RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9394
(339 letters)
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 145 bits (368), Expect = 6e-43
Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 14/196 (7%)
Query: 125 NSLTFPFIALLVS-GGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPE 183
L P+ LLV+ G ++ V S NY + T G TF + +L G E
Sbjct: 21 YCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTS--LGGGTFLGLCCLL-TGCETFEE 77
Query: 184 ISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNI---KLDSLKKEKANIAR 240
++ GD +Y ++ GL+ S + K K ++AR
Sbjct: 78 ALEMAAKGDSTNVDKLVKDIY--GGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLAR 135
Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQY----NYTVFYP 296
L I + + N I+++V VG + KL + +
Sbjct: 136 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFL 195
Query: 297 K-KEFCTDNGAMIAFA 311
+ + + GA++
Sbjct: 196 EHEGYFGAVGALLELF 211
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 93.0 bits (230), Expect = 2e-22
Identities = 42/310 (13%), Positives = 91/310 (29%), Gaps = 63/310 (20%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
+ LGI+ S + + +V K +A T +
Sbjct: 2 IYTLGIDVGSTASKCIILKDG-----------KEIVAKSL------VAVGTGTSGPARSI 44
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
S++L+N++++ + + T ++ L H +
Sbjct: 45 SEVLENAHMKKEDMAFTLATGYGRNS---------------LEGIADKQMSELSCHAMGA 89
Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKV-NSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYP 179
+ + G ++I V N F + + G D +A +L++
Sbjct: 90 SFIWP---NVHTVIDIGGQDVKVIHVENGTMTNFQMNDKCAAGTGRFLDVMANILEVKVS 146
Query: 180 GGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA 239
E+ S R + + F+ S + + + +K +I
Sbjct: 147 DLAELGAKST---------KRVAISSTCTVFAESEVISQLSK----------GTDKIDII 187
Query: 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
G ++ + + +V+ GGV N +R L++ +
Sbjct: 188 AGIHRSVASRVIGLANRV---GIVKDVVMTGGVAQNYGVRGA---LEEGLGVEIKTS--P 239
Query: 300 FCTDNGAMIA 309
NGA+ A
Sbjct: 240 LAQYNGALGA 249
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 83.5 bits (206), Expect = 1e-20
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSK 62
IL I+++ + +AL++ + +H EL R H Q I+P++
Sbjct: 2 ILAIDTATEACSVALWND--GTVNAHF----------------ELCPREHTQRILPMVQD 43
Query: 63 LLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFL 122
+L S L I+ +AY RGPG + +G IA +AL P+IG++ L +
Sbjct: 44 ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWR 103
Query: 123 SN 124
N
Sbjct: 104 KN 105
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga
maritima [TaxId: 2336]}
Length = 103
Score = 75.6 bits (186), Expect = 8e-18
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
M +L +++S + L ++L Y + H + + ++
Sbjct: 1 MNVLALDTS-QRIRIGLRK------------GEDLFEISY------TGEKKHAEILPVVV 41
Query: 61 SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLS 119
KLL +L++K +D++ GPG L VG + + + PV +N E S
Sbjct: 42 KKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKS 100
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW
{Staphylococcus aureus [TaxId: 1280]}
Length = 267
Score = 45.4 bits (106), Expect = 4e-06
Identities = 28/220 (12%), Positives = 59/220 (26%), Gaps = 6/220 (2%)
Query: 91 VGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIG 150
+ A IA +IN P + + + + T G
Sbjct: 49 LTGGNAGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTSLHYFDG 108
Query: 151 NYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNF 210
+ G + + +++ +++ GD N +Y +
Sbjct: 109 QSQRRVGGIGTGGGMIQGLGYLLSQITDYK--QLTDMAQHGDRNTIDLKVRHIYKDTE-- 164
Query: 211 SFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVG 270
+ N + +N + + +V+T I + +V +G
Sbjct: 165 PPIPGDLTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIG 224
Query: 271 G-VGANKQLRKKLNILKKQYNYTVFYPKK-EFCTDNGAMI 308
N LRK + +Y + F GA+
Sbjct: 225 SSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALY 264
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli
[TaxId: 562]}
Length = 258
Score = 29.0 bits (63), Expect = 0.65
Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Query: 252 FKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA 311
F + + + LV+V G + + + L + A A
Sbjct: 24 FSALVNYRESHQRPLVIVH--GGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALA 81
Query: 312 GAMRIENNYKSESNYEFNIKPQW 334
G ++ + +
Sbjct: 82 GTANKTLLAWAKKHQIAAVGLFL 104
>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 282
Score = 26.7 bits (58), Expect = 3.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 252 FKCIAALKNTGINKLVVVGGVGANKQLRKKLNI 284
+ I LK TGI ++V GG A Q+ K L I
Sbjct: 43 IQDIILLKYTGIKPIIVHGGGPAISQMMKDLGI 75
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 26.2 bits (57), Expect = 3.7
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 22/73 (30%)
Query: 262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYK 321
G+NK+++VG +G + ++R NG +A + +++
Sbjct: 4 GVNKVILVGNLGQDPEVRY---------------------MPNGGAVANI-TLATSESWR 41
Query: 322 SESNYEFNIKPQW 334
++ E + +W
Sbjct: 42 DKATGEMKEQTEW 54
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 26.2 bits (57), Expect = 4.9
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 246 IIDVLTFKCIAALKNTGINKLVVVGGVGANKQL 278
+ D ++ AAL NT I ++ V+ +K +
Sbjct: 144 LFDAISIAVKAALFNTRIPRVRVLEDEEGSKDI 176
>d1n7za_ b.127.1.1 (A:) Baseplate structural protein gp8
{Bacteriophage T4 [TaxId: 10665]}
Length = 328
Score = 26.5 bits (58), Expect = 5.2
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 227 KLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILK 286
+ + KAN R A +D + F A N G ++ ++ K N+
Sbjct: 229 DFGLIYRVKANTIRF--KAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKA 286
Query: 287 KQYNYTVFYPKKEFCTDNGAMI 308
++ Y ++ +G MI
Sbjct: 287 EKDYYD----PEDLMRHSGEMI 304
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 25.9 bits (56), Expect = 5.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 246 IIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQY 289
I+D TF +AALKN + ++ + ++N+ KK Y
Sbjct: 142 ILDACTFALLAALKNVQLPEVTINEETAL-----AEVNLKKKSY 180
>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil
seed rape (Brassica napus) [TaxId: 3708]}
Length = 244
Score = 25.8 bits (56), Expect = 6.4
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 144 IKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPE 183
I VN + F+ + D KI + LG G PE
Sbjct: 174 INVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPE 213
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 25.9 bits (55), Expect = 9.5
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 15 LALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELK 72
L + + N+R +V K + P L T + P+L KL ++ ++++K
Sbjct: 525 LRMAGDPVANVRFNVA-------KSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.403
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,249,718
Number of extensions: 59038
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 16
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)