RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9394
(339 letters)
>gnl|CDD|236585 PRK09604, PRK09604, UGMP family protein; Validated.
Length = 332
Score = 509 bits (1313), Expect = 0.0
Identities = 179/339 (52%), Positives = 238/339 (70%), Gaps = 10/339 (2%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
M+ILGIE+SCD++ +A+ D + L S+V+ SQ +H YGGVVPELA+R H++ I+PL+
Sbjct: 1 MLILGIETSCDETSVAVVDDG-RGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLI 59
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
+ LK + L L+ ID IA T GPGL G+LLVG S A ++AL++NKP+IG+NHLEGHLL+P
Sbjct: 60 EEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPLIGVNHLEGHLLAP 119
Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
FL FPF+ALLVSGGHTQL+ V IG+Y LLGETLDDAAG+ FDK+AK+L LGYPG
Sbjct: 120 FLEEE-PEFPFLALLVSGGHTQLVLVKGIGDYELLGETLDDAAGEAFDKVAKLLGLGYPG 178
Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
GP I +++ GDP+ +KFPRPM +FSFSGLKT+VLN I+ + KA+IA
Sbjct: 179 GPAIDKLAKQGDPDAFKFPRPMDR-PGLDFSFSGLKTAVLNTIEKSEQT-----KADIAA 232
Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
F A++DVL K ALK TG+ LVV GGV AN LR++L L K+ VF P +
Sbjct: 233 SFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKL 292
Query: 301 CTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
CTDN AMIA AG R++ S+ + N +P+W ++++
Sbjct: 293 CTDNAAMIAAAGYERLKAGEFSD--LDLNARPRWPLDEL 329
>gnl|CDD|234330 TIGR03723, T6A_YgjD, tRNA threonylcarbamoyl adenosine modification
protein YgjD. This model represents bacterial members
of a protein family that is widely distributed. In a few
pathogenic species, the protein is exported in a way
that may represent an exceptional secondary function.
This model plus companion (archaeal) model TIGR03722
together span the prokaryotic member sequences of
TIGR00329, a protein family that appears universal in
life, and whose broad function is unknown. A member of
TIGR03722 has been characterized as a DNA-binding
protein with apurinic endopeptidase activity. In
contrast, the rare characterized members of the present
family show O-sialoglycoprotein endopeptidase (EC.
3.4.24.57) activity after export. These include
glycoprotease (gcp) from Pasteurella haemolytica A1 and
a cohemolysin from Riemerella anatipestifer
(GB|AAG39646.1). The member from Staphylococcus aureus
is essential and is related to cell wall dynamics and
the modulation of autolysis, but members are also found
in the Mycoplasmas (which lack a cell wall). A
reasonable hypothesis is that virulence-related
activities after export are secondary to a bacterial
domain-wide unknown function [Protein synthesis, tRNA
and rRNA base modification].
Length = 314
Score = 493 bits (1273), Expect = e-177
Identities = 174/315 (55%), Positives = 228/315 (72%), Gaps = 1/315 (0%)
Query: 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSK 62
ILGIE+SCD++ +A+ D K L S+V+ SQ +H YGGVVPELA+R H++ I PL+ +
Sbjct: 1 ILGIETSCDETAVAIVDDG-KGLLSNVVASQIELHARYGGVVPELASRAHLENIPPLIEE 59
Query: 63 LLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFL 122
L + L L ID IA T GPGL G+LLVG S A ++AL++NKP+IG+NHLEGHLL+PFL
Sbjct: 60 ALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFL 119
Query: 123 SNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGP 182
+ L FPF+ALLVSGGHTQL+ V +G+Y LLGETLDDAAG+ FDK+A++L LGYPGGP
Sbjct: 120 EDKPLEFPFLALLVSGGHTQLVLVKGVGDYELLGETLDDAAGEAFDKVARLLGLGYPGGP 179
Query: 183 EISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGF 242
I +++ GDP +KFPRPM +FSFSGLKT+VLN+I+ +K + +KA+IA F
Sbjct: 180 AIDKLAKEGDPKAFKFPRPMTGRPGLDFSFSGLKTAVLNLIEKLKQKGEELDKADIAASF 239
Query: 243 LDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCT 302
A++DVL K ALK+TG+ LVV GGV AN +LR++L L ++ VF P E CT
Sbjct: 240 QAAVVDVLVEKTKRALKDTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCT 299
Query: 303 DNGAMIAFAGAMRIE 317
DN AMIA AG R++
Sbjct: 300 DNAAMIAAAGYERLK 314
>gnl|CDD|223607 COG0533, QRI7, Metal-dependent proteases with possible chaperone
activity [Posttranslational modification, protein
turnover, chaperones].
Length = 342
Score = 457 bits (1179), Expect = e-163
Identities = 167/341 (48%), Positives = 238/341 (69%), Gaps = 6/341 (1%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
MIILGIE+SCD++G+A+ D + ++V+ SQ +H YGGVVPELA+R H++ I PL+
Sbjct: 1 MIILGIETSCDETGVAIVDEE--KILANVVASQIELHARYGGVVPELASRHHVENIPPLI 58
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
+ L + + L+ ID IA T GPGL G+LLVG++ A ++AL++NKP+I +NHLEGH+ +
Sbjct: 59 EEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAA 118
Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
L L FP +ALLVSGGHTQLI V IG Y +LGETLDDAAG+ FDK+A++L LGYPG
Sbjct: 119 RLETG-LAFPPVALLVSGGHTQLIAVRGIGRYEVLGETLDDAAGEAFDKVARLLGLGYPG 177
Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKE--KANI 238
GP I +++ GDP+ ++FPRPM+ N +FSFSGLKT+VL ++K +K E K +I
Sbjct: 178 GPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDI 237
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
A F +A+ D+L K ALK+TG +LV+ GGV AN +LR+ L + K+ V+ P
Sbjct: 238 AASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL 297
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
E CTDN AMIA+AG +R + S + N++P+W+++++
Sbjct: 298 ELCTDNAAMIAYAGLLRYKAGR-FISPLDVNVRPRWRLDEV 337
>gnl|CDD|129429 TIGR00329, gcp_kae1, metallohydrolase, glycoprotease/Kae1 family.
This subfamily includes the well-studied secreted
O-sialoglycoprotein endopeptidase (glycoprotease, EC
3.4.24.57) of Pasteurella haemolytica, a pathogen. A
member from Riemerella anatipestifer, associated with
cohemolysin activity, likewise is exported without
benefit of a classical signal peptide and shows
glycoprotease activity on the test substrate
glycophorin. However, archaeal members of this subfamily
show unrelated activities as demonstrated in Pyrococcus
abyssi: DNA binding, iron binding, apurinic endonuclease
activity, genomic association with a kinase domain, and
no glycoprotease activity. This family thus pulls
together a set of proteins as a homology group that
appears to be near-universal in life, yet heterogeneous
in assayed function between bacteria and archaea
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 305
Score = 372 bits (958), Expect = e-130
Identities = 158/306 (51%), Positives = 216/306 (70%), Gaps = 1/306 (0%)
Query: 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKL 63
LGIE+SCDD+G+A+ D N+ +++ SQ +H +YGGVVPE A+R H + I PLL +
Sbjct: 1 LGIETSCDDTGVAIVDEE-GNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERA 59
Query: 64 LKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLS 123
L SN++ +ID+IAYT+GPGL GSL VG++ A S+ALS++KP+IG+NHL GH+ +P L
Sbjct: 60 LIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPLIGVNHLLGHIYAPRLD 119
Query: 124 NNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPE 183
N L FPF++LLVSGGHTQ+I V IG+Y +LGETLDDA G+ FDK+A++L LGYPGGP+
Sbjct: 120 TNILQFPFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAVGEAFDKVARLLGLGYPGGPK 179
Query: 184 ISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFL 243
I +++ GD + FP P +FSFSGLKT+ L I+ +K + + K +IA F
Sbjct: 180 IEELAKKGDKLPFYFPLPYTVKPMLDFSFSGLKTAALRKIEKLKKNLNEATKEDIAYSFQ 239
Query: 244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTD 303
+ D L K ALK+TG +LV+VGGV ANK+LR+ L L ++ N +YP EFC+D
Sbjct: 240 ETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPLEFCSD 299
Query: 304 NGAMIA 309
NGAMIA
Sbjct: 300 NGAMIA 305
>gnl|CDD|216132 pfam00814, Peptidase_M22, Glycoprotease family. The Peptidase M22
proteins are part of the HSP70-actin superfamily. The
region represented here is an insert into the fold and
is not found in the rest of the family (beyond the
Peptidase M22 family). Included in this family are the
Rhizobial NodU proteins and the HypF regulator. This
region also contains the histidine dyad believed to
coordinate the metal ion and hence provide catalytic
activity. Interestingly the histidines are not well
conserved, and there is a lack of experimental evidence
to support peptidase activity as a general property of
this family. There also appear to be instances of this
domain outside of the HSP70-actin superfamily.
Length = 271
Score = 314 bits (806), Expect = e-107
Identities = 133/287 (46%), Positives = 186/287 (64%), Gaps = 16/287 (5%)
Query: 24 NLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP 83
+ ++VI SQ +H YGGVVPELA+R H + ++PL+ + L + L L+ +D IA T GP
Sbjct: 1 EILANVILSQKDLHAPYGGVVPELASRHHSERLLPLIEEALAEAGLSLEDLDAIAVTAGP 60
Query: 84 GLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQL 143
GL L VG++ A +AL+++KP++G+NHLE H L+ L L FP + LLVSGGHTQ+
Sbjct: 61 GLFTGLRVGATFAKGLALALDKPLVGVNHLEAHALAARLETG-LEFP-VVLLVSGGHTQV 118
Query: 144 IKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPML 203
G Y +LGETLDDAAG+ FDK+A++L L YPGGP I +++ G ++FPRP
Sbjct: 119 YAAKD-GRYEILGETLDDAAGEAFDKVARLLGLPYPGGPAIEKLAKEGA---FEFPRPK- 173
Query: 204 YTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGI 263
+FSFSGLKT+VL +I+ K+ K +IA F +A+ D L K ALK G
Sbjct: 174 ---GMDFSFSGLKTAVLRLIEK------KEPKEDIAASFQEAVFDHLAEKTERALKLPGA 224
Query: 264 NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310
+LV++GGV ANK+LR+ L + + +F P E+CTDNGAMIA+
Sbjct: 225 KELVILGGVAANKRLREALTEMAVETGVKLFAPPLEYCTDNGAMIAW 271
>gnl|CDD|234329 TIGR03722, arch_KAE1, universal archaeal protein Kae1. This family
represents the archaeal protein Kae1. Its partner Bud32
is fused with it in about half of the known archaeal
genomes. The pair, which appears universal in the
archaea, corresponds to EKC/KEOPS complex in eukaryotes.
A recent characterization of the member from Pyrococcus
abyssi, as an iron-binding, atypical DNA-binding protein
with an apurinic lyase activity, challenges the common
annotation of close homologs as O-sialoglycoprotein
endopeptidase. The latter annotation is based on a
characterized protein from the bacterium Pasteurella
haemolytica [DNA metabolism, DNA replication,
recombination, and repair].
Length = 322
Score = 200 bits (510), Expect = 5e-62
Identities = 106/346 (30%), Positives = 177/346 (51%), Gaps = 38/346 (10%)
Query: 4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKL 63
LGIE + G+ + D+ + L S V ++ GG+ P AA H + L+ +
Sbjct: 1 LGIEGTAHTFGVGIVDSDGEIL---ANVSDTYVPEK-GGIHPREAAEHHAEVAPKLIKEA 56
Query: 64 LKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLS 123
L+ + + ++ ID +A+++GPGL L VG++ A ++AL +NKP++G+NH H +
Sbjct: 57 LEEAGISIEDIDAVAFSQGPGLGPCLRVGATAARALALKLNKPLVGVNHCVAH-----IE 111
Query: 124 NNSLTFPF---IALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
LT + L VSGG+TQ+I + G Y + GETLD G+ DK A+ + LG+PG
Sbjct: 112 IGRLTTGAKDPVVLYVSGGNTQVIAYRN-GRYRVFGETLDIGLGNALDKFAREVGLGHPG 170
Query: 181 GPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA 239
GP+I ++E G K + YT + SFSGL T+ L K ++
Sbjct: 171 GPKIEELAEKG-----KEYIELPYTVKGMDLSFSGLLTAALRAYK------KGARLEDVC 219
Query: 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
+ +L AL +TG ++++VGGV AN++LR+ L ++ + + P E
Sbjct: 220 YSLQETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPE 279
Query: 300 FCTDNGAMIAFAGAMRIENNYKS------ESNYEFNIKPQWKINKI 339
+ DNGAMIA+ G + YK E + ++ +W+ +++
Sbjct: 280 YAGDNGAMIAYTGLL----MYKHGVTIPVEESR---VRQRWRTDEV 318
>gnl|CDD|184878 PRK14878, PRK14878, UGMP family protein; Provisional.
Length = 323
Score = 185 bits (472), Expect = 2e-56
Identities = 105/342 (30%), Positives = 173/342 (50%), Gaps = 31/342 (9%)
Query: 4 LGIESSCDDSGLAL--YDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLS 61
LGIES+ G+ + D + N+R + E GG+ P AA+ H + LL
Sbjct: 1 LGIESTAHTLGVGIVKEDKVLANVRDTYV-------PEKGGIHPREAAQHHAEVAPELLR 53
Query: 62 KLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPF 121
K L+ + + ++ ID +A ++GPGL +L VG++ A ++AL NKP++ +NH H
Sbjct: 54 KALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKPLVPVNHCIAH----- 108
Query: 122 LSNNSLTFPF---IALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGY 178
+ LT + L VSGG+TQ + G Y + GETLD A G+ D A+ + L
Sbjct: 109 IEIGRLTTGAKDPVVLYVSGGNTQ-VLAFRGGRYRVFGETLDIAIGNALDTFAREVGLAP 167
Query: 179 PGGPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKEKAN 237
PGGP I +E G+ + P Y + SFSGL T+ L +L K+ +
Sbjct: 168 PGGPAIEKCAEKGE-KYIELP----YVVKGQDLSFSGLLTAAL------RLYKGKERLED 216
Query: 238 IARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297
+ + +L AL +TG ++++VGGV AN++LR+KL I+ + +
Sbjct: 217 VCYSLRETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVP 276
Query: 298 KEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
E+ DNGAMIA+ G + ++ F ++ +W+++++
Sbjct: 277 PEYAGDNGAMIAYTGLLAYKHGVTIPPEESF-VRQRWRLDEV 317
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 189 bits (482), Expect = 1e-55
Identities = 101/324 (31%), Positives = 167/324 (51%), Gaps = 29/324 (8%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
MI+LGIE + + + D+ L S GG+ P AA H + I ++
Sbjct: 1 MIVLGIEGTAWKTSAGIVDSDGDVL---FNESDPYK-PPSGGIHPREAAEHHAEAIPKVI 56
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGH---- 116
+ L+ + L+ + ID++A+++GPGL L V ++ A ++ALS++ P+IG+NH H
Sbjct: 57 KEALEEAGLKPEDIDLVAFSQGPGLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIG 116
Query: 117 -LLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLD 175
L + P + L VSGG+TQ++ + G Y + GETLD G+ DK A+ +
Sbjct: 117 RLTTGAED------P-VTLYVSGGNTQVLAYLN-GRYRVFGETLDIGVGNALDKFARHVG 168
Query: 176 LGYPGGPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKE 234
L +PGGP+I +++ G I P Y +FSFSGL T+ D+ +
Sbjct: 169 LPHPGGPKIEKLAKDGKKYI-DLP----YVVKGMDFSFSGLLTAAKR-----AYDA-GEP 217
Query: 235 KANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVF 294
++ + +LT AL +TG +++++VGGV AN +LR+ L + ++ +
Sbjct: 218 LEDVCYSLQETAFAMLTEVTERALAHTGKDEVLLVGGVAANNRLREMLKEMCEERGADFY 277
Query: 295 YPKKEFCTDNGAMIAFAGAMRIEN 318
P+ FC DNGAMIA+ G + +
Sbjct: 278 VPEPRFCGDNGAMIAWLGLLMYKA 301
>gnl|CDD|240369 PTZ00340, PTZ00340, O-sialoglycoprotein endopeptidase-like protein;
Provisional.
Length = 345
Score = 149 bits (379), Expect = 2e-42
Identities = 93/330 (28%), Positives = 167/330 (50%), Gaps = 31/330 (9%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYG----GVVPELAARTHIQTI 56
+ LGIE S + G+ + I S N+ G +P A+ H + I
Sbjct: 1 FLALGIEGSANKLGVGIVT------SDGEILS-NVRETYITPPGTGFLPRETAQHHREHI 53
Query: 57 IPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGH 116
+ L+ + L+ + + I +I YT+GPG+ L VG+ +A +++L KP++G+NH H
Sbjct: 54 LSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAH 113
Query: 117 L-LSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLD 175
+ + ++ P + L VSGG+TQ+I S Y + GET+D A G+ D+ A++L+
Sbjct: 114 IEMGRLVT--GAENP-VVLYVSGGNTQVIAY-SEHRYRIFGETIDIAVGNCLDRFARLLN 169
Query: 176 L-GYPG-GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIK-LDSLK 232
L P G I +++ G N+ + P + SFSG+ T + +++++ + D +
Sbjct: 170 LSNDPAPGYNIEQLAKKGK-NLIELPYV---VKGMDMSFSGILTYIEDLVEHPQFKDVVS 225
Query: 233 KEKANIARGFLDAIIDVL---TFKCIA-----ALKNTGINKLVVVGGVGANKQLRKKLNI 284
+ F D + L F + A+ + G N++++VGGVG N +L++ +
Sbjct: 226 EIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQ 285
Query: 285 LKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314
+ K+ +F + +C DNGAMIA+AG +
Sbjct: 286 MAKERGGKLFAMDERYCIDNGAMIAYAGLL 315
>gnl|CDD|234332 TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification
protein YeaZ. This family describes a protein family,
YeaZ, now associated with the threonylcarbamoyl
adenosine (t6A) tRNA modification. Members of this
family may occur as fusions with ygjD (previously gcp)
or the ribosomal protein N-acetyltransferase rimI, and
is frequently encoded next to rimI [Protein synthesis,
tRNA and rRNA base modification].
Length = 202
Score = 62.6 bits (153), Expect = 1e-11
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 23/115 (20%)
Query: 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSK 62
IL I++S + +AL D + + I E A R H + ++P++ +
Sbjct: 1 ILAIDTSTEALSVALLDD--GEILAERI---------------EEAGRNHSEILLPMIEE 43
Query: 63 LLKNSNLELKKIDIIAYTRGPGLPGS---LLVGSSIACSIALSINKPVIGINHLE 114
LL + L L+ +D IA G PGS L +G + A +AL++ P++G++ LE
Sbjct: 44 LLAEAGLSLQDLDAIAVGVG---PGSFTGLRIGLATAKGLALALGIPLVGVSSLE 95
>gnl|CDD|224135 COG1214, COG1214, Inactive homolog of metal-dependent proteases,
putative molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 60.9 bits (148), Expect = 6e-11
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
M IL I++S +ALY + + E R H + ++P++
Sbjct: 1 MKILAIDTSTSALSVALYLADDGKVLAEHT---------------EKLKRNHAERLMPMI 45
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLE 114
+LLK + L L+ +D IA +GPG L +G + A +AL++N P++G++ LE
Sbjct: 46 DELLKEAGLSLQDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSSLE 99
>gnl|CDD|223146 COG0068, HypF, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 750
Score = 56.6 bits (137), Expect = 8e-09
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 21/165 (12%)
Query: 163 AGDTFDKIAKMLDL----GYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTS 218
G FD +A +L + Y G ++L + D + ++ +
Sbjct: 597 IGRVFDAVAALLGICETRTYEGEAAMALEA-LADQSD---------GVDYPYEIKNEDNQ 646
Query: 219 VL---NVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGAN 275
VL +I + D LK E IA F +A+ + + K GINK+V+ GGV N
Sbjct: 647 VLDLKELILGVLEDLLKDEPEKIATKFHNALAEGFAELAVELAKKYGINKVVLSGGVFQN 706
Query: 276 KQLRKKL-NILKKQYNYTVFYPKKEFCTDNGAMI--AFAGAMRIE 317
+ L ++L LKK+ + + ++ D G + A A A+ +
Sbjct: 707 RLLLERLAKYLKKE-GFRFLFHQEVPAGDGGISLGQAVAAALELI 750
>gnl|CDD|232844 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF. A
previously described regulatory effect of HypF
mutatation is attributable to loss of activity of a
regulatory hydrogenase. A zinc finger-like region
CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported
the regulatory hypothesis. However, more recent work
(PUBMED:11375153) shows the direct effect is on the
activity of expressed hydrogenases with nickel/iron
centers, rather than on expression [Protein fate,
Protein modification and repair].
Length = 711
Score = 39.0 bits (91), Expect = 0.003
Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 15/149 (10%)
Query: 164 GDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVI 223
G FD +A L L + G+ I + N+ F +K VL+ +
Sbjct: 564 GRLFDAVAAALGL-------CGERTYEGEAAIALEALALRSDGIANYPFE-IKNKVLD-L 614
Query: 224 KNIKLDSLKK-----EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQL 278
K L+ +++ IA + L A GI+K+V+ GGV N+ L
Sbjct: 615 KEFYQRFLEDLLVGEDRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLL 674
Query: 279 RKKLNILKKQYNYTVFYPKKEFCTDNGAM 307
++L K + + + +G +
Sbjct: 675 LERLAKYLKGLGFQFLFH-RHLPPGDGGI 702
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 36.1 bits (84), Expect = 0.021
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 205 TNNFNFSFSG-LKTSVLNVIKNIKLDSLKKEKANIARGF---LDAIIDVLTFKCIAALKN 260
N+ N G L S + + I+ LK ++ F ++ IID++ + A K
Sbjct: 293 DNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKG 352
Query: 261 TGINKLVVVGGVGANKQLRKKL 282
+ + +VGG G + LR +L
Sbjct: 353 DKVKYIFLVGGFGESPYLRSRL 374
>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase.
Length = 897
Score = 32.9 bits (75), Expect = 0.31
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 169 KIAKMLDLGYPGGPEISLI-SEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVL 220
K+ +++ G ++ + +EFG P +FPR +NNF+FS + + +L
Sbjct: 716 KMIRLITFTLGGSAYLNFMGNEFGHPERVEFPRA---SNNFSFSLANRRWDLL 765
>gnl|CDD|222108 pfam13407, Peripla_BP_4, Periplasmic binding protein domain. This
domain is found in a variety of bacterial periplasmic
binding proteins.
Length = 258
Score = 32.3 bits (74), Expect = 0.31
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 243 LDAII---DVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296
+D +I D + AL+ G+ VVV G A + + I + TV
Sbjct: 184 IDGVISPNDGMAGGAAQALEAAGLAGKVVVVGFDATPEALQ--AIKDGTIDATVLQD 238
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved in
a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 30.7 bits (70), Expect = 0.35
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 275 NKQLRKKLNILKKQYNYTVFYPKKE 299
K L+++L+ + NY +++PK E
Sbjct: 84 IKDLKEQLSKAEVDLNYVIYFPKTE 108
>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding.
Length = 182
Score = 30.4 bits (69), Expect = 0.82
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 240 RGFLDAIIDV---------LTFKCIAALKNTGINKLVVVGGVGA 274
G DA++D + A G+ ++VVV G
Sbjct: 58 AGV-DAVVDAFGARPDDSDGVKHLLDAAARAGVRRIVVVSAAGL 100
>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka
flavin reductase)-like proteins; atypical (a) SDRs.
Human BVR-B catalyzes pyridine nucleotide-dependent
production of bilirubin-IX beta during fetal
development; in the adult BVR-B has flavin and ferric
reductase activities. Human BVR-B catalyzes the
reduction of FMN, FAD, and riboflavin. Recognition of
flavin occurs mostly by hydrophobic interactions,
accounting for the broad substrate specificity. Atypical
SDRs are distinct from classical SDRs. BVR-B does not
share the key catalytic triad, or conserved tyrosine
typical of SDRs. The glycine-rich NADP-binding motif of
BVR-B is GXXGXXG, which is similar but not identical to
the pattern seen in extended SDRs. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Atypical SDRs include
biliverdin IX beta reductase (BVR-B,aka flavin
reductase), NMRa (a negative transcriptional regulator
of various fungi), progesterone 5-beta-reductase like
proteins, phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 207
Score = 29.9 bits (68), Expect = 1.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 255 IAALKNTGINKLVVVGGVG 273
++A+K G+ +L+VVGG G
Sbjct: 90 VSAMKAAGVKRLIVVGGAG 108
>gnl|CDD|233021 TIGR00555, panK_eukar, pantothenate kinase,
eukaryotic/staphyloccocal type. This model describes a
eukaryotic form of pantothenate kinase, characterized
from the fungus Aspergillus nidulans and with similar
forms known in several other eukaryotes. It also
includes forms from several Gram-positive bacteria
suggested to have originated from the eukaryotic form by
lateral transfer. It differs in a number of biochemical
properties (such as inhibition by acetyl-CoA) from most
bacterial CoaA and lacks sequence similarity. This
enzyme is the key regulatory step in the biosynthesis of
coenzyme A (CoA) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Pantothenate and coenzyme A].
Length = 296
Score = 29.3 bits (66), Expect = 2.8
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 221 NVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRK 280
V+ S E +IA L I + + I+++V +G N QL
Sbjct: 208 KVLSKHLDQSFSPE--DIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLM 265
Query: 281 KLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314
K+ T F+ KK ++ ++GA+
Sbjct: 266 KV-----LSYATNFWSKKALFLEHE---GYSGAI 291
>gnl|CDD|88554 cd05175, PI3Kc_IA_alpha, Phosphoinositide 3-kinase (PI3K), class
IA, alpha isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma). Class
IA enzymes contain an N-terminal p85 binding domain, a
Ras binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. They associate with a
regulatory subunit of the p85 family and are activated
by tyrosine kinase receptors. PI3Kalpha plays an
important role in insulin signaling. It also mediates
physiologic heart growth and provides protection from
stress. Activating mutations of PI3Kalpha is associated
with diverse forms of cancer at high frequency.
Length = 366
Score = 28.9 bits (64), Expect = 3.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 33 QNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR 81
Q + +K Y LA R H I L S +L + EL+ D IAY R
Sbjct: 283 QEMCYKAY------LAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIR 325
>gnl|CDD|163652 cd07409, MPP_CD73_N, CD73 ecto-5'-nucleotidase and related
proteins, N-terminal metallophosphatase domain. CD73 is
a mammalian ecto-5'-nucleotidase expressed in
endothelial cells and lymphocytes that catalyzes the
conversion of 5'-AMP to adenosine in the final step of a
pathway that generates adenosine from ATP. This pathway
also includes a CD39 nucleoside triphosphate
dephosphorylase that mediates the dephosphorylation of
ATP to ADP and then to 5'-AMP. These enzymes all have
an N-terminal metallophosphatase domain and a C-terminal
5'nucleotidase domain. The N-terminal
metallophosphatase domain belongs to a large superfamily
of distantly related metallophosphatases (MPPs) that
includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA
lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 281
Score = 28.7 bits (65), Expect = 4.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 242 FLDAIIDVLTFKCIAALKNTGINKLVVVGGVGAN--KQLRKKLN 283
FLD I K LK G+NK++ + G K++ +K+
Sbjct: 164 FLDEIEAAQ--KEADKLKAQGVNKIIALSHSGYEVDKEIARKVP 205
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 28.9 bits (65), Expect = 4.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 253 KCIAALKNTGINKLVVVGGVGA 274
K I LK GI+ LVV+GG G+
Sbjct: 83 KAIEQLKKHGIDALVVIGGDGS 104
>gnl|CDD|219213 pfam06878, Pkip-1, Pkip-1 protein. This family consists of several
Pkip-1 proteins which seem to be specific to
Nucleopolyhedroviruses. The function of this family is
unknown although it has been found that Pkip-1 is not
essential for virus replication in cell culture or by in
vivo intrahaemocoelic injection.
Length = 163
Score = 27.7 bits (62), Expect = 5.7
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 276 KQLRKKLNILKKQYNYTVF-YPKKEFCTDNGA 306
K+LR K N L+KQY+ V Y KK +N A
Sbjct: 4 KKLRAKENNLRKQYDNKVKKYLKKPSKDENLA 35
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 28.5 bits (64), Expect = 5.9
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 225 NIKLDSLKKEKANIARGFLDAIIDVLT--FKCIAALKNTGINKLVVVGGVGANKQLRKKL 282
+L +A++AR L+ + L + + L +++ VVGG + + L
Sbjct: 362 GFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQIL 421
Query: 283 -NILKKQYNYTVFYPK-KEFCTDNGAMIAFAGAMRIENNYKSESN 325
+ L V P+ +E GA +A A I ++ +
Sbjct: 422 ADAL----GLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALK 462
>gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function
prediction only].
Length = 211
Score = 27.7 bits (62), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 255 IAALKNTGINKLVVVGGVG 273
I ALK G+ +L+VVGG G
Sbjct: 89 IEALKGAGVPRLLVVGGAG 107
>gnl|CDD|226672 COG4219, MecR1, Antirepressor regulating drug resistance, predicted
signal transduction N-terminal membrane component
[Transcription / Signal transduction mechanisms].
Length = 337
Score = 28.3 bits (63), Expect = 6.9
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
I + E +CD + LA + + Y + +L +
Sbjct: 231 KIRIDQEIACDAAVLARINPEE--------------RRTYAESILKLLLAFSNPPLACH- 275
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIG 109
N L+ + I I R L+ G+ A +A+ + G
Sbjct: 276 WPAGGNKPLKERLIMIKEPDRKKQSRRRLIAGAITALVVAILGAGFLWG 324
>gnl|CDD|205229 pfam13048, DUF3908, Protein of unknown function (DUF3908). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and viruses.
Proteins in this family are approximately 140 amino
acids in length. There is a single completely conserved
residue Y that may be functionally important.
Length = 125
Score = 27.0 bits (60), Expect = 7.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 277 QLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310
+L KK+ L + N V YPK F + +
Sbjct: 24 ELLKKVKELLDEKNIKVIYPKNLFNDNKKLELII 57
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 27.6 bits (62), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 253 KCIAALKNTGINKLVVVGGVGAN 275
K LK GI+ LVV+GG G+
Sbjct: 83 KAAENLKKHGIDALVVIGGDGSY 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.403
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,492,396
Number of extensions: 1739818
Number of successful extensions: 1723
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1688
Number of HSP's successfully gapped: 56
Length of query: 339
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 241
Effective length of database: 6,590,910
Effective search space: 1588409310
Effective search space used: 1588409310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)