RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9395
(637 letters)
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 1132 bits (2932), Expect = 0.0
Identities = 385/627 (61%), Positives = 484/627 (77%), Gaps = 7/627 (1%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLV 60
M + FDVI++GGGHAGTEAA+ +ARMGQ+TLLL+HNIDT+GQMSCNP+IGGIGK HLV
Sbjct: 23 MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 82
Query: 61 KEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYL 120
KE+DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R LENQ NL +
Sbjct: 83 KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 142
Query: 121 FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFST 180
FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS GR GD +
Sbjct: 143 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 202
Query: 181 TSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQ 240
L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +GN + HP+Q
Sbjct: 203 IPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFMGNASQHPQQ 261
Query: 241 LSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEP 300
+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF + H IFLEP
Sbjct: 262 VPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEP 321
Query: 301 EGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLET 360
EG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P +LK +LE+
Sbjct: 322 EGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLES 381
Query: 361 KQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT 420
K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYLGVLVDDL T
Sbjct: 382 KFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCT 441
Query: 421 KGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQR 480
G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K E I +E QR
Sbjct: 442 LGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQR 501
Query: 481 LKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEI 540
LK TW+ PS E L + E S +LL P + Y LT+L +
Sbjct: 502 LKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAP------AL 555
Query: 541 YQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKY 600
E +Q++IQ++YEGYI RQ +E+EK NEN LP LDY ++ LS E KLN +
Sbjct: 556 TDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDH 615
Query: 601 KPETIGQASRISGVTPAALTLLLIYLK 627
KP +IGQASRISGVTPAA+++LL++LK
Sbjct: 616 KPASIGQASRISGVTPAAISILLVWLK 642
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 1114 bits (2883), Expect = 0.0
Identities = 279/626 (44%), Positives = 396/626 (63%), Gaps = 4/626 (0%)
Query: 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKE 62
+DVIVVG GHAG EAAL AR G LL++ ++ + +MSCNP+IGG+ K + +E
Sbjct: 18 GSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITRE 77
Query: 63 IDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 122
IDA+GG M A D +GIQFR+LN SKG A+ + RAQ D+ Y +R +E++ N+ L Q
Sbjct: 78 IDALGGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ 137
Query: 123 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR-FGDFSTT 181
+ V + + K V + G +K IL GTFLNG IHIG+ + GR +
Sbjct: 138 DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVE 197
Query: 182 SLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQL 241
L + L L S GRLKTGTPPRID R++D++ + EQ GD FS + +
Sbjct: 198 GLTESLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGD-VDPVPFSFSSTSVANRNLV 256
Query: 242 SCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPE 301
SC++T T EKTH+I+R+ F SP+F+GK++ +GPRYCPSIEDK+ RFP K SHHIFLEPE
Sbjct: 257 SCYLTKTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPE 316
Query: 302 GIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETK 361
G E Y NG STSLP + QI ++SI G++ A +IRPGYAIEYD+F+P ++S++ET+
Sbjct: 317 GTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETR 376
Query: 362 QIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITK 421
+ LFFAGQINGT+GYEEAA+QGL+AG+NA ++ + GRDQAY+GVL+DDLITK
Sbjct: 377 PVENLFFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITK 436
Query: 422 GIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRL 481
+EPYRMFTS AE+RL LR DNADLRL +IG+ VS E + + L+ +
Sbjct: 437 ETKEPYRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVM 496
Query: 482 KDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIY 541
K + P+ +NT + +K +L+ P ++ + + ++
Sbjct: 497 KTAKVTPAEINT-LLMNKGLQELKTPARALSLIKRPGISLQDILEHSL-SVRSAAEELCN 554
Query: 542 QEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYK 601
+ +Q++I+++YEGYI R+ ++ ++L +P N +Y + SLS E R+KL K++
Sbjct: 555 DPRVAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHR 614
Query: 602 PETIGQASRISGVTPAALTLLLIYLK 627
P TIGQASRI GV+P+ +++L+I L
Sbjct: 615 PATIGQASRILGVSPSDVSILMIRLG 640
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 1094 bits (2833), Expect = 0.0
Identities = 300/634 (47%), Positives = 416/634 (65%), Gaps = 27/634 (4%)
Query: 1 MLFKS-KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHL 59
M + +FDV+V+GGGHAG EAAL +ARMG KT + N DTIGQMSCNP+IGGI K +
Sbjct: 21 MAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIV 80
Query: 60 VKEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLY 119
V+EIDA+GG M A D++GIQF++LN+ KG AV++ RAQ D+ Y++ ++ ENQ NLY
Sbjct: 81 VREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLY 140
Query: 120 LFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS 179
+ QEEV D+I+K N+++GV T +G+++ +K V++TTGTFLNG I+IG K GR G+
Sbjct: 141 IKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPR 200
Query: 180 TTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGN------ 233
+ L+ + R KTGTP R+DKRTIDFS +E GD DP P FS
Sbjct: 201 SEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGD-DPPPKFSFWTEPVGSYW 259
Query: 234 INLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKS 293
+Q++C+IT+T KTH IIR + ++ G I+ IGPRYCPSIEDK+ +FP K+
Sbjct: 260 FPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKER 319
Query: 294 HHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCN 353
H IFLEPEG+ E YPNG+STSLP E Q E+ +SI G++N +IRP YAIEYD P
Sbjct: 320 HQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTE 379
Query: 354 LKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGV 413
L +LETK+I GLF AG NGTTGYEEAA QG++AG+NAAL + ++P RD++Y+GV
Sbjct: 380 LYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGV 439
Query: 414 LVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREI 473
++DDL TKG+ EPYR+FTSR+EYRL +R+DNA LRL ++G +LG +S +Q+K+ ++
Sbjct: 440 MIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELERE 499
Query: 474 ITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGK 533
I K + K ++ ++ + + Y+L ++
Sbjct: 500 IEKWKEFYKSERVSVAVGGDTR-SYSVATLMTMNYTLDDVKEKFGYEVPQH--------- 549
Query: 534 NLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEA 593
+K++++IQL+YE YI R+ EK K E+ K+P ++DY KI L+ EA
Sbjct: 550 ---------PYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEA 600
Query: 594 RQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 627
R+KL K+KP T+GQASRI G+TPAA+T LL+YL
Sbjct: 601 REKLKKFKPITVGQASRIDGITPAAITALLVYLG 634
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 399 bits (1027), Expect = e-134
Identities = 98/461 (21%), Positives = 159/461 (34%), Gaps = 68/461 (14%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL---------SHNIDTIGQMSCNPSIGGI---- 54
V VVG G AG+EAA R+G L +H D ++ C+ S+GG
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGETN 62
Query: 55 GKSHLVKEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLEN 114
K L E+ G ++ A D + + A A VDR + I L
Sbjct: 63 AKGLLQAEMRRAGSLVMEAADLA----------RVPAGGALA--VDREEFSGYITERLTG 110
Query: 115 QLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 174
L + +EEV ++ +L TG + + LK G
Sbjct: 111 HPLLEVVREEVREIP------------------PGITVLATGPLTSEALAEALKRRF-GD 151
Query: 175 FGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNI 234
+ + + + + ++ EE+ F +
Sbjct: 152 HFLAYYDAASPIVLYESIDLTKCFRAGRYGQSADYLNCPMTEEEYRRFHQAL-------L 204
Query: 235 NLHPKQLSCFITHTNEKTHNIIRSEFKN--SPIFSGKIESIGPRYCPSIEDKVYRFPKKK 292
+ + + + + G ++ +G R K+
Sbjct: 205 EAQRHTPHDWEKLEFFEACVPVEELARRGYQTLLFGPMKPVGLVDP--------RTGKEP 256
Query: 293 SHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPC 352
+ L E + G T L + Q L+Q I G++NA I+R G Y N
Sbjct: 257 FAVVQLRQEDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAP 316
Query: 353 N-LKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 411
L +LE ++ GL+ AG + G GY E+A+ G LAGLNAA + P P +++ L
Sbjct: 317 RLLGETLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLPPVAP-PEESML 375
Query: 412 GVLVDDLITKGIQEPYRMF-----TSRAEYRLNLREDNADL 447
G LV L T + M+ E R+ +E +
Sbjct: 376 GGLVRYLATANPEGFQPMYANWGLVPPVEGRMGKKEKRQAM 416
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 345 bits (887), Expect = e-116
Identities = 49/256 (19%), Positives = 87/256 (33%), Gaps = 35/256 (13%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDA 65
+ V++VG G +G E A A+ G + LL+ ++D + P S L + D
Sbjct: 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDP 62
Query: 66 MGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEV 125
K V A A+ +L E L+LFQ
Sbjct: 63 ----------------------KDERVWAFHARAKYLL---------EGLRPLHLFQATA 91
Query: 126 DDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAK 185
L+++ N+++GV T G + V+L G+FL ++ +G AGR + S L +
Sbjct: 92 TGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLE 151
Query: 186 RLKELQLSHGRLKTGTP--PRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNI-NLHPKQLS 242
L L + P P + + + + L + +
Sbjct: 152 DLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFR-LKRLEGLYAVGLCVRE 210
Query: 243 CFITHTNEKTHNIIRS 258
+E+ +
Sbjct: 211 GDYARMSEEGKRLAEH 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.0 bits (191), Expect = 5e-15
Identities = 103/605 (17%), Positives = 178/605 (29%), Gaps = 183/605 (30%)
Query: 111 YLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGI---------KFFSKTVILTTGTFLNG 161
+++ L +EE+D +I+ + + G + + F + V+ FL
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 162 KIH-------IGLKSYSAGR---FGD---FS---------TTSLAKRLKELQLS-----H 194
I + + Y R + D F+ L + L EL+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 195 GRLKTGTPPRIDKR--TIDFSKMEEQIGDFDPVPVFSV-LGNIN---LHPKQLSCFITHT 248
G L +G K +D + +F + L N N + L
Sbjct: 157 GVLGSG------KTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEML------- 202
Query: 249 NEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEY 308
+K I + + S I SI+ ++ R K K
Sbjct: 203 -QKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRLLKSKP--------------- 242
Query: 309 YPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP-CNLKSSLETKQIHGLF 367
Y N L LV + ++NA + FN C K L T+
Sbjct: 243 YEN----CL-------LV--LLNVQNAKAW--------NAFNLSC--KILLTTRFKQVTD 279
Query: 368 FAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDL---ITKG-- 422
F T + S L +L + YL DL +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLK------------YLDCRPQDLPREVLTTNP 327
Query: 423 -----IQEPYRMFTSRAEYRLNLREDNADLRLTE-IGWKLGCVS-------YKQWKIFEK 469
I E R + + + N D +LT I L + + + +F
Sbjct: 328 RRLSIIAESIRDGLATWDN---WKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 470 KREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSL-- 527
I T L + W + + V+ K H+YSL + P + ++ S+
Sbjct: 384 SAHIPTILLSLI---WFDVI---KSDVMVVVNKL--HKYSL--VEKQPKESTISIPSIYL 433
Query: 528 ----KGINGKNLYNTEI--YQE----DIKKQLKIQL-----QYEGYILRQINEVEKNKIN 572
K N L+ + + Y D + L + G+ L+ I E+ +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 573 ENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLK 632
+ L + +++ QK+ A SG L L Y K
Sbjct: 494 RMVFL--DFRFLE---------QKIRH-----DSTAWNASGSILNTLQQLKFY------K 531
Query: 633 NFIKK 637
+I
Sbjct: 532 PYICD 536
Score = 59.1 bits (142), Expect = 4e-09
Identities = 65/551 (11%), Positives = 153/551 (27%), Gaps = 171/551 (31%)
Query: 210 IDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRS-EFK---NSP- 264
+DF E Q D + VF C + +I+ E S
Sbjct: 7 MDFETGEHQYQYKDILSVF--EDAFV---DNFDC--KDVQDMPKSILSKEEIDHIIMSKD 59
Query: 265 ----------IFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVI--NEYYPNG 312
K E + ++ + Y+F +P + E
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 313 ISTSLPF--------EAQIELVQS-----------IDGMKNANIIRPGYAIEYDYFNPCN 353
+ + F + ++L Q+ IDG+ + G
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----G------------ 162
Query: 354 LKSSL--ETKQIHGL--FFAGQIN-GTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQ 408
K+ + + + + +I + +L L L Q W D
Sbjct: 163 -KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQ-KLLYQIDPNWTSRSDH 219
Query: 409 AY-------------------------LGVLVDDLITKGIQEPY----RM-FTSR----- 433
+ L VL ++ + ++ T+R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 434 ----AEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPS 489
A ++ D+ + LT + + K + ++L R T NP
Sbjct: 279 DFLSAATTTHISLDHHSMTLTP---------DEVKSLLLKYLDCRPQDLPREVLT-TNPR 328
Query: 490 ILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTS--------LKGINGKNLYNT-EI 540
L+ ++ + I+ + + W +VN + LT+ L+ + +++ +
Sbjct: 329 RLS------IIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 541 YQEDIK---KQLKI---QLQYE--GYILRQINE---VEKNKINENLKLPHNLDYMKIQSL 589
+ L + + ++ ++++ VEK + + ++ Y++++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSI-YLELKVK 438
Query: 590 S----------IEARQKLNKYKPETIGQASR-----------ISGVTPAALTLLL--IYL 626
++ + + + + + L ++L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 627 KSGFLKNFIKK 637
FL+ I+
Sbjct: 499 DFRFLEQKIRH 509
Score = 51.4 bits (122), Expect = 8e-07
Identities = 83/582 (14%), Positives = 158/582 (27%), Gaps = 177/582 (30%)
Query: 22 ALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEI-------DAM-GGI--MA 71
AL+ R + L+ G + G GK+ + ++ M I +
Sbjct: 143 ALLELRPAKNVLI--D-----G-V------LGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 72 IATDKS-GIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLE---NQLNLYLFQEE-VD 126
+ S +L + R + I+ + +L L + +
Sbjct: 189 LKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 127 DLIIKTNKILGVVTKIGIKFF---SKTVILTTGT----FLNGKI--HIGLKSYSAGRFGD 177
L++ N V F K ++ T FL+ HI L +S
Sbjct: 246 CLLVLLN----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTP 300
Query: 178 FSTTSL-AKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLG-NIN 235
SL K L + ++ +P S++ +I
Sbjct: 301 DEVKSLLLKYLD---------------------CRPQDLPREVLTTNPR-RLSIIAESIR 338
Query: 236 LHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHH 295
+ +K II S P+ K++
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLE--------------PAEYRKMF-----DRLS 379
Query: 296 IFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLK 355
+F P I P + + + F+ V + N +
Sbjct: 380 VF--PPSAHI----PTILLSLIWFDVIKSDVMVVV-------------------NKLHKY 414
Query: 356 SSLE------TKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQ- 408
S +E T I ++ ++ E A + ++ N D P DQ
Sbjct: 415 SLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 409 --AYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKI 466
+++G L E +F R + L+ R +R W +
Sbjct: 473 FYSHIG---HHLKNIEHPERMTLF--RMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 467 FEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTS 526
+ + I N + ER++ ++ + L P +
Sbjct: 527 LKFYKPYICD---------------NDPKYERLV-------NAILDFL--PKI------- 555
Query: 527 LKGINGKNLYNTEIYQEDIKKQLKIQLQYE-GYIL----RQI 563
+NL ++ D+ L+I L E I +Q+
Sbjct: 556 -----EENLICSK--YTDL---LRIALMAEDEAIFEEAHKQV 587
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 61.0 bits (148), Expect = 5e-10
Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL-SHNIDTIGQMSCNPSIGGIGKSHLVKEID 64
K+DV+++GGG AG+ AA +R G K LL+ S + IG C + K+H ++
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCG---DAVSKAH-FDKLG 61
Query: 65 AMGGIMA-IATDKSGIQFRILN-------SSKGAAVRATRAQVDRILYKQAIRFYLENQL 116
+ +GI+ + + +G + ++ + K+A +E
Sbjct: 62 MPYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELN--APLYNQRVLKEAQDRGVE--- 116
Query: 117 NLYLFQEEVDDLIIKTNKILGVVTKI-----GIKFFSKTVILTTG 156
I + + G V + +SK V+ TG
Sbjct: 117 --IWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATG 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 2e-09
Identities = 83/513 (16%), Positives = 145/513 (28%), Gaps = 190/513 (37%)
Query: 184 AKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHP--KQL 241
A + L LSHG L+ + VP QL
Sbjct: 3 AYSTRPLTLSHGSLEH---------VL-------------LVPT-------ASFFIASQL 33
Query: 242 -SCFITHTNEKTHNIIRSEFKNSPI-----FSGKIESI-----GPRYCPSIEDKVYRFPK 290
F E T + +P F G + S+ ++ + + F
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-- 91
Query: 291 KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN 350
+ +LE I + ++ L E LV K +I+ +Y
Sbjct: 92 ---ENCYLEGNDI-------HALAAKLLQENDTTLV------KTKELIK-------NYIT 128
Query: 351 PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFS-QDRDPWIPGRDQA 409
+ K+ + F A +G A L A+F Q G
Sbjct: 129 ARIMAKRPFDKKSNSALF-----------RAVGEG-NAQL-VAIFGGQ-------GNTDD 168
Query: 410 YLGVLVDDLITKGIQEPYRMFTSRAEYRLNLRE--DNADLRLTEIGWKLGCVSYKQWKIF 467
Y ++L ++ Y+ Y + + + + L+E L + K+F
Sbjct: 169 YF----EEL-----RDLYQT------YHVLVGDLIKFSAETLSE----LIRTTLDAEKVF 209
Query: 468 EKKREIITKELQRLKDTWI-NPSILNTGESERVLGKRIKHEYSLSNLLTWPN------VN 520
+ I+ W+ NPS +Y LS ++ P +
Sbjct: 210 TQGLNIL---------EWLENPS------------NTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 521 YNTLTSLKGINGKNLYNT-----------------------EIYQEDIKKQLKI------ 551
Y L G L + E + ++K + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 552 --QLQYEGYILRQINEVEKNKINENLKLPHNLDYM-KIQSLSIEARQK----LNKYKPET 604
Y L + ++ + N +P M I +L+ E Q N + P
Sbjct: 309 RCYEAYPNTSLPP--SILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPA- 362
Query: 605 IGQASRIS---G-----VT--PAALTLLLIYLK 627
G+ IS G V+ P +L L + L+
Sbjct: 363 -GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Score = 54.7 bits (131), Expect = 9e-08
Identities = 63/303 (20%), Positives = 101/303 (33%), Gaps = 88/303 (29%)
Query: 35 LSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAMGGI---MAIATDKSGIQFRILNSSK--- 88
L+H + T + P G +S+L G+ +AIA S F ++ K
Sbjct: 246 LAHYVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAIT 301
Query: 89 -----GAAVRATRAQVDRILYKQAIRFYLEN-------QLNLY-LFQEEVDDLIIKTNKI 135
G VR A + L + LEN L++ L QE+V D + KTN
Sbjct: 302 VLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 136 LGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHG 195
L ++ I L + + + + + L L L+
Sbjct: 360 LPA---------------------GKQVEISL--VNGAK--NLVVSGPPQSLYGLNLTLR 394
Query: 196 RLKTGTPPRIDKRTIDFSKMEEQIGD-FDPV--PVFSVL--------------GNINLHP 238
+ K P +D+ I FS+ + + + F PV P S L N++ +
Sbjct: 395 KAK--APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 239 KQLSC--FITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSI-EDKVY--RFPKKKS 293
K + + T +R SG SI R I V + K+
Sbjct: 453 KDIQIPVYDTFDGSD----LRV-------LSG---SISERIVDCIIRLPVKWETTTQFKA 498
Query: 294 HHI 296
HI
Sbjct: 499 THI 501
Score = 43.1 bits (101), Expect = 3e-04
Identities = 39/239 (16%), Positives = 69/239 (28%), Gaps = 72/239 (30%)
Query: 204 RIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEK--THNIIRSEFK 261
R D ++ G FS+L + +P L+ K N F+
Sbjct: 1648 RADN------HFKDTYG-------FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 262 NSPIFSGKIESIGPRYCPSIEDKVYRFPKKK--------------SHHIF--LEPEGIVI 305
K E I +R K F L+ +G++
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 306 NEYYPNG-----------ISTSLPFEAQIELV------------QSIDGMKNANIIRPGY 342
+ G ++ + E+ +E+V + G N +I
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI---- 1810
Query: 343 AIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYE-EAA------SQGLLAGLNAAL 394
AI NP + +S + + + ++ TG+ E Q + AG AL
Sbjct: 1811 AI-----NPGRVAASFSQEALQ--YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Score = 40.0 bits (93), Expect = 0.003
Identities = 61/346 (17%), Positives = 105/346 (30%), Gaps = 136/346 (39%)
Query: 257 RSEFKNSPIFSGKI-----ESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPN 311
+K S + Y SI D V P + H F +G I E Y
Sbjct: 1633 MDLYKTSKAAQ-DVWNRADNHFKDTYGFSILDIVINNPVNLTIH-FGGEKGKRIRENY-- 1688
Query: 312 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQ 371
+++ FE +DG L+T++I F
Sbjct: 1689 ---SAMIFE------TIVDG-------------------------KLKTEKI----FKEI 1710
Query: 372 INGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGV---LVDDLITKGIQEPYR 428
+T Y + +GLL +A F+Q P A + +DL +KG+
Sbjct: 1711 NEHSTSYTFRSEKGLL---SATQFTQ------P----ALTLMEKAAFEDLKSKGLIPADA 1757
Query: 429 MFTSRA-----EY--------RLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR-EII 474
F A EY +++ E ++ V R +
Sbjct: 1758 TF---AGHSLGEYAALASLADVMSI-ESLVEV-----------V---------FYRGMTM 1793
Query: 475 TKELQRLKDTW-------INPSILNTG---ESERVLGKRIKHEYSLSNLLTWPNVNYN-- 522
+ R + INP + E+ + + +R+ + L VNYN
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR---TGWLVEI-VNYNVE 1849
Query: 523 --------------TLTS-LKGINGKNLYNTEIYQ----EDIKKQL 549
T+T+ L I + + E+ + E+++ L
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 30.0 bits (67), Expect = 3.2
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 40/136 (29%)
Query: 528 KGINGKNLYNT-----EIYQEDIKKQLKIQLQYEGYILRQINEVEKN------------- 569
+G+ G +LY T +++ K G+ + I V N
Sbjct: 1629 QGM-GMDLYKTSKAAQDVW-NRADNHFKDTY---GFSILDI--VINNPVNLTIHFGGEKG 1681
Query: 570 -KINEN---LKLPHNLD-YMKIQSLSIEARQKLNKYKPETIGQASRISGVT----PAALT 620
+I EN + +D +K + + E + Y + +S T PA
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR--SEKGLLS-ATQFTQPALTL 1738
Query: 621 L-LLIY--LKSGFLKN 633
+ + LKS L
Sbjct: 1739 MEKAAFEDLKSKGLIP 1754
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 53.9 bits (130), Expect = 7e-08
Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 41/174 (23%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL-------SHNIDTIGQMSCNPSIGGIGKSH 58
+DV+VVGGG G+ AA +A+ G KTL++ S C G+ K
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVR-------CG---EGLSK-G 52
Query: 59 LVKEIDAMGGIMAIATDKSGIQF-------------RILNSSKGAAVRATRAQVDRILYK 105
++ E D IA + G + + G + R + D+ L
Sbjct: 53 ILNEADIKADRSFIANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLE--RDKFDKHLAA 110
Query: 106 QAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIG---IKFFSKTVILTTG 156
A + + + +I + K+ G + + +K VI G
Sbjct: 111 LAAKAGAD-----VWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADG 159
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 50.2 bits (121), Expect = 8e-07
Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 44/154 (28%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEI 63
D V+G G AG A+LV R ++ L D + N +
Sbjct: 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIAL----FD--NNTNRN------------RVT 45
Query: 64 DAMGGIMAIATD-KSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 122
G I D +F+ I + +++ + ++
Sbjct: 46 QNSHGF--ITRDGIKPEEFK------------------EIGLNEVMKYPSV-----HYYE 80
Query: 123 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
+ V + ++ + +VTK K+ ++ V+L TG
Sbjct: 81 KTVVMITKQSTGLFEIVTKDHTKYLAERVLLATG 114
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 50.4 bits (120), Expect = 1e-06
Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 70/215 (32%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKT-------LLLSHNID-----TIGQMSCNPSIGG 53
D+++VGGG AA + R K L+ +++ G + N +G
Sbjct: 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGD 81
Query: 54 IGKSHLVKEI--DAMG------------------------GIMAIATDKSGIQFRILNSS 87
V+ + D MG G+ D+ G +
Sbjct: 82 NNADDYVRMVRTDLMGLVREDLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAK 141
Query: 88 KG--------AAVRATRAQVDR-------ILYKQAIRFYLENQLNLYLFQEEV--DDLII 130
VR+ R Q+ I+ + A +++ E + L++
Sbjct: 142 AAGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAAKNALGQDR-----IIERIFIVKLLL 196
Query: 131 KTN---KILGVVTKIGIK------FFSKTVILTTG 156
N +I G V ++ F + +++ G
Sbjct: 197 DKNTPNRIAGAVG-FNLRANEVHIFKANAMVVACG 230
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 46.0 bits (110), Expect = 2e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
KFDVI++GG +AG AAL R + LL+
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARKNILLV 31
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 46.5 bits (110), Expect = 2e-05
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 28/155 (18%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL---SHNIDTIGQMSCNPSIGGIGKSHLVK 61
FD+IV+GGG G+ A A G + LLL + IG+ S+ +
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGE-----SLLPATVHGICA 60
Query: 62 EIDAMGGIMAIA-TDKSGIQF--------------RILNSSKGAAVRATRAQVDRILYKQ 106
+ + K G F R + G A + RA+ D +L +
Sbjct: 61 MLGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRN 120
Query: 107 AIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTK 141
+ R ++ + EV D++ + + +GV +
Sbjct: 121 SERKGVD-----VRERHEVIDVLFEGERAVGVRYR 150
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 45.9 bits (109), Expect = 3e-05
Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 28/125 (22%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL---SHNIDTIGQMSCNPSIGGIGKSHLV 60
+ K DV+V+G G AGT AA + + G K ++ IG + +
Sbjct: 3 REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIG--------ESLLP-RCM 53
Query: 61 KEIDAMGGIMAIATD----KSGIQFR------------ILNSSKGAAVRATRAQVDRILY 104
+ +D G + A+ K G +F ++ + R D+ L
Sbjct: 54 EHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLA 113
Query: 105 KQAIR 109
+A R
Sbjct: 114 DEAAR 118
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 45.8 bits (109), Expect = 3e-05
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 57/162 (35%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSC-----N-PSIGGIGKS 57
+ +DV++VG G AG AA+ SAR G +T L+ GQ+ N S+
Sbjct: 210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFG--GQVLDTVDIENYISVPKTEGQ 267
Query: 58 HLVKEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRF---YLEN 114
L L + +++
Sbjct: 268 KLAGA----------------------------------------LKAHVSDYDVDVIDS 287
Query: 115 QLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
Q L + + + + T G ++++I+ TG
Sbjct: 288 QSASKLVPAATEGGLHQ------IETASGAVLKARSIIIATG 323
Score = 35.0 bits (81), Expect = 0.078
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 2 LFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
LFK K V V+GGG++G EAA+ A + + LL
Sbjct: 352 LFKGK-RVAVIGGGNSGVEAAIDLAGIVEHVTLL 384
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 44.3 bits (104), Expect = 7e-05
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 23/144 (15%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAA-LVSARMGQKTLLLSHNIDTIGQMSCNPSIGG--IGKS 57
M+ ++ DV+VVG G AG AA +S + ++ + S GG
Sbjct: 34 MITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ----------SVSPGGGAWLGG 83
Query: 58 HLVKEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLN 117
L + D+ G+ + V+ I+ K R N
Sbjct: 84 QLFSAMIVRKPAHLF-LDEIGVAYD--EQDTYVVVKHAALFTSTIMSKLLAR------PN 134
Query: 118 LYLFQE-EVDDLIIKTNKILGVVT 140
+ LF +DLI+K N++ GVVT
Sbjct: 135 VKLFNAVAAEDLIVKGNRVGGVVT 158
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 44.4 bits (106), Expect = 9e-05
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ---MS----CN 48
+ K DV+++G G AG A+ + + G++ L++ H G+ +S CN
Sbjct: 22 SMVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHA-RAPGEKIRISGGGRCN 75
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 44.0 bits (105), Expect = 1e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ---MS----CN 48
+ I++G G AG A A++G+ + + IG+ MS CN
Sbjct: 2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNG-KKIGRKILMSGGGFCN 52
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 42.1 bits (100), Expect = 1e-04
Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 58/157 (36%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAM 66
+DVIVVGGG +G AAL AR G K L+ +D
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKVLV----------------------------LDGG 33
Query: 67 GGIMAIATD-------KSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLY 119
+ + G + + R L A R+ E
Sbjct: 34 RSKVKGVSRVPNYPGLLDEPS--------GEEL------LRR-LEAHARRYGAE------ 72
Query: 120 LFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
+ V + + V T+ G+ ++ ++L T
Sbjct: 73 VRPGVVKG-VRDMGGVFEVETEEGV-EKAERLLLCTH 107
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 43.7 bits (104), Expect = 2e-04
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQ---MS----CN 48
+DVIV+GGG +G AA+ +A G LLL + +G+ +S CN
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKG-NKLGRKLAISGGGRCN 74
Score = 30.2 bits (69), Expect = 2.3
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 122 QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
V+ + + + V+ + G + V++ G
Sbjct: 154 NTPVETIEYENGQTKAVILQTGEVLETNHVVIAVG 188
Score = 28.3 bits (64), Expect = 8.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 356 SSLETKQIHGLFFAGQ---INGTT-GY--EEAASQGLLAGLNAALFSQDR 399
+ +K +GL+F G+ I+G T GY A G +AG A ++ +
Sbjct: 397 KEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENAKMQ 446
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 43.4 bits (102), Expect = 2e-04
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL---SHNIDTIG---QMSCNPSIGGIGKSH 58
++ V ++GGG AG+ A L ++G + + +G + +G
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQE 81
Query: 59 LVKEIDAM---GGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDR-----ILYKQAIR 109
+ + + D++ F V QV R +L +A
Sbjct: 82 KIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARS 140
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 42.7 bits (101), Expect = 3e-04
Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 80/214 (37%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLS----------------------------- 36
+FD +VVG G AG AA + G T ++
Sbjct: 18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWR 77
Query: 37 -HNIDTIG-----------QMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSGIQFRI- 83
H DT+ + V E++ G M + + G +I
Sbjct: 78 WHFYDTVKGSDWLGDQDAIHYMTEQAP------AAVIELENYG--MPFSRTEEG---KIY 126
Query: 84 --------LNSSKGAAVRATRAQVDRI-------LYKQAIRFYLENQLNLYLFQE-EVDD 127
L KG DR LY +++R+ + F E D
Sbjct: 127 QRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRY------DTSYFVEYFALD 180
Query: 128 LIIKTNKILGVVT---KIG--IKFFSKTVILTTG 156
L+++ + GV+ + G +F +K ++ TG
Sbjct: 181 LLMENGECRGVIALCIEDGTIHRFRAKNTVIATG 214
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 42.7 bits (101), Expect = 4e-04
Identities = 40/221 (18%), Positives = 65/221 (29%), Gaps = 78/221 (35%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL-------SHNIDTIGQMSCNPSIGGIGKS- 57
D +V+GGG AG AA+ + + G T++L SH+ G M S+G S
Sbjct: 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGM--QASLGNSKMSD 62
Query: 58 ------HL--------------------------VKEIDAMG----------GIMAIATD 75
H ++E+ A G + I
Sbjct: 63 GDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQ 122
Query: 76 KSGIQFRILNSSK-------GAAVRATRAQVDRI-------LYKQAIRFYLENQLNLYLF 121
K+ I G T D + + ++ + +
Sbjct: 123 KTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKL------GVSIQ 176
Query: 122 QE-EVDDLIIKTNKILGVVT---KIG--IKFFSKTVILTTG 156
E LI + K G V G I + +K ++ TG
Sbjct: 177 DRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATG 217
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 41.0 bits (97), Expect = 9e-04
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM 45
+ FDV++VG G AG AA+ +AR G +L + G
Sbjct: 14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAG-GLT 54
Score = 33.3 bits (77), Expect = 0.21
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQK-TLL 34
LFK K V+ +GGG++G AA+ + + T++
Sbjct: 151 YLFKGK-RVVTIGGGNSGAIAAISMSEYVKNVTII 184
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 41.2 bits (97), Expect = 0.001
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 20/81 (24%)
Query: 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKE 62
DV+VVG G AG AA+ + G K +L+ P IGG +
Sbjct: 123 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGG----NAKL- 167
Query: 63 IDAMGGIMAIATD---KSGIQ 80
A GG+ A TD I
Sbjct: 168 --AAGGMNAAWTDQQKAKKIT 186
Score = 29.3 bits (66), Expect = 4.8
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 21/89 (23%)
Query: 103 LYKQA----IRFYLENQLNLYLFQEEVDDLIIKTN-KILGVVTKIG----IKFFSKTVIL 153
LY A I + + +++ + G++ K + VIL
Sbjct: 261 LYDNAVKRNIDLRMNTR---------GIEVLKDDKGTVKGILVKGMYKGYYWVKADAVIL 311
Query: 154 TTGTFLNGKIHIGLKSYSAGRFGDFSTTS 182
TG F K + + F +T+
Sbjct: 312 ATGGF--AKNNERVAKL-DPSLKGFISTN 337
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 41.2 bits (97), Expect = 0.001
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKE 62
K DV+++G G AG AA+ + G K +LL + P GG +
Sbjct: 123 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLE-------KE---PIPGG----NTKL- 167
Query: 63 IDAMGGIMAIATD---KSGIQ 80
A GG+ A T K GI+
Sbjct: 168 --AAGGMNAAETKPQAKLGIE 186
Score = 28.5 bits (64), Expect = 7.9
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 21/91 (23%)
Query: 101 RILYKQA----IRFYLENQLNLYLFQEEVDDLIIKTN-KILGVVTKIG----IKFFSKTV 151
++L+ A L ++ V ++ + K+ GV+ K + V
Sbjct: 259 QVLWDNAVKRGTDIRLNSR---------VVRILEDASGKVTGVLVKGEYTGYYVIKADAV 309
Query: 152 ILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 182
++ G F K + + Y + F T+
Sbjct: 310 VIAAGGF--AKNNERVSKY-DPKLKGFKATN 337
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 41.2 bits (97), Expect = 0.001
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ + DV+V G G AG A++ +AR G L+L
Sbjct: 38 WDYEADVVVAGYGIAGVAASIEAARAGADVLVL 70
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 40.8 bits (96), Expect = 0.001
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
K+D+I++G G G A + R G L+
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMT 31
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 40.8 bits (96), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
V+VVG G AG A+L + + G +L+
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKKAGANVILV 150
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 40.3 bits (94), Expect = 0.002
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLL-----------LSHNIDTIGQMSCNPSIGGIGK 56
DV+VVG G AG AA ++R G + +L L + I M + I
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWI----- 184
Query: 57 SHLVKEIDAMGGI 69
+ E+
Sbjct: 185 EQVTSELAEAEET 197
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 39.8 bits (94), Expect = 0.002
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 57/159 (35%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSC-----N-PSIGGIGKSHLV 60
+DV++VG G AG AA+ SAR G +T L+ GQ+ N S+ L
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG--GQILDTVDIENYISVPKTEGQKLA 59
Query: 61 KEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRF---YLENQLN 117
A+ + +++Q
Sbjct: 60 ---GAL-------------------------------------KVHVDEYDVDVIDSQSA 79
Query: 118 LYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
L V+ + + + T G ++++I+ TG
Sbjct: 80 SKLIPAAVEGGLHQ------IETASGAVLKARSIIVATG 112
Score = 34.0 bits (79), Expect = 0.13
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 2 LFKSKFDVIVVGGGHAGTEAALVSARMGQK-TLL 34
LFK K V V+GGG++G EAA+ A + + TLL
Sbjct: 141 LFKGK-RVAVIGGGNSGVEAAIDLAGIVEHVTLL 173
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 40.0 bits (93), Expect = 0.002
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 25/174 (14%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEI 63
IV+G G G A LV A+MG +++ + + + + G + +
Sbjct: 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE-VRERTK--DTFGFWRKRTLNPE 161
Query: 64 DAM------------GGIMAIATDKSGIQFRILN---------SSKGAAVRATRAQVDRI 102
+ G + + D + +++ +
Sbjct: 162 SNVQFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVT 221
Query: 103 LYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
+ ++ +E + F VDDL ++ +I GV G + S+ V+L G
Sbjct: 222 MIEKMRATIIELGGEIR-FSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVG 274
Score = 33.8 bits (77), Expect = 0.20
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 301 EGIVINEYYPNGISTSLPFEAQIELVQSI-DGMKNANIIRPG--------YAIEYDYFNP 351
G V + P T L V++I + + + G +E +P
Sbjct: 435 LGDVEPSFTPGIKLTDLSKALPPFAVEAIREAIPAFDRKIKGFASEDGLLTGVETRTSSP 494
Query: 352 CNLK--SSLETKQIHGLFFAGQINGTT-GYEEAASQGLLAG 389
+K ++ + G + AG+ G G A G+
Sbjct: 495 VCIKRGKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVA 535
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 39.9 bits (94), Expect = 0.002
Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 64/192 (33%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLLS---------------------------HNIDT 41
+ ++G G AG A + R G+K L+S H DT
Sbjct: 2 IYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDT 61
Query: 42 I--GQMSCNPSIGGIGKSHLVKEIDAMGGIMAIAT-DKSGIQF-------------RILN 85
I G C+ +++ E I T + G +F R+L+
Sbjct: 62 IRVGDGLCDVKT----VNYVTSE-----AKNVIETFESWGFEFEEDLRLEGGHTKRRVLH 112
Query: 86 SSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGV-VTKIGI 144
T ++ L K A + + + ++ + ++ +K K+ G K G+
Sbjct: 113 -----RTDETGREIFNFLLKLA------REEGIPIIEDRLVEIRVKDGKVTGFVTEKRGL 161
Query: 145 KFFSKTVILTTG 156
++L TG
Sbjct: 162 VEDVDKLVLATG 173
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 39.9 bits (94), Expect = 0.002
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLS 36
+FD +V+G G AG AAL ++ GQ LLS
Sbjct: 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLS 37
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 39.4 bits (92), Expect = 0.003
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+DV+VVGGG G A A G + L+L
Sbjct: 2 TESYDVVVVGGGPVGLATAWQVAERGHRVLVL 33
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 39.2 bits (92), Expect = 0.003
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ FDVIVVG G G A A+ G KTLL+
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 38.7 bits (91), Expect = 0.004
Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 43/154 (27%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG-QMSCNPSIGGIGKSHLV--KE 62
DV++VG G G A G + + G Q++ L K
Sbjct: 5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVD-PLPEPGGQLT-----------ALYPEKY 52
Query: 63 IDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 122
I + G + + V L +Q F L
Sbjct: 53 IYDVAGFPKV---------------YAKDL------VKG-LVEQVAPFNPVYSLG----- 85
Query: 123 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
E + + + + V T G + +K VI+ G
Sbjct: 86 ERAET-LEREGDLFKVTTSQGNAYTAKAVIIAAG 118
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 38.7 bits (91), Expect = 0.005
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG----QMSCNPSIGGIGKSHLV 60
V V+G G A AAL + G + L+ TIG + C PS I +H+
Sbjct: 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIER--GTIGGTCVNVGCVPSKIMIRAAHIA 60
Query: 61 KEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRA-TRAQVDRILYKQ 106
IA I L + + A V A+ + IL
Sbjct: 61 HLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGN 107
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 38.3 bits (88), Expect = 0.007
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
K+DV++VG G G A G K +
Sbjct: 46 KYDVVIVGSGPIGCTYARELVGAGYKVAMF 75
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 38.3 bits (90), Expect = 0.008
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGG 53
KFDVIV+G G G AA+ SA++G KT L I+ ++GG
Sbjct: 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTAL----IEKYKGKEGKTALGG 46
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 37.7 bits (88), Expect = 0.008
Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 42/154 (27%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDA 65
D+ ++GGG G AA + I+++ Q+
Sbjct: 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRI----IESMPQL-------------------- 49
Query: 66 MGG-IMAIATDKSGIQFRILNSSKGAAVRATRAQ--VDRILYKQAIRFYLENQLNLYLFQ 122
GG + A+ +K I + A A V+ L+ QA R+ + LN
Sbjct: 50 -GGQLAALYPEK-----HIYDV---AGFPEVPAIDLVES-LWAQAERYNPDVVLN----- 94
Query: 123 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
E V + T G + S+ V++ G
Sbjct: 95 ETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAG 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.009
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 10/31 (32%)
Query: 105 KQAIRFYLENQLNLYLFQEEVDD----LIIK 131
KQA++ L+ L LY DD L IK
Sbjct: 19 KQALK-KLQASLKLY-----ADDSAPALAIK 43
Score = 34.2 bits (77), Expect = 0.053
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 30/54 (55%)
Query: 567 EKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPA-AL 619
EK + KL +A KL Y ++ PA A+
Sbjct: 18 EKQALK---KL--------------QASLKL--YADDS----------APALAI 42
Score = 28.8 bits (63), Expect = 3.8
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 291 KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIE 324
KK L+ + Y + + +L +A +E
Sbjct: 23 KK-----LQAS---LKLYADDS-APALAIKATME 47
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 37.5 bits (86), Expect = 0.011
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 26/149 (17%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAA--LVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSH 58
+ + DVI+VG G +G AA + R K ++ + G S +GG S
Sbjct: 60 LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS-VAPGGGSW---LGGQLFSA 115
Query: 59 LVKEIDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 118
+V A + + I + + V+ + +L K N+
Sbjct: 116 MVMRKPAHLFL-----QELEIPYE--DEGDYVVVKHAALFISTVLSKVLQL------PNV 162
Query: 119 YLFQE-EVDDLIIKT------NKILGVVT 140
LF V+DL+ + + GVVT
Sbjct: 163 KLFNATCVEDLVTRPPTEKGEVTVAGVVT 191
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 37.7 bits (88), Expect = 0.011
Identities = 34/206 (16%), Positives = 67/206 (32%), Gaps = 71/206 (34%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQ--KTLLLS--------------------------- 36
+ D+ +VG G AG AA+ +A+ K L+S
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFE 64
Query: 37 -HNIDTI-G----------QMSCNPSIGGIGKSHLVKEIDAMGGIMAIATDKSG-IQFRI 83
H DT+ G + + +++ G + G + R
Sbjct: 65 YHFHDTVAGGDWLCEQDVVDYFVHHCPT------EMTQLELWG--CPWSRRPDGSVNVRR 116
Query: 84 LNSSKGAAVRATRAQVDRI-------LYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKI 135
G + T D+ L++ +++F + F E V D+++ +
Sbjct: 117 FG---GMKIERTWFAADKTGFHMLHTLFQTSLQFP-----QIQRFDEHFVLDILVDDGHV 168
Query: 136 LGVVT---KIG--IKFFSKTVILTTG 156
G+V G ++ + V++ TG
Sbjct: 169 RGLVAMNMMEGTLVQIRANAVVMATG 194
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 37.3 bits (86), Expect = 0.013
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+V+G G+ +AL G +TL+L
Sbjct: 6 VPAVVIGTGYGAAVSALRLGEAGVQTLML 34
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 37.1 bits (86), Expect = 0.020
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 6 KFDVIVVGGGHAGTEAALVSARM----GQKTLLLS 36
+ D++++GGG +G AA +A G K L+
Sbjct: 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 36.3 bits (84), Expect = 0.026
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+D IVVGGG +G +AA G+K LLL
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLL 30
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 36.5 bits (85), Expect = 0.028
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLL 34
++D I +GGG AG + MG + L+
Sbjct: 42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLI 71
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 35.9 bits (84), Expect = 0.029
Identities = 36/157 (22%), Positives = 53/157 (33%), Gaps = 55/157 (35%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDA 65
KFDVI+VG G A AAL SAR KTL+ IG++
Sbjct: 15 KFDVIIVGLGPAAYGAALYSARYMLKTLV-------------------IGETP------- 48
Query: 66 MGGIMAIATD------KSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLY 119
GG + A IQ + + + K ++ +
Sbjct: 49 -GGQLTEAGIVDDYLGLIEIQ--------ASDM------IKV-FNKHIEKYEVP------ 86
Query: 120 LFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
+ + V+ I V TK +F + +VIL G
Sbjct: 87 VLLDIVEK-IENRGDEFVVKTKRKGEFKADSVILGIG 122
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 36.0 bits (84), Expect = 0.029
Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 39/152 (25%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGG-IGKSHLVKEID 64
+D+ ++GGG G A + I+++ Q +GG + + K I
Sbjct: 7 VYDITIIGGGPVGLFTAFYGGMRQASVKI----IESLPQ------LGGQLSALYPEKYIY 56
Query: 65 AMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEE 124
+ G I + ++ L +Q +F L +
Sbjct: 57 DVAGFPKI----RAQEL-----------------INN-LKEQMAKFDQTICLE-----QA 89
Query: 125 VDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
V+ + + + + +VT +SKTVI+T G
Sbjct: 90 VESVEKQADGVFKLVTNEE-THYSKTVIITAG 120
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 36.3 bits (83), Expect = 0.032
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ +V+G G+ G AAL + G T ++
Sbjct: 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIV 40
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 35.5 bits (81), Expect = 0.047
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 20/140 (14%)
Query: 7 FDVIVVGGGHAGTEAA--LVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEID 64
D+++VG G G AA L + R + ++ G GG +
Sbjct: 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG-VAPG--------GGAWLGGQLFSAM 130
Query: 65 AMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQE- 123
M + D+ G+ + + V+ +L K + N+ LF
Sbjct: 131 VMRKPADVFLDEVGVPYE--DEGDYVVVKHAALFTSTVLSKVL------QRPNVKLFNAT 182
Query: 124 EVDDLIIKTNKILGVVTKIG 143
V+DLI + + +
Sbjct: 183 TVEDLITRKHHAESSSSSDD 202
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 35.6 bits (81), Expect = 0.053
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHN 38
++DVIV+G G + + + G+K L + N
Sbjct: 5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN 38
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 35.0 bits (80), Expect = 0.057
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM 45
M+ V+G G+ G A A GQ L + I ++
Sbjct: 1 MIESKT--YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEI 43
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 35.2 bits (81), Expect = 0.063
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 122 QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
Q V LI + N + G VT G + ++ L G
Sbjct: 184 QGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAG 218
Score = 29.4 bits (66), Expect = 4.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
M +++VG G GT AL AR G + +
Sbjct: 1 MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTV 35
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 35.4 bits (82), Expect = 0.066
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+D+IV+GGG G A +A+ G KT +L
Sbjct: 108 YDLIVIGGGSGGLAAGKEAAKYGAKTAVL 136
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 35.2 bits (82), Expect = 0.068
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIG 55
+D+IV+GGG AG A + G + +D + + G+G
Sbjct: 10 YDLIVIGGGSAGLACAKEAVLNGARVAC----LDFVKPTPTLGTKWGVG 54
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 35.2 bits (82), Expect = 0.068
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLL 34
M +D+IV+G G G AA+ +A++G K L
Sbjct: 1 MTPMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLA 34
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 34.9 bits (81), Expect = 0.084
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+D+I++GGG G AA +A+ G+K ++L
Sbjct: 32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 61
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 34.8 bits (81), Expect = 0.086
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
FD++V+GGG G A +A++G+K +
Sbjct: 6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVA 35
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 34.5 bits (79), Expect = 0.10
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+DVIV+GGG+ G A G KTLLL
Sbjct: 37 DGPWDVIVIGGGYCGLTATRDLTVAGFKTLLL 68
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 34.4 bits (79), Expect = 0.11
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43
+K DV+VVGGG +G AA + G ++L D +G
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEAR-DRVG 40
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 34.6 bits (80), Expect = 0.11
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 9 VIVVGGGHAGTEAALVSARMG 29
V+VVG G +G EAA G
Sbjct: 394 VLVVGAGPSGLEAARALGVRG 414
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 34.5 bits (80), Expect = 0.11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKT 32
++++GGG AG EAALV+A +T
Sbjct: 2 VTRIVILGGGPAGYEAALVAATSHPET 28
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 34.4 bits (80), Expect = 0.11
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 3 FKSKFDVIVVGGGHAGTEAALVSARMGQKTLL 34
+++DV+V+GGG G AA +A G K +
Sbjct: 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAI 34
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 34.3 bits (77), Expect = 0.12
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 2 LFKSKFDVIVVGGGHAGTEAALVSARM--GQKTLLL 35
+ FD++V+G G G A ++ G+ LL+
Sbjct: 32 FTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLV 67
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 34.3 bits (79), Expect = 0.12
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
+VVG G G A AR G + ++L
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEIIVL 29
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 34.2 bits (79), Expect = 0.12
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 2 LFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ + + D++V+GGG G AL + G +T L+
Sbjct: 14 MSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLV 47
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 34.1 bits (79), Expect = 0.12
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
ML K +++V+GGG G A A+ G++ ++
Sbjct: 1 ML-PEKSEIVVIGGGIVGVTIAHELAKRGEEVTVI 34
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 34.3 bits (79), Expect = 0.13
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 9 VIVVGGGHAGTEAALVSARMG 29
V++VG G +G+EAA V G
Sbjct: 392 VLIVGAGPSGSEAARVLMESG 412
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 34.4 bits (80), Expect = 0.13
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+D +V+GGG G +A +A G KTLL+
Sbjct: 11 HYDYLVIGGGSGGVASARRAASYGAKTLLV 40
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 34.1 bits (79), Expect = 0.13
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLL 34
+D+IV+GGG G AA +AR K L
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNAKVAL 30
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 34.2 bits (79), Expect = 0.13
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 2 LFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ + + D++++GGG G A+ +A G KT L+
Sbjct: 28 MQQEELDLLIIGGGITGAGVAVQAAASGIKTGLI 61
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 34.0 bits (79), Expect = 0.13
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+D +V+GGG G +A +A +G + ++
Sbjct: 21 YDYLVIGGGSGGLASARRAAELGARAAVV 49
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 34.1 bits (79), Expect = 0.13
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKT 32
+D+IV+G G G A+ +A++G K
Sbjct: 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKV 51
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 34.3 bits (79), Expect = 0.14
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
+V+G G G +A ++ G + +
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVF 29
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 34.1 bits (79), Expect = 0.14
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
K ++ +V+GGG G+ A A+ + T L
Sbjct: 15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALF 46
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 34.0 bits (79), Expect = 0.15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
FD+I +GGG G A +A G++ L+
Sbjct: 5 FDLIAIGGGSGGLAVAEKAAAFGKRVALI 33
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 34.1 bits (79), Expect = 0.15
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLL 34
DV ++G G AG A + + K +L
Sbjct: 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVL 36
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 34.0 bits (79), Expect = 0.15
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKT 32
+ +DV+V+G G G AA+ +A++G T
Sbjct: 2 THYDVVVLGAGPGGYVAAIRAAQLGLST 29
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 34.0 bits (79), Expect = 0.16
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLL 34
+DV+V+GGG G A++ +A++G KT
Sbjct: 2 PYDVVVIGGGPGGYVASIKAAQLGMKTAC 30
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 33.8 bits (78), Expect = 0.16
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLL 34
+ DV+++G G AG AL A Q +L
Sbjct: 6 EHSCDVLIIGSGAAGLSLALRLADQHQVIVL 36
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 34.0 bits (79), Expect = 0.16
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLL 34
+ + +VVG G G AA+ +A++GQK +
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTI 31
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 33.6 bits (78), Expect = 0.17
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
FD+ V+G G G AA ++ +G++ +
Sbjct: 27 FDLFVIGSGSGGVRAARLAGALGKRVAIA 55
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 33.6 bits (78), Expect = 0.17
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+D+ V+GGG G + ++A +G+K +
Sbjct: 6 YDLFVIGGGSGGVRSGRLAAALGKKVAIA 34
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 33.7 bits (76), Expect = 0.18
Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 9/153 (5%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEI 63
+ +DVIV+G G + + + G+K L + D G + + ++ + + I
Sbjct: 9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQ-DHYGGEAASVTLSQLYEKFKQNPI 67
Query: 64 DAMGGIMAIATDKS-----GIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 118
D+ +F + N + T + +KQ Y+ Q +
Sbjct: 68 SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVT-RYVDFKQVSGSYVFKQGKI 126
Query: 119 YLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTV 151
Y + ++ ++G+ K +K F + +
Sbjct: 127 YKVPANEIE--AISSPLMGIFEKRRMKKFLEWI 157
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 33.6 bits (78), Expect = 0.18
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLL 34
DV V+G G G AA+ +A++G KT+
Sbjct: 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVC 34
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 33.8 bits (78), Expect = 0.19
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLL 35
+ VVG G AG A+ +A G + L
Sbjct: 376 LAVVGAGPAGLAFAINAAARGHQVTLF 402
Score = 29.6 bits (67), Expect = 3.5
Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 25/153 (16%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQK-TLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAM 66
V ++G G G + A+ ++ G+ + ++ + G S GG+ +I
Sbjct: 496 KVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSP--QGMQIPRS 553
Query: 67 GGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVD 126
+ + K+ + L + G R T L + ++ +++D
Sbjct: 554 PRQIVMLQRKASKPGQGLGKTTGWIHRTT-------LLSRGVKMIPGVSY------QKID 600
Query: 127 D--LIIKTNKILGVVTKIGIKFFSKTVILTTGT 157
D L + N G + + V++ G
Sbjct: 601 DDGLHVVIN---GETQVLAV----DNVVICAGQ 626
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 33.6 bits (78), Expect = 0.19
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLL 34
+ ++++GGG G AA+ + ++G T+L
Sbjct: 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVL 33
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 33.6 bits (78), Expect = 0.20
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKT 32
+ DV+++GGG G AA+ +A++G KT
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAAQLGFKT 32
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 33.6 bits (78), Expect = 0.20
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+D I +GGG G + +A GQK L+
Sbjct: 5 YDYIAIGGGSGGIASINRAAMYGQKCALI 33
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 33.3 bits (77), Expect = 0.23
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKT 32
DV+++GGG AG AA+ +A++G T
Sbjct: 5 SHDVVIIGGGPAGYVAAIKAAQLGFNT 31
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 33.3 bits (77), Expect = 0.23
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLL 34
K+DV+V+G G AG A A+ L+
Sbjct: 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLM 32
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 32.9 bits (76), Expect = 0.25
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 53/157 (33%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEIDAM 66
DV ++GGG AG A L + R G K +++
Sbjct: 5 LDVAIIGGGPAGLSAGLYATRGGLKNVVM---------------FEKG----------MP 39
Query: 67 GGIMAIATD-------KSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLY 119
GG + +++ + G + + +Q +RF L+
Sbjct: 40 GGQITSSSEIENYPGVAQVMD--------GISF------MAP-WSEQCMRFGLK------ 78
Query: 120 LFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 156
V+ ++ ++ + + G +K VI+ TG
Sbjct: 79 HEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTG 115
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 33.3 bits (75), Expect = 0.25
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 2 LFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQMSCNPSIGGIGKSH 58
+DVI++G G + + + G+K L+L N G + + ++ + +
Sbjct: 16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRN-PYYGGETASLNLTNLYNTF 71
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 32.4 bits (75), Expect = 0.44
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM 45
V+V+G G AG AA ++ MG +L NID + Q+
Sbjct: 171 VVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 32.5 bits (73), Expect = 0.45
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 9 VIVVGGGHAGT-EAALVSARMGQKTLLLSHN---IDTIGQMSCNPSIGGIGKSHLVKEID 64
V V GGG+ + L ++R G + +L+ + + + I + +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 65 AMGGIMAIATD 75
I D
Sbjct: 65 VKSRPKVITKD 75
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 32.4 bits (75), Expect = 0.48
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNID 40
V+++GGG GTEAA ++ +G + + N++
Sbjct: 170 VVILGGGVVGTEAAKMAVGLGAQVQIFDINVE 201
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 32.4 bits (75), Expect = 0.48
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNID 40
V+++GGG GT AA ++ MG + +L N
Sbjct: 169 VVILGGGTVGTNAAKIALGMGAQVTILDVNHK 200
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide
dehydrogenase, 2-oxoglutarate dehydrogenase comple
pyruvate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus} PDB: 2eq7_A*
Length = 455
Score = 32.1 bits (74), Expect = 0.53
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKT 32
+D++V+G G G AA+ +A++G K
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKV 27
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.0 bits (73), Expect = 0.66
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 5 SKFDVIVVGGGHAGTEAA 22
S +++GGG A AA
Sbjct: 10 SHVPFLLIGGGTAAFAAA 27
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ B reduced izoalloxazine bending, oxidoreductase;
HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 31.7 bits (73), Expect = 0.74
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIGQM 45
D ++GGG AG A L + R G K +L GQ+
Sbjct: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQI 40
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 31.9 bits (72), Expect = 0.74
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
DV ++GGG AG AAL + L+
Sbjct: 110 DVAIIGGGPAGIGAALELQQ-YLTVALI 136
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 31.3 bits (71), Expect = 0.83
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMG 29
+ S+ V V+G G G A A +G
Sbjct: 154 TIHGSQ--VAVLGLGRTGMTIARTFAALG 180
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 31.4 bits (72), Expect = 0.88
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
DV++ G G G A + R G + +++
Sbjct: 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVV 35
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 31.6 bits (70), Expect = 0.88
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 9 VIVVGGGHAG-TEAALVSARMGQK---TLLLSHNIDTIGQMSCNPSIGGIGKSHLVKEID 64
V++VGGG AG A+ + A + TL+ S N+ IG + + +D
Sbjct: 5 VVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIG--VGEATFSTVRHFFDYLGLD 62
Query: 65 AMGGIMAI-ATDKSGIQFR 82
+ K GI+F
Sbjct: 63 EREWLPRCAGGYKLGIRFE 81
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 31.2 bits (71), Expect = 0.99
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ DV +VG G +G AA + G ++
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVI 34
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 31.4 bits (71), Expect = 1.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
K V+V+GGG AG +A + G K +L
Sbjct: 9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVL 40
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 31.0 bits (71), Expect = 1.2
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 6 KFDVIVVGGGHAGTEAALVSARM-GQKTLLL 35
FD++V+G G G EA +A + G++ ++
Sbjct: 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVV 37
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 31.0 bits (71), Expect = 1.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 7 FDVIVVGGGHAGTEAALVSARMGQKTLLL 35
D+IV+GGG G A +A G L+L
Sbjct: 4 KDLIVIGGGINGAGIAADAAGRGLSVLML 32
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 31.0 bits (71), Expect = 1.3
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 6 KFDVIVVGGGHAGTEAALVSARM-GQKTLLL 35
+D++V+G G G EA +A + ++ ++
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVI 33
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 31.1 bits (71), Expect = 1.3
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 5 SKFDVIVVGGGHAGTEAA--LVSARMGQKTLLL 35
+ D +V+G G AG L + G+ +L
Sbjct: 8 IEADYLVIGAGIAGASTGYWL--SAHGRVVVLE 38
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding,
oxidoreduc electron transport; HET: HEC; 2.3A
{Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB:
1eb7_A*
Length = 323
Score = 30.7 bits (70), Expect = 1.3
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 105 KQAIRFYLENQLNLYLFQEEVDDLI 129
K A+ QL L ++V++++
Sbjct: 269 KDAVAIMGNAQLGKQLAPDDVENIV 293
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 30.9 bits (71), Expect = 1.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 9 VIVVGGGHAGTEAA 22
VIVVG HAGT A
Sbjct: 3 VIVVGCTHAGTFAV 16
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 30.9 bits (71), Expect = 1.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 9 VIVVGGGHAGTEAA 22
VIV+G H G EA
Sbjct: 3 VIVLGSSHGGYEAV 16
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide,
oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Length = 320
Score = 30.7 bits (70), Expect = 1.5
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 105 KQAIRFYLENQLNLYLFQEEVDDLI 129
++A+ + QL L ++E +++
Sbjct: 260 EEAVNTMADIQLGQKLTEKETKEMV 284
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 30.6 bits (70), Expect = 1.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 9 VIVVGGGHAGTEAALVSAR 27
++VVG HAGT
Sbjct: 38 IVVVGANHAGTACIKTMLT 56
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision,
ammonia-oxidizing bacteria, oxidoreductase; HET: HEM;
1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Length = 308
Score = 30.7 bits (70), Expect = 1.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 105 KQAIRFYLENQLNLYLFQEEVDDLI 129
+QA+ QLN ++EV ++
Sbjct: 252 EQAVETMGRIQLNREFNKDEVSKIV 276
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC;
2.70A {Rhodobacter capsulatus}
Length = 328
Score = 30.7 bits (70), Expect = 1.6
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 105 KQAIRFYLENQLNLYLFQEEVDDLI 129
++A+ +QL L +VD +
Sbjct: 272 REAVSVMANSQLGATLDDTQVDQIT 296
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 30.5 bits (70), Expect = 1.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 9 VIVVGGGHAGTEAA 22
++++G AG AA
Sbjct: 5 IVIIGASFAGISAA 18
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 30.5 bits (69), Expect = 1.7
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
V ++G G AG A+ G +++
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVII 33
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 30.6 bits (70), Expect = 1.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 8 DVIVVGGGHAGTEAA 22
DV++VG GH G +AA
Sbjct: 11 DVVIVGAGHGGAQAA 25
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 30.6 bits (70), Expect = 1.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 9 VIVVGGGHAGTEAA 22
+++GG AG AA
Sbjct: 39 YVIIGGDAAGMSAA 52
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 30.6 bits (70), Expect = 1.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 8 DVIVVGGGHAGTEAA 22
+V++VG G AG E A
Sbjct: 6 NVVIVGTGLAGVEVA 20
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 30.6 bits (69), Expect = 1.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
V++VG G AG AA V A G + +L
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVL 62
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 30.3 bits (69), Expect = 1.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 4 KSKFDVIVVGGGHAGTEAA 22
K +D I+VGGG G A
Sbjct: 19 KKSYDAIIVGGGGHGLATA 37
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A
{Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Length = 345
Score = 30.4 bits (69), Expect = 1.9
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 105 KQAIRFYLENQLNLYLFQEEVDDLI 129
K+A+ Q + L +E + +
Sbjct: 291 KEAVAVMGSAQFGIKLSDDESEAIA 315
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 30.5 bits (70), Expect = 2.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 9 VIVVGGGHAGTEAA 22
V+++GGG AG AA
Sbjct: 6 VVIIGGGAAGMSAA 19
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 30.1 bits (69), Expect = 2.0
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 9 VIVVGGGHAGTEAA 22
++VVG G A
Sbjct: 4 IVVVGAVAGGATCA 17
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 30.3 bits (68), Expect = 2.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
M + +V VVGGG +G A G +LL
Sbjct: 11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLL 45
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD;
1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A*
2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 30.2 bits (69), Expect = 2.1
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 8 DVIVVGGGHAGTEAA 22
V+V+G G A
Sbjct: 9 PVVVLGAGLASVSFV 23
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 30.2 bits (69), Expect = 2.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 6 KFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+DV+++GGG AG AA+ + R TL+L
Sbjct: 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLIL 37
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 30.2 bits (69), Expect = 2.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 9 VIVVGGGHAGTEAA 22
V+V+G G +AA
Sbjct: 6 VVVIGAVALGPKAA 19
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 30.3 bits (69), Expect = 2.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 9 VIVVGGGHAGTEAA 22
++VVGG G A
Sbjct: 39 IVVVGGVAGGASVA 52
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 30.3 bits (69), Expect = 2.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
VIVVG G AG A G ++L
Sbjct: 14 SVIVVGAGPAGLMLAGELRLGGVDVMVL 41
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron
transport; HET: HEM CIT; 2.20A {Marinobacter
hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB:
1rz5_A* 1rz6_A*
Length = 326
Score = 30.0 bits (68), Expect = 2.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 105 KQAIRFYLENQLNLYLFQEEVDDLI 129
++A+ QL L +EV ++
Sbjct: 269 EEAVAVMGTAQLGTELNNDEVKSIV 293
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 30.3 bits (69), Expect = 2.4
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 9 VIVVGGGHAGTEAA 22
++++GG G AA
Sbjct: 4 ILIIGGVAGGASAA 17
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 30.0 bits (68), Expect = 2.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
DV+VVGGG G A G L+L
Sbjct: 51 DVVVVGGGPVGLMLAGELRAGGVGALVL 78
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme,
oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus
pantotrophus} PDB: 2c1u_A*
Length = 338
Score = 30.0 bits (68), Expect = 2.6
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 105 KQAIRFYLENQLNLYLFQEEVDDLI 129
+A++ Q+ L ++ +D+
Sbjct: 283 AEAVKIMSSAQIGTELTDQQAEDIT 307
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic
hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas
putida}
Length = 410
Score = 29.8 bits (68), Expect = 2.7
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 8 DVIVVGGGHAGTEAA 22
V ++G G G A
Sbjct: 4 HVAIIGNGVGGFTTA 18
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 29.9 bits (67), Expect = 2.7
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 9 VIVVGGGHAG--TEA---ALVSARMGQKTLLLS----HNIDTIGQMSCNPSIGGI-GKSH 58
+ V G G G T + A+ A++ + LLLS HN+ + G +
Sbjct: 19 IFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDN 78
Query: 59 L-VKEIDA 65
L EID
Sbjct: 79 LYAMEIDP 86
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 30.0 bits (68), Expect = 2.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
VIVVG G AG A G + ++L
Sbjct: 13 AVIVVGAGPAGMMLAGELRLAGVEVVVL 40
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 29.9 bits (67), Expect = 2.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 5 SKFDVIVVGGGHAGTEAALVSARM-GQKTLLL 35
S+ DV++VG G AG A A +T ++
Sbjct: 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIV 62
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 30.0 bits (68), Expect = 3.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
DV+VVG G G A+ AR G + L++
Sbjct: 7 DVLVVGAGLGGLSTAMFLARQGVRVLVV 34
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 29.8 bits (66), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+K VI++G G AG +AA + G + L+
Sbjct: 6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 29.8 bits (68), Expect = 3.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 9 VIVVGGGHAGTEAA 22
V++ G GHAG + A
Sbjct: 4 VLIAGAGHAGFQVA 17
>3s63_A Na-SLP-1, saposin-like protein; lipid-binding, lipid binding
protein; 2.70A {Necator americanus}
Length = 117
Score = 28.3 bits (62), Expect = 3.2
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 175 FGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKM-------EEQIGDFDPVPV 227
FG F ++R QL H + +R + K+ E G F P+ V
Sbjct: 18 FGHFGGNIPSRRKLVHQLKH---ECKRHFNYRRRCLLLMKVNSDLIFREMTDGSFKPMEV 74
Query: 228 FSVLGNINLHPKQLSCFITHTNEKTHNIIRSE 259
++ N H L + + +
Sbjct: 75 CLIMRECNPHDSPLEPEMIDKSGQPEAFALVS 106
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding
protein; NMR {Drosophila melanogaster}
Length = 73
Score = 27.2 bits (61), Expect = 3.2
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 435 EYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKRE 472
+ R +++ +N +++TEI K G + WK + K +
Sbjct: 17 DTRESIKRENPGIKVTEIAKKGG----EMWKELKDKSK 50
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 29.5 bits (67), Expect = 3.4
Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 34/168 (20%)
Query: 5 SKFDVIVVG---------------------------GGHAGTEA--ALVSARMGQKTLLL 35
DVI +G G A + +R+G +T L+
Sbjct: 4 DNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTALM 63
Query: 36 SH--NIDTIGQMSCNPSIG-GIGKSHLVKEIDAMGGIMAIATDKSGIQFRILNSSKGAAV 92
S D GQ + I L +++ I + G + + + G+
Sbjct: 64 SRIGK-DAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDG-ERTFVTNRNGSLW 121
Query: 93 RATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVT 140
+ VD + QA L + N L + I K ++
Sbjct: 122 KLNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQMII 169
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 29.4 bits (66), Expect = 4.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+FD +VVG G G AA ++L+
Sbjct: 21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLV 52
>3nm9_A HMG-D, high mobility group protein D; DNA bending,
non-sequence-specific, HMG chromosomal protein; HET:
DNA; 2.85A {Drosophila melanogaster} PDB: 1e7j_A* 1hma_A
1qrv_A*
Length = 73
Score = 26.9 bits (60), Expect = 4.2
Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 426 PYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKRE 472
Y ++ + R +++ +N +++TE+ + G + W+ + K E
Sbjct: 10 AYALWLN--SARESIKRENPGIKVTEVAKRGG----ELWRAMKDKSE 50
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 29.1 bits (65), Expect = 4.2
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 10/46 (21%)
Query: 9 VIVVGGGHAG--TEA---ALVSARMGQKTLLLS----HNI-DTIGQ 44
V + G G G T + AL AR G+KTL++S H++ D++ +
Sbjct: 17 VFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLER 62
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural
genomics, PSI, protein structure initiative; HET: GLC;
1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Length = 146
Score = 28.5 bits (64), Expect = 4.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 174 RFGDF------STTSLAKRLKELQLSHG---RLKTGTPPR 204
RFG+F + LA RL+ L HG + +
Sbjct: 39 RFGEFQKSLGLAKNILAARLRNLV-EHGVMVAVPAESGSH 77
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 29.3 bits (65), Expect = 4.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
FD ++VG G AG+ A A GQ+ L++
Sbjct: 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIV 58
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.2 bits (64), Expect = 4.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHNIDTIG 43
+++VG G AG A + R G +L N + +G
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVG 81
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 29.0 bits (66), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHN---IDTIGQMSCNP 49
+ ++G G GT ALV AR GQK L S+ +D + N
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNN 75
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 29.1 bits (65), Expect = 4.9
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 8 DVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ ++G G AG A + + G +
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTI 35
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 29.3 bits (64), Expect = 4.9
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 16/96 (16%)
Query: 1 MLFKSKFDVIVVGGGHAGTEAALVSARMGQK-------------TLLLSHNIDTIGQMSC 47
M+ K ++I+VGGG AG A + A TL+ S ++ TIG
Sbjct: 2 MMQKPITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIG--VG 59
Query: 48 NPSIGGIGKSHLVKEIDAMGGIMAI-ATDKSGIQFR 82
+ + + ID I A+ K G +F
Sbjct: 60 EGTWPSMRSTLSKIGIDENDFIRQCDASFKQGSRFI 95
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle,
structural genom structure 2 function project, S2F,
unknown function; 1.80A {Escherichia coli}
Length = 266
Score = 28.6 bits (63), Expect = 5.4
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 8 DVIVVGGGH--AGTEAALVSARMGQKTLLLS----HNIDTIGQMSCNPSIGGIGKSHLVK 61
D +++ G +AA AR Q LL+S H+ + ++
Sbjct: 38 DCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRA 97
Query: 62 EIDAMGGIMAIATDKSGI 79
E + IA I
Sbjct: 98 EATIL---ADIAHQFWHI 112
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM;
1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 28.8 bits (65), Expect = 6.1
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 2 LFKSKFDVIVVGG-GHAGTEAALVS 25
+ +++ G G EAA S
Sbjct: 54 AMRLSNKPVILHGEPVLGLEAAAAS 78
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 28.6 bits (64), Expect = 6.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 1 MLFKSKFDVIVVGG-GHAG--TEA---ALVSARMGQKTLLLS----HNI-DTIGQ 44
+L ++ I VGG G G T + A+ +++ LL+S HN+ D G
Sbjct: 13 LLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGT 67
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Length = 236
Score = 28.4 bits (64), Expect = 7.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 7 FDVIVVGGGHAGTEAALVSARM 28
DV+++ G+ G AAL
Sbjct: 81 QDVVLITSGYRGIPAALQDENF 102
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 28.6 bits (63), Expect = 7.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 4 KSKFDVIVVGGGHAG-TEAALVSARMGQKTLLL 35
++FD+ VVG G G T A V+ ++ ++ L+L
Sbjct: 5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVL 37
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 28.6 bits (64), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 7 FDVIVVGGGHAGTEAA 22
DV++VG G AG AA
Sbjct: 36 ADVVIVGAGPAGLSAA 51
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; structural DNA-binding protein
BRAF35, DNA-bending; NMR {Mus musculus}
Length = 92
Score = 27.0 bits (60), Expect = 7.3
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 426 PYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWK 465
Y F + E R +R + DL EI LG +W
Sbjct: 14 GYVRFLN--ERREQIRTRHPDLPFPEITKMLG----AEWS 47
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP
kinase, aspartokinase fold, pyrimidine nucleotide
synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus
solfataricus} PDB: 2j4k_A* 2j4l_A*
Length = 226
Score = 28.1 bits (63), Expect = 7.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 1 MLFKSKFDVIVVGGGHAG----TEAALVSARMGQKTLLLSHNID 40
+ S V+V GG G AALV+ KTL+++ N+D
Sbjct: 99 IQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVD 142
>2ij9_A Uridylate kinase; structural genomics, protein structure
initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus}
SCOP: c.73.1.3
Length = 219
Score = 28.1 bits (63), Expect = 8.0
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 5 SKFDVIVVGGGHAG----TEAALVSARMGQKTLLLSHNIDTIGQMSCNP 49
+ V+V+GG G AAL++ + + + N+D G S +P
Sbjct: 100 KLYRVVVMGGTFPGHTTDATAALLAEFIKADVFINATNVD--GVYSADP 146
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus
273-4}
Length = 379
Score = 28.2 bits (63), Expect = 8.4
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 2 LFKSKFDVIVVGGGHAGTEAALVSARMGQKTLLLSH 37
++ ++ VI+ G G G EA + + L++ +
Sbjct: 47 VYNAEAAVIIPGSGTYGMEAVARQLTIDEDCLIIRN 82
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 28.3 bits (63), Expect = 8.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
VIVVG G +G AA + G LL+
Sbjct: 2 TVGPRVIVVGAGMSGISAAKRLSEAGITDLLI 33
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 28.3 bits (64), Expect = 8.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 4 KSKFDVIVVGGGHAGTEAALVSARMGQKTLLL 35
+ D IV+G G G A A G + L+
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVA 33
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom
joint center for structural genomics, JCSG, protein
structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A
{Thermotoga maritima}
Length = 335
Score = 28.2 bits (64), Expect = 9.3
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 9 VIVVGGGHAGTEAALVSARMGQKTLLLSHN---IDTIGQMSCNPSIGGI 54
V+G G GT A + G++ +L + +D I +P +
Sbjct: 17 FFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEES 65
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group
transfer, pyrimidine biosynthesis, transferase; 2.40A
{Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A*
2bmu_A* 2bri_A*
Length = 244
Score = 27.7 bits (62), Expect = 9.6
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 9 VIVVGGGHAG----TEAALVSARMGQKTLLLSHNID 40
+ V+GG H G AAL++ + L++ N+D
Sbjct: 127 IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVD 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.394
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,736,341
Number of extensions: 612554
Number of successful extensions: 1888
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1857
Number of HSP's successfully gapped: 219
Length of query: 637
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 537
Effective length of database: 3,909,693
Effective search space: 2099505141
Effective search space used: 2099505141
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)