Query psy9395
Match_columns 637
No_of_seqs 455 out of 3874
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:01:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0445 GidA Flavin-dependent 100.0 4E-183 8E-188 1429.8 39.1 615 5-630 3-618 (621)
2 KOG2311|consensus 100.0 5E-165 1E-169 1261.6 33.9 618 5-631 27-653 (679)
3 PRK05192 tRNA uridine 5-carbox 100.0 1E-161 2E-166 1327.0 53.3 611 6-631 4-614 (618)
4 TIGR00136 gidA glucose-inhibit 100.0 6E-155 1E-159 1271.2 52.4 615 7-629 1-616 (617)
5 PF01134 GIDA: Glucose inhibit 100.0 1.2E-86 2.6E-91 699.1 26.2 391 8-400 1-392 (392)
6 TIGR00137 gid_trmFO tRNA:m(5)U 100.0 1.5E-70 3.2E-75 586.1 27.8 382 8-483 2-428 (433)
7 PRK05335 tRNA (uracil-5-)-meth 100.0 2.5E-68 5.3E-73 564.6 29.5 380 7-483 3-431 (436)
8 COG1206 Gid NAD(FAD)-utilizing 100.0 9.6E-52 2.1E-56 409.3 23.3 363 7-463 4-410 (439)
9 COG2081 Predicted flavoprotein 100.0 5.7E-38 1.2E-42 323.6 22.6 346 6-396 3-407 (408)
10 PF03486 HI0933_like: HI0933-l 100.0 9E-38 1.9E-42 336.2 11.8 344 7-391 1-409 (409)
11 TIGR00275 flavoprotein, HI0933 100.0 1.4E-29 3.1E-34 274.7 18.5 338 10-390 1-400 (400)
12 PF13932 GIDA_assoc_3: GidA as 100.0 5.9E-30 1.3E-34 205.6 5.5 72 553-624 1-72 (72)
13 TIGR03862 flavo_PP4765 unchara 99.9 2E-25 4.3E-30 236.8 18.7 316 29-396 1-375 (376)
14 PRK06481 fumarate reductase fl 99.7 3E-14 6.6E-19 159.5 26.8 154 5-161 60-253 (506)
15 PRK06452 sdhA succinate dehydr 99.7 7.5E-15 1.6E-19 166.3 22.1 165 6-178 5-214 (566)
16 PRK09078 sdhA succinate dehydr 99.7 1.1E-13 2.3E-18 157.8 31.7 152 6-160 12-213 (598)
17 PTZ00139 Succinate dehydrogena 99.6 2.8E-14 6.2E-19 162.8 25.0 168 5-178 28-245 (617)
18 TIGR00551 nadB L-aspartate oxi 99.6 1.2E-14 2.6E-19 162.1 21.4 167 6-178 2-205 (488)
19 PRK08626 fumarate reductase fl 99.6 9.7E-15 2.1E-19 167.5 20.9 170 6-181 5-239 (657)
20 PRK06175 L-aspartate oxidase; 99.6 2.4E-14 5.2E-19 157.2 23.0 151 6-159 4-189 (433)
21 PRK06854 adenylylsulfate reduc 99.6 2.2E-14 4.8E-19 163.6 23.5 153 6-159 11-195 (608)
22 PRK06069 sdhA succinate dehydr 99.6 2.4E-14 5.3E-19 162.8 23.3 150 6-159 5-200 (577)
23 PRK08401 L-aspartate oxidase; 99.6 2.2E-14 4.8E-19 159.1 21.9 149 7-160 2-176 (466)
24 PRK08274 tricarballylate dehyd 99.6 5.4E-14 1.2E-18 156.3 24.8 156 5-161 3-194 (466)
25 PRK09231 fumarate reductase fl 99.6 3.5E-14 7.6E-19 161.3 23.6 168 6-178 4-212 (582)
26 PRK07573 sdhA succinate dehydr 99.6 1.8E-14 4E-19 164.9 21.3 168 6-178 35-248 (640)
27 COG0029 NadB Aspartate oxidase 99.6 3.2E-14 7E-19 151.1 21.4 167 8-182 9-216 (518)
28 PRK07803 sdhA succinate dehydr 99.6 1.4E-13 3.1E-18 157.5 28.4 152 6-159 8-213 (626)
29 PRK05945 sdhA succinate dehydr 99.6 2.1E-14 4.6E-19 163.1 21.5 166 7-178 4-213 (575)
30 PRK06263 sdhA succinate dehydr 99.6 4.3E-14 9.2E-19 159.8 23.6 165 6-178 7-213 (543)
31 PLN00128 Succinate dehydrogena 99.6 5.5E-14 1.2E-18 160.6 24.6 169 5-179 49-267 (635)
32 PRK07512 L-aspartate oxidase; 99.6 1.7E-14 3.7E-19 161.6 19.2 167 6-178 9-213 (513)
33 TIGR01176 fum_red_Fp fumarate 99.6 7.5E-14 1.6E-18 158.3 24.3 168 6-178 3-211 (580)
34 PRK07121 hypothetical protein; 99.6 1.8E-13 3.8E-18 153.1 26.3 155 5-160 19-240 (492)
35 PRK07395 L-aspartate oxidase; 99.6 3.8E-14 8.3E-19 159.8 20.8 169 4-178 7-213 (553)
36 TIGR01812 sdhA_frdA_Gneg succi 99.6 4.4E-14 9.5E-19 160.7 21.1 148 8-160 1-192 (566)
37 PRK13800 putative oxidoreducta 99.6 9.2E-14 2E-18 165.3 24.6 153 6-159 13-205 (897)
38 PRK07057 sdhA succinate dehydr 99.6 4.8E-14 1E-18 160.5 21.3 167 6-178 12-227 (591)
39 PRK08958 sdhA succinate dehydr 99.6 9.5E-14 2.1E-18 157.8 22.7 172 1-178 1-222 (588)
40 PRK08205 sdhA succinate dehydr 99.6 1.4E-13 3.1E-18 156.6 24.1 167 5-178 4-222 (583)
41 COG1053 SdhA Succinate dehydro 99.6 1.2E-13 2.6E-18 154.5 22.9 174 5-181 5-221 (562)
42 PRK08071 L-aspartate oxidase; 99.6 6.7E-14 1.4E-18 156.8 20.6 165 6-178 3-206 (510)
43 PRK07804 L-aspartate oxidase; 99.6 7.6E-14 1.7E-18 157.4 20.5 181 3-194 13-237 (541)
44 PRK08275 putative oxidoreducta 99.6 3.7E-13 8.1E-18 152.4 25.7 152 6-159 9-200 (554)
45 PRK09077 L-aspartate oxidase; 99.6 2.9E-13 6.3E-18 152.6 24.3 168 5-178 7-223 (536)
46 PRK08641 sdhA succinate dehydr 99.6 7.7E-14 1.7E-18 158.7 19.7 169 7-180 4-218 (589)
47 COG2509 Uncharacterized FAD-de 99.6 1.4E-13 3E-18 144.7 18.9 263 103-396 174-483 (486)
48 PLN02815 L-aspartate oxidase 99.6 1.5E-13 3.2E-18 155.8 20.3 165 6-178 29-238 (594)
49 TIGR01811 sdhA_Bsu succinate d 99.5 2.5E-13 5.4E-18 154.7 21.0 166 9-178 1-212 (603)
50 TIGR02061 aprA adenosine phosp 99.5 2.2E-12 4.7E-17 146.4 25.6 147 8-159 1-191 (614)
51 KOG2820|consensus 99.5 1E-13 2.2E-18 140.1 11.6 157 3-164 4-217 (399)
52 COG0492 TrxB Thioredoxin reduc 99.5 1.5E-12 3.3E-17 135.3 20.6 111 6-158 3-114 (305)
53 PTZ00306 NADH-dependent fumara 99.5 2.1E-12 4.6E-17 157.1 24.6 154 6-161 409-622 (1167)
54 PRK12844 3-ketosteroid-delta-1 99.5 1.1E-11 2.3E-16 140.5 26.9 58 103-161 209-271 (557)
55 PRK14694 putative mercuric red 99.5 1.2E-12 2.6E-17 145.6 18.4 146 1-160 1-153 (468)
56 COG1249 Lpd Pyruvate/2-oxoglut 99.5 5.7E-14 1.2E-18 153.1 7.0 143 6-161 4-149 (454)
57 TIGR01421 gluta_reduc_1 glutat 99.4 1.1E-11 2.3E-16 137.1 23.0 138 5-159 1-141 (450)
58 COG0644 FixC Dehydrogenases (f 99.4 1.6E-11 3.6E-16 133.5 24.1 145 6-158 3-151 (396)
59 TIGR03143 AhpF_homolog putativ 99.4 1.4E-11 3E-16 139.6 21.9 115 4-161 2-116 (555)
60 TIGR01424 gluta_reduc_2 glutat 99.4 8.4E-12 1.8E-16 137.9 19.1 138 6-159 2-142 (446)
61 PRK06116 glutathione reductase 99.4 1.4E-11 3E-16 136.4 20.7 138 5-159 3-143 (450)
62 TIGR01292 TRX_reduct thioredox 99.4 2.5E-11 5.3E-16 126.4 21.2 112 7-159 1-112 (300)
63 PRK05249 soluble pyridine nucl 99.4 4.4E-11 9.5E-16 132.8 22.5 146 1-159 1-149 (461)
64 PRK06467 dihydrolipoamide dehy 99.4 1.5E-11 3.4E-16 136.6 18.8 144 5-159 3-148 (471)
65 PRK13748 putative mercuric red 99.4 2.3E-11 4.9E-16 138.5 20.5 38 6-44 98-135 (561)
66 PRK08010 pyridine nucleotide-d 99.4 5.8E-11 1.2E-15 131.1 22.0 128 6-159 3-131 (441)
67 PRK06370 mercuric reductase; V 99.4 1.3E-10 2.8E-15 129.1 24.8 145 1-160 1-146 (463)
68 PRK06327 dihydrolipoamide dehy 99.3 8.3E-11 1.8E-15 131.0 22.5 149 5-160 3-158 (475)
69 PRK04176 ribulose-1,5-biphosph 99.3 1.6E-11 3.4E-16 125.3 15.1 135 6-158 25-172 (257)
70 PRK06416 dihydrolipoamide dehy 99.3 8.2E-11 1.8E-15 130.7 21.0 139 4-159 2-146 (462)
71 PLN02507 glutathione reductase 99.3 1.1E-10 2.3E-15 130.6 21.8 144 6-159 25-179 (499)
72 PRK06115 dihydrolipoamide dehy 99.3 1.7E-10 3.6E-15 128.2 21.6 141 6-159 3-148 (466)
73 PRK10262 thioredoxin reductase 99.3 1.5E-10 3.2E-15 122.4 20.2 118 1-160 1-118 (321)
74 PRK10157 putative oxidoreducta 99.3 2E-11 4.2E-16 134.2 13.7 148 1-158 1-163 (428)
75 TIGR01423 trypano_reduc trypan 99.3 1.3E-10 2.9E-15 129.3 20.1 40 353-393 309-349 (486)
76 TIGR03140 AhpF alkyl hydropero 99.3 4.8E-11 1.1E-15 134.1 16.6 112 5-159 211-323 (515)
77 PRK14727 putative mercuric red 99.3 2.4E-10 5.2E-15 127.4 21.6 38 6-43 16-53 (479)
78 PRK15317 alkyl hydroperoxide r 99.3 1.8E-10 3.8E-15 129.7 20.3 112 5-159 210-322 (517)
79 PLN02546 glutathione reductase 99.3 3.8E-11 8.3E-16 135.3 14.8 142 6-159 79-228 (558)
80 TIGR00292 thiazole biosynthesi 99.3 7.1E-11 1.5E-15 120.2 15.2 135 6-158 21-169 (254)
81 PF00890 FAD_binding_2: FAD bi 99.3 6.9E-11 1.5E-15 129.5 16.3 150 8-160 1-204 (417)
82 PF01946 Thi4: Thi4 family; PD 99.3 5.8E-11 1.3E-15 114.7 13.5 134 6-157 17-163 (230)
83 TIGR02053 MerA mercuric reduct 99.3 1.1E-10 2.4E-15 129.7 17.3 37 7-44 1-37 (463)
84 PF12831 FAD_oxidored: FAD dep 99.3 6.1E-12 1.3E-16 138.1 7.0 144 8-157 1-148 (428)
85 PTZ00058 glutathione reductase 99.3 3.9E-10 8.5E-15 127.1 21.5 46 5-51 47-95 (561)
86 PRK07251 pyridine nucleotide-d 99.3 3.8E-10 8.3E-15 124.5 21.1 34 6-39 3-36 (438)
87 PF01266 DAO: FAD dependent ox 99.3 9.9E-11 2.1E-15 124.4 15.9 146 8-158 1-202 (358)
88 PRK07818 dihydrolipoamide dehy 99.2 7.8E-10 1.7E-14 123.0 23.4 33 6-38 4-36 (466)
89 COG1635 THI4 Ribulose 1,5-bisp 99.2 7.2E-11 1.6E-15 113.2 12.0 132 7-157 31-176 (262)
90 PRK10015 oxidoreductase; Provi 99.2 4.7E-11 1E-15 131.1 11.7 147 1-158 1-163 (429)
91 PRK07494 2-octaprenyl-6-methox 99.2 9.6E-11 2.1E-15 127.1 13.5 149 1-158 3-166 (388)
92 PRK06292 dihydrolipoamide dehy 99.2 8.2E-10 1.8E-14 122.7 20.8 33 6-38 3-35 (460)
93 PRK12834 putative FAD-binding 99.2 3.3E-10 7.1E-15 128.4 17.9 155 5-161 3-229 (549)
94 PRK06912 acoL dihydrolipoamide 99.2 1.3E-09 2.8E-14 121.0 22.1 139 8-160 2-145 (458)
95 PRK07845 flavoprotein disulfid 99.2 7.7E-10 1.7E-14 123.0 20.2 142 7-160 2-152 (466)
96 PLN02661 Putative thiazole syn 99.2 1.7E-10 3.8E-15 120.8 13.8 136 6-158 92-243 (357)
97 TIGR01350 lipoamide_DH dihydro 99.2 1.2E-09 2.6E-14 121.4 20.6 139 6-159 1-143 (461)
98 PRK12837 3-ketosteroid-delta-1 99.2 6.6E-10 1.4E-14 124.9 18.7 157 2-161 3-237 (513)
99 PRK08773 2-octaprenyl-3-methyl 99.2 3.1E-10 6.8E-15 123.3 15.5 153 1-158 1-168 (392)
100 PRK06185 hypothetical protein; 99.2 2.9E-10 6.2E-15 124.1 14.6 152 1-158 1-168 (407)
101 PLN02463 lycopene beta cyclase 99.1 8.1E-10 1.8E-14 121.4 16.5 139 6-158 28-168 (447)
102 PRK07846 mycothione reductase; 99.1 3.5E-09 7.6E-14 117.2 20.9 41 353-394 283-324 (451)
103 TIGR01813 flavo_cyto_c flavocy 99.1 1.2E-09 2.7E-14 120.5 17.2 149 8-160 1-193 (439)
104 TIGR02032 GG-red-SF geranylger 99.1 4.4E-10 9.5E-15 116.5 12.7 143 7-158 1-147 (295)
105 PRK11101 glpA sn-glycerol-3-ph 99.1 1.1E-09 2.3E-14 124.1 16.4 152 6-158 6-210 (546)
106 PLN02697 lycopene epsilon cycl 99.1 1E-09 2.2E-14 122.6 15.9 138 5-158 107-247 (529)
107 PRK12845 3-ketosteroid-delta-1 99.1 2E-09 4.3E-14 121.9 18.0 57 104-161 219-280 (564)
108 TIGR01438 TGR thioredoxin and 99.1 2.4E-09 5.1E-14 119.5 18.1 33 6-38 2-34 (484)
109 TIGR03452 mycothione_red mycot 99.1 4.1E-09 9E-14 116.7 19.4 41 353-394 286-327 (452)
110 TIGR01790 carotene-cycl lycope 99.1 1.5E-09 3.1E-14 117.8 15.5 137 8-158 1-140 (388)
111 PRK07608 ubiquinone biosynthes 99.1 1.8E-09 3.8E-14 117.1 15.9 150 6-158 5-166 (388)
112 COG0654 UbiH 2-polyprenyl-6-me 99.1 1.7E-09 3.8E-14 117.3 15.8 145 6-158 2-161 (387)
113 PRK08020 ubiF 2-octaprenyl-3-m 99.1 1.5E-09 3.2E-14 118.0 15.2 152 4-158 3-168 (391)
114 PRK06847 hypothetical protein; 99.1 1.1E-09 2.4E-14 118.1 14.0 147 4-158 2-162 (375)
115 TIGR01377 soxA_mon sarcosine o 99.1 1.9E-09 4.1E-14 116.5 15.8 148 7-158 1-199 (380)
116 PRK12266 glpD glycerol-3-phosp 99.1 1.5E-09 3.2E-14 121.8 15.4 156 1-158 1-215 (508)
117 PRK11259 solA N-methyltryptoph 99.1 2.8E-09 6.1E-14 115.0 16.7 150 6-158 3-203 (376)
118 PRK11728 hydroxyglutarate oxid 99.1 3.4E-09 7.4E-14 115.3 16.9 148 7-158 3-203 (393)
119 PRK12831 putative oxidoreducta 99.1 3.5E-09 7.6E-14 117.4 17.1 35 5-39 139-173 (464)
120 PRK12775 putative trifunctiona 99.0 6.1E-09 1.3E-13 124.9 19.1 54 354-408 712-766 (1006)
121 PRK12835 3-ketosteroid-delta-1 99.0 4.9E-09 1.1E-13 119.4 17.3 38 3-40 8-45 (584)
122 PRK07045 putative monooxygenas 99.0 1.5E-09 3.3E-14 117.7 12.7 147 5-158 4-164 (388)
123 PRK12842 putative succinate de 99.0 6.9E-09 1.5E-13 118.2 18.6 56 104-160 216-276 (574)
124 PRK09126 hypothetical protein; 99.0 2.7E-09 5.9E-14 115.8 14.7 146 7-158 4-166 (392)
125 KOG1335|consensus 99.0 1.2E-09 2.7E-14 112.3 10.9 139 6-158 39-184 (506)
126 PRK08163 salicylate hydroxylas 99.0 2E-09 4.2E-14 117.1 13.3 148 1-158 1-165 (396)
127 PRK05714 2-octaprenyl-3-methyl 99.0 4.8E-09 1E-13 114.5 16.3 149 7-158 3-167 (405)
128 PRK00711 D-amino acid dehydrog 99.0 3.7E-09 8.1E-14 115.7 15.4 59 98-158 197-256 (416)
129 PRK07364 2-octaprenyl-6-methox 99.0 2.1E-09 4.5E-14 117.6 13.4 149 4-158 16-180 (415)
130 PRK05732 2-octaprenyl-6-methox 99.0 6.3E-09 1.4E-13 113.0 16.9 148 7-158 4-168 (395)
131 PRK06617 2-octaprenyl-6-methox 99.0 5.3E-09 1.2E-13 113.0 16.1 147 6-158 1-159 (374)
132 PRK08850 2-octaprenyl-6-methox 99.0 4.7E-09 1E-13 114.6 15.8 148 6-158 4-167 (405)
133 TIGR02023 BchP-ChlP geranylger 99.0 2.6E-09 5.7E-14 116.0 13.7 142 7-158 1-154 (388)
134 PRK08013 oxidoreductase; Provi 99.0 4.6E-09 1E-13 114.5 15.5 150 7-158 4-167 (400)
135 TIGR01373 soxB sarcosine oxida 99.0 5.4E-09 1.2E-13 114.2 16.1 150 5-158 29-239 (407)
136 PF01494 FAD_binding_3: FAD bi 99.0 5.5E-09 1.2E-13 110.9 15.5 146 6-158 1-171 (356)
137 PF13738 Pyr_redox_3: Pyridine 99.0 9.6E-10 2.1E-14 107.9 8.9 133 10-158 1-137 (203)
138 PRK13369 glycerol-3-phosphate 99.0 3.4E-09 7.4E-14 118.9 14.2 156 1-158 1-214 (502)
139 TIGR01984 UbiH 2-polyprenyl-6- 99.0 6.4E-09 1.4E-13 112.5 15.7 146 8-158 1-161 (382)
140 PRK06134 putative FAD-binding 99.0 1.2E-08 2.6E-13 116.4 18.4 57 103-160 218-279 (581)
141 PRK12839 hypothetical protein; 99.0 1.2E-08 2.7E-13 115.8 18.4 38 3-40 5-42 (572)
142 PRK12779 putative bifunctional 99.0 1.2E-08 2.6E-13 121.4 18.9 34 6-39 306-339 (944)
143 PLN00093 geranylgeranyl diphos 99.0 4.5E-09 9.8E-14 115.9 14.1 145 5-158 38-198 (450)
144 PRK07190 hypothetical protein; 99.0 9.6E-09 2.1E-13 114.6 16.8 148 1-158 1-164 (487)
145 TIGR01988 Ubi-OHases Ubiquinon 99.0 6.6E-09 1.4E-13 112.3 15.0 148 8-158 1-162 (385)
146 TIGR03364 HpnW_proposed FAD de 99.0 6.6E-09 1.4E-13 111.7 14.8 145 7-160 1-198 (365)
147 PRK07333 2-octaprenyl-6-methox 99.0 3.8E-09 8.2E-14 115.1 13.0 145 6-158 1-166 (403)
148 PLN02985 squalene monooxygenas 99.0 4.4E-09 9.6E-14 117.9 13.7 148 5-158 42-207 (514)
149 PRK12778 putative bifunctional 99.0 8E-09 1.7E-13 121.4 16.3 33 6-38 431-463 (752)
150 PRK12843 putative FAD-binding 99.0 1.7E-08 3.8E-13 115.0 18.5 58 103-161 222-284 (578)
151 PTZ00383 malate:quinone oxidor 99.0 1.2E-08 2.7E-13 113.3 16.9 60 98-158 207-272 (497)
152 PRK08849 2-octaprenyl-3-methyl 99.0 8.3E-09 1.8E-13 111.9 15.1 149 7-158 4-166 (384)
153 PRK12409 D-amino acid dehydrog 99.0 1.5E-08 3.2E-13 110.9 17.2 59 98-158 193-257 (410)
154 KOG2404|consensus 99.0 7.1E-09 1.5E-13 104.4 13.2 150 8-158 11-205 (477)
155 PRK05976 dihydrolipoamide dehy 99.0 6.7E-09 1.5E-13 115.7 14.6 144 4-159 2-154 (472)
156 PRK06834 hypothetical protein; 99.0 6.4E-09 1.4E-13 116.1 14.2 145 7-158 4-155 (488)
157 PF05834 Lycopene_cycl: Lycope 99.0 7.8E-09 1.7E-13 111.7 14.4 138 8-158 1-141 (374)
158 TIGR02028 ChlP geranylgeranyl 99.0 5.7E-09 1.2E-13 113.7 13.4 143 7-158 1-159 (398)
159 TIGR03329 Phn_aa_oxid putative 99.0 1E-08 2.3E-13 113.8 15.8 60 97-160 178-238 (460)
160 TIGR01372 soxA sarcosine oxida 99.0 7E-08 1.5E-12 116.4 23.9 37 362-398 437-473 (985)
161 TIGR02485 CobZ_N-term precorri 99.0 1.3E-08 2.9E-13 112.1 16.2 149 11-160 1-184 (432)
162 PRK05675 sdhA succinate dehydr 98.9 2.7E-08 5.9E-13 113.1 19.1 157 19-181 1-208 (570)
163 PRK11445 putative oxidoreducta 98.9 1E-08 2.3E-13 109.7 14.8 145 6-158 1-156 (351)
164 PRK07843 3-ketosteroid-delta-1 98.9 2E-08 4.4E-13 114.0 17.7 56 104-160 210-270 (557)
165 COG0579 Predicted dehydrogenas 98.9 1.6E-08 3.6E-13 108.9 15.9 151 6-158 3-210 (429)
166 KOG1298|consensus 98.9 1.2E-09 2.6E-14 112.5 6.4 144 5-158 44-207 (509)
167 COG1252 Ndh NADH dehydrogenase 98.9 1.5E-08 3.2E-13 108.4 14.9 105 7-158 4-110 (405)
168 PRK09853 putative selenate red 98.9 4.5E-08 9.7E-13 115.3 19.9 42 355-397 800-842 (1019)
169 PRK06184 hypothetical protein; 98.9 9.8E-09 2.1E-13 115.3 14.1 144 6-158 3-167 (502)
170 PLN02464 glycerol-3-phosphate 98.9 1.2E-08 2.6E-13 117.0 14.7 61 97-158 227-295 (627)
171 PRK06183 mhpA 3-(3-hydroxyphen 98.9 1.2E-08 2.6E-13 115.6 14.2 146 6-158 10-173 (538)
172 PRK05868 hypothetical protein; 98.9 1.1E-08 2.4E-13 110.4 13.1 143 7-158 2-159 (372)
173 TIGR01816 sdhA_forward succina 98.9 1.3E-07 2.7E-12 107.6 22.0 73 102-178 119-197 (565)
174 PRK06126 hypothetical protein; 98.9 4.8E-08 1E-12 110.9 18.3 147 5-158 6-187 (545)
175 TIGR01989 COQ6 Ubiquinone bios 98.9 2.9E-08 6.3E-13 109.5 15.4 151 7-158 1-182 (437)
176 PRK07236 hypothetical protein; 98.9 1.6E-08 3.6E-13 109.6 13.1 140 6-158 6-153 (386)
177 COG3573 Predicted oxidoreducta 98.9 8E-08 1.7E-12 97.4 16.3 151 6-158 5-227 (552)
178 PRK07588 hypothetical protein; 98.9 1.9E-08 4.1E-13 109.3 12.7 141 8-158 2-157 (391)
179 PTZ00318 NADH dehydrogenase-li 98.8 1.3E-07 2.9E-12 103.9 19.4 108 6-159 10-125 (424)
180 KOG0404|consensus 98.8 4.7E-08 1E-12 93.9 13.3 116 7-159 9-124 (322)
181 PRK08244 hypothetical protein; 98.8 3.4E-08 7.4E-13 110.7 14.4 143 7-158 3-158 (493)
182 PRK01747 mnmC bifunctional tRN 98.8 4.7E-08 1E-12 113.4 15.5 60 98-160 404-464 (662)
183 PRK06753 hypothetical protein; 98.8 2.4E-08 5.2E-13 107.6 12.1 141 8-158 2-151 (373)
184 PTZ00367 squalene epoxidase; P 98.8 2.3E-08 5E-13 112.9 12.3 147 5-158 32-218 (567)
185 TIGR01316 gltA glutamate synth 98.8 7.6E-08 1.7E-12 106.5 15.9 34 6-39 133-166 (449)
186 COG0665 DadA Glycine/D-amino a 98.8 3.8E-08 8.2E-13 106.5 13.3 59 98-158 152-211 (387)
187 PF04820 Trp_halogenase: Trypt 98.8 4.5E-08 9.7E-13 108.2 13.8 63 95-158 147-210 (454)
188 PRK08132 FAD-dependent oxidore 98.8 5.4E-08 1.2E-12 110.5 14.6 148 3-158 20-184 (547)
189 PLN02172 flavin-containing mon 98.8 7E-08 1.5E-12 106.7 14.5 145 6-158 10-172 (461)
190 PRK05257 malate:quinone oxidor 98.8 1.3E-07 2.9E-12 105.4 16.4 61 98-158 179-245 (494)
191 PRK13339 malate:quinone oxidor 98.8 9E-08 1.9E-12 106.2 14.1 60 98-158 180-246 (497)
192 PRK11749 dihydropyrimidine deh 98.7 2.9E-07 6.3E-12 102.2 17.6 34 6-39 140-173 (457)
193 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 7.7E-08 1.7E-12 104.6 12.8 146 7-158 3-162 (390)
194 PRK06996 hypothetical protein; 98.7 1.1E-07 2.4E-12 103.6 13.5 146 5-157 10-172 (398)
195 PRK06475 salicylate hydroxylas 98.7 8.6E-08 1.9E-12 104.6 12.5 144 7-158 3-166 (400)
196 COG0578 GlpA Glycerol-3-phosph 98.7 1.3E-07 2.7E-12 104.2 13.4 152 5-158 11-224 (532)
197 PRK08243 4-hydroxybenzoate 3-m 98.7 9.6E-08 2.1E-12 103.9 12.6 145 7-158 3-162 (392)
198 PRK07538 hypothetical protein; 98.7 9.4E-08 2E-12 104.7 12.5 142 8-158 2-164 (413)
199 PRK12769 putative oxidoreducta 98.7 2.9E-07 6.2E-12 106.7 16.7 34 6-39 327-360 (654)
200 TIGR01320 mal_quin_oxido malat 98.7 2.3E-07 4.9E-12 103.4 15.2 60 98-158 174-239 (483)
201 PRK08294 phenol 2-monooxygenas 98.7 1.7E-07 3.7E-12 107.8 14.6 152 1-158 27-209 (634)
202 PTZ00052 thioredoxin reductase 98.7 2.7E-07 5.9E-12 103.4 15.4 33 6-38 5-37 (499)
203 PRK12810 gltD glutamate syntha 98.7 6.4E-07 1.4E-11 99.8 17.7 45 356-401 424-469 (471)
204 PTZ00153 lipoamide dehydrogena 98.6 1.2E-07 2.7E-12 108.5 11.3 47 5-51 115-165 (659)
205 PRK12814 putative NADPH-depend 98.6 6.4E-07 1.4E-11 103.6 16.5 45 357-402 461-506 (652)
206 PRK14989 nitrite reductase sub 98.6 1E-06 2.2E-11 104.2 18.2 105 8-160 5-114 (847)
207 PLN02927 antheraxanthin epoxid 98.6 7.9E-07 1.7E-11 101.5 15.7 148 5-159 80-248 (668)
208 COG1148 HdrA Heterodisulfide r 98.6 1.2E-06 2.6E-11 93.2 15.5 39 357-396 506-544 (622)
209 TIGR03219 salicylate_mono sali 98.6 7.7E-07 1.7E-11 97.5 14.8 141 8-158 2-158 (414)
210 PF07992 Pyr_redox_2: Pyridine 98.6 1.1E-07 2.5E-12 92.8 6.9 31 8-38 1-31 (201)
211 KOG2853|consensus 98.5 8.5E-07 1.8E-11 90.3 12.7 154 3-158 83-319 (509)
212 PRK12809 putative oxidoreducta 98.5 1.5E-06 3.2E-11 100.5 15.7 34 6-39 310-343 (639)
213 TIGR02730 carot_isom carotene 98.5 8.6E-07 1.9E-11 99.4 13.1 55 103-158 230-285 (493)
214 KOG2614|consensus 98.5 9.2E-07 2E-11 93.1 12.1 142 7-158 3-162 (420)
215 PF00732 GMC_oxred_N: GMC oxid 98.5 7.9E-07 1.7E-11 92.7 11.5 53 105-158 196-257 (296)
216 TIGR01789 lycopene_cycl lycope 98.5 1.2E-06 2.6E-11 94.5 13.1 133 8-158 1-137 (370)
217 TIGR01317 GOGAT_sm_gam glutama 98.5 4.9E-06 1.1E-10 93.0 18.1 46 355-401 437-483 (485)
218 PRK13984 putative oxidoreducta 98.5 2.7E-06 5.8E-11 97.9 16.3 44 354-398 560-603 (604)
219 COG2072 TrkA Predicted flavopr 98.4 1.8E-06 3.9E-11 95.2 13.3 132 5-161 7-146 (443)
220 KOG1399|consensus 98.4 1.4E-06 3.1E-11 95.1 12.3 137 7-158 7-152 (448)
221 PRK09897 hypothetical protein; 98.4 4.5E-06 9.7E-11 93.6 16.5 145 7-158 2-165 (534)
222 PF13454 NAD_binding_9: FAD-NA 98.4 2E-06 4.2E-11 81.1 10.9 138 10-157 1-155 (156)
223 KOG4254|consensus 98.4 6.4E-06 1.4E-10 87.1 14.9 56 103-158 265-320 (561)
224 PRK12771 putative glutamate sy 98.4 5.8E-06 1.3E-10 94.3 16.1 44 357-401 404-448 (564)
225 KOG4716|consensus 98.4 5.2E-06 1.1E-10 84.6 13.3 141 5-160 18-174 (503)
226 TIGR03378 glycerol3P_GlpB glyc 98.4 1.4E-05 2.9E-10 86.5 17.3 56 102-158 263-321 (419)
227 KOG2415|consensus 98.3 1.6E-06 3.5E-11 90.5 9.0 151 5-158 75-255 (621)
228 KOG2844|consensus 98.3 2.6E-06 5.6E-11 93.7 10.9 153 6-160 39-244 (856)
229 COG3634 AhpF Alkyl hydroperoxi 98.3 5.9E-07 1.3E-11 91.7 5.5 110 6-158 211-324 (520)
230 PF00070 Pyr_redox: Pyridine n 98.3 9.5E-06 2.1E-10 67.3 11.9 78 9-143 2-80 (80)
231 COG3380 Predicted NAD/FAD-depe 98.3 1.1E-06 2.5E-11 87.1 7.1 135 8-158 3-159 (331)
232 PRK05329 anaerobic glycerol-3- 98.3 4.2E-05 9.1E-10 83.5 18.7 56 103-159 260-318 (422)
233 PRK07233 hypothetical protein; 98.3 1.2E-05 2.7E-10 88.2 14.8 53 103-157 199-252 (434)
234 COG3075 GlpB Anaerobic glycero 98.3 1.6E-05 3.5E-10 81.1 14.0 55 104-158 260-316 (421)
235 PRK13977 myosin-cross-reactive 98.2 1.6E-05 3.4E-10 88.8 14.9 59 102-161 226-295 (576)
236 PF00743 FMO-like: Flavin-bind 98.2 3.2E-06 7E-11 95.0 9.0 140 8-160 3-151 (531)
237 TIGR03169 Nterm_to_SelD pyridi 98.2 8E-06 1.7E-10 87.8 10.4 104 8-159 1-107 (364)
238 TIGR03315 Se_ygfK putative sel 98.1 6.2E-06 1.3E-10 98.0 9.2 34 6-39 537-570 (1012)
239 PRK09564 coenzyme A disulfide 98.1 1.1E-05 2.3E-10 89.3 10.3 108 8-159 2-115 (444)
240 PRK09754 phenylpropionate diox 98.1 1.4E-05 3E-10 87.1 10.5 106 7-159 4-112 (396)
241 PF13450 NAD_binding_8: NAD(P) 98.1 4.4E-06 9.5E-11 67.0 4.6 33 11-43 1-33 (68)
242 KOG0405|consensus 98.1 3.4E-05 7.3E-10 79.2 11.9 140 5-158 19-164 (478)
243 KOG2852|consensus 98.0 9.2E-06 2E-10 81.3 7.0 156 7-162 11-211 (380)
244 PRK13512 coenzyme A disulfide 98.0 2.2E-05 4.7E-10 86.8 10.8 31 8-38 3-35 (438)
245 TIGR01810 betA choline dehydro 98.0 3.1E-05 6.8E-10 87.7 12.2 48 112-159 203-255 (532)
246 PRK08255 salicylyl-CoA 5-hydro 98.0 1.2E-05 2.7E-10 94.6 8.8 129 8-159 2-141 (765)
247 PF06039 Mqo: Malate:quinone o 98.0 0.00019 4.1E-09 77.3 16.6 60 99-158 178-243 (488)
248 COG1233 Phytoene dehydrogenase 98.0 5E-06 1.1E-10 93.0 5.1 55 102-157 224-279 (487)
249 TIGR01350 lipoamide_DH dihydro 97.9 0.00012 2.6E-09 81.4 14.1 95 7-158 171-268 (461)
250 KOG3851|consensus 97.9 5E-06 1.1E-10 84.2 2.5 46 356-401 317-365 (446)
251 PRK09754 phenylpropionate diox 97.9 7.7E-05 1.7E-09 81.3 11.9 95 7-158 145-240 (396)
252 PRK04965 NADH:flavorubredoxin 97.9 9.7E-05 2.1E-09 79.9 12.5 96 7-158 142-238 (377)
253 PF13434 K_oxygenase: L-lysine 97.9 9.5E-05 2.1E-09 78.7 12.0 145 6-158 2-158 (341)
254 PRK06116 glutathione reductase 97.9 0.00017 3.7E-09 80.0 13.7 96 7-158 168-264 (450)
255 PRK07251 pyridine nucleotide-d 97.8 0.00017 3.8E-09 79.6 13.6 94 7-158 158-252 (438)
256 PRK05976 dihydrolipoamide dehy 97.8 0.00018 3.8E-09 80.4 13.7 96 7-158 181-280 (472)
257 PLN02785 Protein HOTHEAD 97.8 0.00016 3.4E-09 82.6 13.3 34 5-39 54-87 (587)
258 PRK06416 dihydrolipoamide dehy 97.8 0.00022 4.8E-09 79.3 14.0 95 7-158 173-271 (462)
259 PLN02852 ferredoxin-NADP+ redu 97.8 5.2E-05 1.1E-09 84.2 8.6 35 6-40 26-62 (491)
260 TIGR01421 gluta_reduc_1 glutat 97.8 0.00023 4.9E-09 79.0 13.8 96 7-158 167-264 (450)
261 PRK04965 NADH:flavorubredoxin 97.8 0.00014 3E-09 78.7 11.8 105 7-159 3-111 (377)
262 PRK05249 soluble pyridine nucl 97.8 0.00025 5.4E-09 78.9 13.7 95 7-158 176-271 (461)
263 PRK06567 putative bifunctional 97.8 4.6E-05 1E-09 89.4 7.9 33 6-38 383-415 (1028)
264 PRK12770 putative glutamate sy 97.8 6E-05 1.3E-09 80.8 8.3 33 7-39 19-51 (352)
265 KOG2960|consensus 97.8 4.1E-05 8.8E-10 73.4 5.8 134 7-157 77-232 (328)
266 TIGR02374 nitri_red_nirB nitri 97.8 7.8E-05 1.7E-09 88.2 9.6 104 9-159 1-108 (785)
267 COG1249 Lpd Pyruvate/2-oxoglut 97.7 0.00035 7.5E-09 76.9 13.7 94 8-158 175-271 (454)
268 PTZ00363 rab-GDP dissociation 97.7 2.8E-05 6.1E-10 85.5 5.0 41 3-43 1-41 (443)
269 PRK07208 hypothetical protein; 97.7 4.1E-05 8.9E-10 85.6 6.0 38 6-43 4-41 (479)
270 KOG0042|consensus 97.7 2.6E-05 5.6E-10 84.3 3.7 35 5-39 66-100 (680)
271 TIGR01424 gluta_reduc_2 glutat 97.7 0.0004 8.7E-09 77.0 13.4 94 8-158 168-262 (446)
272 PRK07845 flavoprotein disulfid 97.7 0.00046 9.9E-09 76.9 13.8 94 8-158 179-273 (466)
273 TIGR00031 UDP-GALP_mutase UDP- 97.7 4.7E-05 1E-09 81.9 5.6 38 6-43 1-38 (377)
274 PLN02507 glutathione reductase 97.7 0.00044 9.6E-09 77.7 13.2 95 7-158 204-299 (499)
275 TIGR02053 MerA mercuric reduct 97.7 0.00058 1.3E-08 76.0 14.0 95 7-158 167-265 (463)
276 TIGR02374 nitri_red_nirB nitri 97.7 0.00034 7.3E-09 82.8 12.7 98 7-160 141-239 (785)
277 TIGR01423 trypano_reduc trypan 97.6 0.00043 9.3E-09 77.4 12.7 96 7-158 188-287 (486)
278 PRK06912 acoL dihydrolipoamide 97.6 0.0006 1.3E-08 75.8 13.7 94 7-158 171-267 (458)
279 PRK07818 dihydrolipoamide dehy 97.6 0.00066 1.4E-08 75.6 13.8 95 7-158 173-272 (466)
280 COG0446 HcaD Uncharacterized N 97.6 0.00044 9.6E-09 75.0 11.9 97 7-158 137-236 (415)
281 PRK07846 mycothione reductase; 97.6 0.00069 1.5E-08 75.2 13.4 94 7-158 167-261 (451)
282 PRK14989 nitrite reductase sub 97.6 0.00045 9.7E-09 82.1 12.4 99 8-161 147-247 (847)
283 KOG3855|consensus 97.6 0.0002 4.3E-09 75.4 8.2 192 6-199 36-259 (481)
284 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.00038 8.3E-09 75.4 11.0 62 97-161 130-192 (381)
285 PRK06370 mercuric reductase; V 97.6 0.00084 1.8E-08 74.8 13.9 95 7-158 172-270 (463)
286 PLN02576 protoporphyrinogen ox 97.6 8.9E-05 1.9E-09 83.2 5.7 39 5-44 11-50 (496)
287 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.00068 1.5E-08 74.6 12.6 94 7-158 138-232 (427)
288 PRK11883 protoporphyrinogen ox 97.5 0.0001 2.2E-09 81.5 5.9 37 8-44 2-40 (451)
289 PRK06115 dihydrolipoamide dehy 97.5 0.001 2.2E-08 74.2 13.6 95 7-158 175-275 (466)
290 TIGR02733 desat_CrtD C-3',4' d 97.5 9.3E-05 2E-09 83.0 5.3 56 102-158 232-293 (492)
291 PRK06327 dihydrolipoamide dehy 97.5 0.0011 2.3E-08 74.2 13.7 95 7-158 184-283 (475)
292 COG4529 Uncharacterized protei 97.5 0.00078 1.7E-08 72.9 11.9 147 6-158 1-163 (474)
293 PRK08010 pyridine nucleotide-d 97.5 0.0011 2.3E-08 73.4 13.6 93 8-158 160-253 (441)
294 KOG0029|consensus 97.5 0.0001 2.2E-09 82.1 5.3 38 6-44 15-52 (501)
295 PRK09564 coenzyme A disulfide 97.5 0.00083 1.8E-08 74.3 12.5 95 7-158 150-245 (444)
296 TIGR02734 crtI_fam phytoene de 97.5 8.7E-05 1.9E-09 83.5 4.5 55 102-157 219-274 (502)
297 TIGR00562 proto_IX_ox protopor 97.5 0.00011 2.4E-09 81.7 4.9 39 6-44 2-44 (462)
298 PRK14727 putative mercuric red 97.5 0.0011 2.4E-08 74.1 12.9 92 8-158 190-282 (479)
299 PRK13512 coenzyme A disulfide 97.5 0.00079 1.7E-08 74.4 11.6 90 8-158 150-240 (438)
300 PRK14694 putative mercuric red 97.4 0.0015 3.3E-08 72.8 13.4 93 7-158 179-272 (468)
301 TIGR03140 AhpF alkyl hydropero 97.4 0.00086 1.9E-08 75.7 11.5 91 7-158 353-449 (515)
302 PTZ00052 thioredoxin reductase 97.4 0.0014 2.9E-08 73.8 13.0 93 8-158 184-277 (499)
303 PTZ00058 glutathione reductase 97.4 0.0013 2.8E-08 74.7 12.7 95 7-158 238-335 (561)
304 PLN02676 polyamine oxidase 97.4 0.0002 4.3E-09 80.1 6.1 43 1-43 21-64 (487)
305 PLN02268 probable polyamine ox 97.4 0.00019 4.1E-09 79.2 5.5 37 8-44 2-38 (435)
306 TIGR03452 mycothione_red mycot 97.4 0.0017 3.8E-08 72.0 13.0 94 7-158 170-264 (452)
307 COG0493 GltD NADPH-dependent g 97.3 0.00028 6E-09 77.7 6.1 33 7-39 124-156 (457)
308 PLN02546 glutathione reductase 97.3 0.0019 4E-08 73.4 12.9 96 7-158 253-349 (558)
309 PRK10262 thioredoxin reductase 97.3 0.0017 3.8E-08 68.5 11.8 92 8-157 148-246 (321)
310 PTZ00318 NADH dehydrogenase-li 97.3 0.0015 3.3E-08 71.9 11.8 89 8-157 175-278 (424)
311 TIGR02352 thiamin_ThiO glycine 97.3 0.0023 5E-08 67.6 12.8 59 98-158 133-192 (337)
312 PRK13748 putative mercuric red 97.3 0.0016 3.6E-08 74.3 12.4 93 7-158 271-364 (561)
313 PRK02106 choline dehydrogenase 97.3 0.00022 4.7E-09 81.4 5.1 48 114-161 212-264 (560)
314 PRK06467 dihydrolipoamide dehy 97.3 0.0026 5.6E-08 71.0 13.6 94 7-158 175-273 (471)
315 PLN02568 polyamine oxidase 97.3 0.00026 5.7E-09 80.0 5.6 42 1-43 1-47 (539)
316 PRK12416 protoporphyrinogen ox 97.3 0.00028 6.2E-09 78.5 5.7 38 7-44 2-45 (463)
317 TIGR01438 TGR thioredoxin and 97.3 0.0021 4.6E-08 72.0 12.6 93 8-158 182-278 (484)
318 COG1231 Monoamine oxidase [Ami 97.3 0.00024 5.3E-09 76.2 4.7 43 5-48 6-48 (450)
319 KOG1238|consensus 97.3 0.00092 2E-08 74.7 8.9 35 5-39 56-91 (623)
320 TIGR03377 glycerol3P_GlpA glyc 97.2 0.0034 7.4E-08 70.9 12.9 62 96-158 122-189 (516)
321 KOG2403|consensus 97.2 0.00067 1.5E-08 73.8 6.6 34 6-39 55-88 (642)
322 COG1252 Ndh NADH dehydrogenase 97.2 0.0015 3.2E-08 70.5 9.0 91 7-158 156-261 (405)
323 COG0562 Glf UDP-galactopyranos 97.2 0.00048 1.1E-08 70.4 5.0 38 6-43 1-38 (374)
324 COG3349 Uncharacterized conser 97.2 0.00041 8.9E-09 75.7 4.8 37 8-44 2-38 (485)
325 PRK06292 dihydrolipoamide dehy 97.1 0.0045 9.9E-08 68.8 13.1 95 7-158 170-267 (460)
326 TIGR02731 phytoene_desat phyto 97.1 0.00052 1.1E-08 76.2 5.2 33 8-40 1-33 (453)
327 PTZ00153 lipoamide dehydrogena 97.1 0.0054 1.2E-07 70.8 13.2 31 8-38 314-344 (659)
328 PRK15317 alkyl hydroperoxide r 97.1 0.0025 5.5E-08 72.0 10.4 89 8-157 353-447 (517)
329 KOG1336|consensus 97.1 0.004 8.6E-08 67.2 11.1 100 7-161 214-315 (478)
330 TIGR02462 pyranose_ox pyranose 97.0 0.00062 1.3E-08 76.5 5.0 33 7-39 1-33 (544)
331 TIGR01318 gltD_gamma_fam gluta 97.0 0.0013 2.7E-08 73.4 7.2 40 6-45 141-180 (467)
332 PLN02328 lysine-specific histo 97.0 0.00098 2.1E-08 77.9 5.8 37 6-43 238-274 (808)
333 TIGR01292 TRX_reduct thioredox 96.9 0.0043 9.4E-08 64.3 10.1 89 7-157 142-236 (300)
334 COG2303 BetA Choline dehydroge 96.9 0.0007 1.5E-08 76.7 4.3 56 108-163 208-270 (542)
335 COG1232 HemY Protoporphyrinoge 96.9 0.00081 1.8E-08 73.4 4.6 37 8-44 2-40 (444)
336 PLN02529 lysine-specific histo 96.9 0.001 2.2E-08 77.4 5.4 34 6-39 160-193 (738)
337 KOG2665|consensus 96.9 0.0043 9.3E-08 63.4 9.0 35 5-39 47-83 (453)
338 TIGR01316 gltA glutamate synth 96.8 0.0047 1E-07 68.5 9.8 31 8-38 274-304 (449)
339 TIGR02732 zeta_caro_desat caro 96.8 0.0012 2.5E-08 73.8 5.0 54 104-158 221-283 (474)
340 PF13434 K_oxygenase: L-lysine 96.8 0.012 2.5E-07 62.8 12.0 136 6-157 190-339 (341)
341 TIGR03169 Nterm_to_SelD pyridi 96.7 0.011 2.3E-07 63.6 11.2 88 8-157 147-241 (364)
342 COG1251 NirB NAD(P)H-nitrite r 96.7 0.0046 1E-07 69.9 8.4 97 9-161 148-245 (793)
343 PLN02487 zeta-carotene desatur 96.7 0.002 4.3E-08 73.1 5.3 37 7-43 76-112 (569)
344 PLN02612 phytoene desaturase 96.6 0.0024 5.3E-08 72.9 5.4 53 104-157 310-364 (567)
345 PTZ00188 adrenodoxin reductase 96.6 0.003 6.4E-08 69.7 5.6 37 7-43 40-77 (506)
346 PRK12810 gltD glutamate syntha 96.5 0.014 3E-07 65.2 10.9 31 8-38 283-314 (471)
347 PRK11749 dihydropyrimidine deh 96.5 0.016 3.5E-07 64.4 11.1 43 357-400 412-455 (457)
348 PRK12831 putative oxidoreducta 96.5 0.019 4.2E-07 63.9 11.6 32 7-38 282-313 (464)
349 COG1251 NirB NAD(P)H-nitrite r 96.3 0.034 7.4E-07 63.2 11.9 44 351-395 258-306 (793)
350 KOG1276|consensus 96.3 0.005 1.1E-07 65.5 5.0 40 7-46 12-53 (491)
351 PLN03000 amine oxidase 96.2 0.0056 1.2E-07 71.9 5.6 38 6-43 184-221 (881)
352 PF00996 GDI: GDP dissociation 96.2 0.0078 1.7E-07 65.8 6.0 37 3-39 1-37 (438)
353 COG2907 Predicted NAD/FAD-bind 96.2 0.0051 1.1E-07 63.7 4.1 38 5-43 7-44 (447)
354 PRK12770 putative glutamate sy 96.1 0.021 4.5E-07 61.2 9.1 31 8-38 174-205 (352)
355 PLN02976 amine oxidase 96.1 0.0068 1.5E-07 73.8 5.6 39 6-44 693-731 (1713)
356 KOG3923|consensus 96.0 0.015 3.2E-07 59.2 6.3 47 99-158 148-194 (342)
357 KOG1335|consensus 95.9 0.035 7.7E-07 58.3 8.8 95 8-158 213-313 (506)
358 COG3486 IucD Lysine/ornithine 95.8 0.082 1.8E-06 56.3 11.3 140 5-158 4-156 (436)
359 TIGR03143 AhpF_homolog putativ 95.8 0.04 8.6E-07 62.9 9.9 32 7-38 144-175 (555)
360 KOG2755|consensus 95.7 0.039 8.5E-07 55.2 8.0 30 9-38 2-33 (334)
361 PRK12778 putative bifunctional 95.7 0.072 1.6E-06 63.1 12.0 31 8-38 572-603 (752)
362 COG3634 AhpF Alkyl hydroperoxi 95.6 0.041 8.8E-07 57.1 7.7 76 6-142 354-430 (520)
363 PRK13984 putative oxidoreducta 95.3 0.14 3E-06 59.1 12.2 30 7-36 419-454 (604)
364 PRK12779 putative bifunctional 95.3 0.094 2E-06 63.3 11.0 31 8-38 449-479 (944)
365 TIGR01372 soxA sarcosine oxida 95.3 0.1 2.3E-06 63.5 11.5 89 7-160 318-412 (985)
366 KOG0685|consensus 95.2 0.023 5E-07 61.4 5.0 38 6-44 21-59 (498)
367 TIGR01318 gltD_gamma_fam gluta 95.1 0.18 3.9E-06 56.3 11.7 32 7-38 283-315 (467)
368 PRK12769 putative oxidoreducta 95.0 0.16 3.4E-06 59.2 11.5 42 357-399 612-654 (654)
369 PRK09853 putative selenate red 94.6 0.2 4.3E-06 60.3 11.1 32 7-38 669-702 (1019)
370 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.041 8.9E-07 51.8 4.2 30 9-38 2-31 (157)
371 PRK12814 putative NADPH-depend 94.5 0.3 6.6E-06 56.8 12.0 32 7-38 324-356 (652)
372 KOG1336|consensus 94.4 0.12 2.6E-06 56.1 7.9 40 116-158 140-180 (478)
373 PF06100 Strep_67kDa_ant: Stre 94.4 1.1 2.5E-05 49.3 15.2 37 7-43 3-43 (500)
374 COG0492 TrxB Thioredoxin reduc 94.2 0.25 5.3E-06 51.8 9.4 88 7-157 144-236 (305)
375 KOG0399|consensus 94.1 0.076 1.7E-06 62.4 5.8 38 6-44 1785-1822(2142)
376 TIGR01317 GOGAT_sm_gam glutama 94.1 0.41 8.9E-06 53.7 11.7 31 8-38 285-316 (485)
377 KOG1800|consensus 93.9 0.069 1.5E-06 56.2 4.5 38 7-44 21-60 (468)
378 PRK12775 putative trifunctiona 93.8 0.44 9.4E-06 58.2 11.9 32 7-38 572-604 (1006)
379 PF02737 3HCDH_N: 3-hydroxyacy 93.7 0.082 1.8E-06 51.0 4.5 30 9-38 2-31 (180)
380 TIGR03315 Se_ygfK putative sel 93.2 0.76 1.7E-05 55.6 12.4 32 7-38 667-700 (1012)
381 PF00743 FMO-like: Flavin-bind 93.2 0.31 6.7E-06 55.2 8.6 32 7-38 184-215 (531)
382 KOG1346|consensus 93.1 0.28 6.1E-06 52.2 7.5 49 110-160 401-450 (659)
383 COG0446 HcaD Uncharacterized N 93.0 0.41 9E-06 51.7 9.2 42 116-161 66-108 (415)
384 PF02558 ApbA: Ketopantoate re 93.0 0.13 2.8E-06 47.7 4.5 30 9-38 1-30 (151)
385 PRK12809 putative oxidoreducta 92.8 0.79 1.7E-05 53.3 11.5 42 357-399 595-637 (639)
386 KOG2495|consensus 92.3 0.62 1.3E-05 50.1 8.9 109 6-158 55-169 (491)
387 TIGR02485 CobZ_N-term precorri 92.3 0.13 2.7E-06 56.8 4.0 37 361-397 385-431 (432)
388 PRK12842 putative succinate de 92.3 0.11 2.5E-06 59.4 3.8 43 1-43 4-46 (574)
389 COG5044 MRS6 RAB proteins gera 92.2 0.26 5.7E-06 51.8 5.8 38 1-38 1-38 (434)
390 PRK07819 3-hydroxybutyryl-CoA 92.1 0.2 4.4E-06 52.0 5.0 38 1-39 1-38 (286)
391 PF03721 UDPG_MGDP_dh_N: UDP-g 92.0 0.15 3.2E-06 49.5 3.6 31 8-38 2-32 (185)
392 PRK06249 2-dehydropantoate 2-r 91.9 0.21 4.5E-06 52.6 5.0 37 1-38 1-37 (313)
393 PRK08293 3-hydroxybutyryl-CoA 91.6 0.24 5.1E-06 51.5 4.9 31 8-38 5-35 (287)
394 PRK01438 murD UDP-N-acetylmura 91.4 0.2 4.3E-06 56.1 4.4 32 7-38 17-48 (480)
395 PRK06567 putative bifunctional 91.4 1.2 2.5E-05 53.5 10.7 31 7-37 551-584 (1028)
396 PRK14106 murD UDP-N-acetylmura 91.3 0.26 5.6E-06 54.7 5.1 37 1-38 1-37 (450)
397 COG0686 Ald Alanine dehydrogen 91.3 0.12 2.6E-06 53.0 2.2 33 7-39 169-201 (371)
398 PRK05808 3-hydroxybutyryl-CoA 91.2 0.28 6E-06 50.8 4.9 35 1-38 1-35 (282)
399 PRK08229 2-dehydropantoate 2-r 91.1 0.26 5.5E-06 52.5 4.7 31 8-38 4-34 (341)
400 PRK05708 2-dehydropantoate 2-r 90.9 0.28 6.2E-06 51.4 4.7 31 8-38 4-34 (305)
401 PTZ00082 L-lactate dehydrogena 90.9 0.35 7.5E-06 51.2 5.4 39 1-39 1-40 (321)
402 PRK02705 murD UDP-N-acetylmura 90.9 0.24 5.3E-06 55.0 4.4 31 8-38 2-32 (459)
403 PRK07530 3-hydroxybutyryl-CoA 90.6 0.35 7.5E-06 50.4 5.0 32 7-38 5-36 (292)
404 KOG2495|consensus 90.6 0.94 2E-05 48.7 8.1 50 105-158 276-328 (491)
405 KOG1346|consensus 90.6 0.42 9.2E-06 50.9 5.4 133 5-161 177-313 (659)
406 PRK06129 3-hydroxyacyl-CoA deh 90.4 0.31 6.8E-06 51.2 4.4 31 8-38 4-34 (308)
407 KOG1439|consensus 90.3 0.18 3.9E-06 53.5 2.5 36 4-39 2-37 (440)
408 KOG4405|consensus 90.3 0.33 7.2E-06 51.6 4.3 36 4-39 6-41 (547)
409 PRK12834 putative FAD-binding 90.2 0.24 5.1E-06 56.5 3.6 34 361-394 502-548 (549)
410 PRK06035 3-hydroxyacyl-CoA deh 90.0 0.41 8.9E-06 49.8 4.9 31 8-38 5-35 (291)
411 PF01262 AlaDh_PNT_C: Alanine 89.9 0.42 9E-06 45.5 4.4 32 7-38 21-52 (168)
412 PF13241 NAD_binding_7: Putati 89.8 0.31 6.8E-06 42.3 3.3 33 6-38 7-39 (103)
413 PRK12771 putative glutamate sy 89.8 2.3 5E-05 48.7 11.2 32 7-38 268-300 (564)
414 TIGR02354 thiF_fam2 thiamine b 89.7 0.47 1E-05 46.6 4.7 32 7-38 22-54 (200)
415 PRK09260 3-hydroxybutyryl-CoA 89.6 0.42 9.1E-06 49.7 4.6 31 8-38 3-33 (288)
416 COG0569 TrkA K+ transport syst 89.4 0.45 9.7E-06 47.6 4.4 31 8-38 2-32 (225)
417 TIGR03385 CoA_CoA_reduc CoA-di 89.3 0.89 1.9E-05 50.0 7.2 43 116-159 57-103 (427)
418 TIGR01470 cysG_Nterm siroheme 89.2 0.49 1.1E-05 46.6 4.5 32 7-38 10-41 (205)
419 PRK12843 putative FAD-binding 89.2 0.33 7.1E-06 55.8 3.7 41 3-43 13-53 (578)
420 PF01488 Shikimate_DH: Shikima 89.1 0.68 1.5E-05 42.3 5.1 33 6-38 12-45 (135)
421 PRK12835 3-ketosteroid-delta-1 88.9 0.35 7.6E-06 55.5 3.7 55 105-160 216-276 (584)
422 PRK07066 3-hydroxybutyryl-CoA 88.8 0.49 1.1E-05 49.9 4.4 31 8-38 9-39 (321)
423 PF01593 Amino_oxidase: Flavin 88.8 0.41 8.8E-06 51.6 4.0 41 117-158 223-264 (450)
424 PRK15116 sulfur acceptor prote 88.6 0.6 1.3E-05 47.9 4.8 32 7-38 31-63 (268)
425 PRK12921 2-dehydropantoate 2-r 88.5 0.51 1.1E-05 49.2 4.4 30 8-37 2-31 (305)
426 PRK11064 wecC UDP-N-acetyl-D-m 88.4 0.54 1.2E-05 51.6 4.6 35 1-38 1-35 (415)
427 PRK06522 2-dehydropantoate 2-r 88.3 0.54 1.2E-05 49.0 4.4 31 8-38 2-32 (304)
428 PRK06130 3-hydroxybutyryl-CoA 88.2 0.66 1.4E-05 48.7 5.0 32 7-38 5-36 (311)
429 PRK14618 NAD(P)H-dependent gly 88.1 0.68 1.5E-05 49.1 5.0 32 7-38 5-36 (328)
430 TIGR02734 crtI_fam phytoene de 88.1 1.6 3.5E-05 49.1 8.3 35 9-43 1-35 (502)
431 TIGR00518 alaDH alanine dehydr 88.1 0.57 1.2E-05 50.6 4.5 32 7-38 168-199 (370)
432 PRK06719 precorrin-2 dehydroge 87.8 0.74 1.6E-05 43.3 4.5 31 7-37 14-44 (157)
433 KOG2304|consensus 87.5 0.58 1.2E-05 46.0 3.6 36 4-39 9-44 (298)
434 PRK06718 precorrin-2 dehydroge 87.3 0.8 1.7E-05 45.0 4.6 32 7-38 11-42 (202)
435 PRK12845 3-ketosteroid-delta-1 87.0 0.56 1.2E-05 53.6 3.8 36 4-40 14-49 (564)
436 cd05292 LDH_2 A subgroup of L- 86.9 0.76 1.7E-05 48.3 4.5 32 8-39 2-35 (308)
437 PRK00066 ldh L-lactate dehydro 86.8 1 2.2E-05 47.5 5.4 38 1-38 1-40 (315)
438 PRK07843 3-ketosteroid-delta-1 86.8 0.48 1E-05 54.1 3.1 37 4-40 5-41 (557)
439 PRK09424 pntA NAD(P) transhydr 86.8 0.73 1.6E-05 51.6 4.4 32 7-38 166-197 (509)
440 PF00899 ThiF: ThiF family; I 86.7 0.67 1.4E-05 42.2 3.5 32 7-38 3-35 (135)
441 PRK06134 putative FAD-binding 86.6 0.57 1.2E-05 53.8 3.6 37 3-39 9-45 (581)
442 COG3486 IucD Lysine/ornithine 86.5 3.4 7.4E-05 44.4 8.9 54 104-157 278-338 (436)
443 cd01487 E1_ThiF_like E1_ThiF_l 86.0 1.1 2.3E-05 43.0 4.6 30 9-38 2-32 (174)
444 PLN02545 3-hydroxybutyryl-CoA 85.8 1.1 2.4E-05 46.7 5.0 31 8-38 6-36 (295)
445 cd01483 E1_enzyme_family Super 85.8 1.1 2.4E-05 41.1 4.5 30 9-38 2-32 (143)
446 PRK00094 gpsA NAD(P)H-dependen 85.5 1 2.2E-05 47.4 4.6 31 8-38 3-33 (325)
447 PRK14620 NAD(P)H-dependent gly 85.5 0.94 2E-05 47.9 4.4 31 8-38 2-32 (326)
448 TIGR01763 MalateDH_bact malate 85.5 0.99 2.2E-05 47.4 4.5 31 8-38 3-34 (305)
449 PRK12475 thiamine/molybdopteri 85.4 1.1 2.4E-05 47.7 4.8 32 7-38 25-57 (338)
450 PRK08268 3-hydroxy-acyl-CoA de 85.3 1.2 2.5E-05 50.3 5.1 33 7-39 8-40 (507)
451 PRK12839 hypothetical protein; 84.9 0.67 1.5E-05 53.1 3.1 58 102-160 214-277 (572)
452 PRK12549 shikimate 5-dehydroge 84.8 1.1 2.5E-05 46.4 4.5 32 7-38 128-160 (284)
453 TIGR02356 adenyl_thiF thiazole 84.8 1.4 3E-05 43.3 4.8 32 7-38 22-54 (202)
454 PF13478 XdhC_C: XdhC Rossmann 84.3 0.99 2.1E-05 41.4 3.3 32 9-40 1-32 (136)
455 PRK07688 thiamine/molybdopteri 84.3 1.3 2.9E-05 47.2 4.8 32 7-38 25-57 (339)
456 PRK12837 3-ketosteroid-delta-1 84.2 0.62 1.3E-05 52.6 2.4 34 361-394 467-510 (513)
457 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.7 1.2 2.7E-05 50.0 4.5 32 8-39 7-38 (503)
458 TIGR03736 PRTRC_ThiF PRTRC sys 83.7 1.5 3.3E-05 44.3 4.7 33 6-38 11-54 (244)
459 PRK02472 murD UDP-N-acetylmura 83.4 1.5 3.2E-05 48.6 4.9 37 1-38 1-37 (447)
460 COG1748 LYS9 Saccharopine dehy 83.4 1.4 3E-05 47.5 4.5 32 7-38 2-34 (389)
461 PRK06223 malate dehydrogenase; 83.1 1.6 3.4E-05 45.8 4.8 32 7-38 3-35 (307)
462 PF02254 TrkA_N: TrkA-N domain 83.0 1.8 3.9E-05 37.9 4.5 30 9-38 1-30 (116)
463 TIGR03026 NDP-sugDHase nucleot 83.0 1.3 2.7E-05 48.7 4.1 31 8-38 2-32 (411)
464 PRK08644 thiamine biosynthesis 82.9 1.8 4E-05 42.8 4.9 32 7-38 29-61 (212)
465 PRK11730 fadB multifunctional 82.9 1.3 2.8E-05 52.2 4.4 31 8-38 315-345 (715)
466 PRK04148 hypothetical protein; 82.8 1.1 2.3E-05 40.9 2.9 32 7-39 18-49 (134)
467 cd05311 NAD_bind_2_malic_enz N 82.7 1.8 3.8E-05 43.4 4.7 32 7-38 26-60 (226)
468 cd05291 HicDH_like L-2-hydroxy 82.6 1.5 3.4E-05 45.9 4.5 32 8-39 2-35 (306)
469 cd01339 LDH-like_MDH L-lactate 82.6 1.3 2.8E-05 46.3 3.9 30 9-38 1-31 (300)
470 TIGR02355 moeB molybdopterin s 82.5 1.8 3.8E-05 43.8 4.7 32 7-38 25-57 (240)
471 TIGR02437 FadB fatty oxidation 82.3 1.4 3.1E-05 51.8 4.4 31 8-38 315-345 (714)
472 PRK07531 bifunctional 3-hydrox 82.1 1.8 3.8E-05 48.7 4.9 31 8-38 6-36 (495)
473 cd00401 AdoHcyase S-adenosyl-L 81.8 1.7 3.6E-05 47.5 4.4 32 7-38 203-234 (413)
474 TIGR00561 pntA NAD(P) transhyd 81.8 1.7 3.6E-05 48.7 4.5 32 7-38 165-196 (511)
475 PRK08328 hypothetical protein; 81.7 2 4.3E-05 43.2 4.7 32 7-38 28-60 (231)
476 PRK04308 murD UDP-N-acetylmura 81.1 2.1 4.6E-05 47.3 5.1 37 1-38 1-37 (445)
477 PRK07454 short chain dehydroge 81.0 2.4 5.3E-05 42.1 5.1 38 1-38 1-39 (241)
478 COG1250 FadB 3-hydroxyacyl-CoA 81.0 1.7 3.7E-05 45.4 3.9 31 8-38 5-35 (307)
479 cd01075 NAD_bind_Leu_Phe_Val_D 81.0 2.1 4.7E-05 41.9 4.5 32 7-38 29-60 (200)
480 TIGR01813 flavo_cyto_c flavocy 81.0 0.66 1.4E-05 51.2 1.0 30 361-390 401-439 (439)
481 PLN02353 probable UDP-glucose 80.8 1.9 4.1E-05 48.1 4.5 31 8-38 3-35 (473)
482 PF03446 NAD_binding_2: NAD bi 80.7 2.2 4.9E-05 40.2 4.4 32 7-38 2-33 (163)
483 KOG2404|consensus 80.7 0.53 1.2E-05 48.7 0.1 53 335-392 406-467 (477)
484 TIGR02441 fa_ox_alpha_mit fatt 80.5 1.8 4E-05 51.0 4.5 31 8-38 337-367 (737)
485 PRK05690 molybdopterin biosynt 80.4 2.4 5.1E-05 43.0 4.7 32 7-38 33-65 (245)
486 TIGR02733 desat_CrtD C-3',4' d 80.2 5.4 0.00012 44.7 8.1 37 7-43 2-38 (492)
487 PRK00421 murC UDP-N-acetylmura 80.2 2 4.3E-05 47.8 4.5 38 1-38 2-40 (461)
488 PRK12548 shikimate 5-dehydroge 80.0 2.3 5E-05 44.2 4.6 32 7-38 127-159 (289)
489 cd00757 ThiF_MoeB_HesA_family 79.9 2.5 5.4E-05 42.3 4.7 32 7-38 22-54 (228)
490 PRK14619 NAD(P)H-dependent gly 79.7 2.4 5.2E-05 44.5 4.7 32 7-38 5-36 (308)
491 COG1004 Ugd Predicted UDP-gluc 79.7 1.3 2.8E-05 47.4 2.6 32 8-39 2-33 (414)
492 PLN02172 flavin-containing mon 79.1 1.6 3.5E-05 48.6 3.3 32 7-38 205-236 (461)
493 cd00755 YgdL_like Family of ac 79.1 2.8 6E-05 42.1 4.7 32 7-38 12-44 (231)
494 PRK05562 precorrin-2 dehydroge 78.7 2.6 5.7E-05 42.0 4.3 32 7-38 26-57 (223)
495 PRK11559 garR tartronate semia 78.7 2.7 5.8E-05 43.7 4.7 31 8-38 4-34 (296)
496 cd01484 E1-2_like Ubiquitin ac 78.6 2.7 5.9E-05 42.3 4.4 30 9-38 2-32 (234)
497 PTZ00117 malate dehydrogenase; 78.6 2.9 6.4E-05 44.1 4.9 33 6-38 5-38 (319)
498 PRK08306 dipicolinate synthase 78.2 2.7 5.8E-05 44.0 4.4 32 7-38 153-184 (296)
499 cd01080 NAD_bind_m-THF_DH_Cycl 78.2 3.2 7E-05 39.5 4.6 33 6-38 44-77 (168)
500 PRK15057 UDP-glucose 6-dehydro 78.0 2.5 5.5E-05 45.9 4.3 30 8-38 2-31 (388)
No 1
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-183 Score=1429.80 Aligned_cols=615 Identities=61% Similarity=0.982 Sum_probs=593.3
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
+.||||||||||||++||+++||+|++|+|+..+.+.+|.|+|||++||++++++++|+|++||.|+..+|..+++|++|
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCC-eEEEEEEecceEEEeceEEEecccccCCce
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN-KILGVVTKIGIKFFSKTVILTTGTFLNGKI 163 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~-~v~gV~~~~g~~i~a~~VIlAtG~~~~~~~ 163 (637)
|.++||+||++|+|.|+..|...|++.+++++|+.+++..|.++..+++ +|+||.+.+|..|.|++||++||+|++|++
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 9999999999999999999999999999999999999999999998777 599999999999999999999999999999
Q ss_pred eecccccCCCCccccchHHHHHHHHhcCccceecccCCCCcccccccccchhhcccCCCCCCceeeecCCCcCCCccccc
Q psy9395 164 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSC 243 (637)
Q Consensus 164 ~ig~~~~~~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p~~~~~si~~~~~~~~~~d~~~~~~fs~~~~~~~~~~~~sc 243 (637)
|+|...++.||.|+.++..|+..|.++|++++|+|||||||++++||||++++.|++| .+++.|+|.+ .....|++|
T Consensus 163 ~iG~~~~~aGr~ge~~s~~Ls~~L~~lGf~l~RlKTGTPpRi~~~sIDfs~le~q~gD-~~~~~fs~~~--~~~~~Qi~C 239 (621)
T COG0445 163 HIGDTNYSAGRLGEPPSIGLSDRLRELGFKLGRLKTGTPPRIDARSIDFSKLEEQPGD-EPPPVFSFTT--EPHPPQIPC 239 (621)
T ss_pred EeccccccCCCCCCccchHHHHHHHhcCcEEeeeccCCCCccCCCccChhhhccCcCC-CCCCccccCC--CCCccccce
Confidence 9999999999999999999999999999999999999999999999999999999999 7888899987 256679999
Q ss_pred ccccccccccccccccccccccccccccccCCCCcccHHHHhhccCCCcccccccccCCCCCcceecCcccCCCCHHHHH
Q psy9395 244 FITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQI 323 (637)
Q Consensus 244 ~~t~t~~~~~~ii~~~~~~~~~~~g~~~~~G~r~~psie~~~~~f~~~~~~~~~le~~gl~~~~~~~~g~~~~l~~~~q~ 323 (637)
|+|+|++++|+||+.|++.++||+|.+.|.|||||||||||+.||+++.+||+||||||++++++|+||+|||||+++|.
T Consensus 240 ~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~ 319 (621)
T COG0445 240 YITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQE 319 (621)
T ss_pred eeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCcceEEeccccccccceeCccccCccccccCCCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9395 324 ELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWI 403 (637)
Q Consensus 324 ~~~~~i~gle~a~v~~~G~~~e~~~v~~~~l~~tlesk~v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~~~~~~ 403 (637)
+|+++|||||||+|+|||||||||||+|++|++|||||+|+||||||||||||||+||+|||++||+|||++++|++|++
T Consensus 320 ~~irsipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AGQINGTtGYEEAAaQGliAGiNAal~~~~~~p~i 399 (621)
T COG0445 320 QIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFI 399 (621)
T ss_pred HHHHhCcccccceeeccceeeeecccChhhcccchhhceecceEEcccccCCchhHHHHhhhHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhHHHHhhhcCCCCccccccchHHHhhhcccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy9395 404 PGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKD 483 (637)
Q Consensus 404 ~~r~~~~ig~l~~~l~~~~~~epyrm~tsr~e~rl~~r~dn~~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 483 (637)
+.|++|||||||||||||||+||||||||||||||+||+||||+||||+|+++|||+++||+.|+++++.+++.+++|++
T Consensus 400 l~R~eaYIGVlIDDLvTkGt~EPYRmfTSRAEyRL~LR~DNAd~RLt~~g~~lGLv~~~r~~~f~~k~~~i~~~~~~L~~ 479 (621)
T COG0445 400 LRRDEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDERYERFLKKKENIEEEIERLKS 479 (621)
T ss_pred cccCcceeeeEehhhhcCCCCCchhhcchHHHHHHHhhccchhhhhhHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCccccccccccccccccCcccCHHhhhcCCCCChhhHhcccccCCCCCccccCCcHHHHHHHHHHhhcHHHHHHHH
Q psy9395 484 TWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQI 563 (637)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ll~r~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~veie~kY~gYi~rq~ 563 (637)
++++|++|.. .+......+++...+++|+|+||+++|++|.+++|.... ++++++++||||+||+|||+||+
T Consensus 480 ~~v~p~~~~~-~~~~~~~~~~~~~~~~~~lL~rpe~~~~~l~~~~~~~~~-------~~~~v~eqveieiKY~gYI~rq~ 551 (621)
T COG0445 480 TWVTPSEVAK-ELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPAD-------LDAEVLEQVEIEIKYEGYIKRQQ 551 (621)
T ss_pred eecChHHHHH-HHHHhhcCCcccchhHHHHhcCCCCCHHHHHHhCCcccc-------cCHHHHhHhheehhHHHHHHHHH
Confidence 9999965554 333334445667789999999999999999999984433 78999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCcCccHHHHHHhhccCCCCHHHhhcCCCCCHHHHHHHHHHHhcCc
Q psy9395 564 NEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGF 630 (637)
Q Consensus 564 ~~i~~~~~~e~~~iP~d~dY~~i~~LS~E~~ekL~~~rP~tlgqAsrI~GvtPa~i~~L~~~l~~~~ 630 (637)
++|++++++|+++||+||||+.|+|||+|+||||+++||.||||||||||||||||+.|++||++.+
T Consensus 552 ~~i~~~~~~e~~~IP~~~Dy~~i~~LS~Ea~~KL~~~rP~tigqAsRIsGitpadI~~Ll~~l~~~~ 618 (621)
T COG0445 552 EQIEKLKRLENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISGVTPADISILLVYLKKGK 618 (621)
T ss_pred HHHHHHHHhhcccCCCCcChhhccchhHHHHHHHhhcCCCcHHHhhhcCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999754
No 2
>KOG2311|consensus
Probab=100.00 E-value=5.1e-165 Score=1261.61 Aligned_cols=618 Identities=47% Similarity=0.802 Sum_probs=585.1
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
..|||||||||||||+||.++||.|.+++|+.++.+.+|+|+|||++||++++++++|+|+++|++.+.+|.++++|+++
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCe-----EEEEEEecceEEEeceEEEeccccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNK-----ILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~-----v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
|+++||+||++|+|+|+..|...|++.+...+++.+.++.|.++.+.++. +.||.+.+|..+.|+.||++||+|+
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFL 186 (679)
T ss_pred hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccce
Confidence 99999999999999999999999999999999999999999999876554 8899999999999999999999999
Q ss_pred CCceeecccccCCCCccccchHHHHHHHHhcCccceecccCCCCcccccccccchhhcccCCCCCCceeeecCCCc--CC
Q psy9395 160 NGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNIN--LH 237 (637)
Q Consensus 160 ~~~~~ig~~~~~~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p~~~~~si~~~~~~~~~~d~~~~~~fs~~~~~~--~~ 237 (637)
++.+++|.+.+|.||.|+.++.+|++.|.++||+++|+|||||||+..+||||++++.+.+| .++.+|||++... .+
T Consensus 187 ~~~I~iGlk~~pAGRiGe~ps~~Lse~l~klGF~~gRLKTGTPpRlak~sInfS~le~q~gD-~~p~pfSFln~~v~i~~ 265 (679)
T KOG2311|consen 187 RGQINIGLKTHPAGRIGEQPSIGLSETLQKLGFELGRLKTGTPPRLAKESINFSKLERQIGD-EPPIPFSFLNETVWIEP 265 (679)
T ss_pred eeEEeeccccccCccccCCcchHHHHHHHHhCeeeccccCCCCcccccccCChHHhhhhcCC-CCCCceeccCCccccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999987652 34
Q ss_pred CcccccccccccccccccccccccccccccccccccCCCCcccHHHHhhccCCCcccccccccCCCCCcceecCcccCCC
Q psy9395 238 PKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSL 317 (637)
Q Consensus 238 ~~~~sc~~t~t~~~~~~ii~~~~~~~~~~~g~~~~~G~r~~psie~~~~~f~~~~~~~~~le~~gl~~~~~~~~g~~~~l 317 (637)
..|++||+|+|++.+|+|+++|+|.++++.+... |||||||||+|+.||+++ .|++||||||++++.+||+|+|++|
T Consensus 266 e~ql~cYlt~Tt~~~h~ivr~NLh~~~hv~~~~~--gPRYCPSiEsKilRFp~k-~HqiwLEpEGlDs~~iYpqG~S~tl 342 (679)
T KOG2311|consen 266 EDQLPCYLTHTTPRVHEIVRKNLHENPHVKETTI--GPRYCPSIESKILRFPDK-SHQIWLEPEGLDSDLIYPQGLSNTL 342 (679)
T ss_pred hccCccccccCcHHHHHHHHhhhccCcccccccc--CCccCCcHHHHHhcCccc-cceeeecCcCCCCCcccccccccCC
Confidence 5679999999999999999999999999887654 999999999999999987 9999999999999999999999999
Q ss_pred CHHHHHHHHHhccCCcceEEeccccccccceeCccccCccccccCCCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhC
Q psy9395 318 PFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQ 397 (637)
Q Consensus 318 ~~~~q~~~~~~i~gle~a~v~~~G~~~e~~~v~~~~l~~tlesk~v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~ 397 (637)
|.+.|.+|+++||||||++|.+|||+||||||||+++.+|||||+|+||||||||||||||+||+|||++||+||++.+.
T Consensus 343 pee~Q~~lir~IpGLEn~~i~qP~YgVeYDyv~prQlk~sLeTkkV~GLF~AGQINGTTGYEEAAAQGIiAGiNA~~~a~ 422 (679)
T KOG2311|consen 343 PEELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQLKPSLETKKVQGLFFAGQINGTTGYEEAAAQGIIAGINASLRAS 422 (679)
T ss_pred CHHHHHHHHHhccCcccceeecccccceecccChHHcchhhhhhhccceEEeeeecCccchHHHHhhhhHhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccchhhhhHHHHhhhcCCCCccccccchHHHhhhccccccccccccccc-ccCCCCHHHHHHHHHHHHHHHH
Q psy9395 398 DRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGW-KLGCVSYKQWKIFEKKREIITK 476 (637)
Q Consensus 398 ~~~~~~~~r~~~~ig~l~~~l~~~~~~epyrm~tsr~e~rl~~r~dn~~~r~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 476 (637)
++++++++|+++|||||||||+|+||+||||||||||||||+||+||||.||||+|+ ..||+++.||+.|++++..+++
T Consensus 423 ~~~~~~v~Rte~yIGvLIDDL~t~g~~EPYRMfTSRsEfRLslR~DNAD~RLT~lg~~~~~l~s~~rw~~fq~~k~~l~~ 502 (679)
T KOG2311|consen 423 GKPPVVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRSEFRLSLRPDNADSRLTPLGYKEGGLVSQQRWERFQETKSRLDE 502 (679)
T ss_pred CCCCeeeecccceeEEEehhhhccCCccchhhhcchhhheeeecCCccccccccchhhhcCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred HHHHhhcceeCCcccccccccccccc-ccCcccCHHhhhcCCCCChhhHhcccccCCCCCccccCCcHHHHHHHHHHhhc
Q psy9395 477 ELQRLKDTWINPSILNTGESERVLGK-RIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQY 555 (637)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~ll~r~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~veie~kY 555 (637)
.+++|+++++++.+|.. .++....+ .-+....++|+|++.++++++|....|+.-+ | ..++.+++++++||+||
T Consensus 503 ~~~~lk~~k~s~~~w~~-l~~ia~~s~~~~k~~~a~d~l~~~~~d~~~L~~~~p~~~~---~-~~~~r~~~erl~Ie~kY 577 (679)
T KOG2311|consen 503 GIKRLKEFKLSSQKWKK-LIPIASISTSRSKPVRALDLLKFKDLDLDKLIECHPDPLK---N-LTIPRELAERLKIEGKY 577 (679)
T ss_pred HHHHHHHhhhhHHHHHh-hccccccccccccchhhhhhhccccccHHHHHHhccchhh---c-ccchHHHHhheeeeeee
Confidence 99999999999999976 33333321 1123345999999999999999999886211 1 12679999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCccHHHHHHhhccCCCCHHHhhcCCCCCHHHHHHHHHHHhcCcc
Q psy9395 556 EGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFL 631 (637)
Q Consensus 556 ~gYi~rq~~~i~~~~~~e~~~iP~d~dY~~i~~LS~E~~ekL~~~rP~tlgqAsrI~GvtPa~i~~L~~~l~~~~~ 631 (637)
++||.||+++++.++++|++.||+|+||.++++||.|+||||+++||+||||||||+||||++|..|++|+++...
T Consensus 578 e~~i~rq~q~~q~~~~de~~~lP~D~Dy~tm~~lS~E~rekL~~vrP~TIg~asRI~GvtpaaI~~Llr~v~~~~~ 653 (679)
T KOG2311|consen 578 ESFIVRQQQEKQGVQRDEALQLPDDLDYLTMRTLSLECREKLHRVRPQTIGAASRIQGVTPAAIIRLLRHVKTNQR 653 (679)
T ss_pred hhHHHHHHHHHHHHhHHhhhcCCcccccccccccCHHHHHHhhhcCchhhhhhhhcCCCCHHHHHHHHHHhhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998654
No 3
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=100.00 E-value=1.1e-161 Score=1327.03 Aligned_cols=611 Identities=62% Similarity=0.985 Sum_probs=588.1
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
+|||||||||+||++||+++|+.|++|+|+|++.+.+|.++||++.||.++++++++++++++.+..+++..+++++.+|
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln 83 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLN 83 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecc
Confidence 49999999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccCCceee
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHI 165 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~~~~i 165 (637)
.++||++|+++.++|+..|...+.+.+.+++|+++++++|+++..+++++.+|.+.+|..+.|+.||+|||+|+++.+++
T Consensus 84 ~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g~i~i 163 (618)
T PRK05192 84 TSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLRGKIHI 163 (618)
T ss_pred cCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchhcCeEe
Confidence 99999999999999999999999999998889999999999998888999999999999999999999999999999999
Q ss_pred cccccCCCCccccchHHHHHHHHhcCccceecccCCCCcccccccccchhhcccCCCCCCceeeecCCCcCCCccccccc
Q psy9395 166 GLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFI 245 (637)
Q Consensus 166 g~~~~~~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p~~~~~si~~~~~~~~~~d~~~~~~fs~~~~~~~~~~~~sc~~ 245 (637)
|...++.|+.|..++..|+..|.++|+++.+||||||||++++||||++++.|++| ..+.+|||++.. ....+++||+
T Consensus 164 G~~~~~~Gr~g~~~a~~L~~~l~~~g~~~~r~ktgtppri~~~sid~~~~~~q~~~-~~~~~fs~~~~~-~~~~~~~c~~ 241 (618)
T PRK05192 164 GEKNYSGGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFSKLEEQPGD-DPPPPFSFMTEK-IHPPQVPCYI 241 (618)
T ss_pred cccccCCCcCccccHHHHHHHHHhcCCccceecCCCCceecCCccchhhCceecCC-CCCCCCCCCCCC-CCcCeeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999 889999998653 3457999999
Q ss_pred ccccccccccccccccccccccccccccCCCCcccHHHHhhccCCCcccccccccCCCCCcceecCcccCCCCHHHHHHH
Q psy9395 246 THTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIEL 325 (637)
Q Consensus 246 t~t~~~~~~ii~~~~~~~~~~~g~~~~~G~r~~psie~~~~~f~~~~~~~~~le~~gl~~~~~~~~g~~~~l~~~~q~~~ 325 (637)
|+|+.++|.+|+++++.+++|+|.+.+.|||||||||++++||+++..|++||||||++++++|+||+||+||+++|.++
T Consensus 242 t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~h~v~lepeg~~~~~~y~~G~stslp~~~Q~~~ 321 (618)
T PRK05192 242 TYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDRHQIFLEPEGLDTNEVYPNGISTSLPEDVQLEM 321 (618)
T ss_pred CcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCCceEEEecCCCCCCEEeccCccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcceEEeccccccccceeCccccCccccccCCCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy9395 326 VQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPG 405 (637)
Q Consensus 326 ~~~i~gle~a~v~~~G~~~e~~~v~~~~l~~tlesk~v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~~~~~~~~ 405 (637)
+++|||||||+|+|+||+||||||||++|++|||+|.++|||||||||||+||+||+|||++||+|||++++ ++|++|+
T Consensus 322 ~r~ipGle~a~i~r~gy~ieyd~i~p~~L~~~Le~k~~~~lf~AGQinGt~GYeEaaaqGl~AgiNaa~~~~-~~~~~~~ 400 (618)
T PRK05192 322 LRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQ-GEPFILK 400 (618)
T ss_pred HhcCcCccceeEeecccceeecccChhhcchhheecCCCCeEECcccCCChHHHHHHHHHHHHHHHHHHHhc-CCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccchhhhhHHHHhhhcCCCCccccccchHHHhhhcccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhhcce
Q psy9395 406 RDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTW 485 (637)
Q Consensus 406 r~~~~ig~l~~~l~~~~~~epyrm~tsr~e~rl~~r~dn~~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (637)
|+++||||||||||||||+||||||||||||||+||+||||.||||+|+++|||+++||+.|+++++.+++++++|++++
T Consensus 401 r~~~yiGvliddlvtkg~~EPYRmfTSRaEyRl~lR~DNad~RLt~~g~~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (618)
T PRK05192 401 RSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGYELGLVDDERWARFEEKKEAIEEEIERLKSTR 480 (618)
T ss_pred cchhhHHHHHHHHHhcCCCcchhhcchhhHHHHHhccccHHhHhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCccccccccccccccccCcccCHHhhhcCCCCChhhHhcccccCCCCCccccCCcHHHHHHHHHHhhcHHHHHHHHHH
Q psy9395 486 INPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINE 565 (637)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~s~~~ll~r~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~veie~kY~gYi~rq~~~ 565 (637)
++|+.|... +..++...+|+++||+||+|++++|..++|.+.. ++++++++||||+||+|||+||+++
T Consensus 481 ~~~~~~~~~-----~~~~~~~~~~~~~~l~~p~~~~~~l~~~~~~~~~-------~~~~~~~~~~i~~kY~gyi~rq~~~ 548 (618)
T PRK05192 481 VTPDELNEL-----GGDPLKREVSLLDLLRRPEITYEDLAKLDPELAD-------LDPEVAEQVEIEIKYEGYIERQQEE 548 (618)
T ss_pred cCHHHHHhh-----cCCcccCCCcHHHHhCCCCCCHHHHHhhcccccc-------CCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999877653 2234566789999999999999999998876554 7899999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCCCCcCccHHHHHHhhccCCCCHHHhhcCCCCCHHHHHHHHHHHhcCcc
Q psy9395 566 VEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFL 631 (637)
Q Consensus 566 i~~~~~~e~~~iP~d~dY~~i~~LS~E~~ekL~~~rP~tlgqAsrI~GvtPa~i~~L~~~l~~~~~ 631 (637)
|++++++|+++||+||||++|+|||+|++|||+++||.||||||||||||||||+.|++||++.++
T Consensus 549 ~~~~~~~e~~~ip~~~dy~~i~~ls~E~~~kL~~~~P~t~gqA~ri~Gvtpa~i~~l~~~l~~~~~ 614 (618)
T PRK05192 549 IEKLKRLENKKIPEDIDYDAISGLSNEAREKLNKIRPETIGQASRISGVTPADISILLVYLKKRGR 614 (618)
T ss_pred HHHHHhhcCCCCcCCCCcccccchHHHHHHHHHhcCCCCHHHHHhcCCCCHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999987654
No 4
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=100.00 E-value=5.6e-155 Score=1271.16 Aligned_cols=615 Identities=60% Similarity=0.962 Sum_probs=585.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
|||+|||||+||++||+++|+.|.+|+|+|++...+|.+.|+++.||.++++++++++++|+.+..++|..+++|+.+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 79999999999999999999999999999998777888999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEe-CCeEEEEEEecceEEEeceEEEecccccCCceee
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHI 165 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~-~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~~~~i 165 (637)
+++|++|.+++|+|+..|...+++.+++++++.+++..|+++..+ ++++++|.+.+|..+.|+.||+|||+|+++.+|+
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCCCEEe
Confidence 999999999999999999999999999988999998899999776 6789999999998999999999999999999999
Q ss_pred cccccCCCCccccchHHHHHHHHhcCccceecccCCCCcccccccccchhhcccCCCCCCceeeecCCCcCCCccccccc
Q psy9395 166 GLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFI 245 (637)
Q Consensus 166 g~~~~~~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p~~~~~si~~~~~~~~~~d~~~~~~fs~~~~~~~~~~~~sc~~ 245 (637)
|...++.|+.|+.+++.++.+|.++|+++.+||||||||++++||||++++.|++| ..+.+|||++.......+++||+
T Consensus 161 g~~~~~~Gr~~~~~a~~l~~~l~~~g~~~~r~ktgtppri~~~sid~~~~~~q~gd-~~~~~fs~~~~~~~~~~~~~C~~ 239 (617)
T TIGR00136 161 GDKSYSAGRAGEQPSIGLSTTLRELGFKVGRLKTGTPPRIDKRSIDFSKLEVQHGD-NPPPAFSFMNKNFLPLQQLPCYL 239 (617)
T ss_pred cccccCCCCCcchhhHHHHHHHHhcCCcccccCCCCCceecCCccCHHhcccccCC-CCCCCCCCCCCCCCCCCcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999 88999999865422337999999
Q ss_pred ccccccccccccccccccccccccccccCCCCcccHHHHhhccCCCcccccccccCCCCCcceecCcccCCCCHHHHHHH
Q psy9395 246 THTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIEL 325 (637)
Q Consensus 246 t~t~~~~~~ii~~~~~~~~~~~g~~~~~G~r~~psie~~~~~f~~~~~~~~~le~~gl~~~~~~~~g~~~~l~~~~q~~~ 325 (637)
|+|+.++|++|+++++++++|+|.+.+.|||||||||+++.+|.++..|++||+|++++.+++|++|+|++||+++|.++
T Consensus 240 t~t~~~~h~ii~~~~~~s~~~~g~i~~~GpRYCpsIe~k~~~f~~~~~h~v~lepe~~~~~~~~~~G~st~lp~~~q~~i 319 (617)
T TIGR00136 240 THTNPKTHDLIRSNLHRSPMYSGVIEGNGPRYCPSIEDKVVRFADKERHQIFLEPEGLNSDEIYPNGLSTSLPEDVQLQI 319 (617)
T ss_pred ccCcHHHHHHHHhccccccccCcccCCCCCCCCCCHHHHHhhcCCCCCceEEEeecCCCCCeEEecCeecCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcceEEeccccccccceeCccccCccccccCCCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy9395 326 VQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPG 405 (637)
Q Consensus 326 ~~~i~gle~a~v~~~G~~~e~~~v~~~~l~~tlesk~v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~~~~~~~~ 405 (637)
+++||||+||+++++||+||||||+|++|++|||+|.++||||||||+||+||+||||||++||+||+++++|++|++++
T Consensus 320 ~~~ipGle~a~~~r~gy~~e~~~i~p~~l~~~le~k~~~gLf~AGqi~Gt~Gy~eAaa~Gl~Ag~naa~~~~~~~~~~l~ 399 (617)
T TIGR00136 320 VRSIPGLENAEILRPGYAIEYDFFDPRQLKPTLETKLIQGLFFAGQINGTTGYEEAAAQGLMAGINAALKLQNKEPFILK 399 (617)
T ss_pred HHcCcCcccceEeccccceEEeEEChhhCchhheeCCCCCeEEccccCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHhhhcCCCCccccccchHHHhhhcccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhhcce
Q psy9395 406 RDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTW 485 (637)
Q Consensus 406 r~~~~ig~l~~~l~~~~~~epyrm~tsr~e~rl~~r~dn~~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (637)
|+++||||||||||||||+||||||||||||||+||+||||.||||+|+++|||+++||+.|+++++.+++++++|++++
T Consensus 400 r~~~yiGvliddlvtkg~~EPYRmfTSRaE~Rl~lR~dNAd~RL~~~g~~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 479 (617)
T TIGR00136 400 RSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADFRLTEIGRELGLIDDERYARFLKKKENIEEEIQRLKSTW 479 (617)
T ss_pred cccchHhHHHHHHHhcCCCcchhhccchhHHHHHhccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCccccccccccccccccCcccCHHhhhcCCCCChhhHhcccccCCCCCccccCCcHHHHHHHHHHhhcHHHHHHHHHH
Q psy9395 486 INPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINE 565 (637)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~s~~~ll~r~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~veie~kY~gYi~rq~~~ 565 (637)
++|.+.....+...+..++...+|++|+|+||+|++++|.+++|.... ++++++++||||+||+|||+||+++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rp~~~~~~l~~~~~~~~~-------~~~~~~~~~~i~~kY~~yi~rq~~~ 552 (617)
T TIGR00136 480 LTPSKEVKEELKNHLQSPLKREASGEDLLRRPEMNLEKLTKLTPFLPA-------LDEEVLEQVEIQIKYEGYIKKQQDE 552 (617)
T ss_pred cCccHHHHHHHHhhcCCCCCCCccHHHHhCCCCCCHHHHHhhcCCccc-------CCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999653222343334445667889999999999999999998875433 6889999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCCCCcCccHHHHHHhhccCCCCHHHhhcCCCCCHHHHHHHHHHHhcC
Q psy9395 566 VEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSG 629 (637)
Q Consensus 566 i~~~~~~e~~~iP~d~dY~~i~~LS~E~~ekL~~~rP~tlgqAsrI~GvtPa~i~~L~~~l~~~ 629 (637)
|++++++|+++||+||||++|+|||+|++|||+++||.||||||||||||||||+.|++||+++
T Consensus 553 ~~~~~~~e~~~ip~~~dy~~i~~ls~E~~ekL~~~rP~tlgqA~ri~Gvtpa~i~~l~~~l~k~ 616 (617)
T TIGR00136 553 IKKLDRLENVKIPATFDYRKVPGLSTEAREKLSKFRPLSIGQASRISGITPADISILLVYLKKQ 616 (617)
T ss_pred HHHHHhhcCCCCcCCCCcccccchhHHHHHHHhhcCCCCHHHHhcCCCCCHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 5
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=100.00 E-value=1.2e-86 Score=699.06 Aligned_cols=391 Identities=60% Similarity=0.963 Sum_probs=351.1
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
||+|||||+|||+||+++|++|++|+|+..+.+.++.++|||+++|.+++++++|++++++.+...+|..++|++++|.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 89999999999999999999999999998777899999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccCCceeecc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGL 167 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~~~~ig~ 167 (637)
+||++|++++|+|+..|...+++.+++++++++++++|++|..+++++.||.+.+|..+.|+.||+|||+|+++.+++|.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtfl~G~~~iG~ 160 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTFLNGCIHIGE 160 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTGBTSEEEETT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEecccccCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccchHHHHHHHHhcCccceecccCCCCcccccccccchhhcccCCCCCCceeeecCCCcCCCccccccccc
Q psy9395 168 KSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITH 247 (637)
Q Consensus 168 ~~~~~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p~~~~~si~~~~~~~~~~d~~~~~~fs~~~~~~~~~~~~sc~~t~ 247 (637)
..++.|+.|+.++..++.+|.++|+++.+|+||+|||++++||||++++.|++| ..+.+|+|++.. ....+++||+++
T Consensus 161 ~~~~~Gr~ge~~s~~l~~~L~~~g~~~~r~ktgtpprv~~~SId~~~~~~q~gd-~~~~~fs~~~~~-~~~~q~~~~~t~ 238 (392)
T PF01134_consen 161 RCPPGGRRGELTSDGLSESLRKLGFELGRFKTGTPPRVDKDSIDFSKLEEQPGD-DKPIPFSYLNCP-MNKEQYPCFITY 238 (392)
T ss_dssp EEEECSCTTCC-BCHHHHHHHHTTGGEEEEEEEE--EEEGGGS-CTCSEEEE-T-SSTC-SSSSCCS-TSHHHHHEEEEE
T ss_pred cccccCCCccccchHHHHHHHhhCCceEEEecCCCceeccCCcCHHHHHhhhcc-CCCCCccccCCc-ccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 888889998764 345789999999
Q ss_pred ccccccccccccccccc-cccccccccCCCCcccHHHHhhccCCCcccccccccCCCCCcceecCcccCCCCHHHHHHHH
Q psy9395 248 TNEKTHNIIRSEFKNSP-IFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELV 326 (637)
Q Consensus 248 t~~~~~~ii~~~~~~~~-~~~g~~~~~G~r~~psie~~~~~f~~~~~~~~~le~~gl~~~~~~~~g~~~~l~~~~q~~~~ 326 (637)
|+.++|.+++++++.++ +|.|.+.+.||||||||++|+.+|+++..|++||||||++++++|++|+||+||+++|.+++
T Consensus 239 t~~~~~~~i~~~~~~s~~~~~g~ie~~gpRycpsie~K~v~f~~~~~h~v~Lepe~~~~~~~y~~G~stslp~~~Q~~~~ 318 (392)
T PF01134_consen 239 TNEATHEIIRDNLHRSPDLFEGCIEGIGPRYCPSIEDKPVRFPDRPYHQVFLEPEGLNTNEYYPNGFSTSLPWDVQKRIF 318 (392)
T ss_dssp HHHHHHHHHHHTCCG-T-T-TT-CHHCHCCCTTCHHHHHTTSTSTSSEEEEEEESSTTS-EEEEETS-CSS-HHHHHHHH
T ss_pred hhHHHHHHHHhccccCcceecceeEEeccCCccchhcccccccCCCCEEEEEEecCCCCceEEecCCcCCCCHHHHHHHh
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCcceEEeccccccccceeCccccCccccccCCCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCCCC
Q psy9395 327 QSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRD 400 (637)
Q Consensus 327 ~~i~gle~a~v~~~G~~~e~~~v~~~~l~~tlesk~v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~~~ 400 (637)
++|||||||+++|+||+||||||+|.+|..+||+|.+||||||||++|++||+||+|||++||+||+++++|++
T Consensus 319 r~IpGLe~a~~~r~Gy~~ey~~v~~~~l~~~l~~k~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~~~~g~e 392 (392)
T PF01134_consen 319 RSIPGLENAEILRPGYAHEYDFVDPPQLLNTLETKKIPGLFFAGQINGTEGYEEAAAQGLIAGINAARRLQGKE 392 (392)
T ss_dssp TTSTTTTT--EEE--EEEEEEEE-GGGBBTTSBBSSSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred hcCCChhcChhhheEEeeeeeEEehhhcccceEECCCCCceECCCCcchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=100.00 E-value=1.5e-70 Score=586.09 Aligned_cols=382 Identities=24% Similarity=0.371 Sum_probs=326.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCC---------CCCCcccccCCCCcc----chhhHHHHHHHhccHHHHHH
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNI---------DTIGQMSCNPSIGGI----GKSHLVKEIDAMGGIMAIAT 74 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~---------~~~G~~~cn~s~gg~----~~~~l~~el~~~gg~~~~~~ 74 (637)
||+|||||+|||+||++||++|.+|+|+|+.+ +.++.+.|+++.+|. +.+.+.++++.+++.+...+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~a 81 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITAA 81 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeehh
Confidence 79999999999999999999999999999642 234568999999998 67888999999988766556
Q ss_pred hhcCCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEe
Q psy9395 75 DKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILT 154 (637)
Q Consensus 75 ~~~gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlA 154 (637)
+..++ |+.+ ..++|+..|.+.+.+.+++++++.+++.+|.++.. .|.||+|
T Consensus 82 d~~~I----------pagg--~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~-----------------~d~VViA 132 (433)
T TIGR00137 82 DRHAV----------PAGG--ALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPE-----------------EGITVIA 132 (433)
T ss_pred hhhCC----------CCCc--eEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEcc-----------------CCeEEEe
Confidence 66665 4422 33789999999999999999999998888887641 2479999
Q ss_pred cccccCCceeecccccCCCCccccchHHHHHHHHhc-CccceecccCCCCcccccccccchhhcccCCCCCCceeeecCC
Q psy9395 155 TGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKEL-QLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGN 233 (637)
Q Consensus 155 tG~~~~~~~~ig~~~~~~g~~g~~~~~~l~~~l~~~-G~~~~~~~~g~~p~~~~~si~~~~~~~~~~d~~~~~~fs~~~~ 233 (637)
||+. ++..|+.+|..+ |+.+.++++++||+++++|||+++++..... .
T Consensus 133 TG~~--------------------~s~~La~~L~~~~g~~~~~~~da~~p~i~~~sId~~~~~~~~r~-----------~ 181 (433)
T TIGR00137 133 TGPL--------------------TSPALSEDLKELTGMDYLYFYDAAAPIVEGDSIDKEKAFFASRY-----------D 181 (433)
T ss_pred CCCC--------------------ccHHHHHHHHHhhCCceEEEecCcCcEEecCCCCcceEEeeccC-----------C
Confidence 9984 567899999995 9999999999999999999999888744332 1
Q ss_pred CcCCCcccccccccccc--------cccccccccccccccccccccccCCCCcccHHH------HhhccCC-C-------
Q psy9395 234 INLHPKQLSCFITHTNE--------KTHNIIRSEFKNSPIFSGKIESIGPRYCPSIED------KVYRFPK-K------- 291 (637)
Q Consensus 234 ~~~~~~~~sc~~t~t~~--------~~~~ii~~~~~~~~~~~g~~~~~G~r~~psie~------~~~~f~~-~------- 291 (637)
. ....+++|++|+++. ++|.++.++|+++++|+| |||||+ ++.+|++ +
T Consensus 182 ~-~~~~yl~cplt~~e~~~f~~~l~~~~~~~~~~~~~~~~~~g---------C~~iE~~a~~g~k~~rf~~~kp~gl~~p 251 (433)
T TIGR00137 182 K-GEAAYLNCPFTEEEYFNFWEALCEAEQVPLKDFEKAKFFEG---------CLPIEEMAQRGEKTMLFGPMKPVGLFDP 251 (433)
T ss_pred C-CCcceeeCCcCcccHHHHHHHHHHHhhhhhhccccCcccCC---------CCCHHHHhhcCCceEecCCCCccCCCCC
Confidence 0 123589999999987 667778899999999987 999999 9999998 4
Q ss_pred -----cccccccccCCCCCcceecCcccCCCCHHHHHHHHHhccCCcceEEeccccccccceeC-ccccCccccccCCCC
Q psy9395 292 -----KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHG 365 (637)
Q Consensus 292 -----~~~~~~le~~gl~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~v~~~G~~~e~~~v~-~~~l~~tlesk~v~g 365 (637)
..|++||+||+.+++++|++||||+||+++|.+++|+|||||||+|+|+||+||||||| |++|++|||+|.+||
T Consensus 252 ~~~~~~~~~v~l~~e~~~~~~~~~~G~~t~l~~~~Q~~~~r~ipgle~a~~~r~g~~~~~~~i~~p~~L~~~l~~k~~~~ 331 (433)
T TIGR00137 252 RTGKKPYAVVQLRQEDKAGTLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLTASLHFKDRQT 331 (433)
T ss_pred CCCCCCceEEEEeccccCCCEEecccccCCCCHHHHHHHHhcCcCccceEEeecceEEeeeeeCCHHHhhHHhccCCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred EEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhHHHHhhhcCCCCccccccchHHHhhhcccccc
Q psy9395 366 LFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNA 445 (637)
Q Consensus 366 Lf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~~~~~~~~r~~~~ig~l~~~l~~~~~~epyrm~tsr~e~rl~~r~dn~ 445 (637)
||||||||||+||+||+|||++||+|||++++|++|++++ .++|||||||||+|+..
T Consensus 332 lf~AGQi~G~~GY~Eaaa~Gl~agina~~~~~~~~~~~~~-~~~~iG~l~~~l~~~~~---------------------- 388 (433)
T TIGR00137 332 LFFAGQLTGVEGYVASTAGGWLAGINAARLALGEPLLTLP-AETMMGALFNYISTASP---------------------- 388 (433)
T ss_pred EEECcccccchHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CcchHHHHHHHHhcCCC----------------------
Confidence 9999999999999999999999999999999999999999 78899999999997631
Q ss_pred cccccccccccCCCCHH--HH-HHHHHHHHHHHHHHHHhhc
Q psy9395 446 DLRLTEIGWKLGCVSYK--QW-KIFEKKREIITKELQRLKD 483 (637)
Q Consensus 446 ~~r~~~~~~~~g~~~~~--~~-~~~~~~~~~~~~~~~~l~~ 483 (637)
..++|++.||||+++- +. .+-++++...+.+++.|+.
T Consensus 389 -~~~qp~~~n~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (433)
T TIGR00137 389 -KHFQPMNPNFGLLPELPQKIRNKKERYEQYADRALETLTT 428 (433)
T ss_pred -CCCCCCCCccccCCCccccccchHHHHHHHHHHHHHHHHH
Confidence 4599999999999973 22 2333444455555555543
No 7
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=100.00 E-value=2.5e-68 Score=564.62 Aligned_cols=380 Identities=28% Similarity=0.386 Sum_probs=324.4
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCC---------CCCCcccccCCCCcc----chhhHHHHHHHhccHHHHH
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI---------DTIGQMSCNPSIGGI----GKSHLVKEIDAMGGIMAIA 73 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~---------~~~G~~~cn~s~gg~----~~~~l~~el~~~gg~~~~~ 73 (637)
.||+|||||++|++||++||++|++|+|+|+.+ +.++.+.|+++.++. +.+.+.++++.+++.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~~a 82 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIMEA 82 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcchheec
Confidence 489999999999999999999999999999542 335678999999987 5677778888888765544
Q ss_pred HhhcCCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEE
Q psy9395 74 TDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVIL 153 (637)
Q Consensus 74 ~~~~gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIl 153 (637)
.+..++ |+... .++|+..+.+.+.+.++++++++++..+|+++. + | .|||
T Consensus 83 ad~~~v----------PA~ga--LvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~--~----------~------~vii 132 (436)
T PRK05335 83 ADAHRV----------PAGGA--LAVDREGFSEYVTEALENHPLITVIREEVTEIP--E----------D------ITII 132 (436)
T ss_pred ccccCC----------CCccc--eecCHHHHHHHHHHHHHcCCCcEEEccchhccc--c----------C------CEEE
Confidence 444444 44222 268888899999999999999999888888874 1 1 6999
Q ss_pred ecccccCCceeecccccCCCCccccchHHHHHHHHhc-CccceecccCCCCcccccccccchhhcccCCCCCCceeeecC
Q psy9395 154 TTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKEL-QLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLG 232 (637)
Q Consensus 154 AtG~~~~~~~~ig~~~~~~g~~g~~~~~~l~~~l~~~-G~~~~~~~~g~~p~~~~~si~~~~~~~~~~d~~~~~~fs~~~ 232 (637)
|||+ .++..|+..|.++ |.+..+|++|+||+++.+||||++++.++++ ...
T Consensus 133 atG~--------------------~~s~~l~~~l~~~~g~~~~~f~~~~~p~v~~~sid~~~~~~~~~~-~~~------- 184 (436)
T PRK05335 133 ATGP--------------------LTSDALAEAIKALTGEDYLYFFDAAAPIVDKDSIDMDKVYLASRY-DKG------- 184 (436)
T ss_pred eCCC--------------------CchHHHHHHHHHhcCCccceecCCCCceecCCccCHHHceeccCC-CCC-------
Confidence 9999 4778899999998 9999999999999999999999999999998 221
Q ss_pred CCcCCCccccccccc----------ccccccccccccccccccccccccccCCCCcccHHHHhhccCCCccc--------
Q psy9395 233 NINLHPKQLSCFITH----------TNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSH-------- 294 (637)
Q Consensus 233 ~~~~~~~~~sc~~t~----------t~~~~~~ii~~~~~~~~~~~g~~~~~G~r~~psie~~~~~f~~~~~~-------- 294 (637)
...+++|++++ ++.+ .++.++|+++++|+| |||||+++.||.++.+|
T Consensus 185 ----~~~~~~C~~~~~~y~~f~~~l~~~~--~~~~~~~~~~~~f~g---------C~~iE~~a~r~~~~~~~gp~kpvgl 249 (436)
T PRK05335 185 ----EADYLNCPMTKEEYEAFYEALIAAE--KAELKDFEKEKYFEG---------CMPIEVMAERGRETLRFGPMKPVGL 249 (436)
T ss_pred ----CccceeCCCChHHHhhhHHhhcCHh--HhhhcccccCcccCC---------CCCHHHHHhhcccccccCCCCcccc
Confidence 13589999998 3333 457889999999988 99999999999887777
Q ss_pred -----------ccccccCCCCCcceecCcccCCCCHHHHHHHHHhccCCcceEEeccccccccceeC-ccccCccccccC
Q psy9395 295 -----------HIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQ 362 (637)
Q Consensus 295 -----------~~~le~~gl~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~v~~~G~~~e~~~v~-~~~l~~tlesk~ 362 (637)
++||+||+.+++++|++||||+||+++|.+++++||||++|+|+|+||+||||||+ |+++++|||+|.
T Consensus 250 ~~p~~~~~~~a~v~L~~e~~~~~~~~~~Gfqt~l~~~~Q~~~~r~Ipgle~a~~~r~G~~~~~~~i~~p~~l~~~l~~k~ 329 (436)
T PRK05335 250 TDPRTGKRPYAVVQLRQDNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKK 329 (436)
T ss_pred cCcccCCCcceEEEEecCCCCCCeEecccccCCCCHHHHHHHHhcccchhceEEEeceEEeeccccCChhhCchhccccC
Confidence 89999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhHHHHhhhcCCCCccccccchHHHhhhccc
Q psy9395 363 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLRE 442 (637)
Q Consensus 363 v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~~~~~~~~r~~~~ig~l~~~l~~~~~~epyrm~tsr~e~rl~~r~ 442 (637)
+|||||||||+|++||+||++||++||+||+++++|++|+++||+++ ||+|||||++.
T Consensus 330 ~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~~~~~-iG~l~~~l~~~--------------------- 387 (436)
T PRK05335 330 RPNLFFAGQITGVEGYVESAASGLLAGINAARLALGKEPVIPPPTTA-LGALLNYITGA--------------------- 387 (436)
T ss_pred CCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCc-HHHHHHHHhcC---------------------
Confidence 99999999999999999999999999999999999999999999998 99999999842
Q ss_pred ccccccccccccccCCCCHH--HHH---HHHHHHHHHHHHHHHhhc
Q psy9395 443 DNADLRLTEIGWKLGCVSYK--QWK---IFEKKREIITKELQRLKD 483 (637)
Q Consensus 443 dn~~~r~~~~~~~~g~~~~~--~~~---~~~~~~~~~~~~~~~l~~ 483 (637)
....++|++.||||+++- |.. +-+++....+.+++.|+.
T Consensus 388 --~~~~~qpm~~n~gl~~~~~~~~~~~~k~~~~~~~~~ra~~~~~~ 431 (436)
T PRK05335 388 --NPKHFQPMNANFGLFPPLGKRIRGEDKKERKEAYAERALADLKE 431 (436)
T ss_pred --CCCCCCCCCCccccCCcchhhccccchHHHHHHHHHHHHHHHHH
Confidence 115799999999999974 222 333444445555555543
No 8
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-52 Score=409.34 Aligned_cols=363 Identities=28% Similarity=0.411 Sum_probs=304.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC---------CCCCCcccccCCCCcc----chhhHHHHHHHhccHHHHH
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN---------IDTIGQMSCNPSIGGI----GKSHLVKEIDAMGGIMAIA 73 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~---------~~~~G~~~cn~s~gg~----~~~~l~~el~~~gg~~~~~ 73 (637)
--|.|||||.||.+|||++|++|.+|.|+|.. .+.+.+..|++|+++. +.+.+..|+..+|.+....
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii~~ 83 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLIIEA 83 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHHhhh
Confidence 36999999999999999999999999999954 2445568899999986 4578889999999999999
Q ss_pred HhhcCCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEE
Q psy9395 74 TDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVIL 153 (637)
Q Consensus 74 ~~~~gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIl 153 (637)
+|.+.+ |+ +....+|+..|.+.+.+.+++++.|++++.+|+.+-. ++ .+||
T Consensus 84 Ad~~~V----------PA--GgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~-dg----------------~~vI 134 (439)
T COG1206 84 ADKHRV----------PA--GGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP-DG----------------ITVI 134 (439)
T ss_pred hhhccC----------CC--CceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCC-CC----------------cEEE
Confidence 999888 66 4445799999999999999999999999999998853 22 3899
Q ss_pred ecccccCCceeecccccCCCCccccchHHHHHHHHhc-CccceecccCCCCcccccccccchhhcccCCCCCCceeeecC
Q psy9395 154 TTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKEL-QLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLG 232 (637)
Q Consensus 154 AtG~~~~~~~~ig~~~~~~g~~g~~~~~~l~~~l~~~-G~~~~~~~~g~~p~~~~~si~~~~~~~~~~d~~~~~~fs~~~ 232 (637)
|||. .++..|++.+.++ |-....|.....|.++.+|||+++.+.+++++
T Consensus 135 ATGP--------------------LTs~~La~~i~~ltG~d~l~FyDAaAPIi~~dSIdmd~~~~~sRYd---------- 184 (439)
T COG1206 135 ATGP--------------------LTSDALAEKIKELTGEDYLYFYDAAAPIIEFDSIDMDKAYLKSRYD---------- 184 (439)
T ss_pred ecCC--------------------CCCHHHHHHHHHhhCCceEEeecccCceeeccccchHHHHhhhccc----------
Confidence 9999 4778898888776 77777888999999999999999999988872
Q ss_pred CCcCCCccccccccccccc-ccc-cc------cccccccccccccccccCCCCcccHHHHh------hccCCC-------
Q psy9395 233 NINLHPKQLSCFITHTNEK-THN-II------RSEFKNSPIFSGKIESIGPRYCPSIEDKV------YRFPKK------- 291 (637)
Q Consensus 233 ~~~~~~~~~sc~~t~t~~~-~~~-ii------~~~~~~~~~~~g~~~~~G~r~~psie~~~------~~f~~~------- 291 (637)
......++|.++..... .++ ++ .++|++.++|.| |.+||.+. .+|.+-
T Consensus 185 --Kg~a~YiNCPmtkEey~~F~eaL~~ae~~~~k~fEk~~~Feg---------CmPIE~mA~rG~~Tl~~GPmKPvGL~~ 253 (439)
T COG1206 185 --KGEADYINCPMTKEEYLAFYEALIEAEKAPLKDFEKEKYFEG---------CMPIEVMAERGRKTLRFGPMKPVGLED 253 (439)
T ss_pred --cccchhhcCCCCHHHHHHHHHHHHhcccCChhhhcccccccc---------cCcHHHHHhhCcchhccCCCCCcCCCC
Confidence 12245789998765321 111 12 346777888888 99999854 445441
Q ss_pred --------cccccccccCCCCCcceecCcccCCCCHHHHHHHHHhccCCcceEEeccccccccceeC-ccccCccccccC
Q psy9395 292 --------KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQ 362 (637)
Q Consensus 292 --------~~~~~~le~~gl~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~v~~~G~~~e~~~v~-~~~l~~tlesk~ 362 (637)
.-..+.|..+.-....++++||+|.|.|.+|.+++++|||||||+|.|+|++|+++||+ |..|++||+.|+
T Consensus 254 p~~~tgk~pYAVVQLRqdna~GtLynmVGFQT~LkwgeQkrVf~mIPgLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~ 333 (439)
T COG1206 254 PRDPTGKRPYAVVQLRQDNAAGTLYNMVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKK 333 (439)
T ss_pred CCCCCCCCceEEEEeeccccccceeeeeeeeeccchhhhhhhhhhcCCcchhhhhhccceecccccCChhhhhHHhhccc
Confidence 11234445555445577899999999999999999999999999999999999999999 899999999999
Q ss_pred CCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhHHHHhhhcCCCCccccccchHHHhhhccc
Q psy9395 363 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLRE 442 (637)
Q Consensus 363 v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~~~~~~~~r~~~~ig~l~~~l~~~~~~epyrm~tsr~e~rl~~r~ 442 (637)
-|+||||||++|+.||.|++|+|++||+|||+..+|++|+++|.+++ ||.|++++++.+
T Consensus 334 ~p~l~fAGQitG~EGYveSaA~Gllag~naa~~~~g~~~~~~P~tT~-~Gal~~yIt~~~-------------------- 392 (439)
T COG1206 334 RPNLFFAGQITGVEGYVESAASGLLAGINAARLALGEEPLIPPPTTA-LGALVNYITGAG-------------------- 392 (439)
T ss_pred CCCcEEeeeeecchhhhHHhhhhHHHhhHHHHHhcCCCCCCCCchhH-HHHHHHHHhcCC--------------------
Confidence 99999999999999999999999999999999999999999999997 999999999764
Q ss_pred ccccccccccccccCCCCHHH
Q psy9395 443 DNADLRLTEIGWKLGCVSYKQ 463 (637)
Q Consensus 443 dn~~~r~~~~~~~~g~~~~~~ 463 (637)
...|+||+.+|||+++-.
T Consensus 393 ---~k~FQPMn~NFGl~p~L~ 410 (439)
T COG1206 393 ---KKSFQPMNVNFGLLPELE 410 (439)
T ss_pred ---ccCcccCCCCcccCCcch
Confidence 267999999999999743
No 9
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=100.00 E-value=5.7e-38 Score=323.56 Aligned_cols=346 Identities=22% Similarity=0.292 Sum_probs=255.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC-------cccccCCCCccch---------h-hHHHHHHHhcc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG-------QMSCNPSIGGIGK---------S-HLVKEIDAMGG 68 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G-------~~~cn~s~gg~~~---------~-~l~~el~~~gg 68 (637)
.+||||||||+||++||..+++.|++|+|||+++ .+| .++||.++..... + .+...++.+..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~-k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGP-KLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCc-cccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 3899999999999999999999999999999984 444 4789998866511 1 22333444443
Q ss_pred -HHHHHHhhcCCeEeeec-cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceE
Q psy9395 69 -IMAIATDKSGIQFRILN-SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIK 145 (637)
Q Consensus 69 -~~~~~~~~~gi~~~~l~-~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~ 145 (637)
.+..|++..|+.++... ++.+|.. .....+.+++...+++ .||++. +++|.++..++. .+.+.+.+|.+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~s------dkA~~Iv~~ll~~~~~-~gV~i~~~~~v~~v~~~~~-~f~l~t~~g~~ 153 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDS------DKASPIVDALLKELEA-LGVTIRTRSRVSSVEKDDS-GFRLDTSSGET 153 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCc------cchHHHHHHHHHHHHH-cCcEEEecceEEeEEecCc-eEEEEcCCCCE
Confidence 45688999999987765 3555531 1224688888899988 789994 999999987763 56788888889
Q ss_pred EEeceEEEecccccCCceeecccccC-CCCccccchHHHHHHHHhcCccceecccCCCCcccc------------ccccc
Q psy9395 146 FFSKTVILTTGTFLNGKIHIGLKSYS-AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDK------------RTIDF 212 (637)
Q Consensus 146 i~a~~VIlAtG~~~~~~~~ig~~~~~-~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p~~~~------------~si~~ 212 (637)
++||.+|+|||+. ++| .|.+|.+ |.++. ++|+++.++.++..|.... .++..
T Consensus 154 i~~d~lilAtGG~----------S~P~lGstg~g--y~iA~---~~G~~I~~~rpalvpft~~~~~~~~l~gls~~~v~~ 218 (408)
T COG2081 154 VKCDSLILATGGK----------SWPKLGSTGFG--YPIAR---QFGHTITPLRPALVPFTLDESFLERLAGLSLKSVPL 218 (408)
T ss_pred EEccEEEEecCCc----------CCCCCCCCchh--hHHHH---HcCCccccCccccCCccCCHHHHHHhcCCcccceEE
Confidence 9999999999995 788 7888877 77765 8899999888777663221 12222
Q ss_pred chhh----cccCCCCCCceeeecCCCcCCCcccccccccccccc--ccc---ccccccccccccccccccCCCCcccHHH
Q psy9395 213 SKME----EQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKT--HNI---IRSEFKNSPIFSGKIESIGPRYCPSIED 283 (637)
Q Consensus 213 ~~~~----~~~~d~~~~~~fs~~~~~~~~~~~~sc~~t~t~~~~--~~i---i~~~~~~~~~~~g~~~~~G~r~~psie~ 283 (637)
+... ...++ ..+++|+++ |+.+.++|.|+.. .++. ..+ +.++.+...+.... ....|+ .++..
T Consensus 219 ~v~~~~g~~~~g~-~LfTh~GiS---GPavl~~Ss~~~~-~~~~~~~~i~iDllP~~~~~~l~~~l-~~~~~~--kslkn 290 (408)
T COG2081 219 SVTAGKGITFQGD-LLFTHRGLS---GPAVLQLSSYWRL-LEKKGGATLSIDLLPDVDAEELLREL-RRANPK--KSLKN 290 (408)
T ss_pred EEecCCCceeecc-eEEEecCCc---HHHHHHHHHHHHH-hccCCCceEEEecCCCCCHHHHHHHH-HhhChh--hHHHH
Confidence 1111 22345 667777666 4578889988863 2111 122 24555444333332 222333 46777
Q ss_pred HhhccCCCcccccccccCCCCCcceecCcccCCCCHHHHHHHHHhcc----------CCcceEEeccccccccceeCccc
Q psy9395 284 KVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSID----------GMKNANIIRPGYAIEYDYFNPCN 353 (637)
Q Consensus 284 ~~~~f~~~~~~~~~le~~gl~~~~~~~~g~~~~l~~~~q~~~~~~i~----------gle~a~v~~~G~~~e~~~v~~~~ 353 (637)
.+....+++..+++++..++ .++ ....+++++..+++..|+ ++++|+||.|| ||.++
T Consensus 291 ~L~~~lp~rlv~~~l~~~~i-~~~-----~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~GG-------V~~~e 357 (408)
T COG2081 291 ALAKLLPKRLVEFLLERAGI-PDE-----PLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAGG-------VDTKE 357 (408)
T ss_pred HHHHHhhhHHHHHHHHhccC-CCc-----chhhcCHHHHHHHHHHHhcCeeeccCCcccceeEEecCc-------eehhh
Confidence 88888888888999998888 333 345788889999998876 57999999999 99999
Q ss_pred cC-ccccccCCCCEEEEEee---cCCC-CHH--HHHHHHHHHHHHHHHHh
Q psy9395 354 LK-SSLETKQIHGLFFAGQI---NGTT-GYE--EAASQGLLAGLNAALFS 396 (637)
Q Consensus 354 l~-~tlesk~v~gLf~aGei---~G~~-Gy~--eA~a~G~~AG~naa~~~ 396 (637)
|| +|||+|.+||||||||+ +|.| ||| |||++|++||..++.++
T Consensus 358 id~kTmesk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 358 IDSKTMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred cCHHHHHhhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 99 68999999999999998 8888 999 99999999999998753
No 10
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=100.00 E-value=9e-38 Score=336.24 Aligned_cols=344 Identities=24% Similarity=0.333 Sum_probs=222.4
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC-------cccccCCCCccc-----------hhhHHHHHHHhcc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG-------QMSCNPSIGGIG-----------KSHLVKEIDAMGG 68 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G-------~~~cn~s~gg~~-----------~~~l~~el~~~gg 68 (637)
|||+|||||+||++||+.||+.|++|+|+|++. ..| .++||.++.... ...+...+..++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~-~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNK-RVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc-ccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence 899999999999999999999999999999984 444 478997763221 1234444555543
Q ss_pred -HHHHHHhhcCCeEeee-ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceE
Q psy9395 69 -IMAIATDKSGIQFRIL-NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIK 145 (637)
Q Consensus 69 -~~~~~~~~~gi~~~~l-~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~ 145 (637)
.+..|+...|+.+... +++.+|.. -....+.++|.+.+++ .++++ ++++|.+|..++++++.|.+.++..
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s------~~a~~Vv~~L~~~l~~-~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~ 152 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKS------DKASSVVDALLEELKR-LGVEIHFNTRVKSIEKKEDGVFGVKTKNGGE 152 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT--------HHHHHHHHHHHHHH-HT-EEE-S--EEEEEEETTEEEEEEETTTEE
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCC------CcHHHHHHHHHHHHHH-cCCEEEeCCEeeeeeecCCceeEeeccCccc
Confidence 4678899999988765 35556641 1235688889988887 68888 5999999999888888899967789
Q ss_pred EEeceEEEecccccCCceeecccccC-CCCccccchHHHHHHHHhcCccceecccCCCCcc-----------cccc----
Q psy9395 146 FFSKTVILTTGTFLNGKIHIGLKSYS-AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRI-----------DKRT---- 209 (637)
Q Consensus 146 i~a~~VIlAtG~~~~~~~~ig~~~~~-~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p~~-----------~~~s---- 209 (637)
+.||.||+|||+. ++| .|++|++ +.+++ ++|+++..+.++..|.. .+-+
T Consensus 153 ~~a~~vILAtGG~----------S~p~~GS~G~g--y~~a~---~lGh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~ 217 (409)
T PF03486_consen 153 YEADAVILATGGK----------SYPKTGSDGSG--YRIAK---KLGHTITPPYPALVPLKCDEPWLFFKELSGVRLKAV 217 (409)
T ss_dssp EEESEEEE----S----------SSGGGT-SSHH--HHHHH---HTT--EEEEEEES--EE--HHHHHTGGGTT-EEEEE
T ss_pred ccCCEEEEecCCC----------CccccCCCcHH--HHHHH---HCCCcEecCCCccCCeeecchhhhhhhhCCCceeeE
Confidence 9999999999995 777 7888877 77765 88999887766554421 1111
Q ss_pred ---cccchhhcccCCCCCCceeeecCCCcCCCcccccccccccccc--ccc---ccccccccccccccc--cccCCCCcc
Q psy9395 210 ---IDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKT--HNI---IRSEFKNSPIFSGKI--ESIGPRYCP 279 (637)
Q Consensus 210 ---i~~~~~~~~~~d~~~~~~fs~~~~~~~~~~~~sc~~t~t~~~~--~~i---i~~~~~~~~~~~g~~--~~~G~r~~p 279 (637)
++......+.|+ ..+++++++| +++.++|+++.....+. ..+ +.+.++...+..-.. ....++ .
T Consensus 218 ~~~~~~~~~~~~~Ge-llfT~~GiSG---p~il~lS~~~~~~l~~~~~~~i~id~~p~~~~e~l~~~l~~~~~~~~~--~ 291 (409)
T PF03486_consen 218 ISLLDGKKKASETGE-LLFTHYGISG---PAILQLSRFIARALNKKKKVEISIDFLPDLSEEELEELLQERKEKNPK--R 291 (409)
T ss_dssp EEEE-ECTCEEEEEE-EEE-SSEEES---HHHHHHTTTHHHHHH--TTEEEEEESSTTS-HHHHHHHHHHHHHHTTT--S
T ss_pred EEEeccCCccceeee-EEEECCccch---HHHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHHHh--h
Confidence 122345566787 8899999885 56889999884321111 111 234444333322211 112222 3
Q ss_pred cHHHHhhccCCCcccccccccCCC-CCcceecCcccCCCCHHHHHHHHHhcc----------CCcceEEeccccccccce
Q psy9395 280 SIEDKVYRFPKKKSHHIFLEPEGI-VINEYYPNGISTSLPFEAQIELVQSID----------GMKNANIIRPGYAIEYDY 348 (637)
Q Consensus 280 sie~~~~~f~~~~~~~~~le~~gl-~~~~~~~~g~~~~l~~~~q~~~~~~i~----------gle~a~v~~~G~~~e~~~ 348 (637)
++++.+..+.+++....+++..++ +.+. ....++.++..+++..++ |+++|+||+||
T Consensus 292 ~~~~~l~~~lp~rl~~~ll~~~~i~~~~~-----~~~~l~~~~~~~L~~~lk~~~~~v~g~~~~~~A~VT~GG------- 359 (409)
T PF03486_consen 292 TLKNFLKGLLPKRLALALLKRAGIKDPDK-----KVSELSKKERNRLANLLKRFPFTVTGTGGFDKAQVTAGG------- 359 (409)
T ss_dssp BHHHHHTTTS-HHHHHHHHHHTTS-STTS-----BGGGS-HHHHHHHHHHHHCEEEEESEE--TTT-SEEEEE-------
T ss_pred HHHHHHHHHhHHHHHHHHHHHcCCCcccc-----chhhcCHHHHHHHHHHHHhCceeecccCCCceEEEECCC-------
Confidence 578888888888888888888887 4322 246788999999988765 67999999999
Q ss_pred eCccccCc-cccccCCCCEEEEEee---cCCC-CHH--HHHHHHHHHHHH
Q psy9395 349 FNPCNLKS-SLETKQIHGLFFAGQI---NGTT-GYE--EAASQGLLAGLN 391 (637)
Q Consensus 349 v~~~~l~~-tlesk~v~gLf~aGei---~G~~-Gy~--eA~a~G~~AG~n 391 (637)
|+.+|+|+ |||||.+||||||||+ +|.| ||| |||+||++||.+
T Consensus 360 V~~~eid~~TmeSk~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 360 VDLKEIDPKTMESKLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp E-GGGB-TTT-BBSSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH-
T ss_pred cCHHHCCHhhhcccCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhCC
Confidence 99999995 9999999999999998 8998 999 999999999975
No 11
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.96 E-value=1.4e-29 Score=274.70 Aligned_cols=338 Identities=25% Similarity=0.308 Sum_probs=220.2
Q ss_pred EEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC------cccccCCCCccchh----------hHHHHHHHhc-cHHHH
Q psy9395 10 IVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG------QMSCNPSIGGIGKS----------HLVKEIDAMG-GIMAI 72 (637)
Q Consensus 10 iVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G------~~~cn~s~gg~~~~----------~l~~el~~~g-g~~~~ 72 (637)
+|||||+||++||+.|++.|++|+|+|++....+ .+.||.++...... .+...+..++ .....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999853322 35687665432111 1111222222 22346
Q ss_pred HHhhcCCeEeeecc-ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEece
Q psy9395 73 ATDKSGIQFRILNS-SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKT 150 (637)
Q Consensus 73 ~~~~~gi~~~~l~~-~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~ 150 (637)
|++..|+.+..... ..+|. .-....+.+.+.+.+++ .++++ .++.|+++..+++ .+.|.+ ++..+.||.
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~------~~~a~~v~~~L~~~l~~-~gv~i~~~~~V~~i~~~~~-~~~v~~-~~~~i~ad~ 151 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPC------SDSAADVLDALLNELKE-LGVEILTNSKVKSIKKDDN-GFGVET-SGGEYEADK 151 (400)
T ss_pred HHHHcCCeeEEecCCEeECC------CCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEecCC-eEEEEE-CCcEEEcCE
Confidence 77788887765432 22221 11234677788888877 67888 4889999976555 455666 456899999
Q ss_pred EEEecccccCCceeecccccC-CCCccccchHHHHHHHHhcCccceecccCCCC---------cccccccc--------c
Q psy9395 151 VILTTGTFLNGKIHIGLKSYS-AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPP---------RIDKRTID--------F 212 (637)
Q Consensus 151 VIlAtG~~~~~~~~ig~~~~~-~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p---------~~~~~si~--------~ 212 (637)
||+|||++ ++| .|.+|++ +.++. .+|+++.++.+...| .+.+-++. .
T Consensus 152 VIlAtG~~----------s~p~~gs~G~g--~~la~---~lG~~i~~~~P~l~~l~~~~~~~~~l~Gv~~~~~~~~~~~~ 216 (400)
T TIGR00275 152 VILATGGL----------SYPQLGSTGDG--YEIAE---SLGHTIVPPVPALVPLTLDESFLKELSGISLDGVVLSLVNG 216 (400)
T ss_pred EEECCCCc----------ccCCCCCCcHH--HHHHH---HCCCCEecccceEeEEEeCCcccccCCCCcCccEEEEecCC
Confidence 99999997 445 5666665 55654 667766543322211 11111111 1
Q ss_pred chhhcccCCCCCCceeeecCCCcCCCcccccccccccc--ccccc---ccccccccccccc---cccccCCCCcccHHHH
Q psy9395 213 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNE--KTHNI---IRSEFKNSPIFSG---KIESIGPRYCPSIEDK 284 (637)
Q Consensus 213 ~~~~~~~~d~~~~~~fs~~~~~~~~~~~~sc~~t~t~~--~~~~i---i~~~~~~~~~~~g---~~~~~G~r~~psie~~ 284 (637)
+....+.|+ ..+++++++| +.+.++|+++..... ....+ +.+.++...+..- .....+. ..+++.
T Consensus 217 ~~~~~~~g~-llft~~gisG---~~vl~~s~~~~~~~~~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~ 289 (400)
T TIGR00275 217 KKVLEEFGD-LLFTHFGLSG---PAILDLSAFAARALLKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPK---KTVKNI 289 (400)
T ss_pred cEEEeeccc-EEEECCCcCH---HHHHHHHHHHHHHhhcCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChh---hhHHHH
Confidence 112234466 7777777774 567888888743210 10112 2334433222111 1112221 346777
Q ss_pred hhccCCCcccccccccCCCCCcceecCcccCCCCHHHHHHHHHhcc----------CCcceEEeccccccccceeCcccc
Q psy9395 285 VYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSID----------GMKNANIIRPGYAIEYDYFNPCNL 354 (637)
Q Consensus 285 ~~~f~~~~~~~~~le~~gl~~~~~~~~g~~~~l~~~~q~~~~~~i~----------gle~a~v~~~G~~~e~~~v~~~~l 354 (637)
+..+.+++..+.+++..+++.+ .....++.++..+++..++ |+++|+||+|| |+.+|+
T Consensus 290 l~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt~GG-------v~~~ei 357 (400)
T TIGR00275 290 LKGLLPKRLAELLLEQLGIDPD-----LPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVTAGG-------VSLKEI 357 (400)
T ss_pred hhhhhhHHHHHHHHHHcCCCCC-----CChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEecCc-------ccchhc
Confidence 7777787888888888887532 2336788888888887765 68999999999 999999
Q ss_pred C-ccccccCCCCEEEEEee---cCCC-CHH--HHHHHHHHHHH
Q psy9395 355 K-SSLETKQIHGLFFAGQI---NGTT-GYE--EAASQGLLAGL 390 (637)
Q Consensus 355 ~-~tlesk~v~gLf~aGei---~G~~-Gy~--eA~a~G~~AG~ 390 (637)
| .|||+|++||||||||+ +|.| ||| |||++|++||.
T Consensus 358 ~~~~m~~k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 358 NPKTMESKLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred ChhhhhhcCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhcC
Confidence 9 69999999999999998 8998 999 99999999983
No 12
>PF13932 GIDA_assoc_3: GidA associated domain 3; PDB: 3CES_C 3CP2_A 3G05_A 3CP8_A 2ZXI_B 2ZXH_A.
Probab=99.96 E-value=5.9e-30 Score=205.63 Aligned_cols=72 Identities=60% Similarity=0.955 Sum_probs=62.6
Q ss_pred hhcHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCccHHHHHHhhccCCCCHHHhhcCCCCCHHHHHHHHH
Q psy9395 553 LQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLI 624 (637)
Q Consensus 553 ~kY~gYi~rq~~~i~~~~~~e~~~iP~d~dY~~i~~LS~E~~ekL~~~rP~tlgqAsrI~GvtPa~i~~L~~ 624 (637)
+||+|||+||++++++++++|++.||+||||+.|+|||+|++|||+++||.||||||||||||||||..|++
T Consensus 1 iKY~~Yi~rq~~~i~~~~~~e~~~iP~~~dy~~i~~LS~E~~ekL~~~rP~Ti~~A~rI~GvtPa~i~~Llv 72 (72)
T PF13932_consen 1 IKYEGYIERQQQEIERLRKDESLKIPEDFDYSKIPGLSNEAREKLEKIRPRTIGQASRIPGVTPAAISLLLV 72 (72)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHHHTTSTTS-HHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCCCChhhccccHHHHHHHHHhcCCCCHHHHHhCCCCCHHHHHHHhC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999974
No 13
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.93 E-value=2e-25 Score=236.81 Aligned_cols=316 Identities=15% Similarity=0.119 Sum_probs=196.5
Q ss_pred CCcEEEEccCCCCCC-------cccccCCCCccch----------hhHHHHHHHhcc-HHHHHHhhcCCeEeeec-cccC
Q psy9395 29 GQKTLLLSHNIDTIG-------QMSCNPSIGGIGK----------SHLVKEIDAMGG-IMAIATDKSGIQFRILN-SSKG 89 (637)
Q Consensus 29 G~~V~LiE~~~~~~G-------~~~cn~s~gg~~~----------~~l~~el~~~gg-~~~~~~~~~gi~~~~l~-~~~g 89 (637)
|++|+|+|++. ..| .++||.++..... ..+...+..++. ....|+...|+.++... ++.+
T Consensus 1 g~~V~ilEkn~-~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvf 79 (376)
T TIGR03862 1 GLEVDVFEAKP-SVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVF 79 (376)
T ss_pred CCeEEEEeCCC-CccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEEC
Confidence 67899999984 443 4789998854311 122233444442 35688999999887654 5667
Q ss_pred chhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecc-eEEEeceEEEecccccCCceeecc
Q psy9395 90 AAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIG-IKFFSKTVILTTGTFLNGKIHIGL 167 (637)
Q Consensus 90 p~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g-~~i~a~~VIlAtG~~~~~~~~ig~ 167 (637)
|.- -....+.++|...+++ .||++ +++.|++| ++++ +.+.+.++ ..++||+||+|||+.
T Consensus 80 P~S------~~A~sVv~~L~~~l~~-~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtGG~--------- 140 (376)
T TIGR03862 80 PVE------MKAAPLLRAWLKRLAE-QGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALGGA--------- 140 (376)
T ss_pred CCC------CCHHHHHHHHHHHHHH-CCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCCCc---------
Confidence 741 2235688899999987 88998 59999998 4443 55766443 579999999999996
Q ss_pred cccC-CCCccccchHHHHHHHHhcCccceecccCCCCcc-----------cccccccchh----hcccCCCCCCceeeec
Q psy9395 168 KSYS-AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRI-----------DKRTIDFSKM----EEQIGDFDPVPVFSVL 231 (637)
Q Consensus 168 ~~~~-~g~~g~~~~~~l~~~l~~~G~~~~~~~~g~~p~~-----------~~~si~~~~~----~~~~~d~~~~~~fs~~ 231 (637)
++| .|.+|++ +.++. ++|+++.++.++..|.. .+-++....+ ..+.++ ..+++|+++
T Consensus 141 -s~p~~Gs~g~g--y~la~---~lGh~i~~~~PaL~pl~~~~~~~~~~~L~Gv~~~~~~~~~~~~~~~Ge-llFTh~GiS 213 (376)
T TIGR03862 141 -SWSQLGSDGAW--QQVLD---QRGVSVAPFAPANCGFLVDWSAHFASRFAGEPLKRVNATAGTQQTRGE-IVITARGLE 213 (376)
T ss_pred -cccccCCCcHH--HHHHH---HCCCcccCCcCeeceEEccCchhhHhhcCCCcccceEEEeCCeeEeee-EEEECCCcc
Confidence 777 6777766 77765 78888876555443321 1112211000 122366 777877777
Q ss_pred CCCcCCCcccccccccccccc--ccc---ccccccccccccccccccCCCCcccHHHHhhccCCCcccccccccCCCCCc
Q psy9395 232 GNINLHPKQLSCFITHTNEKT--HNI---IRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVIN 306 (637)
Q Consensus 232 ~~~~~~~~~~sc~~t~t~~~~--~~i---i~~~~~~~~~~~g~~~~~G~r~~psie~~~~~f~~~~~~~~~le~~gl~~~ 306 (637)
| +++.++|+++....... ..+ +.+.++...+........ ++ .++...+. +..|++.+
T Consensus 214 G---pavl~lS~~~~~~~~~~~~~~i~idf~P~~~~~~l~~~l~~~~-~~--k~l~~~L~------------~~~gi~~~ 275 (376)
T TIGR03862 214 G---GLIYALSAALREQIKAGGSANLFLDLLPDLSLEQVTKRLAAPR-GK--QSLSNHLR------------KALGLDGV 275 (376)
T ss_pred H---HHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHhhc-cc--chHHHHHH------------HHhCCCHH
Confidence 4 67889999873321100 111 122222211111100001 11 12222222 11222211
Q ss_pred cee-cCcccCCCCHHHHHHHHHhcc----------CCcceEEeccccccccceeCccccCccccccCCCCEEEEEee---
Q psy9395 307 EYY-PNGISTSLPFEAQIELVQSID----------GMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQI--- 372 (637)
Q Consensus 307 ~~~-~~g~~~~l~~~~q~~~~~~i~----------gle~a~v~~~G~~~e~~~v~~~~l~~tlesk~v~gLf~aGei--- 372 (637)
... ...+......++...++..++ |+++|+||+|| |+.+|+|++||||.+||||||||+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GG-------V~~~EI~~~~~Sk~~pgLYf~GEvLDv 348 (376)
T TIGR03862 276 KRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGG-------VRQDALDESLMLKARPGVFCAGEMLDW 348 (376)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCc-------ccHHHcChhhhcccCCCeEEEEEEEee
Confidence 100 011111112445667776654 67999999999 999999988999999999999998
Q ss_pred cCCC-CHH--HHHHHHHHHHHHHHHHh
Q psy9395 373 NGTT-GYE--EAASQGLLAGLNAALFS 396 (637)
Q Consensus 373 ~G~~-Gy~--eA~a~G~~AG~naa~~~ 396 (637)
+|.| ||| |||++|++||.+|+.++
T Consensus 349 dG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 349 EAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 999 99999999999998754
No 14
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.65 E-value=3e-14 Score=159.51 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=97.2
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc---------------hhhHHHHHHH----
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG---------------KSHLVKEIDA---- 65 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~---------------~~~l~~el~~---- 65 (637)
.++||||||||.||++||+.|++.|++|+|||+.....|... .+.|+.. ...+++++-.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~--~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 137 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM--KASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG 137 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc--ccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999999999999999999754333221 1222211 1112222111
Q ss_pred ------------hccHHHHHHhhcCCeEeeeccccCch---hhhhh-hccCHHHHHHHHHHHHHhcCCeEE-EcceeEEE
Q psy9395 66 ------------MGGIMAIATDKSGIQFRILNSSKGAA---VRATR-AQVDRILYKQAIRFYLENQLNLYL-FQEEVDDL 128 (637)
Q Consensus 66 ------------~gg~~~~~~~~~gi~~~~l~~~~gp~---~~~~~-~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i 128 (637)
-......|++..|+.+..+....+.. .+.+. .......+...|.+.+++ .++++ +++.|++|
T Consensus 138 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~-~gv~i~~~t~v~~l 216 (506)
T PRK06481 138 TNDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQE-RKIPLFVNADVTKI 216 (506)
T ss_pred CCCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHH-cCCeEEeCCeeEEE
Confidence 11223467777888876432111110 00110 011223466777777776 67888 59999999
Q ss_pred EEeCCeEEEEEEe--cc--eEEEeceEEEecccccCC
Q psy9395 129 IIKTNKILGVVTK--IG--IKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 129 ~~~~~~v~gV~~~--~g--~~i~a~~VIlAtG~~~~~ 161 (637)
..+++++.+|... ++ ..+.|+.||+|||+|...
T Consensus 217 ~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 217 TEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred EecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 8777888888764 32 468999999999998543
No 15
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.65 E-value=7.5e-15 Score=166.31 Aligned_cols=165 Identities=22% Similarity=0.282 Sum_probs=101.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch------------hhHHHH-----------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK------------SHLVKE----------- 62 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~------------~~l~~e----------- 62 (637)
++||+|||||.||++||+.|++.|.+|+|+||.....+ .+..+.||+.. ..+...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g--~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS--HSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC--cchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 48999999999999999999999999999999743222 22222333220 011111
Q ss_pred -----HHHhccHHHHHHhhcCCeEeeec-c------ccCchhhhhhhc----cCHHHHHHHHHHHHHhcCCeEEE-ccee
Q psy9395 63 -----IDAMGGIMAIATDKSGIQFRILN-S------SKGAAVRATRAQ----VDRILYKQAIRFYLENQLNLYLF-QEEV 125 (637)
Q Consensus 63 -----l~~~gg~~~~~~~~~gi~~~~l~-~------~~gp~~~~~~~~----~d~~~~~~~l~~~l~~~~gv~i~-~~~V 125 (637)
+-.-......|.+..|+.|.... . ..+.. .++.. .....+...+.+.+.+ .+++++ ++.+
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~--~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~~ 159 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQT--YPRTRFVGDKTGMALLHTLFERTSG-LNVDFYNEWFS 159 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCcc--CCeeEecCCCCHHHHHHHHHHHHHh-CCCEEEeCcEE
Confidence 11111122356777888885421 1 01111 11111 1123456667776766 588885 8899
Q ss_pred EEEEEeCCeEEEEEEec---c--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 126 DDLIIKTNKILGVVTKI---G--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 126 ~~i~~~~~~v~gV~~~~---g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
++|..++|+|+||...+ | ..+.|+.||+|||++. .++ .....+.+.+|++
T Consensus 160 ~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~--~l~-~~~~~~~~~tGDG 214 (566)
T PRK06452 160 LDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG--MLY-RHTTNSYINTGDG 214 (566)
T ss_pred EEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc--ccc-CCCCCCCCcChHH
Confidence 99998889999988653 3 3689999999999983 222 2223334556666
No 16
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.65 E-value=1.1e-13 Score=157.79 Aligned_cols=152 Identities=26% Similarity=0.326 Sum_probs=95.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch----------h-hHHHHHHH---------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK----------S-HLVKEIDA--------- 65 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~----------~-~l~~el~~--------- 65 (637)
++||+|||||.||++||+.|++.|++|+|+||.....+ .+..+.||++. . ++...+..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g--~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS--HTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc--chhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 58999999999999999999999999999999633222 22233333321 0 11111111
Q ss_pred ------hccHHHHHHhhcCCeEeeecc-----c--cCchh---h---hhhh--cc--CHHHHHHHHHHHHHhcCCeEEE-
Q psy9395 66 ------MGGIMAIATDKSGIQFRILNS-----S--KGAAV---R---ATRA--QV--DRILYKQAIRFYLENQLNLYLF- 121 (637)
Q Consensus 66 ------~gg~~~~~~~~~gi~~~~l~~-----~--~gp~~---~---~~~~--~~--d~~~~~~~l~~~l~~~~gv~i~- 121 (637)
-......|.+..|+.|..... . .+... + ..|. .. ....+...|.+.+.+ .+++++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLK-HNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhh-cCCEEEE
Confidence 111223566778888754211 0 01100 0 0111 01 123466777777776 688885
Q ss_pred cceeEEEEEeC-CeEEEEEEe---cc--eEEEeceEEEecccccC
Q psy9395 122 QEEVDDLIIKT-NKILGVVTK---IG--IKFFSKTVILTTGTFLN 160 (637)
Q Consensus 122 ~~~V~~i~~~~-~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~ 160 (637)
++.|++|..++ ++|.||... +| ..+.|+.||+|||++.+
T Consensus 169 ~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 169 EYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred eEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 88999998775 789998752 44 37899999999999843
No 17
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.64 E-value=2.8e-14 Score=162.83 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=103.6
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch----------h----------------h
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK----------S----------------H 58 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~----------~----------------~ 58 (637)
.++||+|||||.||++||+.|++.|++|+|+||... ....+..+.||++. . .
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~--~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~ 105 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP--TRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQD 105 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC--CCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 358999999999999999999999999999999743 22233334444321 0 1
Q ss_pred HHHHHHHhccHHHHHHhhcCCeEeeecc-c------cCchh------hhhhhc--c--CHHHHHHHHHHHHHhcCCeEEE
Q psy9395 59 LVKEIDAMGGIMAIATDKSGIQFRILNS-S------KGAAV------RATRAQ--V--DRILYKQAIRFYLENQLNLYLF 121 (637)
Q Consensus 59 l~~el~~~gg~~~~~~~~~gi~~~~l~~-~------~gp~~------~~~~~~--~--d~~~~~~~l~~~l~~~~gv~i~ 121 (637)
+++.+-.-......|....|+.|..... . .+... ...+.. . ....+...|.+.+.+ .+++++
T Consensus 106 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~ 184 (617)
T PTZ00139 106 AIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK-YDCNFF 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh-CCCEEE
Confidence 1111111112234677788998864211 0 11100 001110 1 124567777777776 688885
Q ss_pred -cceeEEEEE-eCCeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 122 -QEEVDDLII-KTNKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 122 -~~~V~~i~~-~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
++.+++|.. ++++|.||... +| ..+.|+.||+|||++.+ ++. ....+.+.+|++
T Consensus 185 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~--~~~-~~t~~~~~tGdG 245 (617)
T PTZ00139 185 IEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR--AYF-SCTSAHTCTGDG 245 (617)
T ss_pred eceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc--ccC-CcCCCCCcccHH
Confidence 889999987 67889998752 45 47899999999999833 221 122334456665
No 18
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.64 E-value=1.2e-14 Score=162.11 Aligned_cols=167 Identities=23% Similarity=0.200 Sum_probs=104.1
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hh----------------hHHH
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KS----------------HLVK 61 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~----------------~l~~ 61 (637)
++||+|||||.||++||+.|++.|. |+|+||.....| .+..+.|++. .. .+++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g--~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~ 78 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG--NSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVE 78 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC--cchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHH
Confidence 4899999999999999999999998 999999743332 2222333321 11 1111
Q ss_pred HHHHhccHHHHHHhhcCCeEeeecccc-----Cchhhhhhh----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEe
Q psy9395 62 EIDAMGGIMAIATDKSGIQFRILNSSK-----GAAVRATRA----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIK 131 (637)
Q Consensus 62 el~~~gg~~~~~~~~~gi~~~~l~~~~-----gp~~~~~~~----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~ 131 (637)
.+-.-......|....|+.|....... ......++. ..+...+...|.+.+++.++++++ ++.|+++..+
T Consensus 79 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~ 158 (488)
T TIGR00551 79 FVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE 158 (488)
T ss_pred HHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc
Confidence 111112223467777888875422100 000001111 113346777888888766789985 8899999877
Q ss_pred CCeEEEEEEec-c--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 132 TNKILGVVTKI-G--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 132 ~~~v~gV~~~~-g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
++++.||.+.+ + ..+.|+.||+|||++..-. .....+.+.+|++
T Consensus 159 ~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~---~~~~~~~~~tGdG 205 (488)
T TIGR00551 159 TGRVVGVWVWNRETVETCHADAVVLATGGAGKLY---QYTTNPKISTGDG 205 (488)
T ss_pred CCEEEEEEEEECCcEEEEEcCEEEECCCcccCCC---CCcCCCCccCcHH
Confidence 88888887654 2 4789999999999985421 1123345556665
No 19
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.63 E-value=9.7e-15 Score=167.50 Aligned_cols=170 Identities=18% Similarity=0.239 Sum_probs=99.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCcc-------------chh-hHHHHHHH------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGI-------------GKS-HLVKEIDA------ 65 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~-------------~~~-~l~~el~~------ 65 (637)
.+||+|||||.||+.||+.|++.|++|+|||+.....+ .+..+.||+ ... ++...+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s--~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D 82 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS--HSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD 82 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc--chHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence 48999999999999999999999999999998643222 111222221 111 11111111
Q ss_pred ---------hccHHHHHHhhcCCeEeeeccc--------------------------cCchhhhhhh--ccC--HHHHHH
Q psy9395 66 ---------MGGIMAIATDKSGIQFRILNSS--------------------------KGAAVRATRA--QVD--RILYKQ 106 (637)
Q Consensus 66 ---------~gg~~~~~~~~~gi~~~~l~~~--------------------------~gp~~~~~~~--~~d--~~~~~~ 106 (637)
-......|....|+.|...... .+.....++. ..| ...+..
T Consensus 83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~ 162 (657)
T PRK08626 83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY 162 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence 1112235666677776432100 0000000000 011 123445
Q ss_pred HHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCccccch
Q psy9395 107 AIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFST 180 (637)
Q Consensus 107 ~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~~~ 180 (637)
.|.+.+.+ .+++++ ++.|++|..+++++.|+... +| ..+.|+.||+|||++.+ ++ ...+.+.+.+|++..
T Consensus 163 ~L~~~~~~-~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~--~y-~~ttn~~~~tGdG~~ 238 (657)
T PRK08626 163 AVDNEAIK-LGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR--IY-KVTTNAVICEGIGAA 238 (657)
T ss_pred HHHHHHHh-CCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC--CC-CCCCCCCCcChHHHH
Confidence 56666665 688886 88999999888899998764 45 35789999999999843 22 123344556676633
Q ss_pred H
Q psy9395 181 T 181 (637)
Q Consensus 181 ~ 181 (637)
.
T Consensus 239 m 239 (657)
T PRK08626 239 I 239 (657)
T ss_pred H
Confidence 3
No 20
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.63 E-value=2.4e-14 Score=157.17 Aligned_cols=151 Identities=22% Similarity=0.219 Sum_probs=93.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-------hhhHHHH----------------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-------KSHLVKE---------------- 62 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-------~~~l~~e---------------- 62 (637)
++||+|||+|.||++||+.|+ .|++|+||||.....|.. ..+.||+. ...+++.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s--~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT--YLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch--HHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 499999999999999999985 699999999974332221 11222221 1111111
Q ss_pred HHHhccHHHHHHhhcCCeEeeeccc----cCchhhhhhh----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCC
Q psy9395 63 IDAMGGIMAIATDKSGIQFRILNSS----KGAAVRATRA----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTN 133 (637)
Q Consensus 63 l~~~gg~~~~~~~~~gi~~~~l~~~----~gp~~~~~~~----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~ 133 (637)
+-.-......|....|+.|...... ........+. ......+...|.+.+.+..+++++ ++.|++|..+++
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~ 160 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN 160 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC
Confidence 1111122346667778877542210 0000001111 112345667777777655789985 999999988788
Q ss_pred eEEEEEE-ecce--EEEeceEEEeccccc
Q psy9395 134 KILGVVT-KIGI--KFFSKTVILTTGTFL 159 (637)
Q Consensus 134 ~v~gV~~-~~g~--~i~a~~VIlAtG~~~ 159 (637)
+++||.. .++. .+.|+.||+|||++.
T Consensus 161 ~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 161 TCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 8888663 3443 689999999999973
No 21
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.63 E-value=2.2e-14 Score=163.55 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=95.9
Q ss_pred cccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcc------cccCCCCc-cchhhHHHHHHH-----------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQM------SCNPSIGG-IGKSHLVKEIDA----------- 65 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~------~cn~s~gg-~~~~~l~~el~~----------- 65 (637)
.+||+|||||.||++||+.|++. |.+|+|||+.....+.. .+|...+- .......+.+..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 48999999999999999999998 99999999974321111 01111100 011112222111
Q ss_pred -----hccHHHHHHhhcCCeEeeec-cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEE
Q psy9395 66 -----MGGIMAIATDKSGIQFRILN-SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGV 138 (637)
Q Consensus 66 -----~gg~~~~~~~~~gi~~~~l~-~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV 138 (637)
-......|++..|+.|.... +...+.. ..+..++...+...+.+.+++.++++++ ++.|+++..++++++||
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g-~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv 169 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRG-RWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGA 169 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccC-CccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 11223466778899885422 1111110 0011234556777777777765668985 88999998888888887
Q ss_pred EE---ecc--eEEEeceEEEeccccc
Q psy9395 139 VT---KIG--IKFFSKTVILTTGTFL 159 (637)
Q Consensus 139 ~~---~~g--~~i~a~~VIlAtG~~~ 159 (637)
.. .++ ..+.|+.||+|||++.
T Consensus 170 ~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 170 VGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred EEEEccCCcEEEEECCEEEECCCchh
Confidence 54 244 3789999999999984
No 22
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.63 E-value=2.4e-14 Score=162.81 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=94.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCC---CcEEEEccCCCCCCcccccCCCCccc----------hh---------------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMG---QKTLLLSHNIDTIGQMSCNPSIGGIG----------KS--------------- 57 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G---~~V~LiE~~~~~~G~~~cn~s~gg~~----------~~--------------- 57 (637)
++||+|||||.||++||+.|++.| .+|+|+||.....+ .+..+.||++ ..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~--~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS--HSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC--CceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 489999999999999999999998 89999999743222 2223333321 10
Q ss_pred -hHHHHHHHhccHHHHHHhhcCCeEeeecc-c------cCchhhhhhh--ccC--HHHHHHHHHHHHHhcCCeEEE-cce
Q psy9395 58 -HLVKEIDAMGGIMAIATDKSGIQFRILNS-S------KGAAVRATRA--QVD--RILYKQAIRFYLENQLNLYLF-QEE 124 (637)
Q Consensus 58 -~l~~el~~~gg~~~~~~~~~gi~~~~l~~-~------~gp~~~~~~~--~~d--~~~~~~~l~~~l~~~~gv~i~-~~~ 124 (637)
.+++.+-........|++..|+.|..... . .+.. .++. ..+ ...+...|.+.+.+..+++++ ++.
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~--~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~ 160 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMS--FPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHF 160 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcc--cceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCE
Confidence 11111111112234677788998864221 0 1111 1111 011 234566667766655788885 889
Q ss_pred eEEEEEeCCeEEEEEEe---cce--EEEeceEEEeccccc
Q psy9395 125 VDDLIIKTNKILGVVTK---IGI--KFFSKTVILTTGTFL 159 (637)
Q Consensus 125 V~~i~~~~~~v~gV~~~---~g~--~i~a~~VIlAtG~~~ 159 (637)
|+++..+++++.||... +|. .+.|+.||+|||++.
T Consensus 161 v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 161 VTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred EEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 99998888888887652 453 689999999999974
No 23
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.63 E-value=2.2e-14 Score=159.08 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=93.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hhhHH-HHHHH------------
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KSHLV-KEIDA------------ 65 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~~l~-~el~~------------ 65 (637)
+||+|||||.||++||+.|++.|++|+|+|+.. ..+.. ..+.+|+. ..... ..+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~-~~~~s--~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 78 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI-KKSNS--YLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWN 78 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC-CCCCc--HHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 699999999999999999999999999999963 22111 11223321 11111 11111
Q ss_pred ---hccHHHHHHhhcCCeEeeeccccCchhhhh-h-hccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEE
Q psy9395 66 ---MGGIMAIATDKSGIQFRILNSSKGAAVRAT-R-AQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVT 140 (637)
Q Consensus 66 ---~gg~~~~~~~~~gi~~~~l~~~~gp~~~~~-~-~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~ 140 (637)
-......|....|+.|.......+...... . .......+.+.+.+.+++ .+++++...++++..+++++.+|.+
T Consensus 79 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~v~~l~~~~g~v~Gv~~ 157 (466)
T PRK08401 79 VISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARE-LGVNFIRGFAEELAIKNGKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHh-cCCEEEEeEeEEEEeeCCEEEEEEE
Confidence 011223566778888753211111110000 0 011224577778888876 6888876689998877888888877
Q ss_pred ecceEEEeceEEEecccccC
Q psy9395 141 KIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 141 ~~g~~i~a~~VIlAtG~~~~ 160 (637)
++..+.|+.||+|||+|..
T Consensus 158 -~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 -DGELLKFDATVIATGGFSG 176 (466)
T ss_pred -CCEEEEeCeEEECCCcCcC
Confidence 4568999999999999854
No 24
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.62 E-value=5.4e-14 Score=156.30 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=96.1
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCC-C-Cccc------ccCCCCc------cchhhHHHHHHHhc---
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDT-I-GQMS------CNPSIGG------IGKSHLVKEIDAMG--- 67 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~-~-G~~~------cn~s~gg------~~~~~l~~el~~~g--- 67 (637)
.++||||||||+||++||+.|++.|.+|+|||+.... . |... |..+... .....+++++....
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 3499999999999999999999999999999997431 2 2211 1111000 01112233322111
Q ss_pred -------------cHHHHHHhhcCCeEeeeccccC-chhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeC
Q psy9395 68 -------------GIMAIATDKSGIQFRILNSSKG-AAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKT 132 (637)
Q Consensus 68 -------------g~~~~~~~~~gi~~~~l~~~~g-p~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~ 132 (637)
.....|....|+.+........ +........-....+...+.+.+++ .+++++ +++|++|..++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~-~gv~i~~~t~v~~l~~~~ 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAER-LGVEIRYDAPVTALELDD 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEecC
Confidence 1223566778888765332111 0000000001124566677777776 678885 88999998888
Q ss_pred CeEEEEEEe--cc--eEEEeceEEEecccccCC
Q psy9395 133 NKILGVVTK--IG--IKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 133 ~~v~gV~~~--~g--~~i~a~~VIlAtG~~~~~ 161 (637)
+++++|.+. ++ ..++|+.||+|||++...
T Consensus 162 g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n 194 (466)
T PRK08274 162 GRFVGARAGSAAGGAERIRAKAVVLAAGGFESN 194 (466)
T ss_pred CeEEEEEEEccCCceEEEECCEEEECCCCCCCC
Confidence 889988774 22 478999999999997543
No 25
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.62 E-value=3.5e-14 Score=161.26 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=101.7
Q ss_pred cccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcccccCCCCccch--------hh----------------H
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQMSCNPSIGGIGK--------SH----------------L 59 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~~cn~s~gg~~~--------~~----------------l 59 (637)
.+||+|||||.||++||+.|++. |.+|+|+||.....| .+..+.||++. .. +
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g--~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS--HTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--ChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 48999999999999999999987 479999999743222 33333333321 11 1
Q ss_pred HHHHHHhccHHHHHHhhcCCeEeeecc-----ccCchhhhhhh--ccC--HHHHHHHHHHHHHhcCCeEEE-cceeEEEE
Q psy9395 60 VKEIDAMGGIMAIATDKSGIQFRILNS-----SKGAAVRATRA--QVD--RILYKQAIRFYLENQLNLYLF-QEEVDDLI 129 (637)
Q Consensus 60 ~~el~~~gg~~~~~~~~~gi~~~~l~~-----~~gp~~~~~~~--~~d--~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~ 129 (637)
++.+-.-......|.+..|+.|..... .........|. ..+ ...+...|.+.+.+.++++++ ++.++++.
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 111111112234667788998854211 00011001111 111 234666666666665788885 88999999
Q ss_pred EeCCeEEEEEE---ecc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 130 IKTNKILGVVT---KIG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 130 ~~~~~v~gV~~---~~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
.+++++.||.. .+| ..+.|+.||+|||++.. ++ .....+.+.+|++
T Consensus 162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~--l~-~~~t~~~~~tGdG 212 (582)
T PRK09231 162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR--VY-RYNTNGGIVTGDG 212 (582)
T ss_pred EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC--CC-CCCCCCCCCccHH
Confidence 88888988765 345 47899999999999743 21 1122334456666
No 26
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=1.8e-14 Score=164.90 Aligned_cols=168 Identities=21% Similarity=0.272 Sum_probs=100.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-----------hh----------------h
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-----------KS----------------H 58 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-----------~~----------------~ 58 (637)
++||+|||||.||++||+.|++.|.+|+|+|+.. ..+.+.+..+.||+. .. .
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~-~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~ 113 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD-SPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREA 113 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC-CCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHH
Confidence 4899999999999999999999999999999853 333222222223321 01 1
Q ss_pred HHHHHHHhccHHHHHHhhcCCeEeeec-cc----cCchhhhhhhc--c--CHHHH----HHHHHHHHHhcCCeEEE-cce
Q psy9395 59 LVKEIDAMGGIMAIATDKSGIQFRILN-SS----KGAAVRATRAQ--V--DRILY----KQAIRFYLENQLNLYLF-QEE 124 (637)
Q Consensus 59 l~~el~~~gg~~~~~~~~~gi~~~~l~-~~----~gp~~~~~~~~--~--d~~~~----~~~l~~~l~~~~gv~i~-~~~ 124 (637)
+++.+-........|+...|+.|.... .. ........|.. . ....+ .+.|.+.+++ .+++++ ++.
T Consensus 114 lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~-~gV~i~~~t~ 192 (640)
T PRK07573 114 NVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAA-GTVKMYTRTE 192 (640)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHh-cCCEEEeceE
Confidence 122221122234467778899885311 10 00000000110 0 01112 2445556655 789985 899
Q ss_pred eEEEEEeCCeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 125 VDDLIIKTNKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 125 V~~i~~~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
|++|..++++|+||... +| ..+.|+.||+|||++.+ ++. ....+.+.+|++
T Consensus 193 v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~--~~~-~tt~~~~~tGdG 248 (640)
T PRK07573 193 MLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN--VFY-LSTNAMGSNATA 248 (640)
T ss_pred EEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc--CCC-CCCCCCCcCcHH
Confidence 99998888899999875 34 36899999999999844 221 123345566665
No 27
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.62 E-value=3.2e-14 Score=151.12 Aligned_cols=167 Identities=25% Similarity=0.298 Sum_probs=110.2
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch---------hhHHHHH---------------
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK---------SHLVKEI--------------- 63 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~---------~~l~~el--------------- 63 (637)
||+|||+|.|||++|+.|++. .+|+|+.|. ..+..+.-.+.||++. .|+...+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~--~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~i 85 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKG--PLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFI 85 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCC--CCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 999999999999999999998 999999996 3444434455666642 1222222
Q ss_pred HHhccHHHHHHhhcCCeEeeeccc-------cCchhhhhhh----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEe
Q psy9395 64 DAMGGIMAIATDKSGIQFRILNSS-------KGAAVRATRA----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIK 131 (637)
Q Consensus 64 ~~~gg~~~~~~~~~gi~~~~l~~~-------~gp~~~~~~~----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~ 131 (637)
-.-+....++....|+.|..-... .+.. ..|. ......+...|.+.++++++|+++ +..+.+|..+
T Consensus 86 v~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS--~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~ 163 (518)
T COG0029 86 VSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHS--RRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE 163 (518)
T ss_pred HHhHHHHHHHHHHcCCCCcCCCCCceeeeeecccC--CceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc
Confidence 222223446667788887543311 1111 0111 112246778888889888999997 5699999988
Q ss_pred CC-eEEEEEEecc----eEEEeceEEEecccccCCceeecccccCCCCccccchHH
Q psy9395 132 TN-KILGVVTKIG----IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 182 (637)
Q Consensus 132 ~~-~v~gV~~~~g----~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~~~~~ 182 (637)
++ .+.||.+.+. .++.|+.||+|||+. +.++ ..++.|.+..|++-+..
T Consensus 164 ~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~--g~ly-~~TTNp~~~~GdGIamA 216 (518)
T COG0029 164 DGIGVAGVLVLNRNGELGTFRAKAVVLATGGL--GGLY-AYTTNPKGSTGDGIAMA 216 (518)
T ss_pred CCceEeEEEEecCCCeEEEEecCeEEEecCCC--cccc-cccCCCccccccHHHHH
Confidence 88 4558887532 588999999999996 3333 23456677788874433
No 28
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=1.4e-13 Score=157.46 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=93.6
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-----------hhh----------------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-----------KSH---------------- 58 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-----------~~~---------------- 58 (637)
++||+|||||.||++||+.|++.|++|+|||+... .+ ..+..+.||+. ...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~-~~-g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF-GK-AHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC-CC-CcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 48999999999999999999999999999999742 22 11222222211 111
Q ss_pred HHHHHHHhccHHHHHHhhcCCeEeeeccc-----cCchhhhhhhc----cCHHHHHHHHHHHHHhcC-------C-----
Q psy9395 59 LVKEIDAMGGIMAIATDKSGIQFRILNSS-----KGAAVRATRAQ----VDRILYKQAIRFYLENQL-------N----- 117 (637)
Q Consensus 59 l~~el~~~gg~~~~~~~~~gi~~~~l~~~-----~gp~~~~~~~~----~d~~~~~~~l~~~l~~~~-------g----- 117 (637)
+++.+-........|++..|+.|...... .......++.. .....+...|.+.+.+.+ |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 11111111122235677889988643210 00010011110 112346666777666542 4
Q ss_pred eEEE-cceeEEEEEeCCeEEEEEEe---cc--eEEEeceEEEeccccc
Q psy9395 118 LYLF-QEEVDDLIIKTNKILGVVTK---IG--IKFFSKTVILTTGTFL 159 (637)
Q Consensus 118 v~i~-~~~V~~i~~~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~ 159 (637)
++++ ++.|+++..+++++.|+... +| ..+.|+.||+|||++.
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 8885 88999998888888887652 44 3689999999999973
No 29
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=2.1e-14 Score=163.11 Aligned_cols=166 Identities=24% Similarity=0.282 Sum_probs=101.5
Q ss_pred ccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcccccCCCCccch-----------h----------------
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQMSCNPSIGGIGK-----------S---------------- 57 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~~cn~s~gg~~~-----------~---------------- 57 (637)
+||+|||||.||++||+.|++. |++|+|+||... .+. .+..+.||+.. .
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~-~gg-~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP-IRS-HSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC-Cch-hhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 8999999999999999999987 489999999732 221 22223333210 0
Q ss_pred hHHHHHHHhccHHHHHHhhcCCeEeeeccc-------cCchhhhhhhccC--HHHHHHHHHHHHHhcCCeEEE-cceeEE
Q psy9395 58 HLVKEIDAMGGIMAIATDKSGIQFRILNSS-------KGAAVRATRAQVD--RILYKQAIRFYLENQLNLYLF-QEEVDD 127 (637)
Q Consensus 58 ~l~~el~~~gg~~~~~~~~~gi~~~~l~~~-------~gp~~~~~~~~~d--~~~~~~~l~~~l~~~~gv~i~-~~~V~~ 127 (637)
.+++.+.........|.+..|+.|...... .+..........+ ...+...|.+.+.+ .+++++ ++.|++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~t~v~~ 160 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRR-YGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhh-CCCEEEeCcEEEE
Confidence 111111111122335667789888653211 1111100000112 24567777777776 689985 889999
Q ss_pred EEEeCCeEEEEEE---ecc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 128 LIIKTNKILGVVT---KIG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 128 i~~~~~~v~gV~~---~~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
+..+++++.|+.. .+| ..+.|+.||+|||++.+. + .....+.+.+|++
T Consensus 161 L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~--~-~~~~~~~~~tGdG 213 (575)
T PRK05945 161 LILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV--F-NTTSNDYASTGDG 213 (575)
T ss_pred EEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC--C-CCCCCCCCCccHH
Confidence 9888888888864 244 368999999999998432 1 2233445566665
No 30
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=4.3e-14 Score=159.75 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=98.2
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hhhHHHHH--------------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KSHLVKEI-------------- 63 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~~l~~el-------------- 63 (637)
.+||+|||||.||++||+.| +.|.+|+|+|+.....|. .+..+.|++. ....+.++
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG-~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSG-CTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCc-cccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 48999999999999999999 899999999996421221 1112222221 11112111
Q ss_pred --HHhccHHHHHHhhcCCeEeeecc-------ccCchhhhhhh----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEE
Q psy9395 64 --DAMGGIMAIATDKSGIQFRILNS-------SKGAAVRATRA----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLI 129 (637)
Q Consensus 64 --~~~gg~~~~~~~~~gi~~~~l~~-------~~gp~~~~~~~----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~ 129 (637)
-........|.+..|++|..... ..+.. .++. ......+...|.+.+.+ .+++++ ++.|+++.
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~--~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~t~v~~Li 161 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQS--FNRTCYAGDRTGHEMMMGLMEYLIK-ERIKILEEVMAIKLI 161 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeE--cCeEEECCCCCHHHHHHHHHHHHhc-CCCEEEeCeEeeeeE
Confidence 11112223566778888753211 01111 0111 01123466677777776 789985 99999998
Q ss_pred EeCCe-EEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 130 IKTNK-ILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 130 ~~~~~-v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
.++++ ++||... +| ..+.|+.||+|||++.. ++ .....+.+.+|++
T Consensus 162 ~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~--~~-~~~~~~~~~tGdG 213 (543)
T PRK06263 162 VDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ--LY-PITSNPIQKTGDG 213 (543)
T ss_pred EeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC--CC-CCCCCCCCCCcHH
Confidence 87665 8887653 44 36899999999999843 11 1122334456665
No 31
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.62 E-value=5.5e-14 Score=160.56 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=102.2
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch----------h----------------h
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK----------S----------------H 58 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~----------~----------------~ 58 (637)
.++||+|||||.||+.||+.|++.|++|+|+||.....| .+..+.||++. . .
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g--~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~ 126 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS--HTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 126 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC--chHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHH
Confidence 358999999999999999999999999999999743222 22333333211 0 1
Q ss_pred HHHHHHHhccHHHHHHhhcCCeEeeec-c----c--cCchhh------hhhh----ccCHHHHHHHHHHHHHhcCCeEEE
Q psy9395 59 LVKEIDAMGGIMAIATDKSGIQFRILN-S----S--KGAAVR------ATRA----QVDRILYKQAIRFYLENQLNLYLF 121 (637)
Q Consensus 59 l~~el~~~gg~~~~~~~~~gi~~~~l~-~----~--~gp~~~------~~~~----~~d~~~~~~~l~~~l~~~~gv~i~ 121 (637)
+++.+-.-......|.+..|++|.... + . .+.... ..+. ......+...|.+.+.+ .+++++
T Consensus 127 lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~ 205 (635)
T PLN00128 127 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMK-HNTQFF 205 (635)
T ss_pred HHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHh-CCCEEE
Confidence 111111111223366777888885321 1 0 111000 0011 01123466777777766 688885
Q ss_pred -cceeEEEEEe-CCeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCccccc
Q psy9395 122 -QEEVDDLIIK-TNKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS 179 (637)
Q Consensus 122 -~~~V~~i~~~-~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~~ 179 (637)
++.+++|..+ +++|.||... +| ..+.|+.||+|||++.. ++. ....+.+.+|++.
T Consensus 206 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~--~~~-~tt~~~~~tGDG~ 267 (635)
T PLN00128 206 VEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR--AYF-SATSAHTCTGDGN 267 (635)
T ss_pred EeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc--ccc-cccCCCCCCCHHH
Confidence 8899998876 6789998763 35 47899999999999843 221 1233455667763
No 32
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.61 E-value=1.7e-14 Score=161.62 Aligned_cols=167 Identities=22% Similarity=0.218 Sum_probs=100.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hhhHHHHHHH------------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KSHLVKEIDA------------ 65 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~~l~~el~~------------ 65 (637)
++||+|||||.||++||+.|+ |.+|+|+|+.....+ +++..+.||+. ...++.++-.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~g-g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v~ 85 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEG-ASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVAA 85 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCC-cchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 589999999999999999997 679999999743122 22223333331 1111222111
Q ss_pred ----hccHHHHHHhhcCCeEeeecc-ccCc----hhhhhhh-----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEE
Q psy9395 66 ----MGGIMAIATDKSGIQFRILNS-SKGA----AVRATRA-----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLII 130 (637)
Q Consensus 66 ----~gg~~~~~~~~~gi~~~~l~~-~~gp----~~~~~~~-----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~ 130 (637)
-......|+...|+.|..... .... .....+. ......+...|.+.+.+.++++++ ++.|++|..
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~ 165 (513)
T PRK07512 86 LITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLV 165 (513)
T ss_pred HHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhheee
Confidence 112234677778888754211 1000 0000111 012345677777777765689986 778999987
Q ss_pred eCCeEEEEEEec-c--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 131 KTNKILGVVTKI-G--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 131 ~~~~v~gV~~~~-g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
++++++||.+.+ + ..+.|+.||+|||++..- + .....+.+.+|++
T Consensus 166 ~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~~--~-~~~~~~~~~tGDG 213 (513)
T PRK07512 166 DDGAVAGVLAATAGGPVVLPARAVVLATGGIGGL--Y-AVTTNPAGAFGQG 213 (513)
T ss_pred cCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcCC--C-CCCCCCCCCchHH
Confidence 788899987654 3 368999999999998331 1 1122345566666
No 33
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.61 E-value=7.5e-14 Score=158.30 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=103.1
Q ss_pred cccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcccccCCCCccc--------hh----------------hH
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQMSCNPSIGGIG--------KS----------------HL 59 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~----------------~l 59 (637)
++||+|||||.||++||+.|++. |.+|+|+||.....+ .+..+.||++ .. .+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~--~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~l 80 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS--HTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDV 80 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--CchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHH
Confidence 48999999999999999999987 589999999743222 2222223321 11 11
Q ss_pred HHHHHHhccHHHHHHhhcCCeEeeecc-c----cCchhhhhhh--cc--CHHHHHHHHHHHHHhcCCeEEE-cceeEEEE
Q psy9395 60 VKEIDAMGGIMAIATDKSGIQFRILNS-S----KGAAVRATRA--QV--DRILYKQAIRFYLENQLNLYLF-QEEVDDLI 129 (637)
Q Consensus 60 ~~el~~~gg~~~~~~~~~gi~~~~l~~-~----~gp~~~~~~~--~~--d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~ 129 (637)
++.+-........|.+..|++|..... . ........|. .. .-..+...|.+.+.+.++++++ ++.++++.
T Consensus 81 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 160 (580)
T TIGR01176 81 VEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLL 160 (580)
T ss_pred HHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEE
Confidence 222222222334667788998864321 0 0011001111 11 2245677777777665788886 88999999
Q ss_pred EeCCeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 130 IKTNKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 130 ~~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
.+++++.||... +| ..+.|+.||+|||++.. ++ +....+.+.+|++
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~--~~-~~~t~~~~~tGdG 211 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR--VY-PFNTNGGIVTGDG 211 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc--cc-cCCCCCCCcCcHH
Confidence 888999988752 45 47899999999999743 21 1222334556665
No 34
>PRK07121 hypothetical protein; Validated
Probab=99.60 E-value=1.8e-13 Score=153.13 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=96.0
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCC----Ccc----------chhhHHHHHHHh----
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSI----GGI----------GKSHLVKEIDAM---- 66 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~----gg~----------~~~~l~~el~~~---- 66 (637)
.++||||||+|.||++||+.|++.|++|+||||.....|...++... ++. ....+.+.+...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~~ 98 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGPG 98 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 46999999999999999999999999999999975433332221100 011 111222222111
Q ss_pred ------------ccHHHHHHhhcCCeEeeeccc---cCc------------hh-----------hhhhh----cc-CHHH
Q psy9395 67 ------------GGIMAIATDKSGIQFRILNSS---KGA------------AV-----------RATRA----QV-DRIL 103 (637)
Q Consensus 67 ------------gg~~~~~~~~~gi~~~~l~~~---~gp------------~~-----------~~~~~----~~-d~~~ 103 (637)
......|++..|+.|...... ..| .. +..+. .. +...
T Consensus 99 ~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (492)
T PRK07121 99 VDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGAM 178 (492)
T ss_pred CCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchHH
Confidence 112346677788887542100 000 00 00000 00 2345
Q ss_pred HHHHHHHHHHhcCCeEE-EcceeEEEEEe-CCeEEEEEEec-c--eEEEe-ceEEEecccccC
Q psy9395 104 YKQAIRFYLENQLNLYL-FQEEVDDLIIK-TNKILGVVTKI-G--IKFFS-KTVILTTGTFLN 160 (637)
Q Consensus 104 ~~~~l~~~l~~~~gv~i-~~~~V~~i~~~-~~~v~gV~~~~-g--~~i~a-~~VIlAtG~~~~ 160 (637)
+...|.+.+++ .++++ .++.|++|..+ ++++.||...+ + ..++| +.||+|||+|..
T Consensus 179 ~~~~L~~~~~~-~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 179 LMDPLAKRAAA-LGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHHHHh-CCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 67777777776 67888 59999999876 46888887753 2 36889 999999999865
No 35
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.60 E-value=3.8e-14 Score=159.77 Aligned_cols=169 Identities=21% Similarity=0.175 Sum_probs=101.8
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hhhHHHHHHH----------
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KSHLVKEIDA---------- 65 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~~l~~el~~---------- 65 (637)
+.++||+|||+|.||++||+.|++ |.+|+||||.....| .+..+.||+. ....+.++-.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg--~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~l 83 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTS--ASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEA 83 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCC--chhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 346999999999999999999975 999999999743222 2333334331 1111222111
Q ss_pred ------hccHHHHHHhhcCCeEeeecccc--C--chhhhhhhc--c--CHHHHHHHHHHHHHhcCCeEEE-cceeEEEEE
Q psy9395 66 ------MGGIMAIATDKSGIQFRILNSSK--G--AAVRATRAQ--V--DRILYKQAIRFYLENQLNLYLF-QEEVDDLII 130 (637)
Q Consensus 66 ------~gg~~~~~~~~~gi~~~~l~~~~--g--p~~~~~~~~--~--d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~ 130 (637)
-......|....|+.|...+... . .....++.. . ....+...|.+.+.+.++++++ ++.|++|..
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~ 163 (553)
T PRK07395 84 VRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWL 163 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhee
Confidence 11223466777899886432100 0 000011110 1 1235667777777665789985 889999987
Q ss_pred eC--CeEEEEEEe-cce--EEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 131 KT--NKILGVVTK-IGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 131 ~~--~~v~gV~~~-~g~--~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
++ ++|.||... +|. .+.|+.||+|||++.. ++ .....+.+.+|++
T Consensus 164 ~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~--~~-~~~tn~~~~tGdG 213 (553)
T PRK07395 164 EPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ--VF-AQTTNPAVSTGDG 213 (553)
T ss_pred cCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc--cc-CCccCccchhhHH
Confidence 63 789998764 343 5789999999999733 22 1123344566665
No 36
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.60 E-value=4.4e-14 Score=160.66 Aligned_cols=148 Identities=24% Similarity=0.325 Sum_probs=93.0
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-------h----h----------------hHH
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-------K----S----------------HLV 60 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-------~----~----------------~l~ 60 (637)
||+|||||.||++||+.|++.|++|+||||.....|. +..+.||+. . . .++
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~--s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v 78 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH--TVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAV 78 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc--chhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHH
Confidence 8999999999999999999999999999997432221 112222211 0 0 111
Q ss_pred HHHHHhccHHHHHHhhcCCeEeeeccc-------cCchhhhhhh----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEE
Q psy9395 61 KEIDAMGGIMAIATDKSGIQFRILNSS-------KGAAVRATRA----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDL 128 (637)
Q Consensus 61 ~el~~~gg~~~~~~~~~gi~~~~l~~~-------~gp~~~~~~~----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i 128 (637)
+.+-........|++..|+.|...... .++. ..+. ......+...|.+.+.+ .+++++ ++.|++|
T Consensus 79 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~--~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~v~~L 155 (566)
T TIGR01812 79 EYMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHS--KDRTCYAADKTGHALLHTLYEQCLK-LGVSFFNEYFALDL 155 (566)
T ss_pred HHHHHHHHHHHHHHHHcCCcceecCCCcEeeccccccc--cCeeEECCCCCHHHHHHHHHHHHHH-cCCEEEeccEEEEE
Confidence 111111122346677788887542110 1111 0111 11123466677777776 488885 8999999
Q ss_pred EEeCCeEEEEEEe---cc--eEEEeceEEEecccccC
Q psy9395 129 IIKTNKILGVVTK---IG--IKFFSKTVILTTGTFLN 160 (637)
Q Consensus 129 ~~~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~ 160 (637)
..+++++.||... +| ..+.|+.||+|||++..
T Consensus 156 ~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 156 IHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred EEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 8888899888753 45 36899999999999843
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.60 E-value=9.2e-14 Score=165.29 Aligned_cols=153 Identities=24% Similarity=0.281 Sum_probs=90.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCcc---------chhhHHHH-HHH----------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGI---------GKSHLVKE-IDA---------- 65 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~---------~~~~l~~e-l~~---------- 65 (637)
++||+|||||.||+.||+.+++.|.+|+|+||..... .+.+....+|+ .....+.. +..
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~-sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~v 91 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRH-SGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRTV 91 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccC-CCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHHH
Confidence 4899999999999999999999999999999974211 11111111121 11111111 111
Q ss_pred -----hccHHHHHHhhcCCeEeeeccccC--chhhhh-hh---ccCHHHHHHHHHHHHHhc---CCeEEE-cceeEEEEE
Q psy9395 66 -----MGGIMAIATDKSGIQFRILNSSKG--AAVRAT-RA---QVDRILYKQAIRFYLENQ---LNLYLF-QEEVDDLII 130 (637)
Q Consensus 66 -----~gg~~~~~~~~~gi~~~~l~~~~g--p~~~~~-~~---~~d~~~~~~~l~~~l~~~---~gv~i~-~~~V~~i~~ 130 (637)
-......|.+..|+.|........ ..+... .. ......+...|.+.+.++ .++.+. +..++++..
T Consensus 92 ~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~ 171 (897)
T PRK13800 92 YQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLT 171 (897)
T ss_pred HHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEe
Confidence 111234667788998864321100 000000 00 001234455555555543 367775 667888888
Q ss_pred eCCeEEEEEEe---cc--eEEEeceEEEeccccc
Q psy9395 131 KTNKILGVVTK---IG--IKFFSKTVILTTGTFL 159 (637)
Q Consensus 131 ~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~ 159 (637)
++|++.||... +| ..+.|+.||+|||++.
T Consensus 172 ~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 172 EGGRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred eCCEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 88899998752 45 3689999999999984
No 38
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.60 E-value=4.8e-14 Score=160.45 Aligned_cols=167 Identities=25% Similarity=0.268 Sum_probs=98.9
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch----------h-hH---------------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK----------S-HL--------------- 59 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~----------~-~l--------------- 59 (637)
++||+|||||.||++||+.|++.|++|+|||+.....| .+..+.||+.. . ++
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g--~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS--HTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--CchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 48999999999999999999999999999999643222 22222233210 0 11
Q ss_pred HHHHHHhccHHHHHHhhcCCeEeeecc-------ccCchh-----hhhhhc----cCHHHHHHHHHHHHHhcCCeEEE-c
Q psy9395 60 VKEIDAMGGIMAIATDKSGIQFRILNS-------SKGAAV-----RATRAQ----VDRILYKQAIRFYLENQLNLYLF-Q 122 (637)
Q Consensus 60 ~~el~~~gg~~~~~~~~~gi~~~~l~~-------~~gp~~-----~~~~~~----~d~~~~~~~l~~~l~~~~gv~i~-~ 122 (637)
++.+-.-......|....|+.|..... ..+... ...+.. .....+...|.+.+.+ .+++++ +
T Consensus 90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~-~gi~i~~~ 168 (591)
T PRK07057 90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVA-AKTQFFVE 168 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHh-cCCEEEeC
Confidence 111111111223566778888854211 011100 001110 1123466667776665 788885 8
Q ss_pred ceeEEEEEe-CCeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 123 EEVDDLIIK-TNKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 123 ~~V~~i~~~-~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
+.++++..+ ++++.||... +| ..+.|+.||+|||++.. ++ .....+.+.+|++
T Consensus 169 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~--~~-~~~t~~~~~tGdG 227 (591)
T PRK07057 169 WMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR--IF-AASTNAFINTGDG 227 (591)
T ss_pred cEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc--cc-CCcCCCCCcCcHH
Confidence 899999875 5789998763 34 36889999999999843 22 1112234556665
No 39
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.59 E-value=9.5e-14 Score=157.81 Aligned_cols=172 Identities=23% Similarity=0.276 Sum_probs=104.0
Q ss_pred CCCC-CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch----------h------------
Q psy9395 1 MLFK-SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK----------S------------ 57 (637)
Q Consensus 1 M~~~-~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~----------~------------ 57 (637)
|... .++||+|||||.||++||+.|++.|++|+|+||.....| .|..+.||+.. .
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g--~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~ 78 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS--HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDY 78 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC--ccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCC
Confidence 4433 358999999999999999999999999999999743222 23333333311 1
Q ss_pred ----hHHHHHHHhccHHHHHHhhcCCeEeeec-c------ccCchhh-----hhhhc--c--CHHHHHHHHHHHHHhcCC
Q psy9395 58 ----HLVKEIDAMGGIMAIATDKSGIQFRILN-S------SKGAAVR-----ATRAQ--V--DRILYKQAIRFYLENQLN 117 (637)
Q Consensus 58 ----~l~~el~~~gg~~~~~~~~~gi~~~~l~-~------~~gp~~~-----~~~~~--~--d~~~~~~~l~~~l~~~~g 117 (637)
.+++.+-.-......|.+..|++|.... + ..+.... ..|.. . ....+...|.+.+.+ .+
T Consensus 79 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~-~g 157 (588)
T PRK08958 79 IGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLK-NH 157 (588)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhh-cC
Confidence 1111111111223467778899885321 0 0111000 01110 1 123566667766665 68
Q ss_pred eEEE-cceeEEEEEe-CCeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 118 LYLF-QEEVDDLIIK-TNKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 118 v~i~-~~~V~~i~~~-~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
++++ ++.++++..+ +++|.||... +| ..+.|+.||+|||++.. ++. ....+.+.+|++
T Consensus 158 i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~--~~~-~~~~~~~~tGdG 222 (588)
T PRK08958 158 TTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR--IYQ-STTNAHINTGDG 222 (588)
T ss_pred CEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc--ccc-cccCCCCCCcHH
Confidence 8885 8899999875 7889998763 44 36889999999999843 221 122334566766
No 40
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.59 E-value=1.4e-13 Score=156.58 Aligned_cols=167 Identities=21% Similarity=0.232 Sum_probs=99.7
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch----------hhHHHH-HH---------
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK----------SHLVKE-ID--------- 64 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~----------~~l~~e-l~--------- 64 (637)
.++||+|||||.||++||+.|++. .+|+|+||... +...+..+.||+.. ...... +.
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~--~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~ 80 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP--TRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQD 80 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC--CCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHH
Confidence 458999999999999999999986 99999999742 22222223333211 001111 10
Q ss_pred ------HhccHHHHHHhhcCCeEeeecc-----ccCchhh-------hhhh--cc--CHHHHHHHHHHHHHhcCCeEEE-
Q psy9395 65 ------AMGGIMAIATDKSGIQFRILNS-----SKGAAVR-------ATRA--QV--DRILYKQAIRFYLENQLNLYLF- 121 (637)
Q Consensus 65 ------~~gg~~~~~~~~~gi~~~~l~~-----~~gp~~~-------~~~~--~~--d~~~~~~~l~~~l~~~~gv~i~- 121 (637)
.-......|.+..|++|..... ...+... ..+. .. ....+...|.+.+.+ .+++++
T Consensus 81 ~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gv~i~~ 159 (583)
T PRK08205 81 AAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVK-HGVEFFN 159 (583)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHh-cCCEEEe
Confidence 0011223667778888853211 0011100 0111 11 234567778777776 788885
Q ss_pred cceeEEEEEeC----CeEEEEEEe---cce--EEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 122 QEEVDDLIIKT----NKILGVVTK---IGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 122 ~~~V~~i~~~~----~~v~gV~~~---~g~--~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
++.|++|..++ +++.||... +|. .+.|+.||+|||++.+- + .....+.+.+|++
T Consensus 160 ~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~--~-~~~~~~~~~tGdG 222 (583)
T PRK08205 160 EFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV--Y-KTTSNAHTLTGDG 222 (583)
T ss_pred CCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc--C-CCcCCCCCCCcHH
Confidence 88999998765 789898753 443 68999999999998432 1 1122334556665
No 41
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.59 E-value=1.2e-13 Score=154.49 Aligned_cols=174 Identities=26% Similarity=0.326 Sum_probs=99.2
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCccc-----ccCCCCcc------chh-hHHHHHHH-------
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMS-----CNPSIGGI------GKS-HLVKEIDA------- 65 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~-----cn~s~gg~------~~~-~l~~el~~------- 65 (637)
.+|||||||||.|||.||+.++..|.+|+|+|+.....|... +|.+.+.. +.. ++...+..
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dq 84 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQ 84 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCH
Confidence 459999999999999999999999999999999754444321 12222111 111 11111111
Q ss_pred --------hccHHHHHHhhcCCeEeeec-c----ccCchhhhhhhc--cC--HHHHHHHHHHHHHhcCCeEEE-cceeEE
Q psy9395 66 --------MGGIMAIATDKSGIQFRILN-S----SKGAAVRATRAQ--VD--RILYKQAIRFYLENQLNLYLF-QEEVDD 127 (637)
Q Consensus 66 --------~gg~~~~~~~~~gi~~~~l~-~----~~gp~~~~~~~~--~d--~~~~~~~l~~~l~~~~gv~i~-~~~V~~ 127 (637)
....+..+++.+|+.|.... + +.+......+.. .+ ...+...+.+.+.+..+++++ +..+++
T Consensus 85 d~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~ 164 (562)
T COG1053 85 DAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLD 164 (562)
T ss_pred HHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhh
Confidence 11123356677777663221 1 111111111111 11 134566667777665677775 778999
Q ss_pred EEEeCCe-EEEEEE---ecc--eEEEeceEEEecccccCCceeecccccCCCCccccchH
Q psy9395 128 LIIKTNK-ILGVVT---KIG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTT 181 (637)
Q Consensus 128 i~~~~~~-v~gV~~---~~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~~~~ 181 (637)
+..++++ +.|+.. .+| ..++++.||+|||++ ++ .....+.....+|++...
T Consensus 165 l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~--g~-~~~~~t~~~~~tGdG~~m 221 (562)
T COG1053 165 LLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGA--GR-LYPYTTNAHIGTGDGVAM 221 (562)
T ss_pred heecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCc--eE-EEeccCCccccCCcHHHH
Confidence 9877554 777664 344 467889999999997 32 222223333345666333
No 42
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.58 E-value=6.7e-14 Score=156.75 Aligned_cols=165 Identities=22% Similarity=0.261 Sum_probs=98.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hhhHHHHHHHh-----------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KSHLVKEIDAM----------- 66 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~~l~~el~~~----------- 66 (637)
++||+|||+|.||++||+.|++ |.+|+|+|+..... ..|..+.|++. ....+.++-..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~--g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 79 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRN--SNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVR 79 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCC--CCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHH
Confidence 4899999999999999999987 99999999974322 23333344432 11112211111
Q ss_pred -----ccHHHHHHhhcCCeEeee-ccc----cCchhhhhhh-----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEE
Q psy9395 67 -----GGIMAIATDKSGIQFRIL-NSS----KGAAVRATRA-----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLII 130 (637)
Q Consensus 67 -----gg~~~~~~~~~gi~~~~l-~~~----~gp~~~~~~~-----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~ 130 (637)
......|....|+.|... ++. ........+. ......+.+.|.+.+. .+++++ ++.|+++..
T Consensus 80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~ 157 (510)
T PRK08071 80 YLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLII 157 (510)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheee
Confidence 111234566688888521 110 0000001111 1123456667776665 578885 889999988
Q ss_pred eCCeEEEEEEec--c--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 131 KTNKILGVVTKI--G--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 131 ~~~~v~gV~~~~--g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
+++++.||.+.+ | ..+.|+.||+|||++.. ++ .....+.+.+|++
T Consensus 158 ~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~--~~-~~~t~~~~~tGdG 206 (510)
T PRK08071 158 ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG--LY-AFTSNDKTITGDG 206 (510)
T ss_pred cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc--cc-cCCCCCCCcccHH
Confidence 888899887654 3 37899999999999843 11 1122334556655
No 43
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.58 E-value=7.6e-14 Score=157.38 Aligned_cols=181 Identities=23% Similarity=0.233 Sum_probs=107.6
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hhhHHHHHHHh--------
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KSHLVKEIDAM-------- 66 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~~l~~el~~~-------- 66 (637)
++.++||+|||||.||++||+.|++.|.+|+|+|+.....| ++..+.||+. ....++.+-..
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~ 90 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG--STRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPD 90 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC--chhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHH
Confidence 34468999999999999999999999999999999743222 2222233321 11112221111
Q ss_pred --------ccHHHHHHhhcCCeEeeec-cc----cCchhhhhhh-----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEE
Q psy9395 67 --------GGIMAIATDKSGIQFRILN-SS----KGAAVRATRA-----QVDRILYKQAIRFYLENQLNLYLF-QEEVDD 127 (637)
Q Consensus 67 --------gg~~~~~~~~~gi~~~~l~-~~----~gp~~~~~~~-----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~ 127 (637)
......|....|+.|.... +. ........+. ......+...|.+.+++ .+++++ ++.|++
T Consensus 91 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~-~gV~i~~~~~v~~ 169 (541)
T PRK07804 91 AVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRA-DPLDIREHALALD 169 (541)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHh-CCCEEEECeEeee
Confidence 1122356677888875321 10 0000001111 11234577778888876 458885 889999
Q ss_pred EEEeC-CeEEEEEEe-------cc-eEEEeceEEEecccccCCceeecccccCCCCccccchHHHHHHHHhcCccc
Q psy9395 128 LIIKT-NKILGVVTK-------IG-IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSH 194 (637)
Q Consensus 128 i~~~~-~~v~gV~~~-------~g-~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~~~~~l~~~l~~~G~~~ 194 (637)
+..++ +++.||.+. ++ ..+.|+.||+|||++..- + .....+.+.+|++ +.++. +.|..+
T Consensus 170 Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~--~-~~~~~~~~~tGdG--~~mA~---~aGa~l 237 (541)
T PRK07804 170 LLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL--Y-AATTNPAGSTGDG--VALAL---RAGAAV 237 (541)
T ss_pred eEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC--C-CCccCCCCcchHH--HHHHH---HcCCCC
Confidence 98765 688888764 22 478999999999997431 1 1123345566665 33433 455444
No 44
>PRK08275 putative oxidoreductase; Provisional
Probab=99.57 E-value=3.7e-13 Score=152.41 Aligned_cols=152 Identities=19% Similarity=0.211 Sum_probs=93.3
Q ss_pred cccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcccccCCCCcc---------chhhHHHH------------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQMSCNPSIGGI---------GKSHLVKE------------ 62 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~~cn~s~gg~---------~~~~l~~e------------ 62 (637)
.+||+|||||.||++||+.|++. |++|+|+||.....+...|. ..+|+ .....+..
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~-~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISM-GMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhh-hhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 48999999999999999999987 78999999974322221111 11111 11111111
Q ss_pred ----HHHhccHHHHHHhhcCCeEeeeccccC--chhhhh-hhc---cCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEe
Q psy9395 63 ----IDAMGGIMAIATDKSGIQFRILNSSKG--AAVRAT-RAQ---VDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIK 131 (637)
Q Consensus 63 ----l~~~gg~~~~~~~~~gi~~~~l~~~~g--p~~~~~-~~~---~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~ 131 (637)
+-.-......|++..|++|........ +..... ... .....+...|.+.+++ .+++++ ++.|++|..+
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~v~~Li~~ 166 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKR-ARVLITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHH-CCCEEEcceEEEEEEEc
Confidence 111112234667778998864321100 000000 000 1123566777777776 788885 8899999876
Q ss_pred -CCeEEEEEEe---cce--EEEeceEEEeccccc
Q psy9395 132 -TNKILGVVTK---IGI--KFFSKTVILTTGTFL 159 (637)
Q Consensus 132 -~~~v~gV~~~---~g~--~i~a~~VIlAtG~~~ 159 (637)
++++.||... +|. .+.|+.||+|||++.
T Consensus 167 ~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 167 ADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred CCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 6788888752 453 689999999999973
No 45
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.57 E-value=2.9e-13 Score=152.63 Aligned_cols=168 Identities=20% Similarity=0.201 Sum_probs=100.7
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hhhHHHHHHH-----------
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KSHLVKEIDA----------- 65 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~~l~~el~~----------- 65 (637)
.++||+|||+|.||++||+.|++. .+|+|+||.....| .+..+.|++. ....++.+-.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g--~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 83 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG--STFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAV 83 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC--ChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHH
Confidence 358999999999999999999986 89999999743222 2222333321 1111111111
Q ss_pred -----hccHHHHHHhhcCCeEeeeccccC-ch--------hhhhhh----ccCHHHHHHHHHHHHHhcCCeEEE-cceeE
Q psy9395 66 -----MGGIMAIATDKSGIQFRILNSSKG-AA--------VRATRA----QVDRILYKQAIRFYLENQLNLYLF-QEEVD 126 (637)
Q Consensus 66 -----~gg~~~~~~~~~gi~~~~l~~~~g-p~--------~~~~~~----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~ 126 (637)
-......|.+..|+.|.......+ +. ....+. ......+...|.+.+.+.++++++ ++.|+
T Consensus 84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~ 163 (536)
T PRK09077 84 RFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAI 163 (536)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEee
Confidence 111234567778888854221000 00 000111 011235667777777766799995 88899
Q ss_pred EEEEeC------CeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 127 DLIIKT------NKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 127 ~i~~~~------~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
++..++ +++.||... +| ..+.|+.||+|||++.+-.. ....+.+.+|++
T Consensus 164 ~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~---~~~~~~~~tGdG 223 (536)
T PRK09077 164 DLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL---YTTNPDIASGDG 223 (536)
T ss_pred eeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC---CCcCCCCCCcHH
Confidence 998654 789998764 34 36899999999999843211 122344556766
No 46
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.57 E-value=7.7e-14 Score=158.72 Aligned_cols=169 Identities=21% Similarity=0.139 Sum_probs=100.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-----------hhhHHHH-------------
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-----------KSHLVKE------------- 62 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-----------~~~l~~e------------- 62 (637)
+||+|||||.||++||+.|++.|++|+|||+.... .+.+..+.||++ ...+...
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~--~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 81 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK--RSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPP 81 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC--CCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence 69999999999999999999999999999997432 222333333321 1111111
Q ss_pred ---HHHhccHHHHHHhhcCCeEeeecc-------ccCchhhhhhh--ccCHHHHHHHHHHHHHhcC---CeEEE-cceeE
Q psy9395 63 ---IDAMGGIMAIATDKSGIQFRILNS-------SKGAAVRATRA--QVDRILYKQAIRFYLENQL---NLYLF-QEEVD 126 (637)
Q Consensus 63 ---l~~~gg~~~~~~~~~gi~~~~l~~-------~~gp~~~~~~~--~~d~~~~~~~l~~~l~~~~---gv~i~-~~~V~ 126 (637)
+-.-......|.+..|+.|..... ..+...+.... ......+...|.+.+.+.+ +++++ ++.++
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~ 161 (589)
T PRK08641 82 VKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFL 161 (589)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEE
Confidence 111111234667778888743210 11111100000 1123456667776665432 37775 78999
Q ss_pred EEEEe-CCeEEEEEEec---c--eEEEeceEEEecccccCCceeecccccCCCCccccch
Q psy9395 127 DLIIK-TNKILGVVTKI---G--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFST 180 (637)
Q Consensus 127 ~i~~~-~~~v~gV~~~~---g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~~~ 180 (637)
++..+ +++|.||...+ + ..+.|+.||+|||++.. ++ .....+.+.+|++..
T Consensus 162 ~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~--~y-~~tt~~~~~tGdG~~ 218 (589)
T PRK08641 162 GAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI--IF-GKSTNSTINTGSAAS 218 (589)
T ss_pred EEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC--CC-CCCCCCCCCchHHHH
Confidence 99875 68899998753 3 36889999999999843 22 223445566777633
No 47
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.56 E-value=1.4e-13 Score=144.72 Aligned_cols=263 Identities=23% Similarity=0.320 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccCCceeecccccCCCCccccchH
Q psy9395 103 LYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTT 181 (637)
Q Consensus 103 ~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~~~~ 181 (637)
.+.+.+.+.+++ .|+++ ++++|.++..+++.+.+|.+.+|.++.||.||+|.|-. ...
T Consensus 174 ~vvkni~~~l~~-~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs--------------------g~d 232 (486)
T COG2509 174 KVVKNIREYLES-LGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS--------------------GRD 232 (486)
T ss_pred HHHHHHHHHHHh-cCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc--------------------hHH
Confidence 566778888888 56777 69999999999988889999999999999999999973 112
Q ss_pred HHHHHHHhcCccce--ecccCCC---Cccccccc-----ccchhhcccCCCCCCceeeecCCCcCCCc----------cc
Q psy9395 182 SLAKRLKELQLSHG--RLKTGTP---PRIDKRTI-----DFSKMEEQIGDFDPVPVFSVLGNINLHPK----------QL 241 (637)
Q Consensus 182 ~l~~~l~~~G~~~~--~~~~g~~---p~~~~~si-----~~~~~~~~~~d~~~~~~fs~~~~~~~~~~----------~~ 241 (637)
-+....+++|+.+. ++..|.- |...-+.+ +...+.....++.....||--+. |.... .-
T Consensus 233 w~~~l~~K~Gv~~~~~p~dIGVRvE~p~~vmd~~~~~~~~~k~~~~t~k~~~~VrtFCmcP~-G~VV~e~~e~g~~~vNG 311 (486)
T COG2509 233 WFEMLHKKLGVKMRAKPFDIGVRVEHPQSVMDPHTRLGAAPKFLYYTKKYGDGVRTFCMCPG-GEVVAENYEDGFVVVNG 311 (486)
T ss_pred HHHHHHHhcCcccccCCeeEEEEEecchHhhCccccccccceeEEEeccCCCeEEEEEECCC-CeEEeeeccCceEEEcc
Confidence 22223334454433 2222210 11000000 11111111111122233443221 11110 00
Q ss_pred cccccccccccccc-c-----ccccccccccccccc----ccCCCCcccHHHHhhccCCCcc------cccccccCCCCC
Q psy9395 242 SCFITHTNEKTHNI-I-----RSEFKNSPIFSGKIE----SIGPRYCPSIEDKVYRFPKKKS------HHIFLEPEGIVI 305 (637)
Q Consensus 242 sc~~t~t~~~~~~i-i-----~~~~~~~~~~~g~~~----~~G~r~~psie~~~~~f~~~~~------~~~~le~~gl~~ 305 (637)
-.+..+....+.+. + .++++...-|+-.+. ..|--. ++-..+-+|...++ ...+++|.--
T Consensus 312 ~S~~~r~s~NtNfAllV~i~~tep~~~~~ey~r~ia~lA~~lgGg~--~i~Q~~gDf~~gRrSt~~ri~~~~v~PTlk-- 387 (486)
T COG2509 312 HSYYARKSENTNFALLVTIEFTEPFEDGIEYGRSIARLATTLGGGK--AIIQRVGDFLKGRRSTWSRIGRVFVEPTLK-- 387 (486)
T ss_pred cchhcccccCcceEEEEeccccCCCCchHHHHHHHHHHHHHhcCCc--chHHHhhHHHcCCcChHHHhhccccccccc--
Confidence 11222222233322 1 122222111111110 111111 23333334433221 2233444322
Q ss_pred cceecCcccCCCCHHHHHHHHHhccCCcceEEeccc--------cccccceeC-ccccCccccccCCCCEEEEEeecCCC
Q psy9395 306 NEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPG--------YAIEYDYFN-PCNLKSSLETKQIHGLFFAGQINGTT 376 (637)
Q Consensus 306 ~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~v~~~G--------~~~e~~~v~-~~~l~~tlesk~v~gLf~aGei~G~~ 376 (637)
.+.|..++..||..+...|+..++.|++. -|| |++|-.|.. -..+++.|+++ ++|||.|||.+|.+
T Consensus 388 -~v~pgDls~~lP~~v~~~iiE~le~ldk~---ipG~as~dtlLygvE~k~ys~ri~~d~~~~t~-i~gLy~aGdGAG~a 462 (486)
T COG2509 388 -PVTPGDLSLALPDRVVEDLIEALENLDKV---IPGVASDDTLLYGVETKFYSVRIKVDEDLSTS-IKGLYPAGDGAGLA 462 (486)
T ss_pred -ccccCchhhhCCHHHHHHHHHHHHHhhcc---CCCcccccceeeeeeeeeeeeeEeecccceee-ecceEEcccccccc
Confidence 15688899999999998888877666553 234 445544444 34556666655 99999999999999
Q ss_pred -CHHHHHHHHHHHHHHHHHHh
Q psy9395 377 -GYEEAASQGLLAGLNAALFS 396 (637)
Q Consensus 377 -Gy~eA~a~G~~AG~naa~~~ 396 (637)
|...|+++|++||+.++++.
T Consensus 463 rgI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 463 RGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred chhHHHhhhhHHHHHHHHHHh
Confidence 89999999999999998864
No 48
>PLN02815 L-aspartate oxidase
Probab=99.56 E-value=1.5e-13 Score=155.82 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=101.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------hhhHHHHH--------------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------KSHLVKEI-------------- 63 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~~~l~~el-------------- 63 (637)
++||+|||+|.||++||+.|++.| +|+|+|+.....|. +..+.||+. ...++.++
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~--s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN--TNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc--HHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 489999999999999999999999 99999997432222 222333321 11122221
Q ss_pred --HHhccHHHHHHhhcCCeEeeecc-------ccCchhhhhhh----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEE
Q psy9395 64 --DAMGGIMAIATDKSGIQFRILNS-------SKGAAVRATRA----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLI 129 (637)
Q Consensus 64 --~~~gg~~~~~~~~~gi~~~~l~~-------~~gp~~~~~~~----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~ 129 (637)
-.-......|.+..|++|..... ..+.. ..+. ......+...|.+.+.+.++++++ ++.+++|.
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s--~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li 183 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHS--HHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLL 183 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCc--cCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheee
Confidence 11112234677778998864221 01111 0111 112345667777777766789985 88999998
Q ss_pred Ee-CC---eEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 130 IK-TN---KILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 130 ~~-~~---~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
.+ ++ +|+||... +| ..+.|+.||+|||++.. ++ +....+.+.+|++
T Consensus 184 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~--~~-~~ttn~~~~tGDG 238 (594)
T PLN02815 184 TSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH--IY-PSTTNPLVATGDG 238 (594)
T ss_pred eecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee--eC-CCCCCCCCcccHH
Confidence 75 33 38888763 34 36789999999999832 22 2233445667776
No 49
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.54 E-value=2.5e-13 Score=154.70 Aligned_cols=166 Identities=23% Similarity=0.212 Sum_probs=97.0
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCcc-----------chhhHH----------------H
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGI-----------GKSHLV----------------K 61 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~-----------~~~~l~----------------~ 61 (637)
|+|||||.||++||+.|++.|++|+|+||... .+.+.+..+.||+ ....++ +
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~-~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 79 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA-PRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVK 79 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC-CCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 79999999999999999999999999999741 2222222222221 111111 1
Q ss_pred HHHHhccHHHHHHhhcCCeEeeecc-----ccCchhhhhhhc--c--CHHHHHHHHHHHHHh---cCCeEEE-cceeEEE
Q psy9395 62 EIDAMGGIMAIATDKSGIQFRILNS-----SKGAAVRATRAQ--V--DRILYKQAIRFYLEN---QLNLYLF-QEEVDDL 128 (637)
Q Consensus 62 el~~~gg~~~~~~~~~gi~~~~l~~-----~~gp~~~~~~~~--~--d~~~~~~~l~~~l~~---~~gv~i~-~~~V~~i 128 (637)
.+..-......|++..|+.|..... ..++.....|.. . ....+...|.+.+++ .++++++ ++.|++|
T Consensus 80 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~L 159 (603)
T TIGR01811 80 RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDI 159 (603)
T ss_pred HHHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEE
Confidence 1111122234677888998864321 011111011110 0 122344444444432 2579985 8999999
Q ss_pred EEeC-CeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCcccc
Q psy9395 129 IIKT-NKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 178 (637)
Q Consensus 129 ~~~~-~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~ 178 (637)
..++ ++|+||... +| ..+.|+.||+|||++.+- + .....+.+.+|++
T Consensus 160 i~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~--~-~~~t~~~~~tGdG 212 (603)
T TIGR01811 160 IVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV--F-GKSTNAMNSNASA 212 (603)
T ss_pred EEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc--C-CccCCCCCcCcHH
Confidence 8754 589998864 34 468999999999998432 2 1123445667776
No 50
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.52 E-value=2.2e-12 Score=146.40 Aligned_cols=147 Identities=23% Similarity=0.293 Sum_probs=87.6
Q ss_pred cEEEECcchHHHHHHHHHh----hCCCcEEEEccCCCCCCcccccCCCC--ccc-----------hhhHHHHHHH-----
Q psy9395 8 DVIVVGGGHAGTEAALVSA----RMGQKTLLLSHNIDTIGQMSCNPSIG--GIG-----------KSHLVKEIDA----- 65 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA----~~G~~V~LiE~~~~~~G~~~cn~s~g--g~~-----------~~~l~~el~~----- 65 (637)
||+|||||.||++||+.|+ +.|.+|+|+||... +...| .+.| +++ ....++....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~--~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl 77 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL--ERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGL 77 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC--CCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCC
Confidence 8999999999999999998 67999999999632 22222 2222 111 1112211111
Q ss_pred -----------hccHHHHHHhhcCCeEeeeccccCchhhhh--hhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEe
Q psy9395 66 -----------MGGIMAIATDKSGIQFRILNSSKGAAVRAT--RAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIK 131 (637)
Q Consensus 66 -----------~gg~~~~~~~~~gi~~~~l~~~~gp~~~~~--~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~ 131 (637)
-......|....|+.|.... ..|...... ...+....+...+...+.+ .+++++ ++.|+++..+
T Consensus 78 ~d~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~-~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~-~~~~i~~~~~v~~Ll~d 155 (614)
T TIGR02061 78 VREDLIFDMARHVDDSVHLFEEWGLPLWIKP-EDGKYVREGRWQIMIHGESYKPIVAEAAKN-ALGDIFERIFIVKLLLD 155 (614)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCceecC-CCCccccCCCcccCcCchhHHHHHHHHHHh-CCCeEEcccEEEEEEec
Confidence 11122356677899886421 011111000 0001223344444444554 456775 7899999876
Q ss_pred C---CeEEEEEEe---cc--eEEEeceEEEeccccc
Q psy9395 132 T---NKILGVVTK---IG--IKFFSKTVILTTGTFL 159 (637)
Q Consensus 132 ~---~~v~gV~~~---~g--~~i~a~~VIlAtG~~~ 159 (637)
+ |+|+||... +| ..+.|+.||+|||+|.
T Consensus 156 ~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 156 KNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred CCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4 689998753 34 3689999999999983
No 51
>KOG2820|consensus
Probab=99.50 E-value=1e-13 Score=140.06 Aligned_cols=157 Identities=22% Similarity=0.289 Sum_probs=96.0
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchh------------------hHHHHHH
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKS------------------HLVKEID 64 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~------------------~l~~el~ 64 (637)
|.+..||||||+|..|++||++||++|.+++|+|+.+...-. .|.+|..+- ..|+++.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~----GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~ 79 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSR----GSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLP 79 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCccc----CcccCcceeechhhhhHHHHHHHHHHHHHHHhCh
Confidence 345589999999999999999999999999999997433222 334443220 1111111
Q ss_pred HhccH---------------------HHHHHhhcCCeEeeec----cccCch-----------hhhhhhccCHHHHHHHH
Q psy9395 65 AMGGI---------------------MAIATDKSGIQFRILN----SSKGAA-----------VRATRAQVDRILYKQAI 108 (637)
Q Consensus 65 ~~gg~---------------------~~~~~~~~gi~~~~l~----~~~gp~-----------~~~~~~~~d~~~~~~~l 108 (637)
...+. ........++..+.+. +.++|. +......++......++
T Consensus 80 ~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~ 159 (399)
T KOG2820|consen 80 EESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKAL 159 (399)
T ss_pred hhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHH
Confidence 11000 0011111222222221 123341 00111234456778889
Q ss_pred HHHHHhcCCeEE-EcceeEEEEE--eCCeEEEEEEecceEEEeceEEEecccccCCcee
Q psy9395 109 RFYLENQLNLYL-FQEEVDDLII--KTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIH 164 (637)
Q Consensus 109 ~~~l~~~~gv~i-~~~~V~~i~~--~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~~~~ 164 (637)
+..++. .|+.+ .+..|+.+.. +++..++|.|.+|..|.|+++|+|+|+|++.++.
T Consensus 160 ~~~~~~-~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 160 QDKARE-LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHH-cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 999888 55555 4777776653 3455778999999899999999999999877653
No 52
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-12 Score=135.34 Aligned_cols=111 Identities=26% Similarity=0.422 Sum_probs=77.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCc-EEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQK-TLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
+|||+||||||||++||++++|.|++ ++|+|+. ...|... ...+++.+
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~------------~~~~veny------------------ 51 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLT------------KTTDVENY------------------ 51 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCccc------------cceeecCC------------------
Confidence 49999999999999999999999999 7777764 2222110 00011111
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
|. .........+.+.+.+.+.. .++++....|.++...++ .+.|.+.++. ++|+.||+|||..
T Consensus 52 -----pg---~~~~~~g~~L~~~~~~~a~~-~~~~~~~~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 52 -----PG---FPGGILGPELMEQMKEQAEK-FGVEIVEDEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred -----CC---CccCCchHHHHHHHHHHHhh-cCeEEEEEEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCc
Confidence 21 11122334566677777765 888887788888875544 6778888886 9999999999985
No 53
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.49 E-value=2.1e-12 Score=157.10 Aligned_cols=154 Identities=23% Similarity=0.352 Sum_probs=94.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch---------------hhHHHHH-------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK---------------SHLVKEI------- 63 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~---------------~~l~~el------- 63 (637)
.+||||||||.||++||+.|++.|++|+|+||.....|... .+.|++.. ..+.+..
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~--~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~ 486 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA--KATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGG 486 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh--hcccccccCCchhhhhhcccccHHHHHHHHHHhccCC
Confidence 48999999999999999999999999999999754333322 11222110 0111111
Q ss_pred ----------HHhccHHHHHHhhcCCeEeeeccccCchhhh-hh--hcc------CHHHHHHHHHHHHHhc--CCeEE-E
Q psy9395 64 ----------DAMGGIMAIATDKSGIQFRILNSSKGAAVRA-TR--AQV------DRILYKQAIRFYLENQ--LNLYL-F 121 (637)
Q Consensus 64 ----------~~~gg~~~~~~~~~gi~~~~l~~~~gp~~~~-~~--~~~------d~~~~~~~l~~~l~~~--~gv~i-~ 121 (637)
-.-.+....|....|+.|.......++.... .. ... ....+...+.+.+++. .++++ +
T Consensus 487 ~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~ 566 (1167)
T PTZ00306 487 HCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMT 566 (1167)
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEE
Confidence 0011223467777888876432111111000 00 000 0123555666666542 58898 4
Q ss_pred cceeEEEEEeC-----C----eEEEEEEe-----cc--eEEEeceEEEecccccCC
Q psy9395 122 QEEVDDLIIKT-----N----KILGVVTK-----IG--IKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 122 ~~~V~~i~~~~-----~----~v~gV~~~-----~g--~~i~a~~VIlAtG~~~~~ 161 (637)
++.+++|+.++ | +|+||... +| ..+.|+.||+|||+|.+.
T Consensus 567 ~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 567 ETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSND 622 (1167)
T ss_pred CCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccC
Confidence 99999998763 2 79998875 34 478999999999999664
No 54
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.48 E-value=1.1e-11 Score=140.45 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEe-cc--eEEEec-eEEEecccccCC
Q psy9395 103 LYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTK-IG--IKFFSK-TVILTTGTFLNG 161 (637)
Q Consensus 103 ~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~-~g--~~i~a~-~VIlAtG~~~~~ 161 (637)
.+...+.+.+++ .++++ .++.|++|..++++|+||... +| ..+.|+ .||+|||++...
T Consensus 209 ~l~~~l~~~~~~-~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 209 ALIGRMLEAALA-AGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHHHHHHHHh-CCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccCC
Confidence 345566677776 68888 499999999888999998774 34 357884 799999998653
No 55
>PRK14694 putative mercuric reductase; Provisional
Probab=99.47 E-value=1.2e-12 Score=145.56 Aligned_cols=146 Identities=15% Similarity=0.220 Sum_probs=79.4
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ 80 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~ 80 (637)
|+.+..|||+|||||+||+.||..|++.|++|+|+|++ ..+|. |-. .|.+....+.+...... .........|+.
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGt--c~n-~GciPsk~l~~~a~~~~-~~~~~~~~~g~~ 75 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGT--CVN-IGCVPSKIMIRAAHIAH-LRRESPFDDGLS 75 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccc--eec-CCccccHHHHHHHHHHH-HHhhccccCCcc
Confidence 66567799999999999999999999999999999985 33333 421 22222222222211110 000000011221
Q ss_pred EeeeccccCchhhhhhhccCHHHHHHH-----HHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc--eEEEeceEEE
Q psy9395 81 FRILNSSKGAAVRATRAQVDRILYKQA-----IRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG--IKFFSKTVIL 153 (637)
Q Consensus 81 ~~~l~~~~gp~~~~~~~~~d~~~~~~~-----l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIl 153 (637)
.. .|.+......-........ ....+....+++++..+|..+. .+. +.|.+.+| .++++|.+|+
T Consensus 76 ~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id--~~~-~~V~~~~g~~~~~~~d~lVi 146 (468)
T PRK14694 76 AQ------APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD--ERT-LTVTLNDGGEQTVHFDRAFI 146 (468)
T ss_pred cC------CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec--CCE-EEEEecCCCeEEEECCEEEE
Confidence 10 0100000000000011111 2233444468999888888774 333 44666665 4799999999
Q ss_pred ecccccC
Q psy9395 154 TTGTFLN 160 (637)
Q Consensus 154 AtG~~~~ 160 (637)
|||+.+.
T Consensus 147 ATGs~p~ 153 (468)
T PRK14694 147 GTGARPA 153 (468)
T ss_pred eCCCCCC
Confidence 9999643
No 56
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.46 E-value=5.7e-14 Score=153.10 Aligned_cols=143 Identities=21% Similarity=0.280 Sum_probs=76.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR 82 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~ 82 (637)
+||++|||||+||..||..||+.|++|+++|+....+|.+ .|-||. .++...+.+.. +.+.....|+...
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK------~Ll~~a~~~~~-~~~~~~~~Gi~~~ 76 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSK------ALLHAAEVIEE-ARHAAKEYGISAE 76 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccH------HHHHHHHHHHH-HhhcccccceecC
Confidence 4999999999999999999999999999999974233432 355543 23322211111 1111112444332
Q ss_pred eeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccCC
Q psy9395 83 ILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 83 ~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~ 161 (637)
.. ...++.+...+..+ -......+...++. .+++++.....=+ +++.+ .|...+.++++|+.+|||||+.+..
T Consensus 77 ~~-~id~~~~~~~k~~v-~~~~~~~~~~l~~~-~~V~vi~G~a~f~--~~~~v-~V~~~~~~~~~a~~iiIATGS~p~~ 149 (454)
T COG1249 77 VP-KIDFEKLLARKDKV-VRLLTGGVEGLLKK-NGVDVIRGEARFV--DPHTV-EVTGEDKETITADNIIIATGSRPRI 149 (454)
T ss_pred CC-CcCHHHHHHHHHHH-HHHHhhhHHHHHhh-CCCEEEEEEEEEC--CCCEE-EEcCCCceEEEeCEEEEcCCCCCcC
Confidence 11 00011111111110 01222333334444 6888876655432 13332 2322224799999999999996443
No 57
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.44 E-value=1.1e-11 Score=137.10 Aligned_cols=138 Identities=20% Similarity=0.236 Sum_probs=74.5
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeE
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQF 81 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~ 81 (637)
++|||+|||||+||++||..|++.|++|+|+|+. ..+|.+ .|.|+. .++...+... .+ +.....|+..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk------~l~~~a~~~~-~~-~~~~~~g~~~ 71 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKK------VMWYASDLAE-RM-HDAADYGFYQ 71 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccH------HHHHHHHHHH-HH-hHHhhcCccc
Confidence 3599999999999999999999999999999985 344432 355443 2222211111 01 1122233322
Q ss_pred eeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 82 RILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 82 ~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
.......++.+...+..+ ...+...+...+.+ .+++++..+... .++.. |.+ ++..+.+|.||+|||+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~gv~~~~g~~~~--~~~~~---v~v-~~~~~~~d~vIiAtGs~p 141 (450)
T TIGR01421 72 NLENTFNWPELKEKRDAY-VDRLNGIYQKNLEK-NKVDVIFGHARF--TKDGT---VEV-NGRDYTAPHILIATGGKP 141 (450)
T ss_pred CCcCccCHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCEEEEEEEEE--ccCCE---EEE-CCEEEEeCEEEEecCCCC
Confidence 100000111111111000 01223344455555 688886444432 23333 222 456799999999999864
No 58
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.44 E-value=1.6e-11 Score=133.49 Aligned_cols=145 Identities=24% Similarity=0.265 Sum_probs=91.9
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh-cCCeEeee
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK-SGIQFRIL 84 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~-~gi~~~~l 84 (637)
+|||+|||||+||++||+.||+.|++|+|+|+. ...|...|. ++....+.+.++...... ...+. .+..+...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~-~~~G~k~~~---~~~~~~~~l~~l~~~~~~--~i~~~v~~~~~~~~ 76 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKG-SEPGAKPCC---GGGLSPRALEELIPDFDE--EIERKVTGARIYFP 76 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecC-CCCCCCccc---cceechhhHHHhCCCcch--hhheeeeeeEEEec
Confidence 399999999999999999999999999999997 455554444 222111222222111110 00000 00000000
Q ss_pred ccccCc-hhh-hhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 85 NSSKGA-AVR-ATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 85 ~~~~gp-~~~-~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
..... ... .....+++..|.+.|.+.+++ .|++++ .++|+++..+++++..+...++.+++|+.||+|+|..
T Consensus 77 -~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~-aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 77 -GEKVAIEVPVGEGYIVDRAKFDKWLAERAEE-AGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred -CCceEEecCCCceEEEEhHHhhHHHHHHHHH-cCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 00000 000 224467888888888888887 678875 8999999988876665555555799999999999983
No 59
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.41 E-value=1.4e-11 Score=139.58 Aligned_cols=115 Identities=23% Similarity=0.361 Sum_probs=76.9
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEee
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRI 83 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~ 83 (637)
...|||+|||||+||++||..|++.|++|+|+|++ ...|.. .... .+.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~--~~~~----------~i~------------------- 49 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQI--TITS----------EVV------------------- 49 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceE--Eecc----------ccc-------------------
Confidence 44599999999999999999999999999999985 332221 1000 000
Q ss_pred eccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccCC
Q psy9395 84 LNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 84 l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~ 161 (637)
..|.. .......+...+.+.++. .++.+++++|+++..++. .+.|.+.++ .+.++.||+|||++.+.
T Consensus 50 ----~~pg~----~~~~~~~l~~~l~~~~~~-~gv~~~~~~V~~i~~~~~-~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 50 ----NYPGI----LNTTGPELMQEMRQQAQD-FGVKFLQAEVLDVDFDGD-IKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred ----cCCCC----cCCCHHHHHHHHHHHHHH-cCCEEeccEEEEEEecCC-EEEEEecCC-EEEEeEEEECCCCccCC
Confidence 00110 012223455666666665 578888888988876543 445666555 68999999999997543
No 60
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.40 E-value=8.4e-12 Score=137.92 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=76.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR 82 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~ 82 (637)
+|||+|||||+||++||+.|+++|++|+|+|+. ..+|.+ .|.|+. .++....... .+ +-....|+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk------~l~~~a~~~~-~~-~~~~~~g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKK------LMVYGSTFGG-EF-EDAAGYGWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchH------HHHHHHHHHH-HH-hhhHhcCcCCC
Confidence 499999999999999999999999999999984 333332 244432 2222111110 01 11122233210
Q ss_pred eeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 83 ILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 83 ~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
.. ...++.+...... ....+...+++.+++ .+++++..++..+. ...+ .+ ..+|..+.+|+||+|||+.+
T Consensus 73 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~gV~~~~g~~~~v~--~~~v-~v-~~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 73 KA-RFDWKKLLQKKDD-EIARLSGLYKRLLAN-AGVELLEGRARLVG--PNTV-EV-LQDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred CC-CcCHHHHHHHHHH-HHHHHHHHHHHHHHh-CCcEEEEEEEEEec--CCEE-EE-ecCCeEEEcCEEEEecCCcC
Confidence 00 0000111000000 001234455556665 78999877776663 2222 23 23567899999999999864
No 61
>PRK06116 glutathione reductase; Validated
Probab=99.40 E-value=1.4e-11 Score=136.36 Aligned_cols=138 Identities=20% Similarity=0.207 Sum_probs=74.6
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeE
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQF 81 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~ 81 (637)
.+|||+|||||+||++||..|++.|++|+|+|+. ..+|.+ .|-|+. .++.. ..+...+..+....|+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k------~l~~~-~~~~~~~~~~~~~~g~~~ 74 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKK------LMWYG-AQIAEAFHDYAPGYGFDV 74 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHH------HHHHH-HHHHHHHHhHHHhcCCCC
Confidence 3499999999999999999999999999999985 333331 233322 11111 111111111122233321
Q ss_pred eeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 82 RILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 82 ~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
... ...++.+...... ....+...+.+.+.+ .+++++..+++.+. ... |.+ +|..+.+|.||+|||+.+
T Consensus 75 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~gv~~~~g~~~~v~--~~~---v~~-~g~~~~~d~lViATGs~p 143 (450)
T PRK06116 75 TEN-KFDWAKLIANRDA-YIDRLHGSYRNGLEN-NGVDLIEGFARFVD--AHT---VEV-NGERYTADHILIATGGRP 143 (450)
T ss_pred CCC-CcCHHHHHHHHHH-HHHHHHHHHHHHHHh-CCCEEEEEEEEEcc--CCE---EEE-CCEEEEeCEEEEecCCCC
Confidence 100 0000111000000 001223334444554 68999877776552 332 344 667899999999999864
No 62
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.40 E-value=2.5e-11 Score=126.40 Aligned_cols=112 Identities=25% Similarity=0.340 Sum_probs=76.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
|||+|||||+||++||..|++.|++|+|+|++. ..|... .. ..+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~--~~----------~~~~~--------------------- 46 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT--TT----------TEVEN--------------------- 46 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee--ec----------ccccc---------------------
Confidence 799999999999999999999999999999862 222110 00 00000
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
.|.. ...+....+...+.+.+++ .+++++.++|+++..+++. +.|.+.++..+++|.+|+|||...
T Consensus 47 --~~~~---~~~~~~~~~~~~l~~~~~~-~gv~~~~~~v~~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 47 --YPGF---PEGISGPELMEKMKEQAVK-FGAEIIYEEVIKVDLSDRP-FKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred --cCCC---CCCCChHHHHHHHHHHHHH-cCCeEEEEEEEEEEecCCe-eEEEeCCCCEEEeCEEEECCCCCc
Confidence 0110 0012223456666777776 5788855889998765543 446677777899999999999864
No 63
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.37 E-value=4.4e-11 Score=132.83 Aligned_cols=146 Identities=19% Similarity=0.238 Sum_probs=75.5
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHH-HHHHhhcCC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIM-AIATDKSGI 79 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~-~~~~~~~gi 79 (637)
|.| .+|||+|||||+||++||+.|++.|++|+|+|++...+|. |... |.+....+......+...- .......+.
T Consensus 1 ~~~-~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~--~~~~-gcipsk~l~~~~~~~~~~~~~~~~~~~~~ 76 (461)
T PRK05249 1 MHM-YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG--CTHT-GTIPSKALREAVLRLIGFNQNPLYSSYRV 76 (461)
T ss_pred CCC-ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc--cccc-CCCCHHHHHHHHHHHHHHhhhhhhcccCC
Confidence 555 3599999999999999999999999999999986333333 3221 2221112222111111000 000000000
Q ss_pred eEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecce--EEEeceEEEeccc
Q psy9395 80 QFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGI--KFFSKTVILTTGT 157 (637)
Q Consensus 80 ~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~--~i~a~~VIlAtG~ 157 (637)
. ....++.+......+ ...+...+.+.+.+ .+++++..++..+ +.+. +.|...+|. .+++|.||+|||+
T Consensus 77 ~----~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~v~~~~g~~~~~--~~~~-~~v~~~~g~~~~~~~d~lviATGs 147 (461)
T PRK05249 77 K----LRITFADLLARADHV-INKQVEVRRGQYER-NRVDLIQGRARFV--DPHT-VEVECPDGEVETLTADKIVIATGS 147 (461)
T ss_pred c----CccCHHHHHHHHHHH-HHHHHHHHHHHHHH-CCCEEEEEEEEEe--cCCE-EEEEeCCCceEEEEcCEEEEcCCC
Confidence 0 000001100000000 01122334444554 6888876666544 2333 335555553 7999999999998
Q ss_pred cc
Q psy9395 158 FL 159 (637)
Q Consensus 158 ~~ 159 (637)
.+
T Consensus 148 ~p 149 (461)
T PRK05249 148 RP 149 (461)
T ss_pred CC
Confidence 54
No 64
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.37 E-value=1.5e-11 Score=136.64 Aligned_cols=144 Identities=22% Similarity=0.214 Sum_probs=75.1
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
.+|||+|||||+||+.||..|++.|++|+|+|+....+|. |. ..|.+....++.....+.. .+.....|+.+...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~--c~-n~gciP~K~l~~~a~~~~~--~~~~~~~g~~~~~~ 77 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV--CL-NVGCIPSKALLHVAKVIEE--AKALAEHGIVFGEP 77 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc--cc-CCCcccHHHHHHHHHHHHH--HhhhhhcCcccCCC
Confidence 3499999999999999999999999999999986333333 31 1122211122211111110 01122334432110
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc--eEEEeceEEEeccccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTFL 159 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~~ 159 (637)
. ...+.+....... ...+...+...+++ .+++++...+..+ +... +.|...+| .++.+|.||+|||+.+
T Consensus 78 ~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~gV~~~~g~a~~~--~~~~-v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 78 K-IDIDKMRARKEKV-VKQLTGGLAGMAKG-RKVTVVNGLGKFT--GGNT-LEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred C-cCHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCEEEEEEEEEc--cCCE-EEEecCCCceEEEEcCEEEEeCCCCC
Confidence 0 0001110000000 00112223334444 7899987666543 3333 33555555 4799999999999964
No 65
>PRK13748 putative mercuric reductase; Provisional
Probab=99.37 E-value=2.3e-11 Score=138.52 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=33.9
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~ 44 (637)
.|||+|||||+||+.||..|++.|++|+|||++ ..+|.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~ 135 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGT 135 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceee
Confidence 599999999999999999999999999999986 33443
No 66
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.36 E-value=5.8e-11 Score=131.14 Aligned_cols=128 Identities=20% Similarity=0.325 Sum_probs=71.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
.|||+|||||+||++||+.|++.|++|+|+|+.....|. .|.. .|.+....+..... ....+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG-~~~~-~gcip~k~l~~~~~------------~~~~~---- 64 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGG-TCIN-IGCIPTKTLVHDAQ------------QHTDF---- 64 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccce-eEee-ccccchHHHHHHhc------------cCCCH----
Confidence 499999999999999999999999999999986333332 2311 12211111211110 00000
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecce-EEEeceEEEeccccc
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGI-KFFSKTVILTTGTFL 159 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~-~i~a~~VIlAtG~~~ 159 (637)
+........+ ...+.....+.+.+..+++++..++..+. .+. +.|.+.+|. .+.+|.+|+|||+..
T Consensus 65 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~-~~v~~~~g~~~~~~d~lviATGs~p 131 (441)
T PRK08010 65 ----VRAIQRKNEV-VNFLRNKNFHNLADMPNIDVIDGQAEFIN--NHS-LRVHRPEGNLEIHGEKIFINTGAQT 131 (441)
T ss_pred ----HHHHHHHHHH-HHHHHHhHHHHHhhcCCcEEEEEEEEEec--CCE-EEEEeCCCeEEEEeCEEEEcCCCcC
Confidence 0000000000 00111112233444468998877776653 333 345566664 799999999999854
No 67
>PRK06370 mercuric reductase; Validated
Probab=99.35 E-value=1.3e-10 Score=129.13 Aligned_cols=145 Identities=22% Similarity=0.241 Sum_probs=74.5
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ 80 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~ 80 (637)
|+| .+|||+|||||+||++||..|++.|++|+|+|+. ..+|. |-. .|.+....++....... ..+.....|+.
T Consensus 1 ~~~-~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~--c~~-~gciPsk~l~~~a~~~~--~~~~~~~~g~~ 73 (463)
T PRK06370 1 TPA-QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGT--CVN-TGCVPTKTLIASARAAH--LARRAAEYGVS 73 (463)
T ss_pred CCC-ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCc--eec-cccCcHHHHHHHHHHHH--HHHHHHhcCcc
Confidence 444 3599999999999999999999999999999985 33333 211 22222222222211111 01112233442
Q ss_pred EeeeccccCchhhhh-hhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 81 FRILNSSKGAAVRAT-RAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 81 ~~~l~~~~gp~~~~~-~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
........++.+... +..++ .+...+...+++..+++++..+... .+... |.+ ++..+.+|.||+|||+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gv~v~~g~~~~--~~~~~---v~v-~~~~~~~d~lViATGs~p 145 (463)
T PRK06370 74 VGGPVSVDFKAVMARKRRIRA--RSRHGSEQWLRGLEGVDVFRGHARF--ESPNT---VRV-GGETLRAKRIFINTGARA 145 (463)
T ss_pred cCccCccCHHHHHHHHHHHHH--HHHHhHHHHHhcCCCcEEEEEEEEE--ccCCE---EEE-CcEEEEeCEEEEcCCCCC
Confidence 100000000111000 00111 1223344555553488886444332 22333 222 456799999999999964
Q ss_pred C
Q psy9395 160 N 160 (637)
Q Consensus 160 ~ 160 (637)
.
T Consensus 146 ~ 146 (463)
T PRK06370 146 A 146 (463)
T ss_pred C
Confidence 3
No 68
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.35 E-value=8.3e-11 Score=131.04 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=76.4
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC-----CCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI-----DTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGI 79 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~-----~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi 79 (637)
.+|||+|||||+||+.||+.|++.|++|+|+|+.. ...|. .|. ..+++....+....+.+. .+.+.....|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg-~c~-n~gc~P~k~l~~~a~~~~-~~~~~~~~~G~ 79 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGG-TCL-NVGCIPSKALLASSEEFE-NAGHHFADHGI 79 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCC-ccc-cccccHHHHHHHHHHHHH-HHHhhHHhcCc
Confidence 35999999999999999999999999999999821 12222 232 122221111222111111 11122233444
Q ss_pred eEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEe--cceEEEeceEEEeccc
Q psy9395 80 QFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTK--IGIKFFSKTVILTTGT 157 (637)
Q Consensus 80 ~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~--~g~~i~a~~VIlAtG~ 157 (637)
..... ...++.+......+ ...+...+.+.++. .+++++..++..+..+++. ..|.+. ++.++++|+||+|||+
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~-~~v~v~~~~~~~~~~d~lViATGs 155 (475)
T PRK06327 80 HVDGV-KIDVAKMIARKDKV-VKKMTGGIEGLFKK-NKITVLKGRGSFVGKTDAG-YEIKVTGEDETVITAKHVIIATGS 155 (475)
T ss_pred cCCCC-ccCHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCEEEEEEEEEecCCCCC-CEEEEecCCCeEEEeCEEEEeCCC
Confidence 32110 00011111000000 01122333444443 7899987777665432221 223332 3468999999999999
Q ss_pred ccC
Q psy9395 158 FLN 160 (637)
Q Consensus 158 ~~~ 160 (637)
...
T Consensus 156 ~p~ 158 (475)
T PRK06327 156 EPR 158 (475)
T ss_pred CCC
Confidence 643
No 69
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.34 E-value=1.6e-11 Score=125.33 Aligned_cols=135 Identities=23% Similarity=0.318 Sum_probs=93.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
+|||+|||||+||+.||+.|++.|++|+|+|++....|... .++.....+. .......+.+..++.+....
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~----~gg~~~~~~~-----v~~~~~~~l~~~gv~~~~~~ 95 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW----GGGMLFNKIV-----VQEEADEILDEFGIRYKEVE 95 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc----cCcccccccc-----chHHHHHHHHHCCCCceeec
Confidence 48999999999999999999999999999999754333221 1111100000 01123455667777665431
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCC-eEEEEEEec-----------ceEEEeceEE
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTN-KILGVVTKI-----------GIKFFSKTVI 152 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~-~v~gV~~~~-----------g~~i~a~~VI 152 (637)
. . ...+++..+...+.+.+.+ .|++++ ++.|.++..+++ ++.|+.+.. ...++|+.||
T Consensus 96 ~----g----~~~vd~~~l~~~L~~~A~~-~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 96 D----G----LYVADSVEAAAKLAAAAID-AGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred C----c----ceeccHHHHHHHHHHHHHH-cCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 1 1 1245677788888888877 688886 789999987665 788877532 2579999999
Q ss_pred Eecccc
Q psy9395 153 LTTGTF 158 (637)
Q Consensus 153 lAtG~~ 158 (637)
+|||.+
T Consensus 167 ~ATG~~ 172 (257)
T PRK04176 167 DATGHD 172 (257)
T ss_pred EEeCCC
Confidence 999985
No 70
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.33 E-value=8.2e-11 Score=130.72 Aligned_cols=139 Identities=22% Similarity=0.309 Sum_probs=74.4
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc---ccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ---MSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ 80 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~---~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~ 80 (637)
+..|||+|||||+||++||..|++.|++|+|+|+.. .+|. ..|-|+..-.......+.+. .....|+.
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~--------~~~~~g~~ 72 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEAR--------HSEDFGIK 72 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHH--------HHHhcCcc
Confidence 346999999999999999999999999999999863 3333 23444331111111111110 11222321
Q ss_pred EeeeccccCchhhhhhhccCH--HHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEec-ceEEEeceEEEeccc
Q psy9395 81 FRILNSSKGAAVRATRAQVDR--ILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKI-GIKFFSKTVILTTGT 157 (637)
Q Consensus 81 ~~~l~~~~gp~~~~~~~~~d~--~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~-g~~i~a~~VIlAtG~ 157 (637)
.... ...+.......+. ..+...+...+++ .+++++..+++.+ +... +.|...+ +..+.+|.||+|||+
T Consensus 73 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~--~~~~-~~v~~~~~~~~~~~d~lViAtGs 144 (462)
T PRK06416 73 AENV----GIDFKKVQEWKNGVVNRLTGGVEGLLKK-NKVDIIRGEAKLV--DPNT-VRVMTEDGEQTYTAKNIILATGS 144 (462)
T ss_pred cCCC----ccCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEEEEEEc--cCCE-EEEecCCCcEEEEeCEEEEeCCC
Confidence 1000 0000000000000 1122234444554 6899887666654 2333 2344323 368999999999999
Q ss_pred cc
Q psy9395 158 FL 159 (637)
Q Consensus 158 ~~ 159 (637)
.+
T Consensus 145 ~p 146 (462)
T PRK06416 145 RP 146 (462)
T ss_pred CC
Confidence 64
No 71
>PLN02507 glutathione reductase
Probab=99.32 E-value=1.1e-10 Score=130.64 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=76.6
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC--------CCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI--------DTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKS 77 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~--------~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~ 77 (637)
+|||+|||||++|+.||..|++.|++|+|+|++. ..+|. .|-. .|.+....++..... ...+ +.....
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GG-tc~n-~GciPsK~l~~~a~~-~~~~-~~~~~~ 100 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGG-TCVI-RGCVPKKILVYGATF-GGEF-EDAKNY 100 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccc-eeec-cCchhHHHHHHHHHH-HHHH-HHHHhc
Confidence 4999999999999999999999999999999621 12222 2311 122211122221111 1111 122334
Q ss_pred CCeEeeeccccCchhh-hhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecce--EEEeceEEEe
Q psy9395 78 GIQFRILNSSKGAAVR-ATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGI--KFFSKTVILT 154 (637)
Q Consensus 78 gi~~~~l~~~~gp~~~-~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~--~i~a~~VIlA 154 (637)
|+.........+..+. ....+++ .+...+...+.+ .+++++..++..+. ... +.|.+.+|. .+.+|.+|+|
T Consensus 101 G~~~~~~~~id~~~~~~~~~~~~~--~~~~~~~~~l~~-~gV~~i~g~a~~vd--~~~-v~V~~~~g~~~~~~~d~LIIA 174 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKTDEIL--RLNGIYKRLLAN-AGVKLYEGEGKIVG--PNE-VEVTQLDGTKLRYTAKHILIA 174 (499)
T ss_pred CcccCCCCccCHHHHHHHHHHHHH--HHHHHHHHHHHh-CCcEEEEEEEEEec--CCE-EEEEeCCCcEEEEEcCEEEEe
Confidence 4432100000001100 0001111 123334444444 78999888877663 333 346566664 6899999999
Q ss_pred ccccc
Q psy9395 155 TGTFL 159 (637)
Q Consensus 155 tG~~~ 159 (637)
||+.+
T Consensus 175 TGs~p 179 (499)
T PLN02507 175 TGSRA 179 (499)
T ss_pred cCCCC
Confidence 99853
No 72
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.30 E-value=1.7e-10 Score=128.24 Aligned_cols=141 Identities=18% Similarity=0.275 Sum_probs=73.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR 82 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~ 82 (637)
+|||+|||||+||++||..|++.|++|+|+|+....+|.+ .|.|+.. ++...+.+...........|+...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~------l~~~~~~~~~~~~~~~~~~gi~~~ 76 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKA------LLHASELYEAASGGEFAHLGIEVK 76 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHH------HHHHhHHHHHHhhhhhhhcCcccc
Confidence 3999999999999999999999999999999743334432 3444432 222211111000001122344221
Q ss_pred eeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc--eEEEeceEEEeccccc
Q psy9395 83 ILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTFL 159 (637)
Q Consensus 83 ~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~~ 159 (637)
. ......+....... ...+...+...+++ .+++++..+. .+. ++.++ .|.+.+| ..+.+|.||||||+.+
T Consensus 77 ~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~~~~g~a-~~~-~~~~v-~v~~~~g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 77 P--TLNLAQMMKQKDES-VEALTKGVEFLFRK-NKVDWIKGWG-RLD-GVGKV-VVKAEDGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred C--ccCHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCEEEEEEE-EEc-cCCEE-EEEcCCCceEEEEeCEEEEeCCCCC
Confidence 0 00001100000000 01122333333443 6788875553 332 23333 3444555 3799999999999864
No 73
>PRK10262 thioredoxin reductase; Provisional
Probab=99.30 E-value=1.5e-10 Score=122.37 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ 80 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~ 80 (637)
|.....+||+|||||+||++||..|+++|++|+++|+. ...|.. ..+.. ..++
T Consensus 1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~--~~~~~-----------------------~~~~- 53 (321)
T PRK10262 1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQL--TTTTE-----------------------VENW- 53 (321)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCce--ecCce-----------------------ECCC-
Confidence 55456799999999999999999999999999999964 332221 11000 0000
Q ss_pred EeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 81 FRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 81 ~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
|. ....++...+.+.+.+.+.. .++.+...+|+.+...++. +.+.... ..+.+|.||+|||+..+
T Consensus 54 ---------~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~-~~v~~~~-~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 54 ---------PG---DPNDLTGPLLMERMHEHATK-FETEIIFDHINKVDLQNRP-FRLTGDS-GEYTCDALIIATGASAR 118 (321)
T ss_pred ---------CC---CCCCCCHHHHHHHHHHHHHH-CCCEEEeeEEEEEEecCCe-EEEEecC-CEEEECEEEECCCCCCC
Confidence 11 01123334556666666655 3456655567777665554 3344333 37899999999999744
No 74
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.30 E-value=2e-11 Score=134.18 Aligned_cols=148 Identities=28% Similarity=0.351 Sum_probs=89.8
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHH-----HHHh
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMA-----IATD 75 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~-----~~~~ 75 (637)
|+. .+|||||||||+||++||+.||+.|++|+|||+.. ..+...| .||....+..+++ +..+.. ....
T Consensus 1 m~~-~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~-~~g~k~~---~gg~l~~~~~e~l--~~~~~~~~~~~~~~~ 73 (428)
T PRK10157 1 MSE-DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGN-SAGAKNV---TGGRLYAHSLEHI--IPGFADSAPVERLIT 73 (428)
T ss_pred CCc-ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC-CCCCccc---ccceechhhHHHH--hhhhhhcCcccceee
Confidence 542 45999999999999999999999999999999974 3333222 1222111111111 111000 0000
Q ss_pred hcCCeE---------eeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceE
Q psy9395 76 KSGIQF---------RILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIK 145 (637)
Q Consensus 76 ~~gi~~---------~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~ 145 (637)
...+.+ ...+... .........+.+..+.+.+.+.+++ .|++++ +++|+++..+++++.++. .+|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~R~~fD~~L~~~a~~-~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~ 150 (428)
T PRK10157 74 HEKLAFMTEKSAMTMDYCNGDE-TSPSQRSYSVLRSKFDAWLMEQAEE-AGAQLITGIRVDNLVQRDGKVVGVE-ADGDV 150 (428)
T ss_pred eeeEEEEcCCCceeeccccccc-cCCCCCceeeEHHHHHHHHHHHHHH-CCCEEECCCEEEEEEEeCCEEEEEE-cCCcE
Confidence 000011 0000000 0001123356778888888888877 688886 789999987777776655 35668
Q ss_pred EEeceEEEecccc
Q psy9395 146 FFSKTVILTTGTF 158 (637)
Q Consensus 146 i~a~~VIlAtG~~ 158 (637)
+.|+.||+|+|..
T Consensus 151 i~A~~VI~A~G~~ 163 (428)
T PRK10157 151 IEAKTVILADGVN 163 (428)
T ss_pred EECCEEEEEeCCC
Confidence 9999999999984
No 75
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.29 E-value=1.3e-10 Score=129.26 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=34.3
Q ss_pred ccCccccccCCCCEEEEEeecCCCCHH-HHHHHHHHHHHHHH
Q psy9395 353 NLKSSLETKQIHGLFFAGQINGTTGYE-EAASQGLLAGLNAA 393 (637)
Q Consensus 353 ~l~~tlesk~v~gLf~aGei~G~~Gy~-eA~a~G~~AG~naa 393 (637)
.+|+.|+|. +||+|++||++|...+. .|..||.+|+.|++
T Consensus 309 ~Vd~~l~Ts-~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 309 QVDEFSRTN-VPNIYAIGDVTDRVMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred ecCCCCcCC-CCCEEEeeecCCCcccHHHHHHHHHHHHHHHh
Confidence 456778875 99999999999877666 89999999999986
No 76
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.29 E-value=4.8e-11 Score=134.12 Aligned_cols=112 Identities=25% Similarity=0.375 Sum_probs=76.4
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
..|||+|||||+||++||..|++.|++|+|++.. +|.. |..+ .+++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~---~GG~-~~~~--------------------------~~~~---- 256 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER---IGGQ-VKDT--------------------------VGIE---- 256 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC---CCCc-cccC--------------------------cCcc----
Confidence 3599999999999999999999999999999752 2221 1100 0000
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
+ .+. .. ......+...+.+.+++ .++.++ +++|+++..+++. +.+.+.+|..+.+|.+|+|||+..
T Consensus 257 ~---~~~---~~-~~~~~~l~~~l~~~l~~-~gv~i~~~~~V~~I~~~~~~-~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 257 N---LIS---VP-YTTGSQLAANLEEHIKQ-YPIDLMENQRAKKIETEDGL-IVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred c---ccc---cC-CCCHHHHHHHHHHHHHH-hCCeEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCCc
Confidence 0 000 00 01234566677777776 578885 7899999765543 456677777899999999999853
No 77
>PRK14727 putative mercuric reductase; Provisional
Probab=99.28 E-value=2.4e-10 Score=127.42 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=33.6
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
.|||+|||||+||+.||..|++.|.+|+|+|+....+|
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG 53 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG 53 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence 59999999999999999999999999999998633333
No 78
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.28 E-value=1.8e-10 Score=129.71 Aligned_cols=112 Identities=29% Similarity=0.399 Sum_probs=78.0
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
..|||+|||||+||++||..|++.|++|+|++.. .+|. |+.+. +++
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~--~~~~~--------------------------~~~---- 255 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQ--VLDTM--------------------------GIE---- 255 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCe--eeccC--------------------------ccc----
Confidence 3599999999999999999999999999999753 2221 11100 000
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
+. +.+ .......+...+.+.+++ .+++++ +++|.++..+++ .+.|.+.+|..+.++.||+|||+..
T Consensus 256 ~~---~~~----~~~~~~~l~~~l~~~~~~-~gv~i~~~~~V~~I~~~~~-~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 256 NF---ISV----PETEGPKLAAALEEHVKE-YDVDIMNLQRASKLEPAAG-LIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred cc---CCC----CCCCHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEecCC-eEEEEECCCCEEEcCEEEECCCCCc
Confidence 00 000 012334567777888877 568885 789999976554 3456777777899999999999853
No 79
>PLN02546 glutathione reductase
Probab=99.28 E-value=3.8e-11 Score=135.27 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=75.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC--------CCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI--------DTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKS 77 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~--------~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~ 77 (637)
+|||+|||||++|..||..||+.|++|+|+|++. ..+| +.|- ..|.+-...++...+... .+ +-....
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~G-GtC~-n~GCiPsK~l~~aa~~~~-~~-~~~~~~ 154 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVG-GTCV-LRGCVPKKLLVYASKYSH-EF-EESRGF 154 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCcc-Cccc-CcchHHHHHHHHHHHHHH-HH-Hhhhhc
Confidence 5999999999999999999999999999999631 1111 1221 122222222222111111 01 111223
Q ss_pred CCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccc
Q psy9395 78 GIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 157 (637)
Q Consensus 78 gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~ 157 (637)
|+.........++.+..... -....+...+.+.+++ .+++++..+++.+. ... |.+ +|..+.+|.||+|||+
T Consensus 155 g~~~~~~~~~d~~~~~~~k~-~~~~~l~~~~~~~l~~-~gV~~i~G~a~~vd--~~~---V~v-~G~~~~~D~LVIATGs 226 (558)
T PLN02546 155 GWKYETEPKHDWNTLIANKN-AELQRLTGIYKNILKN-AGVTLIEGRGKIVD--PHT---VDV-DGKLYTARNILIAVGG 226 (558)
T ss_pred CcccCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHh-CCcEEEEeEEEEcc--CCE---EEE-CCEEEECCEEEEeCCC
Confidence 44221000000111111100 0011234455555655 68999877776653 222 333 5678999999999998
Q ss_pred cc
Q psy9395 158 FL 159 (637)
Q Consensus 158 ~~ 159 (637)
..
T Consensus 227 ~p 228 (558)
T PLN02546 227 RP 228 (558)
T ss_pred CC
Confidence 53
No 80
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.27 E-value=7.1e-11 Score=120.21 Aligned_cols=135 Identities=25% Similarity=0.303 Sum_probs=90.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
+|||+|||||+||++||+.|++.|++|+|+|++....+... .++. +...+ ........+.+..++.++...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~----~gg~----~~~~~-~~~~~~~~~l~~~gi~~~~~~ 91 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW----GGGM----LFSKI-VVEKPAHEILDEFGIRYEDEG 91 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc----CCCc----ceecc-cccchHHHHHHHCCCCeeecc
Confidence 58999999999999999999999999999999854332221 1111 00000 011122345566777664321
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCC--eEEEEEEec-----------ceEEEeceE
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTN--KILGVVTKI-----------GIKFFSKTV 151 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~--~v~gV~~~~-----------g~~i~a~~V 151 (637)
. . ....++..+...+.+.+.+ .+++++ ++.|.++..+++ ++.||.+.. ...++|+.|
T Consensus 92 ~----g----~~~~~~~el~~~L~~~a~e-~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~V 162 (254)
T TIGR00292 92 D----G----YVVADSAEFISTLASKALQ-AGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVV 162 (254)
T ss_pred C----c----eEEeeHHHHHHHHHHHHHH-cCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEE
Confidence 1 0 1123555677777777776 578885 889999988776 688887642 257999999
Q ss_pred EEecccc
Q psy9395 152 ILTTGTF 158 (637)
Q Consensus 152 IlAtG~~ 158 (637)
|+|||..
T Consensus 163 VdATG~~ 169 (254)
T TIGR00292 163 VDATGHD 169 (254)
T ss_pred EEeecCC
Confidence 9999973
No 81
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.27 E-value=6.9e-11 Score=129.46 Aligned_cols=150 Identities=29% Similarity=0.382 Sum_probs=88.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCcc---------------chhhHHHHH-HHh-----
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGI---------------GKSHLVKEI-DAM----- 66 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~---------------~~~~l~~el-~~~----- 66 (637)
||||||+|.||+.||+.|++.|.+|+|||+.....|. +..+.|+. ....+..++ ...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~--~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGS--SAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLND 78 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSG--GGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccc--cccccCceeeecccccccccccccccccceeeecccccccc
Confidence 8999999999999999999999999999997543332 22222211 011111111 111
Q ss_pred ----------ccHHHHHHhhcCCeEeeec------cccCchhhh---hh--hc------cCHHHHHHHHHHHHHhcCCeE
Q psy9395 67 ----------GGIMAIATDKSGIQFRILN------SSKGAAVRA---TR--AQ------VDRILYKQAIRFYLENQLNLY 119 (637)
Q Consensus 67 ----------gg~~~~~~~~~gi~~~~l~------~~~gp~~~~---~~--~~------~d~~~~~~~l~~~l~~~~gv~ 119 (637)
......|+...|+.|..-. ...++.... .. .. .....+...+.+.+++ .+++
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~gv~ 157 (417)
T PF00890_consen 79 PDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEE-AGVD 157 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHH-TTEE
T ss_pred cchhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhh-cCee
Confidence 1123466677788776510 000000000 00 01 1235677888888887 5688
Q ss_pred E-EcceeEEEEEeCCeEEEEEEe---cc--eEEEeceEEEecccccC
Q psy9395 120 L-FQEEVDDLIIKTNKILGVVTK---IG--IKFFSKTVILTTGTFLN 160 (637)
Q Consensus 120 i-~~~~V~~i~~~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~ 160 (637)
+ .++.|++|..++++|+||... +| ..++|+.||+|||++.+
T Consensus 158 i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 158 IRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred eeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 8 499999999999999999987 34 37889999999999854
No 82
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.27 E-value=5.8e-11 Score=114.67 Aligned_cols=134 Identities=26% Similarity=0.409 Sum_probs=81.6
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
++||+|||||+||++||+.||+.|++|+++|++....|.+-| ||. +...+- .......+.++.|+.++...
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~----Gg~----lf~~iV-Vq~~a~~iL~elgi~y~~~~ 87 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG----GGM----LFNKIV-VQEEADEILDELGIPYEEYG 87 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-----CT----T---EE-EETTTHHHHHHHT---EE-S
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc----ccc----ccchhh-hhhhHHHHHHhCCceeEEeC
Confidence 489999999999999999999999999999998544433221 121 111100 00011245667788776543
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeC-CeEEEEEEec-----------ceEEEeceEE
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKT-NKILGVVTKI-----------GIKFFSKTVI 152 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~-~~v~gV~~~~-----------g~~i~a~~VI 152 (637)
. | -...|...+...|...+-+ .|++++ ...|.++...+ +++.||.+.- --.++|+.||
T Consensus 88 ~--g------~~v~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~Vi 158 (230)
T PF01946_consen 88 D--G------YYVADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVI 158 (230)
T ss_dssp S--E------EEES-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEE
T ss_pred C--e------EEEEcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEE
Confidence 1 1 1135555666666666665 899998 56899998776 7999988742 1489999999
Q ss_pred Eeccc
Q psy9395 153 LTTGT 157 (637)
Q Consensus 153 lAtG~ 157 (637)
.|||-
T Consensus 159 DaTGH 163 (230)
T PF01946_consen 159 DATGH 163 (230)
T ss_dssp E---S
T ss_pred eCCCC
Confidence 99997
No 83
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.26 E-value=1.1e-10 Score=129.67 Aligned_cols=37 Identities=24% Similarity=0.525 Sum_probs=33.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~ 44 (637)
|||+|||||+||+.||..|++.|++|+|+|+. ..+|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-PLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-cccCC
Confidence 79999999999999999999999999999986 34443
No 84
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.26 E-value=6.1e-12 Score=138.12 Aligned_cols=144 Identities=25% Similarity=0.352 Sum_probs=36.3
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
||||||||+||++||++||+.|++|+|||+.. .+|...+.............. ...++....+.+...-.-.. . .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~-~lGG~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~~-~-~ 75 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG-FLGGMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGGY-P-Q 75 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS-SSTGGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc-cCCCcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhccc-c-c
Confidence 89999999999999999999999999999984 455443222111111101111 22233333333322110000 0 0
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEec---ceEEEeceEEEeccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKI---GIKFFSKTVILTTGT 157 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~---g~~i~a~~VIlAtG~ 157 (637)
.....|.....+++..+...+.+.+.+ .|+++ +++.|.++..+++++.+|.+.+ ..+++|+.||.|||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 76 EDRYGWVSNVPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000001111346777788888888866 78999 4999999999998999998865 368999999999995
No 85
>PTZ00058 glutathione reductase; Provisional
Probab=99.26 E-value=3.9e-10 Score=127.10 Aligned_cols=46 Identities=35% Similarity=0.552 Sum_probs=37.6
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc---ccccCCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ---MSCNPSI 51 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~---~~cn~s~ 51 (637)
.+|||+|||||+||..||..|++.|++|+|||++ ..+|. ..|.|+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK 95 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKK 95 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCc
Confidence 3599999999999999999999999999999985 33443 2465554
No 86
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.25 E-value=3.8e-10 Score=124.50 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=32.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
+|||+|||||+||++||..|++.|++|+|+|+..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 4999999999999999999999999999999964
No 87
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.25 E-value=9.9e-11 Score=124.42 Aligned_cols=146 Identities=23% Similarity=0.343 Sum_probs=94.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-hh-----------------hHHHHH-HHhc-
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-KS-----------------HLVKEI-DAMG- 67 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-~~-----------------~l~~el-~~~g- 67 (637)
||+|||||++|+++|+.|+++|++|+|+|++ ...+..+ .. .+|.- .. ..++++ ...+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~~aS-~~-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGSGAS-GR-SGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGI 77 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTSSGG-GS-SSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-ccccccc-cc-ccccccccccccccccccchhhhhccchhhhhhhcCc
Confidence 8999999999999999999999999999997 3333222 11 11110 00 111111 1111
Q ss_pred -------c---------------HHHHHHhhcCCeEeeecc----ccCchhh--------hhh-hccCHHHHHHHHHHHH
Q psy9395 68 -------G---------------IMAIATDKSGIQFRILNS----SKGAAVR--------ATR-AQVDRILYKQAIRFYL 112 (637)
Q Consensus 68 -------g---------------~~~~~~~~~gi~~~~l~~----~~gp~~~--------~~~-~~~d~~~~~~~l~~~l 112 (637)
+ ......+..++.++.+.. ...|... .+. .++++..+...+.+.+
T Consensus 78 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~ 157 (358)
T PF01266_consen 78 PVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEA 157 (358)
T ss_dssp SCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHH
Confidence 0 011233445565555442 1122111 122 2477889999999999
Q ss_pred HhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 113 ENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 113 ~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
++ .|++++ +++|++|..+++++.+|.+.+|. ++||.||+|+|.|
T Consensus 158 ~~-~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 158 QR-AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAW 202 (358)
T ss_dssp HH-TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGG
T ss_pred HH-hhhhccccccccchhhcccccccccccccc-cccceeEeccccc
Confidence 88 588885 77999999999999999999997 9999999999996
No 88
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.25 E-value=7.8e-10 Score=123.02 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=31.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
+|||+|||||+||++||..|++.|++|+|||++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 499999999999999999999999999999985
No 89
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.24 E-value=7.2e-11 Score=113.18 Aligned_cols=132 Identities=23% Similarity=0.337 Sum_probs=88.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhh-HHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSH-LVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~-l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
.||+|||||++|++||+.||+.|.+|+++|++....|.+ --||..... .++ .....+.++.+|.++...
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~----w~GGmlf~~iVv~------~~a~~iL~e~gI~ye~~e 100 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI----WGGGMLFNKIVVR------EEADEILDEFGIRYEEEE 100 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc----cccccccceeeec------chHHHHHHHhCCcceecC
Confidence 699999999999999999999999999999985433321 112211100 011 112356677888776543
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCC-eEEEEEEec-----------ceEEEeceEE
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTN-KILGVVTKI-----------GIKFFSKTVI 152 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~-~v~gV~~~~-----------g~~i~a~~VI 152 (637)
.. -...|...+...+...+-+ .+++++ ...|.++...++ ++.||.+.- --.++|+.||
T Consensus 101 ~g--------~~v~ds~e~~skl~~~a~~-aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~Vv 171 (262)
T COG1635 101 DG--------YYVADSAEFASKLAARALD-AGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVV 171 (262)
T ss_pred Cc--------eEEecHHHHHHHHHHHHHh-cCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEE
Confidence 21 1134544555555544444 468887 678999988877 799988642 2479999999
Q ss_pred Eeccc
Q psy9395 153 LTTGT 157 (637)
Q Consensus 153 lAtG~ 157 (637)
.|||-
T Consensus 172 DaTGH 176 (262)
T COG1635 172 DATGH 176 (262)
T ss_pred eCCCC
Confidence 99997
No 90
>PRK10015 oxidoreductase; Provisional
Probab=99.22 E-value=4.7e-11 Score=131.10 Aligned_cols=147 Identities=28% Similarity=0.319 Sum_probs=89.9
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHH-----HHHHh
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIM-----AIATD 75 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~-----~~~~~ 75 (637)
|+. .+|||||||||+||++||+.||+.|++|+|||+.. ..|...|. ||....+...++ +.++. .....
T Consensus 1 m~~-~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~-~~g~k~~~---gg~i~~~~~~~l--~~~~~~~~~i~~~~~ 73 (429)
T PRK10015 1 MSD-DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGD-SAGCKNMT---GGRLYAHTLEAI--IPGFAASAPVERKVT 73 (429)
T ss_pred CCc-cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC-CCCccccc---CceeecccHHHH--cccccccCCcccccc
Confidence 553 45999999999999999999999999999999974 34443221 222111111111 11110 00000
Q ss_pred hcCCeEeeecc---------ccCchh-hhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecce
Q psy9395 76 KSGIQFRILNS---------SKGAAV-RATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGI 144 (637)
Q Consensus 76 ~~gi~~~~l~~---------~~gp~~-~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~ 144 (637)
... +..+.. ...+.. ......+.+..+.+.|.+.+++ .|++++ +++|+++..+++++.++.+. +.
T Consensus 74 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~-~Gv~i~~~~~V~~i~~~~~~v~~v~~~-~~ 149 (429)
T PRK10015 74 REK--ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ-AGAQFIPGVRVDALVREGNKVTGVQAG-DD 149 (429)
T ss_pred cee--EEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHH-cCCEEECCcEEEEEEEeCCEEEEEEeC-Ce
Confidence 000 111100 000000 0112356777888888888887 688885 78999998777777766653 45
Q ss_pred EEEeceEEEecccc
Q psy9395 145 KFFSKTVILTTGTF 158 (637)
Q Consensus 145 ~i~a~~VIlAtG~~ 158 (637)
.+.|+.||+|+|..
T Consensus 150 ~i~A~~VI~AdG~~ 163 (429)
T PRK10015 150 ILEANVVILADGVN 163 (429)
T ss_pred EEECCEEEEccCcc
Confidence 89999999999984
No 91
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.21 E-value=9.6e-11 Score=127.07 Aligned_cols=149 Identities=18% Similarity=0.260 Sum_probs=92.1
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh----
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK---- 76 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~---- 76 (637)
|.| +.|||+|||||++|+++|+.|++.|.+|+|||+.... ...++ .+... .-.+-++.+| ++....+.
T Consensus 3 ~~~-~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~-~~~r~----~~l~~-~s~~~l~~lg-l~~~~~~~~~~~ 74 (388)
T PRK07494 3 MEK-EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY-ADLRT----TALLG-PSIRFLERLG-LWARLAPHAAPL 74 (388)
T ss_pred CCC-CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC-CCcch----hhCcH-HHHHHHHHhC-chhhhHhhccee
Confidence 554 3589999999999999999999999999999997432 11110 11111 1122333333 11111111
Q ss_pred cCCeEeeeccc--cCchh---------hhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceE
Q psy9395 77 SGIQFRILNSS--KGAAV---------RATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIK 145 (637)
Q Consensus 77 ~gi~~~~l~~~--~gp~~---------~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~ 145 (637)
..+++...++. ..+.. ......+++..+.+.+.+.+.+.+++..++++|+++..+++.+ .|.+.+|.+
T Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~-~v~~~~g~~ 153 (388)
T PRK07494 75 QSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEV-TVTLADGTT 153 (388)
T ss_pred eEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeE-EEEECCCCE
Confidence 11111111110 00000 0112245667788888888887777877799999998776655 477778888
Q ss_pred EEeceEEEecccc
Q psy9395 146 FFSKTVILTTGTF 158 (637)
Q Consensus 146 i~a~~VIlAtG~~ 158 (637)
++||.||.|+|.+
T Consensus 154 ~~a~~vI~AdG~~ 166 (388)
T PRK07494 154 LSARLVVGADGRN 166 (388)
T ss_pred EEEeEEEEecCCC
Confidence 9999999999995
No 92
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.21 E-value=8.2e-10 Score=122.67 Aligned_cols=33 Identities=45% Similarity=0.731 Sum_probs=31.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
+|||+|||||+||++||..|++.|++|+|||++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 399999999999999999999999999999983
No 93
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.21 E-value=3.3e-10 Score=128.42 Aligned_cols=155 Identities=24% Similarity=0.275 Sum_probs=93.9
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCC--CCCcccccCCCCccc---------------hhhH--------
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNID--TIGQMSCNPSIGGIG---------------KSHL-------- 59 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~--~~G~~~cn~s~gg~~---------------~~~l-------- 59 (637)
.++||+|||+|.||++||+.|++.|++|+|||+... ..|.. ..+.|++. ...+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s--~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~ 80 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA--FWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSA 80 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce--eccCCceeccCCHHHHhcCcccCHHHHHHHHHhcc
Confidence 349999999999999999999999999999999752 22321 12222210 0000
Q ss_pred -------------HHHHHH-hccHHHHHHhhcCCeEeeecc--c------cCchhhhhhhcc---CHHHHHHHHHHHHH-
Q psy9395 60 -------------VKEIDA-MGGIMAIATDKSGIQFRILNS--S------KGAAVRATRAQV---DRILYKQAIRFYLE- 113 (637)
Q Consensus 60 -------------~~el~~-~gg~~~~~~~~~gi~~~~l~~--~------~gp~~~~~~~~~---d~~~~~~~l~~~l~- 113 (637)
++.+-. .......|++..|++|..... . .++....++... ....+...|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~ 160 (549)
T PRK12834 81 GFDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVRE 160 (549)
T ss_pred CCCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHH
Confidence 111111 123445677778888854210 0 000000111111 11234455555543
Q ss_pred --hcCCeEE-EcceeEEEEEeCCeEEEEEEe---c--------------c-eEEEeceEEEecccccCC
Q psy9395 114 --NQLNLYL-FQEEVDDLIIKTNKILGVVTK---I--------------G-IKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 114 --~~~gv~i-~~~~V~~i~~~~~~v~gV~~~---~--------------g-~~i~a~~VIlAtG~~~~~ 161 (637)
+.+++++ +++++++|..++++|+||... + + ..+.|+.||||||+|...
T Consensus 161 ~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n 229 (549)
T PRK12834 161 AAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGN 229 (549)
T ss_pred HHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccC
Confidence 2356898 499999999888999999852 1 1 378999999999998654
No 94
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.20 E-value=1.3e-09 Score=121.02 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=74.8
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
+|+|||||+||+.||..|++.|++|+|||++ ..+|.+ .|.|+. .+++..+.+.. .+.....|+.+..-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk------~l~~~a~~~~~--~~~~~~~g~~~~~~ 72 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTK------SLLESAEVHDK--VKKANHFGITLPNG 72 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccch------HHHHHHHHHHH--HHHHHhcCccccCC
Confidence 6999999999999999999999999999996 344432 355543 22222111110 11122344432100
Q ss_pred c-cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc-eEEEeceEEEecccccC
Q psy9395 85 N-SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG-IKFFSKTVILTTGTFLN 160 (637)
Q Consensus 85 ~-~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g-~~i~a~~VIlAtG~~~~ 160 (637)
. ...+..+....... ...+...+...++. .+++++..++..+ ++..+ .|...++ .++++|.||+|||+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~~~~g~a~~~--~~~~v-~v~~~~~~~~~~~d~lviATGs~p~ 145 (458)
T PRK06912 73 SISIDWKQMQARKSQI-VTQLVQGIQYLMKK-NKIKVIQGKASFE--TDHRV-RVEYGDKEEVVDAEQFIIAAGSEPT 145 (458)
T ss_pred CCccCHHHHHHHHHHH-HHHHHHHHHHHHhh-CCcEEEEEEEEEc--cCCEE-EEeeCCCcEEEECCEEEEeCCCCCC
Confidence 0 00000100000000 01122233333443 6898887777554 23333 3544444 47999999999999643
No 95
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.20 E-value=7.7e-10 Score=122.97 Aligned_cols=142 Identities=23% Similarity=0.287 Sum_probs=77.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEee
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRI 83 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~ 83 (637)
.||+|||||++|+.||..|++.|++|+|+|+. ...|.+ .|.|+. .++...+... . .+.+...|+....
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK------~l~~~a~~~~-~-~~~~~~~g~~~~~ 72 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSK------TLIATAEVRT-E-LRRAAELGIRFID 72 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchH------HHHHHHHHHH-H-HHHHHhCCccccc
Confidence 48999999999999999999999999999986 333321 233332 2221111111 0 1112233442210
Q ss_pred --eccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEE--EeCCeEEEEEEecce--EEEeceEEEeccc
Q psy9395 84 --LNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLI--IKTNKILGVVTKIGI--KFFSKTVILTTGT 157 (637)
Q Consensus 84 --l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~--~~~~~v~gV~~~~g~--~i~a~~VIlAtG~ 157 (637)
.....++.+......+- ..+...+.+.+++ .+++++..++..+. .+... +.|.+.+|. .+.+|.||+|||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-~gV~~~~g~~~~~~~~~~~~~-v~V~~~~g~~~~~~~d~lViATGs 149 (466)
T PRK07845 73 DGEARVDLPAVNARVKALA-AAQSADIRARLER-EGVRVIAGRGRLIDPGLGPHR-VKVTTADGGEETLDADVVLIATGA 149 (466)
T ss_pred CcccccCHHHHHHHHHHHH-HHHHHHHHHHHHH-CCCEEEEEEEEEeecccCCCE-EEEEeCCCceEEEecCEEEEcCCC
Confidence 00000011111000000 1122344455655 68999877776643 33443 345555664 7999999999999
Q ss_pred ccC
Q psy9395 158 FLN 160 (637)
Q Consensus 158 ~~~ 160 (637)
.+.
T Consensus 150 ~p~ 152 (466)
T PRK07845 150 SPR 152 (466)
T ss_pred CCC
Confidence 643
No 96
>PLN02661 Putative thiazole synthesis
Probab=99.20 E-value=1.7e-10 Score=120.82 Aligned_cols=136 Identities=24% Similarity=0.316 Sum_probs=88.6
Q ss_pred cccEEEECcchHHHHHHHHHhhC-CCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARM-GQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~-G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
++||+|||||++|+.||+.|++. |++|+|+|++.. .|.+.|. +|. +...+ ...+...+++++.|+.|+..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~-~GGG~~~---gg~----l~~~~-vv~~~a~e~LeElGV~fd~~ 162 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS-PGGGAWL---GGQ----LFSAM-VVRKPAHLFLDELGVPYDEQ 162 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc-cccceee---Ccc----ccccc-ccccHHHHHHHHcCCCcccC
Confidence 48999999999999999999986 899999999743 3333321 111 11110 00111234567778866432
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe------c--c------eEEEec
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK------I--G------IKFFSK 149 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~------~--g------~~i~a~ 149 (637)
+. ++. ..+...+...+.+.+.+.+|++++ +..|.++..+++++.||.+. + + ..++|+
T Consensus 163 dg--y~v------v~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak 234 (357)
T PLN02661 163 EN--YVV------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK 234 (357)
T ss_pred CC--eeE------ecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECC
Confidence 11 111 112234455666655555899997 77999999888999998852 1 1 368999
Q ss_pred eEEEecccc
Q psy9395 150 TVILTTGTF 158 (637)
Q Consensus 150 ~VIlAtG~~ 158 (637)
.||+|||+.
T Consensus 235 aVVlATGh~ 243 (357)
T PLN02661 235 VVVSSCGHD 243 (357)
T ss_pred EEEEcCCCC
Confidence 999999973
No 97
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.18 E-value=1.2e-09 Score=121.35 Aligned_cols=139 Identities=21% Similarity=0.327 Sum_probs=72.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR 82 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~ 82 (637)
+|||+|||||+||+.||..|++.|++|+|||+. ..+|.+ .|.|+. .+....+.+. .+. .....++...
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~-~~GG~~~~~gc~Psk------~l~~~~~~~~-~~~-~~~~~g~~~~ 71 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE-YLGGTCLNVGCIPTK------ALLHSAEVYD-EIK-HAKDYGIEVE 71 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeecCccchH------HHHHHhhHHH-HHH-HHHhcCCCCC
Confidence 389999999999999999999999999999983 344432 233332 1111111111 011 1223343211
Q ss_pred eeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc-eEEEeceEEEeccccc
Q psy9395 83 ILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG-IKFFSKTVILTTGTFL 159 (637)
Q Consensus 83 ~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g-~~i~a~~VIlAtG~~~ 159 (637)
... ..++.+......+ ...+...+...+++ .+++++..++..+ +... +.|...+| ..+++|.||+|||+..
T Consensus 72 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~~~~g~~~~~--~~~~-~~v~~~~g~~~~~~d~lVlAtG~~p 143 (461)
T TIGR01350 72 NVS-VDWEKMQKRKNKV-VKKLVGGVKGLLKK-NKVTVIKGEAKFL--DPGT-VLVTGENGEETLTAKNIIIATGSRP 143 (461)
T ss_pred CCc-CCHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCEEEEEEEEEc--cCCE-EEEecCCCcEEEEeCEEEEcCCCCC
Confidence 000 0001100000000 01122223333444 6888876666544 2333 23444444 5799999999999864
No 98
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.18 E-value=6.6e-10 Score=124.86 Aligned_cols=157 Identities=21% Similarity=0.264 Sum_probs=92.1
Q ss_pred CCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCC-ccc----h-----------hhHHHHHHH
Q psy9395 2 LFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIG-GIG----K-----------SHLVKEIDA 65 (637)
Q Consensus 2 ~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~g-g~~----~-----------~~l~~el~~ 65 (637)
+++.++||||||+| ||++||+.|++.|++|+|||+.....|.. ..+.+ ++. . ....+.+..
T Consensus 3 ~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t--~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~ 79 (513)
T PRK12837 3 AWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT--AYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHA 79 (513)
T ss_pred CCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce--ecCCCceeccCCChhhhhcCcchHHHHHHHHHHH
Confidence 35567999999999 99999999999999999999974323322 11222 110 0 011111111
Q ss_pred ----------------hccHHHHHHhh-cCCeEeeecc--ccC--ch--------hhh--------------hhhc----
Q psy9395 66 ----------------MGGIMAIATDK-SGIQFRILNS--SKG--AA--------VRA--------------TRAQ---- 98 (637)
Q Consensus 66 ----------------~gg~~~~~~~~-~gi~~~~l~~--~~g--p~--------~~~--------------~~~~---- 98 (637)
-+.....|.+. .|+.|..... ..+ |. +.. .+..
T Consensus 80 ~~~~~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (513)
T PRK12837 80 VVGDRTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTE 159 (513)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchh
Confidence 11122355554 5887754210 000 00 000 0000
Q ss_pred ----------cCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec-c--eEEEec-eEEEecccccCC
Q psy9395 99 ----------VDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI-G--IKFFSK-TVILTTGTFLNG 161 (637)
Q Consensus 99 ----------~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~-g--~~i~a~-~VIlAtG~~~~~ 161 (637)
.....+...+.+.+.+.++++++ +++|++|..++++|.||.... | ..++|+ .||+|||+|.+.
T Consensus 160 ~~~~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 160 RLGAPPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred hhccCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCccCC
Confidence 00113445555555555789985 999999988888999987643 3 368896 799999998543
No 99
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.18 E-value=3.1e-10 Score=123.26 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=92.5
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCC--ccchhhHHHHHHHhccHHHHHHhhcC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIG--GIGKSHLVKEIDAMGGIMAIATDKSG 78 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~g--g~~~~~l~~el~~~gg~~~~~~~~~g 78 (637)
|++-.++||+|||||++|+++|+.|++.|.+|+|||+... .....+.+... .+.. .-.+-++.+|- +....+...
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~-~~~~~~~~~~r~~~l~~-~~~~~l~~lGl-~~~~~~~~~ 77 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP-PRWQADQPDLRVYAFAA-DNAALLDRLGV-WPAVRAARA 77 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC-cccccCCCCCEEEEecH-HHHHHHHHCCc-hhhhhHhhC
Confidence 6665679999999999999999999999999999999742 11111111100 1111 11222333331 111111111
Q ss_pred CeE---eeeccc-----cCch----hhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceE
Q psy9395 79 IQF---RILNSS-----KGAA----VRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIK 145 (637)
Q Consensus 79 i~~---~~l~~~-----~gp~----~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~ 145 (637)
..+ ...+.. ..+. .......+++..+.+.+.+.+++ .+++++ +++|+++..+++.+ .|.+.+|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~~~~v-~v~~~~g~~ 155 (392)
T PRK08773 78 QPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHA-AGVQLHCPARVVALEQDADRV-RLRLDDGRR 155 (392)
T ss_pred CcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHh-CCCEEEcCCeEEEEEecCCeE-EEEECCCCE
Confidence 111 111100 0000 00112346677888888888887 688885 88999998766654 477777888
Q ss_pred EEeceEEEecccc
Q psy9395 146 FFSKTVILTTGTF 158 (637)
Q Consensus 146 i~a~~VIlAtG~~ 158 (637)
+.||.||.|+|.+
T Consensus 156 ~~a~~vV~AdG~~ 168 (392)
T PRK08773 156 LEAALAIAADGAA 168 (392)
T ss_pred EEeCEEEEecCCC
Confidence 9999999999996
No 100
>PRK06185 hypothetical protein; Provisional
Probab=99.17 E-value=2.9e-10 Score=124.15 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=92.7
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHh-----
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATD----- 75 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~----- 75 (637)
|++...|||+|||||++|+++|+.|++.|++|+|+|+.... ....+..+ +. ....+.++.+|-. ..+.+
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~-~~~~r~~~---l~-~~s~~~L~~lG~~-~~~~~~~~~~ 74 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF-LRDFRGDT---VH-PSTLELMDELGLL-ERFLELPHQK 74 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-CccccCce---eC-hhHHHHHHHcCCh-hHHhhcccce
Confidence 77777799999999999999999999999999999996321 11111111 11 1112223333321 11111
Q ss_pred hcCCeEeeeccc----cCchh---hhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe--cc-e
Q psy9395 76 KSGIQFRILNSS----KGAAV---RATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK--IG-I 144 (637)
Q Consensus 76 ~~gi~~~~l~~~----~gp~~---~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~--~g-~ 144 (637)
...+++..-+.. .+... ......+.+..+.+.+.+.+.+.++++++ +++|+++..+++++.+|.+. +| .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~ 154 (407)
T PRK06185 75 VRTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPG 154 (407)
T ss_pred eeeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcE
Confidence 011111110000 00000 01112345567778888888776789985 88999998888887666543 45 4
Q ss_pred EEEeceEEEecccc
Q psy9395 145 KFFSKTVILTTGTF 158 (637)
Q Consensus 145 ~i~a~~VIlAtG~~ 158 (637)
+++|+.||.|+|.+
T Consensus 155 ~i~a~~vI~AdG~~ 168 (407)
T PRK06185 155 EIRADLVVGADGRH 168 (407)
T ss_pred EEEeCEEEECCCCc
Confidence 79999999999996
No 101
>PLN02463 lycopene beta cyclase
Probab=99.14 E-value=8.1e-10 Score=121.40 Aligned_cols=139 Identities=23% Similarity=0.247 Sum_probs=89.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh--cCCeEee
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK--SGIQFRI 83 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~--~gi~~~~ 83 (637)
.|||+|||||+||+++|+.|++.|++|+|+|+.+.. ...|+ .+ ....+++.++- . ...+. ....+.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~--~~p~~---~g----~w~~~l~~lgl-~-~~l~~~w~~~~v~- 95 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS--IWPNN---YG----VWVDEFEALGL-L-DCLDTTWPGAVVY- 95 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc--hhccc---cc----hHHHHHHHCCc-H-HHHHhhCCCcEEE-
Confidence 589999999999999999999999999999986321 11111 11 12233333331 0 11111 111111
Q ss_pred eccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 84 LNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 84 l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.+.........+...+++..+.+.+.+.+.+ .+++++.++|+++..++++ +.|.+.+|.+++|+.||+|+|..
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~-~GV~~~~~~V~~I~~~~~~-~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIA-NGVQFHQAKVKKVVHEESK-SLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhh-cCCEEEeeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECcCCC
Confidence 1100000011122357888888888888876 6888888899999876664 56888888899999999999984
No 102
>PRK07846 mycothione reductase; Reviewed
Probab=99.13 E-value=3.5e-09 Score=117.16 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.6
Q ss_pred ccCccccccCCCCEEEEEeecCCCCHH-HHHHHHHHHHHHHHH
Q psy9395 353 NLKSSLETKQIHGLFFAGQINGTTGYE-EAASQGLLAGLNAAL 394 (637)
Q Consensus 353 ~l~~tlesk~v~gLf~aGei~G~~Gy~-eA~a~G~~AG~naa~ 394 (637)
.+|+.|+|. +||+|++||+++..... .|..||.+|+.|++.
T Consensus 283 ~Vd~~~~Ts-~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 283 VVDEYQRTS-AEGVFALGDVSSPYQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred eECCCcccC-CCCEEEEeecCCCccChhHHHHHHHHHHHHHcC
Confidence 466788865 99999999998875444 788999999999963
No 103
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.13 E-value=1.2e-09 Score=120.52 Aligned_cols=149 Identities=25% Similarity=0.275 Sum_probs=89.5
Q ss_pred cEEEECcchHHHHHHHHHhhCC-CcEEEEccCCCCCCcccccCCCCcc---------------chhhHHHHH--------
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG-QKTLLLSHNIDTIGQMSCNPSIGGI---------------GKSHLVKEI-------- 63 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~~~~~G~~~cn~s~gg~---------------~~~~l~~el-------- 63 (637)
||||||||.||++||+.|++.| .+|+|||+.....|... .+.|++ ....+++.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~--~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 78 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA--IAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIN 78 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc--ccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 8999999999999999999999 99999999754333321 111111 011111111
Q ss_pred --------HHhccHHHHHHhhcCCeEeeec--cccCchhh---hhh-hccCHHHHHHHHHHHHHhcCCeEEE-cceeEEE
Q psy9395 64 --------DAMGGIMAIATDKSGIQFRILN--SSKGAAVR---ATR-AQVDRILYKQAIRFYLENQLNLYLF-QEEVDDL 128 (637)
Q Consensus 64 --------~~~gg~~~~~~~~~gi~~~~l~--~~~gp~~~---~~~-~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i 128 (637)
.........|+. .++.++... ...+.... .+. ...+...+...+.+.+++ .+++++ ++.|+++
T Consensus 79 ~~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~-~gv~i~~~~~v~~l 156 (439)
T TIGR01813 79 DPELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKK-EGIDTRLNSKVEDL 156 (439)
T ss_pred CHHHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHH-cCCEEEeCCEeeEe
Confidence 111112234555 455443211 00111100 000 012334577778888877 678884 8999999
Q ss_pred EEe-CCeEEEEEEec--ce--EEEeceEEEecccccC
Q psy9395 129 IIK-TNKILGVVTKI--GI--KFFSKTVILTTGTFLN 160 (637)
Q Consensus 129 ~~~-~~~v~gV~~~~--g~--~i~a~~VIlAtG~~~~ 160 (637)
..+ ++++++|...+ +. .+.++.||+|||++..
T Consensus 157 ~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 157 IQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred EECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 875 46788877643 32 5789999999999865
No 104
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.12 E-value=4.4e-10 Score=116.48 Aligned_cols=143 Identities=22% Similarity=0.267 Sum_probs=86.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
|||+|||||+||+++|+.|++.|.+|+|+|+... .+...|.... .. .....++..+..... ......+...+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~-~~~~~~~~~~---~~-~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 73 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF-PRYKPCGGAL---SP-RVLEELDLPLELIVN--LVRGARFFSPNG 73 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC-CCcccccCcc---CH-hHHHHhcCCchhhhh--heeeEEEEcCCC
Confidence 7999999999999999999999999999999742 2222232211 11 112222221110000 001111110000
Q ss_pred c--cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEe-cceEEEeceEEEecccc
Q psy9395 87 S--KGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTK-IGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~--~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~-~g~~i~a~~VIlAtG~~ 158 (637)
. ..+........+++..+.+.+.+.+.+ .++++ ++++|+++..+++++. +.+. ++.+++||.||+|+|.+
T Consensus 74 ~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~-~gv~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 74 DSVEIPIETELAYVIDRDAFDEQLAERAQE-AGAELRLGTTVLDVEIHDDRVV-VIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred cEEEeccCCCcEEEEEHHHHHHHHHHHHHH-cCCEEEeCcEEeeEEEeCCEEE-EEEcCccEEEEeCEEEECCCcc
Confidence 0 000000112357788888889888886 67888 5899999987777643 3333 34689999999999985
No 105
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.12 E-value=1.1e-09 Score=124.05 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=96.2
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccC-C-CCccc----hhh----------HHHHHH-----
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNP-S-IGGIG----KSH----------LVKEID----- 64 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~-s-~gg~~----~~~----------l~~el~----- 64 (637)
.|||+|||||+.|+++|+.|+++|++|+|||++....|..+-|. - ++|.. ... ++.++.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~~ 85 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVE 85 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhhc
Confidence 59999999999999999999999999999999632222211110 0 11110 000 011110
Q ss_pred HhccH--------------HHHHHhhcCCeEeeecc----ccCch--------hhhhhhccCHHHHHHHHHHHHHhcCCe
Q psy9395 65 AMGGI--------------MAIATDKSGIQFRILNS----SKGAA--------VRATRAQVDRILYKQAIRFYLENQLNL 118 (637)
Q Consensus 65 ~~gg~--------------~~~~~~~~gi~~~~l~~----~~gp~--------~~~~~~~~d~~~~~~~l~~~l~~~~gv 118 (637)
..+++ ...+....|+..+.+.. ...|. ++.+..++|+..+..++...+.+ .|+
T Consensus 86 ~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~-~Ga 164 (546)
T PRK11101 86 PTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKE-HGA 164 (546)
T ss_pred ccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHh-CCC
Confidence 00110 01233445666555542 12232 22233578888888888777776 577
Q ss_pred EEE-cceeEEEEEeCCeEEEEEEec---c--eEEEeceEEEecccc
Q psy9395 119 YLF-QEEVDDLIIKTNKILGVVTKI---G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 119 ~i~-~~~V~~i~~~~~~v~gV~~~~---g--~~i~a~~VIlAtG~~ 158 (637)
+++ +++|+++..+++++++|.+.+ + ..|+|+.||+|||.|
T Consensus 165 ~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 165 QILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred EEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 875 889999988888888887643 2 479999999999998
No 106
>PLN02697 lycopene epsilon cyclase
Probab=99.11 E-value=1e-09 Score=122.56 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=89.0
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh--cCCeEe
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK--SGIQFR 82 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~--~gi~~~ 82 (637)
..|||+|||||+||+++|.++++.|++|+|||+..+ ..|| .|.+. .+++.++- ....+. .+..+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p----~~~n---~GvW~----~~l~~lgl--~~~i~~~w~~~~v~ 173 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP----FTNN---YGVWE----DEFKDLGL--EDCIEHVWRDTIVY 173 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc----CCCc---cccch----hHHHhcCc--HHHHHhhcCCcEEE
Confidence 359999999999999999999999999999998522 1222 22221 12222221 001110 011111
Q ss_pred eeccccCch-hhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 83 ILNSSKGAA-VRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 83 ~l~~~~gp~-~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.-+.. +. ......++++..+.+.+.+.+.+ .++++++++|+++..+++.+..+.+.+|.++.|+.||+|+|.+
T Consensus 174 ~~~~~--~~~~~~~Yg~V~R~~L~~~Ll~~a~~-~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~ 247 (529)
T PLN02697 174 LDDDK--PIMIGRAYGRVSRTLLHEELLRRCVE-SGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAA 247 (529)
T ss_pred ecCCc--eeeccCcccEEcHHHHHHHHHHHHHh-cCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcC
Confidence 10100 10 01112257888888999888876 6888888999999776665554556678889999999999997
No 107
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.11 E-value=2e-09 Score=121.92 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEe-cc--eEEEe-ceEEEecccccCC
Q psy9395 104 YKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTK-IG--IKFFS-KTVILTTGTFLNG 161 (637)
Q Consensus 104 ~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~-~g--~~i~a-~~VIlAtG~~~~~ 161 (637)
+...|.+.+++ .++++ .++.|++|..++++|+||... +| ..+.| +.||+|||+|.+.
T Consensus 219 l~~~L~~~~~~-~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 219 LAAGLFAGVLR-AGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHH-CCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 44556666766 68888 499999998777899998654 34 24666 5799999998654
No 108
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.10 E-value=2.4e-09 Score=119.45 Aligned_cols=33 Identities=42% Similarity=0.711 Sum_probs=31.4
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|||+|||||++|..||+.|++.|++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 499999999999999999999999999999973
No 109
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.09 E-value=4.1e-09 Score=116.66 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=33.7
Q ss_pred ccCccccccCCCCEEEEEeecCCCCHH-HHHHHHHHHHHHHHH
Q psy9395 353 NLKSSLETKQIHGLFFAGQINGTTGYE-EAASQGLLAGLNAAL 394 (637)
Q Consensus 353 ~l~~tlesk~v~gLf~aGei~G~~Gy~-eA~a~G~~AG~naa~ 394 (637)
.+|+.|+|. +||+|++||+++..... .|..||.+|+.|++.
T Consensus 286 ~vd~~~~Ts-~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 286 KVDEYGRTS-ARGVWALGDVSSPYQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred eeCCCcccC-CCCEEEeecccCcccChhHHHHHHHHHHHHhcC
Confidence 456788865 99999999998876544 788999999999863
No 110
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.09 E-value=1.5e-09 Score=117.84 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=86.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh--cC-CeEeee
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK--SG-IQFRIL 84 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~--~g-i~~~~l 84 (637)
||+|||||+||+++|+.|++.|++|+|||++....+...| +... ..++.++ + ...... .+ ..+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~-----~~~~----~~~~~~~-~-~~~~~~~~~~~~~~~~~ 69 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTY-----GVWD----DDLSDLG-L-ADCVEHVWPDVYEYRFP 69 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccc-----cccH----hhhhhhc-h-hhHHhhcCCCceEEecC
Confidence 8999999999999999999999999999997433222111 1111 1111111 0 001110 11 101100
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+.. .........+++..+.+.+.+.+.+ .+++++.++|+++..+++..+.|.+.+|..++|+.||+|+|.+
T Consensus 70 ~~~--~~~~~~~~~i~~~~l~~~l~~~~~~-~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 70 KQP--RKLGTAYGSVDSTRLHEELLQKCPE-GGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFG 140 (388)
T ss_pred Ccc--hhcCCceeEEcHHHHHHHHHHHHHh-cCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCc
Confidence 000 0011112247788888899888887 4788888889988766455566777788889999999999996
No 111
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.08 E-value=1.8e-09 Score=117.09 Aligned_cols=150 Identities=21% Similarity=0.248 Sum_probs=89.4
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-hhhHHHHHHHhccHHHHHHhhc--CCe-E
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-KSHLVKEIDAMGGIMAIATDKS--GIQ-F 81 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-~~~l~~el~~~gg~~~~~~~~~--gi~-~ 81 (637)
.+||+|||||+||+++|+.|++.|.+|+|+|+..... ...+........ .....+.++.+| +........ .+. .
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~~~~~~~r~~~l~~~~~~~l~~~g-~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR-PADDAWDSRVYAISPSSQAFLERLG-VWQALDAARLAPVYDM 82 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc-ccCCCCCCceEeecHHHHHHHHHcC-chhhhhhhcCCcceEE
Confidence 4899999999999999999999999999999974322 111111111111 011122233332 111110000 000 0
Q ss_pred eeeccccC--------chhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEE
Q psy9395 82 RILNSSKG--------AAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVIL 153 (637)
Q Consensus 82 ~~l~~~~g--------p~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIl 153 (637)
.......+ .........+++..+.+.+.+.+++.+++++++++|+++..+++.+ .|.+.+|.+++||.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~-~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAA-TLTLADGQVLRADLVVG 161 (388)
T ss_pred EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeE-EEEECCCCEEEeeEEEE
Confidence 11100000 0000111245677888899888887666888888899987666654 57777787899999999
Q ss_pred ecccc
Q psy9395 154 TTGTF 158 (637)
Q Consensus 154 AtG~~ 158 (637)
|+|.+
T Consensus 162 adG~~ 166 (388)
T PRK07608 162 ADGAH 166 (388)
T ss_pred eCCCC
Confidence 99996
No 112
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.08 E-value=1.7e-09 Score=117.33 Aligned_cols=145 Identities=21% Similarity=0.230 Sum_probs=94.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-hhhHHHHHHHhccHHHHHHhhcCCe-Ee-
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-KSHLVKEIDAMGGIMAIATDKSGIQ-FR- 82 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-~~~l~~el~~~gg~~~~~~~~~gi~-~~- 82 (637)
.+||+|||||++|+++|+.|++.|++|+|+|+.+...-... .+.. ...-.+-++.+|-. ..+. ..+.. ..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~-----r~~~l~~~~~~~L~~lG~~-~~i~-~~~~~~~~~ 74 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG-----RGIALSPNALRALERLGLW-DRLE-ALGVPPLHV 74 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc-----eeeeecHhHHHHHHHcCCh-hhhh-hccCCceee
Confidence 47999999999999999999999999999999621111110 1111 11223334444431 1111 11110 00
Q ss_pred -eec--cc-----cCchh--hhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe-cceEEEece
Q psy9395 83 -ILN--SS-----KGAAV--RATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK-IGIKFFSKT 150 (637)
Q Consensus 83 -~l~--~~-----~gp~~--~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~-~g~~i~a~~ 150 (637)
... +. ..... ..+...+.+..+...|.+.+.+.++++++ +++|+.+..+++.+. +++. +|++++||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~l 153 (387)
T COG0654 75 MVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADL 153 (387)
T ss_pred EEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCE
Confidence 000 00 00000 12233567788999999999988889995 899999998877776 7777 899999999
Q ss_pred EEEecccc
Q psy9395 151 VILTTGTF 158 (637)
Q Consensus 151 VIlAtG~~ 158 (637)
||.|+|.+
T Consensus 154 lVgADG~~ 161 (387)
T COG0654 154 LVGADGAN 161 (387)
T ss_pred EEECCCCc
Confidence 99999986
No 113
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.08 E-value=1.5e-09 Score=117.95 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=89.2
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCC--ccchhhHHHHHHHhccHHHHHHhhcCCeE
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIG--GIGKSHLVKEIDAMGGIMAIATDKSGIQF 81 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~g--g~~~~~l~~el~~~gg~~~~~~~~~gi~~ 81 (637)
.+.|||+|||||++|+++|+.|++.|++|+|+|+.....-.....+... .+.. .-.+.++.+|-. ..........+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~-~~~~~l~~lGl~-~~~~~~~~~~~ 80 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISA-ASVALLKGLGVW-DAVQAMRSHPY 80 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccH-HHHHHHHHcCCh-hhhhhhhCccc
Confidence 3569999999999999999999999999999998632110000000000 1111 112223333311 11111000100
Q ss_pred ---eeeccccC--------chhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEec
Q psy9395 82 ---RILNSSKG--------AAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSK 149 (637)
Q Consensus 82 ---~~l~~~~g--------p~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~ 149 (637)
.......+ .........+++..+.+.+.+.+.+.++++++ +++|+++..+++. +.|.+.+|.+++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~ 159 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADGEEIQAK 159 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeC
Confidence 00000000 00001122466777888888888776789985 8899998766654 45677778889999
Q ss_pred eEEEecccc
Q psy9395 150 TVILTTGTF 158 (637)
Q Consensus 150 ~VIlAtG~~ 158 (637)
.||.|+|.+
T Consensus 160 ~vI~AdG~~ 168 (391)
T PRK08020 160 LVIGADGAN 168 (391)
T ss_pred EEEEeCCCC
Confidence 999999996
No 114
>PRK06847 hypothetical protein; Provisional
Probab=99.08 E-value=1.1e-09 Score=118.12 Aligned_cols=147 Identities=13% Similarity=0.156 Sum_probs=88.8
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh----cCC
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK----SGI 79 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~----~gi 79 (637)
.++.||+|||||+||+++|+.|++.|.+|+|+|+.... ....+..... ....+.++.++- ...+.+. ..+
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~g~g~~l~----~~~~~~l~~~gl-~~~~~~~~~~~~~~ 75 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW-RVYGAGITLQ----GNALRALRELGV-LDECLEAGFGFDGV 75 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC-ccCCceeeec----HHHHHHHHHcCC-HHHHHHhCCCccce
Confidence 34589999999999999999999999999999997422 1111100010 112233333331 1111110 111
Q ss_pred eEeeeccc---c--Cchhh----hhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEec
Q psy9395 80 QFRILNSS---K--GAAVR----ATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSK 149 (637)
Q Consensus 80 ~~~~l~~~---~--gp~~~----~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~ 149 (637)
.+...++. . .+... .....+++..+.+.+.+.+.+ .++++ ++++|+++..+++. +.|.+.+|.++.||
T Consensus 76 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad 153 (375)
T PRK06847 76 DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARA-AGADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYD 153 (375)
T ss_pred EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHH-hCCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcC
Confidence 11100000 0 00000 111246677788888888876 57887 48899999766655 45777788899999
Q ss_pred eEEEecccc
Q psy9395 150 TVILTTGTF 158 (637)
Q Consensus 150 ~VIlAtG~~ 158 (637)
.||+|+|.+
T Consensus 154 ~vI~AdG~~ 162 (375)
T PRK06847 154 LVVGADGLY 162 (375)
T ss_pred EEEECcCCC
Confidence 999999986
No 115
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.08 E-value=1.9e-09 Score=116.47 Aligned_cols=148 Identities=23% Similarity=0.264 Sum_probs=91.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc--------h-------hhHHHHHHH-hc---
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG--------K-------SHLVKEIDA-MG--- 67 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~--------~-------~~l~~el~~-~g--- 67 (637)
|||+|||||.+|+++|++|+++|++|+|+|+.....+..+.+. .++.. . ..+++++.. .+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~-~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~ 79 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHG-QSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKL 79 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCC-CCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCee
Confidence 6999999999999999999999999999999632211111111 11110 0 112222221 11
Q ss_pred ----c----------H---HHHHHhhcCCeEeeecc----ccCchh---------hhh-hhccCHHHHHHHHHHHHHhcC
Q psy9395 68 ----G----------I---MAIATDKSGIQFRILNS----SKGAAV---------RAT-RAQVDRILYKQAIRFYLENQL 116 (637)
Q Consensus 68 ----g----------~---~~~~~~~~gi~~~~l~~----~~gp~~---------~~~-~~~~d~~~~~~~l~~~l~~~~ 116 (637)
+ . +.......|+..+.++. ...|.+ +.+ ...+++..+...+.+.+++ .
T Consensus 80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~-~ 158 (380)
T TIGR01377 80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEA-H 158 (380)
T ss_pred EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHH-c
Confidence 0 0 01223345555555442 122221 111 2356788888888888877 6
Q ss_pred CeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 117 NLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 117 gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+++++ +++|+++..+++.+ .|.+.++ ++.|+.||+|+|+|
T Consensus 159 g~~~~~~~~V~~i~~~~~~~-~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLV-TVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred CCEEECCCeEEEEEecCCeE-EEEeCCC-EEEeCEEEEecCcc
Confidence 78885 77899998766654 4666665 79999999999997
No 116
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.08 E-value=1.5e-09 Score=121.81 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=88.8
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCccccc--CCCCccch-----hhHHHH-HH-------H
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCN--PSIGGIGK-----SHLVKE-ID-------A 65 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn--~s~gg~~~-----~~l~~e-l~-------~ 65 (637)
|.|...|||+|||||++|+++|+.||++|++|+|+|++....|..+.+ ..+||... -.++++ +. .
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~ 80 (508)
T PRK12266 1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRM 80 (508)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHh
Confidence 777778999999999999999999999999999999973222222111 11233211 011111 10 0
Q ss_pred hccH---------------------H-HHHHhhcC----CeE-eeeccc---cCch--------hhhhhhccCHHHHHHH
Q psy9395 66 MGGI---------------------M-AIATDKSG----IQF-RILNSS---KGAA--------VRATRAQVDRILYKQA 107 (637)
Q Consensus 66 ~gg~---------------------~-~~~~~~~g----i~~-~~l~~~---~gp~--------~~~~~~~~d~~~~~~~ 107 (637)
.+.. . ..+.+..+ +.- +.+... ..|. +.....++|+..+...
T Consensus 81 ~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~ 160 (508)
T PRK12266 81 APHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVL 160 (508)
T ss_pred CCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHH
Confidence 0000 0 00111101 000 000000 0011 1112235677777667
Q ss_pred HHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec---c--eEEEeceEEEecccc
Q psy9395 108 IRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI---G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 108 l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~---g--~~i~a~~VIlAtG~~ 158 (637)
+...+.+ .|++++ +++|+++..+++. ++|.+.+ | ..++|+.||.|||.|
T Consensus 161 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 161 NARDAAE-RGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHHHHH-cCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 7666666 578885 7899999876654 5666653 4 479999999999998
No 117
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.07 E-value=2.8e-09 Score=114.96 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=92.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCC-------CCccc-h-------hhHHHHHHH-hc--
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPS-------IGGIG-K-------SHLVKEIDA-MG-- 67 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s-------~gg~~-~-------~~l~~el~~-~g-- 67 (637)
+|||+|||||++|+++|++|+++|++|+|+|+.....+..+++.. .+... . ..+++++.. .+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~ 82 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGEP 82 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCCc
Confidence 389999999999999999999999999999997322111222111 11000 0 112222211 00
Q ss_pred -----c----------H---HHHHHhhcCCeEeeecc----ccCchh---------hhh-hhccCHHHHHHHHHHHHHhc
Q psy9395 68 -----G----------I---MAIATDKSGIQFRILNS----SKGAAV---------RAT-RAQVDRILYKQAIRFYLENQ 115 (637)
Q Consensus 68 -----g----------~---~~~~~~~~gi~~~~l~~----~~gp~~---------~~~-~~~~d~~~~~~~l~~~l~~~ 115 (637)
+ . ........|+..+.++. ...|.+ +.+ ...+++..+...+.+.+.+
T Consensus 83 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~- 161 (376)
T PRK11259 83 LFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLARE- 161 (376)
T ss_pred cEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH-
Confidence 0 0 11223345655555442 122211 111 1256777777777777776
Q ss_pred CCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 116 LNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 116 ~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.+++++ +++|+++..+++. +.|.+.+| .+.||.||+|+|.|
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDG-VTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred CCCEEECCCEEEEEEeeCCe-EEEEeCCC-EEEeeEEEEecCcc
Confidence 688885 8899999876664 45777776 79999999999997
No 118
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.06 E-value=3.4e-09 Score=115.26 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=90.7
Q ss_pred ccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcccccCCCCc----c--chhh-----------HHHHH-HHh
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQMSCNPSIGG----I--GKSH-----------LVKEI-DAM 66 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~~cn~s~gg----~--~~~~-----------l~~el-~~~ 66 (637)
|||+|||||.+|+++|++|+++ |++|+|+|++.. .+......+.|. . ..+. ++.++ +.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~-~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG-PARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc-ccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999 999999999732 222111111110 0 0011 11111 111
Q ss_pred c------c---------H------HHHHHhhcCCeEeeecc----ccCch------hhhh-hhccCHHHHHHHHHHHHHh
Q psy9395 67 G------G---------I------MAIATDKSGIQFRILNS----SKGAA------VRAT-RAQVDRILYKQAIRFYLEN 114 (637)
Q Consensus 67 g------g---------~------~~~~~~~~gi~~~~l~~----~~gp~------~~~~-~~~~d~~~~~~~l~~~l~~ 114 (637)
+ | . ........|+.++.++. ...|. ++.+ ..+++...+.+.+.+.+++
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~ 161 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence 0 0 0 00122234454444432 11221 1111 2356788889999988887
Q ss_pred cCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 115 QLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 115 ~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.|++++ +++|.++..+++.+ .|.+.+| ++.||.||+|+|.|
T Consensus 162 -~Gv~i~~~~~V~~i~~~~~~~-~V~~~~g-~i~ad~vV~A~G~~ 203 (393)
T PRK11728 162 -RGGEIRLGAEVTALDEHANGV-VVRTTQG-EYEARTLINCAGLM 203 (393)
T ss_pred -CCCEEEcCCEEEEEEecCCeE-EEEECCC-EEEeCEEEECCCcc
Confidence 677775 78999997766654 5777666 79999999999997
No 119
>PRK12831 putative oxidoreductase; Provisional
Probab=99.06 E-value=3.5e-09 Score=117.45 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=32.3
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
+..||+|||||+||++||+.|++.|++|+|+|+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 34799999999999999999999999999999863
No 120
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.04 E-value=6.1e-09 Score=124.94 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=44.1
Q ss_pred cCccccccCCCCEEEEEee-cCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc
Q psy9395 354 LKSSLETKQIHGLFFAGQI-NGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQ 408 (637)
Q Consensus 354 l~~tlesk~v~gLf~aGei-~G~~Gy~eA~a~G~~AG~naa~~~~~~~~~~~~r~~ 408 (637)
++.+++|. +||+|++||+ .|.....+|.++|..||.++..++.+..+...++.+
T Consensus 712 v~~~~~Ts-~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~~~~~~~ 766 (1006)
T PRK12775 712 LESTQSTN-LPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGKKWPITAEE 766 (1006)
T ss_pred cccCcCCC-CCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccc
Confidence 44577775 9999999999 555556699999999999999999888776666655
No 121
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.03 E-value=4.9e-09 Score=119.38 Aligned_cols=38 Identities=39% Similarity=0.630 Sum_probs=34.5
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCC
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNID 40 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~ 40 (637)
++.++||+|||+|.||++||+.|++.|++|+|||+...
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 44569999999999999999999999999999999743
No 122
>PRK07045 putative monooxygenase; Reviewed
Probab=99.03 E-value=1.5e-09 Score=117.72 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=89.0
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-hhhHHHHHHHhccHHHHHHhhc-----C
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-KSHLVKEIDAMGGIMAIATDKS-----G 78 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-~~~l~~el~~~gg~~~~~~~~~-----g 78 (637)
..+||+|||||+||+++|+.|++.|.+|+|+|+.+... . ..++.. ...-.+-++.+|- .....+.. .
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~-~-----~~~~~~l~~~~~~~L~~lGl-~~~~~~~~~~~~~~ 76 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNR-A-----QNGADLLKPSGIGVVRAMGL-LDDVFAAGGLRRDA 76 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCccc-C-----CCcccccCccHHHHHHHcCC-HHHHHhcccccccc
Confidence 45899999999999999999999999999999974321 1 011100 0011122233321 11111110 1
Q ss_pred CeEee----eccccCchh--hhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCe-EEEEEEecceEEEece
Q psy9395 79 IQFRI----LNSSKGAAV--RATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNK-ILGVVTKIGIKFFSKT 150 (637)
Q Consensus 79 i~~~~----l~~~~gp~~--~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~-v~gV~~~~g~~i~a~~ 150 (637)
+.+.. +.....+.. .+....+.+..+.+.|.+.+...+++++ ++++|+++..+++. ++.|.+.+|.++.+|.
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~ 156 (388)
T PRK07045 77 MRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTV 156 (388)
T ss_pred eEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCE
Confidence 11100 000000000 1111235666788888888876688999 59999999875443 4567788888999999
Q ss_pred EEEecccc
Q psy9395 151 VILTTGTF 158 (637)
Q Consensus 151 VIlAtG~~ 158 (637)
||.|+|..
T Consensus 157 vIgADG~~ 164 (388)
T PRK07045 157 LVGADGAR 164 (388)
T ss_pred EEECCCCC
Confidence 99999986
No 123
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.03 E-value=6.9e-09 Score=118.25 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec--c-eEEEec-eEEEecccccC
Q psy9395 104 YKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI--G-IKFFSK-TVILTTGTFLN 160 (637)
Q Consensus 104 ~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~--g-~~i~a~-~VIlAtG~~~~ 160 (637)
+...+.+.+++ .+++++ ++.|+++..++++++||.+.+ + ..+.++ .||+|||+|.+
T Consensus 216 l~~~L~~~~~~-~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 216 LAARLAKSALD-LGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHh-CCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 44556666666 688885 999999998888999988754 3 257885 79999999863
No 124
>PRK09126 hypothetical protein; Provisional
Probab=99.03 E-value=2.7e-09 Score=115.82 Aligned_cols=146 Identities=21% Similarity=0.234 Sum_probs=85.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCc--cc-hhhHHHHHHHhccHHHHHHhhcCC----
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGG--IG-KSHLVKEIDAMGGIMAIATDKSGI---- 79 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg--~~-~~~l~~el~~~gg~~~~~~~~~gi---- 79 (637)
|||+|||||++|+++|+.|++.|.+|+|+|+...... +.+...| ++ .....+.++.+|- ...+.+ .++
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~~~~~~g~~i~l~~~~~~~L~~lGl-~~~~~~-~~~~~~~ 78 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAAL---ADPAFDGREIALTHASREILQRLGA-WDRIPE-DEISPLR 78 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccc---cCCCCchhHHHhhHHHHHHHHHCCC-hhhhcc-ccCCccc
Confidence 8999999999999999999999999999999743110 0011111 10 0122333444431 111111 110
Q ss_pred eEeeecccc-----Cch----hhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEec
Q psy9395 80 QFRILNSSK-----GAA----VRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSK 149 (637)
Q Consensus 80 ~~~~l~~~~-----gp~----~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~ 149 (637)
.+...+... .+. .......+.+..+.+.+.+.+.+..++++. +++|+++..+++. +.|.+.+|.++.||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~ 157 (392)
T PRK09126 79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTLANGRRLTAR 157 (392)
T ss_pred eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeC
Confidence 011111100 000 000111234455666777766655788985 8899999766664 45777788899999
Q ss_pred eEEEecccc
Q psy9395 150 TVILTTGTF 158 (637)
Q Consensus 150 ~VIlAtG~~ 158 (637)
.||.|+|..
T Consensus 158 ~vI~AdG~~ 166 (392)
T PRK09126 158 LLVAADSRF 166 (392)
T ss_pred EEEEeCCCC
Confidence 999999985
No 125
>KOG1335|consensus
Probab=99.03 E-value=1.2e-09 Score=112.26 Aligned_cols=139 Identities=25% Similarity=0.319 Sum_probs=80.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc---ccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ---MSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR 82 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~---~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~ 82 (637)
+|||+|||||+.|-.||+.+|+.|++++.+|+.....|. ..|-||..-....++++++.. ..+...|++..
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~------~~~~~rGi~vs 112 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQH------EDFASRGIDVS 112 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhh------hHHHhcCcccc
Confidence 599999999999999999999999999999997444443 346676654444555555432 13445666542
Q ss_pred eeccccCchhhhhhhccCH--HHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc--eEEEeceEEEecccc
Q psy9395 83 ILNSSKGAAVRATRAQVDR--ILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 83 ~l~~~~gp~~~~~~~~~d~--~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~ 158 (637)
... -.+.....+-+. ..+..-+...+++ .+++++.....-+ +..++ .+...|| .++.++.+|+|||+-
T Consensus 113 ~~~----~dl~~~~~~k~~~vk~Lt~gi~~lfkk-nkV~~~kG~gsf~--~p~~V-~v~k~dg~~~ii~aKnIiiATGSe 184 (506)
T KOG1335|consen 113 SVS----LDLQAMMKAKDNAVKQLTGGIENLFKK-NKVTYVKGFGSFL--DPNKV-SVKKIDGEDQIIKAKNIIIATGSE 184 (506)
T ss_pred cee----cCHHHHHHHHHHHHHHHhhHHHHHhhh-cCeEEEeeeEeec--CCceE-EEeccCCCceEEeeeeEEEEeCCc
Confidence 110 000011111111 1222333344443 5666654433222 22222 2444444 689999999999983
No 126
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.03 E-value=2e-09 Score=117.12 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=90.5
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ 80 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~ 80 (637)
|.+. .||+|||||++|+++|+.|++.|.+|+|+|+.+ ..+...+..+.. ....+-++.+|-.- . ....+..
T Consensus 1 ~~~~--~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~-~~~~~g~gi~l~----~~~~~~l~~lg~~~-~-~~~~~~~ 71 (396)
T PRK08163 1 MTKV--TPVLIVGGGIGGLAAALALARQGIKVKLLEQAA-EIGEIGAGIQLG----PNAFSALDALGVGE-A-ARQRAVF 71 (396)
T ss_pred CCCC--CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc-ccccccceeeeC----chHHHHHHHcCChH-H-HHhhccC
Confidence 5544 799999999999999999999999999999974 222211111111 12223334443210 0 1111110
Q ss_pred ---EeeeccccC------c--h-h---hh-hhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc
Q psy9395 81 ---FRILNSSKG------A--A-V---RA-TRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG 143 (637)
Q Consensus 81 ---~~~l~~~~g------p--~-~---~~-~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g 143 (637)
+...+...+ + . . .+ +...+.+..+.+.|.+.+.+.++++++ ++.|+++..+++.+ .+.+.+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v-~v~~~~g 150 (396)
T PRK08163 72 TDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGV-TVFDQQG 150 (396)
T ss_pred CcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCce-EEEEcCC
Confidence 111110000 0 0 0 00 112356777888888888776778885 88999997666554 4667778
Q ss_pred eEEEeceEEEecccc
Q psy9395 144 IKFFSKTVILTTGTF 158 (637)
Q Consensus 144 ~~i~a~~VIlAtG~~ 158 (637)
.++.||.||.|+|.+
T Consensus 151 ~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 151 NRWTGDALIGCDGVK 165 (396)
T ss_pred CEEecCEEEECCCcC
Confidence 889999999999996
No 127
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.02 E-value=4.8e-09 Score=114.49 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=86.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCccc--ccCCCCccc-hhhHHHHHHHhccHHHHHHhhcCC---e
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMS--CNPSIGGIG-KSHLVKEIDAMGGIMAIATDKSGI---Q 80 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~--cn~s~gg~~-~~~l~~el~~~gg~~~~~~~~~gi---~ 80 (637)
|||+|||||++|+++|+.|++.|.+|+|+|+.+...+... +.....+.+ ...-.+-++.+|- +..+.+.... .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl-~~~l~~~~~~~~~~ 81 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGA-WDGIAARRASPYSE 81 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCCh-hhhhhHhhCcccee
Confidence 8999999999999999999999999999999742111110 000000111 1112222333331 1111111010 1
Q ss_pred EeeeccccC-----ch--h--hhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEece
Q psy9395 81 FRILNSSKG-----AA--V--RATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKT 150 (637)
Q Consensus 81 ~~~l~~~~g-----p~--~--~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~ 150 (637)
+...+.... .. . ......+++..+.+.+.+.+.+ .+++++ +++|+++..+++.+ .|.+.+|.+++||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~v-~v~~~~g~~~~a~~ 159 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHD-SDIGLLANARLEQMRRSGDDW-LLTLADGRQLRAPL 159 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhc-CCCEEEcCCEEEEEEEcCCeE-EEEECCCCEEEeCE
Confidence 111111000 00 0 0111235566777788887776 578885 88999997666654 47777888899999
Q ss_pred EEEecccc
Q psy9395 151 VILTTGTF 158 (637)
Q Consensus 151 VIlAtG~~ 158 (637)
||.|+|.+
T Consensus 160 vVgAdG~~ 167 (405)
T PRK05714 160 VVAADGAN 167 (405)
T ss_pred EEEecCCC
Confidence 99999997
No 128
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.02 E-value=3.7e-09 Score=115.69 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 98 QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
++++..+...+.+.+.+ .|++++ +++|+++..+++++.+|.+.++ ++.||.||+|+|.|
T Consensus 197 ~~~p~~~~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~ 256 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQ-LGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSY 256 (416)
T ss_pred cCCHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcc
Confidence 56777888888888877 678885 7899999877777777777655 79999999999997
No 129
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.02 E-value=2.1e-09 Score=117.65 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=84.7
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeE--
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQF-- 81 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~-- 81 (637)
+..|||+|||||+||+++|+.|++.|++|+|+|+.+.. ....+.... .+. ..-.+-++.+| ++....+ .+..+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~-~~~~~g~~~-~l~-~~~~~~L~~lG-l~~~l~~-~~~~~~~ 90 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE-AAAAKGQAY-ALS-LLSARIFEGIG-VWEKILP-QIGKFRQ 90 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc-ccCCCCcEE-Eec-hHHHHHHHHCC-hhhhhHh-hcCCccE
Confidence 34699999999999999999999999999999997432 111010000 011 11222333333 1111111 11111
Q ss_pred -eeeccc-----cCch--h--hhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec-c--eEEE
Q psy9395 82 -RILNSS-----KGAA--V--RATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI-G--IKFF 147 (637)
Q Consensus 82 -~~l~~~-----~gp~--~--~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~-g--~~i~ 147 (637)
...+.. ..+. . ........+..+.+.|.+.+.+.+++++. +++|+++..+++.+ .|.+.+ + .+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~-~v~~~~~~~~~~i~ 169 (415)
T PRK07364 91 IRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA-TVTLEIEGKQQTLQ 169 (415)
T ss_pred EEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee-EEEEccCCcceEEe
Confidence 010100 0000 0 00011123345677777777776789985 89999997666654 355543 2 4799
Q ss_pred eceEEEecccc
Q psy9395 148 SKTVILTTGTF 158 (637)
Q Consensus 148 a~~VIlAtG~~ 158 (637)
||.||.|+|.+
T Consensus 170 adlvIgADG~~ 180 (415)
T PRK07364 170 SKLVVAADGAR 180 (415)
T ss_pred eeEEEEeCCCC
Confidence 99999999986
No 130
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.02 E-value=6.3e-09 Score=113.02 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=86.4
Q ss_pred ccEEEECcchHHHHHHHHHhhC---CCcEEEEccCCCCCCccccc-CCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM---GQKTLLLSHNIDTIGQMSCN-PSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR 82 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~---G~~V~LiE~~~~~~G~~~cn-~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~ 82 (637)
+||+|||||+||+++|+.|++. |.+|+|+|+..+......+. ....++.. .-.+.++.+|- +..+.+ .+....
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lgl-~~~~~~-~~~~~~ 80 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAA-GTCQQLARLGV-WQALAD-CATPIT 80 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccH-HHHHHHHHCCC-hhhhHh-hcCCcc
Confidence 8999999999999999999998 99999999952211000000 00011111 11223333331 111111 111110
Q ss_pred ---eecc-ccC----c----hhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEec
Q psy9395 83 ---ILNS-SKG----A----AVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSK 149 (637)
Q Consensus 83 ---~l~~-~~g----p----~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~ 149 (637)
..+. ..+ . ........+++..+.+.+.+.+.+.+++++. +++|+++..+++.+ .|.+.+|..+.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~a~ 159 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSV-RVTLDDGETLTGR 159 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeE-EEEECCCCEEEeC
Confidence 0000 000 0 0001112355566777788877776788885 88999997666654 4777778789999
Q ss_pred eEEEecccc
Q psy9395 150 TVILTTGTF 158 (637)
Q Consensus 150 ~VIlAtG~~ 158 (637)
.||.|+|.+
T Consensus 160 ~vI~AdG~~ 168 (395)
T PRK05732 160 LLVAADGSH 168 (395)
T ss_pred EEEEecCCC
Confidence 999999986
No 131
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.02 E-value=5.3e-09 Score=112.98 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=88.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch-hhHHHHHHHhccHHHHHHhhcCCe---E
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK-SHLVKEIDAMGGIMAIATDKSGIQ---F 81 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~-~~l~~el~~~gg~~~~~~~~~gi~---~ 81 (637)
++||+|||||++|+++|+.|++.|++|+|+|+....... ......+.+. ..-.+-++.+|-. .... ..+.. +
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~--~~~~~r~~~l~~~~~~~L~~lGl~-~~l~-~~~~~~~~~ 76 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPE--FFKDIRTTALTPHSKNFLFSIDIW-EELE-KFVAEMQDI 76 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCc--cCcCceEEEeCHHHHHHHHHCCcH-HHHH-hhcCCCcEE
Confidence 479999999999999999999999999999986311111 0011111111 1122233333311 1111 11111 1
Q ss_pred eeeccccC-----c--hhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEE
Q psy9395 82 RILNSSKG-----A--AVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVIL 153 (637)
Q Consensus 82 ~~l~~~~g-----p--~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIl 153 (637)
...+.... + ........+.+..+.+.|.+.+.+.++++++ +++|+++..+++.+ .|.+.++ +++||.||.
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v-~v~~~~~-~~~adlvIg 154 (374)
T PRK06617 77 YVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYS-IIKFDDK-QIKCNLLII 154 (374)
T ss_pred EEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeE-EEEEcCC-EEeeCEEEE
Confidence 11111000 0 0001123467788999999988887778885 88999997766654 4666666 899999999
Q ss_pred ecccc
Q psy9395 154 TTGTF 158 (637)
Q Consensus 154 AtG~~ 158 (637)
|+|..
T Consensus 155 ADG~~ 159 (374)
T PRK06617 155 CDGAN 159 (374)
T ss_pred eCCCC
Confidence 99996
No 132
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.02 E-value=4.7e-09 Score=114.63 Aligned_cols=148 Identities=13% Similarity=0.180 Sum_probs=86.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCC--CCcccccCCCCccch-hhHHHHHHHhccHHHHHHhhcCCe--
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDT--IGQMSCNPSIGGIGK-SHLVKEIDAMGGIMAIATDKSGIQ-- 80 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~--~G~~~cn~s~gg~~~-~~l~~el~~~gg~~~~~~~~~gi~-- 80 (637)
.+||+|||||++|+++|+.|++.|.+|+|+|+.... .+.. +...+.+. ..-.+-++.+|- +....+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~---~~~r~~~l~~~~~~~L~~lGl-~~~l~~~~~~~~~ 79 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNEL---PDVRVSALSRSSEHILRNLGA-WQGIEARRAAPYI 79 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCC---CCcceecccHHHHHHHHhCCc-hhhhhhhhCCccc
Confidence 489999999999999999999999999999985211 1110 00111110 012223333331 11111111110
Q ss_pred -Eeeeccc-cC----ch----hhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEec
Q psy9395 81 -FRILNSS-KG----AA----VRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSK 149 (637)
Q Consensus 81 -~~~l~~~-~g----p~----~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~ 149 (637)
++..+.. .+ +. .......+.+..+...+.+.+.+.+++++. +++|+++..+++.+ .|.+.+|++++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~-~v~~~~g~~~~a~ 158 (405)
T PRK08850 80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEA-WLTLDNGQALTAK 158 (405)
T ss_pred EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeE-EEEECCCCEEEeC
Confidence 1111110 00 00 000111234556677777777776789984 88999997766644 5777888899999
Q ss_pred eEEEecccc
Q psy9395 150 TVILTTGTF 158 (637)
Q Consensus 150 ~VIlAtG~~ 158 (637)
.||.|+|..
T Consensus 159 lvIgADG~~ 167 (405)
T PRK08850 159 LVVGADGAN 167 (405)
T ss_pred EEEEeCCCC
Confidence 999999985
No 133
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.02 E-value=2.6e-09 Score=115.96 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=85.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
|||+|||||+||++||+.||+.|++|+|+|+.. .....|.. ++.. ...+++......... ...+..+..-++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~--~~~~~cg~---~i~~-~~l~~l~i~~~~~~~--~~~~~~~~~~~~ 72 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL--SNIKPCGG---AIPP-CLIEEFDIPDSLIDR--RVTQMRMISPSR 72 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC--CCcCcCcC---CcCH-hhhhhcCCchHHHhh--hcceeEEEcCCC
Confidence 799999999999999999999999999999962 12234543 2222 122222111111110 011121111110
Q ss_pred c----cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEec------c--eEEEeceEEEe
Q psy9395 87 S----KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKI------G--IKFFSKTVILT 154 (637)
Q Consensus 87 ~----~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~------g--~~i~a~~VIlA 154 (637)
. ..|.....-..+++..+.+.|.+.+.+ .|++++.+.|+++..+++.+ .|.+.+ | .+++|+.||.|
T Consensus 73 ~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~-~G~~v~~~~v~~v~~~~~~~-~v~~~~~~~~~~~~~~~i~a~~VI~A 150 (388)
T TIGR02023 73 VPIKVTIPSEDGYVGMVRREVFDSYLRERAQK-AGAELIHGLFLKLERDRDGV-TLTYRTPKKGAGGEKGSVEADVVIGA 150 (388)
T ss_pred ceeeeccCCCCCceEeeeHHHHHHHHHHHHHh-CCCEEEeeEEEEEEEcCCeE-EEEEEeccccCCCcceEEEeCEEEEC
Confidence 0 001000111147888898899888877 68888877899987766644 455442 2 47999999999
Q ss_pred cccc
Q psy9395 155 TGTF 158 (637)
Q Consensus 155 tG~~ 158 (637)
+|..
T Consensus 151 dG~~ 154 (388)
T TIGR02023 151 DGAN 154 (388)
T ss_pred CCCC
Confidence 9985
No 134
>PRK08013 oxidoreductase; Provisional
Probab=99.01 E-value=4.6e-09 Score=114.52 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=89.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-hhhHHHHHHHhccHHHHHHhh-----cCCe
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-KSHLVKEIDAMGGIMAIATDK-----SGIQ 80 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-~~~l~~el~~~gg~~~~~~~~-----~gi~ 80 (637)
|||+|||||++|+++|+.|++.|++|+|+|+.+.......+.....+.+ ...-.+-++.+|- ....... .++.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl-~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGV-WQDILARRASCYHGME 82 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCC-chhhhhhcCccccEEE
Confidence 8999999999999999999999999999999743211000000111110 0111223333331 1111111 1111
Q ss_pred Eeeecc---ccCc----hhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEE
Q psy9395 81 FRILNS---SKGA----AVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVI 152 (637)
Q Consensus 81 ~~~l~~---~~gp----~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VI 152 (637)
+..-+. .... ........+++..+.+.|.+.+.+.+++++. +++|+++..+++.+ .|.+.+|.+++||.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v-~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEA-FLTLKDGSMLTARLVV 161 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeE-EEEEcCCCEEEeeEEE
Confidence 110000 0000 0001112466778888888888876789985 88999997666544 4667788899999999
Q ss_pred Eecccc
Q psy9395 153 LTTGTF 158 (637)
Q Consensus 153 lAtG~~ 158 (637)
.|+|..
T Consensus 162 gADG~~ 167 (400)
T PRK08013 162 GADGAN 167 (400)
T ss_pred EeCCCC
Confidence 999986
No 135
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.01 E-value=5.4e-09 Score=114.18 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=94.1
Q ss_pred CcccEEEECcchHHHHHHHHHhhC-CC-cEEEEccCCCCCCcccccCCCCcc-------ch-------hhHHHHHHH-hc
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARM-GQ-KTLLLSHNIDTIGQMSCNPSIGGI-------GK-------SHLVKEIDA-MG 67 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~-G~-~V~LiE~~~~~~G~~~cn~s~gg~-------~~-------~~l~~el~~-~g 67 (637)
..|||+|||||.+|+++|++|+++ |. +|+|+|+.. ++...+..+.+.+ .. ..+++++.. ++
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~--~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~ 106 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW--LGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLN 106 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc--ccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhC
Confidence 458999999999999999999995 95 999999963 3322221111111 00 122332221 11
Q ss_pred --------c-H--------------HHHHHhhcCCeEeeecc----ccCchhh--------------hhh-hccCHHHHH
Q psy9395 68 --------G-I--------------MAIATDKSGIQFRILNS----SKGAAVR--------------ATR-AQVDRILYK 105 (637)
Q Consensus 68 --------g-~--------------~~~~~~~~gi~~~~l~~----~~gp~~~--------------~~~-~~~d~~~~~ 105 (637)
+ + ........|+..+.++. ...|.+. .+. ..+++..+.
T Consensus 107 ~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~ 186 (407)
T TIGR01373 107 YNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVA 186 (407)
T ss_pred CCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHH
Confidence 0 0 01123345777666653 2233211 111 246677777
Q ss_pred HHHHHHHHhcCCeEEE-cceeEEEEEe-CCeEEEEEEecceEEEeceEEEecccc
Q psy9395 106 QAIRFYLENQLNLYLF-QEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 106 ~~l~~~l~~~~gv~i~-~~~V~~i~~~-~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
..+.+.+.+ .|++++ +++|+++... ++++.+|.+.+| .+.|+.||+|+|+|
T Consensus 187 ~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 187 WGYARGADR-RGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHH-CCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 778777777 678886 7899999754 566777888777 69999999999997
No 136
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.01 E-value=5.5e-09 Score=110.89 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=85.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhc---CC---
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKS---GI--- 79 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~---gi--- 79 (637)
+|||+|||||++|+++|+.|++.|++|+|+|+..... ...|.. ++ .....+.++.+|- ...+.+.. .+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~-~~~~~~---~l-~~~~~~~l~~lgl-~~~~~~~~~~~~~~~~ 74 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR-PKGRGI---GL-SPNSLRILQRLGL-LDEILARGSPHEVMRI 74 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC-CSSSSE---EE-EHHHHHHHHHTTE-HHHHHHHSEEECEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccccc-cccccc---cc-ccccccccccccc-hhhhhhhcccccceee
Confidence 3899999999999999999999999999999974322 111111 11 1122334444432 11222111 10
Q ss_pred eEeee---------c---cccC--chhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEe--c
Q psy9395 80 QFRIL---------N---SSKG--AAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTK--I 142 (637)
Q Consensus 80 ~~~~l---------~---~~~g--p~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~--~ 142 (637)
.+... . .... .........+++..+.+.|.+.+++.+ +++ ++++|+++..+++++..+... +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~d~~~~~~~~~~~~~ 153 (356)
T PF01494_consen 75 FFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQDDDGVTVVVRDGED 153 (356)
T ss_dssp EEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEEETTEEEEEEEETCT
T ss_pred EeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccccccccccccccccC
Confidence 11110 0 0000 000011224667788899999988755 888 589999998887765543332 2
Q ss_pred c--eEEEeceEEEecccc
Q psy9395 143 G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 143 g--~~i~a~~VIlAtG~~ 158 (637)
| .+++||.||.|+|..
T Consensus 154 g~~~~i~adlvVgADG~~ 171 (356)
T PF01494_consen 154 GEEETIEADLVVGADGAH 171 (356)
T ss_dssp CEEEEEEESEEEE-SGTT
T ss_pred CceeEEEEeeeecccCcc
Confidence 3 479999999999995
No 137
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.01 E-value=9.6e-10 Score=107.86 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=71.7
Q ss_pred EEECcchHHHHHHHHHhhCCCc-EEEEccCCCCCCcccccCCCCcc-chhhHHHHHHHhccHHHHHHhhcCCe-Eeeecc
Q psy9395 10 IVVGGGHAGTEAALVSARMGQK-TLLLSHNIDTIGQMSCNPSIGGI-GKSHLVKEIDAMGGIMAIATDKSGIQ-FRILNS 86 (637)
Q Consensus 10 iVIGgG~AGl~AA~~lA~~G~~-V~LiE~~~~~~G~~~cn~s~gg~-~~~~l~~el~~~gg~~~~~~~~~gi~-~~~l~~ 86 (637)
+|||||++|+++|+.|.+.|.+ |+|+|++...+|...-....... ...... ...++. +..+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFS--------------SDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCT--------------GGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCcccc--------------ccccCCccccccc
Confidence 6999999999999999999999 99999984433332100000000 000000 000000 000000
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
...|.............+.+.++..+++ .++.+ ++++|+++..++++ +.|.+.++.+++|+.||+|||.+
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAER-FGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHH-TTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---SS
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhh-cCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeecc
Confidence 0001100111224456677888888887 56777 58999999988877 67888888899999999999985
No 138
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.00 E-value=3.4e-09 Score=118.90 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=89.1
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccC--CCCccch-----hhHHHH-H---HH----
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNP--SIGGIGK-----SHLVKE-I---DA---- 65 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~--s~gg~~~-----~~l~~e-l---~~---- 65 (637)
|+|..+|||+|||||++|+++|+.||++|++|+|+|++....|..+.+. -++|... -.++++ + ..
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ 80 (502)
T PRK13369 1 MAEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAA 80 (502)
T ss_pred CCCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 7777789999999999999999999999999999999732222211110 0111100 011111 0 00
Q ss_pred hcc-----------------HHH-----HHHhhcC----Ce-Eeeeccc---c-Cc-------hhhhhhhccCHHHHHHH
Q psy9395 66 MGG-----------------IMA-----IATDKSG----IQ-FRILNSS---K-GA-------AVRATRAQVDRILYKQA 107 (637)
Q Consensus 66 ~gg-----------------~~~-----~~~~~~g----i~-~~~l~~~---~-gp-------~~~~~~~~~d~~~~~~~ 107 (637)
.++ .+. .+.+..+ +. .+.++.. . .| ++.....++|+..+...
T Consensus 81 ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~ 160 (502)
T PRK13369 81 APHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVL 160 (502)
T ss_pred CCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHH
Confidence 000 000 0111111 10 1111110 0 01 01111235677777777
Q ss_pred HHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc----eEEEeceEEEecccc
Q psy9395 108 IRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG----IKFFSKTVILTTGTF 158 (637)
Q Consensus 108 l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g----~~i~a~~VIlAtG~~ 158 (637)
+...+.+ .|+.++ .++|+++..+++ .++|.+.++ .+++|+.||.|||.|
T Consensus 161 l~~~a~~-~Ga~i~~~~~V~~i~~~~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 161 NALDAAE-RGATILTRTRCVSARREGG-LWRVETRDADGETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHH-CCCEEecCcEEEEEEEcCC-EEEEEEEeCCCCEEEEEecEEEECCCcc
Confidence 7777776 677775 779999987655 456766554 469999999999998
No 139
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.00 E-value=6.4e-09 Score=112.48 Aligned_cols=146 Identities=21% Similarity=0.225 Sum_probs=88.9
Q ss_pred cEEEECcchHHHHHHHHHhhCC-CcEEEEccCCCCCCccccc-CCCCccchhhHHHHHHHhccHHHHHHhhcCCe---Ee
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG-QKTLLLSHNIDTIGQMSCN-PSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ---FR 82 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~~~~~G~~~cn-~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~---~~ 82 (637)
||+|||||+||+++|+.|++.| .+|+|+|+..... ...|. +...++.. ...+.++.+|-. ..+. ..+.. +.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~-~~~~~~~~~~~l~~-~~~~~l~~lgl~-~~~~-~~~~~~~~~~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSA-AQPGFDARSLALSY-GSKQILEKLGLW-PKLA-PFATPILDIH 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccc-cCCCCCCeeEeccH-HHHHHHHHCCCh-hhhH-hhcCccceEE
Confidence 8999999999999999999999 9999999974221 11110 00011111 112333444321 1111 11111 11
Q ss_pred eecc-ccCc------hh--hhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEE
Q psy9395 83 ILNS-SKGA------AV--RATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVI 152 (637)
Q Consensus 83 ~l~~-~~gp------~~--~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VI 152 (637)
.... ..+. .. ......+++..+.+.|.+.+.+.+|++++ +++|+++..+++.+ .|.+.+|.++.||.||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~ad~vV 155 (382)
T TIGR01984 77 VSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYV-RVTLDNGQQLRAKLLI 155 (382)
T ss_pred EEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeE-EEEECCCCEEEeeEEE
Confidence 1110 0000 00 01113467788899999888875689986 89999997666654 4677778889999999
Q ss_pred Eecccc
Q psy9395 153 LTTGTF 158 (637)
Q Consensus 153 lAtG~~ 158 (637)
.|+|.+
T Consensus 156 ~AdG~~ 161 (382)
T TIGR01984 156 AADGAN 161 (382)
T ss_pred EecCCC
Confidence 999986
No 140
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.99 E-value=1.2e-08 Score=116.37 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec--c-eEEEe-ceEEEecccccC
Q psy9395 103 LYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI--G-IKFFS-KTVILTTGTFLN 160 (637)
Q Consensus 103 ~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~--g-~~i~a-~~VIlAtG~~~~ 160 (637)
.+...|.+.+++ .|++++ ++.|++|..+++++++|...+ + ..++| +.||+|||+|.+
T Consensus 218 ~l~~~L~~~a~~-~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 218 ALVARLLKSAED-LGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHh-CCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 456677777777 688885 899999988888898887642 3 25889 999999999965
No 141
>PRK12839 hypothetical protein; Provisional
Probab=98.99 E-value=1.2e-08 Score=115.77 Aligned_cols=38 Identities=34% Similarity=0.565 Sum_probs=34.8
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCC
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNID 40 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~ 40 (637)
++.++||+|||+|.+|++||+.|++.|++|+|||++..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 55679999999999999999999999999999999743
No 142
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.99 E-value=1.2e-08 Score=121.41 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=31.9
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
..+|+|||||+||++||+.|++.|++|+|+|+..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 4689999999999999999999999999999973
No 143
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.98 E-value=4.5e-09 Score=115.94 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=85.1
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
.+|||+|||||+||++||+.||+.|++|+|+|+... ....|.... .. .+.+++........... .++.+..-
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~--~~k~cgg~i---~~-~~l~~lgl~~~~~~~~i--~~~~~~~p 109 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD--NAKPCGGAI---PL-CMVGEFDLPLDIIDRKV--TKMKMISP 109 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC--CCCCccccc---cH-hHHhhhcCcHHHHHHHh--hhheEecC
Confidence 359999999999999999999999999999999642 223454322 21 22222221111111100 11111110
Q ss_pred ccc--cCc-hh--hhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeC--CeEEEEEEec-------c--eEEEe
Q psy9395 85 NSS--KGA-AV--RATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKT--NKILGVVTKI-------G--IKFFS 148 (637)
Q Consensus 85 ~~~--~gp-~~--~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~--~~v~gV~~~~-------g--~~i~a 148 (637)
+.. ..+ .. ...-..+++..+.+.|.+.+.+ .|+++....++++..++ +..+.|.+.+ | .+++|
T Consensus 110 ~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~-~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a 188 (450)
T PLN00093 110 SNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQS-NGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEV 188 (450)
T ss_pred CceEEEecccCCCCCeEEEecHHHHHHHHHHHHHH-CCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEe
Confidence 000 000 00 0111247888999999988887 68888766788775422 2233344322 2 58999
Q ss_pred ceEEEecccc
Q psy9395 149 KTVILTTGTF 158 (637)
Q Consensus 149 ~~VIlAtG~~ 158 (637)
+.||.|+|..
T Consensus 189 ~~VIgADG~~ 198 (450)
T PLN00093 189 DAVIGADGAN 198 (450)
T ss_pred CEEEEcCCcc
Confidence 9999999985
No 144
>PRK07190 hypothetical protein; Provisional
Probab=98.98 E-value=9.6e-09 Score=114.60 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=87.1
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ 80 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~ 80 (637)
|+. ..+||+|||||++|+++|+.|++.|.+|+|||+.........|+. +.. ...+-++.+| +...+.+ .+..
T Consensus 1 m~~-~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~----l~~-~tle~L~~lG-l~~~l~~-~~~~ 72 (487)
T PRK07190 1 MST-QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADA----LNA-RTLQLLELVD-LFDELYP-LGKP 72 (487)
T ss_pred CCC-ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceE----eCH-HHHHHHHhcC-hHHHHHh-hCcc
Confidence 553 358999999999999999999999999999999743322222211 111 1111222222 1111111 1111
Q ss_pred Eee---------ec--cccC---chh-hhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecce
Q psy9395 81 FRI---------LN--SSKG---AAV-RATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGI 144 (637)
Q Consensus 81 ~~~---------l~--~~~g---p~~-~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~ 144 (637)
... +. ...+ +.. ......+....+...|.+.+.+ .|+++ ++++|+++..+++.+. +.+.+|.
T Consensus 73 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~-~Gv~v~~~~~v~~l~~~~~~v~-v~~~~g~ 150 (487)
T PRK07190 73 CNTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKE-AGAAVKRNTSVVNIELNQAGCL-TTLSNGE 150 (487)
T ss_pred ceeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCeeE-EEECCCc
Confidence 000 00 0000 000 0001124445677777777777 58888 5999999987776654 4556677
Q ss_pred EEEeceEEEecccc
Q psy9395 145 KFFSKTVILTTGTF 158 (637)
Q Consensus 145 ~i~a~~VIlAtG~~ 158 (637)
+++|+.||.|+|+.
T Consensus 151 ~v~a~~vVgADG~~ 164 (487)
T PRK07190 151 RIQSRYVIGADGSR 164 (487)
T ss_pred EEEeCEEEECCCCC
Confidence 99999999999985
No 145
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.98 E-value=6.6e-09 Score=112.26 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=88.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch-hhHHHHHHHhccHHHHHHhhcCCeE---ee
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK-SHLVKEIDAMGGIMAIATDKSGIQF---RI 83 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~-~~l~~el~~~gg~~~~~~~~~gi~~---~~ 83 (637)
||+|||||+||+++|+.|++.|.+|+|+|+... .+...|.....+.+. ....+.++.+|- ........+... ..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~-~~~~~~~~~~~~~~l~~~~~~~l~~lGl-~~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA-EAAATPGFDNRVSALSAASIRLLEKLGV-WDKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc-cccCCCCCCcceeecCHHHHHHHHHCCc-hhhhhhhcCCCceEEEE
Confidence 799999999999999999999999999999743 211111111111110 111223333331 111111011111 01
Q ss_pred eccc-c----Cch--h--hhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEE
Q psy9395 84 LNSS-K----GAA--V--RATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVIL 153 (637)
Q Consensus 84 l~~~-~----gp~--~--~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIl 153 (637)
.... . .+. . ......+++..+.+.|.+.+.+.++++++ +++|+++..+++.+ .+.+.+|.++.+|.||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHV-ELTLDDGQQLRARLLVG 157 (385)
T ss_pred EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCee-EEEECCCCEEEeeEEEE
Confidence 1100 0 000 0 00112356677888888888876668885 88999998766654 47777888899999999
Q ss_pred ecccc
Q psy9395 154 TTGTF 158 (637)
Q Consensus 154 AtG~~ 158 (637)
|+|.+
T Consensus 158 adG~~ 162 (385)
T TIGR01988 158 ADGAN 162 (385)
T ss_pred eCCCC
Confidence 99985
No 146
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.98 E-value=6.6e-09 Score=111.74 Aligned_cols=145 Identities=20% Similarity=0.278 Sum_probs=87.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCc-c-----c----h------hhHHHHHHH-hc--
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGG-I-----G----K------SHLVKEIDA-MG-- 67 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg-~-----~----~------~~l~~el~~-~g-- 67 (637)
|||+|||||.+|+++|++|++.|++|+|+|+... +... +..+.| + . . ..+++++.. ++
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~--~~ga-S~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 77 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR--AQGA-SVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIW 77 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC--CCCc-ccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCC
Confidence 6999999999999999999999999999999632 2211 111111 1 0 0 012222211 10
Q ss_pred -----c-----------HHHHH---HhhcCCeEeeecc----ccCch---------hhhh-hhccCHHHHHHHHHHHHHh
Q psy9395 68 -----G-----------IMAIA---TDKSGIQFRILNS----SKGAA---------VRAT-RAQVDRILYKQAIRFYLEN 114 (637)
Q Consensus 68 -----g-----------~~~~~---~~~~gi~~~~l~~----~~gp~---------~~~~-~~~~d~~~~~~~l~~~l~~ 114 (637)
. .+..+ ....++.++.+.. ...|. ++.+ ..++|+..+...+.+.+.+
T Consensus 78 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~ 157 (365)
T TIGR03364 78 VRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAE 157 (365)
T ss_pred EEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHh
Confidence 0 00011 1123444555442 11221 1121 2357888888888888776
Q ss_pred cCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 115 QLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 115 ~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
..|++++ +++|+++.. + .|.+.+| .++|+.||+|||.|.+
T Consensus 158 ~~Gv~i~~~t~V~~i~~--~---~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 158 QHGVEFHWNTAVTSVET--G---TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred cCCCEEEeCCeEEEEec--C---eEEeCCC-cEEeCEEEECCCCChh
Confidence 4588886 789999853 2 4667666 5789999999999843
No 147
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.98 E-value=3.8e-09 Score=115.10 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=87.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCC--CcEEEEccCCCCCCc-ccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeE-
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMG--QKTLLLSHNIDTIGQ-MSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQF- 81 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~~~~G~-~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~- 81 (637)
+|||+|||||++|+++|+.|++.| .+|+|+|+.+..... ..|.. ++. ..-.+-++.+|-. .... ..+...
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~---~l~-~~~~~~l~~lGl~-~~~~-~~~~~~~ 74 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRAS---AIA-AAARRMLEALGVW-DEIA-PEAQPIT 74 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceE---Eec-HHHHHHHHHCCCh-hhhh-hhcCccc
Confidence 489999999999999999999995 999999997421100 00110 111 1112233333311 1111 111110
Q ss_pred --eeeccc------------cCch--hhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecce
Q psy9395 82 --RILNSS------------KGAA--VRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGI 144 (637)
Q Consensus 82 --~~l~~~------------~gp~--~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~ 144 (637)
...+.. .+.. .......+++..+.+.|.+.+.+ .++++. +++|+++..+++.+ .|.+.+|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~v-~v~~~~g~ 152 (403)
T PRK07333 75 DMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEA-LGIDLREATSVTDFETRDEGV-TVTLSDGS 152 (403)
T ss_pred EEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCCEE-EEEECCCC
Confidence 000000 0000 00111246778888999888887 588885 89999998766654 47777888
Q ss_pred EEEeceEEEecccc
Q psy9395 145 KFFSKTVILTTGTF 158 (637)
Q Consensus 145 ~i~a~~VIlAtG~~ 158 (637)
++.||.||.|+|.+
T Consensus 153 ~~~ad~vI~AdG~~ 166 (403)
T PRK07333 153 VLEARLLVAADGAR 166 (403)
T ss_pred EEEeCEEEEcCCCC
Confidence 89999999999985
No 148
>PLN02985 squalene monooxygenase
Probab=98.97 E-value=4.4e-09 Score=117.86 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=88.9
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhc---cHHHH-HHhhcCCe
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMG---GIMAI-ATDKSGIQ 80 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~g---g~~~~-~~~~~gi~ 80 (637)
..+||+|||||++|+++|++|++.|.+|+|+|+..... ...|...... .-.+.++.+| .+... .....++.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~-~~~~g~~L~p----~g~~~L~~LGl~d~l~~~~~~~~~~~~ 116 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREP-ERMMGEFMQP----GGRFMLSKLGLEDCLEGIDAQKATGMA 116 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCC-ccccccccCc----hHHHHHHHcCCcchhhhccCcccccEE
Confidence 45899999999999999999999999999999963211 1111111100 0112222222 11000 00111221
Q ss_pred Eeeeccc----cCch------hhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEe--cce--EE
Q psy9395 81 FRILNSS----KGAA------VRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTK--IGI--KF 146 (637)
Q Consensus 81 ~~~l~~~----~gp~------~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~--~g~--~i 146 (637)
+.. ++. .+|. .......+++..+.+.+.+.+.+.+++++..++|+++..+++.+.+|... +|. ++
T Consensus 117 v~~-~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~ 195 (514)
T PLN02985 117 VYK-DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTA 195 (514)
T ss_pred EEE-CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEE
Confidence 110 100 0110 00011245667888999998888789999877888887777777777753 453 56
Q ss_pred EeceEEEecccc
Q psy9395 147 FSKTVILTTGTF 158 (637)
Q Consensus 147 ~a~~VIlAtG~~ 158 (637)
.||.||.|+|.+
T Consensus 196 ~AdLVVgADG~~ 207 (514)
T PLN02985 196 LAPLTVVCDGCY 207 (514)
T ss_pred ECCEEEECCCCc
Confidence 799999999996
No 149
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.97 E-value=8e-09 Score=121.42 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=31.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..+|+|||||+||++||..|++.|++|+|+|+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 479999999999999999999999999999986
No 150
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.97 E-value=1.7e-08 Score=114.96 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc---eEEEe-ceEEEecccccCC
Q psy9395 103 LYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG---IKFFS-KTVILTTGTFLNG 161 (637)
Q Consensus 103 ~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g---~~i~a-~~VIlAtG~~~~~ 161 (637)
.+...|.+.+++ .+++++ ++.|+++..++++|.+|.+.++ ..+.| +.||+|||++...
T Consensus 222 ~l~~aL~~~~~~-~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 222 ALIGRLLYSLRA-RGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred HHHHHHHHHHHh-CCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 456667777776 678885 9999999877889999877543 25776 6899999998654
No 151
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.97 E-value=1.2e-08 Score=113.27 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=48.9
Q ss_pred ccCHHHHHHHHHHHHHh----cC-CeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 98 QVDRILYKQAIRFYLEN----QL-NLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~----~~-gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.+|...+...+.+.+++ .+ ++++ .+++|++|..+++.++.|.+.+| +++|+.||+|+|+|
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGY 272 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChh
Confidence 57888888888888876 43 2777 58999999877566777888777 69999999999998
No 152
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.97 E-value=8.3e-09 Score=111.87 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=87.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCC-CCCcccccCCCCccc-hhhHHHHHHHhccHHHHHHhhcC--C-eE
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNID-TIGQMSCNPSIGGIG-KSHLVKEIDAMGGIMAIATDKSG--I-QF 81 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~-~~G~~~cn~s~gg~~-~~~l~~el~~~gg~~~~~~~~~g--i-~~ 81 (637)
|||+|||||++|+++|+.|++.|++|+|+|+... ......+ ...+..+ ...-.+-++.+|-. ........ + .+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~-~~~r~~~l~~~~~~~L~~lG~~-~~~~~~~~~~~~~~ 81 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQP-MDIRVSAISQTSVDLLESLGAW-SSIVAMRVCPYKRL 81 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCC-CCccEEEecHHHHHHHHHCCCc-hhhhHhhCCccceE
Confidence 8999999999999999999999999999998631 1111000 0111001 11122333444311 11111000 0 01
Q ss_pred eeeccc----cCch----hhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEE
Q psy9395 82 RILNSS----KGAA----VRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVI 152 (637)
Q Consensus 82 ~~l~~~----~gp~----~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VI 152 (637)
+..... ..+. .......+.+..+...+.+.+...+++++. +++|+++..+++.+ .|.+.+|.+++||.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~-~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 82 ETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGN-RVTLESGAEIEAKWVI 160 (384)
T ss_pred EEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeE-EEEECCCCEEEeeEEE
Confidence 110000 0000 000112233445667777777776889985 89999998776654 4778888899999999
Q ss_pred Eecccc
Q psy9395 153 LTTGTF 158 (637)
Q Consensus 153 lAtG~~ 158 (637)
.|+|..
T Consensus 161 gADG~~ 166 (384)
T PRK08849 161 GADGAN 166 (384)
T ss_pred EecCCC
Confidence 999996
No 153
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.97 E-value=1.5e-08 Score=110.89 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=44.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc-----eEEEeceEEEecccc
Q psy9395 98 QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG-----IKFFSKTVILTTGTF 158 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g-----~~i~a~~VIlAtG~~ 158 (637)
+++...+...+.+.+++ .|++++ +++|+++..+++.+. +.+.++ ..++|+.||+|+|.|
T Consensus 193 ~~~~~~~~~~l~~~a~~-~G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 193 TGDIHKFTTGLAAACAR-LGVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred ccCHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcC
Confidence 45667778888888877 688886 789999987666543 443332 379999999999997
No 154
>KOG2404|consensus
Probab=98.96 E-value=7.1e-09 Score=104.40 Aligned_cols=150 Identities=23% Similarity=0.281 Sum_probs=87.6
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch------------------------------h
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK------------------------------S 57 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~------------------------------~ 57 (637)
.|||||||.||++|+..+-..|-.|+|+|++....|. +...+.|-.+. .
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN-SiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~ 89 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN-SIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP 89 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc-ceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence 6999999999999999999998889999998544443 22222221111 1
Q ss_pred hHHHHHHHhccHHHHHHhh-cCCeEeeeccccCchhhhh----hhc---cC-HHHHHHHHHHHHHhcCC-eEE-EcceeE
Q psy9395 58 HLVKEIDAMGGIMAIATDK-SGIQFRILNSSKGAAVRAT----RAQ---VD-RILYKQAIRFYLENQLN-LYL-FQEEVD 126 (637)
Q Consensus 58 ~l~~el~~~gg~~~~~~~~-~gi~~~~l~~~~gp~~~~~----~~~---~d-~~~~~~~l~~~l~~~~g-v~i-~~~~V~ 126 (637)
.+++.+..-.....+|... .+++...++.-.|..+... +.. +. ...+...+.+...++|. +++ .+++|+
T Consensus 90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 2222222111112233322 4444443332222221100 000 00 01334444555555554 555 499999
Q ss_pred EEEEeCCeEEEEEEec--c--eEEEeceEEEecccc
Q psy9395 127 DLIIKTNKILGVVTKI--G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 127 ~i~~~~~~v~gV~~~~--g--~~i~a~~VIlAtG~~ 158 (637)
+|..++|+|.||+..| | ..+.++.||+|||+|
T Consensus 170 ~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf 205 (477)
T KOG2404|consen 170 DILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGF 205 (477)
T ss_pred eeecCCCeEEEEEEEcCCCCccceecCceEEecCCc
Confidence 9998899999998764 3 468889999999997
No 155
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.96 E-value=6.7e-09 Score=115.71 Aligned_cols=144 Identities=19% Similarity=0.271 Sum_probs=78.5
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc---cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM---SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ 80 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~---~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~ 80 (637)
...|||+|||||+||++||..|++.|++|+|+|+. ..+|.+ .|.|+. .++...+.+... +.....|+.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk------~l~~~a~~~~~~--~~~~~~g~~ 72 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSK------ALLHSAEVFQTA--KKASPFGIS 72 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchH------HHHHHHHHHHHH--HHHHhcCcc
Confidence 34599999999999999999999999999999985 344432 233332 222221111110 111223332
Q ss_pred EeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEe----CCeEEEEEEecc--eEEEeceEEEe
Q psy9395 81 FRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK----TNKILGVVTKIG--IKFFSKTVILT 154 (637)
Q Consensus 81 ~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~----~~~v~gV~~~~g--~~i~a~~VIlA 154 (637)
.... ...++.+...+..+ ...+...+.+.+++ .+++++..+++.+..+ +++-+.|.+.+| ..+.+|.+|+|
T Consensus 73 ~~~~-~~~~~~~~~~~~~~-~~~l~~~~~~~~~~-~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViA 149 (472)
T PRK05976 73 VSGP-ALDFAKVQERKDGI-VDRLTKGVAALLKK-GKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIA 149 (472)
T ss_pred CCCC-ccCHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEe
Confidence 1100 00001110000000 01122233344444 7899988888776432 112344666666 57999999999
Q ss_pred ccccc
Q psy9395 155 TGTFL 159 (637)
Q Consensus 155 tG~~~ 159 (637)
||+.+
T Consensus 150 TGs~p 154 (472)
T PRK05976 150 TGSRP 154 (472)
T ss_pred CCCCC
Confidence 99964
No 156
>PRK06834 hypothetical protein; Provisional
Probab=98.96 E-value=6.4e-09 Score=116.13 Aligned_cols=145 Identities=16% Similarity=0.149 Sum_probs=87.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhc-C---CeEe
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKS-G---IQFR 82 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~-g---i~~~ 82 (637)
+||+|||||++|+++|+.|++.|.+|+|||+........++ .+++.. ..++.++.+| +...+.+.. . ..+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~R---a~~l~~-~s~~~L~~lG-l~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSR---AGGLHA-RTLEVLDQRG-IADRFLAQGQVAQVTGFA 78 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcc---eeeECH-HHHHHHHHcC-cHHHHHhcCCccccceee
Confidence 89999999999999999999999999999997432101110 111211 1222233333 111221110 0 0111
Q ss_pred --eeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 83 --ILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 83 --~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.++....+.-+.....+....+.+.|.+.+++ .++++. +++|+++..+++.+ .|.+.+|.+++|+.||.|+|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~-~gv~i~~~~~v~~v~~~~~~v-~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGE-LGVPIYRGREVTGFAQDDTGV-DVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCCeE-EEEECCCCEEEeCEEEEecCCC
Confidence 11111111100111234455677888888877 578884 89999998776654 3666677789999999999996
No 157
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.96 E-value=7.8e-09 Score=111.68 Aligned_cols=138 Identities=18% Similarity=0.133 Sum_probs=87.2
Q ss_pred cEEEECcchHHHHHHHHH--hhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 8 DVIVVGGGHAGTEAALVS--ARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~l--A~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
||||||||+||+++|++| ++.|++|+|||++....-...|........ +..+.....+.. .+..+..-+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~-------~~~~~~~v~~~w--~~~~v~~~~ 71 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKD-------LGPLDSLVSHRW--SGWRVYFPD 71 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccc-------ccchHHHHheec--CceEEEeCC
Confidence 899999999999999999 889999999998744321111211111111 111111111000 111221111
Q ss_pred cccCchhhh-hhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 86 SSKGAAVRA-TRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 86 ~~~gp~~~~-~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.. ..... +...+++..+.+.+.+.+. .+++.++++.|++|...++ ...|.+.+|..++|+.||.|+|..
T Consensus 72 ~~--~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~-~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 72 GS--RILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD-GVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred Cc--eEEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc-eEEEEECCCCEEEeeEEEECCCcc
Confidence 11 11111 1125788888888998888 4788888999999987665 345778888999999999999963
No 158
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.96 E-value=5.7e-09 Score=113.66 Aligned_cols=143 Identities=20% Similarity=0.211 Sum_probs=83.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
+||+|||||+||++||+.||+.|++|+|+|+.. ..+ ..|... +.. ....++......... ...+..+...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~-~~~-~~cg~~---i~~-~~l~~~g~~~~~~~~--~i~~~~~~~p~~ 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP-DNA-KPCGGA---IPL-CMVDEFALPRDIIDR--RVTKMKMISPSN 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC-CCC-CCcccc---ccH-hhHhhccCchhHHHh--hhceeEEecCCc
Confidence 589999999999999999999999999999974 332 346432 222 222222111111110 011111110000
Q ss_pred -----ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEE--eCCeEEEEEE--ec-----c--eEEEece
Q psy9395 87 -----SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLII--KTNKILGVVT--KI-----G--IKFFSKT 150 (637)
Q Consensus 87 -----~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~--~~~~v~gV~~--~~-----g--~~i~a~~ 150 (637)
.........-..+++..+.+.|.+.+.+ .|++++..++.++.. +.+..++|.. .+ | .+++|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~-~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~ 151 (398)
T TIGR02028 73 IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAAD-AGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA 151 (398)
T ss_pred eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHH-CCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence 0000000111247888888889988887 689997667777643 2233444543 11 2 4799999
Q ss_pred EEEecccc
Q psy9395 151 VILTTGTF 158 (637)
Q Consensus 151 VIlAtG~~ 158 (637)
||.|+|..
T Consensus 152 VIgADG~~ 159 (398)
T TIGR02028 152 VIGADGAN 159 (398)
T ss_pred EEECCCcc
Confidence 99999985
No 159
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.96 E-value=1e-08 Score=113.81 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=47.3
Q ss_pred hccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 97 AQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 97 ~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
.++++..+...|.+.+++ .|++++ ++.|+++.. +..+.|.+.+| .+.|+.||+|||+|..
T Consensus 178 g~i~P~~l~~~L~~~a~~-~Gv~i~~~t~V~~i~~--~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALE-LGVEIHENTPMTGLEE--GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHH-cCCEEECCCeEEEEee--CCceEEEeCCc-EEECCEEEEccccccc
Confidence 367888899999988887 688886 788999864 33455777766 6999999999999843
No 160
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.95 E-value=7e-08 Score=116.36 Aligned_cols=37 Identities=32% Similarity=0.402 Sum_probs=33.3
Q ss_pred CCCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy9395 362 QIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQD 398 (637)
Q Consensus 362 ~v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~ 398 (637)
.+||+|+|||++|..+...|.++|.+||.+++..+..
T Consensus 437 ~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 437 AVQGCILAGAANGLFGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcCC
Confidence 3899999999999999999999999999999876643
No 161
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.95 E-value=1.3e-08 Score=112.08 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=91.8
Q ss_pred EECcchHHHHHHHHHhhCCCcEEEEccCCCC-CC-cccccCC--C-Ccc---------chhhHHHHHHHh----------
Q psy9395 11 VVGGGHAGTEAALVSARMGQKTLLLSHNIDT-IG-QMSCNPS--I-GGI---------GKSHLVKEIDAM---------- 66 (637)
Q Consensus 11 VIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~-~G-~~~cn~s--~-gg~---------~~~~l~~el~~~---------- 66 (637)
|||+|.||++||+.|++.|++|+||||.... .| ...+... . ... ....+++++...
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 80 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLS 80 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHH
Confidence 7999999999999999999999999997431 22 2211100 0 000 011222332211
Q ss_pred ------ccHHHHHHhhcCCeEeeeccccCchhhhhh-hccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEe--CCeEE
Q psy9395 67 ------GGIMAIATDKSGIQFRILNSSKGAAVRATR-AQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIK--TNKIL 136 (637)
Q Consensus 67 ------gg~~~~~~~~~gi~~~~l~~~~gp~~~~~~-~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~--~~~v~ 136 (637)
......|++..|++|........|..+... ..-....+...|.+.+++ .++++ +++.|++|..+ +++++
T Consensus 81 ~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~-~Gv~i~~~~~v~~l~~~~~~g~v~ 159 (432)
T TIGR02485 81 RLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAER-LGVEIRYGIAVDRIPPEAFDGAHD 159 (432)
T ss_pred HHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHH-cCCEEEeCCEEEEEEecCCCCeEE
Confidence 112346777788888653221112100000 001224567778888877 67888 58999999876 56788
Q ss_pred EEEEec-ceEEEeceEEEecccccC
Q psy9395 137 GVVTKI-GIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 137 gV~~~~-g~~i~a~~VIlAtG~~~~ 160 (637)
+|...+ +..+.|+.||+|||++..
T Consensus 160 gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 160 GPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred EEEEcCCcEEEEcCEEEEcCCCccc
Confidence 877643 358999999999999754
No 162
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=2.7e-08 Score=113.05 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=91.3
Q ss_pred HHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch-----------h----------------hHHHHHHHhccHHH
Q psy9395 19 TEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK-----------S----------------HLVKEIDAMGGIMA 71 (637)
Q Consensus 19 l~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~-----------~----------------~l~~el~~~gg~~~ 71 (637)
+.||+.|++.|++|+|+||... +.+.+..+.||+.. . .+++.+-.-.....
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~--~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i 78 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFP--TRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAV 78 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCC--CCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999742 22233333333211 1 11111111112234
Q ss_pred HHHhhcCCeEeeec-c----c--cCchh---hh---hhh----ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEe-C
Q psy9395 72 IATDKSGIQFRILN-S----S--KGAAV---RA---TRA----QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIK-T 132 (637)
Q Consensus 72 ~~~~~~gi~~~~l~-~----~--~gp~~---~~---~~~----~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~-~ 132 (637)
.|.+..|++|.... + . .+... ++ .|. ......+...|.+.+.+ .+++++ ++.+++|..+ +
T Consensus 79 ~~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~~~ 157 (570)
T PRK05675 79 FELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLK-NGTTFLNEWYAVDLVKNQD 157 (570)
T ss_pred HHHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhc-cCCEEEECcEEEEEEEcCC
Confidence 67778899885421 0 0 11100 00 011 01234567777777775 689986 8899999875 6
Q ss_pred CeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCccccchH
Q psy9395 133 NKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTT 181 (637)
Q Consensus 133 ~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~g~~~~~ 181 (637)
|+|+||... +| ..+.|+.||+|||++.. ++. ....+.+.+|++...
T Consensus 158 g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~--~~~-~~~~~~~~tGDG~~m 208 (570)
T PRK05675 158 GAVVGVIAICIETGETVYIKSKATVLATGGAGR--IYA-STTNALINTGDGVGM 208 (570)
T ss_pred CeEEEEEEEEcCCCcEEEEecCeEEECCCCccc--ccC-CCCCCCCcCcHHHHH
Confidence 899998763 45 46899999999999843 221 123445667776333
No 163
>PRK11445 putative oxidoreductase; Provisional
Probab=98.95 E-value=1e-08 Score=109.73 Aligned_cols=145 Identities=12% Similarity=0.178 Sum_probs=84.1
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCC--C-cccccCCCCccchhhHHHHHHHhccHH-HHHH-hhcCCe
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTI--G-QMSCNPSIGGIGKSHLVKEIDAMGGIM-AIAT-DKSGIQ 80 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~--G-~~~cn~s~gg~~~~~l~~el~~~gg~~-~~~~-~~~gi~ 80 (637)
+|||+|||||+||+++|+.|++. ++|+|+|+..... + ...|.... .....+.++.+|-.. .... +.....
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l----~~~~~~~L~~lgl~~~~~~~~~~~~~~ 75 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLL----APDAQKSFAKDGLTLPKDVIANPQIFA 75 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCcc----CHHHHHHHHHcCCCCCcceeeccccce
Confidence 48999999999999999999999 9999999874221 1 11233211 112333344433110 0000 000000
Q ss_pred Eeeecccc-Cchhhh-hhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEE-ecce--EEEeceEEEe
Q psy9395 81 FRILNSSK-GAAVRA-TRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVT-KIGI--KFFSKTVILT 154 (637)
Q Consensus 81 ~~~l~~~~-gp~~~~-~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~-~~g~--~i~a~~VIlA 154 (637)
.+...... ....+. ....+++..+...+.+.+ . .+++++ ++.|+++..+++.+ .|.+ .+|. +++|+.||.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~-~gv~v~~~~~v~~i~~~~~~~-~v~~~~~g~~~~i~a~~vV~A 152 (351)
T PRK11445 76 VKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-P-ASVEVYHNSLCRKIWREDDGY-HVIFRADGWEQHITARYLVGA 152 (351)
T ss_pred eeEecccccchhhcCCCcccccHHHHHHHHHHHH-h-cCCEEEcCCEEEEEEEcCCEE-EEEEecCCcEEEEEeCEEEEC
Confidence 11111000 000011 123578888888777754 3 568884 88999987766654 3554 4553 7999999999
Q ss_pred cccc
Q psy9395 155 TGTF 158 (637)
Q Consensus 155 tG~~ 158 (637)
+|..
T Consensus 153 dG~~ 156 (351)
T PRK11445 153 DGAN 156 (351)
T ss_pred CCCC
Confidence 9985
No 164
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.94 E-value=2e-08 Score=113.96 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEe-cc--eEEEec-eEEEecccccC
Q psy9395 104 YKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTK-IG--IKFFSK-TVILTTGTFLN 160 (637)
Q Consensus 104 ~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~-~g--~~i~a~-~VIlAtG~~~~ 160 (637)
+...+.+.+++ .++++ .++.|++|..++++|+||... ++ ..+.|+ .||+|||++..
T Consensus 210 ~~~~L~~~~~~-~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 210 LAAGLRIGLQR-AGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHc-CCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 45566666666 68888 599999999888899998764 34 368886 69999999865
No 165
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.94 E-value=1.6e-08 Score=108.89 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=96.1
Q ss_pred cccEEEECcchHHHHHHHHHhhCC--CcEEEEccCCCCCCccccc-CC---CCcc--chhhHHHHHHHhccH-HHHH---
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMG--QKTLLLSHNIDTIGQMSCN-PS---IGGI--GKSHLVKEIDAMGGI-MAIA--- 73 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~~~~G~~~cn-~s---~gg~--~~~~l~~el~~~gg~-~~~~--- 73 (637)
+|||+|||||..|+++|++|++.+ ++|+|+|+.. .+|..+.+ +| +.|. ..+.+...+...+.. +..+
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~-~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED-GVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC-ccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 489999999999999999999998 9999999974 44433222 11 1111 111121122111111 0112
Q ss_pred -----------------------------HhhcCCe-Eeeecc----ccCchhh--------hh-hhccCHHHHHHHHHH
Q psy9395 74 -----------------------------TDKSGIQ-FRILNS----SKGAAVR--------AT-RAQVDRILYKQAIRF 110 (637)
Q Consensus 74 -----------------------------~~~~gi~-~~~l~~----~~gp~~~--------~~-~~~~d~~~~~~~l~~ 110 (637)
....++. .+.++. ...|.+. .+ ...+|...+...+.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 2234444 333332 2223222 11 124677778888888
Q ss_pred HHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceE-EEeceEEEecccc
Q psy9395 111 YLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIK-FFSKTVILTTGTF 158 (637)
Q Consensus 111 ~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~-i~a~~VIlAtG~~ 158 (637)
.++.+ |+++ ++++|++|...+++++.+.+.+|++ ++|+.||.|.|..
T Consensus 162 ~a~~~-g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~ 210 (429)
T COG0579 162 EAQAN-GVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLY 210 (429)
T ss_pred HHHHc-CCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchh
Confidence 88884 7777 7999999998777677788888865 9999999999984
No 166
>KOG1298|consensus
Probab=98.93 E-value=1.2e-09 Score=112.47 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=91.0
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccc-cCCCCcc------chhhHHHHHHHhccHHHHHHhhc
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSC-NPSIGGI------GKSHLVKEIDAMGGIMAIATDKS 77 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~c-n~s~gg~------~~~~l~~el~~~gg~~~~~~~~~ 77 (637)
..+||||||||.+|++.|+.|+|.|.+|.+|||.........- -..-||. +-.+-++.+|+.. ..
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~--------v~ 115 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQR--------VT 115 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceE--------ee
Confidence 4589999999999999999999999999999997322111000 0011221 1111112222110 01
Q ss_pred CCeEeeecc---------ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc----e
Q psy9395 78 GIQFRILNS---------SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG----I 144 (637)
Q Consensus 78 gi~~~~l~~---------~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g----~ 144 (637)
|..... ++ ..++.....+ .+..-.|.+.+++.+...+|+++.+++|.++..+++.+.||+..+. .
T Consensus 116 Gy~ifk-~gk~v~~pyP~~~f~~d~~Gr-sFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~ 193 (509)
T KOG1298|consen 116 GYAIFK-DGKEVDLPYPLKNFPSDPSGR-SFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEV 193 (509)
T ss_pred eeEEEe-CCceeeccCCCcCCCCCcccc-eeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceE
Confidence 111100 00 1111111111 2333578899999999899999999999999999998999998652 4
Q ss_pred EEEeceEEEecccc
Q psy9395 145 KFFSKTVILTTGTF 158 (637)
Q Consensus 145 ~i~a~~VIlAtG~~ 158 (637)
+..|...|+|+|-|
T Consensus 194 ~~~ApLTvVCDGcf 207 (509)
T KOG1298|consen 194 EAFAPLTVVCDGCF 207 (509)
T ss_pred EEecceEEEecchh
Confidence 67788999999997
No 167
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.93 E-value=1.5e-08 Score=108.43 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=73.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCC--CcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMG--QKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
..|+|||||.+|+.+|..|++.- .+|+|||++.-.. .. .+..+.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-~~------------plL~ev--------------------- 49 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-FT------------PLLYEV--------------------- 49 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-cc------------hhhhhh---------------------
Confidence 36999999999999999999974 8999999963111 00 000000
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.....+......-+.+.+....++.++..+|++|..+..+ |.+.++..+..|.+|+|+|+-
T Consensus 50 ----------a~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~---V~~~~~~~i~YD~LVvalGs~ 110 (405)
T COG1252 50 ----------ATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKK---VTLADLGEISYDYLVVALGSE 110 (405)
T ss_pred ----------hcCCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCE---EEeCCCccccccEEEEecCCc
Confidence 0001223334444555566546799999999999987765 566666789999999999984
No 168
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.92 E-value=4.5e-08 Score=115.32 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=35.2
Q ss_pred CccccccCCCCEEEEEeec-CCCCHHHHHHHHHHHHHHHHHHhC
Q psy9395 355 KSSLETKQIHGLFFAGQIN-GTTGYEEAASQGLLAGLNAALFSQ 397 (637)
Q Consensus 355 ~~tlesk~v~gLf~aGei~-G~~Gy~eA~a~G~~AG~naa~~~~ 397 (637)
+.+|+|. +||+|++||+. |......|.++|..||.|++....
T Consensus 800 DetlqTs-~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 800 DANGETS-LTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCCcccC-CCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 5788875 89999999995 555666999999999999987654
No 169
>PRK06184 hypothetical protein; Provisional
Probab=98.92 E-value=9.8e-09 Score=115.32 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=84.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe---
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR--- 82 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~--- 82 (637)
++||+|||||++|+++|+.|++.|.+|+|||+..... ...+.. ++. ..-.+.++.+|- ...+.+ .+..+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~-~~~ra~---~l~-~~~~e~l~~lGl-~~~l~~-~~~~~~~~~ 75 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPF-PGSRGK---GIQ-PRTQEVFDDLGV-LDRVVA-AGGLYPPMR 75 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC-cCccce---eec-HHHHHHHHHcCc-HHHHHh-cCcccccee
Confidence 3899999999999999999999999999999974321 111111 111 111222333331 111111 111000
Q ss_pred eec--c---------c-c-Cchh-hhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEE---ecce
Q psy9395 83 ILN--S---------S-K-GAAV-RATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVT---KIGI 144 (637)
Q Consensus 83 ~l~--~---------~-~-gp~~-~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~---~~g~ 144 (637)
... . . . .+.. +.....+.+..+.+.|.+.+.+ .++++ ++++|+++..+++.+. +.+ .++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~-~gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~ 153 (502)
T PRK06184 76 IYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAE-LGHRVEFGCELVGFEQDADGVT-ARVAGPAGEE 153 (502)
T ss_pred EEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHH-CCCEEEeCcEEEEEEEcCCcEE-EEEEeCCCeE
Confidence 000 0 0 0 0000 0111235556677888888877 47888 5889999987666543 333 4457
Q ss_pred EEEeceEEEecccc
Q psy9395 145 KFFSKTVILTTGTF 158 (637)
Q Consensus 145 ~i~a~~VIlAtG~~ 158 (637)
+++||.||.|+|.+
T Consensus 154 ~i~a~~vVgADG~~ 167 (502)
T PRK06184 154 TVRARYLVGADGGR 167 (502)
T ss_pred EEEeCEEEECCCCc
Confidence 89999999999996
No 170
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.92 E-value=1.2e-08 Score=117.00 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=48.4
Q ss_pred hccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEe--CCeEEEEEEe---cce--EEEeceEEEecccc
Q psy9395 97 AQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIK--TNKILGVVTK---IGI--KFFSKTVILTTGTF 158 (637)
Q Consensus 97 ~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~--~~~v~gV~~~---~g~--~i~a~~VIlAtG~~ 158 (637)
.++|+..+...+.+.+.+ .|++++ +++|+++..+ ++++++|.+. ++. .+.|+.||+|+|+|
T Consensus 227 g~vdp~rl~~al~~~A~~-~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 227 GQMNDSRLNVALACTAAL-AGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred cEEcHHHHHHHHHHHHHh-CCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 367888888888888887 577875 7799999876 4678777753 333 68999999999998
No 171
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.91 E-value=1.2e-08 Score=115.61 Aligned_cols=146 Identities=20% Similarity=0.223 Sum_probs=88.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHH----hhcCCeE
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIAT----DKSGIQF 81 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~----~~~gi~~ 81 (637)
.+||+|||||++|+++|+.|++.|.+|+|+|+......... .. ++. ....+.++.+|- ...+. ...++.+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~r-a~---~l~-~~~~~~L~~lGl-~~~l~~~~~~~~~~~~ 83 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPR-AV---GID-DEALRVLQAIGL-ADEVLPHTTPNHGMRF 83 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCc-ee---eeC-HHHHHHHHHcCC-hhHHHhhcccCCceEE
Confidence 58999999999999999999999999999999743221111 00 111 112233333331 11111 1112222
Q ss_pred eeecc---------ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe--cc--eEEE
Q psy9395 82 RILNS---------SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK--IG--IKFF 147 (637)
Q Consensus 82 ~~l~~---------~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~--~g--~~i~ 147 (637)
..-++ ...+.-+.....+.+..+.+.|.+.+.+.+++++. +++|+++..+++++. |.+. +| .+++
T Consensus 84 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ 162 (538)
T PRK06183 84 LDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVR 162 (538)
T ss_pred EcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEE
Confidence 11010 00000011123455667778888888776789995 999999987776653 5554 45 5899
Q ss_pred eceEEEecccc
Q psy9395 148 SKTVILTTGTF 158 (637)
Q Consensus 148 a~~VIlAtG~~ 158 (637)
||.||.|+|..
T Consensus 163 ad~vVgADG~~ 173 (538)
T PRK06183 163 ARYVVGCDGAN 173 (538)
T ss_pred EEEEEecCCCc
Confidence 99999999995
No 172
>PRK05868 hypothetical protein; Validated
Probab=98.90 E-value=1.1e-08 Score=110.39 Aligned_cols=143 Identities=18% Similarity=0.155 Sum_probs=83.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHH----hhcCCeEe
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIAT----DKSGIQFR 82 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~----~~~gi~~~ 82 (637)
.||+|||||++|+++|+.|++.|++|+|+|+.+.. ..........+ ..++.++.+|- ..... ...++.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~-~~~g~~i~~~~----~a~~~L~~lGl-~~~~~~~~~~~~~~~~~ 75 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL-RPGGQAIDVRG----PALDVLERMGL-LAAAQEHKTRIRGASFV 75 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCceeeeeCc----hHHHHHHhcCC-HHHHHhhccCccceEEE
Confidence 48999999999999999999999999999997432 21111111111 22333444431 11111 11122221
Q ss_pred eeccc----------cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceE
Q psy9395 83 ILNSS----------KGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTV 151 (637)
Q Consensus 83 ~l~~~----------~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~V 151 (637)
.-++. .+..+......+.+..+.+.+.+.+. .++++ ++++|+++..+++. +.|.+.+|.+++||.|
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~--~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlv 152 (372)
T PRK05868 76 DRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ--PSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFDLV 152 (372)
T ss_pred eCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc--CCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeCEE
Confidence 11110 00000011113345555555554332 57877 58999999765554 4477888889999999
Q ss_pred EEecccc
Q psy9395 152 ILTTGTF 158 (637)
Q Consensus 152 IlAtG~~ 158 (637)
|.|+|..
T Consensus 153 IgADG~~ 159 (372)
T PRK05868 153 IGADGLH 159 (372)
T ss_pred EECCCCC
Confidence 9999985
No 173
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.90 E-value=1.3e-07 Score=107.64 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe---cc--eEEEeceEEEecccccCCceeecccccCCCCc
Q psy9395 102 ILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK---IG--IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRF 175 (637)
Q Consensus 102 ~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~---~g--~~i~a~~VIlAtG~~~~~~~~ig~~~~~~g~~ 175 (637)
..+...|.+.+.+ .+++++ ++.+++|..++|+|+||... +| ..+.|+.||+|||++.+ ++. ....+.+.+
T Consensus 119 ~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~--~~~-~~~~~~~~t 194 (565)
T TIGR01816 119 HAILHTLYQQNLK-ADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR--IYF-STTNAHTLT 194 (565)
T ss_pred HHHHHHHHHHHHh-CCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc--cCC-CcCCCCCCc
Confidence 3577777777776 788885 88999999888999998763 35 47899999999999843 221 123445566
Q ss_pred ccc
Q psy9395 176 GDF 178 (637)
Q Consensus 176 g~~ 178 (637)
|++
T Consensus 195 GdG 197 (565)
T TIGR01816 195 GDG 197 (565)
T ss_pred cHH
Confidence 766
No 174
>PRK06126 hypothetical protein; Provisional
Probab=98.89 E-value=4.8e-08 Score=110.89 Aligned_cols=147 Identities=15% Similarity=0.194 Sum_probs=85.9
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh--------
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK-------- 76 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~-------- 76 (637)
..+||+|||||++|+++|+.|++.|++|+|+|+.... ..... ..++.. .-++-++.+| +...+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~-~~~~r---a~~l~~-r~~e~L~~lG-l~~~l~~~g~~~~~~~ 79 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT-AFNPK---ANTTSA-RSMEHFRRLG-IADEVRSAGLPVDYPT 79 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC-CCCCc---cccCCH-HHHHHHHhcC-hHHHHHhhcCCccccC
Confidence 4589999999999999999999999999999987421 11111 111111 1112222232 11111110
Q ss_pred --------cCCeEeeecc-cc-----Cc---h--hhh--hhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCe
Q psy9395 77 --------SGIQFRILNS-SK-----GA---A--VRA--TRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNK 134 (637)
Q Consensus 77 --------~gi~~~~l~~-~~-----gp---~--~~~--~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~ 134 (637)
.|-....+.. .. .+ . ... ....+++..+...|.+.+.+.+++++ ++++|+++..+++.
T Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~ 159 (545)
T PRK06126 80 DIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG 159 (545)
T ss_pred CceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe
Confidence 0110000000 00 00 0 000 11235566778888888877678898 59999999877766
Q ss_pred EEEEEEe---cc--eEEEeceEEEecccc
Q psy9395 135 ILGVVTK---IG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 135 v~gV~~~---~g--~~i~a~~VIlAtG~~ 158 (637)
+. +.+. +| .+++||.||.|+|.+
T Consensus 160 v~-v~~~~~~~g~~~~i~ad~vVgADG~~ 187 (545)
T PRK06126 160 VT-ATVEDLDGGESLTIRADYLVGCDGAR 187 (545)
T ss_pred EE-EEEEECCCCcEEEEEEEEEEecCCcc
Confidence 54 3332 35 378999999999996
No 175
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.87 E-value=2.9e-08 Score=109.52 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=87.6
Q ss_pred ccEEEECcchHHHHHHHHHhh----CCCcEEEEccCCCCCCc-----cccc-CCCCccch-hhHHHHHHHhccHHHHHHh
Q psy9395 7 FDVIVVGGGHAGTEAALVSAR----MGQKTLLLSHNIDTIGQ-----MSCN-PSIGGIGK-SHLVKEIDAMGGIMAIATD 75 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~----~G~~V~LiE~~~~~~G~-----~~cn-~s~gg~~~-~~l~~el~~~gg~~~~~~~ 75 (637)
|||+|||||++|+++|+.|++ .|.+|+|||+.....-. ..|. ....+.+. ..-++-++.+| .+.....
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG-~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIG-AWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcC-chhhhhh
Confidence 799999999999999999999 89999999994211100 0110 01111111 11223333333 1111111
Q ss_pred hcCCe---Eeeecccc-----Cch---hhhhhhccCHHHHHHHHHHHHHhcC--CeEEE-cceeEEEEEe------CCeE
Q psy9395 76 KSGIQ---FRILNSSK-----GAA---VRATRAQVDRILYKQAIRFYLENQL--NLYLF-QEEVDDLIIK------TNKI 135 (637)
Q Consensus 76 ~~gi~---~~~l~~~~-----gp~---~~~~~~~~d~~~~~~~l~~~l~~~~--gv~i~-~~~V~~i~~~------~~~v 135 (637)
..... +...+... ++. .......+++..+...|.+.+.+.+ ++++. +++|+++..+ ++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 80 DRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred hcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 11111 11111100 000 0011224566778888888888766 68884 8999999752 2223
Q ss_pred EEEEEecceEEEeceEEEecccc
Q psy9395 136 LGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 136 ~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+.|.+.+|++++|+.||.|+|..
T Consensus 160 v~v~~~~g~~i~a~llVgADG~~ 182 (437)
T TIGR01989 160 VHITLSDGQVLYTKLLIGADGSN 182 (437)
T ss_pred eEEEEcCCCEEEeeEEEEecCCC
Confidence 45777888999999999999996
No 176
>PRK07236 hypothetical protein; Provisional
Probab=98.87 E-value=1.6e-08 Score=109.62 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=80.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-hhhHHHHHHHhccHHHHHHhhcCCeE---
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-KSHLVKEIDAMGGIMAIATDKSGIQF--- 81 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-~~~l~~el~~~gg~~~~~~~~~gi~~--- 81 (637)
.+||+|||||++|+++|+.|++.|.+|+|+|+....... . -+|+. .....+.++.+|-... . ..+...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~----g~gi~l~~~~~~~l~~lg~~~~-~--~~~~~~~~~ 77 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDG-R----GAGIVLQPELLRALAEAGVALP-A--DIGVPSRER 77 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCC-C----CceeEeCHHHHHHHHHcCCCcc-c--ccccCccce
Confidence 479999999999999999999999999999997422110 0 01211 1123333444332100 0 011110
Q ss_pred eeeccccCchh---hhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccc
Q psy9395 82 RILNSSKGAAV---RATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 157 (637)
Q Consensus 82 ~~l~~~~gp~~---~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~ 157 (637)
...+ ..+..+ ........+..+.+.+.+. .+++.+ ++++|+++..+++.+ .|.+.+|.+++||.||.|+|.
T Consensus 78 ~~~~-~~g~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 78 IYLD-RDGRVVQRRPMPQTQTSWNVLYRALRAA---FPAERYHLGETLVGFEQDGDRV-TARFADGRRETADLLVGADGG 152 (386)
T ss_pred EEEe-CCCCEeeccCCCccccCHHHHHHHHHHh---CCCcEEEcCCEEEEEEecCCeE-EEEECCCCEEEeCEEEECCCC
Confidence 1111 111100 0000112334444444433 355666 588999998766654 477788889999999999998
Q ss_pred c
Q psy9395 158 F 158 (637)
Q Consensus 158 ~ 158 (637)
.
T Consensus 153 ~ 153 (386)
T PRK07236 153 R 153 (386)
T ss_pred C
Confidence 6
No 177
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.86 E-value=8e-08 Score=97.37 Aligned_cols=151 Identities=25% Similarity=0.355 Sum_probs=89.2
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCC-CCcccccCCCCccch--------------hhHHHH--------
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDT-IGQMSCNPSIGGIGK--------------SHLVKE-------- 62 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~-~G~~~cn~s~gg~~~--------------~~l~~e-------- 62 (637)
.+||||||+|.||+.||..+|.+|++|+++|+.... +|. ..-.|+||... -++.++
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG-QAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~F 83 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG-QAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAF 83 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc-eeeeecccEEEecCHHHhhcccchhHHHHHHhhhccccc
Confidence 489999999999999999999999999999985322 222 12245555310 001100
Q ss_pred ---------------HHHhccHHHHHHhhcCCeEeeecc--------ccCchhhhhhhccCH-------HHHHHHHHHHH
Q psy9395 63 ---------------IDAMGGIMAIATDKSGIQFRILNS--------SKGAAVRATRAQVDR-------ILYKQAIRFYL 112 (637)
Q Consensus 63 ---------------l~~~gg~~~~~~~~~gi~~~~l~~--------~~gp~~~~~~~~~d~-------~~~~~~l~~~l 112 (637)
++...+....|....|+.+-.+-+ ..++....++..+.+ +-|.+.+++..
T Consensus 84 DRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re~~ 163 (552)
T COG3573 84 DRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLREAQ 163 (552)
T ss_pred CCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHHHH
Confidence 011112223444445554432211 111111112222211 23555555555
Q ss_pred HhcCCeEE-EcceeEEEEEeCCeEEEEEEe--------c---------c-eEEEeceEEEecccc
Q psy9395 113 ENQLNLYL-FQEEVDDLIIKTNKILGVVTK--------I---------G-IKFFSKTVILTTGTF 158 (637)
Q Consensus 113 ~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~--------~---------g-~~i~a~~VIlAtG~~ 158 (637)
.. +.+++ +.++|..+...++++.||.-. . | ..+.|.+||+|+|+.
T Consensus 164 ~~-~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGI 227 (552)
T COG3573 164 RR-GRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGI 227 (552)
T ss_pred hC-CceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCc
Confidence 44 77888 699999999999988887631 0 1 368899999999984
No 178
>PRK07588 hypothetical protein; Provisional
Probab=98.85 E-value=1.9e-08 Score=109.28 Aligned_cols=141 Identities=17% Similarity=0.128 Sum_probs=82.9
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeE---eee
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQF---RIL 84 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~---~~l 84 (637)
||+|||||++|+++|+.|++.|.+|+|+|+..... .........+ .-.+.++.+|- ..... ..+..+ ...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g~~~~l~~----~~~~~l~~lGl-~~~l~-~~~~~~~~~~~~ 74 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELR-TGGYMVDFWG----VGYEVAKRMGI-TDQLR-EAGYQIEHVRSV 74 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCcc-CCCeEEeccC----cHHHHHHHcCC-HHHHH-hccCCccceEEE
Confidence 79999999999999999999999999999874221 1000000001 11223333331 11111 111111 111
Q ss_pred c--ccc---Cc--hh---hh-hhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEE
Q psy9395 85 N--SSK---GA--AV---RA-TRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVI 152 (637)
Q Consensus 85 ~--~~~---gp--~~---~~-~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VI 152 (637)
. +.. .+ .. .+ ....+.+..+...+.+.+. .++++ ++++|+++..+++.+. |.+.+|.++++|.||
T Consensus 75 ~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~--~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~~d~vI 151 (391)
T PRK07588 75 DPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID--GQVETIFDDSIATIDEHRDGVR-VTFERGTPRDFDLVI 151 (391)
T ss_pred cCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh--cCeEEEeCCEEeEEEECCCeEE-EEECCCCEEEeCEEE
Confidence 0 000 00 00 00 1123556667777766553 46888 5999999987766554 777888889999999
Q ss_pred Eecccc
Q psy9395 153 LTTGTF 158 (637)
Q Consensus 153 lAtG~~ 158 (637)
.|+|.+
T Consensus 152 gADG~~ 157 (391)
T PRK07588 152 GADGLH 157 (391)
T ss_pred ECCCCC
Confidence 999986
No 179
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.85 E-value=1.3e-07 Score=103.89 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=69.6
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
+.+|+|||||+||+.+|..|.+.+++|+|||+..... +. ..+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-----------------~~------~~l--------------- 51 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-----------------FT------PLL--------------- 51 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-----------------hh------hhH---------------
Confidence 4699999999999999999987789999999862110 00 000
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEE--------ecceEEEeceEEEeccc
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVT--------KIGIKFFSKTVILTTGT 157 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~--------~~g~~i~a~~VIlAtG~ 157 (637)
|.+ .....+...+...+...+.. .++.++..+|++|..++..+. +.. .+|..+.+|.+|+|||+
T Consensus 52 ----~~~--~~g~~~~~~~~~~~~~~~~~-~~~~~i~~~V~~Id~~~~~v~-~~~~~~~~~~~~~g~~i~yD~LViAtGs 123 (424)
T PTZ00318 52 ----PQT--TTGTLEFRSICEPVRPALAK-LPNRYLRAVVYDVDFEEKRVK-CGVVSKSNNANVNTFSVPYDKLVVAHGA 123 (424)
T ss_pred ----HHh--cccCCChHHhHHHHHHHhcc-CCeEEEEEEEEEEEcCCCEEE-EecccccccccCCceEecCCEEEECCCc
Confidence 000 00011122223334444444 578888999999987766532 211 35668999999999999
Q ss_pred cc
Q psy9395 158 FL 159 (637)
Q Consensus 158 ~~ 159 (637)
..
T Consensus 124 ~~ 125 (424)
T PTZ00318 124 RP 125 (424)
T ss_pred cc
Confidence 53
No 180
>KOG0404|consensus
Probab=98.84 E-value=4.7e-08 Score=93.92 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=77.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||+|+|+-.||+.+++..++.+|+|-.. .+ +...||.-. ...+++.++|+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~--~~----~i~pGGQLt--TTT~veNfPGF----------------- 63 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM--AN----GIAPGGQLT--TTTDVENFPGF----------------- 63 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeee--cc----CcCCCceee--eeeccccCCCC-----------------
Confidence 479999999999999999999999999999631 10 111122100 01122223222
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
|. -+....+.+.|++...+ -|.+++...|.++..+. +.+.+.+ +.+.+.||.||+|||+..
T Consensus 64 ---Pd------gi~G~~l~d~mrkqs~r-~Gt~i~tEtVskv~~ss-kpF~l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 64 ---PD------GITGPELMDKMRKQSER-FGTEIITETVSKVDLSS-KPFKLWT-DARPVTADAVILATGASA 124 (322)
T ss_pred ---Cc------ccccHHHHHHHHHHHHh-hcceeeeeehhhccccC-CCeEEEe-cCCceeeeeEEEecccce
Confidence 21 12234567778887776 78999988899987655 3555555 446899999999999953
No 181
>PRK08244 hypothetical protein; Provisional
Probab=98.83 E-value=3.4e-08 Score=110.72 Aligned_cols=143 Identities=18% Similarity=0.161 Sum_probs=84.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccch-hhHHHHHHHhccHHHHHHhh----cCCeE
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGK-SHLVKEIDAMGGIMAIATDK----SGIQF 81 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~-~~l~~el~~~gg~~~~~~~~----~gi~~ 81 (637)
|||+|||||++|+++|+.|++.|.+|+|||+.+..... ..+.+. ..-.+-++.+|- ...+.+. ....+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~------~ra~~l~~~~~e~l~~lGl-~~~l~~~~~~~~~~~~ 75 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY------SKALTLHPRTLEILDMRGL-LERFLEKGRKLPSGHF 75 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC------cceeEecHHHHHHHHhcCc-HHHHHhhcccccceEE
Confidence 89999999999999999999999999999997432110 011110 111222333331 1111110 01111
Q ss_pred eeecc-ccC---chhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEe--cc-eEEEeceEEE
Q psy9395 82 RILNS-SKG---AAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTK--IG-IKFFSKTVIL 153 (637)
Q Consensus 82 ~~l~~-~~g---p~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~--~g-~~i~a~~VIl 153 (637)
..... ... +.-......+.+..+.+.+.+.+.+ .++++ .+++|+++..+++++. +.+. +| .+++||.||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~a~~vVg 153 (493)
T PRK08244 76 AGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARS-LGVEIFRGAEVLAVRQDGDGVE-VVVRGPDGLRTLTSSYVVG 153 (493)
T ss_pred ecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHH-cCCeEEeCCEEEEEEEcCCeEE-EEEEeCCccEEEEeCEEEE
Confidence 10000 000 0000111235566778888888776 57888 4889999987766543 4433 45 5799999999
Q ss_pred ecccc
Q psy9395 154 TTGTF 158 (637)
Q Consensus 154 AtG~~ 158 (637)
|+|.+
T Consensus 154 ADG~~ 158 (493)
T PRK08244 154 ADGAG 158 (493)
T ss_pred CCCCC
Confidence 99995
No 182
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.82 E-value=4.7e-08 Score=113.43 Aligned_cols=60 Identities=15% Similarity=0.011 Sum_probs=48.5
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 98 QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
++++..+...+.+.+.+ +++++ +++|+++..+++.+. |.+.+|..+.|+.||+|+|.|..
T Consensus 404 ~v~p~~l~~aL~~~a~~--Gv~i~~~~~V~~i~~~~~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ--QLTIHFGHEVARLEREDDGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc--CcEEEeCCEeeEEEEeCCEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 56778888888888876 78875 889999987777654 77777777889999999999844
No 183
>PRK06753 hypothetical protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=107.65 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=83.0
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHh----hcCCeEee
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATD----KSGIQFRI 83 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~----~~gi~~~~ 83 (637)
||+|||||+||+++|+.|++.|++|+|+|+.+.. ....+..... ....+.++.+|- ...... ..++.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~g~gi~l~----~~~~~~L~~~gl-~~~~~~~~~~~~~~~~~~ 75 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV-KEVGAGIGIG----DNVIKKLGNHDL-AKGIKNAGQILSTMNLLD 75 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-cccccceeeC----hHHHHHHHhcCh-HHHHHhcCCcccceeEEc
Confidence 7999999999999999999999999999997432 2111111111 112233333321 111100 01111111
Q ss_pred ecccc---Cch-hhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 84 LNSSK---GAA-VRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 84 l~~~~---gp~-~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.++.. .+. .......+++..+...|.+.+. +..+ ++++|+++..+++++ .|.+.+|.++.+|.||.|+|..
T Consensus 76 ~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~~~~vigadG~~ 151 (373)
T PRK06753 76 DKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDKV-TIHFADGESEAFDLCIGADGIH 151 (373)
T ss_pred CCCCEEeecccccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCcE-EEEECCCCEEecCEEEECCCcc
Confidence 11100 000 0011234677777777776654 3456 589999998666654 5777888899999999999985
No 184
>PTZ00367 squalene epoxidase; Provisional
Probab=98.82 E-value=2.3e-08 Score=112.89 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=83.8
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC-CCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh-----cC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI-DTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK-----SG 78 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~-~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~-----~g 78 (637)
..|||+|||||++|+++|+.|++.|.+|+|+|+.. .... ++ .|-.-...-++.++.+|- .. ..+. .+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~--r~---~G~~L~p~g~~~L~~LGL-~d-~l~~i~~~~~~ 104 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPD--RI---VGELLQPGGVNALKELGM-EE-CAEGIGMPCFG 104 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccc--hh---hhhhcCHHHHHHHHHCCC-hh-hHhhcCcceee
Confidence 45899999999999999999999999999999963 1111 00 110001112333444431 11 1111 11
Q ss_pred CeEeeeccccC--chhhh-hhhccCHHHHHHHHHHHH--HhcCCeEEEcceeEEEEEeCC----eEEEEEEe--c-----
Q psy9395 79 IQFRILNSSKG--AAVRA-TRAQVDRILYKQAIRFYL--ENQLNLYLFQEEVDDLIIKTN----KILGVVTK--I----- 142 (637)
Q Consensus 79 i~~~~l~~~~g--p~~~~-~~~~~d~~~~~~~l~~~l--~~~~gv~i~~~~V~~i~~~~~----~v~gV~~~--~----- 142 (637)
+.+..-++... +.-.. ....+.+..+.+.+.+.+ ...+++++++++|+++..+++ ++.+|... +
T Consensus 105 ~~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~ 184 (567)
T PTZ00367 105 YVVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVP 184 (567)
T ss_pred eEEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCccccc
Confidence 11111101000 00000 011234456667777766 334789998888998865543 35666543 2
Q ss_pred ------------------ceEEEeceEEEecccc
Q psy9395 143 ------------------GIKFFSKTVILTTGTF 158 (637)
Q Consensus 143 ------------------g~~i~a~~VIlAtG~~ 158 (637)
+.+++||.||.|+|.+
T Consensus 185 ~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~ 218 (567)
T PTZ00367 185 ENPFREDPPSANPSATTVRKVATAPLVVMCDGGM 218 (567)
T ss_pred ccccccccccccccccccceEEEeCEEEECCCcc
Confidence 4689999999999986
No 185
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.81 E-value=7.6e-08 Score=106.49 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=32.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
.++|+|||||+||++||..|++.|++|+|+|+..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4799999999999999999999999999999863
No 186
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.81 E-value=3.8e-08 Score=106.49 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=47.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 98 QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
++++..+...+.+.+.+.+...+. ++.|..+..+. ++++|.+.+|. +.|+.||+|||.|
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~ 211 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAW 211 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchH
Confidence 677888999999998884445665 77888886543 67788888886 9999999999997
No 187
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.80 E-value=4.5e-08 Score=108.19 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=50.4
Q ss_pred hhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEe-CCeEEEEEEecceEEEeceEEEecccc
Q psy9395 95 TRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 95 ~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~-~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
...++|+..|.+.|.+.+.+ .|+++++..|+++..+ ++.+.+|.+.+|.+++||.||.|||..
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~-~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEE-RGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHH-TT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhc-CCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 34578999999999999998 5999988888888765 566788999999999999999999973
No 188
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.80 E-value=5.4e-08 Score=110.51 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=85.8
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR 82 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~ 82 (637)
.+.++||+|||||++|+++|+.|++.|.+|+|||+........+ .-++. ..-.+-++.+|-. ..+. ..+..+.
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~r----a~~l~-~~~~~~l~~lGl~-~~l~-~~~~~~~ 92 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSR----AICFA-KRSLEIFDRLGCG-ERMV-DKGVSWN 92 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCe----EEEEc-HHHHHHHHHcCCc-HHHH-hhCceee
Confidence 34568999999999999999999999999999999742211100 00011 1112223333311 1111 1111110
Q ss_pred ---eecc-------ccCch--h-hhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEE--ecc-eE
Q psy9395 83 ---ILNS-------SKGAA--V-RATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVT--KIG-IK 145 (637)
Q Consensus 83 ---~l~~-------~~gp~--~-~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~--~~g-~~ 145 (637)
.... ...+. . +.....+.+..+...|.+.+.+.+++++ ++++|+++..+++.+. +.+ .+| .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~ 171 (547)
T PRK08132 93 VGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGPYT 171 (547)
T ss_pred ceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCcEE
Confidence 0000 00000 0 0011124556677888888887778888 5999999987666543 333 344 37
Q ss_pred EEeceEEEecccc
Q psy9395 146 FFSKTVILTTGTF 158 (637)
Q Consensus 146 i~a~~VIlAtG~~ 158 (637)
++||.||.|+|..
T Consensus 172 i~ad~vVgADG~~ 184 (547)
T PRK08132 172 LEADWVIACDGAR 184 (547)
T ss_pred EEeCEEEECCCCC
Confidence 9999999999995
No 189
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.78 E-value=7e-08 Score=106.73 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=81.4
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCc----cch------hhHHHHHHH-hccHHHHHH
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGG----IGK------SHLVKEIDA-MGGIMAIAT 74 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg----~~~------~~l~~el~~-~gg~~~~~~ 74 (637)
..+|+|||||+||+.||.+|++.|++|+++|++...+|....++.... ... ..++..+.. ....+..+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 479999999999999999999999999999998555444332221110 000 001111100 000000000
Q ss_pred hhcCCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeE--E-EcceeEEEEEeCCeEEEEEEecc----eEEE
Q psy9395 75 DKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLY--L-FQEEVDDLIIKTNKILGVVTKIG----IKFF 147 (637)
Q Consensus 75 ~~~gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~--i-~~~~V~~i~~~~~~v~gV~~~~g----~~i~ 147 (637)
| .++ .... .+.....+.......+.+.|++.++. .++. + ++++|+++...+++ +.|.+.++ .+..
T Consensus 90 d---fp~--~~~~-~~~~~~~~~fp~~~ev~~YL~~~a~~-fgl~~~I~~~t~V~~V~~~~~~-w~V~~~~~~~~~~~~~ 161 (461)
T PLN02172 90 D---FPF--VPRF-DDESRDSRRYPSHREVLAYLQDFARE-FKIEEMVRFETEVVRVEPVDGK-WRVQSKNSGGFSKDEI 161 (461)
T ss_pred C---CCC--Cccc-ccccCcCCCCCCHHHHHHHHHHHHHH-cCCcceEEecCEEEEEeecCCe-EEEEEEcCCCceEEEE
Confidence 0 000 0000 00000001122345677888888876 4554 4 69999999876654 45665432 2467
Q ss_pred eceEEEecccc
Q psy9395 148 SKTVILTTGTF 158 (637)
Q Consensus 148 a~~VIlAtG~~ 158 (637)
+|+||+|||.+
T Consensus 162 ~d~VIvAtG~~ 172 (461)
T PLN02172 162 FDAVVVCNGHY 172 (461)
T ss_pred cCEEEEeccCC
Confidence 89999999975
No 190
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.77 E-value=1.3e-07 Score=105.40 Aligned_cols=61 Identities=25% Similarity=0.219 Sum_probs=46.0
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEe---cce--EEEeceEEEecccc
Q psy9395 98 QVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTK---IGI--KFFSKTVILTTGTF 158 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~---~g~--~i~a~~VIlAtG~~ 158 (637)
.+|...+.+.|.+.+++.+++++ .+++|+++..++++.+.|.+. +|. +++|+.||+|+|+|
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG 245 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcc
Confidence 57778889999988887556888 599999998754432334432 353 69999999999998
No 191
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.75 E-value=9e-08 Score=106.20 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=45.5
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEe-CCeEEEEE---Eecce--EEEeceEEEecccc
Q psy9395 98 QVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIK-TNKILGVV---TKIGI--KFFSKTVILTTGTF 158 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~-~~~v~gV~---~~~g~--~i~a~~VIlAtG~~ 158 (637)
++|...+.+.+.+.+.+..++++ ++++|+++..+ ++.+ .+. +.++. +++||.||+|+|+|
T Consensus 180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGaw 246 (497)
T PRK13339 180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGG 246 (497)
T ss_pred ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcc
Confidence 57778888888888866568888 58999999766 5443 343 33442 68999999999998
No 192
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.74 E-value=2.9e-07 Score=102.20 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=31.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
.++|+|||||+||++||..|++.|++|+|+|+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 4799999999999999999999999999999863
No 193
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.74 E-value=7.7e-08 Score=104.57 Aligned_cols=146 Identities=12% Similarity=0.047 Sum_probs=76.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCC-CcccccCCCCccchhhHHHHHHHhccHHHHHHh----hcCCeE
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTI-GQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATD----KSGIQF 81 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~-G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~----~~gi~~ 81 (637)
+||+|||||++|+++|+.|++.|++|+|+|+..... ....|. +.+.. ...+-++.+|- ...... ..++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a---~~l~~-~~~~~L~~lGl-~~~l~~~~~~~~~~~~ 77 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRA---GVLEQ-GTVDLLREAGV-DERMDREGLVHEGTEI 77 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeE---eeECH-HHHHHHHHCCC-hHHHHhcCceecceEE
Confidence 799999999999999999999999999999974311 000111 11111 12233344331 111111 011111
Q ss_pred eeecc---ccCchhhh-hhh-ccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEe-cce--EEEeceEE
Q psy9395 82 RILNS---SKGAAVRA-TRA-QVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTK-IGI--KFFSKTVI 152 (637)
Q Consensus 82 ~~l~~---~~gp~~~~-~~~-~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~-~g~--~i~a~~VI 152 (637)
..-.. ...+.... ... ......+...+.+.+... ++.+ ++.+++.+...++....|.+. +|. +++||.||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI 156 (390)
T TIGR02360 78 AFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA 156 (390)
T ss_pred eeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence 10000 00000000 000 122345556666666653 4555 577776664322222346664 664 79999999
Q ss_pred Eecccc
Q psy9395 153 LTTGTF 158 (637)
Q Consensus 153 lAtG~~ 158 (637)
.|+|..
T Consensus 157 GADG~~ 162 (390)
T TIGR02360 157 GCDGFH 162 (390)
T ss_pred ECCCCc
Confidence 999986
No 194
>PRK06996 hypothetical protein; Provisional
Probab=98.72 E-value=1.1e-07 Score=103.62 Aligned_cols=146 Identities=15% Similarity=0.094 Sum_probs=83.6
Q ss_pred CcccEEEECcchHHHHHHHHHhhCC----CcEEEEccCCCCCCcccccCCCCccch-hhHHHHHHHhccHHHHHHhhcCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMG----QKTLLLSHNIDTIGQMSCNPSIGGIGK-SHLVKEIDAMGGIMAIATDKSGI 79 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G----~~V~LiE~~~~~~G~~~cn~s~gg~~~-~~l~~el~~~gg~~~~~~~~~gi 79 (637)
..|||+|||||++|+++|+.|++.| ++|+|+|+... ... + ....+.+. ..-.+.++.++-.-........+
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~-~~~--~-~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~ 85 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP-AAS--A-NDPRAIALSHGSRVLLETLGAWPADATPIEHI 85 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC-CcC--C-CCceEEEecHHHHHHHHhCCCchhcCCcccEE
Confidence 3489999999999999999999987 57999999632 110 1 11111111 11122333433211100000011
Q ss_pred eEeeeccccC--------chhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc---eEEE
Q psy9395 80 QFRILNSSKG--------AAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG---IKFF 147 (637)
Q Consensus 80 ~~~~l~~~~g--------p~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g---~~i~ 147 (637)
++.. ....+ .........+++..+.+.|.+.+.+ .++.+. +++++++..+++.+ .+.+.++ .+++
T Consensus 86 ~~~~-~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~-~g~~~~~~~~v~~~~~~~~~v-~v~~~~~~g~~~i~ 162 (398)
T PRK06996 86 HVSQ-RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRG-TPVRWLTSTTAHAPAQDADGV-TLALGTPQGARTLR 162 (398)
T ss_pred EEec-CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHh-CCCEEEcCCeeeeeeecCCeE-EEEECCCCcceEEe
Confidence 1100 00000 0001112356777888999998887 467774 88898886555544 3555543 6899
Q ss_pred eceEEEeccc
Q psy9395 148 SKTVILTTGT 157 (637)
Q Consensus 148 a~~VIlAtG~ 157 (637)
||.||.|+|.
T Consensus 163 a~lvIgADG~ 172 (398)
T PRK06996 163 ARIAVQAEGG 172 (398)
T ss_pred eeEEEECCCC
Confidence 9999999996
No 195
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.72 E-value=8.6e-08 Score=104.56 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=84.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe---Eee
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ---FRI 83 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~---~~~ 83 (637)
-+|+|||||+||+++|+.|++.|++|+|+|+... ........... ....+.++.+|- ..... ..+.. +..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~-~~~~g~gi~l~----~~~~~~L~~~Gl-~~~l~-~~~~~~~~~~~ 75 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE-LSEVGAGLQLA----PNAMRHLERLGV-ADRLS-GTGVTPKALYL 75 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-cCcCCccceeC----hhHHHHHHHCCC-hHHHh-hcccCcceEEE
Confidence 3799999999999999999999999999998742 21111001111 122233333331 11111 11111 111
Q ss_pred eccccC---------ch---hhh-hhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEE---ecceEE
Q psy9395 84 LNSSKG---------AA---VRA-TRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVT---KIGIKF 146 (637)
Q Consensus 84 l~~~~g---------p~---~~~-~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~---~~g~~i 146 (637)
.+...+ +. .+. +...+.+..+.+.|.+.+.+.+++++ ++++|+++..+++.+ .+.+ .++.++
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v-~v~~~~~~~~~~~ 154 (400)
T PRK06475 76 MDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSI-TATIIRTNSVETV 154 (400)
T ss_pred ecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCce-EEEEEeCCCCcEE
Confidence 111000 00 000 11135777888899888877678888 599999997666554 3433 233579
Q ss_pred EeceEEEecccc
Q psy9395 147 FSKTVILTTGTF 158 (637)
Q Consensus 147 ~a~~VIlAtG~~ 158 (637)
.||.||.|+|..
T Consensus 155 ~adlvIgADG~~ 166 (400)
T PRK06475 155 SAAYLIACDGVW 166 (400)
T ss_pred ecCEEEECCCcc
Confidence 999999999996
No 196
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.71 E-value=1.3e-07 Score=104.18 Aligned_cols=152 Identities=24% Similarity=0.282 Sum_probs=89.6
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCccccc--CCCCccch-----hhHHHH----HHHh-------
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCN--PSIGGIGK-----SHLVKE----IDAM------- 66 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn--~s~gg~~~-----~~l~~e----l~~~------- 66 (637)
..+||+|||||+.|+..|..||.+|++|+|+|++.-..|..+-+ .-+||.-. -.+++| -+.+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 56999999999999999999999999999999974333332211 12333211 011111 0100
Q ss_pred -----------c----cHH-----HHHHhhcCC-----eEeeecc----ccCchh---------hhhhhccCHHHHHHHH
Q psy9395 67 -----------G----GIM-----AIATDKSGI-----QFRILNS----SKGAAV---------RATRAQVDRILYKQAI 108 (637)
Q Consensus 67 -----------g----g~~-----~~~~~~~gi-----~~~~l~~----~~gp~~---------~~~~~~~d~~~~~~~l 108 (637)
. ..+ .......|+ ..+.++. ...|.+ +-+..++|...+....
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 0 000 011111222 1122211 122322 1122345655555555
Q ss_pred HHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc-----eEEEeceEEEecccc
Q psy9395 109 RFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG-----IKFFSKTVILTTGTF 158 (637)
Q Consensus 109 ~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g-----~~i~a~~VIlAtG~~ 158 (637)
...+.. .|.+++ .++|+++..+++ ++||.+.|. ..++|+.||-|||.|
T Consensus 171 a~~A~~-~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW 224 (532)
T COG0578 171 ARDAAE-HGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPW 224 (532)
T ss_pred HHHHHh-cccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCcc
Confidence 555555 566664 889999998888 999998753 379999999999998
No 197
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.71 E-value=9.6e-08 Score=103.87 Aligned_cols=145 Identities=13% Similarity=0.061 Sum_probs=80.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCC-CcccccCCCCccchhhHHHHHHHhccHHHHHHh----hcCCeE
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTI-GQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATD----KSGIQF 81 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~-G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~----~~gi~~ 81 (637)
+||+|||||++|+++|+.|++.|++|+|+|+..... ....|. +.+ ...-.+-++.+|- ...+.. ..++.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a---~~l-~~~~~~~l~~lGl-~~~l~~~~~~~~~~~~ 77 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRA---GVL-EQGTVDLLREAGV-GERMDREGLVHDGIEL 77 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccce---eEE-CHhHHHHHHHcCC-hHHHHhcCCccCcEEE
Confidence 799999999999999999999999999999974210 111111 111 1122333444431 111111 111222
Q ss_pred eeeccc----cCchhh-hh-hhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEE-ecc--eEEEeceE
Q psy9395 82 RILNSS----KGAAVR-AT-RAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVT-KIG--IKFFSKTV 151 (637)
Q Consensus 82 ~~l~~~----~gp~~~-~~-~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~-~~g--~~i~a~~V 151 (637)
.. ++. ..+... +. ...+.+..+.+.+.+.+.+ .++++ ++++|+++...++....|.. .+| .+++||.|
T Consensus 78 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~-~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~v 155 (392)
T PRK08243 78 RF-DGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLA-AGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFI 155 (392)
T ss_pred EE-CCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHh-CCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEE
Confidence 11 100 000000 00 0122344555566665555 57777 58899888642332334555 355 37999999
Q ss_pred EEecccc
Q psy9395 152 ILTTGTF 158 (637)
Q Consensus 152 IlAtG~~ 158 (637)
|.|+|..
T Consensus 156 VgADG~~ 162 (392)
T PRK08243 156 AGCDGFH 162 (392)
T ss_pred EECCCCC
Confidence 9999985
No 198
>PRK07538 hypothetical protein; Provisional
Probab=98.71 E-value=9.4e-08 Score=104.69 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=82.4
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc-hhhHHHHHHHhccHHHHHHhhcCCe---Eee
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG-KSHLVKEIDAMGGIMAIATDKSGIQ---FRI 83 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~-~~~l~~el~~~gg~~~~~~~~~gi~---~~~ 83 (637)
||+|||||+||+++|+.|++.|++|+|+|+... .... -.|+. ....++.++.+|- ...+ ...++. +..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~-~~~~-----g~gi~l~p~~~~~L~~lgl-~~~l-~~~~~~~~~~~~ 73 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE-LRPL-----GVGINLLPHAVRELAELGL-LDAL-DAIGIRTRELAY 73 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc-cccc-----CcceeeCchHHHHHHHCCC-HHHH-HhhCCCCcceEE
Confidence 799999999999999999999999999999742 2111 01111 0123344444431 1111 111111 111
Q ss_pred eccc--------cCc--hhhhhhhccCHHHHHHHHHHHHHhc-CCeEE-EcceeEEEEEeCCeEEEEEEec-----ceEE
Q psy9395 84 LNSS--------KGA--AVRATRAQVDRILYKQAIRFYLENQ-LNLYL-FQEEVDDLIIKTNKILGVVTKI-----GIKF 146 (637)
Q Consensus 84 l~~~--------~gp--~~~~~~~~~d~~~~~~~l~~~l~~~-~gv~i-~~~~V~~i~~~~~~v~gV~~~~-----g~~i 146 (637)
.+.. .+. ....+...+++..+.+.|.+.+.+. +...+ ++++|+++..+++.+. +.+.+ +.++
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~ 152 (413)
T PRK07538 74 FNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSV 152 (413)
T ss_pred EcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceE
Confidence 1100 000 0001112367778888888877653 34556 5999999976655432 33322 2489
Q ss_pred EeceEEEecccc
Q psy9395 147 FSKTVILTTGTF 158 (637)
Q Consensus 147 ~a~~VIlAtG~~ 158 (637)
+||.||.|+|..
T Consensus 153 ~adlvIgADG~~ 164 (413)
T PRK07538 153 RGDVLIGADGIH 164 (413)
T ss_pred EeeEEEECCCCC
Confidence 999999999985
No 199
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.70 E-value=2.9e-07 Score=106.69 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=31.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
..+|+|||||+||++||..|++.|++|+|+|+..
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4699999999999999999999999999999863
No 200
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.70 E-value=2.3e-07 Score=103.39 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=45.5
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEE---ecc--eEEEeceEEEecccc
Q psy9395 98 QVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVT---KIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~---~~g--~~i~a~~VIlAtG~~ 158 (637)
++|+..+..++.+.+++ .|+++ .+++|+++..+++..+.+.+ .+| .+++|+.||+|+|+|
T Consensus 174 ~Vdp~~l~~aL~~~a~~-~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQ-NGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred EECHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 67888999999998887 57888 58899999875433233433 223 369999999999997
No 201
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.69 E-value=1.7e-07 Score=107.80 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=84.3
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhC-CCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhh---
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARM-GQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK--- 76 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~-G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~--- 76 (637)
|.|...+||+|||||++|+++|+.|++. |.+|+|||+.+.....+. + -|+.. .-++-++.+|- ...+.+.
T Consensus 27 ~~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~gr---A-~gl~p-rtleiL~~lGl-~d~l~~~g~~ 100 (634)
T PRK08294 27 ADLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQ---A-DGIAC-RTMEMFQAFGF-AERILKEAYW 100 (634)
T ss_pred ccCCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCe---e-eEECh-HHHHHHHhccc-hHHHHhhccc
Confidence 3355679999999999999999999994 999999998643211100 0 01111 12222333331 1111111
Q ss_pred -cCCeEeeeccc---------cCch----hh-hhhhccCHHHHHHHHHHHHHhcCC-eEE-EcceeEEEEEeCC--eEEE
Q psy9395 77 -SGIQFRILNSS---------KGAA----VR-ATRAQVDRILYKQAIRFYLENQLN-LYL-FQEEVDDLIIKTN--KILG 137 (637)
Q Consensus 77 -~gi~~~~l~~~---------~gp~----~~-~~~~~~d~~~~~~~l~~~l~~~~g-v~i-~~~~V~~i~~~~~--~v~g 137 (637)
..+.+..-... ..+. .. .+...+++..+.+.|.+.+.+.++ +.+ ++.+++++..++. ..+.
T Consensus 101 ~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~ 180 (634)
T PRK08294 101 INETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT 180 (634)
T ss_pred ccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE
Confidence 01111100000 0000 00 011234556677888888876443 566 5889999976532 2233
Q ss_pred EEEe------cc--eEEEeceEEEecccc
Q psy9395 138 VVTK------IG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 138 V~~~------~g--~~i~a~~VIlAtG~~ 158 (637)
|.+. +| ++++||.||.|+|+.
T Consensus 181 v~l~~~~~~~~g~~~tv~A~~lVGaDGa~ 209 (634)
T PRK08294 181 VTLRRTDGEHEGEEETVRAKYVVGCDGAR 209 (634)
T ss_pred EEEEECCCCCCCceEEEEeCEEEECCCCc
Confidence 4443 34 589999999999995
No 202
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.68 E-value=2.7e-07 Score=103.41 Aligned_cols=33 Identities=36% Similarity=0.611 Sum_probs=31.4
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
+|||+|||||+||++||..|++.|++|+|||++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 499999999999999999999999999999973
No 203
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.67 E-value=6.4e-07 Score=99.82 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=36.8
Q ss_pred ccccccCCCCEEEEEeecCCC-CHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9395 356 SSLETKQIHGLFFAGQINGTT-GYEEAASQGLLAGLNAALFSQDRDP 401 (637)
Q Consensus 356 ~tlesk~v~gLf~aGei~G~~-Gy~eA~a~G~~AG~naa~~~~~~~~ 401 (637)
++|+|. +||+|++||+.+.. -..+|.++|..||.++.+++.|+.+
T Consensus 424 ~~~~Ts-~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~~~ 469 (471)
T PRK12810 424 NAYQTS-NPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMGSTA 469 (471)
T ss_pred CcccCC-CCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 578865 89999999996533 3449999999999999999887654
No 204
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.64 E-value=1.2e-07 Score=108.54 Aligned_cols=47 Identities=32% Similarity=0.605 Sum_probs=37.8
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc----ccccCCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ----MSCNPSI 51 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~----~~cn~s~ 51 (637)
.+|||+|||||++|..||..|++.|++|+|||+....+|. ..|.|+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK 165 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSK 165 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchH
Confidence 3699999999999999999999999999999974223443 3466654
No 205
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.62 E-value=6.4e-07 Score=103.56 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=36.2
Q ss_pred cccccCCCCEEEEEeecC-CCCHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy9395 357 SLETKQIHGLFFAGQING-TTGYEEAASQGLLAGLNAALFSQDRDPW 402 (637)
Q Consensus 357 tlesk~v~gLf~aGei~G-~~Gy~eA~a~G~~AG~naa~~~~~~~~~ 402 (637)
+++|. +||+|++||+.+ ..-...|.++|..||.|+.+++.|+++.
T Consensus 461 ~~~Ts-~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g~~~~ 506 (652)
T PRK12814 461 TLQTS-VAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNGKPVT 506 (652)
T ss_pred CCcCC-CCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 56665 899999999953 3223499999999999999999887653
No 206
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.61 E-value=1e-06 Score=104.17 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=65.2
Q ss_pred cEEEECcchHHHHHHHHHhhC----CCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEee
Q psy9395 8 DVIVVGGGHAGTEAALVSARM----GQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRI 83 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~----G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~ 83 (637)
+|+|||||+||+.+|..+.+. +++|+|+++.+ ..+-.+|..+. .+++
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~-~~~Y~r~~L~~-------------~~~~--------------- 55 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP-RIAYDRVHLSS-------------YFSH--------------- 55 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC-CCcccCCcchH-------------hHcC---------------
Confidence 799999999999999999764 57899999863 22211111100 0000
Q ss_pred eccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 84 LNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 84 l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
.....+.....+.+++ .+++++ ++.|+++..+.. .|.+.+|..+.+|.+|+|||+.+.
T Consensus 56 ---------------~~~~~l~~~~~~~~~~-~gI~~~~g~~V~~Id~~~~---~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 56 ---------------HTAEELSLVREGFYEK-HGIKVLVGERAITINRQEK---VIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred ---------------CCHHHccCCCHHHHHh-CCCEEEcCCEEEEEeCCCc---EEEECCCcEEECCEEEECCCCCcC
Confidence 0000011111122233 689986 678988865432 356677888999999999999643
No 207
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.59 E-value=7.9e-07 Score=101.46 Aligned_cols=148 Identities=20% Similarity=0.312 Sum_probs=84.4
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCC-CcccccCCC-Cccch-hhHHHHHHHhcc-HHHHHHhhcC--
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTI-GQMSCNPSI-GGIGK-SHLVKEIDAMGG-IMAIATDKSG-- 78 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~-G~~~cn~s~-gg~~~-~~l~~el~~~gg-~~~~~~~~~g-- 78 (637)
+..+|+|||||++|+++|+.|++.|.+|+|+|+..... +.. .. +++.. ..-.+.++.+|- ....+.+...
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G----~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~ 155 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEG----KYRGPIQIQSNALAALEAIDIDVAEQVMEAGCIT 155 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecccccccccc----ccCcccccCHHHHHHHHHcCcchHHHHHhhcCcc
Confidence 45899999999999999999999999999999964211 110 00 11111 112333444441 1111111100
Q ss_pred -CeEe-eeccccC----------chh-hh--hhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc
Q psy9395 79 -IQFR-ILNSSKG----------AAV-RA--TRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG 143 (637)
Q Consensus 79 -i~~~-~l~~~~g----------p~~-~~--~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g 143 (637)
.... ..+...+ +.. .+ ....+.+..+.+.|.+.+.. .+...+++|+++..+++.+. |.+.+|
T Consensus 156 ~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~Vt-V~~~dG 232 (668)
T PLN02927 156 GDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGDKVT-VVLENG 232 (668)
T ss_pred cceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEE-EEECCC
Confidence 0010 0010000 100 01 11245666777777654422 22235789999987777654 777888
Q ss_pred eEEEeceEEEeccccc
Q psy9395 144 IKFFSKTVILTTGTFL 159 (637)
Q Consensus 144 ~~i~a~~VIlAtG~~~ 159 (637)
.++.+|.||.|+|.++
T Consensus 233 ~ti~aDlVVGADG~~S 248 (668)
T PLN02927 233 QRYEGDLLVGADGIWS 248 (668)
T ss_pred CEEEcCEEEECCCCCc
Confidence 8899999999999973
No 208
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.58 E-value=1.2e-06 Score=93.16 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=34.1
Q ss_pred cccccCCCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHh
Q psy9395 357 SLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFS 396 (637)
Q Consensus 357 tlesk~v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~ 396 (637)
..+|+ ++|+|+||-+.|+--...+.+||..||..|+..+
T Consensus 506 pv~s~-~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l 544 (622)
T COG1148 506 PVDSN-RDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLL 544 (622)
T ss_pred ccccc-CCcEEEeecccCCccHHHHHHHhHHHHHHHHHHh
Confidence 34555 8999999999999999999999999999888764
No 209
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.57 E-value=7.7e-07 Score=97.51 Aligned_cols=141 Identities=20% Similarity=0.268 Sum_probs=82.3
Q ss_pred cEEEECcchHHHHHHHHHhhCC-CcEEEEccCCCCCCcccccCCCCccc-hhhHHHHHHHhccH--HHHHHhh-----cC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG-QKTLLLSHNIDTIGQMSCNPSIGGIG-KSHLVKEIDAMGGI--MAIATDK-----SG 78 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~~~~~G~~~cn~s~gg~~-~~~l~~el~~~gg~--~~~~~~~-----~g 78 (637)
+|+|||||++|+++|+.|++.| .+|+|+|+.+. .+. +. .|+. .....+.++.+|-. +...... ..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~-~~~--~G---~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 75 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA-FGE--VG---AGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQD 75 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc-CCC--Cc---cceeeCccHHHHHHHcCChhHHHHHhcCCCccCcc
Confidence 5999999999999999999998 59999999743 221 10 0110 11223334444321 1111110 01
Q ss_pred CeEeeeccccCch----h-h-hhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceE
Q psy9395 79 IQFRILNSSKGAA----V-R-ATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTV 151 (637)
Q Consensus 79 i~~~~l~~~~gp~----~-~-~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~V 151 (637)
+.+...+...+.. . . .....+.+..+.+.+.+.+. +..+ ++++|+++..++++ +.|.+.+|.++.||.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~v 151 (414)
T TIGR03219 76 IWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP---EGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCDLL 151 (414)
T ss_pred eeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC---CceEEcCCEEEEEEecCCc-EEEEEcCCCEEEeeEE
Confidence 1111111111000 0 0 01124667777777776653 3344 68999999866665 4577778889999999
Q ss_pred EEecccc
Q psy9395 152 ILTTGTF 158 (637)
Q Consensus 152 IlAtG~~ 158 (637)
|+|+|.+
T Consensus 152 VgADG~~ 158 (414)
T TIGR03219 152 IGADGIK 158 (414)
T ss_pred EECCCcc
Confidence 9999996
No 210
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.56 E-value=1.1e-07 Score=92.82 Aligned_cols=31 Identities=48% Similarity=0.800 Sum_probs=29.8
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
||+|||||+||+.||..|++.|.+|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecc
Confidence 7999999999999999999999999999875
No 211
>KOG2853|consensus
Probab=98.54 E-value=8.5e-07 Score=90.32 Aligned_cols=154 Identities=21% Similarity=0.352 Sum_probs=95.9
Q ss_pred CCCcccEEEECcchHHHHHHHHHhh----CCCcEEEEccCCCCCCcccccCCCCccchh--------------hHHHHHH
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSAR----MGQKTLLLSHNIDTIGQMSCNPSIGGIGKS--------------HLVKEID 64 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~----~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~--------------~l~~el~ 64 (637)
|..++||+|||||..|++.|+.|.+ .|.+|+++|++ +.....+...|.||+.-. .+++...
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd-dtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ 161 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD-DTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAR 161 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc-CcccccceeeeecceeeecccchhhhhhhHHHHHHHHHH
Confidence 3457899999999999999999975 37999999997 556666666777776431 1222111
Q ss_pred H-hc--------------c-----------HH---HHHHhhcCCeEeeec----cccCchhhh---------h--hhccC
Q psy9395 65 A-MG--------------G-----------IM---AIATDKSGIQFRILN----SSKGAAVRA---------T--RAQVD 100 (637)
Q Consensus 65 ~-~g--------------g-----------~~---~~~~~~~gi~~~~l~----~~~gp~~~~---------~--~~~~d 100 (637)
. ++ | .| .+...+.|-..+.+. ..++|.+.. . -..+|
T Consensus 162 ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfd 241 (509)
T KOG2853|consen 162 EHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFD 241 (509)
T ss_pred HhhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccC
Confidence 1 11 0 00 011222232222222 133443211 0 11478
Q ss_pred HHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCC-----------------eEEEEEE--ecc--eEEEeceEEEecccc
Q psy9395 101 RILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN-----------------KILGVVT--KIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 101 ~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~-----------------~v~gV~~--~~g--~~i~a~~VIlAtG~~ 158 (637)
++.+...+++.+.. .|+.+++.+|++...+.. ++.++.. .++ +.+++..+|+|+|+|
T Consensus 242 pw~LLs~~rrk~~~-lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~ 319 (509)
T KOG2853|consen 242 PWALLSGIRRKAIT-LGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW 319 (509)
T ss_pred HHHHHHHHHHHhhh-hcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence 88888889988887 789999999998876532 2223322 222 578999999999998
No 212
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.52 E-value=1.5e-06 Score=100.48 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=31.8
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
..+|+|||||+||++||+.|++.|++|+++|+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4689999999999999999999999999999873
No 213
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.50 E-value=8.6e-07 Score=99.41 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 103 LYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 103 ~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.+.+.|.+.+++ .|+++ .++.|++|..+++++.+|.+.+|.++.||.||+|+|.+
T Consensus 230 ~l~~~L~~~~~~-~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 230 QIAESLVKGLEK-HGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHH-CCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 466778888887 56777 59999999888888999999888889999999999986
No 214
>KOG2614|consensus
Probab=98.50 E-value=9.2e-07 Score=93.07 Aligned_cols=142 Identities=21% Similarity=0.252 Sum_probs=81.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc-cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee-
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM-SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL- 84 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~-~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l- 84 (637)
-+|+|||||.+|+++|.+++|.|.+|+|+|+..+..+.+ +-|. +.. -++.+++++ ..+.....+++....
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L-----~~n-g~~aLkai~--~~e~i~~~gip~~~~v 74 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINL-----ALN-GWRALKAIG--LKEQIREQGIPLGGRV 74 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceee-----hhh-HHHHHHHcc--cHHHHHHhcCccccee
Confidence 489999999999999999999999999999864444331 1111 111 456666766 445555555554311
Q ss_pred --ccccCc-hhh----hhhh---ccCHH-HHHHHHHHHHHhcCCeEEE-cc----eeEEEEEeCCeEEEEEEecceEEEe
Q psy9395 85 --NSSKGA-AVR----ATRA---QVDRI-LYKQAIRFYLENQLNLYLF-QE----EVDDLIIKTNKILGVVTKIGIKFFS 148 (637)
Q Consensus 85 --~~~~gp-~~~----~~~~---~~d~~-~~~~~l~~~l~~~~gv~i~-~~----~V~~i~~~~~~v~gV~~~~g~~i~a 148 (637)
....|- ... .+.. .+.++ .....+.+++. .+++.+. +. .+..+.... .-..|.+.+|.++++
T Consensus 75 ~~~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~-~~~ikf~~~~~~~~~~~~~~~~~-~~~~v~l~~g~~~~~ 152 (420)
T KOG2614|consen 75 LIHGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALP-TGTIKFHSNLSCTSKDVEIETLG-KKLVVHLSDGTTVKG 152 (420)
T ss_pred eeecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcC-CCeeecccccccccccceeeecc-cccceecCCCcEEEe
Confidence 111111 000 0110 12233 33344444433 3566663 21 222222111 112367788899999
Q ss_pred ceEEEecccc
Q psy9395 149 KTVILTTGTF 158 (637)
Q Consensus 149 ~~VIlAtG~~ 158 (637)
|.+|-|+|.+
T Consensus 153 dlligCDGa~ 162 (420)
T KOG2614|consen 153 DLLIGCDGAY 162 (420)
T ss_pred eEEEEcCchH
Confidence 9999999996
No 215
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.49 E-value=7.9e-07 Score=92.72 Aligned_cols=53 Identities=26% Similarity=0.301 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCeEEE-cceeEEEEEe--CCeEEEEEEec--c----eEEEeceEEEecccc
Q psy9395 105 KQAIRFYLENQLNLYLF-QEEVDDLIIK--TNKILGVVTKI--G----IKFFSKTVILTTGTF 158 (637)
Q Consensus 105 ~~~l~~~l~~~~gv~i~-~~~V~~i~~~--~~~v~gV~~~~--g----~~i~a~~VIlAtG~~ 158 (637)
...+...+ +.+|++++ ++.|+.|..+ ++++.+|...+ + ..+.++.||+|+|+.
T Consensus 196 ~~~L~~a~-~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai 257 (296)
T PF00732_consen 196 TTYLPPAL-KRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAI 257 (296)
T ss_dssp HHHHHHHT-TTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHH
T ss_pred hcccchhh-ccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCC
Confidence 34444444 44799995 9999999776 77889988764 2 367789999999996
No 216
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.49 E-value=1.2e-06 Score=94.49 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=73.6
Q ss_pred cEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcc-cccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 8 DVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQM-SCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~-~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
||+|||||+||+++|+.|++. |++|+|+|+.+...+.. -|.. .........+ .+...... ...+..+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~---~~~~~~~~~~--~~~~~v~~--~W~~~~v~~- 72 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFF---DSDLSDAQHA--WLADLVQT--DWPGYEVRF- 72 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceec---ccccchhhhh--hhhhhheE--eCCCCEEEC-
Confidence 899999999999999999987 99999999974222211 1111 1100100000 00000000 001111111
Q ss_pred ccccCchhh-hhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 85 NSSKGAAVR-ATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 85 ~~~~gp~~~-~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.. ..... .+...+++..+.+.+.+.+.. + ..++++|+++ +.+. |.+.+|.+++|+.||.|+|..
T Consensus 73 -~~-~~~~l~~~Y~~I~r~~f~~~l~~~l~~--~-i~~~~~V~~v--~~~~---v~l~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 73 -PK-YRRKLKTAYRSMTSTRFHEGLLQAFPE--G-VILGRKAVGL--DADG---VDLAPGTRINARSVIDCRGFK 137 (370)
T ss_pred -cc-hhhhcCCCceEEEHHHHHHHHHHhhcc--c-EEecCEEEEE--eCCE---EEECCCCEEEeeEEEECCCCC
Confidence 00 00000 112245666777777666543 3 2348888888 3443 444678899999999999974
No 217
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.48 E-value=4.9e-06 Score=92.98 Aligned_cols=46 Identities=20% Similarity=0.162 Sum_probs=37.4
Q ss_pred CccccccCCCCEEEEEeecC-CCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9395 355 KSSLETKQIHGLFFAGQING-TTGYEEAASQGLLAGLNAALFSQDRDP 401 (637)
Q Consensus 355 ~~tlesk~v~gLf~aGei~G-~~Gy~eA~a~G~~AG~naa~~~~~~~~ 401 (637)
+.+++|. +||+|+|||+.+ .....+|.++|..||.++.+++.|+.+
T Consensus 437 ~~~~~Ts-~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~~~ 483 (485)
T TIGR01317 437 YDDYSTS-IPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMGSSV 483 (485)
T ss_pred CCCceEC-CCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567775 999999999954 344559999999999999999987654
No 218
>PRK13984 putative oxidoreductase; Provisional
Probab=98.47 E-value=2.7e-06 Score=97.87 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=36.5
Q ss_pred cCccccccCCCCEEEEEeecCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy9395 354 LKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQD 398 (637)
Q Consensus 354 l~~tlesk~v~gLf~aGei~G~~Gy~eA~a~G~~AG~naa~~~~~ 398 (637)
+|++++|. +||+|+|||+.+.....+|+++|..||.++.+++.+
T Consensus 560 vd~~~~Ts-~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 560 TNEYGQTS-IPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred eCCCCccC-CCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678876 999999999975444559999999999999998765
No 219
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.44 E-value=1.8e-06 Score=95.19 Aligned_cols=132 Identities=22% Similarity=0.200 Sum_probs=74.1
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCc-EEEEccCCCCCCccccc--CCCCccchhhHHHHHHHhccHHHHHHhhcCCeE
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQK-TLLLSHNIDTIGQMSCN--PSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQF 81 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~~~~~G~~~cn--~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~ 81 (637)
+++||+|||||.+|+++|++|.+.|.. ++++|++....|...-+ ++...... .....-...++
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p--------------~~~~~~~~~p~ 72 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSP--------------KWLLGFPFLPF 72 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCc--------------hheeccCCCcc
Confidence 468999999999999999999999998 99999985433331111 11100000 00000011111
Q ss_pred eeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCe-EE-EcceeEEEEEe-CCeEEEEEEecceE--EEeceEEEecc
Q psy9395 82 RILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL-YL-FQEEVDDLIIK-TNKILGVVTKIGIK--FFSKTVILTTG 156 (637)
Q Consensus 82 ~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv-~i-~~~~V~~i~~~-~~~v~gV~~~~g~~--i~a~~VIlAtG 156 (637)
. ++. ..-+.......+...++.+... .+ +++.|..+..+ +++.+.|.+.++.. +.||.||+|||
T Consensus 73 ~------~~~-----~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG 141 (443)
T COG2072 73 R------WDE-----AFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATG 141 (443)
T ss_pred C------Ccc-----cCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeec
Confidence 0 000 0001112455555666653322 22 35555555443 33467788887744 56999999999
Q ss_pred cccCC
Q psy9395 157 TFLNG 161 (637)
Q Consensus 157 ~~~~~ 161 (637)
.+...
T Consensus 142 ~~~~P 146 (443)
T COG2072 142 HLSEP 146 (443)
T ss_pred CCCCC
Confidence 86443
No 220
>KOG1399|consensus
Probab=98.44 E-value=1.4e-06 Score=95.10 Aligned_cols=137 Identities=22% Similarity=0.232 Sum_probs=81.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||+|||.||..|.+.|+.|+++||....+|.....+... .....+.+.+.- .....++.....
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~-~~~ss~Y~~l~t--n~pKe~~~~~df------- 76 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE-VVHSSVYKSLRT--NLPKEMMGYSDF------- 76 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc-ccccchhhhhhc--cCChhhhcCCCC-------
Confidence 6999999999999999999999999999999854444433221111 000011111110 000111111111
Q ss_pred ccCchhhh-hhhccCHHHHHHHHHHHHHhcCCe--EE-EcceeEEEEEeC-CeEEEEEEecc----eEEEeceEEEeccc
Q psy9395 87 SKGAAVRA-TRAQVDRILYKQAIRFYLENQLNL--YL-FQEEVDDLIIKT-NKILGVVTKIG----IKFFSKTVILTTGT 157 (637)
Q Consensus 87 ~~gp~~~~-~~~~~d~~~~~~~l~~~l~~~~gv--~i-~~~~V~~i~~~~-~~v~gV~~~~g----~~i~a~~VIlAtG~ 157 (637)
|.... ++...+...+.+.|+..++. .++ .+ ++++|..+...+ |. +.|.+.++ ...-+|.||+|||-
T Consensus 77 ---pf~~~~~~~~p~~~e~~~YL~~yA~~-F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh 151 (448)
T KOG1399|consen 77 ---PFPERDPRYFPSHREVLEYLRDYAKH-FDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGH 151 (448)
T ss_pred ---CCcccCcccCCCHHHHHHHHHHHHHh-cChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccC
Confidence 22111 22234455788888888886 444 23 577788886655 44 55666443 47788999999999
Q ss_pred c
Q psy9395 158 F 158 (637)
Q Consensus 158 ~ 158 (637)
+
T Consensus 152 ~ 152 (448)
T KOG1399|consen 152 Y 152 (448)
T ss_pred c
Confidence 7
No 221
>PRK09897 hypothetical protein; Provisional
Probab=98.44 E-value=4.5e-06 Score=93.60 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=77.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCC--CcEEEEccCCCCCCcc---------cccCCCC-ccchhhHHHHHHHhccH-HHHH
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMG--QKTLLLSHNIDTIGQM---------SCNPSIG-GIGKSHLVKEIDAMGGI-MAIA 73 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~~~~G~~---------~cn~s~g-g~~~~~l~~el~~~gg~-~~~~ 73 (637)
++|+|||||++|+++|.+|++.+ .+|+|+|++. ..|.+ .|+..+. ..........+..|... ...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~-~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD-EAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC-CCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 58999999999999999998865 4899999963 34432 1111000 00000000111111110 0112
Q ss_pred HhhcCCeEeeeccccCchhhhhhhccC---HHHHHHHHHHHHHhcC-CeEEE-cceeEEEEEeCCeEEEEEEec-ceEEE
Q psy9395 74 TDKSGIQFRILNSSKGAAVRATRAQVD---RILYKQAIRFYLENQL-NLYLF-QEEVDDLIIKTNKILGVVTKI-GIKFF 147 (637)
Q Consensus 74 ~~~~gi~~~~l~~~~gp~~~~~~~~~d---~~~~~~~l~~~l~~~~-gv~i~-~~~V~~i~~~~~~v~gV~~~~-g~~i~ 147 (637)
.+..++....++...+ .+|..+. .+.+.. +.+.+.+.+ .+.++ +++|+++..+++++ .|.+.+ +..+.
T Consensus 81 ~~~~g~~~~~l~~~~f----~PR~l~G~YL~~~f~~-l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~-~V~t~~gg~~i~ 154 (534)
T PRK09897 81 LQRYGVKKETLHDRQF----LPRILLGEYFRDQFLR-LVDQARQQKFAVAVYESCQVTDLQITNAGV-MLATNQDLPSET 154 (534)
T ss_pred HHhcCCcceeecCCcc----CCeecchHHHHHHHHH-HHHHHHHcCCeEEEEECCEEEEEEEeCCEE-EEEECCCCeEEE
Confidence 2334444433332111 2232222 122222 233333322 36664 77999998777654 466644 47899
Q ss_pred eceEEEecccc
Q psy9395 148 SKTVILTTGTF 158 (637)
Q Consensus 148 a~~VIlAtG~~ 158 (637)
||.||+|||..
T Consensus 155 aD~VVLAtGh~ 165 (534)
T PRK09897 155 FDLAVIATGHV 165 (534)
T ss_pred cCEEEECCCCC
Confidence 99999999985
No 222
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.41 E-value=2e-06 Score=81.14 Aligned_cols=138 Identities=18% Similarity=0.195 Sum_probs=74.1
Q ss_pred EEECcchHHHHHHHHHhhC-----CCcEEEEccCCCCCC-cccccCCCCccchhhHH----HHHHHhc----cHHHHHHh
Q psy9395 10 IVVGGGHAGTEAALVSARM-----GQKTLLLSHNIDTIG-QMSCNPSIGGIGKSHLV----KEIDAMG----GIMAIATD 75 (637)
Q Consensus 10 iVIGgG~AGl~AA~~lA~~-----G~~V~LiE~~~~~~G-~~~cn~s~gg~~~~~l~----~el~~~g----g~~~~~~~ 75 (637)
+|||||++|++++.+|.+. ..+|+|+|+.. . | .+.-.+. ....++. ..+..+. ..+..|..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~-~-G~G~~~~~~---~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~ 75 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP-F-GAGGAYRPD---QPPSHLLNTPADQMSLFPDDPGDDFVDWLR 75 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-c-cccccCCCC---CChHHhhcccccccccccccCCCCHHHHHH
Confidence 5999999999999999887 56899999953 3 3 1111110 0000111 0011111 22344544
Q ss_pred hcCCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhc-CCeEE--EcceeEEEEEeCCeEEEEEEecceEEEeceEE
Q psy9395 76 KSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQ-LNLYL--FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVI 152 (637)
Q Consensus 76 ~~gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~-~gv~i--~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VI 152 (637)
..+-+- .....+..+.+|..+.. -+.+.+...+... .++.+ +..+|++|...+++ ..|.+.+|..+.+|.||
T Consensus 76 ~~~~~~---~~~~~~~~f~pR~~~G~-YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~Vv 150 (156)
T PF13454_consen 76 ANGADE---AEEIDPDDFPPRALFGE-YLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRADAVV 150 (156)
T ss_pred hcCccc---ccccccccCCCHHHHHH-HHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeCEEE
Confidence 443200 00001111223332221 1112222222221 34444 58899999887776 46788889999999999
Q ss_pred Eeccc
Q psy9395 153 LTTGT 157 (637)
Q Consensus 153 lAtG~ 157 (637)
+|||.
T Consensus 151 La~Gh 155 (156)
T PF13454_consen 151 LATGH 155 (156)
T ss_pred ECCCC
Confidence 99995
No 223
>KOG4254|consensus
Probab=98.39 E-value=6.4e-06 Score=87.11 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 103 LYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 103 ~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.+..++.+.++++++-.+.+.+|.+|..++|+++||.+.||+.++++.||--++.|
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence 45677778888854444469999999999999999999999999998887777776
No 224
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.39 E-value=5.8e-06 Score=94.26 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=35.6
Q ss_pred cccccCCCCEEEEEeec-CCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9395 357 SLETKQIHGLFFAGQIN-GTTGYEEAASQGLLAGLNAALFSQDRDP 401 (637)
Q Consensus 357 tlesk~v~gLf~aGei~-G~~Gy~eA~a~G~~AG~naa~~~~~~~~ 401 (637)
+++| .+||+|++||+. |..-..+|.++|..||.++++++.|++.
T Consensus 404 ~~~t-s~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g~~~ 448 (564)
T PRK12771 404 FMMT-GRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGGEPY 448 (564)
T ss_pred CccC-CCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5665 499999999994 3444459999999999999999987653
No 225
>KOG4716|consensus
Probab=98.37 E-value=5.2e-06 Score=84.64 Aligned_cols=141 Identities=22% Similarity=0.318 Sum_probs=79.1
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC-CCCCc-----ccccCCCCccchhhHHHHHHHhccHHHHHHhhcC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI-DTIGQ-----MSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSG 78 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~-~~~G~-----~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~g 78 (637)
.+||.||||||.+|++||-.+|..|++|.++|--. .+.|. +.|. ..|.+.+ .++.....+|.. .+-++..|
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCv-NVGCIPK-KLMHQAallG~a-l~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCV-NVGCIPK-KLMHQAALLGEA-LHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceee-ecccccH-HHHHHHHHHHHH-HHHHHhhC
Confidence 46999999999999999999999999999999532 22222 1221 1222222 333333333322 22233333
Q ss_pred CeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeE---EEcceeEEEE-----EeCCeEEEEEEecc--eEEEe
Q psy9395 79 IQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLY---LFQEEVDDLI-----IKTNKILGVVTKIG--IKFFS 148 (637)
Q Consensus 79 i~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~---i~~~~V~~i~-----~~~~~v~gV~~~~g--~~i~a 148 (637)
... + ......|+..+.+.+++.++...-+. +.+..|.-+. .+..++. .+...| +.+.|
T Consensus 95 W~~--------~---e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~-at~~~gk~~~~ta 162 (503)
T KOG4716|consen 95 WNV--------D---EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIK-ATNKKGKERFLTA 162 (503)
T ss_pred CCC--------c---cccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEE-EecCCCceEEeec
Confidence 322 1 11223566778888998888743222 2233443331 1112221 222233 57899
Q ss_pred ceEEEecccccC
Q psy9395 149 KTVILTTGTFLN 160 (637)
Q Consensus 149 ~~VIlAtG~~~~ 160 (637)
+.+|+|||..++
T Consensus 163 ~~fvIatG~RPr 174 (503)
T KOG4716|consen 163 ENFVIATGLRPR 174 (503)
T ss_pred ceEEEEecCCCC
Confidence 999999999644
No 226
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.36 E-value=1.4e-05 Score=86.51 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc--eEEEeceEEEecccc
Q psy9395 102 ILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 102 ~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~ 158 (637)
..+.++|.+.+++ .|++++ +++|.++..+++++.+|.+.++ ..++||.||+|||+|
T Consensus 263 ~RL~~aL~~~~~~-~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQ-LGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHH-CCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 3567778888887 566665 6799999988888888887765 589999999999998
No 227
>KOG2415|consensus
Probab=98.34 E-value=1.6e-06 Score=90.46 Aligned_cols=151 Identities=17% Similarity=0.253 Sum_probs=83.1
Q ss_pred CcccEEEECcchHHHHHHHHHhh------CCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSAR------MGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSG 78 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~------~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~g 78 (637)
..+||+|||||+||++||+.|.+ ...+|+|+|+.....|......-+.-.+..++.......+....... ..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~v--T~ 152 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPV--TS 152 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccc--cc
Confidence 45899999999999999998865 35789999998544443211000000011111111111111000000 00
Q ss_pred CeEeeeccc-cC--chhhh----hhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEE-eCCeEEEEEEec-------
Q psy9395 79 IQFRILNSS-KG--AAVRA----TRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLII-KTNKILGVVTKI------- 142 (637)
Q Consensus 79 i~~~~l~~~-~g--p~~~~----~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~-~~~~v~gV~~~~------- 142 (637)
-.+..|..+ .. |..+. ....+.-..+..+|-+.+++ .|++++ ...+.+++. ++|.|.||.|.|
T Consensus 153 d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe-~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G 231 (621)
T KOG2415|consen 153 DKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEE-LGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDG 231 (621)
T ss_pred cceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHh-hCceeccccchhheeEcCCCcEeeEeeccccccCCC
Confidence 112222211 00 11111 11123334677888888887 799998 566777765 467789988854
Q ss_pred --------ceEEEeceEEEecccc
Q psy9395 143 --------GIKFFSKTVILTTGTF 158 (637)
Q Consensus 143 --------g~~i~a~~VIlAtG~~ 158 (637)
|-.++|+..|.|-|.-
T Consensus 232 ~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 232 APKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred CccccccccceecceeEEEecccc
Confidence 2368888899998873
No 228
>KOG2844|consensus
Probab=98.33 E-value=2.6e-06 Score=93.68 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=95.1
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEE-EEccCCCCCC-ccc----ccC-CCCcc-------chhhHHHHHHHhccH--
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTL-LLSHNIDTIG-QMS----CNP-SIGGI-------GKSHLVKEIDAMGGI-- 69 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~-LiE~~~~~~G-~~~----cn~-s~gg~-------~~~~l~~el~~~gg~-- 69 (637)
..||+|||||.+|+.+|++||++|.++. ++|+..-..| ... |.. -.... ....+.+++..-.++
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~t 118 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLHT 118 (856)
T ss_pred cccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3799999999999999999999999944 4454321111 111 100 00000 001122222221100
Q ss_pred ----------------------HHHHHhhcCCeEeeecc----ccCc---------hhhhhh-hccCHHHHHHHHHHHHH
Q psy9395 70 ----------------------MAIATDKSGIQFRILNS----SKGA---------AVRATR-AQVDRILYKQAIRFYLE 113 (637)
Q Consensus 70 ----------------------~~~~~~~~gi~~~~l~~----~~gp---------~~~~~~-~~~d~~~~~~~l~~~l~ 113 (637)
+......+|++.+.+.. ..+| +.+.|. ..+|+..+.+++...+.
T Consensus 119 Gwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~ 198 (856)
T KOG2844|consen 119 GWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAAS 198 (856)
T ss_pred ceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHHH
Confidence 11112234555555431 1122 223333 26889999999999998
Q ss_pred hcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 114 NQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 114 ~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
+ .|+.+ .++.|++|..+.+++.+|.|..| .+++..||-|||-|.+
T Consensus 199 ~-~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 199 A-LGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred h-cCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHH
Confidence 8 56666 58999999988888889999887 6999999999999854
No 229
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.9e-07 Score=91.66 Aligned_cols=110 Identities=28% Similarity=0.406 Sum_probs=73.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCe-Eeee
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQ-FRIL 84 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~-~~~l 84 (637)
.|||+||||||||.+||+.+||.|.++-|+-- ++|... .|..+|. |-..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae---rfGGQv---------------------------ldT~~IENfIsv 260 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE---RFGGQV---------------------------LDTMGIENFISV 260 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhh---hhCCee---------------------------ccccchhheecc
Confidence 49999999999999999999999999877742 222210 0111110 0000
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEE--eCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLII--KTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~--~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
|. .+...+..++.+.++. ..+.+. -.+++++.. ..+....|.+.+|..++++.||+|||+.
T Consensus 261 -----~~-------teGpkl~~ale~Hv~~-Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 261 -----PE-------TEGPKLAAALEAHVKQ-YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred -----cc-------ccchHHHHHHHHHHhh-cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 21 1223466777777776 567775 345666654 2345677999999999999999999983
No 230
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.32 E-value=9.5e-06 Score=67.26 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=59.4
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecccc
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSSK 88 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~~ 88 (637)
|+|||||..|+++|..+++.|.+|+|+++.+. +..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~-~~~-------------------------------------------- 36 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDR-LLP-------------------------------------------- 36 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSS-SST--------------------------------------------
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccch-hhh--------------------------------------------
Confidence 89999999999999999999999999998632 110
Q ss_pred CchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecc
Q psy9395 89 GAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIG 143 (637)
Q Consensus 89 gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g 143 (637)
.++ ......+.+.+++ .|+++ +++.+.++..+++++. |.+.||
T Consensus 37 ---------~~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~~~-V~~~~g 80 (80)
T PF00070_consen 37 ---------GFD-PDAAKILEEYLRK-RGVEVHTNTKVKEIEKDGDGVE-VTLEDG 80 (80)
T ss_dssp ---------TSS-HHHHHHHHHHHHH-TTEEEEESEEEEEEEEETTSEE-EEEETS
T ss_pred ---------hcC-HHHHHHHHHHHHH-CCCEEEeCCEEEEEEEeCCEEE-EEEecC
Confidence 011 1345556666766 69999 5999999988776655 777765
No 231
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.32 E-value=1.1e-06 Score=87.14 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=77.1
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccc---------h-hhHHHHHHHhccHHHHHHhhc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG---------K-SHLVKEIDAMGGIMAIATDKS 77 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~---------~-~~l~~el~~~gg~~~~~~~~~ 77 (637)
+|+|||+|+||++||++|+..|.+|+|+||+....|.+......+|.. + +.+.+.++.+. + .
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~-------~-~ 74 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALR-------D-D 74 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHH-------h-C
Confidence 799999999999999999999999999999855555543322223220 1 11222222221 1 1
Q ss_pred CCeEeeeccccCchhhhhh-----hccCH-----HHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecc-eE
Q psy9395 78 GIQFRILNSSKGAAVRATR-----AQVDR-----ILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIG-IK 145 (637)
Q Consensus 78 gi~~~~l~~~~gp~~~~~~-----~~~d~-----~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g-~~ 145 (637)
|+--.+. |+++..+ .+-+. +--..++.+.+. .++++ ++++|+.+...++ .+.+.+++| ..
T Consensus 75 glV~~W~-----~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA--tdL~V~~~~rVt~v~~~~~-~W~l~~~~g~~~ 146 (331)
T COG3380 75 GLVDVWT-----PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA--TDLTVVLETRVTEVARTDN-DWTLHTDDGTRH 146 (331)
T ss_pred Cceeecc-----ccccccccCCCCCCCCCCccccCcchHHHHHHHh--ccchhhhhhhhhhheecCC-eeEEEecCCCcc
Confidence 2211000 1111000 00000 001223333333 34566 5999999987754 677888665 67
Q ss_pred EEeceEEEecccc
Q psy9395 146 FFSKTVILTTGTF 158 (637)
Q Consensus 146 i~a~~VIlAtG~~ 158 (637)
..+|.||||.-..
T Consensus 147 ~~~d~vvla~PAP 159 (331)
T COG3380 147 TQFDDVVLAIPAP 159 (331)
T ss_pred cccceEEEecCCC
Confidence 8899999998763
No 232
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.27 E-value=4.2e-05 Score=83.52 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecc--eEEEeceEEEeccccc
Q psy9395 103 LYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTFL 159 (637)
Q Consensus 103 ~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~~ 159 (637)
.+.+.+.+.+++ .++++ .+++|.++..+++++..+.+.+| ..+.||.||+|||.+.
T Consensus 260 rL~~aL~~~l~~-~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFER-LGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHh-CCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 456777777776 57777 48999999887777776665554 4699999999999973
No 233
>PRK07233 hypothetical protein; Provisional
Probab=98.27 E-value=1.2e-05 Score=88.18 Aligned_cols=53 Identities=19% Similarity=0.092 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccc
Q psy9395 103 LYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 157 (637)
Q Consensus 103 ~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~ 157 (637)
.+.+.|.+.+.+ .++++ ++++|++|..+++++.++. .++..+.||.||+|+..
T Consensus 199 ~l~~~l~~~l~~-~g~~v~~~~~V~~i~~~~~~~~~~~-~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 199 TLIDALAEAIEA-RGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHh-cCceEEeCCCeeEEEEcCCceEEEE-eCCceEECCEEEECCCH
Confidence 345666666666 45666 6999999988777665554 45678999999999986
No 234
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.26 E-value=1.6e-05 Score=81.06 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc--eEEEeceEEEecccc
Q psy9395 104 YKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 104 ~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~ 158 (637)
+.+.+.+..+..+++..-..+|.+....+++|..|.+.++ ..++|+..|+|||+|
T Consensus 260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 260 LHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSF 316 (421)
T ss_pred HHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccc
Confidence 4567777777756666668899999999999999998875 478999999999997
No 235
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.24 E-value=1.6e-05 Score=88.77 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCeEE-EcceeEEEEEe--C--CeEEEEEEec-c-----eEEEeceEEEecccccCC
Q psy9395 102 ILYKQAIRFYLENQLNLYL-FQEEVDDLIIK--T--NKILGVVTKI-G-----IKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 102 ~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~--~--~~v~gV~~~~-g-----~~i~a~~VIlAtG~~~~~ 161 (637)
+.+...|.+.+++ .|+++ +++.|++|..+ + ++|.+|.... | ....+|.||+|+|++..+
T Consensus 226 eSLV~PL~~~Le~-~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLED-HGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 3566778888888 68888 59999999875 3 5688887752 3 245679999999997443
No 236
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.22 E-value=3.2e-06 Score=95.01 Aligned_cols=140 Identities=18% Similarity=0.111 Sum_probs=75.3
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.|+|||||++|+.||..|.+.|.+|+++|++.+.+|....+.... .+...++ .++.. .+.-....-+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~-~g~~~~y------~sl~~------n~sk~~~~fs 69 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPE-DGRSSVY------DSLHT------NTSKEMMAFS 69 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCC-CSEGGGS------TT-B-------SS-GGGSCCT
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCC-CCccccc------cceEE------eeCchHhcCC
Confidence 699999999999999999999999999999865555443211000 0000000 00000 0000000001
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCe-EE-EcceeEEEEEeCC----eEEEEEEec-c--eEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNL-YL-FQEEVDDLIIKTN----KILGVVTKI-G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv-~i-~~~~V~~i~~~~~----~v~gV~~~~-g--~~i~a~~VIlAtG~~ 158 (637)
.+|.-...........+.+.++..++...-. .+ ++++|+++...++ .-+.|.+.+ | .+-.+|.||+|||.+
T Consensus 70 dfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 70 DFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp TS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 1121001111234567888888888874322 23 5999999976532 235566644 3 244579999999987
Q ss_pred cC
Q psy9395 159 LN 160 (637)
Q Consensus 159 ~~ 160 (637)
..
T Consensus 150 ~~ 151 (531)
T PF00743_consen 150 SK 151 (531)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 237
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.17 E-value=8e-06 Score=87.84 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=67.0
Q ss_pred cEEEECcchHHHHHHHHHhhC---CCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 8 DVIVVGGGHAGTEAALVSARM---GQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~---G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
.|+|||||+||+.+|..+.++ +.+|+|||++.... -..| ... ...+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-~~~~------------~~~--~~~g---------------- 49 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-YSGM------------LPG--MIAG---------------- 49 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-ccch------------hhH--HHhe----------------
Confidence 489999999999999999643 68999999863210 0000 000 0000
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
..+...+...+.+.++. .+++++.++|+.+..++.. |.+.+|+++.+|.+|+|||+..
T Consensus 50 -------------~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~---V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 50 -------------HYSLDEIRIDLRRLARQ-AGARFVIAEATGIDPDRRK---VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred -------------eCCHHHhcccHHHHHHh-cCCEEEEEEEEEEecccCE---EEECCCCcccccEEEEccCCCC
Confidence 01111222223334443 6899888899999876553 6677888899999999999853
No 238
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.13 E-value=6.2e-06 Score=97.96 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=32.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
.++|+|||||+||++||+.|++.|++|+|+|+..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4799999999999999999999999999999863
No 239
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.12 E-value=1.1e-05 Score=89.31 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.3
Q ss_pred cEEEECcchHHHHHHHHHhhCC--CcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG--QKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
+|+|||||+||++||..|++.| .+|+|||++. ..+-..|.. .+.. .
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~-~~~~~~~~~------------------------------~~~~-~ 49 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD-IVSFGACGL------------------------------PYFV-G 49 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC-cceeecCCC------------------------------ceEe-c
Confidence 5999999999999999999875 5899999863 222111110 0000 0
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEE-ecceEEE--eceEEEeccccc
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVT-KIGIKFF--SKTVILTTGTFL 159 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~-~~g~~i~--a~~VIlAtG~~~ 159 (637)
.. .-....+.....+.+.+ .+++++ +++|+++..++..+. +.. .++..+. +|.+|+|||+..
T Consensus 50 ----~~------~~~~~~~~~~~~~~~~~-~gv~~~~~~~V~~id~~~~~v~-~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 50 ----GF------FDDPNTMIARTPEEFIK-SGIDVKTEHEVVKVDAKNKTIT-VKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred ----cc------cCCHHHhhcCCHHHHHH-CCCeEEecCEEEEEECCCCEEE-EEECCCCCEEEecCCEEEECCCCCC
Confidence 00 00001111111223333 588884 889999977665432 322 1255666 999999999963
No 240
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.10 E-value=1.4e-05 Score=87.14 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=65.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC--cEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ--KTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~--~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
.+|+|||||+||++||..|++.|. +|+|+++..... -.+|..+ ..+ +.+ . .
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-y~r~~l~----------~~~--~~~--------~-~----- 56 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-YERPPLS----------KSM--LLE--------D-S----- 56 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-CCCCCCC----------HHH--HCC--------C-C-----
Confidence 589999999999999999999886 799999863211 1111000 000 000 0 0
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
+ ........ +...+ .+++++ ++.|+.+..++.. |.+.+|..+.+|.+|+|||+..
T Consensus 57 -----~---~~~~~~~~--------~~~~~-~~i~~~~g~~V~~id~~~~~---v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 57 -----P---QLQQVLPA--------NWWQE-NNVHLHSGVTIKTLGRDTRE---LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred -----c---cccccCCH--------HHHHH-CCCEEEcCCEEEEEECCCCE---EEECCCCEEEcCEEEEccCCCC
Confidence 0 00000111 11122 688886 6789888765432 5567788899999999999864
No 241
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.08 E-value=4.4e-06 Score=67.05 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=28.5
Q ss_pred EECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 11 VVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 11 VIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
|||||++|++||+.|++.|++|+|+|++....|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 899999999999999999999999999844333
No 242
>KOG0405|consensus
Probab=98.08 E-value=3.4e-05 Score=79.20 Aligned_cols=140 Identities=20% Similarity=0.268 Sum_probs=74.2
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
+.||.+|||||..|+.+|..+|..|++|.|+|......|. |.. .|...+..+|.- ..+...+ +-....|.....+
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGT--CVn-~GCVPKKvm~~~-a~~~~~~-~da~~yG~~~~~~ 93 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGT--CVN-VGCVPKKVMWYA-ADYSEEM-EDAKDYGFPINEE 93 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCce--EEe-eccccceeEEeh-hhhhHHh-hhhhhcCCccccc
Confidence 5699999999999999999999999999999985323332 211 122212112111 0111111 1222344433222
Q ss_pred ccccCchhhhhhhccCHHH----HHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecc--eEEEeceEEEecccc
Q psy9395 85 NSSKGAAVRATRAQVDRIL----YKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~----~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~ 158 (637)
....++.+. -.+.. +...+++.+.+ .++.+++.+..-+ +++.+ .|...+| ..|+|+.+.+|||+.
T Consensus 94 ~~fdW~~ik-----~krdayi~RLngIY~~~L~k-~~V~~i~G~a~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~ 164 (478)
T KOG0405|consen 94 GSFDWKVIK-----QKRDAYILRLNGIYKRNLAK-AAVKLIEGRARFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGR 164 (478)
T ss_pred cCCcHHHHH-----hhhhHHHHHHHHHHHhhccc-cceeEEeeeEEEc--CCCce-EEEecCCeeEEEecceEEEEeCCc
Confidence 222111111 11122 22333334443 5677765544332 23433 3555565 358999999999985
No 243
>KOG2852|consensus
Probab=98.05 E-value=9.2e-06 Score=81.34 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=93.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCC------CcEEEEccCCCCCCcc---------cccCCCCc-cc--hhhHHHHHH-Hhc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMG------QKTLLLSHNIDTIGQM---------SCNPSIGG-IG--KSHLVKEID-AMG 67 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G------~~V~LiE~~~~~~G~~---------~cn~s~gg-~~--~~~l~~el~-~~g 67 (637)
..|+|||||..|+.+|+.|++.+ ..|+|+|+..-..|.. =|.++.-. ++ .-.+.++++ .++
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd 90 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD 90 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence 57999999999999999999987 8899999852111110 02222110 10 012333332 222
Q ss_pred cHH---HHHHhhcCCeEeeec--cccCch---------hh--------hhhhccCHHHHHHHHHHHHHhcCCeEEEccee
Q psy9395 68 GIM---AIATDKSGIQFRILN--SSKGAA---------VR--------ATRAQVDRILYKQAIRFYLENQLNLYLFQEEV 125 (637)
Q Consensus 68 g~~---~~~~~~~gi~~~~l~--~~~gp~---------~~--------~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V 125 (637)
|.- .+..+...+...+.| ..+.|. +. ...+|+++..|...+...+++..+|+++-..|
T Consensus 91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gkv 170 (380)
T KOG2852|consen 91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGKV 170 (380)
T ss_pred CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEeee
Confidence 210 011111111111111 112221 10 12347888999999999999888999998899
Q ss_pred EEEEEeCCeEEEEEEe---c-ceEEEeceEEEecccccCCc
Q psy9395 126 DDLIIKTNKILGVVTK---I-GIKFFSKTVILTTGTFLNGK 162 (637)
Q Consensus 126 ~~i~~~~~~v~gV~~~---~-g~~i~a~~VIlAtG~~~~~~ 162 (637)
.++..+.+++.++... + .....++.+|+|.|.|....
T Consensus 171 ~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskl 211 (380)
T KOG2852|consen 171 KEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKL 211 (380)
T ss_pred EEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhh
Confidence 9987666776666544 2 35667789999999994443
No 244
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.04 E-value=2.2e-05 Score=86.80 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=28.8
Q ss_pred cEEEECcchHHHHHHHHHhhC--CCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARM--GQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~ 38 (637)
+|+|||||+||+.||..+++. +++|+|+|++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 699999999999999999886 6899999996
No 245
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.03 E-value=3.1e-05 Score=87.70 Aligned_cols=48 Identities=27% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc-e---EEEeceEEEeccccc
Q psy9395 112 LENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG-I---KFFSKTVILTTGTFL 159 (637)
Q Consensus 112 l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g-~---~i~a~~VIlAtG~~~ 159 (637)
+.+.+|++++ ++.|++|..++++++||.+.++ . .+.++.||+|+|++-
T Consensus 203 a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 203 AMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAIN 255 (532)
T ss_pred hccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCC
Confidence 3334899995 9999999998888999987543 2 357899999999963
No 246
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.02 E-value=1.2e-05 Score=94.64 Aligned_cols=129 Identities=20% Similarity=0.208 Sum_probs=74.6
Q ss_pred cEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCC--CCcccccCCCCccchhhHHHHHHHhccHHHHHHhh-----cC
Q psy9395 8 DVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDT--IGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDK-----SG 78 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~--~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~-----~g 78 (637)
+|+|||||+||++||+.|++. |++|+|+|++... .|.+ |..+ ....+.++.++......... ..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~G-i~ls------~~~l~~L~~~~~~~~~~~~~~~~~~~~ 74 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWG-VVFS------DATLGNLRAADPVSAAAIGDAFNHWDD 74 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcc-eEcc------HHHHHHHHhcCHHHHHHHHHhcccCCc
Confidence 699999999999999999998 8999999997421 1211 1111 12223333333211111111 11
Q ss_pred CeEeeeccccCchhhhh-hhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecc
Q psy9395 79 IQFRILNSSKGAAVRAT-RAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156 (637)
Q Consensus 79 i~~~~l~~~~gp~~~~~-~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG 156 (637)
+.+.. ..... ...+. ...+.+..+.+.|.+.+.+ .++++ ++++|+++.. ....+|.||.|+|
T Consensus 75 ~~~~~-~g~~~-~~~g~~~~~i~R~~L~~~L~e~a~~-~GV~i~~g~~v~~i~~-------------~~~~~D~VVgADG 138 (765)
T PRK08255 75 IDVHF-KGRRI-RSGGHGFAGIGRKRLLNILQARCEE-LGVKLVFETEVPDDQA-------------LAADADLVIASDG 138 (765)
T ss_pred eEEEE-CCEEE-EECCeeEecCCHHHHHHHHHHHHHH-cCCEEEeCCccCchhh-------------hhcCCCEEEEcCC
Confidence 11111 10000 00011 1246788899999999887 57887 5777766521 0246899999999
Q ss_pred ccc
Q psy9395 157 TFL 159 (637)
Q Consensus 157 ~~~ 159 (637)
..+
T Consensus 139 ~~S 141 (765)
T PRK08255 139 LNS 141 (765)
T ss_pred CCH
Confidence 753
No 247
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.01 E-value=0.00019 Score=77.32 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEec-----ceEEEeceEEEecccc
Q psy9395 99 VDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKI-----GIKFFSKTVILTTGTF 158 (637)
Q Consensus 99 ~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~-----g~~i~a~~VIlAtG~~ 158 (637)
+|-..+.+.+.+.+.+++++.+ ++++|++|...++.-+.|.+.+ ...++|+.|++.+|+.
T Consensus 178 VnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 178 VNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG 243 (488)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH
Confidence 4445667777777888779998 6999999988766556666532 3689999999999984
No 248
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=5e-06 Score=92.98 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccc
Q psy9395 102 ILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 157 (637)
Q Consensus 102 ~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~ 157 (637)
..+.++|.+.+++ .|++| ++++|++|..++++.+++.+.+|..+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~-~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELARE-HGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHH-cCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 3567888888888 66777 5999999999998877787777777889988887766
No 249
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.92 E-value=0.00012 Score=81.37 Aligned_cols=95 Identities=18% Similarity=0.259 Sum_probs=69.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||.+|+++|..+++.|.+|+|+++... +.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~l------------------------------------------- 206 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR-IL------------------------------------------- 206 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC-CC-------------------------------------------
Confidence 4799999999999999999999999999998621 10
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc--eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~ 158 (637)
|. .+ ..+...+.+.+++ .+++++ +++|.++..+++++. +.+.+| .++.+|.||+|+|..
T Consensus 207 ---~~-------~~-~~~~~~~~~~l~~-~gi~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 207 ---PG-------ED-AEVSKVVAKALKK-KGVKILTNTKVTAVEKNDDQVV-YENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred ---CC-------CC-HHHHHHHHHHHHH-cCCEEEeCCEEEEEEEeCCEEE-EEEeCCcEEEEEeCEEEEecCCc
Confidence 00 11 1223344555665 678885 889999977666554 555556 579999999999984
No 250
>KOG3851|consensus
Probab=97.91 E-value=5e-06 Score=84.18 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=34.3
Q ss_pred ccccccCCCCEEEEEeecCCC---CHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9395 356 SSLETKQIHGLFFAGQINGTT---GYEEAASQGLLAGLNAALFSQDRDP 401 (637)
Q Consensus 356 ~tlesk~v~gLf~aGei~G~~---Gy~eA~a~G~~AG~naa~~~~~~~~ 401 (637)
.|||+++.||+|.+||+.++- -+..++||--+--.|.-..++|+.|
T Consensus 317 ~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~p 365 (446)
T KOG3851|consen 317 STLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRP 365 (446)
T ss_pred hhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcCCCc
Confidence 799999999999999997764 3434445555556666667788766
No 251
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.90 E-value=7.7e-05 Score=81.28 Aligned_cols=95 Identities=14% Similarity=0.214 Sum_probs=69.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||..|+++|..|++.|.+|+|+++.....+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR------------------------------------------ 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh------------------------------------------
Confidence 36999999999999999999999999999985211000
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
..+ ..+...+.+.+++ .+++++ ++.|+++.. ++ ...+.+.+|.++.||.||+|+|..
T Consensus 183 -----------~~~-~~~~~~l~~~l~~-~GV~i~~~~~V~~i~~-~~-~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 183 -----------NAP-PPVQRYLLQRHQQ-AGVRILLNNAIEHVVD-GE-KVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred -----------hcC-HHHHHHHHHHHHH-CCCEEEeCCeeEEEEc-CC-EEEEEECCCCEEECCEEEECCCCC
Confidence 000 1233444555555 688885 888988864 33 344677788899999999999984
No 252
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.90 E-value=9.7e-05 Score=79.94 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=70.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||..|+++|..|++.|.+|+++++.....
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------------------------------------- 177 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------------------------------------- 177 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc--------------------------------------------
Confidence 479999999999999999999999999999852110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+. +.+ ......+++.+++ .+++++ ++.|.++..+++. ..+.+.+|.++.+|.||+|+|..
T Consensus 178 ---~~------~~~-~~~~~~l~~~l~~-~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 178 ---AS------LMP-PEVSSRLQHRLTE-MGVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred ---ch------hCC-HHHHHHHHHHHHh-CCCEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCC
Confidence 00 001 1223445555665 688885 8899998765543 45777888899999999999984
No 253
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.89 E-value=9.5e-05 Score=78.74 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=69.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCC-CcEEEEccCCCCC---CcccccCCCCccchhhHHHHHHHhcc-HHHHHHhhcCCe
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMG-QKTLLLSHNIDTI---GQMSCNPSIGGIGKSHLVKEIDAMGG-IMAIATDKSGIQ 80 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~~~~~---G~~~cn~s~gg~~~~~l~~el~~~gg-~~~~~~~~~gi~ 80 (637)
.||+|+||.||++++.|+.|...+ .+++.+|+.+... |.+.......-.-...++...+.-.. -+..++...|--
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 589999999999999999998876 8999999864211 11110000000000000000000000 001111111111
Q ss_pred EeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCC---eEEEEEEe----cceEEEeceEEE
Q psy9395 81 FRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN---KILGVVTK----IGIKFFSKTVIL 153 (637)
Q Consensus 81 ~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~---~v~gV~~~----~g~~i~a~~VIl 153 (637)
+..+| .......+..|.+.++-.+.+..+...++++|++|...++ ..+.|.+. ++.++.|+.||+
T Consensus 82 ~~f~~--------~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVl 153 (341)
T PF13434_consen 82 YEFYN--------RGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVL 153 (341)
T ss_dssp HHHHH--------H--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE
T ss_pred hhhhh--------cCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEE
Confidence 11111 1111234567777777666665543557889999976543 35667773 357999999999
Q ss_pred ecccc
Q psy9395 154 TTGTF 158 (637)
Q Consensus 154 AtG~~ 158 (637)
|||..
T Consensus 154 a~G~~ 158 (341)
T PF13434_consen 154 ATGGQ 158 (341)
T ss_dssp ----E
T ss_pred CcCCC
Confidence 99963
No 254
>PRK06116 glutathione reductase; Validated
Probab=97.85 E-value=0.00017 Score=79.95 Aligned_cols=96 Identities=19% Similarity=0.155 Sum_probs=70.5
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|++.|..+++.|.+|+++++.....
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------- 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------------------- 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc--------------------------------------------
Confidence 369999999999999999999999999999852110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+ .++ ..+...+.+.+++ .+++++ +++|.++..+++....+.+.+|.++.+|.||+|+|..
T Consensus 204 ---~-------~~~-~~~~~~l~~~L~~-~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 204 ---R-------GFD-PDIRETLVEEMEK-KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred ---c-------ccC-HHHHHHHHHHHHH-CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCC
Confidence 0 011 1223444555555 689985 8899999765443234667778889999999999984
No 255
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.85 E-value=0.00017 Score=79.62 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=67.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||.+|+++|..+++.|.+|+|+++.....
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------- 193 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------------------- 193 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC--------------------------------------------
Confidence 369999999999999999999999999999852110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
|. .+ ..+...+.+.+++ .+++++ +++|+++..+++.+. + ..++.++.+|.||+|+|..
T Consensus 194 ---~~-------~~-~~~~~~~~~~l~~-~GI~i~~~~~V~~i~~~~~~v~-v-~~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 194 ---PR-------EE-PSVAALAKQYMEE-DGITFLLNAHTTEVKNDGDQVL-V-VTEDETYRFDALLYATGRK 252 (438)
T ss_pred ---CC-------CC-HHHHHHHHHHHHH-cCCEEEcCCEEEEEEecCCEEE-E-EECCeEEEcCEEEEeeCCC
Confidence 00 01 1223344555555 688885 889999976554432 3 3456789999999999985
No 256
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=0.00018 Score=80.36 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=68.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||.+|+++|..+++.|.+|+|+++.....
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------------------- 216 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------------------- 216 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--------------------------------------------
Confidence 379999999999999999999999999999862110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEE-eCCeEEEEEEecc--eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLII-KTNKILGVVTKIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~-~~~~v~gV~~~~g--~~i~a~~VIlAtG~~ 158 (637)
|. .+ ..+...+.+.+++ .|++++ +++|+++.. +++++..+.+.+| ..+.+|.||+|+|..
T Consensus 217 ---~~-------~~-~~~~~~l~~~l~~-~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 217 ---PT-------ED-AELSKEVARLLKK-LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred ---Cc-------CC-HHHHHHHHHHHHh-cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 00 11 1233445555665 689885 888999864 2344544555566 479999999999984
No 257
>PLN02785 Protein HOTHEAD
Probab=97.84 E-value=0.00016 Score=82.56 Aligned_cols=34 Identities=41% Similarity=0.549 Sum_probs=31.4
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
..||+||||||.|||.+|..|++ +.+|+|||++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 35999999999999999999999 68999999974
No 258
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.82 E-value=0.00022 Score=79.34 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=69.4
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|+++|..+++.|.+|+++++.....
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------- 208 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------------------- 208 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--------------------------------------------
Confidence 369999999999999999999999999999852110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc---eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG---IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g---~~i~a~~VIlAtG~~ 158 (637)
|. .+ ..+...+.+.+++ .++.++ +++|+++..+++.+ .+.+.++ ..+.+|.||+|+|..
T Consensus 209 ---~~-------~~-~~~~~~l~~~l~~-~gV~i~~~~~V~~i~~~~~~v-~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 209 ---PG-------ED-KEISKLAERALKK-RGIKIKTGAKAKKVEQTDDGV-TVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred ---Cc-------CC-HHHHHHHHHHHHH-cCCEEEeCCEEEEEEEeCCEE-EEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 00 11 1233445555655 678885 88999997665543 3555555 679999999999985
No 259
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.81 E-value=5.2e-05 Score=84.22 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=31.5
Q ss_pred cccEEEECcchHHHHHHHHHhh--CCCcEEEEccCCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSAR--MGQKTLLLSHNID 40 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~--~G~~V~LiE~~~~ 40 (637)
..+|+|||||+||++||..|++ .|++|+|+|+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 3689999999999999999987 7999999999743
No 260
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.81 E-value=0.00023 Score=78.97 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=70.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|++.|..+++.|.+|+|+++.....
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------------------- 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------------------- 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------------------
Confidence 369999999999999999999999999999852110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc-eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG-IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g-~~i~a~~VIlAtG~~ 158 (637)
+ .+|. .+.+.+++.+++ .++.++ ++.|+++..+++....+.+.+| ..+.+|.||+|+|..
T Consensus 203 ---~-------~~d~-~~~~~~~~~l~~-~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 203 ---R-------SFDS-MISETITEEYEK-EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred ---c-------ccCH-HHHHHHHHHHHH-cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCC
Confidence 0 0121 234455566665 689985 8899998754433334666667 579999999999984
No 261
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.81 E-value=0.00014 Score=78.73 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=63.7
Q ss_pred ccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
.+|+|||||+||+.||..+.+. ..+|+||++..... -..|..+ +. +.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-y~~~~l~-------~~------~~----------------- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-YNKPDLS-------HV------FS----------------- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-cCcCcCc-------HH------Hh-----------------
Confidence 4899999999999999999875 46899998853110 0000000 00 00
Q ss_pred ccccCchhhhhhhccCHHHHHH-HHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQ-AIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~-~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
.......+.. ...+.+++ .+++++ +++|+++..++.. |.+ ++..+.+|++|+|||+..
T Consensus 52 ------------~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~V~~id~~~~~---v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 52 ------------QGQRADDLTRQSAGEFAEQ-FNLRLFPHTWVTDIDAEAQV---VKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred ------------CCCCHHHhhcCCHHHHHHh-CCCEEECCCEEEEEECCCCE---EEE-CCeEEeCCEEEECCCCCC
Confidence 0001111111 12233333 688885 7899998765542 333 567899999999999863
No 262
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.79 E-value=0.00025 Score=78.89 Aligned_cols=95 Identities=22% Similarity=0.275 Sum_probs=70.4
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|+++|..+++.|.+|+|+++.. .+.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l------------------------------------------- 211 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLL------------------------------------------- 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcC-------------------------------------------
Confidence 369999999999999999999999999999852 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
| .+|+ .+...+.+.+++ .+++++ ++.|+++..+++.+ .+.+.+|..+.+|.||+|+|..
T Consensus 212 ---~-------~~d~-~~~~~l~~~l~~-~gI~v~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 212 ---S-------FLDD-EISDALSYHLRD-SGVTIRHNEEVEKVEGGDDGV-IVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred ---C-------cCCH-HHHHHHHHHHHH-cCCEEEECCEEEEEEEeCCeE-EEEECCCCEEEeCEEEEeecCC
Confidence 0 0111 234455555655 688885 88999987655543 3556677789999999999985
No 263
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.78 E-value=4.6e-05 Score=89.39 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=31.1
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
...|+|||||+||++||+.|+++|++|+|+|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 368999999999999999999999999999985
No 264
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.78 E-value=6e-05 Score=80.80 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=31.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
.+|+|||||++|++||..|++.|++|+++|+..
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 589999999999999999999999999999864
No 265
>KOG2960|consensus
Probab=97.77 E-value=4.1e-05 Score=73.42 Aligned_cols=134 Identities=26% Similarity=0.366 Sum_probs=76.5
Q ss_pred ccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeee
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRIL 84 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l 84 (637)
.||+|||+|.||++|||..+++ ..+|.+||..-.+.|. . -.|| ++...+-. .....-+.++.|+.++..
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG-a---WLGG----QLFSAMvv-RKPAhLFL~EigvpYede 147 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG-A---WLGG----QLFSAMVV-RKPAHLFLQEIGVPYEDE 147 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc-c---cccc----hhhhhhhh-cChHHHHHHHhCCCcccC
Confidence 5999999999999999999854 6899999986322221 1 1122 22221100 011123556777766443
Q ss_pred ccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEEcc-eeEEEEEeCC-----eEEEEEEe------c-c-------e
Q psy9395 85 NSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTN-----KILGVVTK------I-G-------I 144 (637)
Q Consensus 85 ~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~~~-~V~~i~~~~~-----~v~gV~~~------~-g-------~ 144 (637)
.... . .-....|...+...+...||++++++ -|.++....+ ++-||.+. + | .
T Consensus 148 gdYV--V------VKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPN 219 (328)
T KOG2960|consen 148 GDYV--V------VKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPN 219 (328)
T ss_pred CCEE--E------EeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCC
Confidence 2110 0 01112344444444444599999965 5667654422 45555542 1 2 4
Q ss_pred EEEeceEEEeccc
Q psy9395 145 KFFSKTVILTTGT 157 (637)
Q Consensus 145 ~i~a~~VIlAtG~ 157 (637)
++++..||-+||-
T Consensus 220 viea~~vvS~tGH 232 (328)
T KOG2960|consen 220 VIEAAVVVSTTGH 232 (328)
T ss_pred eeeEEEEEEccCC
Confidence 7888888888886
No 266
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.77 E-value=7.8e-05 Score=88.16 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=64.6
Q ss_pred EEEECcchHHHHHHHHHhhC---CCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 9 VIVVGGGHAGTEAALVSARM---GQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~---G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
|+|||||+||+.||..+.+. +++|+||++.+ ..+-.+|..+ . .+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~-~~~y~r~~L~----------~---~l~g----------------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEP-HPNYNRILLS----------S---VLQG----------------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCC-CCCccccccc----------H---HHCC-----------------
Confidence 68999999999999988764 57999999863 2211111100 0 0000
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEeccccc
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFL 159 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~ 159 (637)
..+...+.....+.+++ .+++++ +++|+.|..+.. .|.+.+|..+.+|.+|+|||+..
T Consensus 50 ------------~~~~~~l~~~~~~~~~~-~gv~~~~g~~V~~Id~~~k---~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 50 ------------EADLDDITLNSKDWYEK-HGITLYTGETVIQIDTDQK---QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred ------------CCCHHHccCCCHHHHHH-CCCEEEcCCeEEEEECCCC---EEEECCCcEeeCCEEEECCCCCc
Confidence 00001111111222333 689986 789999976543 26677788899999999999864
No 267
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.75 E-value=0.00035 Score=76.89 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=73.7
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.++|||||..|++.|...++.|.+|+|+|+.....
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL--------------------------------------------- 209 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL--------------------------------------------- 209 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC---------------------------------------------
Confidence 59999999999999999999999999999863111
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecce--EEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGI--KFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~--~i~a~~VIlAtG~~ 158 (637)
| ..| ..+.+.+.+.+++ .++.++ ++.|+.+...++. ..+.+.+|. ++++|.|++|+|-.
T Consensus 210 --p-------~~D-~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 210 --P-------GED-PEISKELTKQLEK-GGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred --C-------cCC-HHHHHHHHHHHHh-CCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCc
Confidence 1 123 2456677777887 788885 8889888766655 557777765 79999999999984
No 268
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.74 E-value=2.8e-05 Score=85.47 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=35.7
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
|++.|||||||+|.+||.+|..|++.|++|+++|++.-.+|
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 34569999999999999999999999999999999843333
No 269
>PRK07208 hypothetical protein; Provisional
Probab=97.72 E-value=4.1e-05 Score=85.57 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=33.9
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
+.||+|||||++|++||+.|+++|++|+|+|+....+|
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 37999999999999999999999999999999744444
No 270
>KOG0042|consensus
Probab=97.70 E-value=2.6e-05 Score=84.26 Aligned_cols=35 Identities=40% Similarity=0.648 Sum_probs=32.8
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
..|||+|||||+.|.-+|+-++-+|++|.|+|++.
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~D 100 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGD 100 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEeccc
Confidence 35999999999999999999999999999999974
No 271
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.69 E-value=0.0004 Score=76.95 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=68.8
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.|+|||||..|+++|..+++.|.+|+++++.....
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------------------- 202 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL--------------------------------------------- 202 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------------------------------------------
Confidence 69999999999999999999999999999852110
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+. ++ ..+...+.+.+++ .++.++ ++.|+++..+++. ..+.+.+|..+.+|.||+|+|..
T Consensus 203 --~~-------~d-~~~~~~l~~~l~~-~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 203 --RG-------FD-DDMRALLARNMEG-RGIRIHPQTSLTSITKTDDG-LKVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred --cc-------cC-HHHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCe-EEEEEcCCcEeecCEEEEeeCCC
Confidence 00 11 1233344555665 688885 8899998754444 34566677789999999999984
No 272
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.69 E-value=0.00046 Score=76.94 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=69.9
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.|+|||||..|++.|..+++.|.+|+++++.....
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------------------- 213 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL--------------------------------------------- 213 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC---------------------------------------------
Confidence 69999999999999999999999999999752110
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
|. .++ .....+.+.+++ .++.++ +++|.++..+++.+ .+.+.+|..+.+|.||+|+|..
T Consensus 214 --~~-------~d~-~~~~~l~~~L~~-~gV~i~~~~~v~~v~~~~~~~-~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 214 --PG-------EDA-DAAEVLEEVFAR-RGMTVLKRSRAESVERTGDGV-VVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred --CC-------CCH-HHHHHHHHHHHH-CCcEEEcCCEEEEEEEeCCEE-EEEECCCcEEEecEEEEeecCC
Confidence 00 111 123445556665 689986 88899987655554 3566678889999999999984
No 273
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.69 E-value=4.7e-05 Score=81.87 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=33.6
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
++||+|||||+||+++|+.|++.|.+|+|+|+....+|
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 37999999999999999999999999999999744344
No 274
>PLN02507 glutathione reductase
Probab=97.66 E-value=0.00044 Score=77.67 Aligned_cols=95 Identities=23% Similarity=0.305 Sum_probs=70.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|++.|..+++.|.+|+|+++.....
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------------------- 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------------------- 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC--------------------------------------------
Confidence 369999999999999999999999999999852110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+ .++. .+...+.+.+++ .+++++ ++.|.++..+++++ .+.+.+|..+.+|.||+|+|..
T Consensus 240 ---~-------~~d~-~~~~~l~~~l~~-~GI~i~~~~~V~~i~~~~~~~-~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 240 ---R-------GFDD-EMRAVVARNLEG-RGINLHPRTNLTQLTKTEGGI-KVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred ---c-------ccCH-HHHHHHHHHHHh-CCCEEEeCCEEEEEEEeCCeE-EEEECCCcEEEcCEEEEeecCC
Confidence 0 0111 234445555665 689985 88999997655543 4566677789999999999973
No 275
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.66 E-value=0.00058 Score=76.05 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=67.5
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||..|+++|..+++.|.+|+|+++.....
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------- 202 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------------------- 202 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--------------------------------------------
Confidence 479999999999999999999999999999852110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe---cceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK---IGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~---~g~~i~a~~VIlAtG~~ 158 (637)
|. .++ .+...+.+.+++ .+++++ +++|+++..+++. ..+.+. ++.++.+|.||+|+|..
T Consensus 203 ---~~-------~d~-~~~~~l~~~l~~-~gV~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 203 ---PR-------EEP-EISAAVEEALAE-EGIEVVTSAQVKAVSVRGGG-KIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred ---Cc-------cCH-HHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEEeECCC
Confidence 00 111 123445555655 689985 8889998765443 334443 23689999999999974
No 276
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.65 E-value=0.00034 Score=82.85 Aligned_cols=98 Identities=21% Similarity=0.306 Sum_probs=72.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|+++|..|++.|.+|+|+++.+. + .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~-l-----------------l-------------------------- 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG-L-----------------M-------------------------- 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc-h-----------------h--------------------------
Confidence 3699999999999999999999999999997521 0 0
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
+ .+++. .....+.+.+++ .|++++ ++.++++.. ++.+.+|.+.+|..+.+|.||+|+|..++
T Consensus 177 ---~------~~ld~-~~~~~l~~~l~~-~GV~v~~~~~v~~i~~-~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 177 ---A------KQLDQ-TAGRLLQRELEQ-KGLTFLLEKDTVEIVG-ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred ---h------hhcCH-HHHHHHHHHHHH-cCCEEEeCCceEEEEc-CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 0 01121 123444555655 688885 888888864 34567788888999999999999997544
No 277
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.64 E-value=0.00043 Score=77.40 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=68.8
Q ss_pred ccEEEECcchHHHHHHHHHhh---CCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEee
Q psy9395 7 FDVIVVGGGHAGTEAALVSAR---MGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRI 83 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~---~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~ 83 (637)
-.|+|||||..|++.|..++. .|.+|+|+++.....
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il----------------------------------------- 226 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL----------------------------------------- 226 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----------------------------------------
Confidence 369999999999999976654 499999999852110
Q ss_pred eccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 84 LNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 84 l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
| .+| ..+.+.+.+.+++ .++.++ ++.|+++..+++....+.+.+|..+.+|.||+|+|..
T Consensus 227 ------~-------~~d-~~~~~~l~~~L~~-~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 227 ------R-------GFD-STLRKELTKQLRA-NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred ------c-------ccC-HHHHHHHHHHHHH-cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence 0 012 1234555666665 688885 8889998755444445666677789999999999985
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.63 E-value=0.0006 Score=75.84 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=66.5
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||.+|+++|..+++.|.+|+|+++.. .+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll------------------------------------------- 206 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLL------------------------------------------- 206 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcC-------------------------------------------
Confidence 369999999999999999999999999999852 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc--eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~ 158 (637)
|. .+ ..+.+.+.+.+++ .+++++ ++.|+++..++..+ .+. .+| ..+.+|.||+|+|..
T Consensus 207 ---~~-------~d-~e~~~~l~~~L~~-~GI~i~~~~~V~~i~~~~~~v-~~~-~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 207 ---PG-------ED-EDIAHILREKLEN-DGVKIFTGAALKGLNSYKKQA-LFE-YEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred ---cc-------cc-HHHHHHHHHHHHH-CCCEEEECCEEEEEEEcCCEE-EEE-ECCceEEEEeCEEEEecCCc
Confidence 00 11 1234455566665 689985 88899986544432 232 233 479999999999974
No 279
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.62 E-value=0.00066 Score=75.64 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=68.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|+++|..+++.|.+|+|+++.....
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------- 208 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------------------- 208 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------------------
Confidence 379999999999999999999999999999752110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe--cc--eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK--IG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~--~g--~~i~a~~VIlAtG~~ 158 (637)
|. .| ..+...+.+.+++ .+++++ ++.|+++..+++.+ .+.+. +| .++.+|.||+|+|..
T Consensus 209 ---~~-------~d-~~~~~~l~~~l~~-~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 209 ---PN-------ED-AEVSKEIAKQYKK-LGVKILTGTKVESIDDNGSKV-TVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred ---Cc-------cC-HHHHHHHHHHHHH-CCCEEEECCEEEEEEEeCCeE-EEEEEecCCCeEEEEeCEEEECcCcc
Confidence 10 11 1233445566665 689985 88999997554433 34433 55 479999999999973
No 280
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.60 E-value=0.00044 Score=75.03 Aligned_cols=97 Identities=30% Similarity=0.316 Sum_probs=72.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||+|.+|+++|..|+++|++|+++|......+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~----------------------------------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL----------------------------------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-----------------------------------------
Confidence 489999999999999999999999999999863211110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEE--EEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILG--VVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~g--V~~~~g~~i~a~~VIlAtG~~ 158 (637)
.. ..+...+.+.++. .++.+ .+..+.++....+.... +...++..+.+|.+++++|..
T Consensus 176 ------------~~-~~~~~~~~~~l~~-~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 176 ------------LD-PEVAEELAELLEK-YGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred ------------hh-HHHHHHHHHHHHH-CCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 00 2245556666666 56888 58899998765554333 466677889999999999985
No 281
>PRK07846 mycothione reductase; Reviewed
Probab=97.59 E-value=0.00069 Score=75.16 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=67.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||..|+++|..+++.|.+|+|+++.....
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------------------- 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------------------- 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--------------------------------------------
Confidence 479999999999999999999999999999852110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
|. +++ .+.+.+.+.++ .++.++ +++|+++..+++.+ .+.+.+|..+.+|.||+|+|..
T Consensus 203 ---~~-------~d~-~~~~~l~~l~~--~~v~i~~~~~v~~i~~~~~~v-~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 203 ---RH-------LDD-DISERFTELAS--KRWDVRLGRNVVGVSQDGSGV-TLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred ---cc-------cCH-HHHHHHHHHHh--cCeEEEeCCEEEEEEEcCCEE-EEEECCCcEeecCEEEEEECCc
Confidence 00 111 12233333332 468874 88999987655543 3666677889999999999985
No 282
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.59 E-value=0.00045 Score=82.06 Aligned_cols=99 Identities=19% Similarity=0.240 Sum_probs=72.9
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.++|||||..|+++|..+++.|.+|+|+++.+...
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll--------------------------------------------- 181 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM--------------------------------------------- 181 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch---------------------------------------------
Confidence 58999999999999999999999999999752100
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeC-CeEEEEEEecceEEEeceEEEecccccCC
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKT-NKILGVVTKIGIKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~-~~v~gV~~~~g~~i~a~~VIlAtG~~~~~ 161 (637)
| .++|. .....+.+.+++ .|++++ +..+.++..++ +....+.+.+|..+.+|.||+|+|..++.
T Consensus 182 --~------~~ld~-~~~~~l~~~L~~-~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 182 --A------EQLDQ-MGGEQLRRKIES-MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred --h------hhcCH-HHHHHHHHHHHH-CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 0 01221 233455666666 689985 88898886432 34556778888899999999999976543
No 283
>KOG3855|consensus
Probab=97.58 E-value=0.0002 Score=75.39 Aligned_cols=192 Identities=18% Similarity=0.158 Sum_probs=96.6
Q ss_pred cccEEEECcchHHHHHHHHHhhC----CCcEEEEccCC-CCCCc--------ccccCCCCccchhhHHHHHHHhccHHHH
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARM----GQKTLLLSHNI-DTIGQ--------MSCNPSIGGIGKSHLVKEIDAMGGIMAI 72 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~----G~~V~LiE~~~-~~~G~--------~~cn~s~gg~~~~~l~~el~~~gg~~~~ 72 (637)
.|||+|||||++|.+.|..+... -++|+|+|... +..+. -+|.+.. .+.-++.+.+.+|...+..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s--~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSIS--PASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCC--cchHHHHHhcCHHHHhhhh
Confidence 69999999999999888888753 47899999761 11111 1121111 1112344444443322210
Q ss_pred HH-hhcCC-eEeeecc-----ccCchhhhhhhccCHHHHHHHHH--HHHHhcCCeEEE-cceeEEEEE-------eCCeE
Q psy9395 73 AT-DKSGI-QFRILNS-----SKGAAVRATRAQVDRILYKQAIR--FYLENQLNLYLF-QEEVDDLII-------KTNKI 135 (637)
Q Consensus 73 ~~-~~~gi-~~~~l~~-----~~gp~~~~~~~~~d~~~~~~~l~--~~l~~~~gv~i~-~~~V~~i~~-------~~~~v 135 (637)
-. ...++ .+..... ...+.-......+....+..++. .......++++. .+.+.++.+ +++-+
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~ 193 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMW 193 (481)
T ss_pred ccccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcce
Confidence 00 00000 0000000 00000000011223333444444 444455789986 667777654 24456
Q ss_pred EEEEEecceEEEeceEEEecccccCCc--eeecccccCCCCccccchHHHHHHHHhcCccceeccc
Q psy9395 136 LGVVTKIGIKFFSKTVILTTGTFLNGK--IHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKT 199 (637)
Q Consensus 136 ~gV~~~~g~~i~a~~VIlAtG~~~~~~--~~ig~~~~~~g~~g~~~~~~l~~~l~~~G~~~~~~~~ 199 (637)
+-+.+.+|..+.+|.+|-|.|..+.++ ..+....|.+.+.|......+.......+....||-+
T Consensus 194 ~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP 259 (481)
T KOG3855|consen 194 FHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLP 259 (481)
T ss_pred EEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCC
Confidence 678888999999999999999864433 2233344445555544444443322233344444443
No 284
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.58 E-value=0.00038 Score=75.39 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=50.3
Q ss_pred hccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccCC
Q psy9395 97 AQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 97 ~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~ 161 (637)
.++|+..+...+.+.+.+ |+++ .++.|+++..++++ +.|.+.+|..++|+.||+|+|.|...
T Consensus 130 g~idp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred cccChHHHHHHHHhccCC--CcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCccccc
Confidence 367888899999988876 6777 48899999876665 56888888779999999999998443
No 285
>PRK06370 mercuric reductase; Validated
Probab=97.58 E-value=0.00084 Score=74.78 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|+++|..+++.|.+|+|+++... +.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-~l------------------------------------------- 207 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR-LL------------------------------------------- 207 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-CC-------------------------------------------
Confidence 3799999999999999999999999999998521 10
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEE--e-cceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVT--K-IGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~--~-~g~~i~a~~VIlAtG~~ 158 (637)
|. .+ ..+.+.+.+.+++ .|++++ +++|.++..+++.+ .+.+ . ++..+.+|.||+|+|..
T Consensus 208 ---~~-------~~-~~~~~~l~~~l~~-~GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 208 ---PR-------ED-EDVAAAVREILER-EGIDVRLNAECIRVERDGDGI-AVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred ---cc-------cC-HHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCEE-EEEEEeCCCceEEEeCEEEECcCCC
Confidence 00 01 1123344555555 789985 88999997655433 2332 2 24579999999999984
No 286
>PLN02576 protoporphyrinogen oxidase
Probab=97.55 E-value=8.9e-05 Score=83.23 Aligned_cols=39 Identities=36% Similarity=0.425 Sum_probs=34.3
Q ss_pred CcccEEEECcchHHHHHHHHHhhC-CCcEEEEccCCCCCCc
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARM-GQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~-G~~V~LiE~~~~~~G~ 44 (637)
.++||+|||||++|++||+.|++. |++|+|+|+.. .+|.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~-rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD-RVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC-CCCC
Confidence 357999999999999999999999 99999999984 4443
No 287
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.55 E-value=0.00068 Score=74.62 Aligned_cols=94 Identities=26% Similarity=0.324 Sum_probs=67.5
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||.+|+++|..+++.|.+|+++++......
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------------------- 174 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------------------- 174 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------------------
Confidence 3799999999999999999999999999998521100
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+. ++ ..+...+.+.+++ .|++++ ++.|.++..+ +.+ +.+.+|.++.+|.||+|+|..
T Consensus 175 ---~~-------~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~-~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 175 ---KL-------FD-EEMNQIVEEELKK-HEINLRLNEEVDSIEGE-ERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred ---cc-------cC-HHHHHHHHHHHHH-cCCEEEeCCEEEEEecC-CCE--EEEcCCCEEEeCEEEECCCcc
Confidence 00 11 1123344555555 688885 8899998643 333 455677889999999999984
No 288
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.54 E-value=0.0001 Score=81.52 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=32.4
Q ss_pred cEEEECcchHHHHHHHHHhhCC--CcEEEEccCCCCCCc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG--QKTLLLSHNIDTIGQ 44 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~~~~G~ 44 (637)
+|+|||||+||++||+.|++.| ++|+|+|+....+|.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 6999999999999999999988 899999998544443
No 289
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.53 E-value=0.001 Score=74.20 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=66.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|++.|..+++.|.+|+|+|+.. .+.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il------------------------------------------- 210 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RIC------------------------------------------- 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCC-------------------------------------------
Confidence 369999999999999999999999999999852 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe---c--ceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK---I--GIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~---~--g~~i~a~~VIlAtG~~ 158 (637)
|. +++ .+...+.+.+++ .++.++ ++.|+++..+++.+ .+... + +..+.+|.||+|+|..
T Consensus 211 ---~~-------~d~-~~~~~l~~~l~~-~gV~i~~~~~V~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 211 ---PG-------TDT-ETAKTLQKALTK-QGMKFKLGSKVTGATAGADGV-SLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred ---CC-------CCH-HHHHHHHHHHHh-cCCEEEECcEEEEEEEcCCeE-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 00 111 123445555665 689985 88999997544443 23322 2 3579999999999973
No 290
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.52 E-value=9.3e-05 Score=83.05 Aligned_cols=56 Identities=13% Similarity=-0.032 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecc-----eEEEeceEEEecccc
Q psy9395 102 ILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIG-----IKFFSKTVILTTGTF 158 (637)
Q Consensus 102 ~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g-----~~i~a~~VIlAtG~~ 158 (637)
..+.++|.+.+++ .|.++ +++.|++|..+++++.+|.+.++ +.+.||.||.++...
T Consensus 232 ~~l~~aL~~~~~~-~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKR-DGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHh-cCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 3567778888877 56677 59999999988887777777654 579999999998873
No 291
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.52 E-value=0.0011 Score=74.22 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=67.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|+++|..+++.|.+|+|+++.. .+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l------------------------------------------- 219 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFL------------------------------------------- 219 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccC-------------------------------------------
Confidence 379999999999999999999999999999852 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec--c--eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI--G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~--g--~~i~a~~VIlAtG~~ 158 (637)
|. .+ ..+...+.+.+++ .++.++ +++|+++..+++.+ .+...+ | ..+.+|.||+|+|..
T Consensus 220 ---~~-------~d-~~~~~~~~~~l~~-~gi~i~~~~~v~~i~~~~~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 220 ---AA-------AD-EQVAKEAAKAFTK-QGLDIHLGVKIGEIKTGGKGV-SVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred ---Cc-------CC-HHHHHHHHHHHHH-cCcEEEeCcEEEEEEEcCCEE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence 00 11 1233444455555 688885 88999997655544 344443 3 579999999999984
No 292
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.00078 Score=72.94 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=72.8
Q ss_pred cccEEEECcchHHHHHHHHHhhC--C-CcEEEEccCCCCCCcccccCCCCccchhhHHH----HHHHh----ccHHHHHH
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARM--G-QKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVK----EIDAM----GGIMAIAT 74 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~--G-~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~----el~~~----gg~~~~~~ 74 (637)
+++|+|||||++|+++|.+|.+. . ..|.|+|+....++...-. .....+++. .+... ...+.+|.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs----~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL 76 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYS----TEEPEHLLNVPAARMSAFAPDIPQDFVRWL 76 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCC----CCCchhhhccccccccccCCCCchHHHHHH
Confidence 36899999999999999999874 2 2399999874333221100 000001100 00111 11123333
Q ss_pred hhcCCeEeee--ccccCchhhhhhhccCHHHHHHHHHHHHHhcC--CeEEEcceeEEEEEe-CCeEEEEEEecceEEEec
Q psy9395 75 DKSGIQFRIL--NSSKGAAVRATRAQVDRILYKQAIRFYLENQL--NLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSK 149 (637)
Q Consensus 75 ~~~gi~~~~l--~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~--gv~i~~~~V~~i~~~-~~~v~gV~~~~g~~i~a~ 149 (637)
....-....- -...++. ..+|..+.. -+.+.+...++... .+.+++++++++..+ ++...-+.+.+|....||
T Consensus 77 ~~~~~~~~d~~~~~~d~~~-y~pR~lfG~-Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad 154 (474)
T COG4529 77 QKQLQRYRDPEDINHDGQA-YPPRRLFGE-YLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIAD 154 (474)
T ss_pred HhcccccCChhhcCCcccc-ccchhHHHH-HHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeee
Confidence 3321100000 0001111 111211111 11222222333222 255568888888665 344555777888899999
Q ss_pred eEEEecccc
Q psy9395 150 TVILTTGTF 158 (637)
Q Consensus 150 ~VIlAtG~~ 158 (637)
.+|+|||.-
T Consensus 155 ~~Vlatgh~ 163 (474)
T COG4529 155 IIVLATGHS 163 (474)
T ss_pred EEEEeccCC
Confidence 999999973
No 293
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.52 E-value=0.0011 Score=73.38 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=67.8
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.|+|||||..|++.|..+++.|.+|+|+++.. .+.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l-------------------------------------------- 194 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFL-------------------------------------------- 194 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCC--------------------------------------------
Confidence 69999999999999999999999999999852 110
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
|. .+ ..+...+.+.+++ .|++++ +++|+++..+++.+ .+.+.++ .+.+|.||+|+|..
T Consensus 195 --~~-------~~-~~~~~~l~~~l~~-~gV~v~~~~~v~~i~~~~~~v-~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 195 --PR-------ED-RDIADNIATILRD-QGVDIILNAHVERISHHENQV-QVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred --CC-------cC-HHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCEE-EEEEcCC-eEEeCEEEEeecCC
Confidence 00 11 1233445566665 689985 88999997655543 3444444 58999999999986
No 294
>KOG0029|consensus
Probab=97.51 E-value=0.0001 Score=82.09 Aligned_cols=38 Identities=39% Similarity=0.539 Sum_probs=34.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~ 44 (637)
..+|||||||+||++||.+|...|.+|+|+|.. +.+|+
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR-dRvGG 52 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR-DRVGG 52 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEecc-CCcCc
Confidence 479999999999999999999999999999987 45543
No 295
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.51 E-value=0.00083 Score=74.29 Aligned_cols=95 Identities=23% Similarity=0.325 Sum_probs=68.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||.+|+++|..+++.|.+|+++++.....
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------- 185 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------------------- 185 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC--------------------------------------------
Confidence 479999999999999999999999999998752110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+. .++ ..+.+.+.+.+++ .+++++ +++|.++.. ++++..+.+.+ ..+.+|.||+|+|..
T Consensus 186 ---~~------~~~-~~~~~~l~~~l~~-~gI~v~~~~~v~~i~~-~~~~~~v~~~~-~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 186 ---PD------SFD-KEITDVMEEELRE-NGVELHLNEFVKSLIG-EDKVEGVVTDK-GEYEADVVIVATGVK 245 (444)
T ss_pred ---ch------hcC-HHHHHHHHHHHHH-CCCEEEcCCEEEEEec-CCcEEEEEeCC-CEEEcCEEEECcCCC
Confidence 00 011 1234455566665 678885 889999853 44455555544 479999999999984
No 296
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.49 E-value=8.7e-05 Score=83.48 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEeccc
Q psy9395 102 ILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 157 (637)
Q Consensus 102 ~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~ 157 (637)
..+.++|.+.+++ .|+++ +++.|++|..+++++++|.+.+|+.+.||.||+|++.
T Consensus 219 ~~l~~al~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAED-LGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHH-CCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcH
Confidence 3567778888877 56777 5999999998888888999988888999999999886
No 297
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.47 E-value=0.00011 Score=81.69 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=33.8
Q ss_pred cccEEEECcchHHHHHHHHHhhC----CCcEEEEccCCCCCCc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARM----GQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~----G~~V~LiE~~~~~~G~ 44 (637)
+.||+|||||+||++||+.|+++ |++|+|+|+....+|.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 36999999999999999999998 9999999998544443
No 298
>PRK14727 putative mercuric reductase; Provisional
Probab=97.46 E-value=0.0011 Score=74.14 Aligned_cols=92 Identities=17% Similarity=0.298 Sum_probs=66.7
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.|+|||||..|++.|..+++.|.+|+|+++. ...
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l--------------------------------------------- 223 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL--------------------------------------------- 223 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC---------------------------------------------
Confidence 6999999999999999999999999999863 110
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+. .|+ .+...+.+.+++ .++.++ ++.|+++..+++.+ .+.+.++ .+.+|.||+|+|..
T Consensus 224 --~~-------~d~-~~~~~l~~~L~~-~GV~i~~~~~V~~i~~~~~~~-~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 224 --FR-------EDP-LLGETLTACFEK-EGIEVLNNTQASLVEHDDNGF-VLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred --Cc-------chH-HHHHHHHHHHHh-CCCEEEcCcEEEEEEEeCCEE-EEEEcCC-eEEeCEEEEccCCC
Confidence 00 111 233445555665 688885 88999987655543 3444444 68999999999986
No 299
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.46 E-value=0.00079 Score=74.44 Aligned_cols=90 Identities=24% Similarity=0.204 Sum_probs=66.1
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.|+|||||..|+++|..+++.|.+|+|+++.. .+.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~-------------------------------------------- 184 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSD-KIN-------------------------------------------- 184 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccc--------------------------------------------
Confidence 69999999999999999999999999999852 110
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+ .+++ .+...+.+.+++ .|+.++ +++|+++. +. .|.+.+|..+.+|.||+|+|..
T Consensus 185 --~-------~~d~-~~~~~l~~~l~~-~gI~i~~~~~v~~i~--~~---~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 185 --K-------LMDA-DMNQPILDELDK-REIPYRLNEEIDAIN--GN---EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred --h-------hcCH-HHHHHHHHHHHh-cCCEEEECCeEEEEe--CC---EEEECCCCEEEeCEEEECcCCC
Confidence 0 0111 233445555665 688885 88998884 22 3556677789999999999984
No 300
>PRK14694 putative mercuric reductase; Provisional
Probab=97.43 E-value=0.0015 Score=72.83 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=66.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|++.|..+++.|.+|+++++. ...
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l-------------------------------------------- 213 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS-RVL-------------------------------------------- 213 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCC--------------------------------------------
Confidence 36999999999999999999999999999863 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
|. .++ .+...+.+.+++ .|+.++ ++.|.++..+++. +.+.+.+ ..+.+|.||+|+|..
T Consensus 214 ---~~-------~~~-~~~~~l~~~l~~-~GI~v~~~~~v~~i~~~~~~-~~v~~~~-~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 214 ---SQ-------EDP-AVGEAIEAAFRR-EGIEVLKQTQASEVDYNGRE-FILETNA-GTLRAEQLLVATGRT 272 (468)
T ss_pred ---CC-------CCH-HHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCE-EEEEECC-CEEEeCEEEEccCCC
Confidence 00 111 233445555665 689885 7889998765543 3344444 479999999999985
No 301
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.42 E-value=0.00086 Score=75.73 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=66.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|+++|..+++.|.+|+|+++.. ..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~-~l-------------------------------------------- 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD-EL-------------------------------------------- 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC-cC--------------------------------------------
Confidence 379999999999999999999999999998741 10
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec---c--eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI---G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~---g--~~i~a~~VIlAtG~~ 158 (637)
. . ...+.+.+++..|+.++ ++.++++..+++++.+|.+.+ | .++.+|.||+|+|..
T Consensus 388 ---~--------~-----~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 388 ---K--------A-----DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred ---C--------h-----hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 0 0 01123334433688885 888988876556776676643 2 479999999999984
No 302
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.42 E-value=0.0014 Score=73.78 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=68.2
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
+++|||||..|++.|..+++.|.+|+|+++. ...
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--------------------------------------------- 217 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL--------------------------------------------- 217 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc---------------------------------------------
Confidence 7999999999999999999999999999863 110
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+ .+|+ .+.+.+.+.+++ .++.++ ++.+..+...++. ..+.+.+|..+.+|.||+|+|..
T Consensus 218 --~-------~~d~-~~~~~l~~~l~~-~GV~i~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 218 --R-------GFDR-QCSEKVVEYMKE-QGTLFLEGVVPINIEKMDDK-IKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred --c-------cCCH-HHHHHHHHHHHH-cCCEEEcCCeEEEEEEcCCe-EEEEECCCCEEEcCEEEEeeCCC
Confidence 0 0111 233455566665 678885 7788888654443 34666678789999999999985
No 303
>PTZ00058 glutathione reductase; Provisional
Probab=97.41 E-value=0.0013 Score=74.68 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=67.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|++.|..+++.|.+|+++++.. .+.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~-~il------------------------------------------- 273 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGN-RLL------------------------------------------- 273 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc-ccc-------------------------------------------
Confidence 469999999999999999999999999999852 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCC-eEEEEEEec-ceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTN-KILGVVTKI-GIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~-~v~gV~~~~-g~~i~a~~VIlAtG~~ 158 (637)
| .+|. .+.+.+.+.+++ .++.++ +..|.++..+++ ++. +...+ +.++.+|.||+|+|..
T Consensus 274 ---~-------~~d~-~i~~~l~~~L~~-~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 274 ---R-------KFDE-TIINELENDMKK-NNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred ---c-------cCCH-HHHHHHHHHHHH-CCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCC
Confidence 0 0121 233445566665 688885 888998875433 332 33333 3579999999999974
No 304
>PLN02676 polyamine oxidase
Probab=97.41 E-value=0.0002 Score=80.11 Aligned_cols=43 Identities=33% Similarity=0.359 Sum_probs=36.0
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCC-cEEEEccCCCCCC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHNIDTIG 43 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~~~~~G 43 (637)
|.....+||+|||||++|++||..|++.|. +|+|+|+....+|
T Consensus 21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 21 MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 444456899999999999999999999998 6999999844334
No 305
>PLN02268 probable polyamine oxidase
Probab=97.38 E-value=0.00019 Score=79.18 Aligned_cols=37 Identities=38% Similarity=0.417 Sum_probs=32.7
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~ 44 (637)
+|+|||||.||++||+.|.+.|++|+|+|+....+|.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 7999999999999999999999999999998444443
No 306
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.37 E-value=0.0017 Score=72.00 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=66.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.++|||||..|++.|..+++.|.+|+++++... +.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~-ll------------------------------------------- 205 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK-LL------------------------------------------- 205 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc-cc-------------------------------------------
Confidence 3699999999999999999999999999998521 10
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+ .+++ .+...+.+.++ .++.++ ++.|+++..+++.+ .+.+.+|..+.+|.||+|+|..
T Consensus 206 ---~-------~~d~-~~~~~l~~~~~--~gI~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 206 ---R-------HLDE-DISDRFTEIAK--KKWDIRLGRNVTAVEQDGDGV-TLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred ---c-------ccCH-HHHHHHHHHHh--cCCEEEeCCEEEEEEEcCCeE-EEEEcCCCEEEcCEEEEeeccC
Confidence 0 0111 11223333332 468885 88999997655543 3556667789999999999985
No 307
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.35 E-value=0.00028 Score=77.70 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=31.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
..|+||||||||+.||+.|++.|+.|+++|+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 579999999999999999999999999999874
No 308
>PLN02546 glutathione reductase
Probab=97.34 E-value=0.0019 Score=73.42 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=66.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||..|++.|..+++.|.+|+|+++.. .+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il------------------------------------------- 288 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVL------------------------------------------- 288 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccc-------------------------------------------
Confidence 379999999999999999999999999999752 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+ .++ ..+...+.+.+++ .|++++ ++.|.++..+++....+.+.++....+|.||+|+|..
T Consensus 289 ---~-------~~d-~~~~~~l~~~L~~-~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 289 ---R-------GFD-EEVRDFVAEQMSL-RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred ---c-------ccC-HHHHHHHHHHHHH-CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 0 011 1233445556665 689985 8889888654333334555555444589999999984
No 309
>PRK10262 thioredoxin reductase; Provisional
Probab=97.33 E-value=0.0017 Score=68.50 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=66.7
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.|+|||+|..|+++|..+++.|.+|+++++... +.
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~-~~-------------------------------------------- 182 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-FR-------------------------------------------- 182 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc-cC--------------------------------------------
Confidence 699999999999999999999999999998521 00
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc------eEEEeceEEEeccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG------IKFFSKTVILTTGT 157 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g------~~i~a~~VIlAtG~ 157 (637)
.+ ..+.+.+.+.+++ .+++++ ++.++++..+++++.+|.+.++ .++.+|.||+|+|.
T Consensus 183 -----------~~-~~~~~~~~~~l~~-~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 183 -----------AE-KILIKRLMDKVEN-GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred -----------CC-HHHHHHHHhhccC-CCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 00 0122334455554 688885 7889998755545666665432 47999999999997
No 310
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.33 E-value=0.0015 Score=71.85 Aligned_cols=89 Identities=25% Similarity=0.310 Sum_probs=65.4
Q ss_pred cEEEECcchHHHHHHHHHhh--------------CCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHH
Q psy9395 8 DVIVVGGGHAGTEAALVSAR--------------MGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIA 73 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~--------------~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~ 73 (637)
.|+|||||++|++.|..++. .|.+|+|+++.....
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------- 223 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------- 223 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------------------
Confidence 69999999999999999875 478999999752110
Q ss_pred HhhcCCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEE
Q psy9395 74 TDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVI 152 (637)
Q Consensus 74 ~~~~gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VI 152 (637)
|. ++ ..+.+.+++.+++ .|++++ ++.|+++. ++. |.+.+|.++.+|.+|
T Consensus 224 ----------------~~-------~~-~~~~~~~~~~L~~-~gV~v~~~~~v~~v~--~~~---v~~~~g~~i~~d~vi 273 (424)
T PTZ00318 224 ----------------GS-------FD-QALRKYGQRRLRR-LGVDIRTKTAVKEVL--DKE---VVLKDGEVIPTGLVV 273 (424)
T ss_pred ----------------cc-------CC-HHHHHHHHHHHHH-CCCEEEeCCeEEEEe--CCE---EEECCCCEEEccEEE
Confidence 00 11 1234455666665 789986 88998885 332 567788899999999
Q ss_pred Eeccc
Q psy9395 153 LTTGT 157 (637)
Q Consensus 153 lAtG~ 157 (637)
.|+|.
T Consensus 274 ~~~G~ 278 (424)
T PTZ00318 274 WSTGV 278 (424)
T ss_pred EccCC
Confidence 99986
No 311
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.32 E-value=0.0023 Score=67.58 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=50.9
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 98 QVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 98 ~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.+++..+...+.+.+.+ .|++++ +++|+++..+++++.+|.+.+| .++||.||+|+|.|
T Consensus 133 ~v~p~~l~~~l~~~~~~-~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 133 HVDPRALLKALEKALEK-LGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAW 192 (337)
T ss_pred eEChHHHHHHHHHHHHH-cCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence 67788899999988887 678885 7899999888888888888777 79999999999998
No 312
>PRK13748 putative mercuric reductase; Provisional
Probab=97.32 E-value=0.0016 Score=74.25 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=67.4
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|++.|..+++.|.+|+|+++.. ..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-------------------------------------------- 305 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-------------------------------------------- 305 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc--------------------------------------------
Confidence 369999999999999999999999999998741 10
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+. .| ..+...+.+.+++ .+++++ ++.|.++..+++.+ .+.+.++ .+.+|.||+|+|..
T Consensus 306 ---~~-------~d-~~~~~~l~~~l~~-~gI~i~~~~~v~~i~~~~~~~-~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 306 ---FR-------ED-PAIGEAVTAAFRA-EGIEVLEHTQASQVAHVDGEF-VLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred ---cc-------cC-HHHHHHHHHHHHH-CCCEEEcCCEEEEEEecCCEE-EEEecCC-eEEeCEEEEccCCC
Confidence 00 11 1233445556665 689885 88999987655543 3544444 69999999999985
No 313
>PRK02106 choline dehydrogenase; Validated
Probab=97.32 E-value=0.00022 Score=81.42 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=38.4
Q ss_pred hcCCeEEE-cceeEEEEEeCCeEEEEEEecc----eEEEeceEEEecccccCC
Q psy9395 114 NQLNLYLF-QEEVDDLIIKTNKILGVVTKIG----IKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 114 ~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g----~~i~a~~VIlAtG~~~~~ 161 (637)
+.+|++++ ++.|++|..+++++.||+..+. ..+.++.||+|+|++...
T Consensus 212 ~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP 264 (560)
T PRK02106 212 KRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSP 264 (560)
T ss_pred CCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCH
Confidence 34889996 9999999998888899887543 246789999999997443
No 314
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.0026 Score=71.02 Aligned_cols=94 Identities=18% Similarity=0.213 Sum_probs=66.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-+|+|||||..|+++|..+++.|.+|+|+++.. .+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il------------------------------------------- 210 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVI------------------------------------------- 210 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCC-------------------------------------------
Confidence 379999999999999999999999999999852 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec--c--eEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI--G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~--g--~~i~a~~VIlAtG~~ 158 (637)
|. +|+ .+...+.+.+++ . +.++ ++.|+.+..+++.+ .+.+.+ + .++.+|.||+|+|..
T Consensus 211 ---~~-------~d~-~~~~~~~~~l~~-~-v~i~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 211 ---PA-------ADK-DIVKVFTKRIKK-Q-FNIMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred ---Cc-------CCH-HHHHHHHHHHhh-c-eEEEcCCEEEEEEEcCCEE-EEEEEeCCCcceEEEeCEEEEeeccc
Confidence 10 121 233445555655 3 7774 88899887655543 344433 2 469999999999984
No 315
>PLN02568 polyamine oxidase
Probab=97.31 E-value=0.00026 Score=79.96 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCC-----CcEEEEccCCCCCC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMG-----QKTLLLSHNIDTIG 43 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G-----~~V~LiE~~~~~~G 43 (637)
|++. ..||+|||||++|++||..|++.| ++|+|+|+....+|
T Consensus 1 ~~~~-~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 1 MVAK-KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCC-CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 5543 479999999999999999999887 89999999744434
No 316
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.30 E-value=0.00028 Score=78.46 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=31.8
Q ss_pred ccEEEECcchHHHHHHHHHhhC------CCcEEEEccCCCCCCc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM------GQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~------G~~V~LiE~~~~~~G~ 44 (637)
.+|+|||||++|++||+.|++. |.+|+|+|+....+|.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 3799999999999999999986 4799999998444443
No 317
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.30 E-value=0.0021 Score=71.95 Aligned_cols=93 Identities=18% Similarity=0.102 Sum_probs=66.2
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
.++|||||..|+++|..+++.|.+|+|+++. .+.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l-------------------------------------------- 215 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILL-------------------------------------------- 215 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec--ccc--------------------------------------------
Confidence 6999999999999999999999999999863 110
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc---eEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG---IKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g---~~i~a~~VIlAtG~~ 158 (637)
|. +|+ .+...+++.+++ .|+.++ ++.+.++...++.+ .|...++ .++.+|.||+|+|-.
T Consensus 216 --~~-------~d~-~~~~~l~~~L~~-~gV~i~~~~~v~~v~~~~~~~-~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 216 --RG-------FDQ-DCANKVGEHMEE-HGVKFKRQFVPIKVEQIEAKV-KVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred --cc-------cCH-HHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeE-EEEEecCCcceEEEeCEEEEEecCC
Confidence 00 111 233445566665 688885 77888886544433 3554444 479999999999974
No 318
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00024 Score=76.16 Aligned_cols=43 Identities=35% Similarity=0.486 Sum_probs=37.0
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCN 48 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn 48 (637)
+..||||||+|.+||.||+.|.+.|++|+|+|.. +..|..+|.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar-~r~GGR~~t 48 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEAR-DRVGGRSLT 48 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEecc-CCcCceeEE
Confidence 4589999999999999999999999999999987 556655443
No 319
>KOG1238|consensus
Probab=97.26 E-value=0.00092 Score=74.67 Aligned_cols=35 Identities=40% Similarity=0.460 Sum_probs=31.6
Q ss_pred CcccEEEECcchHHHHHHHHHhhC-CCcEEEEccCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARM-GQKTLLLSHNI 39 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~-G~~V~LiE~~~ 39 (637)
..||.||||||.|||..|..|++. ..+|+|+|++.
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 469999999999999999999985 57999999874
No 320
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.19 E-value=0.0034 Score=70.91 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=50.8
Q ss_pred hhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec---c--eEEEeceEEEecccc
Q psy9395 96 RAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI---G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 96 ~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~---g--~~i~a~~VIlAtG~~ 158 (637)
..++|+..+...+.+.+.+ .|++++ +++|+++..+++++++|.+.+ | ..++|+.||.|+|.|
T Consensus 122 dg~vdp~~l~~al~~~A~~-~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 122 DGTVDPFRLVAANVLDAQE-HGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred CcEECHHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 3478888888888888877 677775 889999998888888887642 4 479999999999998
No 321
>KOG2403|consensus
Probab=97.18 E-value=0.00067 Score=73.80 Aligned_cols=34 Identities=38% Similarity=0.595 Sum_probs=31.4
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
.||.+|||+|.||+.+|..+++.|..|..+.+-.
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~ 88 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLF 88 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhcCceEEEEeccc
Confidence 3899999999999999999999999999998753
No 322
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.16 E-value=0.0015 Score=70.52 Aligned_cols=91 Identities=23% Similarity=0.272 Sum_probs=66.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCC-------------CcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHH
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMG-------------QKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIA 73 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G-------------~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~ 73 (637)
-+++|||||+.|.+.|..++.+- .+|+|+|+.+ .+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~IL------------------------------ 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RIL------------------------------ 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hhc------------------------------
Confidence 46999999999999999987531 2788888752 110
Q ss_pred HhhcCCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecce-EEEeceE
Q psy9395 74 TDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGI-KFFSKTV 151 (637)
Q Consensus 74 ~~~~gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~-~i~a~~V 151 (637)
|. ++ ..+....++.+++ .||++ +++.|+++.. + +|.+.+|. .|.|+.+
T Consensus 205 ----------------p~-------~~-~~l~~~a~~~L~~-~GV~v~l~~~Vt~v~~--~---~v~~~~g~~~I~~~tv 254 (405)
T COG1252 205 ----------------PM-------FP-PKLSKYAERALEK-LGVEVLLGTPVTEVTP--D---GVTLKDGEEEIPADTV 254 (405)
T ss_pred ----------------cC-------CC-HHHHHHHHHHHHH-CCCEEEcCCceEEECC--C---cEEEccCCeeEecCEE
Confidence 11 11 2345566777777 78999 4999999853 2 26677776 5999999
Q ss_pred EEecccc
Q psy9395 152 ILTTGTF 158 (637)
Q Consensus 152 IlAtG~~ 158 (637)
|-|+|..
T Consensus 255 vWaaGv~ 261 (405)
T COG1252 255 VWAAGVR 261 (405)
T ss_pred EEcCCCc
Confidence 9999984
No 323
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.00048 Score=70.44 Aligned_cols=38 Identities=32% Similarity=0.582 Sum_probs=33.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
+||.+|||+|.+|+..|..|++.|++|+|+|+....+|
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 48999999999999999999999999999999743333
No 324
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00041 Score=75.69 Aligned_cols=37 Identities=30% Similarity=0.301 Sum_probs=32.8
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~ 44 (637)
.|+|+|||.||++||+.||.+|++|+|+|++...+|.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 5999999999999999999999999999998544443
No 325
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.14 E-value=0.0045 Score=68.80 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=65.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||||..|++.|..+++.|.+|+++++.. .+.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l------------------------------------------- 205 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RIL------------------------------------------- 205 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcC-------------------------------------------
Confidence 369999999999999999999999999999852 110
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec--ceEEEeceEEEecccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI--GIKFFSKTVILTTGTF 158 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~--g~~i~a~~VIlAtG~~ 158 (637)
|. .| ..+...+.+.+++ . +.++ ++.|.++..+++..+.+...+ +.++.+|.||+|+|..
T Consensus 206 ---~~-------~d-~~~~~~~~~~l~~-~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 206 ---PL-------ED-PEVSKQAQKILSK-E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred ---cc-------hh-HHHHHHHHHHHhh-c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCc
Confidence 00 11 1234455566665 4 8885 889999865443111222223 3579999999999973
No 326
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.11 E-value=0.00052 Score=76.17 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=30.8
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNID 40 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~ 40 (637)
+|+|||||++|++||+.|++.|++|+|+|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~ 33 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDV 33 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 489999999999999999999999999999743
No 327
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.08 E-value=0.0054 Score=70.84 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=29.6
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|+|||||..|++.|..+++.|.+|+|+|+.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~ 344 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYS 344 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 6999999999999999999999999999985
No 328
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.07 E-value=0.0025 Score=71.97 Aligned_cols=89 Identities=24% Similarity=0.352 Sum_probs=66.2
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
+|+|||||..|+++|..|+..|.+|+|+++... .
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~-l--------------------------------------------- 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE-L--------------------------------------------- 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc-c---------------------------------------------
Confidence 799999999999999999999999999987421 0
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec---c--eEEEeceEEEeccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI---G--IKFFSKTVILTTGT 157 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~---g--~~i~a~~VIlAtG~ 157 (637)
. .+ ..+.+.+.+..|+.++ ++.++++..+++++.++.+.+ | .++.+|.|++|+|.
T Consensus 387 --~--------~~-----~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 387 --K--------AD-----QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred --c--------cc-----HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 0 00 1123334444689985 889999976656777676643 3 46999999999998
No 329
>KOG1336|consensus
Probab=97.07 E-value=0.004 Score=67.21 Aligned_cols=100 Identities=21% Similarity=0.166 Sum_probs=75.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
--|+|||||..|+++|..+...+++|+++++.+.. +
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~-----------------~--------------------------- 249 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL-----------------L--------------------------- 249 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc-----------------h---------------------------
Confidence 35999999999999999999999999999975210 0
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEe-CCeEEEEEEecceEEEeceEEEecccccCC
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~-~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~ 161 (637)
|...+ ..+.+.+...+++ .+++++ ++.+.++... +|++..|.+.+|.++.||.||+.+|..++.
T Consensus 250 ---~~lf~-------~~i~~~~~~y~e~-kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 250 ---PRLFG-------PSIGQFYEDYYEN-KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred ---hhhhh-------HHHHHHHHHHHHh-cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 00000 1234455555665 789995 8888888644 478999999999999999999999986443
No 330
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.04 E-value=0.00062 Score=76.52 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=31.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
|||+|||+|++|+.+|..|++.|++|++||++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~ 33 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGA 33 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccC
Confidence 799999999999999999999999999999874
No 331
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.02 E-value=0.0013 Score=73.39 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=34.5
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM 45 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~ 45 (637)
..+|+|||||+||++||..|++.|++|+++|+.....|.+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l 180 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLL 180 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCcee
Confidence 4689999999999999999999999999999975444443
No 332
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.96 E-value=0.00098 Score=77.90 Aligned_cols=37 Identities=38% Similarity=0.443 Sum_probs=33.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
..+|+|||||++|+.||+.|++.|++|+|+|+.. .+|
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~-r~G 274 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA-RPG 274 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc-cCC
Confidence 4789999999999999999999999999999974 444
No 333
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.94 E-value=0.0043 Score=64.26 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=62.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-.|+|||+|..|+.+|..+++.+.+|+++++... .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~-~-------------------------------------------- 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK-F-------------------------------------------- 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc-c--------------------------------------------
Confidence 3799999999999999999999999999987410 0
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec-----ceEEEeceEEEeccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI-----GIKFFSKTVILTTGT 157 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~-----g~~i~a~~VIlAtG~ 157 (637)
. .. ..+.+.+++..++.++ ++.+.++..++ ++..+.+.+ +.++.+|.||+|+|.
T Consensus 177 ---~--------~~-----~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 177 ---R--------AE-----KILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred ---C--------cC-----HHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 0 00 0122333443488885 88899986443 455555432 357999999999996
No 334
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0007 Score=76.70 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=41.6
Q ss_pred HHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec--c----eEEEeceEEEecccccCCce
Q psy9395 108 IRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI--G----IKFFSKTVILTTGTFLNGKI 163 (637)
Q Consensus 108 l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~--g----~~i~a~~VIlAtG~~~~~~~ 163 (637)
+...+.+.+|+++. ++.|+.|..++++.++|.... + ..+.++.||+|+|++....+
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 33444555999996 899999999999988887753 2 23567899999999755443
No 335
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.94 E-value=0.00081 Score=73.45 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=32.3
Q ss_pred cEEEECcchHHHHHHHHHhhCC--CcEEEEccCCCCCCc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG--QKTLLLSHNIDTIGQ 44 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~~~~G~ 44 (637)
.|+|||||+||++|||.|++.+ ..|+|+|+....+|.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence 4899999999999999999999 999999998444443
No 336
>PLN02529 lysine-specific histone demethylase 1
Probab=96.92 E-value=0.001 Score=77.37 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=32.1
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
..||+|||||+||++||..|+++|++|+|+|+..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 4799999999999999999999999999999874
No 337
>KOG2665|consensus
Probab=96.90 E-value=0.0043 Score=63.35 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=31.7
Q ss_pred CcccEEEECcchHHHHHHHHHhhC--CCcEEEEccCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNI 39 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~ 39 (637)
..||.+|||||..|++.|.++.-+ +.+|.|+|+..
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~ 83 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEK 83 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhh
Confidence 359999999999999999999877 99999999863
No 338
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.85 E-value=0.0047 Score=68.51 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=29.6
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|+|||||..|+.+|..+++.|.+|+++++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 6999999999999999999999999999875
No 339
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.84 E-value=0.0012 Score=73.79 Aligned_cols=54 Identities=9% Similarity=0.157 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCeEE-EcceeEEEEEeC---C--eEEEEEEecc---eEEEeceEEEecccc
Q psy9395 104 YKQAIRFYLENQLNLYL-FQEEVDDLIIKT---N--KILGVVTKIG---IKFFSKTVILTTGTF 158 (637)
Q Consensus 104 ~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~---~--~v~gV~~~~g---~~i~a~~VIlAtG~~ 158 (637)
+.+.+.+.+++ .|.++ +++.|++|..++ + ++++|.+.+| ..+.||.||+|+..+
T Consensus 221 l~~pl~~~L~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 221 LTKPILEYIEA-RGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred HHHHHHHHHHH-CCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 44556777777 56666 599999998754 2 3677777544 568999999999985
No 340
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.80 E-value=0.012 Score=62.84 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=65.4
Q ss_pred cccEEEECcchHHHHHHHHHhhCCC--cEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHH-HHHhhcCCeEe
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQ--KTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMA-IATDKSGIQFR 82 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~--~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~-~~~~~~gi~~~ 82 (637)
...|+|||||.++.+.+..|.+.+. +|.++-+.....-.-.+...+. ......++....+..... +..+...
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne-~f~P~~v~~f~~l~~~~R~~~l~~~~---- 264 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNE-IFSPEYVDYFYSLPDEERRELLREQR---- 264 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHG-GGSHHHHHHHHTS-HHHHHHHHHHTG----
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhh-hcCchhhhhhhcCCHHHHHHHHHHhH----
Confidence 3579999999999999999999875 7999988632111000000000 000111111111111000 0111100
Q ss_pred eeccccCchhhhhhhccCHH----HHHHHHHHHHHhcCCeEEE-cceeEEEEEeC-CeEEEEEEec-----ceEEEeceE
Q psy9395 83 ILNSSKGAAVRATRAQVDRI----LYKQAIRFYLENQLNLYLF-QEEVDDLIIKT-NKILGVVTKI-----GIKFFSKTV 151 (637)
Q Consensus 83 ~l~~~~gp~~~~~~~~~d~~----~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~-~~v~gV~~~~-----g~~i~a~~V 151 (637)
. .....++.+ .|.....+.+.....+.+. +++|+++...+ +++ .+.+.+ ...+.+|.|
T Consensus 265 ------~----~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D~V 333 (341)
T PF13434_consen 265 ------H----TNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVDAV 333 (341)
T ss_dssp ------G----GTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEESEE
T ss_pred ------h----hcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecCEE
Confidence 0 011123333 3444445555554567786 78999998776 343 355543 258899999
Q ss_pred EEeccc
Q psy9395 152 ILTTGT 157 (637)
Q Consensus 152 IlAtG~ 157 (637)
|+|||-
T Consensus 334 ilATGy 339 (341)
T PF13434_consen 334 ILATGY 339 (341)
T ss_dssp EE---E
T ss_pred EEcCCc
Confidence 999994
No 341
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.72 E-value=0.011 Score=63.60 Aligned_cols=88 Identities=20% Similarity=0.279 Sum_probs=60.9
Q ss_pred cEEEECcchHHHHHHHHHhh----CC--CcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeE
Q psy9395 8 DVIVVGGGHAGTEAALVSAR----MG--QKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQF 81 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~----~G--~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~ 81 (637)
.|+|||||.+|+++|..+++ .| .+|+|+... ...
T Consensus 147 ~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~--~~l-------------------------------------- 186 (364)
T TIGR03169 147 RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGA--SLL-------------------------------------- 186 (364)
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCC--ccc--------------------------------------
Confidence 79999999999999999985 34 478888321 110
Q ss_pred eeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEeccc
Q psy9395 82 RILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 157 (637)
Q Consensus 82 ~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~ 157 (637)
+. ++ ..+...+.+.+++ .+++++ ++.|.++. ++ .|.+.+|.++.+|.||+|+|.
T Consensus 187 --------~~-------~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 187 --------PG-------FP-AKVRRLVLRLLAR-RGIEVHEGAPVTRGP--DG---ALILADGRTLPADAILWATGA 241 (364)
T ss_pred --------cc-------CC-HHHHHHHHHHHHH-CCCEEEeCCeeEEEc--CC---eEEeCCCCEEecCEEEEccCC
Confidence 00 00 1123444555665 789985 77888874 33 366677889999999999997
No 342
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.72 E-value=0.0046 Score=69.94 Aligned_cols=97 Identities=25% Similarity=0.381 Sum_probs=70.0
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecccc
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSSK 88 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~~ 88 (637)
.+|||||.-|++||..|...|.+|.++...+ . .+-+
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~----------------lMer--------------------------- 183 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-T----------------LMER--------------------------- 183 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecc-h----------------HHHH---------------------------
Confidence 5899999999999999999999999997641 1 1111
Q ss_pred CchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccCC
Q psy9395 89 GAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 89 gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~ 161 (637)
|.|+. -...|++.+++ .|+.++ +.....+.- ++++.++.+.||..+.||.||.|+|-.++.
T Consensus 184 ---------QLD~~-ag~lL~~~le~-~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 184 ---------QLDRT-AGRLLRRKLED-LGIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPADLVVMAVGIRPND 245 (793)
T ss_pred ---------hhhhH-HHHHHHHHHHh-hcceeecccchhhhhc-CcceeeEeecCCCcccceeEEEeccccccc
Confidence 22221 12334555555 677774 665555543 567888999999999999999999986553
No 343
>PLN02487 zeta-carotene desaturase
Probab=96.67 E-value=0.002 Score=73.14 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=33.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
.+|+|||||++|+++|+.|++.|++|+|+|+.....|
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG 112 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCC
Confidence 5899999999999999999999999999999754433
No 344
>PLN02612 phytoene desaturase
Probab=96.59 E-value=0.0024 Score=72.86 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCeEE-EcceeEEEEEe-CCeEEEEEEecceEEEeceEEEeccc
Q psy9395 104 YKQAIRFYLENQLNLYL-FQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTGT 157 (637)
Q Consensus 104 ~~~~l~~~l~~~~gv~i-~~~~V~~i~~~-~~~v~gV~~~~g~~i~a~~VIlAtG~ 157 (637)
+.+.+.+.+++ .|.++ +++.|++|..+ ++.+++|.+.+|+.+.||.||+|+..
T Consensus 310 l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 310 LCMPIVDHFQS-LGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHh-cCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 34555555555 46666 69999999874 45567788888889999999999865
No 345
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.57 E-value=0.003 Score=69.69 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=31.2
Q ss_pred ccEEEECcchHHHHHHHHH-hhCCCcEEEEccCCCCCC
Q psy9395 7 FDVIVVGGGHAGTEAALVS-ARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~l-A~~G~~V~LiE~~~~~~G 43 (637)
..|+|||||+||+.||..+ ++.|++|+|+|+.+..+|
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 5799999999999999975 567999999999754443
No 346
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.55 E-value=0.014 Score=65.23 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=26.9
Q ss_pred cEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
.|+|||||..|+.+|..+.+.|. +|++++..
T Consensus 283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 69999999999999999999886 68877653
No 347
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.50 E-value=0.016 Score=64.40 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=33.6
Q ss_pred cccccCCCCEEEEEeecCC-CCHHHHHHHHHHHHHHHHHHhCCCC
Q psy9395 357 SLETKQIHGLFFAGQINGT-TGYEEAASQGLLAGLNAALFSQDRD 400 (637)
Q Consensus 357 tlesk~v~gLf~aGei~G~-~Gy~eA~a~G~~AG~naa~~~~~~~ 400 (637)
+++|. +||+|++||+.+. .-...|..+|..||.++.+++.|+.
T Consensus 412 ~~~Ts-~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 412 TGRTS-LPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred CCccC-CCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34454 7999999999743 2344899999999999999887754
No 348
>PRK12831 putative oxidoreductase; Provisional
Probab=96.50 E-value=0.019 Score=63.91 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=29.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|+|||||..|+.+|..|++.|.+|+|+.+.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 37999999999999999999999999999874
No 349
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.31 E-value=0.034 Score=63.17 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=35.7
Q ss_pred ccccCccccccCCCCEEEEEee---cCCC-CHH-HHHHHHHHHHHHHHHH
Q psy9395 351 PCNLKSSLETKQIHGLFFAGQI---NGTT-GYE-EAASQGLLAGLNAALF 395 (637)
Q Consensus 351 ~~~l~~tlesk~v~gLf~aGei---~G~~-Gy~-eA~a~G~~AG~naa~~ 395 (637)
...+|.+|||. .|.+|+.||+ .|++ |.. .++-|+.+++.+++..
T Consensus 258 GIvvnd~mqTs-dpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 258 GIVVNDYMQTS-DPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGG 306 (793)
T ss_pred Ceeeccccccc-CCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccC
Confidence 34667899998 9999999999 7877 766 8888888888887543
No 350
>KOG1276|consensus
Probab=96.28 E-value=0.005 Score=65.49 Aligned_cols=40 Identities=35% Similarity=0.453 Sum_probs=32.6
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcE--EEEccCCCCCCccc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKT--LLLSHNIDTIGQMS 46 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V--~LiE~~~~~~G~~~ 46 (637)
.+|+|||||.+|++||++|++++.+| +|+|+.+..+|...
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 58999999999999999999998765 55999854445443
No 351
>PLN03000 amine oxidase
Probab=96.23 E-value=0.0056 Score=71.87 Aligned_cols=38 Identities=34% Similarity=0.416 Sum_probs=33.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
..+|+|||||++|+.||..|++.|++|+|+|+....+|
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 47999999999999999999999999999998744334
No 352
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.17 E-value=0.0078 Score=65.82 Aligned_cols=37 Identities=30% Similarity=0.488 Sum_probs=28.5
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
|+++|||||+|.|..-+..|.+|++.|++|+.+|+|.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~ 37 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRND 37 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC
Confidence 5567999999999999999999999999999999984
No 353
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.15 E-value=0.0051 Score=63.74 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=32.1
Q ss_pred CcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
...+|+|||+|.+|++|||.|+++ ++|+|+|.+...+|
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence 456899999999999999999986 79999998743333
No 354
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.14 E-value=0.021 Score=61.20 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=28.6
Q ss_pred cEEEECcchHHHHHHHHHhhCCCc-EEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQK-TLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~ 38 (637)
.|+|||+|..|+++|..+++.|.+ |+|+++.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 699999999999999999999997 9999874
No 355
>PLN02976 amine oxidase
Probab=96.13 E-value=0.0068 Score=73.81 Aligned_cols=39 Identities=33% Similarity=0.388 Sum_probs=34.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~ 44 (637)
.+||+|||||++|+.||+.|++.|++|+|+|+....+|.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 379999999999999999999999999999987544444
No 356
>KOG3923|consensus
Probab=95.97 E-value=0.015 Score=59.22 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 99 VDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 99 ~d~~~~~~~l~~~l~~~~gv~i~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.+...|...|.+.+.+ .|+++++.+|.++..-. .=.+|.||-|||-|
T Consensus 148 sE~~~ylpyl~k~l~e-~Gvef~~r~v~~l~E~~------------~~~~DVivNCtGL~ 194 (342)
T KOG3923|consen 148 SEGPKYLPYLKKRLTE-NGVEFVQRRVESLEEVA------------RPEYDVIVNCTGLG 194 (342)
T ss_pred ccchhhhHHHHHHHHh-cCcEEEEeeeccHHHhc------------cCCCcEEEECCccc
Confidence 3456788889988887 78999888888874110 02378899999987
No 357
>KOG1335|consensus
Probab=95.88 E-value=0.035 Score=58.34 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=70.7
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeeccc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSS 87 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~~ 87 (637)
..+|||||..|++.+-.-.+.|.+|+++|--. .++.
T Consensus 213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~------------------------------------------- 248 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGG------------------------------------------- 248 (506)
T ss_pred eEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhcc-------------------------------------------
Confidence 58999999999999999999999999999641 1111
Q ss_pred cCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEec---c--eEEEeceEEEecccc
Q psy9395 88 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKI---G--IKFFSKTVILTTGTF 158 (637)
Q Consensus 88 ~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~---g--~~i~a~~VIlAtG~~ 158 (637)
. +|. .+...+++.+.+ .++.+ +++.|.....++++.+.|...+ + ++++||.+.+|+|-.
T Consensus 249 ---~-------mD~-Eisk~~qr~L~k-QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 249 ---V-------MDG-EISKAFQRVLQK-QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred ---c-------cCH-HHHHHHHHHHHh-cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 0 222 345666777776 68888 5999999987665444455433 2 689999999999973
No 358
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.81 E-value=0.082 Score=56.33 Aligned_cols=140 Identities=22% Similarity=0.279 Sum_probs=74.5
Q ss_pred CcccEEEECcchHHHHHHHHHhhCC-CcEEEEccCCCCC--CcccccCCCCccch-hhHHHHHHHh----cc-HHHHHHh
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSARMG-QKTLLLSHNIDTI--GQMSCNPSIGGIGK-SHLVKEIDAM----GG-IMAIATD 75 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~~~~~--G~~~cn~s~gg~~~-~~l~~el~~~----gg-~~~~~~~ 75 (637)
..+|+|.||-||+-++.|+.+...+ .+++.+|+.+..- .+|- .-|..- -.+++++-.+ .. -+.....
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGml----legstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGML----LEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcc----cCCccccccchhhhccccCCCCchHHHHHHH
Confidence 4599999999999999999998865 8899999974321 1110 000000 0011111000 00 0111122
Q ss_pred hcCCeEeeeccccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEe-CCeEEE--EEEecceEEEeceE
Q psy9395 76 KSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIK-TNKILG--VVTKIGIKFFSKTV 151 (637)
Q Consensus 76 ~~gi~~~~l~~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~-~~~v~g--V~~~~g~~i~a~~V 151 (637)
+++--++.++.. ...+.+..|.+.++-.+.. . -.+ ++++|++|... .+.... +++.++.+++|+.+
T Consensus 80 ~h~RLy~Fl~~e--------~f~i~R~Ey~dY~~Waa~~-l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~l 149 (436)
T COG3486 80 EHGRLYEFLNYE--------TFHIPRREYNDYCQWAASQ-L-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNL 149 (436)
T ss_pred HcchHhhhhhhh--------cccccHHHHHHHHHHHHhh-C-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeE
Confidence 222111111111 1124455666666544443 2 223 58888866322 222333 66677789999999
Q ss_pred EEecccc
Q psy9395 152 ILTTGTF 158 (637)
Q Consensus 152 IlAtG~~ 158 (637)
|+++|+-
T Consensus 150 Vlg~G~~ 156 (436)
T COG3486 150 VLGVGTQ 156 (436)
T ss_pred EEccCCC
Confidence 9999984
No 359
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.80 E-value=0.04 Score=62.89 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=29.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|+|||||..|++.|..+++.|.+|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~ 175 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE 175 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeC
Confidence 36999999999999999999999999999985
No 360
>KOG2755|consensus
Probab=95.73 E-value=0.039 Score=55.22 Aligned_cols=30 Identities=40% Similarity=0.602 Sum_probs=26.2
Q ss_pred EEEECcchHHHHHHHHHhhC--CCcEEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARM--GQKTLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~ 38 (637)
.+|||||+||.++|-++|.. ..+|+|+...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 58999999999999999974 6789999864
No 361
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.72 E-value=0.072 Score=63.08 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=29.1
Q ss_pred cEEEECcchHHHHHHHHHhhCCCc-EEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQK-TLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~ 38 (637)
.|+|||||..|+.+|..+.+.|.+ |+|+++.
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 699999999999999999999997 9999874
No 362
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.041 Score=57.13 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=58.3
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
..||+|||||-+|.+||+-||--=..|+|+|=.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~---------------------------------------------- 387 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP---------------------------------------------- 387 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecch----------------------------------------------
Confidence 3589999999999999999998777899998531
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEec
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKI 142 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~ 142 (637)
.+ ...+.+++.+...+|++++ +..-+++.-++.+|.|+...+
T Consensus 388 -----eL----------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d 430 (520)
T COG3634 388 -----EL----------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD 430 (520)
T ss_pred -----hh----------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe
Confidence 00 1234567778888999996 888888876667788876644
No 363
>PRK13984 putative oxidoreductase; Provisional
Probab=95.32 E-value=0.14 Score=59.15 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=25.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC------cEEEEc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ------KTLLLS 36 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~------~V~LiE 36 (637)
-.|+|||||..|+.+|..+++.|. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 379999999999999999998764 567663
No 364
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.31 E-value=0.094 Score=63.34 Aligned_cols=31 Identities=29% Similarity=0.617 Sum_probs=29.2
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
+|+|||||..|+.+|..+.+.|++|+++.+.
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 6999999999999999999999999999874
No 365
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.29 E-value=0.1 Score=63.55 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=62.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
-.|+|||+|..|+.+|..|++.|. .|+|+|... .. .
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~-~~-----------------~------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA-DV-----------------S------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc-ch-----------------h-------------------------
Confidence 369999999999999999999995 578888641 00 0
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEe----cceEEEeceEEEecccccC
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTK----IGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~----~g~~i~a~~VIlAtG~~~~ 160 (637)
+ .+.+.+++ .++.++ ++.|+.+.- ++++.+|.+. ++.++.||.|+++.|-.++
T Consensus 355 ----~----------------~l~~~L~~-~GV~i~~~~~v~~i~g-~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 355 ----P----------------EARAEARE-LGIEVLTGHVVAATEG-GKRVSGVAVARNGGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred ----H----------------HHHHHHHH-cCCEEEcCCeEEEEec-CCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence 0 01223333 678885 777887753 3445556554 3468999999999997544
No 366
>KOG0685|consensus
Probab=95.24 E-value=0.023 Score=61.43 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=31.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCC-CcEEEEccCCCCCCc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMG-QKTLLLSHNIDTIGQ 44 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~~~~~G~ 44 (637)
...|+|||||.||++||-.|-+.| ..|+|+|.. +++|.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~-dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEAS-DRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEec-cccCc
Confidence 357999999999999999999665 589999987 55554
No 367
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.07 E-value=0.18 Score=56.28 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=28.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
-.|+|||||..|+.+|..+.+.|. +|+|+++.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~ 315 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRR 315 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEec
Confidence 369999999999999999999996 69999874
No 368
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.01 E-value=0.16 Score=59.25 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=33.1
Q ss_pred cccccCCCCEEEEEeecCC-CCHHHHHHHHHHHHHHHHHHhCCC
Q psy9395 357 SLETKQIHGLFFAGQINGT-TGYEEAASQGLLAGLNAALFSQDR 399 (637)
Q Consensus 357 tlesk~v~gLf~aGei~G~-~Gy~eA~a~G~~AG~naa~~~~~~ 399 (637)
+++|. +||+|++||+.+. .-..+|.++|..||.++.+++.++
T Consensus 612 ~~~Ts-~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~~ 654 (654)
T PRK12769 612 RYQTS-NPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGVK 654 (654)
T ss_pred CcccC-CCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCcC
Confidence 35654 8999999999543 334599999999999999887653
No 369
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.65 E-value=0.2 Score=60.32 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=27.9
Q ss_pred ccEEEECcchHHHHHHHHHhhC-C-CcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM-G-QKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~-G-~~V~LiE~~ 38 (637)
-.|+|||||..|+.+|..+.+. | .+|+++.+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr 702 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 702 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEcc
Confidence 3699999999999999999887 4 489999875
No 370
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.56 E-value=0.041 Score=51.78 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=28.9
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|.|||||..|.+.|..++..|++|.|+.++
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 799999999999999999999999999985
No 371
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.49 E-value=0.3 Score=56.84 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=28.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
-.|+|||||..|+.+|..+.+.|. +|+|+.+.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 369999999999999999999997 59999874
No 372
>KOG1336|consensus
Probab=94.44 E-value=0.12 Score=56.06 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=34.0
Q ss_pred CCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 116 LNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 116 ~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
.++++ +++.|+.++..... +.+.+|+++..+.+|||||+.
T Consensus 140 ~gIe~~~~t~v~~~D~~~K~---l~~~~Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLASKT---LVLGNGETLKYSKLIIATGSS 180 (478)
T ss_pred cCceEEEcceeEEeeccccE---EEeCCCceeecceEEEeecCc
Confidence 67888 59999999876654 778899999999999999994
No 373
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.36 E-value=1.1 Score=49.33 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=30.6
Q ss_pred ccEEEECcchHHHHHHHHHhhC----CCcEEEEccCCCCCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM----GQKTLLLSHNIDTIG 43 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~----G~~V~LiE~~~~~~G 43 (637)
-++=|||+|.|+++||..|-|- |.+|.++|+....+|
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 4678999999999999999884 679999998744444
No 374
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.25 Score=51.84 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=61.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeecc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNS 86 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~~ 86 (637)
-||+|||||-+.+..|+.|++.+.+|+|+=+....-
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-------------------------------------------- 179 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-------------------------------------------- 179 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC--------------------------------------------
Confidence 489999999999999999999999999997742100
Q ss_pred ccCchhhhhhhccCHHHHHHHHHHHHHhcCCeEE-EcceeEEEEEeCCeEEEEEEecc----eEEEeceEEEeccc
Q psy9395 87 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIG----IKFFSKTVILTTGT 157 (637)
Q Consensus 87 ~~gp~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i-~~~~V~~i~~~~~~v~gV~~~~g----~~i~a~~VIlAtG~ 157 (637)
-...+.+.+++.+++.+ +++.+.++.-++ +.+|...+. ..+.++.|.++.|.
T Consensus 180 -----------------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 180 -----------------AEEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGH 236 (305)
T ss_pred -----------------cCHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCC
Confidence 01223444444467887 488898886433 556666653 35666777777776
No 375
>KOG0399|consensus
Probab=94.12 E-value=0.076 Score=62.44 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=33.6
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCc
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~ 44 (637)
...|.|||+|+||++||-+|-+.|+.|+++|+. +..|.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~-dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERS-DRVGG 1822 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEec-CCcCc
Confidence 367999999999999999999999999999997 44443
No 376
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.09 E-value=0.41 Score=53.70 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=27.3
Q ss_pred cEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
.|+|||||..|+.+|..+.+.|. .|++++..
T Consensus 285 ~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~ 316 (485)
T TIGR01317 285 KVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 316 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEEec
Confidence 69999999999999888888875 69999875
No 377
>KOG1800|consensus
Probab=93.87 E-value=0.069 Score=56.24 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=32.2
Q ss_pred ccEEEECcchHHHHHHHHHhhC--CCcEEEEccCCCCCCc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM--GQKTLLLSHNIDTIGQ 44 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~--G~~V~LiE~~~~~~G~ 44 (637)
..|.|||+||||..+|..|-++ +++|.++|+-+.++|-
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL 60 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL 60 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce
Confidence 4799999999999999998874 7999999997655543
No 378
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=93.82 E-value=0.44 Score=58.18 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=27.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCc-EEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQK-TLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~ 38 (637)
-.|+|||||..|+.+|..+.+.|.+ |+++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 3799999999999999999999985 7777653
No 379
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.72 E-value=0.082 Score=51.00 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=27.0
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|.|||+|.+|..-|..+++.|++|+|+|.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 899999999999999999999999999986
No 380
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.21 E-value=0.76 Score=55.58 Aligned_cols=32 Identities=34% Similarity=0.554 Sum_probs=28.2
Q ss_pred ccEEEECcchHHHHHHHHHhhC-CC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARM-GQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~-G~-~V~LiE~~ 38 (637)
-.|+|||||..|+.+|..+.+. |. +|+++.+.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr 700 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 3699999999999999999886 85 79999875
No 381
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.16 E-value=0.31 Score=55.19 Aligned_cols=32 Identities=34% Similarity=0.602 Sum_probs=29.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|+|||+|.+|+-.|..+++...+|.+.-|.
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 47999999999999999999999999999876
No 382
>KOG1346|consensus
Probab=93.12 E-value=0.28 Score=52.20 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=36.8
Q ss_pred HHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 110 FYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 110 ~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
+.+++ .|+.+. +..|.++....+.+ .+.+.||.+++.|.||+|+|--++
T Consensus 401 ekir~-~GV~V~pna~v~sv~~~~~nl-~lkL~dG~~l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 401 EKIRK-GGVDVRPNAKVESVRKCCKNL-VLKLSDGSELRTDLVVVAVGEEPN 450 (659)
T ss_pred HHHHh-cCceeccchhhhhhhhhccce-EEEecCCCeeeeeeEEEEecCCCc
Confidence 34444 788886 78888876555443 377889999999999999998533
No 383
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.02 E-value=0.41 Score=51.69 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=31.8
Q ss_pred CCeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccCC
Q psy9395 116 LNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNG 161 (637)
Q Consensus 116 ~gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~~ 161 (637)
.++.+ ..++|.++..+... |.+.+| .+..|.+|+|||+....
T Consensus 66 ~~i~~~~~~~v~~id~~~~~---v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 66 TGIDVRTGTEVTSIDPENKV---VLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred hCCEEeeCCEEEEecCCCCE---EEECCC-cccccEEEEcCCCcccC
Confidence 46777 48889998765543 556667 88899999999997444
No 384
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.99 E-value=0.13 Score=47.73 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=28.5
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|+|+|+|..|+..|+.|++.|++|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999984
No 385
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.77 E-value=0.79 Score=53.29 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=33.2
Q ss_pred cccccCCCCEEEEEeecCCCC-HHHHHHHHHHHHHHHHHHhCCC
Q psy9395 357 SLETKQIHGLFFAGQINGTTG-YEEAASQGLLAGLNAALFSQDR 399 (637)
Q Consensus 357 tlesk~v~gLf~aGei~G~~G-y~eA~a~G~~AG~naa~~~~~~ 399 (637)
+++|. +||+|++||+.+... ..+|.++|..||.++..++.++
T Consensus 595 ~~~Ts-~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 595 PTQTH-LKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CcccC-CCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45665 899999999954332 3499999999999999887654
No 386
>KOG2495|consensus
Probab=92.35 E-value=0.62 Score=50.09 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=65.9
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEeeec
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRILN 85 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~~l~ 85 (637)
+-.|+|+|.|.+|++.+-.+-..-++|+++.... ..--. |..
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn-yFlFT---PLL---------------------------------- 96 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN-YFLFT---PLL---------------------------------- 96 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEecccc-ceEEe---ecc----------------------------------
Confidence 3579999999999999988888889999998531 10000 000
Q ss_pred cccCchhhhhhhccCHHHHHHHHHHHHHhc-CCeEEEcceeEEEEEeCCeEEE-EEEecc----eEEEeceEEEecccc
Q psy9395 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQ-LNLYLFQEEVDDLIIKTNKILG-VVTKIG----IKFFSKTVILTTGTF 158 (637)
Q Consensus 86 ~~~gp~~~~~~~~~d~~~~~~~l~~~l~~~-~gv~i~~~~V~~i~~~~~~v~g-V~~~~g----~~i~a~~VIlAtG~~ 158 (637)
|. .+...++-..+.+-+....... .++.+++++.+++..+..++.. ..+.++ ..+..|.+|+|+|+-
T Consensus 97 ----pS--~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~ 169 (491)
T KOG2495|consen 97 ----PS--TTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAE 169 (491)
T ss_pred ----CC--ccccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCC
Confidence 10 0000122222333333333332 3677789999888776665421 223334 478899999999984
No 387
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=92.30 E-value=0.13 Score=56.85 Aligned_cols=37 Identities=35% Similarity=0.348 Sum_probs=28.9
Q ss_pred cCCCCEEEEEeec-C-CC------C--HHHHHHHHHHHHHHHHHHhC
Q psy9395 361 KQIHGLFFAGQIN-G-TT------G--YEEAASQGLLAGLNAALFSQ 397 (637)
Q Consensus 361 k~v~gLf~aGei~-G-~~------G--y~eA~a~G~~AG~naa~~~~ 397 (637)
+-|||||+||+++ | .. | ..+|+..|++||++||....
T Consensus 385 ~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~~ 431 (432)
T TIGR02485 385 VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLAP 431 (432)
T ss_pred CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhhc
Confidence 4599999999984 3 32 2 34999999999999987643
No 388
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.30 E-value=0.11 Score=59.40 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=36.7
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
|..+.++||+|||+|.||++||+.|++.|++|+|+|+.....|
T Consensus 4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 4444579999999999999999999999999999999754333
No 389
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.26 Score=51.79 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=34.1
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|.-...|||+|+|-|..=|..+.+|+..|.+|+.||+|
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~N 38 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKN 38 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCC
Confidence 44335699999999999999999999999999999998
No 390
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.06 E-value=0.2 Score=52.03 Aligned_cols=38 Identities=34% Similarity=0.338 Sum_probs=32.7
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
|+++ .-.|.|||+|.+|..-|..+++.|++|+++|.++
T Consensus 1 ~~~~-~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 1 MSDA-IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred CCCC-ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 5543 2369999999999999999999999999999863
No 391
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.96 E-value=0.15 Score=49.45 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.0
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||.|..|+.+|..+|+.|++|+.+|.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 4899999999999999999999999999986
No 392
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.95 E-value=0.21 Score=52.62 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|.+.. ..|.|||+|..|...|..|++.|++|+++.++
T Consensus 1 ~~~~~-m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 1 MDSET-PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCCcC-cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 55543 47999999999999999999999999999885
No 393
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.61 E-value=0.24 Score=51.52 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=29.6
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|.+|...|..+++.|++|+++|.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 6999999999999999999999999999985
No 394
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.44 E-value=0.2 Score=56.06 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=29.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|+|||+|.+|+++|..|+++|++|+++|+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36999999999999999999999999999975
No 395
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.39 E-value=1.2 Score=53.47 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.5
Q ss_pred ccEEEECcchHHHHHHHHHhh---CCCcEEEEcc
Q psy9395 7 FDVIVVGGGHAGTEAALVSAR---MGQKTLLLSH 37 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~---~G~~V~LiE~ 37 (637)
-.|+|||||..|+.+|..+.+ .+..+.+.+.
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~ 584 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDY 584 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhh
Confidence 369999999999999987755 3666776665
No 396
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.32 E-value=0.26 Score=54.65 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=32.5
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|.|. .-.|+|||+|.+|+++|..|++.|++|+++|++
T Consensus 1 ~~~~-~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 1 MELK-GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCcC-CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5443 357999999999999999999999999999985
No 397
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.27 E-value=0.12 Score=53.04 Aligned_cols=33 Identities=39% Similarity=0.652 Sum_probs=31.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
-+|+|||||.+|..||.-+...|.+|+++|.+.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 579999999999999999999999999999874
No 398
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.24 E-value=0.28 Score=50.82 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|+|. .|.|||+|.+|...|..+++.|++|+++|.+
T Consensus 1 ~~~~---kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 1 MGIQ---KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred CCcc---EEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 5553 6999999999999999999999999999986
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.15 E-value=0.26 Score=52.49 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=29.2
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|..|...|..+++.|++|+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 4999999999999999999999999999874
No 400
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.95 E-value=0.28 Score=51.43 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=29.4
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|..|...|..|++.|.+|+++.+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5999999999999999999999999999984
No 401
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.94 E-value=0.35 Score=51.15 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=34.0
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCC-cEEEEccCC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHNI 39 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~~ 39 (637)
|.|-+...|+|||+|.+|...|+.++..|+ .++|+|.+.
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 666655689999999999999999999996 899999863
No 402
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.88 E-value=0.24 Score=55.02 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=29.3
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|+|||.|.+|++||..|+++|++|++.|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4899999999999999999999999999986
No 403
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.65 E-value=0.35 Score=50.37 Aligned_cols=32 Identities=34% Similarity=0.372 Sum_probs=30.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|.|||+|..|...|..+++.|++|+++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36999999999999999999999999999986
No 404
>KOG2495|consensus
Probab=90.65 E-value=0.94 Score=48.74 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecc--eEEEeceEEEecccc
Q psy9395 105 KQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTGTF 158 (637)
Q Consensus 105 ~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g--~~i~a~~VIlAtG~~ 158 (637)
....++...+ .++.+. ++.|.++.. .. ..+.+.+| ..+..-.+|-|||..
T Consensus 276 ~~yae~~f~~-~~I~~~~~t~Vk~V~~--~~-I~~~~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 276 VEYAENQFVR-DGIDLDTGTMVKKVTE--KT-IHAKTKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred HHHHHHHhhh-ccceeecccEEEeecC--cE-EEEEcCCCceeeecceEEEecCCCC
Confidence 3344444444 688884 778877742 12 22333444 467777889999874
No 405
>KOG1346|consensus
Probab=90.57 E-value=0.42 Score=50.92 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=73.4
Q ss_pred CcccEEEECcchHHHHHHHHHh--hCCCcEEEEccCCCCCCcccccCCCCccchhhHHHHHHHhccHHHHHHhhcCCeEe
Q psy9395 5 SKFDVIVVGGGHAGTEAALVSA--RMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFR 82 (637)
Q Consensus 5 ~~yDViVIGgG~AGl~AA~~lA--~~G~~V~LiE~~~~~~G~~~cn~s~gg~~~~~l~~el~~~gg~~~~~~~~~gi~~~ 82 (637)
++...+|||||.+..+|+.+.. ..+++|++|.-.+... -|+ | .+-+|+=..+.. . ....+.|+
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP-YmR--P--------PLSKELW~~~dp-n---~~k~lrfk 241 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP-YMR--P--------PLSKELWWYGDP-N---SAKKLRFK 241 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc-ccC--C--------CcchhceecCCC-C---hhhheeec
Confidence 4567899999988776665443 3478898886542211 111 0 111111000100 0 00122333
Q ss_pred eeccccC-chhhhhhhccCHHHHHHHHHHHHHhcCCeEEE-cceeEEEEEeCCeEEEEEEecceEEEeceEEEecccccC
Q psy9395 83 ILNSSKG-AAVRATRAQVDRILYKQAIRFYLENQLNLYLF-QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLN 160 (637)
Q Consensus 83 ~l~~~~g-p~~~~~~~~~d~~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~~~ 160 (637)
.++++.- -.+......++++.+-.+. ++|+-++ .-.|+.|..++.. |.+.||.+|..|...||||..++
T Consensus 242 qwsGkeRsiffepd~FfvspeDLp~~~------nGGvAvl~G~kvvkid~~d~~---V~LnDG~~I~YdkcLIATG~~Pk 312 (659)
T KOG1346|consen 242 QWSGKERSIFFEPDGFFVSPEDLPKAV------NGGVAVLRGRKVVKIDEEDKK---VILNDGTTIGYDKCLIATGVRPK 312 (659)
T ss_pred ccCCccceeEecCCcceeChhHCcccc------cCceEEEeccceEEeecccCe---EEecCCcEeehhheeeecCcCcc
Confidence 3332211 1111223345555544332 3788886 6689999876654 67899999999999999999644
Q ss_pred C
Q psy9395 161 G 161 (637)
Q Consensus 161 ~ 161 (637)
.
T Consensus 313 ~ 313 (659)
T KOG1346|consen 313 K 313 (659)
T ss_pred c
Confidence 3
No 406
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.37 E-value=0.31 Score=51.18 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=29.7
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
+|.|||+|..|...|..+++.|++|+++|++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 6999999999999999999999999999986
No 407
>KOG1439|consensus
Probab=90.33 E-value=0.18 Score=53.53 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=33.1
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
+..|||||+|-|..=|..+..|+..|.+|+.+|+|+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~ 37 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRND 37 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCC
Confidence 345999999999999999999999999999999984
No 408
>KOG4405|consensus
Probab=90.29 E-value=0.33 Score=51.62 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=33.0
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
+..|||||||-|..-.-.|.+.+|.|.+|+=+|++.
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~ 41 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNE 41 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCcc
Confidence 457999999999999999999999999999999984
No 409
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=90.23 E-value=0.24 Score=56.52 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=27.9
Q ss_pred cCCCCEEEEEeecC-----CCCH--------HHHHHHHHHHHHHHHH
Q psy9395 361 KQIHGLFFAGQING-----TTGY--------EEAASQGLLAGLNAAL 394 (637)
Q Consensus 361 k~v~gLf~aGei~G-----~~Gy--------~eA~a~G~~AG~naa~ 394 (637)
+-|||||+||++.| ..|| .+|+.+|++||++||.
T Consensus 502 ~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 502 TPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 45999999999974 3344 3999999999999974
No 410
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.00 E-value=0.41 Score=49.82 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=29.6
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|.+|...|..+++.|++|+++|++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 5999999999999999999999999999986
No 411
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.89 E-value=0.42 Score=45.47 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=28.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|+|+|+|.+|..||..|...|++|+++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 57999999999999999999999999999975
No 412
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.85 E-value=0.31 Score=42.29 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.9
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
...|+|||||..|..-+..|.+.|.+|+|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 357999999999999999999999999999874
No 413
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.84 E-value=2.3 Score=48.69 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=27.4
Q ss_pred ccEEEECcchHHHHHHHHHhhCC-CcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMG-QKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~ 38 (637)
-.|+|||||..|+.+|..+.+.| ..|+|+.+.
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 36999999999999999999988 568888764
No 414
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.66 E-value=0.47 Score=46.58 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=29.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|..|+..|..|++.|. +++|+|..
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999998 69999985
No 415
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.58 E-value=0.42 Score=49.67 Aligned_cols=31 Identities=35% Similarity=0.448 Sum_probs=29.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|..|...|..+++.|++|+++|++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 5899999999999999999999999999986
No 416
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.39 E-value=0.45 Score=47.63 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=29.9
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
+++|||+|-.|...|-.|++.|+.|+++|++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 5899999999999999999999999999986
No 417
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=89.35 E-value=0.89 Score=49.99 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=30.4
Q ss_pred CCeEE-EcceeEEEEEeCCeEEEEEEe-cceEEE--eceEEEeccccc
Q psy9395 116 LNLYL-FQEEVDDLIIKTNKILGVVTK-IGIKFF--SKTVILTTGTFL 159 (637)
Q Consensus 116 ~gv~i-~~~~V~~i~~~~~~v~gV~~~-~g~~i~--a~~VIlAtG~~~ 159 (637)
.++++ ++++|+.+..++..+. +... ++..+. +|.||+|||+..
T Consensus 57 ~gv~~~~~~~V~~id~~~~~v~-~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 57 RGIDVKTNHEVIEVNDERQTVV-VRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred cCCeEEecCEEEEEECCCCEEE-EEECCCCCEEecCCCEEEECCCCCC
Confidence 67888 4889999876665432 3222 245677 999999999954
No 418
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.24 E-value=0.49 Score=46.62 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|+|||||.+|...+..|.+.|++|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999864
No 419
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=89.18 E-value=0.33 Score=55.75 Aligned_cols=41 Identities=44% Similarity=0.640 Sum_probs=35.4
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
++.++||+|||+|.+|+.||+.+++.|++|+|||+.....|
T Consensus 13 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 13 WDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 44568999999999999999999999999999999743333
No 420
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.11 E-value=0.68 Score=42.29 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=30.0
Q ss_pred cccEEEECcchHHHHHHHHHhhCCCc-EEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMGQK-TLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~ 38 (637)
...|+|||+|-+|-.++.+|+..|.+ |+|+.|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35799999999999999999999987 9999885
No 421
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.92 E-value=0.35 Score=55.54 Aligned_cols=55 Identities=25% Similarity=0.471 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCeEE-EcceeEEEEEe-CCeEEEEEEec-c--eEEEec-eEEEecccccC
Q psy9395 105 KQAIRFYLENQLNLYL-FQEEVDDLIIK-TNKILGVVTKI-G--IKFFSK-TVILTTGTFLN 160 (637)
Q Consensus 105 ~~~l~~~l~~~~gv~i-~~~~V~~i~~~-~~~v~gV~~~~-g--~~i~a~-~VIlAtG~~~~ 160 (637)
...|.+.+++ .++++ +++.|++|..+ +++|+||.... | ..+.|+ .||||||+|.+
T Consensus 216 ~~~l~~~~~~-~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 216 VARLRLALKD-AGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHh-CCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 3345556655 78998 59999999886 57899987643 3 368887 59999999865
No 422
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.82 E-value=0.49 Score=49.94 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=29.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|.+|..-|..++..|++|+++|..
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5999999999999999999999999999986
No 423
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=88.80 E-value=0.41 Score=51.62 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=32.6
Q ss_pred CeEE-EcceeEEEEEeCCeEEEEEEecceEEEeceEEEecccc
Q psy9395 117 NLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTF 158 (637)
Q Consensus 117 gv~i-~~~~V~~i~~~~~~v~gV~~~~g~~i~a~~VIlAtG~~ 158 (637)
+..+ +++.|++|..+++++. |.+.+|.++.||.||+|+...
T Consensus 223 g~~i~l~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGGVT-VTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp GGGEESSEEEEEEEEESSEEE-EEETTSSEEEESEEEE-S-HH
T ss_pred CceeecCCcceeccccccccc-cccccceEEecceeeecCchh
Confidence 3466 5999999999988764 788888899999999999874
No 424
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.57 E-value=0.6 Score=47.88 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=29.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCC-CcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMG-QKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~ 38 (637)
..|+|||+|..|+++|..|++.| .+++|+|..
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 57999999999999999999999 689999975
No 425
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.53 E-value=0.51 Score=49.20 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=28.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEcc
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSH 37 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~ 37 (637)
.|.|||+|..|+..|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999987
No 426
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=88.43 E-value=0.54 Score=51.62 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|.| ..|.|||.|..|+..|..+++.|++|+++|.+
T Consensus 1 m~~---~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSF---ETISVIGLGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCc---cEEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence 664 36999999999999999999999999999986
No 427
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.30 E-value=0.54 Score=48.97 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=29.1
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|..|...|..|++.|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999999999984
No 428
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.21 E-value=0.66 Score=48.72 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=29.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|.|||+|..|...|..+++.|++|++++++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 46999999999999999999999999999975
No 429
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.08 E-value=0.68 Score=49.06 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=30.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|.|||+|..|...|..|++.|++|++++++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999999999999999999985
No 430
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=88.06 E-value=1.6 Score=49.08 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=31.6
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
|||||||++|++||..||+.|++|+|+|++...+|
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG 35 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcC
Confidence 69999999999999999999999999999854444
No 431
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.05 E-value=0.57 Score=50.55 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=30.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.+|+|||+|.+|..+|..|.+.|.+|+++++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 57999999999999999999999999999985
No 432
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.78 E-value=0.74 Score=43.32 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=28.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEcc
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSH 37 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~ 37 (637)
-.|+|||||..|..-|-.|.+.|++|+||+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 4799999999999999999999999999964
No 433
>KOG2304|consensus
Probab=87.54 E-value=0.58 Score=46.03 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=32.3
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
...-.|.|||+|.+|.--|-.+|..|+.|.|++++.
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 344689999999999999999999999999999873
No 434
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.31 E-value=0.8 Score=45.02 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=29.5
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|+|||||-.|...|..|.+.|++|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57999999999999999999999999999863
No 435
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=87.00 E-value=0.56 Score=53.62 Aligned_cols=36 Identities=31% Similarity=0.572 Sum_probs=32.8
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCC
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNID 40 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~ 40 (637)
+.+|||||||+| +|++||+.+++.|++|+|||+...
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 456999999999 899999999999999999999743
No 436
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.86 E-value=0.76 Score=48.29 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=29.1
Q ss_pred cEEEECcchHHHHHHHHHhhCC--CcEEEEccCC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG--QKTLLLSHNI 39 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~ 39 (637)
.|.|||+|..|..+|+.++..| ..|.|+|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 4999999999999999999999 5899999863
No 437
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.78 E-value=1 Score=47.48 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=32.3
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCC--cEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQ--KTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~--~V~LiE~~ 38 (637)
|+......|.|||+|..|...|+.++..|. .+.|+|.+
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 443344689999999999999999999987 79999985
No 438
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=86.78 E-value=0.48 Score=54.11 Aligned_cols=37 Identities=38% Similarity=0.583 Sum_probs=34.0
Q ss_pred CCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCCC
Q psy9395 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNID 40 (637)
Q Consensus 4 ~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~ 40 (637)
+.++||+|||+|.+|++||+.|++.|++|+|||+...
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~ 41 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 41 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3569999999999999999999999999999999743
No 439
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.75 E-value=0.73 Score=51.63 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=30.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|+|+|+|++|+.|+..|...|.+|.++|.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47999999999999999999999999999976
No 440
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.70 E-value=0.67 Score=42.21 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=28.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|..|+..|..|++.|. +++|+|..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 569999999999999999999998 69999974
No 441
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=86.56 E-value=0.57 Score=53.78 Aligned_cols=37 Identities=32% Similarity=0.499 Sum_probs=34.0
Q ss_pred CCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 3 ~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
++.++||+|||+|.+|+.||+.+++.|++|+|||++.
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~ 45 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP 45 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3456999999999999999999999999999999974
No 442
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.53 E-value=3.4 Score=44.39 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=34.9
Q ss_pred HHHHHHHHHHh-cCCeEEE-cceeEEEEEeCCeEEEEEEec---c--eEEEeceEEEeccc
Q psy9395 104 YKQAIRFYLEN-QLNLYLF-QEEVDDLIIKTNKILGVVTKI---G--IKFFSKTVILTTGT 157 (637)
Q Consensus 104 ~~~~l~~~l~~-~~gv~i~-~~~V~~i~~~~~~v~gV~~~~---g--~~i~a~~VIlAtG~ 157 (637)
|.....+.+.. .+++.++ .++|..+.-.+++-..+.+.. | .+++.|.||+|||-
T Consensus 278 y~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY 338 (436)
T COG3486 278 YDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGY 338 (436)
T ss_pred HHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEeccc
Confidence 44444444433 4667776 788999976654323344322 2 68999999999997
No 443
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.99 E-value=1.1 Score=43.02 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=28.1
Q ss_pred EEEECcchHHHHHHHHHhhCCCc-EEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQK-TLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~ 38 (637)
|+|||+|..|+..|..|++.|.. ++|+|..
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 89999999999999999999984 9999975
No 444
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.80 E-value=1.1 Score=46.68 Aligned_cols=31 Identities=35% Similarity=0.513 Sum_probs=29.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|.+|...|..+++.|++|+++|++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 5999999999999999999999999999986
No 445
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.78 E-value=1.1 Score=41.09 Aligned_cols=30 Identities=43% Similarity=0.579 Sum_probs=28.2
Q ss_pred EEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
|+|||.|..|++.|..|++.|. +++++|..
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 8999999999999999999998 69999975
No 446
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.52 E-value=1 Score=47.43 Aligned_cols=31 Identities=35% Similarity=0.553 Sum_probs=29.4
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|..|...|..+++.|+.|.+++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 5999999999999999999999999999985
No 447
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.51 E-value=0.94 Score=47.91 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=29.1
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|..|...|..|++.|++|.++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4899999999999999999999999999885
No 448
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=85.48 E-value=0.99 Score=47.37 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=28.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
.|.|||+|..|...|+.++..|+ +|+++|..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999886 89999974
No 449
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.36 E-value=1.1 Score=47.74 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=29.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|..|+.+|..|++.|. +++|+|..
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 579999999999999999999998 89999985
No 450
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=85.29 E-value=1.2 Score=50.32 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=30.4
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
-.|.|||+|.+|..-|..+++.|+.|+++|++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999999999999863
No 451
>PRK12839 hypothetical protein; Provisional
Probab=84.91 E-value=0.67 Score=53.07 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCeEEE-cceeEEEEEe-CCeEEEEEEec--ce-EEEe-ceEEEecccccC
Q psy9395 102 ILYKQAIRFYLENQLNLYLF-QEEVDDLIIK-TNKILGVVTKI--GI-KFFS-KTVILTTGTFLN 160 (637)
Q Consensus 102 ~~~~~~l~~~l~~~~gv~i~-~~~V~~i~~~-~~~v~gV~~~~--g~-~i~a-~~VIlAtG~~~~ 160 (637)
..+...|.+.+.+ .+++++ ++.|++|..+ +++|.||...+ +. .+.+ +.||+|||+|..
T Consensus 214 ~~l~~~L~~~a~~-~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADD-LGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHH-CCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 3455667777766 688885 8999999765 67899987643 32 3444 899999999865
No 452
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=84.82 E-value=1.1 Score=46.41 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=29.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|-+|.++|+.|+..|. +|+|++++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 369999999999999999999997 79999885
No 453
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.81 E-value=1.4 Score=43.34 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=29.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||.|..|+++|..|++.|. +++|+|..
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 579999999999999999999997 89999974
No 454
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=84.34 E-value=0.99 Score=41.40 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=27.6
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccCCC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNID 40 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~ 40 (637)
++|+|+|+.+...|-.++..|++|+++|...+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999997643
No 455
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.29 E-value=1.3 Score=47.16 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=30.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|..|+.+|..|++.|. +++|+|..
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999998 89999985
No 456
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=84.24 E-value=0.62 Score=52.64 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=26.9
Q ss_pred cCCCCEEEEEeecC-CC-------CH--HHHHHHHHHHHHHHHH
Q psy9395 361 KQIHGLFFAGQING-TT-------GY--EEAASQGLLAGLNAAL 394 (637)
Q Consensus 361 k~v~gLf~aGei~G-~~-------Gy--~eA~a~G~~AG~naa~ 394 (637)
+-|||||+||++.| .. |. .+|+..|++||.+|+.
T Consensus 467 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 467 RPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 45999999999843 22 33 3999999999999964
No 457
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.70 E-value=1.2 Score=50.00 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=30.0
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
.|.|||+|.+|..-|..+++.|++|+++|++.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999863
No 458
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=83.65 E-value=1.5 Score=44.29 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=28.9
Q ss_pred cccEEEECcchHHHHHHHHHhhCC-----------CcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMG-----------QKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G-----------~~V~LiE~~ 38 (637)
...|+|||+|..|+..+-.||+.| .+++|+|..
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 468999999999999999999974 288999874
No 459
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.45 E-value=1.5 Score=48.58 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|++.. -.|+|+|+|.+|+++|..|++.|++|++.|++
T Consensus 1 ~~~~~-k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 1 TEYQN-KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred CCcCC-CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 55532 35899999999999999999999999999975
No 460
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.43 E-value=1.4 Score=47.51 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=30.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCC-CcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMG-QKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~ 38 (637)
-+|+|||+|..|..+|.-||+.| .+|++.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 36999999999999999999999 899999986
No 461
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.10 E-value=1.6 Score=45.80 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=29.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|.|||+|..|...|..++..|. .|.|+|.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 369999999999999999999876 99999985
No 462
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.03 E-value=1.8 Score=37.89 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=27.2
Q ss_pred EEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|+|+|.|..|...|-.|.+.+.+|+++|.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 689999999999999999977799999986
No 463
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=82.97 E-value=1.3 Score=48.67 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=29.4
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||.|.+|+..|..+++.|++|++++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence 4899999999999999999999999999986
No 464
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.91 E-value=1.8 Score=42.80 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=29.5
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCc-EEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQK-TLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~ 38 (637)
..|+|||+|..|+..|..|++.|.. ++|+|..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5799999999999999999999985 9999975
No 465
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.89 E-value=1.3 Score=52.18 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=29.6
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|.+|..-|..+|..|++|+|+|.+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDIN 345 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCC
Confidence 5899999999999999999999999999986
No 466
>PRK04148 hypothetical protein; Provisional
Probab=82.83 E-value=1.1 Score=40.91 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=28.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
..+++||.| .|...|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 359999999 99988999999999999999863
No 467
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.73 E-value=1.8 Score=43.38 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=29.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCc---EEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQK---TLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~---V~LiE~~ 38 (637)
..|+|+|+|.+|..+|..+++.|.+ +.+++++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4699999999999999999999975 9999985
No 468
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.65 E-value=1.5 Score=45.91 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=28.8
Q ss_pred cEEEECcchHHHHHHHHHhhCC--CcEEEEccCC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG--QKTLLLSHNI 39 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~~ 39 (637)
.|+|||+|.+|.+.|+.|+..| ..+.|+|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4899999999999999999999 4799999863
No 469
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=82.58 E-value=1.3 Score=46.32 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=27.6
Q ss_pred EEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
|.|||+|.+|...|..++..|. .|+|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999998876 99999986
No 470
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.53 E-value=1.8 Score=43.82 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=29.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|..|+.+|..|++.|. +++++|..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 579999999999999999999996 78888874
No 471
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.28 E-value=1.4 Score=51.77 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=29.6
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|.+|..-|..+|..|++|+|+|.+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDIN 345 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 5899999999999999999999999999986
No 472
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=82.10 E-value=1.8 Score=48.74 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=29.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|.+|..-|..+++.|++|+++|++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5999999999999999999999999999986
No 473
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.81 E-value=1.7 Score=47.52 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=29.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|+|+|+|+.|+.+|..|...|.+|+++|.+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 36999999999999999999999999999875
No 474
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=81.76 E-value=1.7 Score=48.74 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=29.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|+|+|+|.+|+.|+..|...|.+|.++|.+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999999999999976
No 475
>PRK08328 hypothetical protein; Provisional
Probab=81.75 E-value=2 Score=43.17 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=29.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|..|+.+|..|++.|. +++|+|..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 579999999999999999999997 68899874
No 476
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.07 E-value=2.1 Score=47.33 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=32.0
Q ss_pred CCCCCcccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|.+.. -.++|+|.|.+|+++|..|+++|++|++.|..
T Consensus 1 ~~~~~-~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~ 37 (445)
T PRK04308 1 MTFQN-KKILVAGLGGTGISMIAYLRKNGAEVAAYDAE 37 (445)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55432 36999999999999999999999999999975
No 477
>PRK07454 short chain dehydrogenase; Provisional
Probab=81.01 E-value=2.4 Score=42.15 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCCCCcccEEEECc-chHHHHHHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGG-GHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGg-G~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
|.+.++.-++|.|| |..|...|..++++|.+|+++.++
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 66666667899986 889999999999999999999985
No 478
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=80.97 E-value=1.7 Score=45.41 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=29.1
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||||.+|..-|..+|..|+.|+++|.+
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 6999999999999999999988999999986
No 479
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=80.96 E-value=2.1 Score=41.89 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=29.7
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|+|+|.|-.|..+|..|.+.|++|++.|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999999875
No 480
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=80.95 E-value=0.66 Score=51.18 Aligned_cols=30 Identities=40% Similarity=0.646 Sum_probs=22.7
Q ss_pred cCCCCEEEEEeecCC-C------CHH--HHHHHHHHHHH
Q psy9395 361 KQIHGLFFAGQINGT-T------GYE--EAASQGLLAGL 390 (637)
Q Consensus 361 k~v~gLf~aGei~G~-~------Gy~--eA~a~G~~AG~ 390 (637)
+.|||||+||++.|. . |.. +|+.+|++||+
T Consensus 401 ~~IpGLyAaG~~~gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 401 KPIPGLFAAGEVTGGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred CEecccEEeeecccccCCCCCCchhhhhhhhhhhHhhcC
Confidence 459999999998543 2 333 88999999984
No 481
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=80.80 E-value=1.9 Score=48.09 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=28.3
Q ss_pred cEEEECcchHHHHHHHHHhhCC--CcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMG--QKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G--~~V~LiE~~ 38 (637)
.|.|||.|..|+..|..+|+.| ++|+.+|.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 5999999999999999999984 789999976
No 482
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=80.68 E-value=2.2 Score=40.16 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=28.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|-+||-|.+|...|..|++.|++|.+++++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 36999999999999999999999999999986
No 483
>KOG2404|consensus
Probab=80.67 E-value=0.53 Score=48.68 Aligned_cols=53 Identities=30% Similarity=0.375 Sum_probs=33.9
Q ss_pred eEEeccccccccceeCccccCccccccCCCCEEEEEeecCC-CCHH--------HHHHHHHHHHHHH
Q psy9395 335 ANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGT-TGYE--------EAASQGLLAGLNA 392 (637)
Q Consensus 335 a~v~~~G~~~e~~~v~~~~l~~tlesk~v~gLf~aGei~G~-~Gy~--------eA~a~G~~AG~na 392 (637)
+.+|-||+-|.- -.+.++..= +.+.|||+|||+.|. .|-| ||...|.+||..|
T Consensus 406 vHyTMGGvkid~---ksrVi~~ng--~vi~GlfAAGEvsGGvHGaNRLgGsSLLeCVVFGr~Ag~~A 467 (477)
T KOG2404|consen 406 VHYTMGGVKIDE---KSRVIDKNG--KVIVGLFAAGEVSGGVHGANRLGGSSLLECVVFGRTAGKAA 467 (477)
T ss_pred EEEeccceEech---hhhhhccCC--cEeeeeeEcceeccccccccccCcccceeeeeecccchhhH
Confidence 455566632221 133444332 668899999999655 3544 9999999998743
No 484
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=80.46 E-value=1.8 Score=51.01 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=29.5
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||+|.+|..-|..++..|++|+|+|.+
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~ 367 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDAT 367 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCC
Confidence 5999999999999999999999999999986
No 485
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.36 E-value=2.4 Score=43.04 Aligned_cols=32 Identities=31% Similarity=0.350 Sum_probs=29.4
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|..|+.+|..|++.|. +++|+|..
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 579999999999999999999996 79999874
No 486
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=80.24 E-value=5.4 Score=44.68 Aligned_cols=37 Identities=35% Similarity=0.508 Sum_probs=33.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccCCCCCC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~~~~G 43 (637)
.||||||||++|++||..|++.|++|+|+|++...+|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 5899999999999999999999999999999844444
No 487
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=80.22 E-value=2 Score=47.84 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=32.5
Q ss_pred CCCCCcccEEEECcchHHHH-HHHHHhhCCCcEEEEccC
Q psy9395 1 MLFKSKFDVIVVGGGHAGTE-AALVSARMGQKTLLLSHN 38 (637)
Q Consensus 1 M~~~~~yDViVIGgG~AGl~-AA~~lA~~G~~V~LiE~~ 38 (637)
|++...-.|.|||.|-+|++ +|..|.++|++|++.|..
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~ 40 (461)
T PRK00421 2 PELRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLK 40 (461)
T ss_pred CCcCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCC
Confidence 55554456999999999999 599999999999999975
No 488
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.02 E-value=2.3 Score=44.24 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=28.9
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCc-EEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQK-TLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~-V~LiE~~ 38 (637)
..++|+|+|-+|.++|+.+++.|.+ |+++.++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3689999999999999999999987 9999885
No 489
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=79.94 E-value=2.5 Score=42.28 Aligned_cols=32 Identities=38% Similarity=0.423 Sum_probs=29.3
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||+|..|++.|..|++.|. +++|+|..
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 579999999999999999999997 78899874
No 490
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.74 E-value=2.4 Score=44.51 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=30.0
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|.|||+|..|...|..+++.|++|.+++++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36999999999999999999999999999985
No 491
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.67 E-value=1.3 Score=47.38 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=29.8
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccCC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHNI 39 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~~ 39 (637)
.+.|||.|-.|+..|..+|+.|+.|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 48899999999999999999999999999863
No 492
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=79.11 E-value=1.6 Score=48.58 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=29.8
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
-.|+|||+|.+|+..|..+++.+.+|+++.+.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 36999999999999999999999999999874
No 493
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.09 E-value=2.8 Score=42.11 Aligned_cols=32 Identities=41% Similarity=0.414 Sum_probs=29.5
Q ss_pred ccEEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
..|+|||.|..|+++|..|++.|. +++|+|..
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999997 89999974
No 494
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.72 E-value=2.6 Score=41.98 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=29.1
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|+|||||..+..=+..|.+.|++|+|+...
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999753
No 495
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.67 E-value=2.7 Score=43.71 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=29.1
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||.|..|...|..+++.|++|++++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~ 34 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRN 34 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5999999999999999999999999999875
No 496
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.63 E-value=2.7 Score=42.29 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=27.6
Q ss_pred EEEECcchHHHHHHHHHhhCCC-cEEEEccC
Q psy9395 9 VIVVGGGHAGTEAALVSARMGQ-KTLLLSHN 38 (637)
Q Consensus 9 ViVIGgG~AGl~AA~~lA~~G~-~V~LiE~~ 38 (637)
|+|||+|..|++.+..|++.|. +++|+|..
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 8999999999999999999996 78899874
No 497
>PTZ00117 malate dehydrogenase; Provisional
Probab=78.57 E-value=2.9 Score=44.13 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=29.7
Q ss_pred cccEEEECcchHHHHHHHHHhhCC-CcEEEEccC
Q psy9395 6 KFDVIVVGGGHAGTEAALVSARMG-QKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~AGl~AA~~lA~~G-~~V~LiE~~ 38 (637)
...|.|||+|..|...|+.++..| ..+.|+|.+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 357999999999999999999988 689999986
No 498
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.19 E-value=2.7 Score=43.96 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=30.2
Q ss_pred ccEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 7 yDViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
..|+|||.|.+|..+|..|.+.|.+|+++++.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 57999999999999999999999999999986
No 499
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=78.17 E-value=3.2 Score=39.50 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=29.2
Q ss_pred cccEEEECcch-HHHHHHHHHhhCCCcEEEEccC
Q psy9395 6 KFDVIVVGGGH-AGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 6 ~yDViVIGgG~-AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
...|+|||+|- +|..+|..|.+.|.+|+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 36899999996 6999999999999999999874
No 500
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=77.98 E-value=2.5 Score=45.90 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=27.2
Q ss_pred cEEEECcchHHHHHHHHHhhCCCcEEEEccC
Q psy9395 8 DVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38 (637)
Q Consensus 8 DViVIGgG~AGl~AA~~lA~~G~~V~LiE~~ 38 (637)
.|.|||.|.+|+..|..+|. |++|+++|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECC
Confidence 48999999999999988885 9999999986
Done!