|.
T Consensus 220 lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSA--N~---~~plNI----Ecf 290 (727)
T KOG0103|consen 220 LKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSA--NT---ELPLNI----ECF 290 (727)
T ss_pred ceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhc--Cc---CCCcch----hhe
Confidence 898988887 556777763 3333333331 11111 0 0111 10 112211 121
Q ss_pred eecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEcchhhhHHHHHHHHHHHHh
Q psy9394 210 FSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALK-NTGINKLVVVGGVGANKQLRKKLNILKKQ 288 (339)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~-~~~~~~v~laGGVa~N~~l~~~l~~~l~~ 288 (339)
+. ...+...+++ ..-+++++.+.+.+..-+.+.+..+.- .-.+.-|=+.||...-..+.+.|.+.+.
T Consensus 291 M~----d~dvs~~i~R-------eEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fg- 358 (727)
T KOG0103|consen 291 MN----DKDVSSKIKR-------EEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFG- 358 (727)
T ss_pred ee----cchhhhhccH-------HHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhC-
Confidence 11 0012222221 245666666665555555444443111 1124578899999999999999988652
Q ss_pred CCcEEEccCCCCCChhHHHHHHHHHHHH
Q psy9394 289 YNYTVFYPKKEFCTDNGAMIAFAGAMRI 316 (339)
Q Consensus 289 ~~~~v~~~~~~~~~D~G~aiG~a~~~~~ 316 (339)
-.+= ....-|.+++.|+|+--.+
T Consensus 359 --ke~s---~TlN~dEavarG~ALqcAI 381 (727)
T KOG0103|consen 359 --KELS---RTLNQDEAVARGAALQCAI 381 (727)
T ss_pred --Cccc---ccccHHHHHHHhHHHHHHh
Confidence 2111 1245678888887764333
No 334
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=20.02 E-value=7.2e+02 Score=23.15 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCC-CCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEE-eecchhHHhhhccccCCCCCCcEEE
Q psy9394 56 IIPLLSKLLKNSNLE-LKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVI-GINHLEGHLLSPFLSNNSLTFPFIA 133 (339)
Q Consensus 56 l~~~i~~~l~~~~i~-~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~-~v~h~~aHa~s~~~~s~~~~~~~~~ 133 (339)
...++++++++.... ..+-..++++. |.+++..+... .+..+...+.+.+ .++.-.|-+.++-.... .+..+
T Consensus 76 ~~~~l~~~~~~~~~~~~~~~p~~vitv-P~~~~~~~r~~--~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~---~~~~~ 149 (336)
T PRK13928 76 TEKMLKYFINKACGKRFFSKPRIMICI-PTGITSVEKRA--VREAAEQAGAKKVYLIEEPLAAAIGAGLDIS---QPSGN 149 (336)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEe-CCCCCHHHHHH--HHHHHHHcCCCceEecccHHHHHHHcCCccc---CCCeE
Confidence 344556665443221 12223455665 88888654322 2334455666643 45555555444332211 23334
Q ss_pred EEEe--CCeeEEEEecC
Q psy9394 134 LLVS--GGHTQLIKVNS 148 (339)
Q Consensus 134 l~~d--Gg~~~~~~~~~ 148 (339)
+++| ||.+.+..+..
T Consensus 150 lVvDiGggttdvsvv~~ 166 (336)
T PRK13928 150 MVVDIGGGTTDIAVLSL 166 (336)
T ss_pred EEEEeCCCeEEEEEEEe
Confidence 4445 45555555543
No 335
>PRK13324 pantothenate kinase; Reviewed
Probab=20.00 E-value=2.9e+02 Score=25.14 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcchh
Q psy9394 234 EKANIARGFLDAIIDVLTFKCIAALKNTGI-NKLVVVGGVG 273 (339)
Q Consensus 234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~~-~~v~laGGVa 273 (339)
..+-|..++-......+-.+++++.++++. -.++++||-+
T Consensus 185 T~~ai~sG~~~g~~~~i~~~~~~~~~~~~~~~~vi~TGG~a 225 (258)
T PRK13324 185 TKTNIRSGLYYGHLGALKELKRRSVEEFGSPVYTIATGGFA 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCh
Confidence 455666677777777777778888777764 3799999955
Done!