RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9394
(339 letters)
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn
dependent nucleotide phosphatase, metalloprotease,
hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus
abyssi} PDB: 2ivo_A 2ivp_A*
Length = 330
Score = 430 bits (1107), Expect = e-152
Identities = 102/334 (30%), Positives = 171/334 (51%), Gaps = 19/334 (5%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
M+ LGIE + G+ + + ++V + E GG+ P+ AA H + + PLL
Sbjct: 1 MLALGIEGTAHTLGIGIVSE--DKVLANVFDTL---TTEKGGIHPKEAAEHHARLMKPLL 55
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
K L + + L ID+IA+++GPGL +L V ++ A ++A+ KP++G+NH H+
Sbjct: 56 RKALSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEIT 115
Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
+ + P + L VSGG+TQ++ + G Y + GETLD G+ D A+ L LG+PG
Sbjct: 116 KMF--GVKDP-VGLYVSGGNTQVLALEG-GRYRVFGETLDIGIGNAIDVFARELGLGFPG 171
Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
GP++ ++E G+ + P + + SFSGL T + ++ K ++A
Sbjct: 172 GPKVEKLAEKGEK-YIELPYAV---KGMDLSFSGLLTEAIRKYRSGKYR-----VEDLAY 222
Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
F + L A+ +T +++V+VGGV AN +LR+ L I+ + F P +
Sbjct: 223 SFQETAFAALVEVTERAVAHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDL 282
Query: 301 CTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQW 334
C DNGAMIA+ G + E +K ++
Sbjct: 283 CRDNGAMIAYTGLRMYKAGISF-RLEETIVKQKF 315
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum}
Length = 334
Score = 421 bits (1085), Expect = e-149
Identities = 94/337 (27%), Positives = 170/337 (50%), Gaps = 21/337 (6%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQ-NLVHKEYGGVVPELAARTHIQTIIPL 59
MI+LG+E + + D S ++ + ++ + GG+ P AA H + I +
Sbjct: 6 MIVLGLEGTAHTISCGIIDE------SRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTV 59
Query: 60 LSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLS 119
+S+ L+ + + + ID+I ++ GPGL SL V ++ A +I++ KP+IG+NH GH+
Sbjct: 60 ISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEI 119
Query: 120 PFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYP 179
+ + L VSGG+TQ+I G Y +LGETLD G+ DK A+ + +P
Sbjct: 120 GRRVTGA--IDPVMLYVSGGNTQVIAH-VNGRYRVLGETLDIGIGNMIDKFAREAGIPFP 176
Query: 180 GGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA 239
GGPEI ++ G + P + + +FSG+ T+ L +K + +I+
Sbjct: 177 GGPEIEKLAMKGTK-LLDLPYSV---KGMDTAFSGILTAALQYLKT------GQAIEDIS 226
Query: 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
+ +L AL +G +++++ GGV N++LR + + ++ + +E
Sbjct: 227 YSIQETAFAMLVEVLERALYVSGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDRE 286
Query: 300 FCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKI 336
+C DNG MIA A + ++ + S E + P+++I
Sbjct: 287 YCMDNGIMIAQAALLMYKSGVRM-SVEETAVNPRFRI 322
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 419 bits (1078), Expect = e-145
Identities = 100/336 (29%), Positives = 171/336 (50%), Gaps = 20/336 (5%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
MI LG+E + + +G+ + + + + + G+ P AA H +T L+
Sbjct: 6 MICLGLEGTAEKTGVGIVTSD-GEVLFN---KTIMYKPPKQGINPREAADHHAETFPKLI 61
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
+ + + +ID+IA+++GPGL SL V +++A +++L++ KP+IG+NH H+
Sbjct: 62 KEAFEVVDKN--EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIG 119
Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
L+ P + L VSGG+TQ+I S Y + GETLD A G+ D+ A+ ++L +PG
Sbjct: 120 KLTTE-AEDP-LTLYVSGGNTQVIAYVS-KKYRVFGETLDIAVGNCLDQFARYVNLPHPG 176
Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
GP I ++ G + P + + +FSGL T+ + + +I
Sbjct: 177 GPYIEELARKGKK-LVDLPYTV---KGMDIAFSGLLTAAMRAYDA------GERLEDICY 226
Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
+ +LT AL +T ++++VGGV AN +LR+ L + + N + P KEF
Sbjct: 227 SLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEF 286
Query: 301 CTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKI 336
C DNGAMIA+ G + +N + E I P ++
Sbjct: 287 CGDNGAMIAWLGLLMHKNGRWMSLD-ETKIIPNYRT 321
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF,
actin-like-fold, glycoprotease, chaperone; 2.05A
{Salmonella typhimurium} PDB: 2gem_A 1okj_A
Length = 231
Score = 73.2 bits (180), Expect = 2e-15
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 24/117 (20%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVP---ELAARTHIQTII 57
M IL I+++ + +AL++ G + EL R H Q I+
Sbjct: 1 MRILAIDTATEACSVALWN---------------------NGTINAHFELCPREHTQRIL 39
Query: 58 PLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLE 114
P++ ++L S L +ID +A+ RGPG + +G IA +AL N P+IG++ L
Sbjct: 40 PMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLA 96
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70
nucleotide-binding fold, bacterial resuscitation BUT
non-culturable state, Y YJEE; 3.10A {Vibrio
parahaemolyticus}
Length = 213
Score = 71.6 bits (176), Expect = 7e-15
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 24/117 (20%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
IL I+++ ++ +AL + ++ + E+A R H + ++P++
Sbjct: 2 AKILAIDTATENCSVALLV------------NDQVISRS------EVAPRDHTKKVLPMV 43
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGS---LLVGSSIACSIALSINKPVIGINHLE 114
++LK + L L+ +D +A+ RG PGS + +G IA +A P+IG++ L
Sbjct: 44 DEVLKEAGLTLQDLDALAFGRG---PGSFTGVRIGIGIAQGLAFGAELPMIGVSTLA 97
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural
genomics, JOI for structural genomics, JCSG; 2.50A
{Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Length = 218
Score = 68.2 bits (167), Expect = 1e-13
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 25/117 (21%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
M +L +++S + L ++L + H + + ++
Sbjct: 13 MNVLALDTS-QRIRIGLRK------------GEDLFEIS------YTGEKKHAEILPVVV 53
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGS---LLVGSSIACSIALSINKPVIGINHLE 114
KLL +L++K +D++ G PG L VG + + + PV +N E
Sbjct: 54 KKLLDELDLKVKDLDVVGVGIG---PGGLTGLRVGIATVVGLVSPYDIPVAPLNSFE 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 2e-11
Identities = 51/301 (16%), Positives = 92/301 (30%), Gaps = 132/301 (43%)
Query: 33 QNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKK-----IDIIAYTRGPG-LP 86
++L ++ Y +V +L I+ LS+L++ + L+ +K ++I+ + P P
Sbjct: 174 RDL-YQTYHVLVGDL-----IKFSAETLSELIR-TTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 87 GSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKV 146
+ +LLS +S P I + QL
Sbjct: 227 D--------------------------KDYLLSIPIS-----CPLIGV------IQL--- 246
Query: 147 NSIGNYFLLGETLDD-------------------------AAGDT---FDKIA-KMLDL- 176
+Y + + L A D+ F K + +
Sbjct: 247 ---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 177 ---G------YPG-GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNI 226
G YP S++ + + N P PML I N+
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNE-GVPSPML------------------SISNL 344
Query: 227 KLDSLKK--EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGG-----VGANKQLR 279
+ ++ K N + +++ +L N N +VV G G N LR
Sbjct: 345 TQEQVQDYVNKTN-SHLPAGKQVEI-------SLVNGAKN--LVVSGPPQSLYGLNLTLR 394
Query: 280 K 280
K
Sbjct: 395 K 395
Score = 31.9 bits (72), Expect = 0.34
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 22/72 (30%)
Query: 28 HVICSQNLVHKEYGGVVPELA---ARTHIQTII-------PLLSKLLKNSNLELKKIDII 77
+ + V K G +V E+ + Q + ++ +L ++L+KIDII
Sbjct: 1827 QYVVER--VGKRTGWLV-EIVNYNVE-NQQYVAAGDLRALDTVTNVLNF--IKLQKIDII 1880
Query: 78 AYTRGPGLPGSL 89
L SL
Sbjct: 1881 E------LQKSL 1886
Score = 31.6 bits (71), Expect = 0.41
Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 62/181 (34%)
Query: 161 DAAGDTFDKIAKML--DLGYP------GGPEISLISEFGDPN---IYKFPRPMLYTNNFN 209
AA D +++ G+ P ++L FG I + M++ +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNP-VNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 210 FSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLD-------AI--IDVLTFKCIAALKN 260
K + K I + +G L A+ ++ F+ LK+
Sbjct: 1699 GKLKTEK-----IFKEIN-EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE---DLKS 1749
Query: 261 TG-INKLVVVGG--VGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIE 317
G I G +G E+ A+ + A M IE
Sbjct: 1750 KGLIPADATFAGHSLG-------------------------EYA----ALASLADVMSIE 1780
Query: 318 N 318
+
Sbjct: 1781 S 1781
Score = 31.2 bits (70), Expect = 0.64
Identities = 40/226 (17%), Positives = 56/226 (24%), Gaps = 100/226 (44%)
Query: 62 KLLKNSNLELKKIDIIAYTRGP-GL--------PGSLLVGSSIACSIALSINKPVIGINH 112
K+ K N R GL P L+ A
Sbjct: 1705 KIFKEINEHSTSYTF----RSEKGLLSATQFTQPALTLM------EKAA--------FED 1746
Query: 113 LEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGE-----------TLDD 161
L+ L P + A GH S LGE +++
Sbjct: 1747 LKSKGLIPADA-------TFA-----GH-------S------LGEYAALASLADVMSIES 1781
Query: 162 AA------GDTFDKIAKMLDLGY---------PGGPEISLISEFGDPNIYKFPRPMLYTN 206
G T +LG PG S E + + + T
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR---TG 1838
Query: 207 ------NFNFS-----FSGLK------TSVLNVIK--NIKLDSLKK 233
N+N +G T+VLN IK I + L+K
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
Score = 28.1 bits (62), Expect = 5.9
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 14/62 (22%)
Query: 238 IARGFLDAIIDVLTFKCIAALKNTG----I------NKLVVVGG-VGANKQLRKKLNILK 286
+A F + + K TG I N+ V G + A + LN +K
Sbjct: 1817 VAASFSQEALQYV---VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 287 KQ 288
Q
Sbjct: 1874 LQ 1875
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 50.2 bits (120), Expect = 6e-07
Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 19/178 (10%)
Query: 159 LDDAAGDTFDKIAKMLDL----GYPGGPEISLISE-FGDPNIYKFPRPMLYTNNFNFSFS 213
+ G FD +A ++ + + G + L S Y++ +L + +
Sbjct: 593 YVSSMGRFFDAVAALIGVRKEVLFEGQAAMELESLMAESEEYYEYE--ILKEDRYVIDPE 650
Query: 214 GLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVG 273
+ + EK+ I+ F + +++ K TGINK+V+ GG
Sbjct: 651 LILRQIYEDYMK------GFEKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSF 704
Query: 274 ANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF----AGAMRIENNYKSESNYE 327
N+ L ++L + V+ K C D G I+ +E + S +E
Sbjct: 705 QNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGG--ISLGQAVIANKILEGSAWSHPQFE 760
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 42.0 bits (99), Expect = 2e-04
Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 28/161 (17%)
Query: 162 AAGDTFDKIAKMLDLG-----YPGGPEISL--ISEFGDPNIYKFPRPMLYTNNFNFSFSG 214
+ G FD +A L Y G +L ++ D + + + +
Sbjct: 504 SCGRLFDAVAAALGCAPATLSYEGEAACALEALAASCDGVTHPVT---MPRVDNQLDLAT 560
Query: 215 LKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGA 274
LN + A F DA+ GI LV GGV
Sbjct: 561 FWQQWLN---------WQAPVNQRAWAFHDALAQGFAALMREQATMRGITTLVFSGGVIH 611
Query: 275 NKQLRKKL-NILKKQYNYTVFYPKKEFCTDNG-----AMIA 309
N+ LR +L + L ++T+ +P+ D G +IA
Sbjct: 612 NRLLRARLAHYLA---DFTLLFPQSLPAGDGGLSLGQGVIA 649
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 48/329 (14%), Positives = 95/329 (28%), Gaps = 89/329 (27%)
Query: 33 QNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVG 92
Q L+++ + P +R+ + I L ++ EL+++ + LLV
Sbjct: 203 QKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQA---ELRRL-----LKSKPYENCLLV- 249
Query: 93 SSIACSIALS-INKPVIGINHLEGH---LLSPFLSNNSLTFPFIALLVSGGHTQLIKVNS 148
L + N LL + + +S T I ++
Sbjct: 250 --------LLNVQNAKA-WNAFNLSCKILL---TTRFKQ----VTDFLSAATTTHISLDH 293
Query: 149 IGNYFLLGETLDDAAGDTFDKIAKM--LDLGYP-----GGP-EISLISEF--GDPNIYKF 198
E K DL P P +S+I+E +
Sbjct: 294 HSMTLTPDEVKS-----LLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWD- 345
Query: 199 PRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAII---DV-LTFKC 254
+ N + +I+ L+ L E A + F + +
Sbjct: 346 -----NWKHVNCD------KLTTIIE-SSLNVL--EPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 255 IAAL--KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP-----KKEFCTDNGAM 307
++ + + +VVV +L K + K+ T+ P K + A+
Sbjct: 392 LSLIWFDVIKSDVMVVV------NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 308 IAFAGAMRIENNYKSESNYEFN--IKPQW 334
I ++Y ++ + I P
Sbjct: 446 HR-----SIVDHYNIPKTFDSDDLIPPYL 469
Score = 37.5 bits (86), Expect = 0.007
Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 48/196 (24%)
Query: 150 GNYFLLGETLDDAAGDTFDK-IAKMLDLGYPGGPEISLISEFGDPN----IYKFPRPMLY 204
G L TL + K + ++L + Y + +E P+ +Y R LY
Sbjct: 63 GTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 205 TNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGIN 264
+N F+ K NV + L++ AL
Sbjct: 121 NDNQVFA----K---YNVSRLQPYLKLRQ-----------------------ALLELRPA 150
Query: 265 KLVVV-GGVGANKQ------LRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM--R 315
K V++ G +G+ K ++ + ++ +F+ + C ++ + +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 316 IENNYKSESNYEFNIK 331
I+ N+ S S++ NIK
Sbjct: 209 IDPNWTSRSDHSSNIK 224
Score = 27.5 bits (60), Expect = 8.3
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 19/104 (18%)
Query: 151 NYFL--LGETLDDA-AGDTFDKIAKM-LDL----------GYPGGPEISLISEFGDPNIY 196
YF +G L + + + LD S+++ Y
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 197 KFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
K Y + + + L ++L+ + I+ + + + ++ R
Sbjct: 531 K-----PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 32.3 bits (74), Expect = 0.17
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 259 KNTGINKLVVVGGVGANKQ---LRKKLNIL 285
+ G+ V+VGG+ + Q L KK +I+
Sbjct: 136 SSIGVQSAVIVGGIDSMSQSLALAKKPHII 165
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 30.5 bits (68), Expect = 0.53
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 244 DAIID-VLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCT 302
++ VL+ + L G +L++ G + + + Q + C
Sbjct: 42 PKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCG 101
Query: 303 DN 304
D
Sbjct: 102 DT 103
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 31.0 bits (70), Expect = 0.64
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 253 KCIAALKNTGINKLVVVGGVGANK 276
K + K +N ++++GG +N
Sbjct: 157 KALFVAKENNLNAIIIIGGDDSNT 180
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate
assisted catalysis, subst channeling, adenylation; HET:
TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A
3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A*
3vez_A*
Length = 576
Score = 31.0 bits (70), Expect = 0.69
Identities = 58/411 (14%), Positives = 96/411 (23%), Gaps = 99/411 (24%)
Query: 1 MIILGIESSCD---DSGLALYD-------------THIKNLRSHVICSQNLVHKEYGGVV 44
M +LG+ D+ AL T K+
Sbjct: 7 MRVLGLNGWPRDFHDASAALLVDGRIAAFAEEERLTRKKH---------------GYNTA 51
Query: 45 PELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR------------GPGLPGSLLVG 92
P AA L + L + +D +A+ P L
Sbjct: 52 PVQAAA-----------FCLAQAGLTVDDLDAVAFGWDLPAMYRERLGGWPHSDSEALDI 100
Query: 93 SSIACSIALSINKPVIGINHLEGH-----LLSPFLSNNSLTF--------PFIALLVSGG 139
+ P+ + H H S L +A GG
Sbjct: 101 LLPRDVFPRRTDPPLHFVQHHLAHAASAYYFSGEDRGAVLIVDGQGEEECVTLAH-AEGG 159
Query: 140 HTQLIK----VNSIGNYF-----LLGETLDD-------AA-GDTFDKIAKMLDLGYPGGP 182
++ S+G ++ G D+ AA G T D+ G
Sbjct: 160 KITVLDTVPGAWSLGFFYEHVSEYTGLGGDNPGKLMGLAAHGTTVDETLSAFAFDSDGYR 219
Query: 183 EISLISEFGDPNIYK--FPRPMLYTNNFNFSFSGLKTSVLNVIKNI------KLDSLKKE 234
+ + DP + + + + + E
Sbjct: 220 LNLIDPQARDPEDWDEYSVTERAWFAHLERIYRLPPNEFVRRYDPAKGRVVRDTRRDPYE 279
Query: 235 KANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVF 294
++A A+ + + L TG L V GGVG N + KL V
Sbjct: 280 YRDLAATAQAALERAVFGLADSVLARTGERTLFVAGGVGLNATMNGKLLTRSTVDKMFVP 339
Query: 295 YPKKEFCTDNGAMIAFA------GAMRIENNYKSESNYEFNIKPQWKINKI 339
+ GA A A A + ++ +
Sbjct: 340 PVASDIGVSLGAAAAVAVELGDRIAPMGDTAAWGPEFSPDQVRAALDRTGL 390
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU;
2.64A {Bacteroides thetaiotaomicron}
Length = 325
Score = 30.4 bits (69), Expect = 0.71
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 11/88 (12%)
Query: 243 LDAII---DVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLN-ILKKQYNYTVFYPKK 298
+DA+ D + A K G K ++ G+ A L +L + T YP
Sbjct: 189 IDAVYAHNDRIAPGAYQAAKMAGREKEMIFVGIDALPGKGNGLELVLDSVLDATFIYP-- 246
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNY 326
AM I
Sbjct: 247 -----TNGDKVLQLAMDILEKKPYPKET 269
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 30.6 bits (70), Expect = 0.87
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 312 GAMRIENNYKSESNYEFNIKPQWK 335
G M +++N NY N +
Sbjct: 386 GPMCMQDNQGGAPNYYPNSFGAPE 409
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.3
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 27/54 (50%)
Query: 54 QTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPV 107
Q + K L+ S LK Y S + AL+I +
Sbjct: 20 QAL-----KKLQAS---LKL-----YA-----DDS---------APALAIKATM 46
Score = 29.1 bits (64), Expect = 1.3
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 22 IKNLRSHVICSQNLVHKEYG-GVVPELAARTHIQ 54
+K L++ + K Y P LA + ++
Sbjct: 22 LKKLQASL--------KLYADDSAPALAIKATME 47
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 29.3 bits (66), Expect = 2.0
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 230 SLKKEKANIARGFLDAIIDVLTF---KCIAALKNTG--INKLVVVGGVGA-NKQLRKKL- 282
+L+ + I R L+A F + A G +++L GG+ N L +
Sbjct: 406 TLQTKPEEIYRALLEAT----AFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFA 461
Query: 283 NILKKQYNYTVFYPKKEFCTDNG-AMIAFAGAMRIENNYKS 322
++ N + + G AM A A Y S
Sbjct: 462 DVT----NREIKVAASKQTPALGAAMFASVAAGSEVGGYDS 498
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 29.1 bits (66), Expect = 2.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 312 GAMRIENNYKSESNYEFNIKP 332
G M + N+ SE Y N K
Sbjct: 374 GPMNVNGNFGSEPTYLANDKS 394
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
transfer, transferase; 1.53A {Streptomyces wedmorensis}
PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Length = 286
Score = 28.8 bits (64), Expect = 2.7
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 232 KKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKK 287
K E ++ + A L T ++V++ G GA + +
Sbjct: 38 KDEPGSLDDDAVTRFARN-----FARLAETYRGRMVLISGGGAFGHGAIRDHDSTH 88
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 28.4 bits (64), Expect = 2.8
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 259 KNTGINKLVVVGGVGANKQ---LRKKLNIL 285
+ +++GG + + L +NI+
Sbjct: 151 THHVHTYGLIMGGSNRSAEAQKLGNGINII 180
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein,
conformational changes, SUGA protein; 2.15A {Escherichia
coli} PDB: 3m9x_A* 3ma0_A*
Length = 313
Score = 28.4 bits (64), Expect = 3.2
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 35/154 (22%)
Query: 150 GNYFLL-GETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF 208
GNYFL+ G +D+ A K+L Y +I ++ + + + +
Sbjct: 124 GNYFLMGGSPVDNNAKLFRAGQMKVLK-PYVDSGKIKVVGDQ-------------WVDGW 169
Query: 209 NFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAII---DVLTFKCIAALKNTGINK 265
+ L +++N L + + +DA++ D I AL G++
Sbjct: 170 LP------ENALKIMENA-LTANNNK--------IDAVVASNDATAGGAIQALSAQGLSG 214
Query: 266 LVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
V + G A+ K I TV+ P
Sbjct: 215 KVAISGQDADLAGIK--RIAAGTQTMTVYKPITL 246
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.0 bits (63), Expect = 3.5
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 15/57 (26%)
Query: 255 IAALKNTGINKLVVVGGVGANKQLRKKLNILKKQY---------------NYTVFYP 296
+AA+K G++K+V K L+ Y P
Sbjct: 95 VAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMP 151
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 28.2 bits (63), Expect = 3.6
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 244 DAIIDVLTFK--------CIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFY 295
D + LT + IAA+K + +L+ V +G ++ K
Sbjct: 90 DIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLK 149
Query: 296 PKKE 299
P +
Sbjct: 150 PFRR 153
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 28.3 bits (64), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 312 GAMRIENNYKSESNYEFNIKPQWK 335
GAMR++ N+ S YE N + QW
Sbjct: 367 GAMRVDGNFGSTLGYEPNDQGQWA 390
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 27.7 bits (62), Expect = 4.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 255 IAALKNTGINKLVVVGGVGA 274
I +K G+N+ ++VGG G+
Sbjct: 96 IDGVKKAGVNRFLMVGGAGS 115
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC,
twin arginine translocation pathway signal P structural
genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Length = 332
Score = 27.8 bits (62), Expect = 4.9
Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 255 IAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314
I AL+ G+ + V G+ + I + +V + I + +
Sbjct: 213 IEALRAEGLAGQIPVTGMDGTQPGLV--AIKSGELVASVDWD-----PFWLGGIGLSMGL 265
Query: 315 RIENNYKSESNYEFNIKPQW 334
+ + + + + +
Sbjct: 266 QAKEKKIDLATLPKDRRESF 285
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 27.5 bits (62), Expect = 5.9
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 259 KNTGINKLVVVGGVGANKQLRK 280
+ V GG+ Q+ +
Sbjct: 81 RYMDTKVAEVYGGMPYKAQINR 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.403
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,160,907
Number of extensions: 316264
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 53
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)