BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9395
(637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/633 (60%), Positives = 479/633 (75%), Gaps = 8/633 (1%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLV 60
M + FDVI++GGGHAGTEAA+ +ARMGQ+TLLL+HNIDT+GQMSCNP+IGGIGK HLV
Sbjct: 23 MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 82
Query: 61 KEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL 120
KE+DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R LENQ NL +
Sbjct: 83 KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 142
Query: 121 FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFST 180
FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS GR GD +
Sbjct: 143 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 202
Query: 181 TSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQ 240
L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +GN + HP+Q
Sbjct: 203 IPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFMGNASQHPQQ 261
Query: 241 LSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEP 300
+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF + H IFLEP
Sbjct: 262 VPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEP 321
Query: 301 EGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLET 360
EG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P +LK +LE+
Sbjct: 322 EGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLES 381
Query: 361 KQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT 420
K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYLGVLVDDL T
Sbjct: 382 KFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCT 441
Query: 421 KGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQR 480
G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K E I +E QR
Sbjct: 442 LGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQR 501
Query: 481 LKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEI 540
LK TW+ PS E L + E S +LL P + Y LT+L + +
Sbjct: 502 LKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTL------TPFAPAL 555
Query: 541 YQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKY 600
E +Q++IQ++YEGYI RQ P LDY ++ LS E KLN +
Sbjct: 556 TDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDH 615
Query: 601 KPETIGQASRISGVTPAALTLLLIYL-KSGFLK 632
KP +IGQASRISGVTPAA+++LL++L K G L+
Sbjct: 616 KPASIGQASRISGVTPAAISILLVWLKKQGMLR 648
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/633 (60%), Positives = 479/633 (75%), Gaps = 8/633 (1%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLV 60
M + FDVI++GGGHAGTEAA+ +ARMGQ+TLLL+HNIDT+GQMSCNP+IGGIGK HLV
Sbjct: 21 MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 80
Query: 61 KEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL 120
KE+DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R LENQ NL +
Sbjct: 81 KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 140
Query: 121 FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFST 180
FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS GR GD +
Sbjct: 141 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 200
Query: 181 TSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQ 240
L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +GN + HP+Q
Sbjct: 201 IPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFMGNASQHPQQ 259
Query: 241 LSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEP 300
+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF + H IFLEP
Sbjct: 260 VPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEP 319
Query: 301 EGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLET 360
EG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P +LK +LE+
Sbjct: 320 EGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLES 379
Query: 361 KQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT 420
K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYLGVLVDDL T
Sbjct: 380 KFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCT 439
Query: 421 KGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQR 480
G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K E I +E QR
Sbjct: 440 LGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQR 499
Query: 481 LKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEI 540
LK TW+ PS E L + E S +LL P + Y LT+L + +
Sbjct: 500 LKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTL------TPFAPAL 553
Query: 541 YQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKY 600
E +Q++IQ++YEGYI RQ P LDY ++ LS E KLN +
Sbjct: 554 TDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDH 613
Query: 601 KPETIGQASRISGVTPAALTLLLIYL-KSGFLK 632
KP +IGQASRISGVTPAA+++LL++L K G L+
Sbjct: 614 KPASIGQASRISGVTPAAISILLVWLKKQGMLR 646
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/556 (61%), Positives = 432/556 (77%), Gaps = 7/556 (1%)
Query: 2 LFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVK 61
+ FDVI++GGGHAGTEAA+ +ARMGQ+TLLL+HNIDT+GQMSCNP+IGGIGK HLVK
Sbjct: 28 FYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 87
Query: 62 EIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF 121
E+DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R LENQ NL +F
Sbjct: 88 EVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF 147
Query: 122 QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTT 181
Q+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS GR GD +
Sbjct: 148 QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSI 207
Query: 182 SLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQL 241
L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +GN + HP+Q+
Sbjct: 208 PLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFMGNASQHPQQV 266
Query: 242 SCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPE 301
C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF + H IFLEPE
Sbjct: 267 PCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPE 326
Query: 302 GIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETK 361
G+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P +LK +LE+K
Sbjct: 327 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 386
Query: 362 QIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITK 421
I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYLGVLVDDL T
Sbjct: 387 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTL 446
Query: 422 GIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRL 481
G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K E I +E QRL
Sbjct: 447 GTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRL 506
Query: 482 KDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIY 541
K TW+ PS E L + E S +LL P + Y LT+L + +
Sbjct: 507 KSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTL------TPFAPALT 560
Query: 542 QEDIKKQLKIQLQYEG 557
E +Q++IQ++YEG
Sbjct: 561 DEQAAEQVEIQVKYEG 576
>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
Length = 637
Score = 575 bits (1481), Expect = e-164, Method: Compositional matrix adjust.
Identities = 313/633 (49%), Positives = 427/633 (67%), Gaps = 36/633 (5%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEID 64
+FDV+V+GGGHAG EAAL +ARMG KT + N DTIGQMSCNP+IGGI K +V+EID
Sbjct: 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREID 85
Query: 65 AMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEE 124
A+GG M A D++GIQF++LN+ KG AV++ RAQ D+ Y++ ++ ENQ NLY+ QEE
Sbjct: 86 ALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEE 145
Query: 125 VDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLA 184
V D+I+K N+++GV T +G+++ +K V++TTGTFLNG I+IG K GR G+ + L+
Sbjct: 146 VVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLS 205
Query: 185 KRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV----LGNINLHPK- 239
+ R KTGTP R+DKRTIDFS +E GD DP P FS +G+ PK
Sbjct: 206 DFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGD-DPPPKFSFWTEPVGSY-WFPKG 263
Query: 240 --QLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIF 297
Q++C+IT+T KTH IIR + ++ G I+ IGPRYCPSIEDK+ +FP K+ H IF
Sbjct: 264 KEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIF 323
Query: 298 LEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSS 357
LEPEG+ E YPNG+STSLP E Q E+ +SI G++N +IRP YAIEYD P L +
Sbjct: 324 LEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPT 383
Query: 358 LETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDD 417
LETK+I GLF AG NGTTGYEEAA QG++AG+NAAL + ++P RD++Y+GV++DD
Sbjct: 384 LETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDD 443
Query: 418 LITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKE 477
L TKG+ EPYR+FTSR+EYRL +R+DNA LRL ++G +LG +S +Q+K + KE
Sbjct: 444 LTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYK--------LVKE 495
Query: 478 LQRLKDTWINPSILNTGESERV---LGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKN 534
L+R + W +SERV +G + YS++ L+T +NY TL + K
Sbjct: 496 LEREIEKW-----KEFYKSERVSVAVGGDTRS-YSVATLMT---MNY-TLDDV-----KE 540
Query: 535 LYNTEIYQED-IKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEA 593
+ E+ Q +K++++IQL+YE YI R+ P ++DY KI L+ EA
Sbjct: 541 KFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEA 600
Query: 594 RQKLNKYKPETIGQASRISGVTPAALTLLLIYL 626
R+KL K+KP T+GQASRI G+TPAA+T LL+YL
Sbjct: 601 REKLKKFKPITVGQASRIDGITPAAITALLVYL 633
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 283/621 (45%), Positives = 397/621 (63%), Gaps = 4/621 (0%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAM 66
+DVIVVG GHAG EAAL AR G LL++ ++ + +MSCNP+IGG+ K + +EIDA+
Sbjct: 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDAL 81
Query: 67 GGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVD 126
GG M A D +GIQFR+LN SKG A+ + RAQ D+ Y +R +E++ N+ L Q+ V
Sbjct: 82 GGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVI 141
Query: 127 DLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR-FGDFSTTSLAK 185
+ + K V + G +K IL GTFLNG IHIG+ + GR + L +
Sbjct: 142 GVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVEGLTE 201
Query: 186 RLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFI 245
L L S GRLKTGTPPRID R++D++ + EQ GD DPVP FS + +SC++
Sbjct: 202 SLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGDVDPVP-FSFSSTSVANRNLVSCYL 260
Query: 246 THTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVI 305
T T EKTH+I+R+ F SP+F+GK++ +GPRYCPSIEDK+ RFP K SHHIFLEPEG
Sbjct: 261 TKTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPEGTDT 320
Query: 306 NEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHG 365
E Y NG STSLP + QI ++SI G++ A +IRPGYAIEYD+F+P ++S++ET+ +
Sbjct: 321 VEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRPVEN 380
Query: 366 LFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQE 425
LFFAGQINGT+GYEEAA+QGL+AG+NA ++ + GRDQAY+GVL+DDLITK +E
Sbjct: 381 LFFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITKETKE 440
Query: 426 PYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTW 485
PYRMFTS AE+RL LR DNADLRL +IG+ VS E + + L+ +K
Sbjct: 441 PYRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVMKTAK 500
Query: 486 INPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDI 545
+ P+ +NT + L + +K +L+ P ++ + ++ ++ +
Sbjct: 501 VTPAEINTLLMNKGL-QELKTPARALSLIKRPGISLQDILE-HSLSVRSAAEELCNDPRV 558
Query: 546 KKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYKPETI 605
+Q++I+++YEGYI R+ P N +Y + SLS E R+KL K++P TI
Sbjct: 559 AEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHRPATI 618
Query: 606 GQASRISGVTPAALTLLLIYL 626
GQASRI GV+P+ +++L+I L
Sbjct: 619 GQASRILGVSPSDVSILMIRL 639
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Glutathione
Length = 443
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 312 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 370
G T L + Q L+Q I G++NA I+R G Y N P L +LE ++ GL+ AG
Sbjct: 276 GFQTGLKWPEQKRLIQXIPGLENAEIVRYGVXHRNTYLNAPRLLGETLEFREAEGLYAAG 335
Query: 371 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT---KGIQEPY 427
+ G GY E+A+ G LAGLNAA + P P +++ LG LV L T +G Q Y
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARKALGLPPVAP-PEESXLGGLVRYLATANPEGFQPXY 394
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLL---------SHNIDTIGQMSCNPSIGGIGKSH- 58
V VVG G AG+EAA R+G L +H D ++ C+ S+GG G+++
Sbjct: 4 VNVVGAGLAGSEAAWTLLRLGVPVRLFEXRPKRXTPAHGTDRFAEIVCSNSLGGEGETNA 63
Query: 59 ---LVKEIDAMGGIMAIATD 75
L E G ++ A D
Sbjct: 64 KGLLQAEXRRAGSLVXEAAD 83
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Tetrahydrofolate
Length = 443
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 312 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 370
G T L + Q L+Q I G++NA I+R G Y N P L +LE ++ GL+ AG
Sbjct: 276 GFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGETLEFREAEGLYAAG 335
Query: 371 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT---KGIQEPY 427
+ G GY E+A+ G LAGLNAA + P P +++ LG LV L T +G Q Y
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARKALGLPPVAP-PEESMLGGLVRYLATANPEGFQPMY 394
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 9 VIVVGGGHAGTEAALVSARMG---------QKTLLLSHNIDTIGQMSCNPSIGGIGKSH- 58
V VVG G AG+EAA R+G K + +H D ++ C+ S+GG G+++
Sbjct: 4 VNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGETNA 63
Query: 59 ---LVKEIDAMGGIMAIATD 75
L E+ G ++ A D
Sbjct: 64 KGLLQAEMRRAGSLVMEAAD 83
>pdb|2CUL|A Chain A, Crystal Structure Of The Gida-Related Protein From Thermus
Thermophilus Hb8
Length = 232
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 31/186 (16%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEID 64
+ + V++VG G +G E A A+ G + LL+ ++D + P S L + D
Sbjct: 2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYD 61
Query: 65 AMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEE 124
K V A A+ ++ LE L+LFQ
Sbjct: 62 ----------------------PKDERVWAFHARA---------KYLLEGLRPLHLFQAT 90
Query: 125 VDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLA 184
L+++ N+++GV T G + V+L G+FL ++ +G AGR + S L
Sbjct: 91 ATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLL 150
Query: 185 KRLKEL 190
+ L L
Sbjct: 151 EDLSRL 156
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL-SHNIDTIGQMSCNPSIGGIGKSHLVK 61
K+DV+++GGG AG+ AA +R G K LL+ S + IG C + + K+H K
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDA---VSKAHFDK 59
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGI 54
+DVIVVGGG +G AAL AR G K L+L + +S P+ G+
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGL 49
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG---QMSCNPSIGGIGKSHLVKEID 64
DV+++GGG AG AA+ +A++G T + G + C PS + SHL ++
Sbjct: 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMH 66
Query: 65 AMGGIMAIATDKSGIQFRILN--SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 122
I + I+ + N +K AV+ ++ + K + +Y N F+
Sbjct: 67 TEAQKRGIDVN-GDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG----SFE 121
Query: 123 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 157
+E + + + G V + I K +I+ TG+
Sbjct: 122 DETKIRVTPVDGLEGTVKEDHI-LDVKNIIVATGS 155
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
Length = 476
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
KFDVIV+G G G AA+ SA++G KT L+
Sbjct: 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALI 32
>pdb|4F0D|A Chain A, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
pdb|4F0D|B Chain B, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
Length = 277
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 320 EAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYE 379
+A+ E +Q + G + + P + E +YF+P N K ETK L +A + +
Sbjct: 100 KAEFEKIQKLTGAPHTPVPAPDFLFEIEYFDPANAK-FYETKGERDLIYAFHGSRLENFH 158
Query: 380 EAASQGLLAGLN-AALFSQ 397
GL LN +LF +
Sbjct: 159 SIIHNGLHCHLNKTSLFGE 177
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38
KFDVI+VG G A AAL SAR KTL++
Sbjct: 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET 47
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSC 47
K + ++G G GT ALV AR GQK L S+ D + +M
Sbjct: 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQA 70
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
Length = 323
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38
KFDVI+VG G A AAL SAR KTL++
Sbjct: 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET 47
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ FDVIVVG G G A A+ G KTLL+
Sbjct: 2 THFDVIVVGAGSMGMAAGYYLAKQGVKTLLV 32
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGG 53
+DVIV+GGG+ G A G KTLLL D IG S + +I G
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEAR-DRIGGRSWSSNIDG 85
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM 45
DV+V+G G AG AA ++ MG +L NID + Q+
Sbjct: 170 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMS---------CNPS 50
KFDV+V+G G G AA+ +A++G KT + I G+++ C PS
Sbjct: 3 KFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPS 56
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGG 53
+DVIV+GGG+ G A G KTLLL D IG S + +I G
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEAR-DRIGGRSWSSNIDG 85
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGG 53
+DVIV+GGG+ G A G KTLLL D IG S + +I G
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEAR-DRIGGRSWSSNIDG 85
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM 45
DV+V+G G AG AA ++ MG +L NID + Q+
Sbjct: 170 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM 45
DV+V+G G AG AA ++ MG +L NID + Q+
Sbjct: 170 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPS---------IGG--IG 55
+D IVVGGG +G +AA G+K LLL G+ S IGG +
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH 61
Query: 56 KSH---LVKEIDAMGGIMAIATDKSGIQFRI----------LNSSKGAAVRATRAQVDRI 102
+ H L E+D G A A++ + + R+ + S+ AV A + R
Sbjct: 62 RKHHPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRD 121
Query: 103 LYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILT 154
++ + LENQ +++DL I N+ V K+ + S+ +L
Sbjct: 122 AHRIDLEKGLENQ--------DLEDLDIPLNEY---VDKLDLPPVSRQFLLA 162
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ FDVIVVG G G A A+ G KTLL+
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ FDVIVVG G G A A+ G KTLL+
Sbjct: 3 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 33
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ FDVIVVG G G A A+ G KTLL+
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
Length = 389
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ FDVIVVG G G A A+ G KTLL+
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
Length = 389
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ FDVIVVG G G A A+ G KTLL+
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPS---------IGG--IG 55
+D IVVGGG +G +AA G+K LLL G+ S IGG +
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH 61
Query: 56 KSH---LVKEIDAMGGIMAIATDKSGIQFRI----------LNSSKGAAVRATRAQVDRI 102
+ H L E+D G A A++ + + R+ + S+ AV A + R
Sbjct: 62 RKHHPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRD 121
Query: 103 LYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILT 154
++ + LENQ +++DL I N+ V K+ + S+ +L
Sbjct: 122 AHRIDLEKGLENQ--------DLEDLDIPLNEY---VDKLDLPPVSRQFLLA 162
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39
+DV+++GGG AG AA+ + R TL+L +
Sbjct: 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM 41
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG----QMSCNPSIGGIGKSH 58
DV V+G G G AA+ +A++G KT+ + N +T+G + C PS + SH
Sbjct: 8 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKN-ETLGGTCLNVGCIPSKALLNNSH 61
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
Length = 474
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG----QMSCNPSIGGIGKSH 58
DV V+G G G AA+ +A++G KT+ + N +T+G + C PS + SH
Sbjct: 8 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKN-ETLGGTCLNVGCIPSKALLNNSH 61
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG----QMSCNPSIGGIGKSH 58
DV V+G G G AA+ +A++G KT+ + N +T+G + C PS + SH
Sbjct: 29 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKN-ETLGGTCLNVGCIPSKALLNNSH 82
>pdb|3FBS|A Chain A, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
pdb|3FBS|B Chain B, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
Length = 297
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
KFDVI++GG +AG AAL R + LL+
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARKNILLV 31
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 22/147 (14%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI---DTIGQMSCNPSIGGIGKSHLVKEI 63
FD+IV+GGG G+ A A G + LLL IG+ ++ GI ++
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGI--CAMLGLT 65
Query: 64 DAM---------GGIMAIATDKSGIQF---RILNSSKGAAVRATRAQVDRILYKQAIRFY 111
D M GG + F R + G A + RA+ D +L + + R
Sbjct: 66 DEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKG 125
Query: 112 LENQLNLYLFQEEVDDLIIKTNKILGV 138
++ + + EV D++ + + +GV
Sbjct: 126 VDVRE-----RHEVIDVLFEGERAVGV 147
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL-SHNI-DTIGQMSCNP 49
+ +D +V+GGG G E+A +A +G + ++ SH + T + C P
Sbjct: 19 ASYDYLVIGGGSGGLESAWRAAELGARAAVVESHKLGGTCVNVGCVP 65
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL-SHNI-DTIGQMSCNP 49
+ +D +V+GGG G E+A +A +G + ++ SH + T + C P
Sbjct: 2 ASYDYLVIGGGSGGLESAWRAAELGARAAVVESHKLGGTCVNVGCVP 48
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43
FDV+V+GGG +G AA + G L+L D +G
Sbjct: 3 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEAR-DRVG 38
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43
FDV+V+GGG +G AA + G L+L D +G
Sbjct: 14 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEAR-DRVG 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,240,985
Number of Sequences: 62578
Number of extensions: 771746
Number of successful extensions: 2054
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1904
Number of HSP's gapped (non-prelim): 154
length of query: 637
length of database: 14,973,337
effective HSP length: 105
effective length of query: 532
effective length of database: 8,402,647
effective search space: 4470208204
effective search space used: 4470208204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)