BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9396
         (1149 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|399017825|ref|ZP_10720014.1| DNA-directed DNA polymerase III PolC [Herbaspirillum sp. CF444]
 gi|398102592|gb|EJL92772.1| DNA-directed DNA polymerase III PolC [Herbaspirillum sp. CF444]
          Length = 1153

 Score = 1537 bits (3979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/1152 (62%), Positives = 913/1152 (79%), Gaps = 8/1152 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF+HLRLHSEYSI+DGL+RI+DV++AAA D Q ALAITDL+NLFG++KFYK A  KG+K
Sbjct: 4    PQFVHLRLHSEYSIVDGLVRIDDVVKAAAKDGQAALAITDLANLFGMVKFYKGARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVW++N+ +  KPSRLLLLVKN++GYLQLC+LLSKA++ N++ GRAEIR EWLE+
Sbjct: 64   PIAGCDVWVSNDDDRDKPSRLLLLVKNHHGYLQLCDLLSKAWLTNLHRGRAEIRPEWLEQ 123

Query: 123  NKYQDG---LIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
             ++++G   LIALSGAH GDIGIA++NG    AE  A+RWS  FP  FY+EIQR  QPNM
Sbjct: 124  LRHEEGGNGLIALSGAHFGDIGIAIENGNVAAAERCAQRWSDYFPGAFYVEIQRANQPNM 183

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
            + Q++Q + +A+ + LP+VATHPIQFL + EF+AHE RTCIAEGEIL+N +R+++F ++Q
Sbjct: 184  DIQVRQSVALAARLGLPVVATHPIQFLSQDEFIAHEARTCIAEGEILANARRVRRFNEQQ 243

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             FK+Q+EM  LF D+P A+QNTIEIAKRCNL L  GKP+LP FPTP  + I+DFL++++K
Sbjct: 244  EFKSQAEMAALFADLPGAVQNTIEIAKRCNLTLTLGKPQLPNFPTPDGMTIDDFLVAETK 303

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+ RL +L+ D    + E+ RY+ RL+FE +TIIKM F GYFLIV+DFIQWAKNN +P
Sbjct: 304  LGLEARLKHLFPDEARREKERPRYEARLKFENDTIIKMKFPGYFLIVADFIQWAKNNGVP 363

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSLSITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQY
Sbjct: 364  VGPGRGSGAGSLVAYSLSITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQY 423

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            VKDRYGK+AVSQI TFGTMAAKGA+RDVGRVLDL Y+FCD ISKLIPFKPGKL+TL++AI
Sbjct: 424  VKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLADAI 483

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            +EEP L ER++NEEEV+QL+ LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY Q G  
Sbjct: 484  EEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDA 543

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
            G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +IK+++    +F L KLPL D+ +Y
Sbjct: 544  GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKQLDPNMADFDLAKLPLTDRASY 603

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
            +LL KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC+RKHGE 
Sbjct: 604  DLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKHGEK 663

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F+YPDPRT+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM EHR 
Sbjct: 664  FDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAMGKKKAEEMAEHRN 723

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GA K GLS+ KA++IF+ +EKFAGYGFNKSHA AYALLSY+TAYLK H+ + FMAA
Sbjct: 724  IFRAGAAKDGLSQEKADDIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAFMAA 783

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
            NLSL+MDDT KIKILV+DA+  CGL +LPP+INLS Y F P+ E   K  +IRYGLGA+K
Sbjct: 784  NLSLAMDDTEKIKILVEDALDVCGLGLLPPDINLSDYRFTPVGEPGKKAMQIRYGLGAVK 843

Query: 840  GTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            G+G+S IEAI+  R+  G F +LFDF KR+DKK INRR ++SLI +GAFDCF   R +L 
Sbjct: 844  GSGQSAIEAIIAARQEGGAFKDLFDFAKRVDKKQINRRTVDSLIRAGAFDCFGVDRAILQ 903

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            AS+ +A +NAE+ +   NQ+SLF  DD ++L+  L YV V  W+ KQ L EEK  LGF L
Sbjct: 904  ASVGLAWENAEQLEASANQVSLFGGDD-SDLETPLEYVDVRPWTDKQRLTEEKTALGFYL 962

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNS 1017
            S H+F  YE E+RQF+   +S L+P+    +++GIIT ++++ T RGK+LI+ +DD S +
Sbjct: 963  SGHLFDAYEKEVRQFVRAKISSLEPSRDPRSLAGIITGIRVQMTQRGKLLIVSLDDGSGT 1022

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            V+V +  +L E NK   KE+ELLIV GKV EDRF   +RI+AEK+ DI  ARI YG++  
Sbjct: 1023 VDVTVYGELAEPNKAFFKEDELLIVQGKVSEDRFNGGLRISAEKVMDIGAARIQYGQRVV 1082

Query: 1078 VMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALI 1137
            V  ++  + + L+  L  ++   GLPFV+ Y +   +  E+    +++V P D L+ +L 
Sbjct: 1083 VSLDKAVDPAYLRDTLSSYRQAQGLPFVMKY-VQSGVGCEVMLGDSWRVVPSDGLQSSLK 1141

Query: 1138 -NLGLYNAIIEY 1148
             + G    ++EY
Sbjct: 1142 ESFGQEAVVVEY 1153


>gi|398835783|ref|ZP_10593140.1| DNA-directed DNA polymerase III PolC [Herbaspirillum sp. YR522]
 gi|398215221|gb|EJN01786.1| DNA-directed DNA polymerase III PolC [Herbaspirillum sp. YR522]
          Length = 1152

 Score = 1514 bits (3921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/1151 (60%), Positives = 909/1151 (78%), Gaps = 7/1151 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF+HLRLHSEYSI+DGL+RI+DV++AAA D Q A+A+TDL+NLFG++KFYK+A  KG+K
Sbjct: 4    PQFVHLRLHSEYSIVDGLVRIDDVVKAAAKDGQAAMAVTDLANLFGMVKFYKAARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCD+WITNE++ +KPSRLLLLVKN+ GYLQLCELLSKA++ENI  GRAE+RIEWL+ 
Sbjct: 64   PIAGCDIWITNELDREKPSRLLLLVKNHKGYLQLCELLSKAWLENIYKGRAEVRIEWLDA 123

Query: 123  NKYQDG---LIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
             ++QDG   LIALSGAH GDIG A+ NG    AE  ARRW +IFP +FY+EIQR  Q N 
Sbjct: 124  LRHQDGGNGLIALSGAHGGDIGQAIDNGNLAQAEQAARRWCEIFPASFYLEIQRCGQANG 183

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
              Q++Q + + + + LP+VATHPIQF    EF+AHE RTCIAEGEIL+N +R+++F  +Q
Sbjct: 184  ELQVRQTVALGARLGLPVVATHPIQFQSTEEFIAHEARTCIAEGEILANARRVRRFNDQQ 243

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             FK+Q+EM+ LF D+P A+ NT+EIAKRCNL LE GKP+LP FPTP  + I+DFL+++++
Sbjct: 244  YFKSQAEMLALFADLPGAVANTLEIAKRCNLVLELGKPQLPDFPTPDGMTIDDFLVAQTQ 303

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+ RLL+L+ +    + E+ RY+ RL+FE +TIIKM F GYFLIV+DFIQWAKNN +P
Sbjct: 304  AGLESRLLHLFPNEAEREKERPRYEARLKFENDTIIKMKFPGYFLIVADFIQWAKNNGVP 363

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSLSITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQY
Sbjct: 364  VGPGRGSGAGSLVAYSLSITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQY 423

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            VKDRYGK+AVSQI TFGTMAAKGA+RDVGRVLDL Y+FCD ISKLIPFKPGKL+TL++AI
Sbjct: 424  VKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLADAI 483

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            +EEP L ER+ NEEEV+QL+ LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY Q G  
Sbjct: 484  EEEPMLKERLDNEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDA 543

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
            G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+   +I++++    +F L KLPLND+ +Y
Sbjct: 544  GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAERYIRQLDPAMADFDLAKLPLNDRASY 603

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
            +LL KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC+RKHGE 
Sbjct: 604  DLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKHGEA 663

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F+YPDPRT+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM +HR+
Sbjct: 664  FDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAKHRE 723

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALLSYYTAYLK H+ + FMAA
Sbjct: 724  LFREGAGKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYYTAYLKAHHPAAFMAA 783

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
            NLSL+M+DT+K+KIL++D++  C L+ILPP+IN S Y F P+ E   K  +IRYGLGA+K
Sbjct: 784  NLSLAMEDTDKVKILIEDSLDICKLTILPPDINQSDYRFMPVGEPGKKATQIRYGLGAVK 843

Query: 840  GTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            G G++ IE+I+  RK G F +LFDF KR+DKK INRR I+SLI +GAFDCF   R +L A
Sbjct: 844  GAGQNAIESIIEARKAGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFDCFKVDRAVLQA 903

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            S+ +A ++AE+ +K  NQ+SLF  DD ++L+  L+YV V  WS KQ L EEK  LGF LS
Sbjct: 904  SVPLAWESAEQAEKSANQVSLFGGDD-SDLEAPLDYVNVLPWSDKQRLTEEKGALGFYLS 962

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
             H+F  YE E+R+F+   +S L+P+    +++GIIT ++++ T RGK++I  +DD +  +
Sbjct: 963  GHLFSAYEKEVRRFVRTKISSLEPSREPRSLAGIITGVRVQMTQRGKLVICTLDDGTGVI 1022

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            E  I ++++E  K+++KE+ELL++ G+V EDRF   +R++AEK+ D+  ARI YG +  V
Sbjct: 1023 EASIYSEVFEPIKHLIKEDELLVLQGRVSEDRFNGGLRVSAEKVMDLGAARIQYGVRMVV 1082

Query: 1079 MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALI- 1137
               +  + ++L++ L   +   GLPFV+ Y +      E+    N+++ P D L+  L+ 
Sbjct: 1083 QLKQAVDPALLRETLSAHRQDQGLPFVMRY-LRDDAGCEVMLGDNWRINPSDSLQTTLVA 1141

Query: 1138 NLGLYNAIIEY 1148
            + G    ++EY
Sbjct: 1142 SFGKEAVVVEY 1152


>gi|329908024|ref|ZP_08274797.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546808|gb|EGF31739.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1177

 Score = 1501 bits (3886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1135 (62%), Positives = 901/1135 (79%), Gaps = 3/1135 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF HLRLHSEYSI+DGL+RI+DV++AAA D QP+LAITDL+NLFG++KFYK+A  KGIK
Sbjct: 31   PQFTHLRLHSEYSIVDGLIRIDDVVDAAAADSQPSLAITDLANLFGMVKFYKAARKKGIK 90

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIGCDVWITN+ +  KPSRLLLL KN  GYLQLCEL+S+A++ N++ GRAEIR EWLEK
Sbjct: 91   PIIGCDVWITNDDDRDKPSRLLLLAKNAAGYLQLCELISQAWLSNLHRGRAEIRTEWLEK 150

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLIAL+GAH GD+GIA++NG    AE  A+RWS+IFP +FYIEIQR  QPN   Q
Sbjct: 151  LSPANGLIALAGAHFGDVGIAIENGNLPAAERNAQRWSRIFPGHFYIEIQRAGQPNQEAQ 210

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            ++Q + +A+ + LP+VATHPIQFL K EF+AHE RTCI+EGE+L+N++R+++F   Q F 
Sbjct: 211  VRQLVALAARLQLPVVATHPIQFLTKEEFIAHEARTCISEGEMLANSRRVRRFNDRQCFT 270

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM  LF D+P+A+QN+ EIAKRCNL L+ GKP+LP FPTP+ + I DFL+++++ GL
Sbjct: 271  TQAEMAGLFADLPAALQNSNEIAKRCNLTLQLGKPRLPDFPTPEGMTIGDFLVAEARSGL 330

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RLL LY D    + E+ RY  RL FE  TIIKM F GYFLIV+DFIQWAKNN +PVGP
Sbjct: 331  ERRLLQLYPDETKREAERQRYADRLDFETNTIIKMGFPGYFLIVADFIQWAKNNGVPVGP 390

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSLSITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQYVKD
Sbjct: 391  GRGSGAGSLVAYSLSITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQYVKD 450

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYGK+AVSQI TFGTMAAKGAIRDVGRVLD+ Y+FCD ISKLIPFKPGK +T+++AI EE
Sbjct: 451  RYGKEAVSQIATFGTMAAKGAIRDVGRVLDMGYNFCDGISKLIPFKPGKQVTIADAILEE 510

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P LAER +NE+EVRQL++LA+QVEGI RN+GMHAGGV+IAP KL +FCPLY Q G  G++
Sbjct: 511  PLLAERQENEDEVRQLLDLAQQVEGIARNIGMHAGGVVIAPGKLTDFCPLYTQGGDAGVV 570

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD  + +IK+++    +FSL KLPLNDK +Y+LL
Sbjct: 571  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAVRYIKRLDPAMADFSLEKLPLNDKASYDLL 630

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNY 662
             KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FCRRKHGE F+Y
Sbjct: 631  TKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCRRKHGERFDY 690

Query: 663  PDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQ 722
            PDPRT+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM EHR+ F+
Sbjct: 691  PDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAMGKKKAEEMAEHRQIFR 750

Query: 723  NGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLS 782
            +GA K GLS+ KA+EIF+ +EKFAGYGFNKSHA AYALL+Y+TAYLK H+ + FMAANLS
Sbjct: 751  DGAAKDGLSEAKADEIFDLMEKFAGYGFNKSHAAAYALLAYHTAYLKAHHPAAFMAANLS 810

Query: 783  LSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTG 842
            L+MDDT KI+ILV+D I  C +++LPP+IN S Y F P+ E   + K+IRYGLGA+KG+G
Sbjct: 811  LAMDDTEKIRILVEDVIDVCAMTLLPPDINQSDYRFTPVGEPGKRAKQIRYGLGAVKGSG 870

Query: 843  KSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASID 902
            +  IEAIV  R  G FT+LFDF KR+DK+ +NRR ++SLI +GAFDCF   R +L+AS+ 
Sbjct: 871  QGAIEAIVAARASGPFTDLFDFAKRVDKRQVNRRTVDSLIRAGAFDCFEVDRAVLLASVA 930

Query: 903  VALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            +AL+ AE+ +  INQ+SLF  DD ++L     Y+KV  W+ KQ L EEK  LGF LS H+
Sbjct: 931  LALEAAEQHEASINQVSLFGGDD-SDLDTQPEYLKVAPWTDKQRLTEEKTALGFYLSGHL 989

Query: 963  FCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNSVEVI 1021
            F  Y  E+R+F    LS L+P+     ++GII  L+++ T RGK++I+ +DD+S +V+V 
Sbjct: 990  FNSYAEEVRRFARTKLSSLEPSRDPRMIAGIIVSLRVQMTQRGKMVIVTLDDSSATVDVT 1049

Query: 1022 INNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN 1081
            + N++Y+ NK + KE+E L VSGKV EDRF   +RI AEK+ DI  ARI YGK+ ++  +
Sbjct: 1050 VYNEIYDANKRMFKEDEFLCVSGKVSEDRFSGGLRITAEKVMDIAAARIQYGKQITLAHS 1109

Query: 1082 RTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLAL 1136
               + + +K +L  ++ + GLPF+L Y      + E++    +KV P D LK AL
Sbjct: 1110 GKLDAAQIKTLLTPYRSEAGLPFLLRYT-QAGAECELRLADEWKVLPADGLKQAL 1163


>gi|152980633|ref|YP_001352224.1| DNA polymerase III subunit alpha [Janthinobacterium sp. Marseille]
 gi|151280710|gb|ABR89120.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
          Length = 1152

 Score = 1499 bits (3882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1140 (62%), Positives = 898/1140 (78%), Gaps = 5/1140 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQFIHLRLHSEYSI+DGL+RI+DVI+AAA D QPALAI+DL+NLFG++KFYK A + GIK
Sbjct: 4    PQFIHLRLHSEYSIVDGLIRIDDVIQAAAADMQPALAISDLANLFGMVKFYKEARSNGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCDVWI+N+ +  KPSRLLLLVKN +GYLQLCELLSKA++ N++ GRAEIR EWLE+
Sbjct: 64   PIVGCDVWISNDNDRDKPSRLLLLVKNKDGYLQLCELLSKAWLTNLHRGRAEIRPEWLEQ 123

Query: 123  --NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                 ++GLI LSGAH GD+GIA+ NG    AE  A+RW+++FP +FYIE+QR  QPNM+
Sbjct: 124  VAADGKNGLIVLSGAHFGDVGIAIDNGNLGAAERCAQRWAELFPGHFYIEVQRAGQPNMD 183

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              ++Q   +A+ + LP+VATHP+QFL   EF AHE RTCI+EGEIL+N +RIK+F ++Q 
Sbjct: 184  GHVRQASVLAAKLGLPLVATHPVQFLGLEEFTAHEARTCISEGEILANPRRIKRFNEQQR 243

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FKTQ+EM +LF D+P+A+QN++EIAKRCNL LE GKPKLP FPTP   +I++FL+ +++ 
Sbjct: 244  FKTQAEMAELFADMPNALQNSVEIAKRCNLVLELGKPKLPNFPTPDGSSIDEFLVKEAQR 303

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +R+ +LY DP   +  + RY+ RL+FE +TIIKM F GYFLIV+DFI+WAKNN +PV
Sbjct: 304  GLDQRMEHLYPDPAAREKHRERYQARLKFETDTIIKMGFPGYFLIVADFIKWAKNNGVPV 363

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQYV
Sbjct: 364  GPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQYV 423

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            KD+YGKDAVSQI TFGTMAAKGA+RDVGRVLD  Y+FCD ISKLIPFKPGKL+T+S+AIK
Sbjct: 424  KDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLIPFKPGKLVTISDAIK 483

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            EEP LAER++NEEEV+QL++LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY Q G  G
Sbjct: 484  EEPLLAERLENEEEVKQLLDLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDAG 543

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
            ++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +IK ++    +F+L KLPLND+ +Y 
Sbjct: 544  VVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMADFALEKLPLNDRPSYE 603

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            LL KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FCRRKHGE F
Sbjct: 604  LLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCRRKHGERF 663

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             YPDPRT+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM EHR+ 
Sbjct: 664  EYPDPRTESILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAEHREL 723

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F+ GA K  LS  KA+EIF+ +EKFAGYGFNKSHA AYALLSY+TAYLK H+ + FMAAN
Sbjct: 724  FRAGASKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAFMAAN 783

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            LSL+MDDT+KIKILV+DAI  CGLS+LPP+IN S Y F P+     K  +IRYGLGA+KG
Sbjct: 784  LSLAMDDTDKIKILVEDAIDICGLSLLPPDINQSDYRFTPVGVPGKKATQIRYGLGAVKG 843

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +GK  I+A++  RK   FT+LFDF KR+DK+ INRR I+SLI +GAFDCF+  R +L+AS
Sbjct: 844  SGKGAIDAVIEARKERPFTDLFDFAKRVDKRQINRRTIDSLIRAGAFDCFDVDRAILLAS 903

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            +  A++ AE+ +   NQ+SLF  DD ++L+    YVKV  WS KQ+L EEK  LGF LS 
Sbjct: 904  VAFAMECAEQAEAAANQVSLFGGDD-SDLETPPEYVKVSPWSDKQKLTEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
            H+F  Y  E R+F    LS L+P+    T++G+I+ L+ + T RG+I I+ +DD S +V+
Sbjct: 963  HLFNAYADEARRFARAKLSSLEPSREPRTIAGVISGLRTQMTQRGRITIVTLDDGSATVD 1022

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVM 1079
            V + N+LY+ N+++ KE+E L V+GKV EDRF   +RI AEK+ DI   RI Y     + 
Sbjct: 1023 VTVYNELYDANRHMFKEDEFLAVTGKVSEDRFSGGLRITAEKVMDIAGVRIQYANCVRLS 1082

Query: 1080 FNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
               + +I++LK  L      +G P V+ Y   K +  E+ F   +++ P D++K  LI+L
Sbjct: 1083 LPASTDINVLKATLQPAARADGSPVVIQYQNPKGVS-ELCFAEQWRINPDDNIKQKLIDL 1141


>gi|340786231|ref|YP_004751696.1| DNA polymerase III subunit alpha [Collimonas fungivorans Ter331]
 gi|340551498|gb|AEK60873.1| DNA polymerase III alpha subunit [Collimonas fungivorans Ter331]
          Length = 1213

 Score = 1499 bits (3880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/1154 (60%), Positives = 895/1154 (77%), Gaps = 10/1154 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQFIHLRLHSEYSI+DGL+RI+DV++AAA D Q AL I+DL+NLFG++KFYK+A  KGIK
Sbjct: 62   PQFIHLRLHSEYSIVDGLVRIDDVVKAAAGDKQAALGISDLANLFGMVKFYKAARGKGIK 121

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIGCDVWITN+ +  KPSRLLLLVKN  GYLQLCELLS+A++EN++ GRAEIR EWL +
Sbjct: 122  PIIGCDVWITNDDDRDKPSRLLLLVKNRRGYLQLCELLSRAWLENLHRGRAEIRAEWLAE 181

Query: 123  NKYQDG---LIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
               Q+G   LIALSGAH GDIGIA+ NG   +AE    RW+ IFPDNFY+EIQR  QPNM
Sbjct: 182  LTQQNGGNGLIALSGAHFGDIGIAIDNGNTGLAERCIERWAAIFPDNFYVEIQRADQPNM 241

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               ++Q + +A+   +P+VATHPIQFL K EF+AHE RTCIAEGE+L+N +R+++F  +Q
Sbjct: 242  EAHVRQAVALAAKFGVPVVATHPIQFLDKEEFIAHEARTCIAEGEMLANARRVRRFNDQQ 301

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
            +FKTQ+EM +LF D+P+A+QN+IEIAKRCNL L+ GKP+LP FPTP  + I DFLI +S+
Sbjct: 302  SFKTQAEMAELFADMPAALQNSIEIAKRCNLTLQLGKPQLPDFPTPDGMTIGDFLIQQSQ 361

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+ RLL+L+ D    + ++ RY+ RL+FE +TIIKM F GYFLIV++FI+WAK N +P
Sbjct: 362  EGLELRLLHLFPDQAKREQQRQRYQDRLKFETDTIIKMGFPGYFLIVAEFIRWAKQNGVP 421

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQ+
Sbjct: 422  VGPGRGSGAGSLVAYSLQITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQH 481

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            VKD YGKDAVSQI TFGTMAAKGAIRDVGRVLD  Y+FCD ISKLIPFKPGK +T+++AI
Sbjct: 482  VKDLYGKDAVSQIATFGTMAAKGAIRDVGRVLDFGYNFCDGISKLIPFKPGKHVTIADAI 541

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            +EEP LAER++NEEEV+QL+ LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY Q G  
Sbjct: 542  QEEPMLAERLENEEEVKQLLNLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDA 601

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
            G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +IK+++    +FSL KLPLND+ +Y
Sbjct: 602  GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKQLDPAMADFSLEKLPLNDRPSY 661

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             LL  A TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC+RKHGE 
Sbjct: 662  ELLTAAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKHGER 721

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F+YPDPRT+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM EHR+
Sbjct: 722  FDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAMGKKKAEEMAEHRQ 781

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F++GA K GL++ KA+EIF+ +EKFAGYGFNKSHA AYALLSY+TAYLK H+ + FMAA
Sbjct: 782  IFRDGAAKDGLTEAKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAFMAA 841

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
            NLSL+MDDT KIKILV+D++  C L++LPP+INLS Y F P  E   K   IRYGLGA+K
Sbjct: 842  NLSLAMDDTEKIKILVEDSLVVCKLTLLPPDINLSDYRFTPEGEPGKKATFIRYGLGAVK 901

Query: 840  GTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            G+G++ IEAI+  R+   F +LFDF  R+DK+ INRR I SLI +GAFDCF   R +L+A
Sbjct: 902  GSGQNAIEAIIAARQEKPFVDLFDFCLRVDKRQINRRTIESLIRAGAFDCFKVDRGILLA 961

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            S+  A++ A++     NQ+SLF  DD ++L+  + YV+   W+ KQ+L EEK  LGF LS
Sbjct: 962  SVPRAMEAADQKLASANQVSLFGGDD-SDLEAPIEYVQAAPWTDKQKLTEEKSALGFYLS 1020

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITELKLKTTYRGKILIIVIDDNSNSV 1018
             H+F  Y  E R+F    L  L+P+    V +GII+ L+ + T RGK++I+ +DD S +V
Sbjct: 1021 GHLFHAYAAEARRFARTPLGSLEPSREPRVLAGIISGLRAQMTQRGKMMIVTLDDGSATV 1080

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            +V + N+ +E NK   KE+E L+V GKV EDRF   +R++AEK+ DI  ARI YG++  +
Sbjct: 1081 DVTVYNEQFEPNKAFFKEDEFLVVHGKVSEDRFNGGLRVSAEKVMDIATARIQYGRQIVL 1140

Query: 1079 MFN---RTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLA 1135
              +   +  + + LK +L   +  NGLP  L Y     +  E+     ++V P D L+LA
Sbjct: 1141 SLSSPAQKIDATQLKDMLSSHRSGNGLPMTLRYT-GDGVACEILLGDEWRVSPSDGLQLA 1199

Query: 1136 LIN-LGLYNAIIEY 1148
            L+  +G     +EY
Sbjct: 1200 LVEKVGKEAVAVEY 1213


>gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1]
 gi|300075651|gb|ADJ65050.1| DNA polymerase III (alpha chain) protein [Herbaspirillum seropedicae
            SmR1]
          Length = 1152

 Score = 1487 bits (3849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 686/1151 (59%), Positives = 902/1151 (78%), Gaps = 7/1151 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF+HLR+HSEYSI+DGL+RI+D+++AAA D Q ALA+TDL+NLF +++FYK A  KG+K
Sbjct: 4    PQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCD+WITN+ + +KP RLL+L+KN +GYLQLCE+LS+A++ N   GRAE+R+EWL+ 
Sbjct: 64   PIAGCDLWITNDADREKPFRLLVLIKNRHGYLQLCEVLSQAWLNNQYKGRAEVRMEWLDA 123

Query: 123  NKYQDG---LIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
             ++Q+G   LIALSGA +GDIG A+ NG    AE  ARRW++IFP  FY+E+QR  Q NM
Sbjct: 124  LRHQEGGNGLIALSGAAMGDIGQAIDNGNLAQAEACARRWAEIFPGAFYLELQRAGQANM 183

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
              Q++Q + + + + LP VATHPIQF    EF+AHE RTCIAEGEI++N +R+++F ++Q
Sbjct: 184  EVQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIMANARRVRRFNEQQ 243

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             FK+Q+EM++LF D+P A+ NT+EIAKRCNL L+ GKP+LP FPTP  + I+DFL++++K
Sbjct: 244  YFKSQAEMVELFADLPGAVANTVEIAKRCNLVLQLGKPQLPDFPTPDGMTIDDFLVAQTK 303

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+ RL  L+ +    + ++ RY+ RL+FE  TIIKM F GYFLIV+DFIQWAKNN +P
Sbjct: 304  AGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPGYFLIVADFIQWAKNNGVP 363

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQY
Sbjct: 364  VGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQY 423

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            VKDRYGK+AVSQI TFGTMAAKGA+RDVGRVLDL Y+FCD ISKLIPFKPGKL+TL++AI
Sbjct: 424  VKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLADAI 483

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            +EEP L ER++NEEEV+QL+ LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY Q G +
Sbjct: 484  EEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDS 543

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
            G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +I+ ++    +F L KLPL+D+ +Y
Sbjct: 544  GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMADFDLAKLPLDDRPSY 603

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             LL KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC+RKHGE 
Sbjct: 604  ELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKHGEA 663

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F+YPDPRT+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM +HR+
Sbjct: 664  FDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAKHRE 723

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GA K GL + KA+EIF+ +EKFAGYGFNKSHA AYALLSYYTAYLK H+ + FMAA
Sbjct: 724  LFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSYYTAYLKAHHPAAFMAA 783

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
            NLSL+M+DT+K+KIL++DAI  C L+ILPP+IN S Y F P+ E   K  +IRYGLGA+K
Sbjct: 784  NLSLAMEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMPVGEPGKKATQIRYGLGAVK 843

Query: 840  GTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            G G++ IEAI+  RK G F +LFDF KR+DKK INRR I+SLI +GAFDCF   R +L A
Sbjct: 844  GAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFDCFKVDRAVLQA 903

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            S+++A ++AE+ +K  NQ+SLF  DD ++L+  L YV+VP WS KQ L EEK  LGF LS
Sbjct: 904  SVNLAWESAEQAEKSANQVSLFGGDD-SDLEAPLEYVQVPPWSDKQRLTEEKGALGFYLS 962

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
             H+F  YE E+R+F+   ++ L+P++   +++GIIT ++++ T RGK++I  +DD +  +
Sbjct: 963  GHLFSAYEKEVRRFVRTKIASLEPSWEPRSLAGIITGVRVQMTQRGKLVICTLDDGTGVI 1022

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            E  I N+L+E  K+++KE+ELL+VSGKV EDRF   +R+ A+K+ D+  ARI YG +  V
Sbjct: 1023 EATIYNELFEPFKHLIKEDELLVVSGKVSEDRFNGGLRVAADKVMDLGAARIQYGVRMVV 1082

Query: 1079 MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALI- 1137
              N+  + + L+  L   + + GLPFV+ Y        E+     +++ P D L+  L+ 
Sbjct: 1083 SINKAIDPNHLRDTLSAHRQEQGLPFVMRYQ-QADAACEVVLGDAWRINPSDSLQSTLVA 1141

Query: 1138 NLGLYNAIIEY 1148
            + G    ++EY
Sbjct: 1142 SFGKEAVVVEY 1152


>gi|134093726|ref|YP_001098801.1| DNA polymerase III subunit alpha [Herminiimonas arsenicoxydans]
 gi|133737629|emb|CAL60672.1| DNA polymerase III, alpha subunit [Herminiimonas arsenicoxydans]
          Length = 1153

 Score = 1486 bits (3848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/1141 (61%), Positives = 897/1141 (78%), Gaps = 6/1141 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQFIHLRLHSEYSI+DGL+RI+DVI AAA D QP+LAITDL+NLFG++KFYK A +KGIK
Sbjct: 4    PQFIHLRLHSEYSIVDGLVRIDDVIAAAAADAQPSLAITDLANLFGMVKFYKEARSKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCDVWI+N+ +  KPSRLLLLVKN  GYLQLCELLSKA++ N++ GRAEIR EWLE+
Sbjct: 64   PIVGCDVWISNDNDRDKPSRLLLLVKNKTGYLQLCELLSKAWLTNLHRGRAEIRPEWLEQ 123

Query: 123  NKYQ---DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
               +   +GLI LSGAH GDIG+A+ NG    AE  A+RW+ +FP +FYIE+QR +QPNM
Sbjct: 124  LAAEGKPNGLIVLSGAHFGDIGMAIDNGNLAAAERHAKRWADMFPGHFYIEVQRAEQPNM 183

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
            +  ++Q   +A+ +NLP+VATHP+QFL + EF AHE RTCI+EGEIL+N +RIK+F + Q
Sbjct: 184  DAHVRQASVLAAKLNLPLVATHPVQFLDQNEFTAHEARTCISEGEILANPRRIKRFNERQ 243

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F TQ+EM +LF D+P+A+QN++EIAKRCNL LE GKPKLP FPTP   +I++FL+ +++
Sbjct: 244  RFTTQAEMAELFADMPNALQNSVEIAKRCNLMLELGKPKLPNFPTPDGSSIDEFLVKEAQ 303

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+ RL +LY DPE  +  + RY+ RL+FE +TII M F GYFLIV+DFI+WAKNN +P
Sbjct: 304  RGLEGRLQHLYPDPEQREKNRERYQARLKFETDTIIHMGFPGYFLIVADFIKWAKNNGVP 363

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQY
Sbjct: 364  VGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQY 423

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            VKD+YGKDAVSQI TFGTMAAKGA+RDVGRVLD  Y+FCD ISKLIPFKPGKL+T+++AI
Sbjct: 424  VKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLIPFKPGKLVTIADAI 483

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            KEEP LAER++NEEEV+QL+ELA++VEGI RN+GMHAGGVLIAP KL +FCPLY Q G +
Sbjct: 484  KEEPLLAERLENEEEVKQLLELAQKVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDS 543

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
            G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +IK ++    +FSL KLPLND+ +Y
Sbjct: 544  GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMADFSLEKLPLNDRPSY 603

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
            +LL KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FCRRKHGE 
Sbjct: 604  DLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCRRKHGER 663

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F YPDPRT+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM +HR+
Sbjct: 664  FEYPDPRTEAILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAQHRE 723

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GA K  LS  KA+EIF+ +EKFAGYGFNKSHA AYALLSY+TAYLK H+ + FMAA
Sbjct: 724  LFRAGAAKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAFMAA 783

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
            NLSL+MDDT+KIKILV+D +  CGL++LPP+IN S Y F P+     K  +IRYGLGA+K
Sbjct: 784  NLSLAMDDTDKIKILVEDTLDVCGLTLLPPDINQSDYRFTPVGVPGKKATQIRYGLGAVK 843

Query: 840  GTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            G+GK  I+AIV  R+   F +LFDF KR+DK+ INRR I+SLI +GAFDCFN  R +L+A
Sbjct: 844  GSGKGAIDAIVNARQGKPFVDLFDFCKRVDKRQINRRTIDSLIRAGAFDCFNIDRAVLLA 903

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            S+  A++ AE+ +   NQ+SLF  DD ++++    YVK   WS KQ+L EEK  LGF LS
Sbjct: 904  SVGFAMECAEQAEASANQVSLFGGDD-SDMETPPEYVKASPWSDKQKLTEEKAALGFYLS 962

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
             H+F  Y  E+R+F    LS L+P+    T++G+I+ ++ + T RG+++I+ +DD S +V
Sbjct: 963  GHLFDAYAEEVRRFARTKLSNLEPSREPRTIAGVISGVRTQMTQRGRMIIVTLDDGSATV 1022

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            +V + N++++ N+N+ KE+E L VSGK+ EDRF   +RI AEK+ DI   RI Y K   +
Sbjct: 1023 DVTVYNEVFDANRNLFKEDEFLAVSGKISEDRFSGGLRITAEKVMDIAAVRIQYAKCIYL 1082

Query: 1079 MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN 1138
                + +++ L   L      +G P V+ Y   K +  E++F   +++ P D+ K  LI+
Sbjct: 1083 SLQASADVNTLMATLQAAARADGSPVVIQYQNQKGVS-ELRFAEQWRINPDDNTKQKLID 1141

Query: 1139 L 1139
            L
Sbjct: 1142 L 1142


>gi|415911120|ref|ZP_11553363.1| DNA polymerase III, alpha subunit [Herbaspirillum frisingense GSF30]
 gi|407762316|gb|EKF71189.1| DNA polymerase III, alpha subunit [Herbaspirillum frisingense GSF30]
          Length = 1142

 Score = 1480 bits (3832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/1144 (60%), Positives = 896/1144 (78%), Gaps = 7/1144 (0%)

Query: 10   LHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDV 69
            +HSEYSI+DGL+RI+D+++AAA D Q ALA+TDLSNLF +++FYK A  KG+KPI GCD+
Sbjct: 1    MHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLSNLFCMVRFYKEARGKGVKPIAGCDL 60

Query: 70   WITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDG- 128
            WITN+ +  KP RLL+L+K+ +GYLQLCE+LS+A++ N   GRAE+R+EWLE  ++Q+G 
Sbjct: 61   WITNDADRDKPFRLLVLIKSRHGYLQLCEVLSQAWLNNQYKGRAEVRMEWLEALRHQEGG 120

Query: 129  --LIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQF 186
              LIALSGA LGDIG A+ NG    AE  ARRW+ IFP  FY+E+QR  QPNM+ Q++Q 
Sbjct: 121  NGLIALSGAGLGDIGQAIDNGNLAQAEACARRWADIFPGAFYLELQRAGQPNMDVQVRQS 180

Query: 187  INIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSE 246
            + + + + LP VATHP+QF    EF+AHE RTCIAEGEI++N +R+K+F ++Q FK+Q+E
Sbjct: 181  VALGARLGLPCVATHPVQFQSPEEFIAHEARTCIAEGEIMANARRVKRFNEQQYFKSQAE 240

Query: 247  MIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRL 306
            M +LF D+P AI NT+EIAKRCNL L+ GKP+LP FPTP  + I+DFL++++K GL+ RL
Sbjct: 241  MAELFADLPGAIANTVEIAKRCNLVLQLGKPQLPDFPTPDGMTIDDFLVAQTKAGLEVRL 300

Query: 307  LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGS 366
              L+ +    + E+ RY+ RL+FE  TIIKM F GYFLIV+DFIQWAKNN +PVGPGRGS
Sbjct: 301  KELFPNEAEREKERARYEARLEFENNTIIKMKFPGYFLIVADFIQWAKNNGVPVGPGRGS 360

Query: 367  GASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGK 426
            GA SLVAY L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQYVKDRYGK
Sbjct: 361  GAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQYVKDRYGK 420

Query: 427  DAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLA 486
            +AVSQI TFGTMAAKGA+RDVGRVLDL Y+FCD ISKLIPFKPGKL+TL++AI+EEP L 
Sbjct: 421  EAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLADAIEEEPLLK 480

Query: 487  ERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYD 546
            ER++NEEEV+QL+ LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY Q G +G++SQYD
Sbjct: 481  ERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDSGVVSQYD 540

Query: 547  KDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKAN 606
            KDD+E +GL+KFDFLGLTTL+ILD+ + +I+ ++     F L KLPL+D+ +Y LL KA 
Sbjct: 541  KDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMAEFDLAKLPLDDRPSYELLTKAK 600

Query: 607  TVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPR 666
            TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC+RKHGE F+YPDPR
Sbjct: 601  TVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKHGEAFDYPDPR 660

Query: 667  TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAI 726
            TKD+LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM +HR+ F+ GA 
Sbjct: 661  TKDILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAKHRELFREGAA 720

Query: 727  KYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMD 786
            K GL + KA+EIF+ +EKFAGYGFNKSHA AYALLSYYTAYLK H+ + FMAANLSL+M+
Sbjct: 721  KNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSYYTAYLKAHHPAAFMAANLSLAME 780

Query: 787  DTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTI 846
            DT+K+KIL++DAI  C L+ILPP+IN S Y F P+ E   K  +IRYGLGA+KG G++ I
Sbjct: 781  DTDKVKILIEDAIDICKLAILPPDINKSDYRFMPVGEPGKKATQIRYGLGAVKGAGQNAI 840

Query: 847  EAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALK 906
            EAI+  RK G F +LFDF KR+DKK INRR I+SLI +GAFDCF   R +L AS+++A +
Sbjct: 841  EAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFDCFKVDRAILQASVNLAWE 900

Query: 907  NAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIY 966
            +AE+ +K  NQ+SLF  DD ++L+  L YV+VP WS KQ L EEK  LGF LS H+F  Y
Sbjct: 901  SAEQAEKSANQVSLFGGDD-SDLEAPLEYVQVPPWSDKQRLTEEKGALGFYLSGHLFSAY 959

Query: 967  ETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ 1025
            E E+R+F+   ++ L+P++   +++GIIT ++++ T RGK++I  +DD +  +E  I N+
Sbjct: 960  EKEVRRFVRTKIASLEPSWEPRSLAGIITGVRVQMTQRGKLVICTLDDGTGVIEATIYNE 1019

Query: 1026 LYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFN 1085
            L+E  K+++KE+ELL+VSGKV EDRF   +R+ A+K+ D+  ARI YG +  V  N+  +
Sbjct: 1020 LFEPFKHLIKEDELLVVSGKVSEDRFNGGLRVAADKVMDLGAARIQYGVRMVVSLNKAVD 1079

Query: 1086 ISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALI-NLGLYNA 1144
             + L+  L   + + GLPFV+ Y  + +   E+     ++V P D L+  L+ + G    
Sbjct: 1080 PNQLRDTLSAHRQEQGLPFVMRYQQSDA-ACEVVLGDAWRVNPSDSLQSTLVASFGKEAV 1138

Query: 1145 IIEY 1148
            ++EY
Sbjct: 1139 VVEY 1142


>gi|409407321|ref|ZP_11255772.1| DNA polymerase III subunit alpha [Herbaspirillum sp. GW103]
 gi|386433072|gb|EIJ45898.1| DNA polymerase III subunit alpha [Herbaspirillum sp. GW103]
          Length = 1142

 Score = 1478 bits (3827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1144 (59%), Positives = 895/1144 (78%), Gaps = 7/1144 (0%)

Query: 10   LHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDV 69
            +HSEYSI+DGL+RI+D+++AAA D Q ALA+TDL+NLF +++FYK A  KG+KPI GCD+
Sbjct: 1    MHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGKGVKPIAGCDL 60

Query: 70   WITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDG- 128
            WITN+ + +KP RLL+L+K+ +GYLQLCE+LS+A++ N   GRAE+R+EWL+  ++QDG 
Sbjct: 61   WITNDADREKPFRLLVLIKSRHGYLQLCEVLSQAWLNNQYKGRAEVRMEWLDALRHQDGG 120

Query: 129  --LIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQF 186
              LIALSGA +GDIG A+ NG    AE  ARRW++IFP  FY+E+QR  Q NM  Q++Q 
Sbjct: 121  NGLIALSGAGMGDIGQAIDNGNLAQAEACARRWAEIFPGAFYLELQRAGQANMELQVRQS 180

Query: 187  INIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSE 246
            + + + + LP VATHPIQF    EF+AHE RTCIAEGEI++N +R+K+F ++Q FK+Q+E
Sbjct: 181  VALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIMANARRVKRFNEQQYFKSQAE 240

Query: 247  MIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRL 306
            M +LF D+P AI NT+EIAKRCNL L+ GKP+LP FPTP  ++I+DFL++++K GL+ RL
Sbjct: 241  MAELFADLPGAIANTVEIAKRCNLVLQLGKPQLPDFPTPDGMSIDDFLVAQTKAGLEVRL 300

Query: 307  LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGS 366
              L+ D    + ++ RY+ RL+FE  TIIKM F GYFLIV+DFIQWAKNN +PVGPGRGS
Sbjct: 301  KELFPDEAEREKQRPRYEARLEFENSTIIKMKFPGYFLIVADFIQWAKNNGVPVGPGRGS 360

Query: 367  GASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGK 426
            GA SLVAY L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQYVKDRYGK
Sbjct: 361  GAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQYVKDRYGK 420

Query: 427  DAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLA 486
            DAVSQI TFGTMAAKGA+RDVGRVLDL Y+FCD ISKLIPFKPGKL+TL++AI+EEP L 
Sbjct: 421  DAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLADAIEEEPLLK 480

Query: 487  ERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYD 546
            ER++NEEEV+QL+ LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY Q G +G++SQYD
Sbjct: 481  ERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDSGVVSQYD 540

Query: 547  KDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKAN 606
            KDD+E +GL+KFDFLGLTTL+ILD+ + +I+ ++    +F L KLPL+D+ +Y LL KA 
Sbjct: 541  KDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMADFDLAKLPLDDRPSYELLTKAK 600

Query: 607  TVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPR 666
            TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC+RKHGE F+YPDPR
Sbjct: 601  TVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKHGEAFDYPDPR 660

Query: 667  TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAI 726
            T+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM +HR+ F+ GA 
Sbjct: 661  TEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAKHRELFREGAA 720

Query: 727  KYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMD 786
            K GL + KA+EIF+ +EKFAGYGFNKSHA AYALLSYYTAYLK H+ + FMAANLSL+M+
Sbjct: 721  KNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSYYTAYLKAHHPAAFMAANLSLAME 780

Query: 787  DTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTI 846
            DT+K+KIL++DAI  C L+ILPP+IN S Y F P+ E   K  +IRYGLGA+KG G++ I
Sbjct: 781  DTDKVKILIEDAIDICKLAILPPDINKSDYRFMPVGEPGKKATQIRYGLGAVKGAGQNAI 840

Query: 847  EAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALK 906
            EAI+  RK G F +LFDF KR+DKK INRR I+SLI +GAFDCF   R +L AS+++A +
Sbjct: 841  EAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFDCFKVDRAILQASVNLAWE 900

Query: 907  NAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIY 966
            +AE+ +K  NQ+SLF  DD ++L+  L YV+VP WS KQ L EEK  LGF LS H+F  Y
Sbjct: 901  SAEQAEKSANQVSLFGGDD-SDLEAPLEYVQVPPWSDKQRLTEEKGALGFYLSGHLFSAY 959

Query: 967  ETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ 1025
            E E+R+F+   ++ L+P++   +++GIIT ++++ T RGK++I  +DD +  +E  I N+
Sbjct: 960  EKEVRRFVRTKIASLEPSWEPRSLAGIITGVRVQMTQRGKLVICTLDDGTGVIEATIYNE 1019

Query: 1026 LYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFN 1085
            L+E  K+++KE+ELL+VSGKV EDRF   +R+ A+K+ D+  ARI YG +  V  N+  +
Sbjct: 1020 LFEPFKHLIKEDELLVVSGKVSEDRFNGGLRVAADKVMDLGAARIQYGVRMVVSLNKAID 1079

Query: 1086 ISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALI-NLGLYNA 1144
             + L+  L   + + GLPFV+ Y        E+     ++V P D L+  L+ + G    
Sbjct: 1080 PNHLRDTLAAHRQEQGLPFVMRY-RQADAACEVVLGDAWRVNPSDSLQSTLVASFGKEAV 1138

Query: 1145 IIEY 1148
            ++EY
Sbjct: 1139 VVEY 1142


>gi|395763786|ref|ZP_10444455.1| DNA polymerase III subunit alpha [Janthinobacterium lividum PAMC
            25724]
          Length = 1179

 Score = 1472 bits (3810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1164 (59%), Positives = 889/1164 (76%), Gaps = 20/1164 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSEYSI+DGL+RI+DV++AAA D Q ALA+TDLSNLFG++KFYK A  KGIK
Sbjct: 18   PAFVHLRVHSEYSIVDGLVRIDDVVKAAAKDKQVALAVTDLSNLFGMVKFYKEARGKGIK 77

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G DVWITN+   +KPSRLLLL KN  GYLQLCELLS A++ N   GRAE+RIEWL+ 
Sbjct: 78   PIVGVDVWITNDDNREKPSRLLLLAKNRMGYLQLCELLSMAWLSNQYKGRAELRIEWLQA 137

Query: 123  ---NKYQ--------DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEI 171
               N Y+        +GLI LSGAH GD+GIA++NG   +AE  A+RW+ IFP +FY+EI
Sbjct: 138  LATNTYELYPDDSAANGLIVLSGAHFGDVGIAIENGNLALAERNAQRWADIFPGHFYVEI 197

Query: 172  QRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKR 231
            QR  Q N   Q++  + +A+ + LP+VATHP+QF+   EF+AHE RTCIAEGE+L+N KR
Sbjct: 198  QRGGQANQEAQVRHAVALAAKLGLPVVATHPVQFISPEEFVAHEARTCIAEGEMLANAKR 257

Query: 232  IKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININ 291
            +K+F   Q F +Q++M +LF D+P+A+ N++EIAKRCNL L  GKP+LP FPTP  + I+
Sbjct: 258  VKRFNDSQRFLSQADMAQLFADLPAALANSVEIAKRCNLTLTLGKPQLPNFPTPPGMTID 317

Query: 292  DFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQ 351
             FL+++S+ GL+KRL+ LY DP+  + E+ RY+ RL+FE +TI  M F GYFLIV++FIQ
Sbjct: 318  QFLVAESQAGLEKRLIQLYPDPQRREQERARYESRLKFETDTICNMKFPGYFLIVAEFIQ 377

Query: 352  WAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPE 411
            WAK N +PVGPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC E
Sbjct: 378  WAKENGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQE 437

Query: 412  GRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGK 471
            GRDRVIQ+VKD YGK+AVSQI TFGTMAAKGAIRDVGRV+D  Y+FCD ISKLIPFKPGK
Sbjct: 438  GRDRVIQHVKDLYGKEAVSQIATFGTMAAKGAIRDVGRVMDFGYNFCDGISKLIPFKPGK 497

Query: 472  LITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
             +++++AI+EEP L ER++NEEEV+QL+ELA+QVEGI RN+GMHAGGVLIAP KL +FCP
Sbjct: 498  PVSIADAIEEEPLLKERLENEEEVKQLLELAQQVEGITRNIGMHAGGVLIAPGKLTDFCP 557

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY Q G +G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +IK+++    +F L  L
Sbjct: 558  LYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKQLDPAQADFDLATL 617

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PLNDK +Y+LL KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +F
Sbjct: 618  PLNDKPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDF 677

Query: 652  CRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
            C+RKHGE F+YPDPRT+ +LSETYGIMVYQEQVMQ+AQI+GGYSLG AD+LRRA+GKKK 
Sbjct: 678  CKRKHGERFDYPDPRTESILSETYGIMVYQEQVMQMAQIVGGYSLGGADMLRRAMGKKKA 737

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM EHR+ F+ GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALLSY+TAYLK H
Sbjct: 738  EEMAEHREIFRAGAAKDGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAH 797

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE----SDGK 827
            +++ FMAANLSL+MDDT+KIKILV+D+++ C L++LPP+IN S Y F P  E    S  K
Sbjct: 798  HTAAFMAANLSLAMDDTDKIKILVEDSLEICKLTLLPPDINESDYRFTPSGEAPSVSGKK 857

Query: 828  HKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGA 886
              +IRYGLGA+KG+G++ IEAI+  R  G  FT+LFDF  R+DKK INRR I SLI SGA
Sbjct: 858  VTQIRYGLGAVKGSGQNAIEAIIAARTAGGPFTSLFDFCMRVDKKQINRRTIESLIRSGA 917

Query: 887  FDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
            FDC    R +L+AS+  A++ A++  K  NQ+SLF  DD++ +    +YVKVP WS KQ 
Sbjct: 918  FDCLKVDRAILLASVAFAMECADQAAKAANQVSLFGGDDSDMVAPP-DYVKVPVWSDKQR 976

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGK 1005
            L EEK  LGF LS H+F  Y  E R+F    LSEL P+     ++GIIT L+ + T RGK
Sbjct: 977  LTEEKIALGFYLSGHLFDSYAPEARRFARTKLSELSPSREPRMMAGIITGLRTQMTQRGK 1036

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            ILI+ +DD S +VEV +  +L++ N+ I KE+E L V GKV EDRF   +RI AE  FDI
Sbjct: 1037 ILIVTLDDKSGTVEVTVYGELFDANRKIFKEDEFLAVVGKVSEDRFSGGLRITAESAFDI 1096

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYK 1125
              AR+ YG++  ++   T +   ++ ++L  + + GLP        + I   ++F   +K
Sbjct: 1097 IAARVQYGRQLGLVLPATLDAKRIRDVILPHRAETGLPIAARVS-PQGISCVLQFGDEWK 1155

Query: 1126 VQPIDDLKLALIN-LGLYNAIIEY 1148
            V P D+L++AL   LG     +EY
Sbjct: 1156 VAPSDELQMALEQMLGAQEVAVEY 1179


>gi|237747737|ref|ZP_04578217.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13]
 gi|229379099|gb|EEO29190.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13]
          Length = 1153

 Score = 1412 bits (3656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1136 (59%), Positives = 878/1136 (77%), Gaps = 11/1136 (0%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLRLHSEYSI+DGL+RI DVI AAA D QPA+A+TDL+NLFG+IKFYK+A  KG+KP
Sbjct: 5    RFVHLRLHSEYSIVDGLVRIEDVIAAAAKDGQPAMALTDLANLFGLIKFYKAARKKGVKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK- 122
            I GCDVWITN+ + +KPSRLLLLVK+  GYL LCELLS++++EN   GRAEIRIEWLE+ 
Sbjct: 65   IGGCDVWITNDADREKPSRLLLLVKDRTGYLNLCELLSRSWLENQWRGRAEIRIEWLEEL 124

Query: 123  -NKYQD-GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
              K  D GLIALSGA  GDIG+A +    D AE  ARRW+ IFPDNFYIEIQR     M 
Sbjct: 125  SKKTGDMGLIALSGAKQGDIGMAFEASGFDNAEKCARRWASIFPDNFYIEIQRTGHSGME 184

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              ++  + +A  + LP+VATHP+QFL + EF AHE RTCI+EGEILSN +R   F + Q 
Sbjct: 185  QYLRHAVELADKLQLPVVATHPVQFLSQEEFAAHEARTCISEGEILSNKRRAHNFNERQY 244

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F TQ EM +LF D+P AIQN++EIA+RCNL LE G  KLP+FPTP  + +++FL S++KH
Sbjct: 245  FYTQEEMAELFADLPGAIQNSVEIARRCNLVLELGHHKLPEFPTPDGMTLDEFLTSEAKH 304

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL+KRL  L+ D E  K ++ RY +RL +EI TII M FSGYFLIV+DFI+WAKNN +PV
Sbjct: 305  GLEKRLEELFPDEEERKTQRPRYDERLDYEIGTIINMGFSGYFLIVADFIRWAKNNGVPV 364

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL IT++DPL+YNL+FERFLNP R+SMPDFD+DFC  GRD+VIQYV
Sbjct: 365  GPGRGSGAGSLVAYSLLITNLDPLAYNLIFERFLNPERVSMPDFDVDFCQHGRDKVIQYV 424

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            KDRYGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+FCD ISKLIPFKPGK +T++ A K
Sbjct: 425  KDRYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKLIPFKPGKQVTIAEAKK 484

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            EEP LAER ++EEEV+QL+ LA+QVEGI RNVGMHAGGVLIAP KL +FCPLY Q G  G
Sbjct: 485  EEPLLAEREESEEEVKQLLALAEQVEGITRNVGMHAGGVLIAPGKLTDFCPLYTQGGEAG 544

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
            ++S +DK D+E +GL+KFDFLGLTTL+ILD  + +I++++ +  NF+L+ +PL+DK TY+
Sbjct: 545  VVSHFDKSDVEAVGLVKFDFLGLTTLTILDLAVKYIRQLDPEMANFNLDTIPLDDKATYD 604

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            LL KA TVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FCRRKHGE F
Sbjct: 605  LLIKAKTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPDFCRRKHGEKF 664

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             YPD RTK +LSETYGIMVYQEQVMQ+AQ++GGY+LG ADLLRRA+GKK  +EM  HR+ 
Sbjct: 665  EYPDERTKGILSETYGIMVYQEQVMQMAQVIGGYTLGGADLLRRAMGKKDANEMARHRQI 724

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F++GA K  L++ KA+EIF+ +EKFAGYGFNKSHA AYALLSY TA+LK H+++ FMAAN
Sbjct: 725  FRDGAAKNDLTEAKADEIFDLMEKFAGYGFNKSHAAAYALLSYQTAFLKQHHAAAFMAAN 784

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYGLG 836
            +SL+MDDT+K+K+LV+DA++ CGL+ILPP+IN S+YYF P+ E+    KK    IRYGLG
Sbjct: 785  MSLAMDDTDKVKVLVEDAVEVCGLTILPPDINHSEYYFTPVGEAPSVSKKPVSAIRYGLG 844

Query: 837  AIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            A+KG+G+S IEAIV  RK   FT+LFDF  R+DK  INRR I SLI +GAFDCFN  R +
Sbjct: 845  AVKGSGESAIEAIVKARKERPFTDLFDFCMRVDKHQINRRTIESLIRAGAFDCFNVDRAV 904

Query: 897  LVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGF 956
            L+AS+D+A++ AE+ +   NQ+SLF  ++   +   + YV+VP W++K +L EEK VLGF
Sbjct: 905  LLASVDLAIEAAEQAEASANQVSLFGEEE--AVINTVEYVQVPHWTEKHKLTEEKGVLGF 962

Query: 957  CLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNS 1015
            CLS H+F  Y  E RQF    + EL+P+     V+G+I+  + + T RGK++I+ +DD S
Sbjct: 963  CLSGHLFNAYAAEARQFAKTRIIELEPSRDPKWVAGVISGNRTQMTQRGKMMIVTLDDGS 1022

Query: 1016 NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKK 1075
             ++EV I ++L ++ + I KE+E L V GKV EDRF   +R+NA+   DI+ +R+ +G+ 
Sbjct: 1023 GTIEVTIFSELMDQKRPIFKEDEFLAVFGKVSEDRFSGGLRLNADDALDISGSRLHFGQH 1082

Query: 1076 FSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDD 1131
             S      FN++ LK+ +  ++ ++G+  +  Y ++ + K  + F  N  + P D+
Sbjct: 1083 ISFTLPEKFNLAKLKETITPWQTEDGMQLIADYIVDGN-KCRIDFGANCLLGPNDE 1137


>gi|237745551|ref|ZP_04576031.1| DNA polymerase III [Oxalobacter formigenes HOxBLS]
 gi|229376902|gb|EEO26993.1| DNA polymerase III [Oxalobacter formigenes HOxBLS]
          Length = 1153

 Score = 1412 bits (3655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/1137 (59%), Positives = 871/1137 (76%), Gaps = 15/1137 (1%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLHSEYSI+DGL+RI+DV+ AAA D QPALA+TDLSNLFG+IKFYK+A  KG+KPI
Sbjct: 6    FVHLRLHSEYSIVDGLVRIDDVVGAAAKDGQPALALTDLSNLFGLIKFYKAARKKGVKPI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             GCDVWITN+++ +KPSRLLLLVK+  GYL LCELLS+A++EN   GRAEIRIEWLE+  
Sbjct: 66   AGCDVWITNDVDREKPSRLLLLVKDRRGYLNLCELLSRAWLENQYRGRAEIRIEWLEELA 125

Query: 125  YQD---GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
             +D   GLIALSGA  GDIG+A+ +   + A+  A RW+ IFP NFYIEIQR  Q  M  
Sbjct: 126  RRDSETGLIALSGAKQGDIGMALDSTGFENAKKCALRWAGIFPGNFYIEIQRTGQLGMEQ 185

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             ++Q   +A  + LP+VATHP+QFL   +F AHE RTCI+EGE+LSN KR + F + Q F
Sbjct: 186  YVRQAAELAEKLQLPVVATHPVQFLSPDQFRAHEARTCISEGEVLSNKKRARLFNEHQCF 245

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
             +Q+EM +LF D+P A+QN +EIA+RCNL LE G  KLP FPTP  + +++FL S+++HG
Sbjct: 246  LSQTEMAQLFADLPGALQNAVEIARRCNLVLELGHHKLPLFPTPDGMTLDEFLESEARHG 305

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L+KRL  L+ D E  K  +  Y +RL +EI+TII M FSGYFLIV+DFI+WAKNN +PVG
Sbjct: 306  LEKRLEVLFPDEEERKARRPVYDERLNYEIQTIINMGFSGYFLIVADFIRWAKNNGVPVG 365

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAYSL IT++DP++YNL+FERFLNP R+SMPDFDIDFC  GRDRVIQYVK
Sbjct: 366  PGRGSGAGSLVAYSLLITNLDPIAYNLIFERFLNPERVSMPDFDIDFCQHGRDRVIQYVK 425

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            +RYGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+FCD ISKLIPFKPGK +T+++A KE
Sbjct: 426  ERYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKLIPFKPGKQVTIADAKKE 485

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EP LAER ++EEEV+QL+ LA+QVEGI RNVGMHAGGVLIAP KL +FCPLY Q+G +G+
Sbjct: 486  EPLLAEREQSEEEVKQLLGLAEQVEGITRNVGMHAGGVLIAPGKLTDFCPLYTQDGESGV 545

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DK D+EEIGL+KFDFLGLTTL+ILD  + +I +++   + F L+ +PLNDK+T++L
Sbjct: 546  VSQFDKKDVEEIGLVKFDFLGLTTLTILDLAVKYIHQLDPAMSGFELDTIPLNDKETFDL 605

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFN 661
            L +A TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FCRRKHGE F 
Sbjct: 606  LTRAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCRRKHGEAFE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPD R KD+LSETYGIM+YQEQVMQ+AQ++GGY+LG ADLLRRA+GKK  +EM  HR+ F
Sbjct: 666  YPDERAKDILSETYGIMIYQEQVMQMAQVIGGYTLGGADLLRRAMGKKDAAEMARHRQIF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            ++GA K  L + KA+EIF+ +EKFAGYGFNKSHATAYALLSY TAYLK H+++ FMAAN+
Sbjct: 726  RDGAAKNNLPEAKADEIFDLMEKFAGYGFNKSHATAYALLSYQTAYLKKHHAAAFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYGLGA 837
            SL+MDDT+K+++LV+DA+  CGL ILPP+IN S +YF P+ E     KK    IRYGLGA
Sbjct: 786  SLAMDDTDKVRVLVEDAVDVCGLEILPPDINSSDFYFKPVGEPPSVSKKPVTQIRYGLGA 845

Query: 838  IKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYML 897
            +KG+G+S IEAIV  RK   F +LFDF  R+DK+ INRR I SLI +GAFDCF E R +L
Sbjct: 846  VKGSGESAIEAIVQARKERPFRDLFDFCVRVDKRQINRRTIESLIRAGAFDCFKEDRAVL 905

Query: 898  VASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFC 957
            +AS+ +A++ AE+ +   NQ+SLF  +D   +   + YV+VP W++K  L EEK VLGFC
Sbjct: 906  LASVGLAIEAAEQAEASANQVSLFGEED--TVLNAVEYVRVPHWTEKSRLTEEKGVLGFC 963

Query: 958  LSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSN 1016
            LS H+F  Y  E RQF    +SEL+ +     V+GI+   + + + RGK++++ +DD S 
Sbjct: 964  LSGHLFHAYAGEARQFAKSRISELEASREPRWVAGIVAGTRAQMSQRGKMMVVSLDDGSA 1023

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
            ++EV + ++L E+ + I +E+E L V GKV EDRF   +R+NA+   DI   R+ +G+  
Sbjct: 1024 TIEVTVFSELLEQKRAIFREDEFLAVFGKVSEDRFSGGLRLNADDALDITEVRLHFGRHM 1083

Query: 1077 SVMFNRTFNISILKKILLRFKCKNGLPFVLYY--CINKSIKYEMKFPLNYKVQPIDD 1131
            +      F++S LK+IL  +   NG+     Y  C N+ +   + F  N+++ P D+
Sbjct: 1084 AFDLPERFSVSALKEILSAYVDGNGMHLRTDYVSCGNRCL---IDFGTNWRILPKDE 1137


>gi|445499072|ref|ZP_21465927.1| DNA polymerase III subunit alpha [Janthinobacterium sp. HH01]
 gi|444789067|gb|ELX10615.1| DNA polymerase III subunit alpha [Janthinobacterium sp. HH01]
          Length = 1181

 Score = 1407 bits (3642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1166 (57%), Positives = 879/1166 (75%), Gaps = 29/1166 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSEYSI+DGL+RI+D++  AA D Q ALA+TDLSN+FG++KFYK+A  KGIKP+
Sbjct: 23   FVHLRVHSEYSIVDGLVRIDDLVGTAAKDKQAALAVTDLSNMFGMVKFYKAARGKGIKPV 82

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G DVWITN+   +KP RL+L  KN+ GYLQLCELLS+A++ N   GRAEIR EWL +  
Sbjct: 83   VGVDVWITNDDNREKPHRLMLFAKNHMGYLQLCELLSQAWLTNQYKGRAEIRTEWLAELT 142

Query: 125  YQ-----------DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQR 173
             +           +GLI LSGAH GD+G+A++NG   +AE  A +W+++FP +FYIEIQR
Sbjct: 143  AKAYPLLPDVNPANGLIVLSGAHFGDVGMAIENGNPALAEKNAEKWAQMFPGHFYIEIQR 202

Query: 174  FKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIK 233
              Q N   Q++  + +AS + LP+VATHP+QF+ K EF+AHE RTCIAEGE+L+N KR++
Sbjct: 203  AGQANQEAQVRHAVALASKLGLPVVATHPVQFINKDEFIAHEARTCIAEGEMLANNKRVR 262

Query: 234  KFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDF 293
            KF ++  F +Q+EM +LF+D+P+A+QN++EIAKRCNL L  GKP+LP FPTP  + I++F
Sbjct: 263  KFNEQMRFLSQAEMRELFHDLPAALQNSVEIAKRCNLTLTLGKPQLPNFPTP-GMTIDEF 321

Query: 294  LISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWA 353
            L ++++ GL++RL  LY DP   + ++ RY++RL+FE  TII M F GYFLIV++FIQW 
Sbjct: 322  LRAETRKGLEERLEQLYPDPVKREQQRPRYEERLEFENNTIINMKFPGYFLIVAEFIQWG 381

Query: 354  KNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGR 413
            KNN +P+GPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC E R
Sbjct: 382  KNNDVPIGPGRGSGAGSLVAYALKITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQEKR 441

Query: 414  DRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLI 473
            D VIQ+VKD YG+DAVSQI TFGTMAAKGAIRDVGRV+D  Y+FCD +SKLIPFKPGK +
Sbjct: 442  DLVIQHVKDLYGRDAVSQIATFGTMAAKGAIRDVGRVMDFGYNFCDGVSKLIPFKPGKPV 501

Query: 474  TLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY 533
            +++ AI+EEP L ER +NEEEV QL++LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY
Sbjct: 502  SIAEAIEEEPMLKERQQNEEEVAQLLDLAQQVEGITRNIGMHAGGVLIAPGKLTDFCPLY 561

Query: 534  KQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
             Q G  G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +IK ++ K   F L +LPL
Sbjct: 562  TQGGDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKMLDPKEAEFDLARLPL 621

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            ND+ +Y LL KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC+
Sbjct: 622  NDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCK 681

Query: 654  RKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            RKHGE F+YPDPRT+ +LSETYGIMVYQEQVMQ+AQI+GGYSLG AD+LRRA+GKKK  E
Sbjct: 682  RKHGEKFDYPDPRTESILSETYGIMVYQEQVMQMAQIVGGYSLGGADMLRRAMGKKKAEE 741

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M EHR+ F+ GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALLSY+TAYLK H+ 
Sbjct: 742  MAEHREIFRAGAAKDGLTAQKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHP 801

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG------- 826
            + FMAAN+SL+M+DT K+KILV+D+I  CGL+ILPP+IN S + F P    DG       
Sbjct: 802  AAFMAANMSLAMEDTEKVKILVEDSIDICGLTILPPDINKSDFRFMP----DGPPPSVTG 857

Query: 827  -KHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINS 884
             K  +IRYGLGA KG G++ IEAI+  R  G  FT+LFDF KR+DKK INRR I SLI +
Sbjct: 858  KKVTQIRYGLGACKGAGQNAIEAIIAARTAGGPFTSLFDFCKRVDKKQINRRTIESLIRA 917

Query: 885  GAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKK 944
            GAFDC    R +L+A++  A++ A++  K  NQ+SLF  DD ++L     YVK   ++ +
Sbjct: 918  GAFDCLAIDRAILLATVSFAMECADQEAKAANQVSLFGGDD-SDLVAPPEYVKAAPFTDR 976

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYR 1003
            Q+L EEK  LGF LS H+F  +  E R+F    LSEL+P+     + G+IT ++ + T R
Sbjct: 977  QKLAEEKIALGFYLSGHMFDSFAPEARRFARTKLSELEPSREPRMLCGVITGIRPQMTQR 1036

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
            GKILI+ +DD +  VEV + ++++E+NK + K++E L V GKV EDRF   +RI+AEK+F
Sbjct: 1037 GKILIVTLDDKTAVVEVTVYSEVFEENKRMFKDDEFLAVVGKVSEDRFSGGLRISAEKVF 1096

Query: 1064 DINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLN 1123
            DI  ARI YGK+  +    + ++  + ++L   +  +GLP V      + +   ++    
Sbjct: 1097 DIVTARINYGKQLGMALPSSVDVRKMAEVLAPHRNADGLP-VSARITPQGVGCVVQLGEA 1155

Query: 1124 YKVQPIDDLKLALIN-LGLYNAIIEY 1148
            ++V P D+L+LAL   LG  +  IEY
Sbjct: 1156 WRVAPSDELQLALQQVLGAKDVAIEY 1181


>gi|427400788|ref|ZP_18892026.1| DNA polymerase III, alpha subunit [Massilia timonae CCUG 45783]
 gi|425720301|gb|EKU83224.1| DNA polymerase III, alpha subunit [Massilia timonae CCUG 45783]
          Length = 1164

 Score = 1400 bits (3623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 665/1164 (57%), Positives = 871/1164 (74%), Gaps = 21/1164 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F HLR+HSEYSI+DGL+RI+D+++AA  D QPALA+TDL+N F +++FYK+A  KGIK
Sbjct: 4    PTFTHLRVHSEYSIVDGLVRIDDLVKAAVKDNQPALAVTDLANTFCLVRFYKAARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D WITN+    KP RLL+L KN+ GYLQLC+LL++A++ N + GRAEIR EWLE 
Sbjct: 64   PIVGVDAWITNDDNRDKPHRLLILAKNHTGYLQLCDLLARAWLTNQHKGRAEIRTEWLEA 123

Query: 123  -----------NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEI 171
                           + LI LSGAH GDIG A++NG    AE  A+RW++IFP +FYIEI
Sbjct: 124  LATSVSTLHPDEPQANALIVLSGAHFGDIGQAIENGDLPKAEANAQRWARIFPGHFYIEI 183

Query: 172  QRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKR 231
            QR  QPN   Q++  + +A  + LP+VATHP+QFL K+EF+AHE R CIAEGE+L+N KR
Sbjct: 184  QRAGQPNQEQQVRHSVALAGRLGLPVVATHPVQFLDKSEFIAHEARVCIAEGEMLANAKR 243

Query: 232  IKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININ 291
            +++F +   FK+Q+EM++LF D+P A+ N++EIAKRCN+ L  GKP+LP FPTP  + I+
Sbjct: 244  VRRFNENMCFKSQAEMLELFKDLPGALANSVEIAKRCNVTLTLGKPQLPNFPTP-GMTID 302

Query: 292  DFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQ 351
            +FL++++K GL++RL+ LY DP   + E+ RY+ RL+FE  TIIKM F GYFLIV++FIQ
Sbjct: 303  EFLVAETKKGLEERLVQLYPDPAKREQERPRYEARLEFENNTIIKMKFPGYFLIVAEFIQ 362

Query: 352  WAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPE 411
            W KNN +P+GPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC E
Sbjct: 363  WGKNNGVPIGPGRGSGAGSLVAYALKITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQE 422

Query: 412  GRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGK 471
             R+ VIQ+VKD YG+DAVSQI TFGTMAAKGAIRDVGRVLD  Y+FCD ISKLIPFKPGK
Sbjct: 423  KRELVIQHVKDLYGRDAVSQIATFGTMAAKGAIRDVGRVLDFGYNFCDGISKLIPFKPGK 482

Query: 472  LITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
             ++++ AI+EEP L ER++NEEEV+QL++LA+QVEGI R +GMHAGGVLIAP KL +FCP
Sbjct: 483  PVSIAEAIEEEPLLKERLENEEEVKQLLDLAQQVEGITRGIGMHAGGVLIAPGKLTDFCP 542

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY Q G  G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +IK ++    +F L  L
Sbjct: 543  LYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVNYIKDLDPAEADFDLAAL 602

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D+ +Y LL +A TVA+FQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +F
Sbjct: 603  PLDDRASYKLLSEAKTVAIFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDF 662

Query: 652  CRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
            C+RKHGE F+YPDPRT+ +LSETYGIMVYQEQVMQ+AQI+GGYSLG AD+LRRA+GKKK 
Sbjct: 663  CKRKHGEKFDYPDPRTESILSETYGIMVYQEQVMQMAQIVGGYSLGGADMLRRAMGKKKA 722

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM EHR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALLSY+TAYLK H
Sbjct: 723  EEMAEHREIFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKVH 782

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK- 830
            +++ FMAAN+SL+M+DT KIKILV+DA + C L ILPP++N S++ F P  E   K  K 
Sbjct: 783  HTAAFMAANMSLAMEDTEKIKILVEDAKEVCKLVILPPDVNESQFRFTPEGEPRSKTGKQ 842

Query: 831  ---IRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGA 886
               IRYGLG +KG G+  IEAI+  RK G  F +LFDF KR+D+K INRR I SLI +GA
Sbjct: 843  VTNIRYGLGGVKGAGQGAIEAIIAARKEGGKFKDLFDFCKRVDRKQINRRTIESLIRAGA 902

Query: 887  FDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
             D F   R +L+AS+  A++ A +     NQ+SLF  DD ++L     YVK   W+ +Q+
Sbjct: 903  MDAFGVDRAVLLASVAFAMEAAGQAAAAANQVSLFGGDD-SDLVAPPEYVKATPWTDRQK 961

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGK 1005
            L EEK  LG+ LS H+F  Y  E+R+F    L +L+P+     + G+IT ++ + T RGK
Sbjct: 962  LSEEKIALGYYLSGHMFDSYAQEVRRFAKTKLKDLEPSRDPRMMCGVITGVRTQMTQRGK 1021

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            ILI+ +DD +   EV I +++ E NK+ LKE+E L+V GKV EDRF   +RI AEK+FDI
Sbjct: 1022 ILIVALDDKTAVHEVTIYSEVAEANKHALKEDEFLLVVGKVSEDRFNGGLRITAEKVFDI 1081

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYK 1125
              +RI YG K  +  + + + + +  +L  ++ ++G+P  L    N  I Y M+   +++
Sbjct: 1082 AASRIQYGHKLEMDLSTSIDPAKIADVLQPYRVQDGMPVSLRLETN-GIPYVMQLGDDWR 1140

Query: 1126 VQPIDDLKLAL-INLGLYNAIIEY 1148
            V P D LK AL + LG  +  +EY
Sbjct: 1141 VAPSDTLKQALELTLGAKDVAVEY 1164


>gi|254251803|ref|ZP_04945121.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124894412|gb|EAY68292.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 1177

 Score = 1327 bits (3433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1162 (55%), Positives = 835/1162 (71%), Gaps = 37/1162 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWI N  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWIANPDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLEG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A RW+K+FP  FYIE+QR+ QP     
Sbjct: 124  ELSQ-GLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ  ++A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAASLAASLRLPVVATHPTQFMTADDFTAHEARVCISEGDILANPRRQKRFTTEQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF D+PSAI NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSREGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL+++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLSQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GLS+ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D I    L +LPP+INLS Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCIAN-NLVVLPPDINLSHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R    FT+LFDF +RID++ +NRR I +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRARDEKPFTDLFDFCERIDRRIVNRRTIEALIRAGAFDSLNANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAEANALQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKIGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   + ++L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADAAVLRRVLEPHVSKHDPAAAHAMDAPAPRGGGRDGGRRQQAPLPNGLAVQIHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPIDDL 1132
            N   + EM+    ++V+P D L
Sbjct: 1139 NARAQGEMRLGDAWRVKPSDAL 1160


>gi|407712741|ref|YP_006833306.1| DNA polymerase III subunit alpha [Burkholderia phenoliruptrix
            BR3459a]
 gi|407234925|gb|AFT85124.1| DNA polymerase III subunit alpha [Burkholderia phenoliruptrix
            BR3459a]
          Length = 1196

 Score = 1323 bits (3424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1093 (57%), Positives = 817/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA + N   GRAE+   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVEAGWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GDIG+A+  G  + A+  A  W+K+FP  FYIE+QR  QP     
Sbjct: 127  G-LGEGLLALSGAQQGDIGLALAAGNQEAAKRNALHWAKVFPGGFYIELQRCGQPGGEQY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTPEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ N++EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQDEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y +RL+FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLYPDEAERAAQRETYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLGQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAQHRELF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D I    +++LPP+INLS Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCI-VNKMAVLPPDINLSAYRFEPVAEADGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  RID++ +NRR I +LI +GAFD  ++ R  L+AS
Sbjct: 845  SGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTIEALIRAGAFDSLHQNRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D  +    L  V  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQASANALQAGLFDMGDAPSQGHEL--VDEPEWPEKKKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+GII  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+++E NK + KE+ELL+V G+   D F   IR   E + D+  AR  Y +   V  
Sbjct: 1023 TVFNEIFEANKQLFKEDELLVVQGQARNDAFTGGIRFTVETVMDLGRARCRYAEAVKVKM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADAQALRRVL 1095


>gi|323525323|ref|YP_004227476.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001]
 gi|323382325|gb|ADX54416.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 1196

 Score = 1323 bits (3423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1093 (57%), Positives = 816/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA + N   GRAE+   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVEAGWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GDIG+A+  G  + A   A  W+K+FP  FYIE+QR  QP     
Sbjct: 127  G-LGEGLLALSGAQQGDIGLALAAGNQEAARRNALHWAKVFPGGFYIELQRCGQPGGEQY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTPEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ N++EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQDEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y +RL+FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLYPDEAERAAQRETYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLGQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAQHRELF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D I    +++LPP+INLS Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCI-VNKMAVLPPDINLSAYRFEPVAEADGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  RID++ +NRR I +LI +GAFD  ++ R  L+AS
Sbjct: 845  SGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTIEALIRAGAFDSLHQNRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D  +    L  V  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQASANALQAGLFDMGDAPSQGHEL--VDEPEWPEKKKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+GII  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+++E NK + KE+ELL+V G+   D F   IR   E + D+  AR  Y +   V  
Sbjct: 1023 TVFNEIFEANKQLFKEDELLVVQGQARNDAFTGGIRFTVETVMDLGRARCRYAEAVKVKM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADAQALRRVL 1095


>gi|170691817|ref|ZP_02882981.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170143101|gb|EDT11265.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1196

 Score = 1322 bits (3421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1093 (57%), Positives = 816/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA + N   GRAEI   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEIEAGWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GDIG+A+  G  + A+  A  W+K+FP  FYIE+QR  QP     
Sbjct: 127  G-LGEGLLALSGAQQGDIGLALAAGNQEAAKRNALHWAKVFPGGFYIELQRCGQPGGEQY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTPEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQDEMTALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y +RL+FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLYPDEAERAAQRDTYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLAQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAQHRELF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  RQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D I T  +++LPP+INLS Y F P+ E DGK  K IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCI-TNKMTVLPPDINLSAYRFEPVAEPDGKRSKTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  RID++ +NRR + +LI +GAFD  ++ R  L+AS
Sbjct: 845  SGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTVEALIRAGAFDTLHQNRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D  +    L  V  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQASANALQAGLFDMGDAPSQGHEL--VDEPEWPEKKKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+GII  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E NK + KE+ELL+V G+   D F   IR   + + D+  AR  Y +   V  
Sbjct: 1023 TVFNETFEANKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKVKM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADALALRRVL 1095


>gi|421477960|ref|ZP_15925745.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CF2]
 gi|400225605|gb|EJO55752.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CF2]
          Length = 1179

 Score = 1322 bits (3421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1168 (55%), Positives = 839/1168 (71%), Gaps = 39/1168 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A +KG+K
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G  + A   A+RW+K+FP  FYIE+QR+ QP     
Sbjct: 123  GELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTEQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF D+PSAI NT+EIAKRCNL LE GKPKLP FPTP  ++++D+LI  SK GL
Sbjct: 243  TQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLIQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVKD
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL+++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLSQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GLS+ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D I    L +LPP+IN S Y F P+ E DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCIMN-NLVVLPPDINQSHYRFEPVAEPDGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAFDSLNANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAEANALQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + ELK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK--------------------------------NGLPFVLYY 1108
            N   + + L+++L     K                                NGL   ++Y
Sbjct: 1080 NGNADAAALRRVLEPHVSKHDPAAANAIDAPASSRGGRDREGGRRQPAPLPNGLAVQIHY 1139

Query: 1109 CINKSIKYEMKFPLNYKVQPIDDLKLAL 1136
              N   + EM+    ++V+P D L + L
Sbjct: 1140 S-NARAQGEMRLGDAWRVKPSDALLVEL 1166


>gi|167585898|ref|ZP_02378286.1| DNA polymerase III, alpha subunit [Burkholderia ubonensis Bu]
          Length = 1104

 Score = 1321 bits (3420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1093 (57%), Positives = 814/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWI N  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWIANPDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A+RW+K+FP  FYIE+QR+ QP     
Sbjct: 124  ELAQ-GLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+ + LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAATLAAELKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+LI  SK GL
Sbjct: 243  TQDDMAALFADLPSAVANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLIQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDAASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM EHR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAEHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GLS+ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AAGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L++LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNNLAVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAFDSLNANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAEANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGELKEGRDKVVAGVIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N + + ++L+++L
Sbjct: 1080 NGSADAAVLRRVL 1092


>gi|385203297|ref|ZP_10030167.1| DNA-directed DNA polymerase III PolC [Burkholderia sp. Ch1-1]
 gi|385183188|gb|EIF32462.1| DNA-directed DNA polymerase III PolC [Burkholderia sp. Ch1-1]
          Length = 1193

 Score = 1321 bits (3419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1093 (56%), Positives = 818/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  + +KPSRLLLLVK+  GYL LCELLSKA + N   GRAEI   WLE 
Sbjct: 67   PIAGCDVWITNPDDREKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEIEAGWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GD+G+A+  G  + A+  A  W+K+FP  FYIE+QR  QP     
Sbjct: 127  G-LGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIEVQRCGQPGGEHY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTPEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ N++EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D    + ++  Y +RL+FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLYPDAAEREAQRETYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLAQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM EHR+ F
Sbjct: 666  YPDPRVESVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAEHRELF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  RQGAAKNGLAGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +    +++LPP++NLS Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCL-VNKMAVLPPDVNLSAYRFEPVAEADGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  R+D++ +NRR + +LI +GAFD  +  R  L+AS
Sbjct: 845  SGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDTLHANRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D+ +    L  V  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQASANALQAGLFDMGDSPSQGHEL--VDEPEWPEKKKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E +K + KE+ELL+V G+   D F   IR   + + D+  AR  Y +   V  
Sbjct: 1023 TVFNETFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKVQM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADALALRRVL 1095


>gi|416908899|ref|ZP_11931246.1| DNA polymerase III subunit alpha, partial [Burkholderia sp. TJI49]
 gi|325528701|gb|EGD05777.1| DNA polymerase III subunit alpha [Burkholderia sp. TJI49]
          Length = 1118

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1093 (57%), Positives = 817/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDPGWLD- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G  + A   A+RW+K+FP  FYIE+QR+ QP     
Sbjct: 123  GELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF D+PSAI NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL+++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLSQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GLS+ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D I    L +LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCI-VNNLVVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR I +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTIEALIRAGAFDSLNTNRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAEANALQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + ELK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADATALRRVL 1092


>gi|221211665|ref|ZP_03584644.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1]
 gi|221169026|gb|EEE01494.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1]
          Length = 1179

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1093 (57%), Positives = 818/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A +KG+K
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYRGRAELDARWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G  + A   A+RW+K+FP  FYIE+QR+ QP     
Sbjct: 123  GELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTEQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF D+PSAI NT+EIAKRCNL LE GKPKLP FPTP  ++++D+LI  SK GL
Sbjct: 243  TQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLIQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVKD
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL+++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLSQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GLS+ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D I    L +LPP+IN S Y F P+ E DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCIMN-NLVVLPPDINQSHYRFEPVAEPDGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAFDSLNANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAEANALQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + ELK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|161524140|ref|YP_001579152.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC
            17616]
 gi|189351103|ref|YP_001946731.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC
            17616]
 gi|160341569|gb|ABX14655.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189335125|dbj|BAG44195.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC
            17616]
          Length = 1179

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1093 (57%), Positives = 818/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A +KG+K
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G  + A   A+RW+K+FP  FYIE+QR+ QP     
Sbjct: 123  GELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTEQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF D+PSAI NT+EIAKRCNL LE GKPKLP FPTP  ++++D+LI  SK GL
Sbjct: 243  TQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLIQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVKD
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL+++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLSQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GLS+ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D I    L +LPP+IN S Y F P+ E DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCIMN-NLVVLPPDINQSHYRFEPVAEPDGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAFDSLNANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VTLAMEAAEQAEANALQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + ELK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|187923250|ref|YP_001894892.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187714444|gb|ACD15668.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1192

 Score = 1320 bits (3416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 814/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA + N   GRAE+   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVEAGWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GD+G+A+  G  + A+  A  W+K+FP  FYIE+QR  QP     
Sbjct: 127  G-LGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIELQRSGQPGGEQY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTSEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ N++EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D    + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLGQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM EHR+ F
Sbjct: 666  YPDPRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAEHRELF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  RQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +    +++LPP++NLS Y F P+ E DGK  K IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCLAN-KMAVLPPDVNLSAYRFEPVAEPDGKRSKTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  R+D++ +NRR + +LI +GAFD  +  R  L+AS
Sbjct: 845  SGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDTLHANRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D  +    L  V  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQASANALQAGLFDMGDAPSQGHEL--VDEPEWPEKKKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKNEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E +K + KE+ELL+V G+   D F   IR   + + D+  AR  Y +   V  
Sbjct: 1023 TVFNETFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKVQM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADALALRRVL 1095


>gi|186476833|ref|YP_001858303.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815]
 gi|184193292|gb|ACC71257.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815]
          Length = 1187

 Score = 1320 bits (3415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1099 (56%), Positives = 816/1099 (74%), Gaps = 6/1099 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+DV++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRVHSEFSIADGIVRIDDVVDAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLV+N  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVRNKTGYLNLCELLSKAWLTNQYRGRAEVETAWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GD+G+A+  G  + A+  A+RW++IFP+ FYIE+QR  Q      
Sbjct: 127  G-LAEGLLALSGAQHGDVGLALAAGNQEAAQRNAQRWAQIFPNGFYIELQRGGQAGAEAY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 186  VQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDILANPRRQKRFTTDQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EMI L+ DIPSAI NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQDEMIALYADIPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ +      ++  Y  RL FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLFPEQAERDAQREGYYARLDFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLKERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D   +++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPAAFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGRETVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA + GL++ KA+E F+ +EKFAGYGFNKSHA AYALL+Y+TA+LK H+ + FMAAN+
Sbjct: 726  AEGAARNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +    +++LPP+INLS Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCLAN-KMAVLPPDINLSAYRFEPVAEADGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  RID++ +NRR I +LI +GAFD  +E R  L+AS
Sbjct: 845  SGQNAIEEILRAREEGPFVDIFDFCNRIDRRVVNRRTIEALIRAGAFDSLHENRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++      Q  LF   D  +    L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 905  VSLAMEAADQASANAMQAGLFDIGDAPSQGHEL--VDEPAWPDKRRLQEEKTALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E +K + KE+ELL+V G+   D F   IR   +   D+  AR  + +   V  
Sbjct: 1023 TVFNEQFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTPMDLGRARTRFAQAVKVQM 1082

Query: 1081 NRTFNISILKKILLRFKCK 1099
            N   N   L+ +L  ++ K
Sbjct: 1083 NGNANAHTLRSVLEAYRAK 1101


>gi|221199588|ref|ZP_03572632.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
 gi|221205512|ref|ZP_03578527.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|421467468|ref|ZP_15916087.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            BAA-247]
 gi|221174350|gb|EEE06782.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221180873|gb|EEE13276.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
 gi|400233660|gb|EJO63185.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            BAA-247]
          Length = 1179

 Score = 1320 bits (3415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1093 (57%), Positives = 818/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A +KG+K
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G  + A   A+RW+K+FP  FYIE+QR+ QP     
Sbjct: 123  GELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTEQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF D+PSAI NT+EIAKRCNL LE GKPKLP FPTP  ++++D+LI  SK GL
Sbjct: 243  TQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLIQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVKD
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL+++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLSQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GLS+ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D I    L +LPP+IN S Y F P+ E DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCIMN-NLVVLPPDINQSHYRFEPVAEPDGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAFDSLNANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAEANALQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKIGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|307729084|ref|YP_003906308.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003]
 gi|307583619|gb|ADN57017.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 1199

 Score = 1318 bits (3412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1093 (56%), Positives = 813/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA + N   GRAE+   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVEAGWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GD+G+A+  G  + A+  A  W+K+FP  FYIE+QR  QP     
Sbjct: 127  G-LGEGLLALSGAQQGDVGLALAAGNQEAAKRNALHWAKVFPGGFYIELQRCGQPGGEQY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTPEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF DIPSA+ N++EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQDEMVALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHLSKQGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY D      ++  Y +RL+FE  T+IKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  ETRLAQLYPDEAERAAQRETYYQRLEFECGTVIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEGI RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGITRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLAQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAQHRELF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT K+KIL +D I    +++LPP+INLS Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTEKVKILFEDCIAN-KMTVLPPDINLSAYRFEPVAEADGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  RID++ +NRR + +LI +GAFD  +  R  L+AS
Sbjct: 845  SGQNAIEEILRAREDGAFIDIFDFCNRIDRRVVNRRTVEALIRAGAFDSLHANRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D  +    L  V  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQASANALQAGLFDMGDAPSQGHEL--VDEPEWPEKKKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + ELK      V+GI+  L+ + T RGK++I ++DD +   EV
Sbjct: 963  HLFDAYRDEVRRFVRQKIGELKEGRDKLVAGIVASLRTQMTQRGKMMIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ YE NK + +E+ELL+V G+   D F   IR   + + D+  AR  Y +   V  
Sbjct: 1023 TVFNETYEANKQLFREDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKVKM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADALALRRVL 1095


>gi|91782537|ref|YP_557743.1| DNA polymerase III subunit alpha [Burkholderia xenovorans LB400]
 gi|91686491|gb|ABE29691.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
          Length = 1193

 Score = 1317 bits (3408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  + +KPSRLLLLVK+  GYL LCELLSKA + N   GRAEI   WLE 
Sbjct: 67   PIAGCDVWITNPDDREKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEIEAGWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GDIG+A+  G  + A+  A  W+K+FP  FYIE+QR  QP     
Sbjct: 127  G-LGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGFYIEVQRCGQPGGEHY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTPEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ N++EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQEEMAALFADIPSALTNSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y +RL+FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLYPDEAERAAQRATYYERLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLAQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAQHRELF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  RQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +    +++LPP++NLS Y F P+ E DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCL-VNKMAVLPPDVNLSAYRFEPVAEPDGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  R+D++ +NRR + +LI +GAFD  +  R  L+AS
Sbjct: 845  SGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDSLHANRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D  +    L  V  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQASANALQAGLFDMGDAPSQGHEL--VDEPEWPEKKKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E +K + KE+ELL+V G+   D F   IR   + + D+  AR  Y +   V  
Sbjct: 1023 TVFNETFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKVQM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADALALRRVL 1095


>gi|330817862|ref|YP_004361567.1| DNA polymerase III subunit alpha [Burkholderia gladioli BSR3]
 gi|327370255|gb|AEA61611.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
          Length = 1179

 Score = 1311 bits (3394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1094 (56%), Positives = 820/1094 (74%), Gaps = 7/1094 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KG+K
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDLVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLV++  GYL LCELLSKA++ N   GRAE+  +WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVRDKAGYLNLCELLSKAWLTNQYRGRAEVDAQWLES 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIGIA+  G  + A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 124  ELGQ-GLLALSGAQQGDIGIALAAGNAEAARRHAQRWARVFPGGFYIELQRYGQPGGEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q+   +A+ + LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  VQEAAKLAAELQLPVVATHPLQFMGDEDFTAHEARVCISEGDILANPRRQKRFTIEQRFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM +LF DIPSA+QNT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQAEMAELFADIPSAVQNTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ L+ D      ++  Y +RL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLFPDEAERDAQRATYYQRLEFECNTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYAQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    FI++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPAKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D  +  GL +LPP+IN S+Y F P+ E+DGK  K IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDD-CELNGLKVLPPDINQSEYRFEPVAEADGKRSKTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            +G++ IE I+  RK  G F +LFDF +RID++ +NRR + +LI +GAFD     R  L+A
Sbjct: 842  SGQNAIEEILRARKEGGAFKDLFDFCERIDRRLVNRRTVEALIRAGAFDVLTPNRAQLIA 901

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            S+ +A++ A++ +    Q  LF     +     L  V  P+W +K+ L EEK  LGF LS
Sbjct: 902  SVPLAMEAADQAEANAMQAGLFDMGAESPHAHAL--VDEPAWDEKRRLQEEKGALGFYLS 959

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H+F  Y  E+R+F  + L ELK      V+G+I  L+ + T RGK++I ++DD +   E
Sbjct: 960  GHLFDAYREEVRRFARMKLGELKEGRDKLVAGVIASLRTQMTQRGKMIIALLDDGTGQCE 1019

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVM 1079
            + + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   + 
Sbjct: 1020 ITVFNEQFDANRGLFKEDELLIVQGQARNDAFTGGIRFTAEAVMDLERARSRYAQAVRMT 1079

Query: 1080 FNRTFNISILKKIL 1093
             N   + + L+++L
Sbjct: 1080 MNGNADAAALRRVL 1093


>gi|206560768|ref|YP_002231533.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia J2315]
 gi|421868008|ref|ZP_16299660.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia H111]
 gi|444363816|ref|ZP_21164197.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia BC7]
 gi|444368993|ref|ZP_21168776.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia
            K56-2Valvano]
 gi|198036810|emb|CAR52710.1| putative DNA polymerase III alpha subunit [Burkholderia cenocepacia
            J2315]
 gi|358071939|emb|CCE50538.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia H111]
 gi|443594253|gb|ELT62921.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia BC7]
 gi|443599859|gb|ELT68102.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia
            K56-2Valvano]
          Length = 1177

 Score = 1310 bits (3390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1160 (54%), Positives = 828/1160 (71%), Gaps = 37/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWI N  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A RW+++FP  FYIE+QR+ QP     
Sbjct: 124  ELAQ-GLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSAI NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY        ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  ETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L++LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNNLAVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNPNRAQLIAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAEANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKAALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   +   L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADALALRRVLEPHVSKDDPAAANVIEAPAPRGGGRDGGRRPQAPLPNGLAVQIHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPID 1130
            N   + EM+    ++V+P D
Sbjct: 1139 NARAQGEMRLGDAWRVKPSD 1158


>gi|134296501|ref|YP_001120236.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4]
 gi|134139658|gb|ABO55401.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1177

 Score = 1308 bits (3386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1177 (54%), Positives = 843/1177 (71%), Gaps = 38/1177 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKDKTGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 124  ELSQ-GLLALSGAQQGDIGLALAAGNEEAARRHAQRWAEVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP+QF+ + +F AHE R CI+EG++L+N +R K+FT  Q F+
Sbjct: 183  IQQAATLAASLQLPVVATHPMQFMTEDDFTAHEARVCISEGDMLANPRRQKRFTTAQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M+ LF DIPSA+ NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMVALFADIPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLEQLYPDVAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDAGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ LL
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPTKADWSLAQVPLDDPASFQLL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG-KHKKIRYGLGAIKG 840
            +L+MDDT+K+KIL  D + T  L +LPP+IN S Y F P+ ++DG + + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-TNNLVVLPPDINQSHYRFEPVAQADGTRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +R+D++ +NRR + +LI +GAFD  N  R  ++AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERVDRRIVNRRTVEALIRAGAFDSLNPNRAQMLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD S   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK +LKE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALLKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   + ++L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADAAVLRRVLEPHVSKDEPGVANVVDAPAPRGGGRDGGRRPQAPLPNGLAVQIHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            N   + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 NARAQGEMRLGDAWRVKPSDAL-LAELRATFGGSVVE 1174


>gi|121600233|ref|YP_992382.1| DNA polymerase III subunit alpha, form 1 [Burkholderia mallei SAVP1]
 gi|121229043|gb|ABM51561.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1]
          Length = 1686

 Score = 1308 bits (3386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1174 (54%), Positives = 839/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 516  PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 575

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 576  PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 634

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 635  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 694

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 695  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 754

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 755  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 814

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 815  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 874

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 875  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 934

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 935  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 994

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 995  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 1054

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 1055 SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 1114

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 1115 KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 1174

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 1175 YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 1234

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 1235 AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 1294

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S   F P+ E+DGK  + IRYGLGAIKG
Sbjct: 1295 TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNDRFEPVAEADGKRSRTIRYGLGAIKG 1353

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 1354 SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 1413

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 1414 VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 1471

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 1472 HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1531

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1532 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1591

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1592 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1650

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1651 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1683


>gi|295675964|ref|YP_003604488.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1002]
 gi|295435807|gb|ADG14977.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1196

 Score = 1307 bits (3383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1093 (56%), Positives = 817/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++ AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA + N   GRAEI   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEIEAGWLET 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GDIG+A+  G  + A+  AR W+K+FP  FYIE+QR+ QP     
Sbjct: 127  G-LGEGLLALSGAQQGDIGLALAAGNEEAAKRNARHWAKVFPGGFYIELQRYGQPGGEQY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTSEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ NT++IAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQQEMATLFADIPSALANTVQIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y +RL+FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLYPDEAERDAQRPTYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG +AVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDSGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLGQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAQHREIF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA + GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  AEGAARNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +    +++LPP++NLS Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCLAN-KMAVLPPDVNLSAYRFEPVAEADGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  R+D++ +NRR I +LI +GAFD  +  R  L+AS
Sbjct: 845  SGQNAIEEILRAREDGRFIDIFDFCNRVDRRIVNRRTIEALIRAGAFDTLHANRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D  +    L  V  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQAAANALQAGLFDMGDAPSQGHEL--VDEPEWPEKRKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+++E++K + KE+ELL+V G+   D F   IR   E + D+  AR  Y     V  
Sbjct: 1023 TVFNEVFEEHKQLFKEDELLVVQGQARNDAFTGGIRFTVETVMDLGRARCRYADSLKVQM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADAQALRRVL 1095


>gi|387902861|ref|YP_006333200.1| DNA polymerase III subunit alpha [Burkholderia sp. KJ006]
 gi|387577753|gb|AFJ86469.1| DNA polymerase III alpha subunit [Burkholderia sp. KJ006]
          Length = 1177

 Score = 1306 bits (3380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1177 (54%), Positives = 841/1177 (71%), Gaps = 38/1177 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKDKTGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 124  ELSQ-GLLALSGAQQGDIGLALAAGNEEAARRHAQRWAEVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP+QF+ + +F AHE R CI+EG++L+N +R K+FT  Q F+
Sbjct: 183  IQQAATLAASLQLPVVATHPMQFMTEDDFTAHEARVCISEGDMLANPRRQKRFTTAQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M+ LF DIPSA+ NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMVALFADIPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLEQLYPDVAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDAGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ LL
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPTKADWSLAQVPLDDPASFQLL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG-KHKKIRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L +LPP+IN S Y F P+ ++DG + + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCVSN-NLVVLPPDINQSHYRFEPVAQADGTRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +R+D++ +NRR + +LI +GAFD  N  R  ++AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERVDRRIVNRRTVEALIRAGAFDSLNPNRAQMLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD S   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   + ++L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADAAVLRRVLEPHVSKDEPGAANVVDAPAPRGGGRDGGRRPQAPLPNGLAVQIHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            N   + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 NARAQGEMRLGDAWRVKPSDAL-LAELRATFGGSVVE 1174


>gi|172061275|ref|YP_001808927.1| DNA polymerase III subunit alpha [Burkholderia ambifaria MC40-6]
 gi|171993792|gb|ACB64711.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1190

 Score = 1306 bits (3379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1177 (54%), Positives = 838/1177 (71%), Gaps = 38/1177 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 17   PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 76

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 77   PIAGCDVWITNPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 136

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A   G  + A   A RW+K+FP  FYIE+QR+ QP     
Sbjct: 137  ELSQ-GLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQRYGQPGAEAY 195

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG++L+N +R K+FT +Q F+
Sbjct: 196  IQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQKRFTTDQYFR 255

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF D+PSA+ NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 256  TQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 315

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 316  EKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 375

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 376  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 435

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 436  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 495

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 496  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 555

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 556  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSLAQVPLDDPASFQIL 615

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 616  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 675

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 676  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 735

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 736  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 795

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L +LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 796  TLAMDDTDKVKILFDDCV-VNNLVVLPPDINQSHYRFEPVGEADGKRSRTIRYGLGAVKG 854

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  ++AS
Sbjct: 855  SGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNANRAQMLAS 914

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 915  VPLAMEAAEQAAANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 972

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD S   E+
Sbjct: 973  HLFDAYRDEVRRFVRQKIGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEI 1032

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   +R  A+ + D+  AR  Y +   +  
Sbjct: 1033 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGLRFTADTVMDLERARSRYAQAVRLTM 1092

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   + + L+++L     K                              NGL   ++Y  
Sbjct: 1093 NGNADAAALRRVLEPHVSKDDSAAAPAFEAPVPRGGGRDGGRRPQAPLPNGLAVQVHYS- 1151

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            N   + EM+    ++V+P D L LA +      +++E
Sbjct: 1152 NARAQGEMRLGDAWRVKPSDTL-LAELRATFDGSVVE 1187


>gi|312796952|ref|YP_004029874.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312168727|emb|CBW75730.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1198

 Score = 1305 bits (3377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1093 (56%), Positives = 821/1093 (75%), Gaps = 5/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D +E AA D Q ALA+TDL+N FG+++FYK+A   G+K
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDAVERAAEDGQGALALTDLANAFGLVRFYKAARAHGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G DVW++N  +  KP+RLLLLVK+  GYL LCELLS+A++ N   GRAE+  +WLE 
Sbjct: 64   PIVGADVWVSNPDDRDKPARLLLLVKDRRGYLNLCELLSRAWLTNQYRGRAEVDCQWLET 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GDIGIA+  G    A   A+RW+ IFP+ FYIE+QR +QP +   
Sbjct: 124  G-LAEGLLALSGAQHGDIGIALAAGNVQAATRHAQRWAAIFPNAFYIELQRMRQPGVEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+ + LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+F+ +Q F 
Sbjct: 183  VQQAVELAAQLKLPVVATHPVQFMTPEDFTAHEARVCISEGDILANPRRAKRFSTDQYFF 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M +LF DIPSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQQQMGELFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKTGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D       +  Y++RL FE +TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EQRLEQLFPDATQRNARRQTYQERLAFECDTIIKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC +GRDRVIQYVK 
Sbjct: 363  GRGSGAGSLVAFALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQDGRDRVIQYVKS 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y+F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYNFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  NE+EVRQL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLAQVPLDDPASFTIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            K ANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 603  KNANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREMVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPILKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRELF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  REGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKVHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D I    L++LPP+IN S Y F P+ ++ GK  K IRYGLGAIKG
Sbjct: 783  SLAMDDTDKVKILFEDCIANH-LAVLPPDINQSAYRFEPVADAPGKRSKTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F++LFDF +R+D++ +NRR I +LI +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRARESQPFSDLFDFCERVDRRIVNRRTIEALIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D ++  ++   V  P+W++K++L EEK  LGF +S 
Sbjct: 902  VPLAMEAAEQASANALQGGLFDMPDGSSGHQH-ELVDEPAWTEKRKLQEEKAALGFYISG 960

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      ++G+IT ++ + T RGK+L+ V+DD +   EV
Sbjct: 961  HLFDAYKDEVRRFVRQKIGELKEGRDKVIAGVITAMRTQMTQRGKMLVAVLDDGTGQCEV 1020

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N++Y+ N+ I KE+ELL+V G+   D F   IR   + + D+  AR  Y     +  
Sbjct: 1021 TVFNEIYDANRPIFKEDELLVVQGQARNDSFTGGIRFTVDIVMDLERARRRYADSLLLSV 1080

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+ +L
Sbjct: 1081 NGNADPRRLRDLL 1093


>gi|390570355|ref|ZP_10250622.1| DNA polymerase III subunit alpha [Burkholderia terrae BS001]
 gi|389937687|gb|EIM99548.1| DNA polymerase III subunit alpha [Burkholderia terrae BS001]
          Length = 1186

 Score = 1303 bits (3373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1099 (56%), Positives = 815/1099 (74%), Gaps = 6/1099 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+DV+++AA D Q ALA+TDL N FG+++FY+ A  KG+K
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDVVDSAAKDGQGALALTDLGNAFGLVRFYQEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKNKTGYLNLCELLSKAWLTNQYRGRAEVEPAWLEG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               +  L      H GD+G+A+  G  + A+  A+RW+ IFP+ FYIE+QR  QP +   
Sbjct: 124  GLGEGLLALSGAQH-GDVGMALAAGNEEAAKRNAQRWATIFPNGFYIELQRGGQPGVEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG++L+N +R K+FT +Q F+
Sbjct: 183  VQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDMLANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM+ LF DIPSA+ NTIEIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQAEMVALFADIPSAVANTIEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ +      ++  Y  RL FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLEQLFPEQAERDAQRETYYARLDFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 483  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++++L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFSIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ KA+E F+ +EKFAGYGFNKSHA AYALL+Y+TA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +    +++LPP+IN+S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  SLAMDDTDKVKILFEDCLAN-KMAVLPPDINMSAYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  RID++ +NRR + +LI +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEGLFIDIFDFCNRIDRRIVNRRTVEALIRAGAFDSLHENRAQLIAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++      Q  LF   D  +    L  +  P+W +K+ L EEK  LGF LS 
Sbjct: 902  VSLAMEAADQASANAMQAGLFDMGDAPSQGHEL--IDEPAWPEKRRLQEEKTALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   EV
Sbjct: 960  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E +K + KE+ELL+V G+   D F   IR   +   D+  AR  Y +   V  
Sbjct: 1020 TVFNEQFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTPMDLGRARTRYAQAVKVQM 1079

Query: 1081 NRTFNISILKKILLRFKCK 1099
            N   N  +L+ +L  ++ K
Sbjct: 1080 NGNANALVLRSVLEAYRAK 1098


>gi|254247600|ref|ZP_04940921.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124872376|gb|EAY64092.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 1177

 Score = 1303 bits (3373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1177 (54%), Positives = 836/1177 (71%), Gaps = 38/1177 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWI N  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A RW+++FP  FYIE+QR+ QP     
Sbjct: 124  ELAQ-GLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF D+PSAI NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY        ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L++LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNNLAVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNPNRAQLIAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAEANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKAALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   +   L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADALALRRVLEPHVSKDDPAAANGVDAPAPRGGGRDGGRRPQPPLPNGLAVQIHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            N   + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 NARAQGEMRLGDAWRVKPSDVL-LAELRAAFDGSVVE 1174


>gi|170701606|ref|ZP_02892552.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
 gi|170133489|gb|EDT01871.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
          Length = 1177

 Score = 1303 bits (3372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1177 (54%), Positives = 838/1177 (71%), Gaps = 38/1177 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A   G  + A   A RW+K+FP  FYIE+QR+ QP     
Sbjct: 124  ELSQ-GLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG++L+N +R K+FT +Q F+
Sbjct: 183  IQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M+ LF D+PSA+ NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L +LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNNLVVLPPDINQSHYRFEPVGEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  ++AS
Sbjct: 842  SGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNANRAQMLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD S   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKIGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   +R  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGLRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   + + L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADATALRRVLEPHVSKDDSAAAPAFEAPVPRGGGRDGGRRPQAPLPNGLAVQVHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            N   + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 NARAQGEMRLGDAWRVKPSDTL-LAELRATFDGSVVE 1174


>gi|115352403|ref|YP_774242.1| DNA polymerase III subunit alpha [Burkholderia ambifaria AMMD]
 gi|115282391|gb|ABI87908.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD]
          Length = 1177

 Score = 1303 bits (3372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1177 (54%), Positives = 837/1177 (71%), Gaps = 38/1177 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A      + A   A RW+K+FP  FYIE+QR+ QP     
Sbjct: 124  ELSQ-GLLALSGAQQGDIGLAFAADNEEAARRHAERWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG++L+N +R K+FT +Q F+
Sbjct: 183  IQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM+ LF D+PSA+ NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D I    L +LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCI-VNNLVVLPPDINQSHYRFEPVGEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  ++AS
Sbjct: 842  SGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNANRAQMLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD S   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKIGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   +R  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGLRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   + + L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADAAALRRVLEPHVSKDDSAAAPAFEAPVPRGGGRDGGRRPQAPLPNGLAVQVHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            N   + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 NARAQGEMRLGDAWRVKPSDTL-LAELRATFDGSVVE 1174


>gi|171318166|ref|ZP_02907332.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
 gi|171096634|gb|EDT41523.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
          Length = 1177

 Score = 1303 bits (3371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1177 (54%), Positives = 838/1177 (71%), Gaps = 38/1177 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A   G  + A   A RW+K+FP  FYIE+QR+ QP     
Sbjct: 124  ELSQ-GLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG++L+N +R K+FT +Q F+
Sbjct: 183  IQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M+ LF D+PSA+ NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L +LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNNLVVLPPDINQSHYRFEPVGEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F++LFDF +RID++ +NRR + +LI +GAFD  N  R  ++AS
Sbjct: 842  SGQNAIEEILRAREEKPFSDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNANRAQMLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD S   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKIGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   +R  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGLRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   + + L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADAAALRRVLEPHVSKDDSAAAPAFEAPVPRGGGRDGGRRPQAPLPNGLAVQVHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            N   + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 NARAQGEMRLGDAWRVKPSDTL-LAELRATFDGSVVE 1174


>gi|420254130|ref|ZP_14757149.1| DNA-directed DNA polymerase III PolC [Burkholderia sp. BT03]
 gi|398049891|gb|EJL42284.1| DNA-directed DNA polymerase III PolC [Burkholderia sp. BT03]
          Length = 1189

 Score = 1303 bits (3371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1099 (56%), Positives = 815/1099 (74%), Gaps = 6/1099 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+DV+++AA D Q ALA+TDL N FG+++FY+ A  KG+K
Sbjct: 7    PRFVHLRVHSEFSIADGIVRIDDVVDSAAKDGQGALALTDLGNAFGLVRFYQEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVKNKTGYLNLCELLSKAWLTNQYRGRAEVEPAWLEG 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               +  L      H GD+G+A+  G  + A+  A+RW+ IFP+ FYIE+QR  QP +   
Sbjct: 127  GLGEGLLALSGAQH-GDVGMALAAGNEEAAKRNAQRWATIFPNGFYIELQRGGQPGVEAY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG++L+N +R K+FT +Q F+
Sbjct: 186  VQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDMLANPRRQKRFTTDQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM+ LF DIPSA+ NTIEIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  TQAEMVALFADIPSAVANTIEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ +      ++  Y  RL FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLEQLFPEQAERDAQRETYYARLDFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ KA+E F+ +EKFAGYGFNKSHA AYALL+Y+TA+LK H+ + FMAAN+
Sbjct: 726  AEGAAKNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +    +++LPP+IN+S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCLAN-KMAVLPPDINMSAYRFEPVAEADGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  RID++ +NRR + +LI +GAFD  +E R  L+AS
Sbjct: 845  SGQNAIEEILRAREEGLFIDIFDFCNRIDRRIVNRRTVEALIRAGAFDSLHENRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++      Q  LF   D  +    L  +  P+W +K+ L EEK  LGF LS 
Sbjct: 905  VSLAMEAADQASANAMQAGLFDMGDAPSQGHEL--IDEPTWPEKRRLQEEKTALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E +K + KE+ELL+V G+   D F   IR   +   D+  AR  Y +   V  
Sbjct: 1023 TVFNEQFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTPMDLGRARTRYAQAVKVQM 1082

Query: 1081 NRTFNISILKKILLRFKCK 1099
            N   N  +L+ +L  ++ K
Sbjct: 1083 NGNANALVLRSVLEAYRAK 1101


>gi|126440764|ref|YP_001058246.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 668]
 gi|126220257|gb|ABN83763.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668]
          Length = 1274

 Score = 1302 bits (3370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1174 (54%), Positives = 840/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 104  PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 163

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 164  PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 222

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 223  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 282

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 283  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 342

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 343  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 402

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 403  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 462

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 463  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 522

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 523  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 582

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 583  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 642

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 643  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 702

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 703  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 762

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 763  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 822

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 823  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 882

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 883  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 941

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 942  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 1001

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 1002 VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 1059

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 1060 HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1119

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1120 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1179

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1180 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1238

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1239 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1271


>gi|402565888|ref|YP_006615233.1| DNA polymerase III subunit alpha [Burkholderia cepacia GG4]
 gi|402247085|gb|AFQ47539.1| DNA polymerase III subunit alpha [Burkholderia cepacia GG4]
          Length = 1177

 Score = 1302 bits (3370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1177 (54%), Positives = 839/1177 (71%), Gaps = 38/1177 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWITNPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A   G  + A   A RW+K+FP  FYIE+QR+ QP     
Sbjct: 124  ELSQ-GLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIEMQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+ + LP+VATHP QF+   +F AHE R CI+EG++L+N +R K+FT +Q F+
Sbjct: 183  IQQAATLAAALQLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M+ LF D+PSA+ NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ D      ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLAQLFPDAAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVQHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+Y+TA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYFTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D I    L++LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCI-VNNLAVLPPDINASHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKRFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNANRAQLIAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++      Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAAANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD S   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK------------------------------NGLPFVLYYCI 1110
            N   + ++L+++L     K                              NGL   ++Y  
Sbjct: 1080 NGNADAAVLRRVLEPHVSKDDPAAAQAVEAPAPRGGGRDGGRRPQAPLPNGLAVQVHYS- 1138

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            N   + EM+    ++V+P D L LA +      +I+E
Sbjct: 1139 NARAQGEMRLGDAWRVKPSDTL-LAELRATFGGSIVE 1174


>gi|418541608|ref|ZP_13107083.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1258a]
 gi|418547851|ref|ZP_13112987.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1258b]
 gi|385357530|gb|EIF63580.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1258a]
 gi|385359525|gb|EIF65481.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1258b]
          Length = 1174

 Score = 1302 bits (3369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1174 (54%), Positives = 840/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1080 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1138

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1171


>gi|170733672|ref|YP_001765619.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia MC0-3]
 gi|169816914|gb|ACA91497.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3]
          Length = 1175

 Score = 1301 bits (3367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 811/1093 (74%), Gaps = 8/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWI N  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A RW+++FP  FYIE+QR+ QP     
Sbjct: 124  ELAQ-GLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF D+PSAI NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY        ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+++++   ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDSSKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L++LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNNLAVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNPNRAQLIAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++ +    Q  LF    +   +     V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAEANAMQAGLF----DMGAESPHALVDEPAWDDKRRLQEEKAALGFYLSG 957

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 958  HLFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1017

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1018 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1077

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1078 NGNADALALRRVL 1090


>gi|209517596|ref|ZP_03266435.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
 gi|209502009|gb|EEA02026.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
          Length = 1189

 Score = 1301 bits (3367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++ AAA D Q ALA+TDL N FG+++FY+ A  KG+K
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYQEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA + N   GRAE+   WLE 
Sbjct: 67   PIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVEAGWLES 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GDIG+A+  G  + A   AR W+K+FP  FYIE+QR   P     
Sbjct: 127  G-LGEGLLALSGAQQGDIGLALAAGNEEAARRNARHWAKVFPGGFYIELQRCGLPGGEQY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A+++ LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 186  VQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTAEQYFR 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIPSA+ NT++IAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 246  SQQEMAELFADIPSALANTVQIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y +RL+FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 306  EKRLAQLYPDEAERDAQRATYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L +TD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 366  GRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG +AVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 426  KYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q   +G++
Sbjct: 486  PLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVV 545

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++++L
Sbjct: 546  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLGQVPLDDPASFSIL 605

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 606  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREVVE 665

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 666  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 725

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA   GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 726  AEGAAVNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 785

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +    +++LPP++NLS Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 786  SLAMDDTDKVKILFEDCLAN-KMAVLPPDVNLSAYRFEPVAETDGKRSRTIRYGLGAIKG 844

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F ++FDF  R+D++ +NRR I +LI +GAFD  +  R  L+AS
Sbjct: 845  SGQNAIEEILRAREEGRFIDIFDFCNRVDRRIVNRRTIEALIRAGAFDTLHPNRAQLIAS 904

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF   D  +    L  +  P W +K++L EEK  LGF LS 
Sbjct: 905  VSLAMEAAEQAAANALQAGLFDMGDAPSQGHEL--IDEPEWPEKRKLQEEKAALGFYLSG 962

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I  L+ + T RGK+LI ++DD +   EV
Sbjct: 963  HLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQCEV 1022

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+++E++K + KE+ELL+V G+   D F   IR   E + D+  AR  Y     V  
Sbjct: 1023 TVFNEVFEEHKQLFKEDELLVVQGQARNDAFTGGIRFTVETVMDLGRARCRYADSVKVQM 1082

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1083 NGNADAQALRRVL 1095


>gi|126453191|ref|YP_001065485.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 1106a]
 gi|242315814|ref|ZP_04814830.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
 gi|254298453|ref|ZP_04965905.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|386862470|ref|YP_006275419.1| DNA polymerase III subunit alpha, form 1 [Burkholderia pseudomallei
            1026b]
 gi|418538107|ref|ZP_13103735.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1026a]
 gi|126226833|gb|ABN90373.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a]
 gi|157808232|gb|EDO85402.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|242139053|gb|EES25455.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
 gi|385348867|gb|EIF55463.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1026a]
 gi|385659598|gb|AFI67021.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1026b]
          Length = 1174

 Score = 1301 bits (3366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1174 (54%), Positives = 840/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGGEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1080 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1138

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1171


>gi|53718752|ref|YP_107738.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei K96243]
 gi|237811495|ref|YP_002895946.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei MSHR346]
 gi|254181269|ref|ZP_04887866.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|254195140|ref|ZP_04901569.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|254261192|ref|ZP_04952246.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
 gi|418390008|ref|ZP_12967820.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            354a]
 gi|418554029|ref|ZP_13118829.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            354e]
 gi|52209166|emb|CAH35110.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei
            K96243]
 gi|169651888|gb|EDS84581.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|184211807|gb|EDU08850.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|237506197|gb|ACQ98515.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346]
 gi|254219881|gb|EET09265.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
 gi|385370976|gb|EIF76198.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            354e]
 gi|385375798|gb|EIF80539.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            354a]
          Length = 1174

 Score = 1301 bits (3366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1174 (54%), Positives = 840/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1080 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1138

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1171


>gi|413963137|ref|ZP_11402364.1| DNA polymerase III subunit alpha [Burkholderia sp. SJ98]
 gi|413928969|gb|EKS68257.1| DNA polymerase III subunit alpha [Burkholderia sp. SJ98]
          Length = 1170

 Score = 1301 bits (3366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1159 (54%), Positives = 831/1159 (71%), Gaps = 30/1159 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A   G+K
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGMGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLV++  GYL LCELLS+A++ N   GRAE+ +EWLE+
Sbjct: 64   PIAGCDVWITNPADRDKPSRLLLLVRDKQGYLNLCELLSRAWLTNQYRGRAEVMVEWLEE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                 GL+ALSGA  GDIG+A+  G    A+  A RW+K+FP+ FYIE+QR  QP     
Sbjct: 124  G-LATGLLALSGAQGGDIGMALAAGNVQSAQRNAERWTKLFPNAFYIELQRAGQPGEQAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q+ + +A+ + LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT++Q F+
Sbjct: 183  VQEAVKLAAKLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTQDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDEMCALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY D      ++  Y  RL FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EVRLQQLYPDEAERSAQRETYYARLDFECGTIIKMGFPGYFLIVADFIMWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQYVK 
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQYVKG 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  +E+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PTLQERFDSEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGEDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREIVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ KA+E F+ +EKFAGYGFNKSHA AYALL+Y+TA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            SL+MDDT+K+KIL +D +   G+++LPP+IN S Y F P+ E+DGK  K IRYGLGA+KG
Sbjct: 783  SLAMDDTDKVKILFEDCLAN-GMAVLPPDINQSAYRFEPVAEADGKRSKTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F +LFDF +RID++ +NRR + +LI +GAFD  +  R  L+AS
Sbjct: 842  SGQNAIEEILRAREDGPFVDLFDFCERIDRRVVNRRTVEALIRAGAFDSIHANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++      Q  LF   D    K    YV    WS K+ L EEK  LGF LS 
Sbjct: 902  VPMAMEAADQAAANAMQAGLFDMGDAPLAKH--EYVDEAEWSDKKRLQEEKTALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      ++G+I+ ++ + T RGK+LI+ +DD S   EV
Sbjct: 960  HLFDAYKGEVRRFVRQKIGELKEGRDKLIAGVISAMRTQMTQRGKMLIVNLDDGSGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E NK + KE+ELL+V G    D F   IR   +   D+  AR  Y +   V  
Sbjct: 1020 TVFNEQFEANKALFKEDELLVVQGMARNDAFTGGIRFTVDTAMDLERARSRYAQSVKVEM 1079

Query: 1081 NRTFNISILKKILLRFKC-----------------------KNGLPFVLYYCINKSIKYE 1117
            N   +   L+++L                             NGL   + Y  ++  + E
Sbjct: 1080 NGNADALRLRRVLEAHAAGAQEAPPPMPVKENGRQRQSAPIPNGLNVSIVY-RSEHAEGE 1138

Query: 1118 MKFPLNYKVQPIDDLKLAL 1136
            ++    ++V+P DDL  AL
Sbjct: 1139 VRLGDAWRVKPTDDLITAL 1157


>gi|107023251|ref|YP_621578.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia AU 1054]
 gi|116690334|ref|YP_835957.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia HI2424]
 gi|105893440|gb|ABF76605.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054]
 gi|116648423|gb|ABK09064.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1177

 Score = 1300 bits (3365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1093 (56%), Positives = 809/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWI N  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A RW+++FP  FYIE+QR+ QP     
Sbjct: 124  ELAQ-GLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+++ LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF D+PSAI NT+EIAKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY        ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++     +SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAEWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L++LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNNLAVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNPNRAQLIAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAEANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKAALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1080 NGNADALALRRVL 1092


>gi|78067124|ref|YP_369893.1| DNA polymerase III subunit alpha [Burkholderia sp. 383]
 gi|77967869|gb|ABB09249.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383]
          Length = 1176

 Score = 1300 bits (3364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1176 (53%), Positives = 833/1176 (70%), Gaps = 37/1176 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+D+++AAA D Q ALA+TDL N FG+++FY+ A  KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWI N  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WL+ 
Sbjct: 64   PIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASWLDG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A+  G  + A   A RW+K+FP  FYIE+QR+ QP     
Sbjct: 124  ELSQ-GLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ   +A+ + LP+VATHP QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAATLAAALKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSAI NT+E+AKRCNLKLE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMAALFADLPSAIANTVEVAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY        ++  Y KRL+FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  ETRLAQLYPAEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER  +E+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    +++L ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWALAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA   GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAATNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +    L++LPP+IN S Y F P+ E+DGK  + IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNNLAVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   FT+LFDF +RID++ +NRR + +LI +GAFD  N  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNTNRAQLIAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++ +    Q  LF     +     L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAADQAEANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   + +LK      V+GII  L+ + T RGK+LI ++DD S   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             I N+ +E NK + KE+ELLIV G+   D F   IR   + + D+  AR  Y +   +  
Sbjct: 1020 TIFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTTDTVMDLERARSRYAQAVRLTM 1079

Query: 1081 NRTFNISILKKILLRFKCK-----------------------------NGLPFVLYYCIN 1111
            N   + + L+++L     K                             NGL   ++Y  N
Sbjct: 1080 NGNADAAALRRVLEPHVSKDDPAANVVEAPAPRGGGRDGGRRPQAPLPNGLAVQVHYS-N 1138

Query: 1112 KSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
               + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 ARAQGEMRLGDAWRVKPSDVL-LAELRATFDGSVVE 1173


>gi|134281214|ref|ZP_01767923.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|226195389|ref|ZP_03790978.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan
            9]
 gi|403517916|ref|YP_006652049.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei BPC006]
 gi|134247520|gb|EBA47605.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|225932591|gb|EEH28589.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan
            9]
 gi|403073559|gb|AFR15139.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei BPC006]
          Length = 1234

 Score = 1300 bits (3364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1174 (54%), Positives = 840/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 64   PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 123

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 124  PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 182

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 183  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGGEAY 242

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 243  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 302

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 303  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 362

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 363  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 422

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 423  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 482

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 483  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 542

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 543  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 602

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 603  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 662

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 663  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 722

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 723  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 782

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 783  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 842

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 843  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 901

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 902  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 961

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 962  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 1019

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 1020 HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1079

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1080 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1139

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1140 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1198

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1199 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1231


>gi|217420148|ref|ZP_03451654.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
 gi|217397452|gb|EEC37468.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
          Length = 1234

 Score = 1300 bits (3364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1174 (54%), Positives = 840/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 64   PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 123

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 124  PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 182

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 183  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 242

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 243  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 302

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 303  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 362

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 363  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 422

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 423  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 482

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 483  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 542

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 543  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 602

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 603  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 662

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 663  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 722

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 723  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 782

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 783  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 842

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 843  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 901

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 902  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 961

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 962  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 1019

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 1020 HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1079

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1080 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1139

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1140 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1198

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1199 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1231


>gi|254190629|ref|ZP_04897136.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
 gi|157938304|gb|EDO93974.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
          Length = 1174

 Score = 1299 bits (3362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1174 (54%), Positives = 839/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGGEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA  NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSARANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1080 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1138

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1171


>gi|350544975|ref|ZP_08914494.1| DNA polymerase III alpha subunit [Candidatus Burkholderia kirkii
            UZHbot1]
 gi|350527236|emb|CCD38622.1| DNA polymerase III alpha subunit [Candidatus Burkholderia kirkii
            UZHbot1]
          Length = 1176

 Score = 1298 bits (3360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1093 (57%), Positives = 810/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A   G+K
Sbjct: 9    PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGAGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLV++  GYL LCELLS+A++ N   GRAE+ +EWLE+
Sbjct: 69   PIAGCDVWITNPDDRDKPSRLLLLVRDKQGYLNLCELLSRAWLTNQYRGRAEVMVEWLEE 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ALSGA  GDIG+A+  G    A+  A RW+K+F   FYIE+QR  QP     
Sbjct: 129  G-LAEGLLALSGAQAGDIGMALAAGNTASAQRHAERWAKLFQSAFYIELQRAGQPGEQAY 187

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   + +A+ + LP VATHP+QF    +F AHE R CI+EG+IL+N +R K+FTKEQ+F+
Sbjct: 188  ITGAVALAAKLRLPAVATHPMQFTTPDDFTAHEARVCISEGDILANPRRQKRFTKEQHFR 247

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM +LF DIPS + NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 248  TQDEMCELFADIPSVLANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSQEGL 307

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY D      ++  Y KRL FE  TII+M FSGYFLIV+DFI WAKNN +PVGP
Sbjct: 308  EVRLQQLYPDEAERDAQRETYYKRLDFECGTIIRMGFSGYFLIVADFIMWAKNNGVPVGP 367

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQYVKD
Sbjct: 368  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQYVKD 427

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 428  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 487

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  +E+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL NFCPLY Q    G++
Sbjct: 488  PALQERFDSEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTNFCPLYTQGEDGGVV 547

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    +++L ++PL+D  ++++L
Sbjct: 548  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWNLAQVPLDDPASFSIL 607

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 608  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREITE 667

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 668  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 727

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 728  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 787

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG-KHKKIRYGLGAIKG 840
            SL+MDDT+K+KIL +D     GLS+LPP+IN S Y F P+ E+DG + K IRYGLGA+KG
Sbjct: 788  SLAMDDTDKVKILFEDCAAN-GLSVLPPDINKSAYRFEPVAEADGTRSKTIRYGLGAVKG 846

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F +LFDF +RID++ +NRR + +LI SGAFD  +  R  L+AS
Sbjct: 847  SGQNAIEEILRAREDGPFVDLFDFCERIDRRIVNRRTVEALIRSGAFDTLHANRAQLLAS 906

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++      Q  LF   D    +  L  V  P+W  K+ L EEK  LGF LS 
Sbjct: 907  VPLAMEAADQAAANAMQAGLFDMGDTPLARHEL--VDEPAWPDKRRLQEEKTALGFYLSG 964

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R F+   + ELK      V+G+I+ ++ + T RGK+LI+ +DD S   EV
Sbjct: 965  HLFDAYKGEVRCFVRQKIGELKEGRDKLVAGVISAMRTQMTQRGKMLIVNLDDGSGQCEV 1024

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E NK + KE+ELL+V G    D F   IR   +   D+  AR  Y +   V  
Sbjct: 1025 TVFNEQFEANKALFKEDELLVVQGMARNDAFTGGIRFTVDTAMDLGRARSRYAQSVKVEM 1084

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1085 NGNADALRLRRVL 1097


>gi|53725488|ref|YP_103508.1| DNA polymerase III subunit alpha [Burkholderia mallei ATCC 23344]
 gi|67640628|ref|ZP_00439428.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|124383354|ref|YP_001026814.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10229]
 gi|126449054|ref|YP_001079902.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10247]
 gi|167000890|ref|ZP_02266691.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
 gi|254175785|ref|ZP_04882445.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|254202193|ref|ZP_04908556.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|254207520|ref|ZP_04913870.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|254359936|ref|ZP_04976206.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|52428911|gb|AAU49504.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei ATCC
            23344]
 gi|124291374|gb|ABN00643.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229]
 gi|126241924|gb|ABO05017.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247]
 gi|147746440|gb|EDK53517.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|147751414|gb|EDK58481.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|148029176|gb|EDK87081.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|160696829|gb|EDP86799.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|238521386|gb|EEP84838.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|243063197|gb|EES45383.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
          Length = 1174

 Score = 1298 bits (3359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1174 (54%), Positives = 839/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S   F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNDRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1080 NGNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYS-NAR 1138

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1171


>gi|167918166|ref|ZP_02505257.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei BCC215]
          Length = 1111

 Score = 1298 bits (3358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|167823354|ref|ZP_02454825.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 9]
          Length = 1102

 Score = 1297 bits (3356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGGEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|167718737|ref|ZP_02401973.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei DM98]
          Length = 1103

 Score = 1297 bits (3356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|167814912|ref|ZP_02446592.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 91]
          Length = 1107

 Score = 1297 bits (3356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|167901900|ref|ZP_02489105.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei NCTC
            13177]
 gi|167910136|ref|ZP_02497227.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 112]
          Length = 1104

 Score = 1296 bits (3355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|167737755|ref|ZP_02410529.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 14]
          Length = 1103

 Score = 1296 bits (3355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE ++  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEVLRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|167844904|ref|ZP_02470412.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei B7210]
          Length = 1109

 Score = 1296 bits (3354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|167893446|ref|ZP_02480848.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 7894]
          Length = 1105

 Score = 1296 bits (3354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1093 (56%), Positives = 815/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGGEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCL-VNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I ++I +GAFD  +E R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  AE + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|377820269|ref|YP_004976640.1| DNA polymerase III subunit alpha [Burkholderia sp. YI23]
 gi|357935104|gb|AET88663.1| DNA polymerase III, alpha subunit [Burkholderia sp. YI23]
          Length = 1175

 Score = 1295 bits (3352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1093 (57%), Positives = 812/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++DV++AAA D Q ALA+TDL N FG+++FYK A  KG+K
Sbjct: 9    PRFVHLRVHSEFSIADGIVRLDDVVKAAAQDGQGALALTDLGNAFGLVRFYKEARGKGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLV++  GYL LCELLS+A++ N   GRAE+ +EWLE 
Sbjct: 69   PIAGCDVWITNPDDRDKPSRLLLLVRDKQGYLNLCELLSRAWLTNQYRGRAEVMLEWLEG 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q GL+ALSGA  GDIG+A   G    A+  A RW+K+FP+ FYIE+QR  QP     
Sbjct: 129  GLAQ-GLLALSGAQTGDIGMAFAAGNAASAQRHAERWAKLFPNAFYIELQRAGQPGEQGY 187

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ+ + +A+ + LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT++Q F+
Sbjct: 188  IQEAVALAAKLRLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTQDQFFR 247

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ EM  LF DIPSA+ NT+EIA+RCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 248  TQDEMCALFADIPSALANTVEIARRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 307

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY D    + ++  Y  RL FE  TIIKM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 308  EVRLQQLYPDETEREAQRETYYARLDFECGTIIKMGFPGYFLIVADFIMWAKNNGVPVGP 367

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQYVK 
Sbjct: 368  GRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQYVKG 427

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D I+KLIPFKPGK +T+++A+KEE
Sbjct: 428  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEE 487

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  +E+EV QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 488  PTLQERFDSEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGEDGGVV 547

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    +++L ++PL+D  ++ +L
Sbjct: 548  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWNLAQVPLDDPVSFQIL 607

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC RKHG E   
Sbjct: 608  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREIVE 667

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 668  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAQHREIF 727

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA   GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 728  AQGAAVNGLTRAKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 787

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG-KHKKIRYGLGAIKG 840
            SL+MDDT+K+KIL +D   T G+ +LPP+IN S Y F P+ E+DG + K IRYGLGA+KG
Sbjct: 788  SLAMDDTDKVKILFEDC-ATNGMKVLPPDINQSAYRFEPVAEADGTRSKTIRYGLGAVKG 846

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+ G F +LFDF +RID++ +NRR + +LI SGAFD  +  R  L+AS
Sbjct: 847  SGQNAIEEILRAREDGPFVDLFDFCERIDRRVVNRRTVEALIRSGAFDTLHANRAQLLAS 906

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ A++      Q  LF   D    K    YV  P WS K+ L EEK  LGF LS 
Sbjct: 907  VPLAMEAADQAAANAMQAGLFDMGDATLAKH--EYVDEPMWSDKKRLQEEKTALGFYLSG 964

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y+ E+R+F+   + ELK      V+G+I+ ++ + T RGK+LI+ +DD S   EV
Sbjct: 965  HLFDAYKGEVRRFVRQKIGELKEGRDKLVAGVISAMRTQMTQRGKMLIVNLDDGSGQCEV 1024

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ +E NK + KE+ELL+V G+   D F   IR   +   D+  AR  Y +   V  
Sbjct: 1025 TVFNEQFEANKALFKEDELLVVQGQARNDAFTGGIRFTVDTAMDLERARSRYAQSVKVEM 1084

Query: 1081 NRTFNISILKKIL 1093
            N   +   L+++L
Sbjct: 1085 NGNADALRLRRVL 1097


>gi|83720422|ref|YP_441538.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264]
 gi|83654247|gb|ABC38310.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia thailandensis
            E264]
          Length = 1278

 Score = 1295 bits (3351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1174 (54%), Positives = 836/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 108  PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 167

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 168  PIAGCDVWITNRDDRDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 226

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  DGL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FY+E+QR+ QP     
Sbjct: 227  GELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYLELQRYGQPGAEAY 286

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 287  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 346

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 347  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSQEGL 406

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 407  EKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 466

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 467  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 526

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 527  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 586

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 587  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 646

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 647  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFQIL 706

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 707  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 766

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 767  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 826

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 827  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 886

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK-HKKIRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ ++DGK  + IRYGLGAIKG
Sbjct: 887  TLAMDDTDKVKILFDDCV-VNGLAVLPPDINQSHYRFEPVAQADGKPSRTIRYGLGAIKG 945

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GA D  +  R  L+AS
Sbjct: 946  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGALDSLHANRAQLLAS 1005

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 1006 VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKAALGFYLSG 1063

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 1064 HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1123

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1124 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTM 1183

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1184 NGNADAAALRRVLEAHVAKPDDAPPVEAPAPRGGRDGGRRAQAVMPNGLAVRIAY-RNAR 1242

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM     ++V+P D L LA +      +++E
Sbjct: 1243 AQGEMHLGDAWRVKPSDTL-LADLRAAFGGSVVE 1275


>gi|187929482|ref|YP_001899969.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12J]
 gi|309781742|ref|ZP_07676475.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA]
 gi|404396597|ref|ZP_10988391.1| DNA polymerase III, alpha subunit [Ralstonia sp. 5_2_56FAA]
 gi|187726372|gb|ACD27537.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|308919383|gb|EFP65047.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA]
 gi|348613687|gb|EGY63266.1| DNA polymerase III, alpha subunit [Ralstonia sp. 5_2_56FAA]
          Length = 1172

 Score = 1294 bits (3349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1126 (55%), Positives = 818/1126 (72%), Gaps = 34/1126 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYS++DG +R++D ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G DVWITN  E  KP+RLLLLV++  GYL LC+LL++A++ N + GRAEI  EW ++
Sbjct: 64   PIVGADVWITNHDERDKPTRLLLLVRDKQGYLNLCQLLARAWLSNQHRGRAEIAPEWFDE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               ++     GL+ALSGA  GDIG+ + NG + +A   A  WS++FP  FYIE+QR    
Sbjct: 124  PGVENAPLATGLLALSGAMAGDIGMTLANGNDALARKLATNWSRVFPGAFYIELQRAGHA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 IQQ + +AS + LP+VATHP+QF+   +F AHE RTCIAEGE+L+N +R ++FT 
Sbjct: 184  GTEAYIQQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGELLANPRRARRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ FKTQ EM  LF DIPSA+ N+++IA+RCNLKLE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  EQYFKTQDEMCALFADIPSALANSVQIAQRCNLKLELGKPKLPLFPTPDGMSLDDYLVQL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
            QYVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  QYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PL DK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPLTDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  KAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR  F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL++LPP+IN S+Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDARGKNGLTVLPPDINASQYRFAPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N  R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNANRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLF---KNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             L+ASI +A++ AE+     NQ+SLF     DD    +  L  V  P+W+ K++L EEK+
Sbjct: 899  QLLASIGLAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPEL--VDEPAWTTKRKLQEEKQ 956

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL---------------KPTYSCTVSGIITELK 997
             LGF LS H+F     E+R+F    L++L               +   + TV+G+I   +
Sbjct: 957  ALGFYLSGHLFDECRDEVRRFARTTLADLAREVTDKGNGGGYGNRDARNKTVAGVIVGQR 1016

Query: 998  LKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
             + T RGK+LI+++DD S S   EV + N+++E N+ + KE+E+LIV G    D F   +
Sbjct: 1017 TQMTQRGKMLIVMLDDGSASEATEVTVFNEVFEANRALFKEDEVLIVQGSARHDMFTGGV 1076

Query: 1056 RINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNG 1101
            R+ AE + D+  AR  + +   +  N     + L+ +L      +G
Sbjct: 1077 RVTAESVMDMTQARAKFARAIRLSMNGDSTAAKLRDLLSPHVAADG 1122


>gi|167618438|ref|ZP_02387069.1| DNA polymerase III subunit alpha [Burkholderia thailandensis Bt4]
          Length = 1113

 Score = 1293 bits (3346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1093 (56%), Positives = 812/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNRDDRDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  DGL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLAQLYPDGAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK-HKKIRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ ++DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNGLAVLPPDINQSHYRFEPVAQADGKPSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GA D  +  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGALDSLHANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKAALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|257139773|ref|ZP_05588035.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264]
          Length = 1174

 Score = 1293 bits (3345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1174 (54%), Positives = 836/1174 (71%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNRDDRDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  DGL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FY+E+QR+ QP     
Sbjct: 123  GELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYLELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK-HKKIRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ ++DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNGLAVLPPDINQSHYRFEPVAQADGKPSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GA D  +  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGALDSLHANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKAALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1080 NGNADAAALRRVLEAHVAKPDDAPPVEAPAPRGGRDGGRRAQAVMPNGLAVRIAYR-NAR 1138

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM     ++V+P D L LA +      +++E
Sbjct: 1139 AQGEMHLGDAWRVKPSDTL-LADLRAAFGGSVVE 1171


>gi|167580315|ref|ZP_02373189.1| DNA polymerase III subunit alpha [Burkholderia thailandensis TXDOH]
          Length = 1094

 Score = 1290 bits (3338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1093 (56%), Positives = 812/1093 (74%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVKN  GYL LC+LLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNRDDRDKPSRLLLLVKNKRGYLNLCKLLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  DGL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 123  GELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK-HKKIRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++LPP+IN S Y F P+ ++DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNGLAVLPPDINQSHYRFEPVAQADGKPSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GA D  +  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGALDSLHANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKAALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|167569335|ref|ZP_02362209.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis C6786]
          Length = 1174

 Score = 1289 bits (3336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1174 (54%), Positives = 833/1174 (70%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GL+ALSGA  GDIG+A+  G    A   A RW+K FP  FYIE+QR+ QP     
Sbjct: 123  GEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRRQKRFTTDQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D    + ++  Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFQML 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPD R + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRELF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  REGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++L P+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNGLAVLSPDINQSHYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GA D  +  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGALDSLHANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGEPAHQHALVDEPAWDDKRRLQEEKSALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDVNRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1080 NGNADAAALRRVLEAHVAKPDETPAVDAPAPRGGRDGGRRAAPVIPNGLAVRIAYS-NAR 1138

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1171


>gi|238028202|ref|YP_002912433.1| DNA polymerase III subunit alpha [Burkholderia glumae BGR1]
 gi|237877396|gb|ACR29729.1| DNA polymerase III subunit alpha [Burkholderia glumae BGR1]
          Length = 1182

 Score = 1288 bits (3334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1094 (56%), Positives = 820/1094 (74%), Gaps = 7/1094 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A +KGIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KP+RLLLLV++ +GYL LCELLSKA++ N   GRAEI  +WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPARLLLLVRDKSGYLNLCELLSKAWLTNQYRGRAEIDPQWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            ++   GL+ALSGA  GDIGIA+  G N+ A   A+RW+++FP +FYIE+QR+ QP     
Sbjct: 123  SELGGGLLALSGAQQGDIGIALAAGNNESARRHAQRWARVFPGSFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A+ + LP+VATHP+QF++  +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQDAVKLAAELKLPVVATHPLQFMEDEDFTAHEARVCISEGDILANPRRQKRFTTEQRFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM +LF D+PSA+ NT+EIAKRCNL +E GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQAEMAELFADLPSAVLNTVEIAKRCNLTIELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D      ++  Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAERDAQRDTYYQRLDFECGTITKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYAQGDEGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    FI++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPTKADWSLAQVPLDDPASFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F
Sbjct: 663  YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   G+ +LPP+IN S+Y F P+ E+DGK  K IRYGLGA+KG
Sbjct: 783  TLAMDDTDKVKILFDDCVLN-GIKVLPPDINQSEYRFEPVGEADGKRSKTIRYGLGAVKG 841

Query: 841  TGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            +G++ IE I+   R+ G F +LFDF +RID++ +NRR + +LI +GAFD     R  L+A
Sbjct: 842  SGQNAIEEILRARREGGPFKDLFDFCERIDRRMVNRRTVEALIRAGAFDSLTPNRAQLLA 901

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            S+ +A++ AE+      Q  LF     +     L  V  P+W  K+ L EEK  LGF LS
Sbjct: 902  SVPLAMEAAEQAAANAMQAGLFDMGAESPHAHAL--VDEPAWDDKRRLQEEKGALGFYLS 959

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H+F  Y  E+R+F  + L ELK      V+G+I  L+ + T RGK++I ++DD +   E
Sbjct: 960  GHLFDAYRAEVRRFARMKLGELKEGRDKLVAGVIASLRTQMTQRGKMIIALLDDGTGQCE 1019

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVM 1079
            + + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   + 
Sbjct: 1020 ITVFNEQFDANRGLFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRMR 1079

Query: 1080 FNRTFNISILKKIL 1093
             N   +   L+++L
Sbjct: 1080 MNGNADAGALRRVL 1093


>gi|241663600|ref|YP_002981960.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12D]
 gi|240865627|gb|ACS63288.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D]
          Length = 1172

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1126 (55%), Positives = 819/1126 (72%), Gaps = 34/1126 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYS++DG +R++D ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G DVWITN  E  KP+RLLLLV++  GYL LC+LL++A++ N + GRAEI  EW ++
Sbjct: 64   PIVGADVWITNHDERDKPTRLLLLVRDKQGYLNLCQLLARAWLSNQHRGRAEIAPEWFDE 123

Query: 123  NKYQDG-----LIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               ++      L+ALSGA  GDIG+A+ NG   +A   A  WS++FP  FYIE+QR    
Sbjct: 124  PGVENAPLAAGLLALSGAMAGDIGVALANGNEALARKLATHWSRVFPGAFYIELQRAGHA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 IQQ + +AS + LP+VATHP+QF+   +F AHE RTCIAEGE+L+N +R ++FT 
Sbjct: 184  GTEAYIQQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGELLANPRRARRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ FKTQ EM  LF DIPSA+ N ++IA+RCNLKLE GKPKLP+FPTP  ++++D+L+  
Sbjct: 244  EQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPRFPTPDGMSLDDYLVQL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
            QYVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  QYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PL DK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPLTDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  KAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR  F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL+ILPP+IN S+Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRFAPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLF---KNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             L+ASI +A++ AE+     NQ+SLF     DD    +  L  V  P+WS K++L EEK+
Sbjct: 899  QLLASIGLAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPEL--VDEPAWSTKRKLQEEKQ 956

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL---------------KPTYSCTVSGIITELK 997
             LGF LS H+F  Y  E+R+F    L++L               +   + TV+G+I   +
Sbjct: 957  ALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNRDARNKTVAGVIVGQR 1016

Query: 998  LKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
             + T RGK+LI+++DD S S   EV + N+++E N+ + KE+E+LIV G    D F   +
Sbjct: 1017 TQMTQRGKMLIVMLDDGSASEATEVTVFNEVFEANRALFKEDEVLIVQGSARHDMFTGGV 1076

Query: 1056 RINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNG 1101
            R+ AE + D+  AR  + +   +  N     + L+ +L      +G
Sbjct: 1077 RVTAESVMDMTQARAKFARAIRLSMNGDSTAAKLRDLLSPHVAADG 1122


>gi|167562082|ref|ZP_02354998.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis EO147]
          Length = 1105

 Score = 1285 bits (3325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1093 (56%), Positives = 808/1093 (73%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D+++AAA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GL+ALSGA  GDIG+A+  G    A   A RW+K FP  FYIE+QR+ QP     
Sbjct: 123  GEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIELQRYGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+QF+   +F AHE R CI+EG+IL+N +R K+FT +Q F+
Sbjct: 183  IQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRRQKRFTTDQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  SK GL
Sbjct: 243  TQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D    + ++  Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFQML 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPD R + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRELF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  REGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK-IRYGLGAIKG 840
            +L+MDDT+K+KIL  D +   GL++L P+IN S Y F P+ E+DGK  + IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDCV-VNGLAVLSPDINQSHYRFEPVAEADGKRSRTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GA D  +  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGALDSLHANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGEPAHQHALVDEPAWDDKRRLQEEKSALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   E+
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEI 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDVNRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|421897764|ref|ZP_16328131.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
 gi|206588970|emb|CAQ35932.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
          Length = 1174

 Score = 1285 bits (3325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1118 (55%), Positives = 815/1118 (72%), Gaps = 32/1118 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVWITN  E  KPSRLLLLV+N  GYL LC LL++A++ N + GRAEI  EW ++
Sbjct: 64   PVVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHRGRAEIAPEWFDE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +D     GL+ALSGA  GD+G+A+ NG   +A   A  WS++FP  FYIE+QR  Q 
Sbjct: 124  PGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAFYIELQRAGQA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 IQQ + +A+++ LP+VATHP+QF+ + +F AHE R CIAEG++L+N +R ++F+ 
Sbjct: 184  GTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLLANPRRTRRFST 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ FK Q EM  LF DIPSA+ NT++IA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  EQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PLNDK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPLNDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  PAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL +LPP+IN S Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYL-NYVKVPSWSKKQELIEEKKVL 954
             L+ SI +A++ AE+     NQ+SLF      + +E+    +    WS K++L EEK+ L
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPWSTKRKLQEEKQAL 958

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL-----------------KPTYSCTVSGIITELK 997
            GF LS H+F     E+R+F    L++L                 +   + TVSG+I  L+
Sbjct: 959  GFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGNRDARNKTVSGVIVGLR 1018

Query: 998  LKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
             + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F   +
Sbjct: 1019 TQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRRLFKEDEVLIVQGNARHDTFTGGV 1078

Query: 1056 RINAEKIFDINVARILYGKKFSVMFNRTFNISILKKIL 1093
            R+ AE + D+  AR  Y     ++ +   + + L+++L
Sbjct: 1079 RMTAESVMDLTQARSRYADALGLVLSDNASAARLRELL 1116


>gi|113866925|ref|YP_725414.1| DNA polymerase III subunit alpha [Ralstonia eutropha H16]
 gi|113525701|emb|CAJ92046.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16]
          Length = 1173

 Score = 1284 bits (3322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1164 (53%), Positives = 830/1164 (71%), Gaps = 37/1164 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG++R+ D ++AAA D   ALA+TDL+N FG+I++YK A  KG+K
Sbjct: 7    PRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVW+TN  +  KPSRLLLLV++  GYL LC LLS+A++ N + GRAEI   W  +
Sbjct: 67   PVVGADVWLTNAEDRDKPSRLLLLVQDRRGYLNLCMLLSRAWLGNQHRGRAEIDPAWFLE 126

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
                D     GLIALSGA  GDIG+A+ NG  D A   A+ WS +F   FYIE+QR    
Sbjct: 127  PGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWSTVFAQRFYIELQRAGNA 186

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
              +  +QQ + +A+ + LP+VATHP+QF+   ++ AHE R CIAEGE+L+N +R ++FT 
Sbjct: 187  GTDAYVQQAVQLAAELQLPVVATHPVQFMTPDDYTAHEARVCIAEGELLANPRRTRRFTT 246

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA++N +EIA+RCNL LE GKP+LP FPTP  ++++D+L+  
Sbjct: 247  DQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPTPDGMSLDDYLVYM 306

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KRL  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 307  AKDGLEKRLAVLFPDEAVRESKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 366

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 367  VPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQHGRDRVI 426

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y F D I+KLIPFKPGKL+T+  
Sbjct: 427  TYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGIAKLIPFKPGKLVTIEE 486

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP L ER  NEEEVRQL+ELA++VEG+ RNVGMHAGGVLIAP +L +FCPLY Q  
Sbjct: 487  AKKEEPLLTERESNEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGRLTDFCPLYTQGA 546

Query: 536  --EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
              +GM+G++SQYDKDD+E  GL+KFDFLGLTTL+ILD    +I++++    +++ + +PL
Sbjct: 547  QNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWNCSHIPL 606

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            +D   +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC 
Sbjct: 607  DDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA 666

Query: 654  RKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            RKHG E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  
Sbjct: 667  RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPE 726

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM +HR  F+ GA K GLS  +A++IF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+
Sbjct: 727  EMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH 786

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAAN+SL+MDDT+K+KIL +D  K   L++LPP++N S+Y F P        K IR
Sbjct: 787  PAEFMAANMSLAMDDTDKVKILYED-CKLNKLAVLPPDVNASEYRFAPT-----DPKTIR 840

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YGLG IKG+G+  IE I+  R+   FT+LFDF +R+D++ +NRR I +LI +GAFD  N+
Sbjct: 841  YGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEALIRAGAFDSLND 900

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             R  L+AS+ +A++ AE+  +  NQ+SLF    +         +  P WS K+ L EEK+
Sbjct: 901  NRAQLLASVPIAMEAAEQKAESANQVSLFDLMGDAGDAHRPELLDEPRWSPKRTLQEEKQ 960

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGIITELKLKT 1000
             LG+  S H+F  Y  E+R+F    L+ L            +     T++G+I+ ++ + 
Sbjct: 961  ALGYYFSGHLFDAYRDEVRRFNKGTLAALEKEVQGNGGGFGRDVRGKTIAGVISGVRTQM 1020

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
            T RGK++I+ +DD +  VE+ + N+L++ N+++ +E+ELLI +G    D F   +R  AE
Sbjct: 1021 TQRGKMVIVTLDDGTGLVEMTVFNELFDANRHMFREDELLIATGNARHDTFTGGVRFTAE 1080

Query: 1061 KIFDINVARILYGKKFSVMFNRTFNISILKKILL----RFKCKNGLPFVLYYCINKSIKY 1116
             + D+  AR+ +     +  N   +  +L+++L+    R     GLP  ++Y  + +   
Sbjct: 1081 SVMDLVAARVKFASAVRLSMNGNSSTGMLRELLMPHLARASGGQGLPVRIHYQ-SGAASC 1139

Query: 1117 EMKFPLNYKVQPIDD----LKLAL 1136
            E     ++KV P D+    L+LAL
Sbjct: 1140 EAMLGADWKVVPSDEALTALRLAL 1163


>gi|17546924|ref|NP_520326.1| DNA polymerase III subunit alpha [Ralstonia solanacearum GMI1000]
 gi|17429224|emb|CAD15912.1| probable dna polymerase III (alpha chain) protein [Ralstonia
            solanacearum GMI1000]
          Length = 1173

 Score = 1284 bits (3322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1161 (53%), Positives = 832/1161 (71%), Gaps = 40/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYS++DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW--- 119
            PI+G DVWITN  E  KPSRLLLLV+N  GYL LC LL++A++ N + GRAE+  EW   
Sbjct: 64   PIVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCMLLARAWLSNQHRGRAEVAPEWFGE 123

Query: 120  --LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
              +E+     GL+ALSGA  GDIG+A+ NG   +A   A +WS++FP +FYIE+QR    
Sbjct: 124  PGVEEAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPASFYIELQRAGNA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 +QQ + +A+++ LP+VATHP+QF+   +F AHE R CIAEG++L+N +R ++FT 
Sbjct: 184  GTEAYVQQAVKLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGDLLANPRRTRRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA+ NT +IA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  DQYFKTQDEMCALFADIPSALANTAQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKDGLEKRMAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+T+  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTIEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PL DK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRTLDPSRADWNCSHIPLTDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  AAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL++LPP+IN S+Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDARGKNGLAVLPPDINASQYRFTPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N  R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNANRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLF----KNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
             L+ SI +A++ AE+     NQ+SLF     +D   +  E L+  + P WS K++L EEK
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLD--EAP-WSTKRKLQEEK 955

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSEL----------------KPTYSCTVSGIITE 995
            + LGF LS H+F     E+R+F    L++L                +   + TV+G+I  
Sbjct: 956  QALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDARNKTVAGVIVG 1015

Query: 996  LKLKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
            L+ + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F  
Sbjct: 1016 LRTQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRALFKEDEVLIVQGNARHDTFTG 1075

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN--GLPFVLYYCIN 1111
             +R+ AE + D+  AR  Y     + F    + + L+++L  +      G+   + Y  N
Sbjct: 1076 GVRMTAEAVLDLTQARARYADAIGLTFRDNASAARLRELLTPYLAAQVPGVRVRISYAAN 1135

Query: 1112 KSIKYEMKFPLNYKVQPIDDL 1132
             + + E      ++V P D++
Sbjct: 1136 GA-RCEAVLGEQWQVTPSDEV 1155


>gi|386332895|ref|YP_006029064.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            Po82]
 gi|334195343|gb|AEG68528.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            Po82]
          Length = 1174

 Score = 1284 bits (3322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1173 (53%), Positives = 836/1173 (71%), Gaps = 39/1173 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVWITN  E  KP RLLLLV+N  GYL LC LL++A++ N + GRAEI  EW ++
Sbjct: 64   PVVGADVWITNHDERDKPGRLLLLVRNKQGYLNLCTLLARAWLSNQHRGRAEIAPEWFDE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +D     GL+ALSGA  GD+G+A+ NG   +A   A  WS++FP  FYIE+QR  Q 
Sbjct: 124  PGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAFYIELQRAGQA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 IQQ + +A+++ LP+VATHP+QF+ + +F AHE R CIAEG++L+N +R ++F+ 
Sbjct: 184  GTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLLANPRRTRRFST 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ FK Q EM  LF DIPSA+ NT++IA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  EQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PLNDK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSRADWNCSHIPLNDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  PAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL +LPP+IN S Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYL-NYVKVPSWSKKQELIEEKKVL 954
             L+ SI +A++ AE+     NQ+SLF      + +E+    +    WS K++L EEK+ L
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPWSTKRKLQEEKQAL 958

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL-----------------KPTYSCTVSGIITELK 997
            GF LS H+F     E+R+F    L++L                 +   + TVSG+I  L+
Sbjct: 959  GFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGSRDARNKTVSGVIVGLR 1018

Query: 998  LKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
             + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F   +
Sbjct: 1019 TQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRGLFKEDEVLIVQGNARHDTFTGGV 1078

Query: 1056 RINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC--KNGLPFVLYYCINKS 1113
            R+ AE + D+  AR  Y +   ++     + + L+++L  +     +G+   + Y  N +
Sbjct: 1079 RMTAEAVMDLTQARSRYAEALGLVLRDDASAARLRELLTPYLATQASGVRVHISYAANGA 1138

Query: 1114 IKYEMKFPLNYKVQPIDDL----KLALINLGLY 1142
               +      ++V P D++    + AL N  +Y
Sbjct: 1139 C-CKAVLGEQWQVTPSDEVLASFRSALSNENVY 1170


>gi|344171935|emb|CCA84561.1| DNA polymerase III, alpha subunit [Ralstonia syzygii R24]
          Length = 1172

 Score = 1282 bits (3318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1171 (53%), Positives = 836/1171 (71%), Gaps = 37/1171 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVWITN  E  KP RLLLLV+N  GYL LC LL++A++ N + GRAEI  EW  +
Sbjct: 64   PVVGADVWITNHDERDKPGRLLLLVRNKQGYLNLCMLLARAWLSNQHRGRAEIAPEWFGE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +D     GL+ALSGA  GDIG+A+ NG   +A   A +WS +FP+ FYIE+QR  Q 
Sbjct: 124  PGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPEAFYIELQRAGQA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 +Q+ + +A++++LP+VATHP+QF+   +F AHE R CIAEG++L+N +R ++FT 
Sbjct: 184  GTEAYVQRAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDLLANPRRARRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA+ N ++IA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  DQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL++R+  L+ DP + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKQGLEQRMEVLFPDPAVRETKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PL DK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSRADWNCSHIPLTDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  AAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR+ F+ GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRELFRGGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL +LPP+IN S+Y F P        K +RYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFTPT-----DAKTLRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYL-NYVKVPSWSKKQELIEEKKVL 954
             L+ SI +A++ AE+     NQ+SLF     ++ +E+    +    W+ K++L EEK+ L
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMSGDDAEEHRPELLDEAPWTTKRKLQEEKQAL 958

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL---------------KPTYSCTVSGIITELKLK 999
            GF LS H+F     E+R+F    L++L               +   + TV+G+I  L+ +
Sbjct: 959  GFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGGGYGSRDARNKTVAGVIVGLRTQ 1018

Query: 1000 TTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057
             T RGK+++ ++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F   +R+
Sbjct: 1019 MTQRGKMIVAMLDDGSQSEATEVTVFNELFDANRALFKEDEVLIVQGNARHDTFTGGVRM 1078

Query: 1058 NAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN--GLPFVLYYCINKSIK 1115
             AE + D+  AR  Y     ++F    + + L+++L         G+   + Y  N + +
Sbjct: 1079 TAEAVMDLTQARSRYADALGLVFRDNASAARLRELLTPHLAAQAPGVRVHISYAANGA-R 1137

Query: 1116 YEMKFPLNYKVQPIDDL----KLALINLGLY 1142
             E      ++V P D++    + AL N  +Y
Sbjct: 1138 CEAVLGEQWQVTPSDEVLASFRSALSNENVY 1168


>gi|83746496|ref|ZP_00943547.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|207743808|ref|YP_002260200.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
 gi|83726827|gb|EAP73954.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|206595208|emb|CAQ62135.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
          Length = 1176

 Score = 1282 bits (3318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1120 (55%), Positives = 814/1120 (72%), Gaps = 34/1120 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVWITN  E  KPSRLLLLV+N  GYL LC LL++A++ N + GRAEI  EW ++
Sbjct: 64   PVVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHRGRAEIAPEWFDE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +D     GL+ALSGA  GD+G+A+ NG   +A   A  WS++FP  FYIE+QR  Q 
Sbjct: 124  PGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAFYIELQRAGQA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 IQQ + +A+++ LP+VATHP+QF+ + +F AHE R CIAEG++L+N +R ++F+ 
Sbjct: 184  GTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLLANPRRTRRFST 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ FK Q EM  LF DIPSA+ NT++IA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  EQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PLNDK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPLNDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  PAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL +LPP+IN S Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYL-NYVKVPSWSKKQELIEEKKVL 954
             L+ SI +A++ AE+     NQ+SLF      + +E+    +    WS K++L EEK+ L
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPWSTKRKLQEEKQAL 958

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL-------------------KPTYSCTVSGIITE 995
            GF LS H+F     E+R+F    L++L                   +   + TVSG+I  
Sbjct: 959  GFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGNRDARNKTVSGVIVG 1018

Query: 996  LKLKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
            L+ + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F  
Sbjct: 1019 LRTQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRGLFKEDEVLIVQGNARHDTFTG 1078

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKIL 1093
             +R+ AE + D+  AR  Y +   ++     +   L+++L
Sbjct: 1079 GVRMTAESVMDLTQARSRYAEALGLVLRDDASAVRLRELL 1118


>gi|424902640|ref|ZP_18326156.1| DNA polymerase III subunit alpha [Burkholderia thailandensis MSMB43]
 gi|390933015|gb|EIP90415.1| DNA polymerase III subunit alpha [Burkholderia thailandensis MSMB43]
          Length = 1174

 Score = 1281 bits (3316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1174 (53%), Positives = 832/1174 (70%), Gaps = 35/1174 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A   GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDANWLEG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +    GL+ALSGA  GDIG+A+  G    A   A+RWS++FP  FYIE+QR  QP     
Sbjct: 124  D-LAAGLLALSGAQQGDIGLALAAGNEAAARRHAQRWSQVFPGGFYIELQRHGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELMLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M+ LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQDDMVALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAEREAQRDKYSQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPD R + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAQHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK-KIRYGLGAIKG 840
            +L+MDDT+K+KIL  D     G+++LPP+IN S Y F P+ ++DGK    IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDC-DVNGIAVLPPDINQSHYRFEPVAQADGKRSCTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GA D  +  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRIVNRRTIEALIRAGALDSLHANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKSALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDVNRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKILLRFKCK---------------------------NGLPFVLYYCINKS 1113
            N   + + L+++L     K                           NGL   + Y  N  
Sbjct: 1080 NGNADAAALRRVLEAHVAKADDTPPAEAPAPRGGREGGRRAQVVIPNGLVVRIAYS-NAR 1138

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
             + EM+    ++V+P D L LA +      +++E
Sbjct: 1139 AQGEMRLGDAWRVKPSDAL-LADLRAAFGGSVVE 1171


>gi|300690877|ref|YP_003751872.1| DNA polymerase III subunit alpha [Ralstonia solanacearum PSI07]
 gi|299077937|emb|CBJ50577.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
          Length = 1174

 Score = 1281 bits (3316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1173 (53%), Positives = 835/1173 (71%), Gaps = 39/1173 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVWITN  E  KP RLLLLV+N  GYL LC LL++A++ N + GRAEI  EW  +
Sbjct: 64   PVVGADVWITNHDERDKPGRLLLLVRNKQGYLNLCMLLARAWLSNQHRGRAEIAPEWFGE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +D     GL+ALSGA  GDIG+A+ NG   +A   A +WS +FP+ FYIE+QR  Q 
Sbjct: 124  PGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPEAFYIELQRAGQA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 +Q+ + +A++++LP+VATHP+QF+   +F AHE R CIAEG++L+N +R ++FT 
Sbjct: 184  GTEAYVQRAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDLLANPRRARRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA+ N ++IA+RCNL LE GKPKLP FPTP  ++++D+L   
Sbjct: 244  DQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLAHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL++R+  L+ DP + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKQGLEQRMEVLFPDPAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PL DK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSRADWNCSHIPLTDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  AAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR  F+ GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRALFRAGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL +LPP+IN S+Y F P        K +RYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFTPT-----DAKTLRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYL-NYVKVPSWSKKQELIEEKKVL 954
             L+ SI +A++ AE+     NQ+SLF     ++ +E+    +    W+ K++L EEK+ L
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMSGDDAEEHRPELLDEAPWTTKRKLQEEKQAL 958

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL-----------------KPTYSCTVSGIITELK 997
            GF LS H+F     E+R+F    L++L                 +   + TV+G+I  L+
Sbjct: 959  GFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGSRDARNKTVAGVIVGLR 1018

Query: 998  LKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
             + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F   +
Sbjct: 1019 TQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRALFKEDEVLIVQGNARHDTFTGGV 1078

Query: 1056 RINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN--GLPFVLYYCINKS 1113
            R+ AE + D+  AR  Y     ++F    + + L+++L         G+   + Y  N +
Sbjct: 1079 RMTAEAVMDLTQARSRYADALGLVFRDNASAARLRELLTPHLAAQTPGVRVHISYAANGA 1138

Query: 1114 IKYEMKFPLNYKVQPIDDL----KLALINLGLY 1142
             + E      ++V P DD+    + AL N  +Y
Sbjct: 1139 -RCEAVLGEQWQVTPSDDVLASFRSALSNENVY 1170


>gi|344167282|emb|CCA79487.1| DNA polymerase III, alpha subunit [blood disease bacterium R229]
          Length = 1176

 Score = 1281 bits (3315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1175 (53%), Positives = 835/1175 (71%), Gaps = 41/1175 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVWITN  E  KP RLLLLV+N  GYL LC LL++A++ N + GRAEI  EW  +
Sbjct: 64   PVVGADVWITNHDERDKPGRLLLLVRNKQGYLNLCMLLARAWLSNQHRGRAEIAPEWFGE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +D     GL+ALSGA  GDIG+A+ NG   +A   A +WS +FP+ FYIE+QR  Q 
Sbjct: 124  PGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPEAFYIELQRAGQA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 +Q+ + +A++++LP+VATHP+QF+   +F AHE R CIAEG++L+N +R ++FT 
Sbjct: 184  GTEAYVQRAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDLLANPRRARRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA+ N ++IA+RCNL LE GKPKLP FPTP  ++++D+L   
Sbjct: 244  DQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLAHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL++R+  L+ DP + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKQGLEQRMEVLFPDPAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PL DK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSRADWNCSHIPLTDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  AAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR  F+ GA K GL+  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRALFRAGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL +LPP+IN S+Y F P        K +RYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFTPT-----DAKTLRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYL-NYVKVPSWSKKQELIEEKKVL 954
             L+ SI +A++ AE+     NQ+SLF     ++ +E+    +    W+ K++L EEK+ L
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMSGDDAEEHRPELLDEAPWTTKRKLQEEKQAL 958

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL-------------------KPTYSCTVSGIITE 995
            GF LS H+F     E+R+F    L++L                   +   + TV+G+I  
Sbjct: 959  GFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGSRDARNKTVAGVIVG 1018

Query: 996  LKLKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
            L+ + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F  
Sbjct: 1019 LRTQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRALFKEDEVLIVQGNARHDTFTG 1078

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN--GLPFVLYYCIN 1111
             +R+ AE + D+  AR  Y     ++F    + + L+++L         G+   + Y  N
Sbjct: 1079 GVRMTAEAVMDLTQARSRYADALGLVFRDNASAARLRELLTPHLAAQTPGVRVHISYAAN 1138

Query: 1112 KSIKYEMKFPLNYKVQPIDDL----KLALINLGLY 1142
             + + E      ++V P DD+    + AL N  +Y
Sbjct: 1139 GA-RCEAVLGEQWQVTPSDDVLASFRSALSNENVY 1172


>gi|299066194|emb|CBJ37378.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15]
          Length = 1173

 Score = 1281 bits (3314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1161 (54%), Positives = 829/1161 (71%), Gaps = 40/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYS++DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW--- 119
            P++G DVWITN  E  KPSRLLLLV+N  GYL LC LL++A++ N + GRAEI  EW   
Sbjct: 64   PVVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCMLLARAWLSNQHRGRAEIAPEWFGE 123

Query: 120  --LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
              +E      GL+ALSGA  GDIG+A+ NG   +A   A +WS++FP +FYIE+QR    
Sbjct: 124  PGVEAAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPASFYIELQRAGNA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 +QQ + +A+++ LP+VATHP+QF+   EF AHE R CIAEG++L+N +R ++FT 
Sbjct: 184  GTEAYVQQAVKLAASMQLPVVATHPVQFMTPDEFTAHEARVCIAEGDLLANPRRTRRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA+ NT++IA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  DQYFKTQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLVQL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKEGLEKRMEVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PL DK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPLTDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  AAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA     L++LPP+IN S+Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDARGKNALAVLPPDINASQYRFTPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N  R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNANRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLF----KNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
             L+ SI +A++ AE+     NQ+SLF     +D   +  E L+  + P WS K++L EEK
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLD--EAP-WSTKRKLQEEK 955

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSEL----------------KPTYSCTVSGIITE 995
            + LGF LS H+F     E+R+F    L++L                +   + TV+G+I  
Sbjct: 956  QALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDARNKTVAGVIVG 1015

Query: 996  LKLKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
            L+ + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F  
Sbjct: 1016 LRTQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRALFKEDEVLIVQGNARHDTFTG 1075

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN--GLPFVLYYCIN 1111
             +R+ AE + D+  AR  Y     + F    +   L+++L         G+   + Y  N
Sbjct: 1076 GVRMTAEAVLDLTQARARYADAIGLTFRDNASAVRLRELLTPHLATQVPGVRVRISYAAN 1135

Query: 1112 KSIKYEMKFPLNYKVQPIDDL 1132
             + + E      ++V P D++
Sbjct: 1136 GA-RCEAVLGEQWQVTPSDEV 1155


>gi|421891303|ref|ZP_16322112.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum K60-1]
 gi|378963346|emb|CCF98860.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum K60-1]
          Length = 1176

 Score = 1281 bits (3314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1120 (55%), Positives = 814/1120 (72%), Gaps = 34/1120 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVWITN  E  KPSRLLLLV+N  GYL LC LL++A++ N + GRAEI  EW ++
Sbjct: 64   PVVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHRGRAEIAPEWFDE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +D     GL+ALSGA  GD+G+A+ NG   +A   A  WS++FP  FYIE+QR  Q 
Sbjct: 124  PGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAFYIELQRAGQA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 IQQ + +A+++ LP+VATHP+QF+ + +F AHE R CIAEG++L+N +R ++F+ 
Sbjct: 184  GTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLLANPRRTRRFST 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ FK Q EM  LF DIPSA+ NT++IA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  EQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKDGLEKRMEVLFPDVAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PLNDK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPLNDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  PAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL +LPP+IN S Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYL-NYVKVPSWSKKQELIEEKKVL 954
             L+ SI +A++ AE+     NQ+SLF      + +E+    +    W+ K++L EEK+ L
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDETPWTTKRKLQEEKQAL 958

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL-------------------KPTYSCTVSGIITE 995
            GF LS H+F     E+R+F    L++L                   +   + TVSG+I  
Sbjct: 959  GFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGSRDARNKTVSGVIVG 1018

Query: 996  LKLKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
            L+ + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F  
Sbjct: 1019 LRTQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRGLFKEDEVLIVQGNARHDTFTG 1078

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKIL 1093
             +R+ AE + D+  AR  Y +   ++     +   L+++L
Sbjct: 1079 GVRMTAESVMDLTQARSRYAEALGLVLRDNASAVRLRELL 1118


>gi|300703510|ref|YP_003745112.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957]
 gi|299071173|emb|CBJ42487.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957]
          Length = 1176

 Score = 1280 bits (3311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1120 (55%), Positives = 813/1120 (72%), Gaps = 34/1120 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG +R+++ ++AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVWITN  E  KPSRLLLLV+N  GYL LC LL++A++ N + GRAEI  EW ++
Sbjct: 64   PVVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHRGRAEIAPEWFDE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +D     GL+ALSGA  GD+G+A+ NG   +A   A  WS++FP  FYIE+QR  Q 
Sbjct: 124  PGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAFYIELQRAGQA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 IQQ + +A+++ LP+VATHP+QF+ + +F AHE R CIAEG++L+N +R ++F+ 
Sbjct: 184  GTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLLANPRRTRRFST 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ FK Q EM  LF DIPSA+ NT++IA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 244  EQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+TL  
Sbjct: 424  HYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A KEEP LAER  NEEEV+QL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G
Sbjct: 484  AKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 538  M-TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I+ ++    +++ + +PL DK
Sbjct: 544  EDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPLTDK 603

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RKH
Sbjct: 604  PAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARKH 663

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 664  GREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            EHR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + 
Sbjct: 724  EHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAE 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAAN+SL+MDDT+K+KIL  DA    GL +LPP+IN S Y F P        K IRYGL
Sbjct: 784  FMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTPT-----DAKTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            G +KG+G+  IE I+  R+ G F +LFDF +R+D++ +NRR I +L+ +GAFD  N+ R 
Sbjct: 839  GGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRA 898

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYL-NYVKVPSWSKKQELIEEKKVL 954
             L+ SI +A++ AE+     NQ+SLF      + +E+    +    W+ K++L EEK+ L
Sbjct: 899  QLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPWTTKRKLQEEKQAL 958

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL-------------------KPTYSCTVSGIITE 995
            GF LS H+F     E+R+F    L++L                   +   + TVSG+I  
Sbjct: 959  GFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGSRDARNKTVSGVIVG 1018

Query: 996  LKLKTTYRGKILIIVIDDNSNS--VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
            L+ + T RGK++++++DD S S   EV + N+L++ N+ + KE+E+LIV G    D F  
Sbjct: 1019 LRTQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRGLFKEDEVLIVQGNARHDTFTG 1078

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKIL 1093
             +R+ AE + D+  AR  Y +   ++     +   L+++L
Sbjct: 1079 GVRMTAESVMDLTQARSRYAEALGLVLRDNASAVRLRELL 1118


>gi|167835967|ref|ZP_02462850.1| DNA polymerase III subunit alpha [Burkholderia thailandensis MSMB43]
          Length = 1095

 Score = 1278 bits (3308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1093 (56%), Positives = 807/1093 (73%), Gaps = 6/1093 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A   GIK
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 64   PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDANWLEG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +    GL+ALSGA  GDIG+A+  G    A   A+RWS++FP  FYIE+QR  QP     
Sbjct: 124  D-LAAGLLALSGAQQGDIGLALAAGNEAAARRHAQRWSQVFPGGFYIELQRHGQPGAEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 183  IQQAVTIAAELMLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M+ LF D+PSA+ NT+EIAKRCNL LE GKPKLP FPTP  ++++D+L+  S+ GL
Sbjct: 243  TQDDMVALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSQEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLVQLYPDEAEREAQRDKYSQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 423  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 483  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGGVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    ++SL ++PL+D  ++ +L
Sbjct: 543  SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPTSFQIL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E   
Sbjct: 603  KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVE 662

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPD R + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 663  YPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAQHREIF 722

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K GL++ K++EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ + FMAAN+
Sbjct: 723  AEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANM 782

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK-KIRYGLGAIKG 840
            +L+MDDT+K+KIL  D     G+++LPP+IN S Y F P+ ++DGK    IRYGLGAIKG
Sbjct: 783  TLAMDDTDKVKILFDDC-DVNGIAVLPPDINQSHYRFEPVAQADGKRSCTIRYGLGAIKG 841

Query: 841  TGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            +G++ IE I+  R+   F +LFDF +RID++ +NRR I +LI +GA D  +  R  L+AS
Sbjct: 842  SGQNAIEEILRAREEKPFADLFDFCERIDRRIVNRRTIEALIRAGALDSLHANRAQLLAS 901

Query: 901  IDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
            + +A++ AE+      Q  LF  D           V  P+W  K+ L EEK  LGF LS 
Sbjct: 902  VPLAMEAAEQAAANALQAGLF--DIGGVPAHQHALVDEPAWDDKRRLQEEKSALGFYLSG 959

Query: 961  HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV 1020
            H+F  Y  E+R+F+   L ELK      V+G+I  L+ + T RGK++I ++DD +   EV
Sbjct: 960  HLFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEV 1019

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
             + N+ ++ N+ + KE+ELLIV G+   D F   IR  A+ + D+  AR  Y +   +  
Sbjct: 1020 TVFNEQFDVNRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTM 1079

Query: 1081 NRTFNISILKKIL 1093
            N   + + L+++L
Sbjct: 1080 NGNADAAALRRVL 1092


>gi|430806148|ref|ZP_19433263.1| DNA polymerase III subunit alpha [Cupriavidus sp. HMR-1]
 gi|429501681|gb|ELA00012.1| DNA polymerase III subunit alpha [Cupriavidus sp. HMR-1]
          Length = 1167

 Score = 1264 bits (3272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1153 (52%), Positives = 828/1153 (71%), Gaps = 31/1153 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG++R++D ++AAA D   ALA+TDL+N FG+I+FYK A   G+K
Sbjct: 4    PRFVHLRLHSEYSIVDGIVRLDDAVKAAARDGMGALALTDLANAFGLIRFYKEARGGGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVW+TN  +  KP+R+LLLV++  GYL LC LLS+A++ N + GRAE    WLE+
Sbjct: 64   PVVGADVWLTNAEDRDKPARMLLLVQDRIGYLNLCTLLSRAWLGNQHRGRAEFEPGWLEE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               +      GLIALSGA  GD+G A+ NG  + A   A  W+++FP  +YIE+QR  QP
Sbjct: 124  PGEEGLPLATGLIALSGAMGGDVGQALANGNVEAARRAAEHWARVFPQRYYIELQRAGQP 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
              +  + Q + +A+++ LP+VATHP+QF+   +F AHE R CIAEGE+L+N +R +KFT 
Sbjct: 184  GTDAYVPQAVQLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGELLANPRRTRKFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA+QN++EIAKRCNL LE GKP+LP FPTP  ++++D+L+  
Sbjct: 244  DQYFKTQDEMTALFADIPSALQNSVEIAKRCNLTLELGKPRLPLFPTPDGMSLDDYLVFM 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+L L+ D    + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKEGLEKRMLVLFPDEAERESKRAEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y F D ++KLIPFKPGKL+TL  
Sbjct: 424  TYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGVAKLIPFKPGKLVTLEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP LAER + EEEVRQL+ELA++VEG+ RNVGMHAGGVLIAP +L +FCPLY Q  
Sbjct: 484  AKKEEPALAERERTEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGRLTDFCPLYTQGT 543

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
            +GM+G++SQYDKDD+E  GL+KFDFLGLTTL+ILD    +I++++    +++ +++PL+D
Sbjct: 544  DGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWNCSQIPLDD 603

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RK
Sbjct: 604  SPAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARK 663

Query: 656  HG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
            HG E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM
Sbjct: 664  HGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEM 723

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
             +HR  F+ GA K GL+  +A++IF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ +
Sbjct: 724  AKHRDMFREGADKNGLTAQQADDIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPA 783

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAAN+SL+MDDT+K+KIL +D  +   + +LPP++N S+Y F P        K IRYG
Sbjct: 784  EFMAANMSLAMDDTDKVKILYED-CRLNKIEVLPPDVNASEYRFAPT-----DAKTIRYG 837

Query: 835  LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            LG IKG+G+  IE I+  R+   F +LFDF +R+D++ +NRR I +LI +GAFD  N+ R
Sbjct: 838  LGGIKGSGQGAIEDILRAREERPFDDLFDFCERVDRRQVNRRTIEALIRAGAFDSLNDNR 897

Query: 895  YMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
              L+AS+ +A++ A++  +  NQ+SLF   D+         V  P W+ K+ L EEK+ L
Sbjct: 898  AQLLASVSIAMEAADQKAESANQVSLFDLMDDAGASHRPELVDEPRWTPKRTLQEEKQAL 957

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGIITELKLKTTY 1002
            G+  S H+F     E+R+F+   L+ L            +      ++G+IT ++ + T 
Sbjct: 958  GYYFSGHLFDASRDEVRRFVKGTLAALEKEVQGNGGGYGRDVRGKVIAGVITGIRTQMTQ 1017

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            RGK++I+++DD +  +E+ + N+LY+ N+++ +E+ELLI  G    D F   +R  A+ +
Sbjct: 1018 RGKLIIVLLDDGTAQIEMTVFNELYDANRHMFREDELLIAQGNARHDTFTGGVRFTADSV 1077

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKCK----NGLPFVLYYCINKSIKYEM 1118
             D+  AR  Y     + FN   +   L+++L  +        G+P  + Y +NK+ + E 
Sbjct: 1078 QDLVAARARYADAVCLGFNGNASTERLRELLTPYLAHVSQTPGVPVRISY-VNKTAQCEA 1136

Query: 1119 KFPLNYKVQPIDD 1131
                 +++ P ++
Sbjct: 1137 MLGDQWQITPSEE 1149


>gi|339324998|ref|YP_004684691.1| DNA polymerase III subunit alpha [Cupriavidus necator N-1]
 gi|338165155|gb|AEI76210.1| DNA polymerase III subunit alpha [Cupriavidus necator N-1]
          Length = 1173

 Score = 1264 bits (3270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1164 (53%), Positives = 828/1164 (71%), Gaps = 37/1164 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG++R+ D ++AAA D   ALA+TDL+N FG+I++YK A   G+K
Sbjct: 7    PRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRYYKEARGGGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVW+TN  +  KPSRLLLLV++  GYL LC LLS+A++ N + GRAEI   W  +
Sbjct: 67   PVVGADVWLTNAEDRDKPSRLLLLVQDRRGYLNLCMLLSRAWLGNQHRGRAEIDPAWFLE 126

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
                D     GLIALSGA  GDIG+A+ NG  D A   A+ WS +F   FYIE+QR    
Sbjct: 127  PGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWSTVFAQRFYIELQRAGNA 186

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
              +  +QQ + +A+ + LP+VATHP+QF+   ++ AHE R CIAEGE+L+N +R ++FT 
Sbjct: 187  GTDAYVQQAVQLAAELQLPVVATHPVQFMTPDDYTAHEARVCIAEGELLANPRRTRRFTT 246

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA++N +EIA+RCNL LE GKP+LP FPTP  ++++D+L+  
Sbjct: 247  DQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPTPDGMSLDDYLVFM 306

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KRL  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 307  AKDGLEKRLAVLFPDEAVRESKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 366

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 367  VPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQHGRDRVI 426

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y F D I+KLIPFKPGKL+T+  
Sbjct: 427  TYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGIAKLIPFKPGKLVTIEE 486

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP L ER  NEEEVRQL+ELA++VEG+ RNVGMHAGGVLIAP +L +FCPLY Q  
Sbjct: 487  AKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGRLTDFCPLYTQGA 546

Query: 536  --EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
              +GM+G++SQYDKDD+E  GL+KFDFLGLTTL+ILD    +I++++    +++ + +PL
Sbjct: 547  QNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWNCSHIPL 606

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            +D   +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC 
Sbjct: 607  DDSPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA 666

Query: 654  RKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            RKHG E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  
Sbjct: 667  RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPE 726

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM +HR  F+ GA K GLS  +A++IF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+
Sbjct: 727  EMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH 786

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAAN+SL+MDDT+K+KIL +D  K   L++LPP++N S+Y F P        K IR
Sbjct: 787  PAEFMAANMSLAMDDTDKVKILYED-CKLNKLAVLPPDVNASEYRFAPT-----DSKTIR 840

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YGLG IKG+G+  IE I+  R+   FT+LFDF +R+D++ +NRR I +LI +GAFD  N+
Sbjct: 841  YGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEALIRAGAFDSLND 900

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             R  L+AS+ +A++ AE+  +  NQ+SLF    +         +  P WS K+ L EEK+
Sbjct: 901  NRAQLLASVPIAMEAAEQKAESANQVSLFDLMGDAGEAHRPELLDEPRWSPKRALQEEKQ 960

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGIITELKLKT 1000
             LG+  S H+F  Y  E+R+F    L+ L            +      ++G+I+ ++ + 
Sbjct: 961  ALGYYFSGHLFDAYRDEVRRFNKGTLAALEKEVQGNGGGFGRDVRGKAIAGVISGVRTQM 1020

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
            T RGK+LI+ +DD +  VE+ + N+L++ N+++ +E+ELLI +G    D F   +R  AE
Sbjct: 1021 TQRGKMLIVTLDDGTGLVEMTVFNELFDANRHMFREDELLIATGNARHDTFTGGVRFTAE 1080

Query: 1061 KIFDINVARILYGKKFSVMFNRTFNISILKKILL----RFKCKNGLPFVLYYCINKSIKY 1116
             + D+  AR+ +     +  N   +  +L+++L+    R     GLP  ++Y  + +   
Sbjct: 1081 SVMDLVAARLKFASAVRLAMNGNSSTGMLRELLMPHLARASGGQGLPVRIHYQ-SAAASC 1139

Query: 1117 EMKFPLNYKVQPIDD----LKLAL 1136
            E     ++KV P D+    L+LAL
Sbjct: 1140 EAMLGADWKVVPSDEALTALRLAL 1163


>gi|94309699|ref|YP_582909.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34]
 gi|93353551|gb|ABF07640.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34]
          Length = 1176

 Score = 1262 bits (3265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1158 (52%), Positives = 828/1158 (71%), Gaps = 31/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG++R++D ++AAA D   ALA+TDL+N FG+I+FYK A   G+K
Sbjct: 13   PRFVHLRLHSEYSIVDGIVRLDDAVKAAARDGMGALALTDLANAFGLIRFYKEARGGGVK 72

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL-- 120
            P++G DVW+TN  +  KP+R+LLLV++  GYL LC LLS+A++ N + GRAE    WL  
Sbjct: 73   PVVGADVWLTNAEDRDKPARMLLLVQDRIGYLNLCTLLSRAWLGNQHRGRAEFEPGWLGE 132

Query: 121  ---EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               E      GLIALSGA  GD+G A+ NG  + A   A  W+++FP  +YIE+QR  QP
Sbjct: 133  PGEEGLPLATGLIALSGAMGGDVGQALANGNVEAARRAAEHWARVFPQRYYIELQRAGQP 192

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
              +  + Q + +A+++ LP+VATHP+QF+   +F AHE R CIAEGE+L+N +R +KFT 
Sbjct: 193  GTDAYVPQAVQLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGELLANPRRTRKFTT 252

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA+QN++EIAKRCNL LE GKP+LP FPTP  ++++D+L+  
Sbjct: 253  DQYFKTQDEMTALFADIPSALQNSVEIAKRCNLTLELGKPRLPLFPTPDGMSLDDYLVFM 312

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+L L+ D    + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 313  AKEGLEKRMLVLFPDEAERESKRAEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 372

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 373  VPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQHGRDRVI 432

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y F D ++KLIPFKPGKL+TL  
Sbjct: 433  TYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGVAKLIPFKPGKLVTLEE 492

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP LAER + EEEVRQL+ELA++VEG+ RNVGMHAGGVLIAP +L +FCPLY Q  
Sbjct: 493  AKKEEPALAERERTEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGRLTDFCPLYTQGT 552

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
            +GM+G++SQYDKDD+E  GL+KFDFLGLTTL+ILD    +I++++    +++ +++PL+D
Sbjct: 553  DGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWNCSQIPLDD 612

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC RK
Sbjct: 613  SPAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCARK 672

Query: 656  HG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
            HG E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM
Sbjct: 673  HGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEM 732

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
             +HR  F+ GA K GL+  +A++IF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+ +
Sbjct: 733  AKHRDMFREGADKNGLTAQQADDIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPA 792

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAAN+SL+MDDT+K+KIL +D  +   + +LPP++N S+Y F P        K IRYG
Sbjct: 793  EFMAANMSLAMDDTDKVKILYED-CRLNKIEVLPPDVNASEYRFAPT-----DAKTIRYG 846

Query: 835  LGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            LG IKG+G+  IE I+  R+   F +LFDF +R+D++ +NRR I +LI +GAFD  N+ R
Sbjct: 847  LGGIKGSGQGAIEDILRAREERPFDDLFDFCERVDRRQVNRRTIEALIRAGAFDSLNDNR 906

Query: 895  YMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
              L+AS+ +A++ A++  +  NQ+SLF   D+         V  P W+ K+ L EEK+ L
Sbjct: 907  AQLLASVSIAMEAADQKAESANQVSLFDLMDDAGASHRPELVDEPRWTPKRTLQEEKQAL 966

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGIITELKLKTTY 1002
            G+  S H+F     E+R+F+   L+ L            +      ++G+IT ++ + T 
Sbjct: 967  GYYFSGHLFDASRDEVRRFVKGTLAALEKEVQGNGGGYGRDVRGKVIAGVITGIRTQMTQ 1026

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            RGK++I+++DD +  +E+ + N+LY+ N+++ +E+ELLI  G    D F   +R  A+ +
Sbjct: 1027 RGKLIIVLLDDGTAQIEMTVFNELYDANRHMFREDELLIAQGNARHDTFTGGVRFTADSV 1086

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKCK----NGLPFVLYYCINKSIKYEM 1118
             D+  AR  Y     + FN   +   L+++L  +        G+P  + Y +NK+ + E 
Sbjct: 1087 QDLVAARARYADAVCLGFNGNASTERLRELLTPYLAHVSQTPGVPVRISY-VNKTAQCEA 1145

Query: 1119 KFPLNYKVQPIDDLKLAL 1136
                 +++ P ++   +L
Sbjct: 1146 MLGDQWQITPSEEALTSL 1163


>gi|393775948|ref|ZP_10364245.1| DNA polymerase III subunit alpha [Ralstonia sp. PBA]
 gi|392716891|gb|EIZ04468.1| DNA polymerase III subunit alpha [Ralstonia sp. PBA]
          Length = 1195

 Score = 1261 bits (3262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1168 (53%), Positives = 832/1168 (71%), Gaps = 40/1168 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG++R++D I AAA D   ALA+TDL+N FG+++FYK A  KG+K
Sbjct: 20   PRFVHLRLHSEYSIVDGIVRLDDAIAAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 79

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G +VW+TN  +  K  R+LLLV+   GYL LC+LL++A++ N   GRAE+  +W E+
Sbjct: 80   PLVGAEVWLTNSEDRDKTGRMLLLVQGKQGYLNLCDLLARAWLNNQYRGRAEVMPQWFEE 139

Query: 123  -----NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
                 N     LIALSGA LGD+G+A+ NG    AE  AR W+++FPD +YIE+QR    
Sbjct: 140  PGSDGNPLSHELIALSGALLGDVGMALANGNPAGAERLARHWARVFPDRYYIELQRAGHA 199

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 IQQ + +A+++ LP+VATHPIQF+   ++ AHE R CI+EGE+L+N +R+++FT 
Sbjct: 200  GTEAYIQQAVQLAASLRLPVVATHPIQFMTPDDYTAHEARVCISEGELLANPRRVRRFTT 259

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM+ LF D+PSA++N +EIA+RCNL LE GKPKLP FPTP  ++++D+L+  
Sbjct: 260  DQYFKTQDEMVALFADLPSALENAVEIARRCNLTLELGKPKLPLFPTPDGLSLDDYLVLM 319

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 320  AKEGLEKRMAVLFPDEAVREQKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 379

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP+R+SMPDFDIDFC  GRDRVI
Sbjct: 380  VPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPDRVSMPDFDIDFCQAGRDRVI 439

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
            QYVK++YG DAVSQI TFGTMAAK A+RDVGRVLDL Y F D ++KLIPFKPGKL+TL  
Sbjct: 440  QYVKEKYGTDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGVAKLIPFKPGKLVTLEE 499

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP LAER KNE+EVRQL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q  
Sbjct: 500  AKKEEPLLAEREKNEDEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 559

Query: 536  --EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
              +G +G++SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++     ++ +++PL
Sbjct: 560  QNDGSSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRQLDPSKEGWNCSQIPL 619

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            +D   +++LK ANTVAVFQLES+GM+ MLK+A PD FE+IIAL++LYRPGPMDLI +FC 
Sbjct: 620  DDPAAFSILKSANTVAVFQLESRGMQGMLKDALPDRFEDIIALVALYRPGPMDLIPSFCA 679

Query: 654  RKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            RKHG E   YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  
Sbjct: 680  RKHGREQVEYPDPRVEPILKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPE 739

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM +HR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTAYLK H+
Sbjct: 740  EMAQHRELFRAGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAYLKAHH 799

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCG-LSILPPNINLSKYYFFPIIESDGKHKKI 831
             + FMAANLSL+MDDT+K+KIL +D++     L++LPP+IN S Y F P  E     + I
Sbjct: 800  PAAFMAANLSLAMDDTDKVKILYEDSVSAENKLAMLPPDINQSDYRFAPADE-----RTI 854

Query: 832  RYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            RYGLGA+KG+G+  IE I+  R    FT+LFDF +RID++ +NRR + +LI +GAFD  +
Sbjct: 855  RYGLGAVKGSGQGAIEEILRARAERPFTDLFDFCERIDRRVVNRRTVEALIRAGAFDTLH 914

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFK-NDDNNNLKEYLNYVKVPSWSKKQELIEE 950
              R  L+AS+  A++ A++  +  NQ+SLF    D          V  P+WS K+ L EE
Sbjct: 915  PNRAQLLASVPRAMEAADQKAESANQVSLFDLMGDAEASGHRPELVDEPAWSPKRMLQEE 974

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT----------------VSGIIT 994
            K+ LGF  S H+F  Y +E+R+F    L+ L    +                  V+G+IT
Sbjct: 975  KQALGFYFSGHLFDAYSSEVRRFARTTLAALTKEVTSQGGGGGGYGSRDVRNKLVAGVIT 1034

Query: 995  ELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
             L+ + T RGK+LI+++DD +  +E+ + N+LYE ++ +L+E+ELLI  G    D F   
Sbjct: 1035 GLRTQMTQRGKMLIVLLDDGTAQIEMTVFNELYEAHRAMLREDELLIAQGNARFDSFTGG 1094

Query: 1055 IRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGLPFVLYY 1108
            +R   E I D+ +AR  + +  ++  N   +   L+++L             GLP  + Y
Sbjct: 1095 VRFTVESIMDLTLARSRFARGVALRMNGNSDPKALRELLKPHVAPRSDDGPTGLPIHIEY 1154

Query: 1109 CINKSIKYEMKFPLNYKVQPIDDLKLAL 1136
              N   + E      +++ P DD  LAL
Sbjct: 1155 S-NGQARCETVLGDAWRILPSDDALLAL 1181


>gi|374366998|ref|ZP_09625069.1| DNA polymerase III subunit alpha [Cupriavidus basilensis OR16]
 gi|373101445|gb|EHP42495.1| DNA polymerase III subunit alpha [Cupriavidus basilensis OR16]
          Length = 1170

 Score = 1259 bits (3258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1155 (52%), Positives = 820/1155 (70%), Gaps = 33/1155 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYS++DG++R++D ++AAA D   ALA+TDL+N FG+I+FYK A   G+K
Sbjct: 4    PRFVHLRLHSEYSVVDGIVRLDDAVKAAATDGMGALALTDLANAFGLIRFYKEARGGGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL-- 120
            P++G DVW+TN  +  KP+RLLLLV++  GYL LC LLS+A++ N   GRAEI   W   
Sbjct: 64   PVVGADVWLTNADDRDKPTRLLLLVQDRIGYLNLCVLLSRAWLSNQYRGRAEIDPAWFDE 123

Query: 121  ---EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
               E      GLI LSGA  GDIG+A+ NG +  A   A  W+K+FP  FYIE+QR   P
Sbjct: 124  AGEEGQPLATGLIVLSGAMGGDIGMALANGNDAAAAQAAAHWAKVFPQRFYIELQRAGLP 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
              +  +QQ + +A+ + LP+VATHP+QF+   +F AHE RTCIAEGE+L+N +R+++FT 
Sbjct: 184  GTDAYVQQAVQLAARLRLPVVATHPVQFMTPDDFTAHEARTCIAEGELLANPRRVRRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA++N ++IA+RCNL LE GKP+LP FPTP  ++++D+L+  
Sbjct: 244  DQYFKTQDEMCALFADIPSALENAVQIARRCNLTLELGKPRLPLFPTPDGMSLDDYLVHL 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KR+  L+ D  + +  +  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKEGLEKRMPVLFPDEAVREARRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC +GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQQGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YG  AVSQI TFGTMAAK A+RDVGRVLDL Y F D I+KLIPFKPGKL+T+  
Sbjct: 424  TYVKEKYGHAAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGIAKLIPFKPGKLVTIEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP L ER KNEEEVRQL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q  
Sbjct: 484  AKKEEPLLTEREKNEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGA 543

Query: 536  --EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
              +GM+G++SQYDKDD+E  GL+KFDFLGLTTL+ILD    +I++++    +++ + +PL
Sbjct: 544  QNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPSMADWNCSHIPL 603

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            +D   +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC 
Sbjct: 604  DDSKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA 663

Query: 654  RKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            RKHG E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  
Sbjct: 664  RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAE 723

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM +HR+ F+ GA K GL+  KA++ F+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+
Sbjct: 724  EMAQHRELFREGAAKNGLTAEKADDTFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH 783

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAAN+SL+MDDT+K+KIL  D  K   L +LPP++N S+Y F P        K IR
Sbjct: 784  PAAFMAANMSLAMDDTDKVKILFDD-CKLNKLQVLPPDVNASEYRFAPT-----DAKTIR 837

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YGLG IKG+G+  IE I+  R+   F +LFDF +R+D++ +NRR I +LI +GAFD  N+
Sbjct: 838  YGLGGIKGSGQGAIEDILRAREEKPFADLFDFCERVDRRQVNRRTIEALIRAGAFDSLND 897

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             R  L+AS+  A++ AE+  +  NQ+SLF    +         V  P+W+ K+ L EEK+
Sbjct: 898  NRGQLLASVSRAMEAAEQKAESANQVSLFDLMADAGESHRPELVDEPAWAPKRMLQEEKQ 957

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGIITELKLKT 1000
             LG+  S H+F  Y  E+ +F+   L+ L            +      ++G+IT ++ + 
Sbjct: 958  ALGYYFSGHLFDAYRDEVGRFLKGTLAGLEKEVQGNGGGYGRDVRGKVIAGVITGMRTQM 1017

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
            T RGK+LI+++DD +  VE+ + N+L++ N+++ +E+E++IV G    D F   +R  AE
Sbjct: 1018 TQRGKMLIVLLDDGTGQVEMTVFNELFDANRHMFREDEMVIVQGNARHDTFTGGVRFTAE 1077

Query: 1061 KIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC----KNGLPFVLYYCINKSIKY 1116
             + D+  AR  Y +   + FN   +  +L+++L  +        G+P  + Y    + + 
Sbjct: 1078 SVMDLVAARAKYAEAVGLAFNGNASTELLRELLTPYLANVANTPGVPVRVSYATTGA-RC 1136

Query: 1117 EMKFPLNYKVQPIDD 1131
            E +    + V P DD
Sbjct: 1137 EAELGRQWLVTPSDD 1151


>gi|421746914|ref|ZP_16184672.1| DNA polymerase III subunit alpha [Cupriavidus necator HPC(L)]
 gi|409774492|gb|EKN56105.1| DNA polymerase III subunit alpha [Cupriavidus necator HPC(L)]
          Length = 1170

 Score = 1258 bits (3256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1161 (53%), Positives = 825/1161 (71%), Gaps = 35/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG++R+ D ++AAA D   ALA+TDL+N FG+I+FYK A   G+K
Sbjct: 4    PRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRFYKEARGGGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G DVW+TN  +  KP+R+LLLV++  GYL LC LLS+A++ N   GRAE+   W E+
Sbjct: 64   PIVGADVWLTNADDRDKPARMLLLVQDRRGYLNLCVLLSRAWLSNQYRGRAELEPGWFEE 123

Query: 123  N-----KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
                      GLIALSGA  GD+G A+ NG    A   A+ W+ +FP  +YIE+QR   P
Sbjct: 124  PGEDGLPLSTGLIALSGAMGGDVGQALANGNEAAARRAAQHWASVFPQRYYIELQRAGHP 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 +Q+ + +A+ + LP+VATHP+QF+   +  AHE R CIAEGE+L+N +R ++FT 
Sbjct: 184  GTEAYVQRAVQLAAALQLPVVATHPVQFMTPDDHTAHEARVCIAEGELLANPRRARRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA++N ++IA+RCNL LE GKP+LP FPTP  ++++D+L+  
Sbjct: 244  DQYFKTQDEMCALFADIPSALENAVQIARRCNLTLELGKPRLPLFPTPDGMSLDDYLVHM 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            SK GL++RL  L+ D    + ++  Y  RL+FE   IIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  SKEGLERRLEVLFPDEATREAKRPEYYARLEFETGIIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
            QYVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y+F D ++KLIPFKPGKL+T+  
Sbjct: 424  QYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVTIEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP L ER  NEEEVRQL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q  
Sbjct: 484  AKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 536  --EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
              +GM+G++SQYDKDD+E  GL+KFDFLGLTTL+ILD    +I++++    +++ +++PL
Sbjct: 544  QNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPGKADWNCSQIPL 603

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            +D   +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL+SLYRPGPMDLI +FC 
Sbjct: 604  DDPAAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVSLYRPGPMDLIPSFCA 663

Query: 654  RKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            RKHG E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  
Sbjct: 664  RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPE 723

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM +HR+ F+ GA K GLS  KA+EIF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+
Sbjct: 724  EMAKHRELFREGAAKNGLSSDKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH 783

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAAN+SL+MDDT+K+KIL +D  +  GL +LPP++N S+Y F P        K IR
Sbjct: 784  PAEFMAANMSLAMDDTDKVKILYED-CRANGLRVLPPDVNASEYRFAPT-----DAKTIR 837

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YGLG IKG+G+  IE I+  R+   FT+LFDF +R+D++ +NRR I +LI +GAFD  + 
Sbjct: 838  YGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEALIRAGAFDTLHP 897

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             R  L+AS+  A++ AE+  +  NQ+SLF    DD +  +  L  +  P+W+ K+ L EE
Sbjct: 898  NRAQLLASVPRAMEAAEQKAESANQVSLFDLMADDGDAHRPEL--IDEPAWTPKRMLQEE 955

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGIITELKL 998
            K+ LG+  S H+F  Y  E+R+F+   L+ L            +      V+G+IT ++ 
Sbjct: 956  KQALGYYFSGHLFDAYRDEVRRFVKGTLAALEKEVQGNGGGYGRDVRGKMVAGVITGIRT 1015

Query: 999  KTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
            + T RGK+LI+++DD +  +E+ + N++++ N+++ +E+ELLI  G    D F   +R  
Sbjct: 1016 QMTQRGKMLIVLLDDGTGQIEMTVFNEVFDANRHMFREDELLIAQGNARHDTFTGGVRFT 1075

Query: 1059 AEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCI---NKSIK 1115
            AE + D+  ARI + +   +  N   + ++L+++L      +     L  CI   + S  
Sbjct: 1076 AETVMDLTTARIRHARALKLSLNGNSSTAMLRELLTPHLAASAGAAGLPVCIQYASASAV 1135

Query: 1116 YEMKFPLNYKVQPIDDLKLAL 1136
             E      ++V P DD   AL
Sbjct: 1136 CEAVLGQAWQVVPSDDTLAAL 1156


>gi|194288945|ref|YP_002004852.1| DNA polymerase III subunit alpha [Cupriavidus taiwanensis LMG 19424]
 gi|193222780|emb|CAQ68783.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 1170

 Score = 1251 bits (3237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1160 (53%), Positives = 829/1160 (71%), Gaps = 33/1160 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI+DG++R++D ++AAA D   ALA+TDL+N FG+I++YK A  KG+K
Sbjct: 4    PRFVHLRLHSEYSIVDGIVRLDDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVW+TN  +  KP+RLLLLV++  GYL LC LLS+A++ N + GRAEI   W ++
Sbjct: 64   PVVGADVWLTNAEDRDKPARLLLLVQDRRGYLNLCMLLSRAWLGNQHRGRAEIDPAWFQE 123

Query: 123  NKYQD-----GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
                D     GLIALSGA  GDIG+A+ NG  D A   A+ W+ +FP  FYIE+QR    
Sbjct: 124  PGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWAAVFPQRFYIELQRAGHA 183

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
              +  +QQ + +A+++ LP+VATHP+QF+   ++ AHE R CIAEGE+L+N +R ++FT 
Sbjct: 184  GTDAYVQQAVQLAASLQLPVVATHPVQFMTPDDYTAHEARVCIAEGELLANPRRTRRFTT 243

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA++N +EIA+RCNL LE GKP+LP FPTP  ++++D+L+  
Sbjct: 244  DQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPTPDGMSLDDYLVFM 303

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KRL  L+ D  + + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 304  AKEGLEKRLAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 363

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 364  VPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQHGRDRVI 423

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y F D I+KLIPFKPGKL+T+  
Sbjct: 424  TYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGIAKLIPFKPGKLVTIEE 483

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP L ER +NEEEVRQL+ELA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q  
Sbjct: 484  AKKEEPLLTERERNEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYTQGG 543

Query: 536  --EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
              +GM+G++SQYDKDD+E  GL+KFDFLGLTTL+ILD    +I++++    +++ + +PL
Sbjct: 544  QNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWNCSHIPL 603

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            +D   +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC 
Sbjct: 604  DDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA 663

Query: 654  RKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            RKHG E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  
Sbjct: 664  RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPE 723

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM +HR  F+ GA K GLS  +A++IF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+
Sbjct: 724  EMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH 783

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAAN+SL+MDDT+K+KIL +D  K   +++LPP++N S+Y F P        K IR
Sbjct: 784  PAEFMAANMSLAMDDTDKVKILYED-CKLNKIAVLPPDVNASEYRFAPT-----DPKTIR 837

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YGLG IKG+G+  IE I+  R+   FT+LFDF +R+D++ +NRR I +LI +GAFD  N+
Sbjct: 838  YGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEALIRAGAFDSLND 897

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             R  L+AS+ +A++ AE+  +  NQ+SLF    +         +  P WS K+ L EEK+
Sbjct: 898  NRAQLLASVPIAMEAAEQKAESANQVSLFDLMGDAGDAHRPELLDEPRWSPKRTLQEEKQ 957

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGIITELKLKT 1000
             LG+  S H+F  Y  E+R+F    L+ L            +     T++G+I+ ++ + 
Sbjct: 958  ALGYYFSGHLFDAYRDEVRRFNKGTLAGLEKEVQGNGGGFGRDVRGKTIAGVISGMRTQM 1017

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
            T RGK+LI+ +DD +  VE+ + N++++ N+ + +E+ELLI +G    D F   +R  AE
Sbjct: 1018 TQRGKMLIVTLDDGTGLVEMTVFNEVFDANRQMFREDELLIATGNARHDTFTGGVRFTAE 1077

Query: 1061 KIFDINVARILYGKKFSVMFNRTFNISILKKILL----RFKCKNGLPFVLYYCINKSIKY 1116
             + D+  AR+ +     +  N   +  +L+++L+    R     GLP  + Y   K+   
Sbjct: 1078 SVMDLVAARVRFASAVRLSMNGNSSTGMLRELLMPHLARASGMQGLPVRIRYEA-KAASC 1136

Query: 1117 EMKFPLNYKVQPIDDLKLAL 1136
            E      ++V P D+   AL
Sbjct: 1137 EAMLGPEWQVVPSDEALTAL 1156


>gi|73542219|ref|YP_296739.1| DNA polymerase III subunit alpha [Ralstonia eutropha JMP134]
 gi|72119632|gb|AAZ61895.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134]
          Length = 1175

 Score = 1246 bits (3224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/1174 (52%), Positives = 833/1174 (70%), Gaps = 37/1174 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSEYS++DG++R++D ++AAA+D   ALA+TDL+N FG+I+FYK A   G+K
Sbjct: 7    PRFVHLRVHSEYSVVDGIVRLDDAVKAAASDGMGALALTDLANAFGLIRFYKEARGGGVK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DVW+ NE +  KP+RLLLLV++  GYL LC LLS+A++ N + GRAEI   W E+
Sbjct: 67   PVVGADVWLANEDDRDKPARLLLLVQDRVGYLNLCTLLSRAWLTNQHRGRAEIEPGWFEE 126

Query: 123  -----NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
                      GLIALSGA  GD+G+A+ NG  D A   A  W+ +FP  FYIE+QR   P
Sbjct: 127  PGEGGQPLATGLIALSGAMGGDVGMALANGNVDAARRAAAHWAAVFPQRFYIELQRAGHP 186

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
              +  +QQ +++A+ + LP+VATHP+QF+   +F AHE R CIAEGE+L+N +R ++FT 
Sbjct: 187  GTDAYVQQAVHLAAEMQLPVVATHPVQFMTPDDFTAHEARVCIAEGELLANPRRTRRFTT 246

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q FKTQ EM  LF DIPSA+QN +EIA+RCNL LE GKP+LP FPTP  ++++D+L+  
Sbjct: 247  DQYFKTQDEMCALFADIPSALQNAVEIARRCNLTLELGKPRLPLFPTPDGMSLDDYLVFM 306

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            +K GL+KRL  L+ +    + ++  Y  RL+FE  TIIKM F GYFLIV+DFI WAKNN 
Sbjct: 307  AKDGLEKRLSVLFPNEAEREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAKNNG 366

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC  GRDRVI
Sbjct: 367  VPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQHGRDRVI 426

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YVK++YGKDAVSQI TFGTMAAK A+RDVGRVLDL Y F D I+KLIPFKPGKL+T+  
Sbjct: 427  TYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGIAKLIPFKPGKLVTIEE 486

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ-- 535
            A KEEP L ER  NEEEVRQL+ELA++VEG+ RNVGMHAGGVLIAP +L +FCPLY Q  
Sbjct: 487  AKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGRLTDFCPLYTQGG 546

Query: 536  --EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
              +GM+G++SQYDKDD+E  GL+KFDFLGLTTL+ILD    +I++++    +++ + +PL
Sbjct: 547  QNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWNCSHIPL 606

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            +D   +++LK ANTVAVFQLES+GM+ MLK+AKPD FE+IIAL++LYRPGPMDLI +FC 
Sbjct: 607  DDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA 666

Query: 654  RKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            RKHG E   YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  
Sbjct: 667  RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPE 726

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM +HR  F+ GA K GL+  +A++IF+ +EKFAGYGFNKSHA AYALL+YYTA+LK H+
Sbjct: 727  EMAQHRVMFREGADKNGLNAEQADDIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH 786

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAAN+SL+MDDT+K+KIL +D  K   +++LPP++N S+Y F P        K IR
Sbjct: 787  PAEFMAANMSLAMDDTDKVKILYED-CKLNKIAVLPPDVNASEYRFAPT-----DAKTIR 840

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YGLG IKG+G+  IE I+  R+   F +LFDF +R+D++ +NRR I +LI +GAFD  N 
Sbjct: 841  YGLGGIKGSGQGAIEDILRAREERPFKDLFDFCERVDRRQVNRRTIEALIRAGAFDSLNN 900

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             R  L+AS+ +A++ A++  +  NQ+SLF   D+         +  P+W+ K+ L EEK+
Sbjct: 901  NRAQLLASVSIAMEAADQKAESANQVSLFDLMDDAGEAHRPELIDEPAWTPKRTLQEEKQ 960

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGIITELKLKT 1000
             LG+  S H+F     E+R+F+   L+ L            +     T++G+I  ++ + 
Sbjct: 961  ALGYYFSGHLFDACRDEVRRFVKSTLAGLEKEVQGNGGGFGRDVRGKTIAGVIAGVRTQM 1020

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
            T RGK++I+ +DD +  VE+ + N+L++ N+++ +E+ELLI +G    D F   +R  AE
Sbjct: 1021 TQRGKMIIVQLDDGTGVVEMTVFNELFDANRHMFREDELLIATGNARHDTFTGGVRFTAE 1080

Query: 1061 KIFDINVARILYGKKFSVMFN-RTFNISILKKILLRFKCK------NGLPFVLYYCINKS 1113
             + D+ +AR  Y    S+        +  L+ +L +++ K       GL  ++ Y  N S
Sbjct: 1081 SVMDLAMARSAYASALSIALAPEDSTMDRLRTVLTQYRAKPRDAGPAGLGLLVRY-RNPS 1139

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
               E+    N++V+P D+  L  +   L N  +E
Sbjct: 1140 AACEIHLGPNWRVEP-DEALLGELRQWLGNDAVE 1172


>gi|348617895|ref|ZP_08884429.1| DNA polymerase III, alpha subunit [Candidatus Glomeribacter
            gigasporarum BEG34]
 gi|347816839|emb|CCD29083.1| DNA polymerase III, alpha subunit [Candidatus Glomeribacter
            gigasporarum BEG34]
          Length = 1158

 Score = 1244 bits (3220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1147 (53%), Positives = 813/1147 (70%), Gaps = 26/1147 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLRLHSEYSI DG++R+ D + AAA D Q ALA+TDL N+FG +KFY+ A  +G+K
Sbjct: 4    PRFIHLRLHSEYSITDGIVRLEDAVRAAARDGQGALALTDLGNVFGWVKFYQYALRQGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  E  +PSRLLLLV+N  GYL LCELLS+A++ N+  GRAEI  EWLE 
Sbjct: 64   PIAGCDVWITNPGERDQPSRLLLLVRNARGYLNLCELLSRAWLTNVYQGRAEIAFEWLES 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLIALSGA  GDIG+A+  G  + A   A+RW+++FPD FYIE+QR  QP     
Sbjct: 124  G-LAEGLIALSGAQQGDIGLAIAAGNMEAARQCAQRWARLFPDCFYIEVQRADQPEEAIY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  +++A  + +P+VA  P+QF+   +  AHE R CIA GE L+  +R  +F++ Q F+
Sbjct: 183  IQHAVHLAVQLQIPLVAAQPVQFMTPDDAAAHEARVCIAHGERLAYAQRRPRFSRAQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM  LF D+PSA+ N++EIAKRC L LE GK KLP FPTP+ ++++ +L   +  GL
Sbjct: 243  TQAEMCALFADLPSALANSVEIAKRCTLTLELGKAKLPLFPTPEALSLDAYLRQLAGQGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ D +    ++  Y +RL FE +TII+M F+GYFLIV+DFI WAKN+ IPVGP
Sbjct: 303  EARLEQLFADADERGRQRPVYAQRLAFECDTIIEMGFAGYFLIVADFINWAKNSDIPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDFCP GRDRVIQYV+ 
Sbjct: 363  GRGSGAGSLVAFALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCPHGRDRVIQYVRG 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQIV FGTMAA+ A+RD+GRVLDL Y+F D I+KLIPF+PG+ IT+++A+KEE
Sbjct: 423  KYGHDAVSQIVAFGTMAARAAVRDIGRVLDLGYTFTDGIAKLIPFRPGRAITIADALKEE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT--- 539
            PQLAER KNEEEV+QL+ LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q G     
Sbjct: 483  PQLAERCKNEEEVQQLLTLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYAQSGQKNAN 542

Query: 540  ---GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
               G +SQYDKDD+E IGL+KFD LGLTTL+ILD     I++   +   +SL + PL+D 
Sbjct: 543  GEIGTVSQYDKDDVEAIGLVKFDLLGLTTLTILDWVERDIRRSIPERARWSLKETPLDDA 602

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
              + +L++ANT+AVFQ E +GM+ +LK+A+PD+FE+IIAL+SLYRPGPM+LI +FC RKH
Sbjct: 603  SAFEVLQQANTIAVFQFEGRGMQALLKDARPDHFEDIIALVSLYRPGPMELIPSFCARKH 662

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G E  +YPDPR + +LSETYGIMVYQEQVMQ+AQI+GGY+LG ADLLRRA+GKKK  EM 
Sbjct: 663  GDEKIDYPDPRVESILSETYGIMVYQEQVMQMAQIIGGYTLGGADLLRRAMGKKKPEEMA 722

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            +HR  F++GA + GLS+ KA+EIFN +EKFAGYGFNKSHA AYALL+YYTA+LK HY   
Sbjct: 723  QHRALFRDGAAENGLSRAKADEIFNLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHYPVE 782

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAANLSLSMD+T+++KILV+D      + +LPP+IN S+  F P+ E      KI YGL
Sbjct: 783  FMAANLSLSMDNTDRVKILVEDCAAN-RIMVLPPDINQSRTRFLPLKE------KILYGL 835

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            GAIKG+G+S  + IV  R    F ++FDF +R+D++ +NRR + +LI +G+FD  +  R 
Sbjct: 836  GAIKGSGQSASDEIVRARADQPFQDIFDFCRRVDRRIVNRRALEALIRAGSFDALHANRA 895

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
             L+AS   AL+ AE+T    +Q  LF +  +  ++       V +W +KQ L EEK  LG
Sbjct: 896  QLLASAPRALETAEQTSAHASQGGLFDDAGHGGIEHACTLADVSAWPEKQRLQEEKAALG 955

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNS 1015
            F LS H F +Y+ E R+F+P  L++L        +GII  L+  TT RGK+ I+++DD +
Sbjct: 956  FYLSGHPFDLYKNEARRFVPNALNQLTEGAGTRAAGIIRSLRAATTQRGKMWIVMLDDGA 1015

Query: 1016 NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKK 1075
               E+ + ++L   ++N+L E+ LLIV+G    D F   IRI AE + D+  AR  + + 
Sbjct: 1016 GQCEITLFDELAAAHRNLLTEDALLIVAGSARHDAFSGGIRIIAESVMDLKTARSRFARA 1075

Query: 1076 FSVMFNRTFNISI--LKKILLRFKCK--------NGLPFVLYYCINKSIKYEMKFPLNYK 1125
              + F++        L++ L  ++ +         GLP V  +   K+ +       +++
Sbjct: 1076 LRITFDQPAPADTVQLREWLSPYRTEEAPGAERPTGLP-VQVHLRGKTARATFLLGASWR 1134

Query: 1126 VQPIDDL 1132
            V P D+L
Sbjct: 1135 VIPCDEL 1141


>gi|410694619|ref|YP_003625241.1| DNA polymerase III subunit alpha [Thiomonas sp. 3As]
 gi|294341044|emb|CAZ89439.1| DNA polymerase III subunit alpha [Thiomonas sp. 3As]
          Length = 1146

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/1112 (51%), Positives = 785/1112 (70%), Gaps = 19/1112 (1%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            ++HLR H+EYSI+DG LR++D++ AAA D Q ALAITD +NLF  ++FYK+A + G+KPI
Sbjct: 3    YVHLRTHTEYSIVDGALRVDDMVPAAARDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IGCDV + +     + +RLLLLV+N  GYL LC+LLS+A+++N   GRA ++ EWLE   
Sbjct: 63   IGCDVLLGSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAVVQWEWLEGG- 121

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALSGAH G IG A+  G    A + AR+ + +F   FYIE+QR         +Q
Sbjct: 122  LAEGLIALSGAHEGAIGQALLQGDTATARDLARQHAAVFEGRFYIELQRGGHAACEPHVQ 181

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ + LP+VATHP+QFLK  +F AHE R CIAEGE L N +R +KFT +Q FK+Q
Sbjct: 182  AAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRKFTAQQYFKSQ 241

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSA+ NT+ IA+RCNL L+ GKP+LP FPTP+ +   +F   +++ GL++
Sbjct: 242  AEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPQGLTPAEFFRQQAQDGLEQ 301

Query: 305  RLLNLYKDPEIYKCE--KLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  LY  P+  +CE  + RY++RL++E+  I KM F GYFLIV+DFI WAKNN  PVGP
Sbjct: 302  RLAVLY--PQADQCEAARPRYQQRLEYELGIIAKMGFEGYFLIVADFINWAKNNGCPVGP 359

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC E RDRVI YVK+
Sbjct: 360  GRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQENRDRVIDYVKE 419

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAA+ A+RDVGRVLDL Y+FCD I+KLIP KPG+ I+L++A+K+E
Sbjct: 420  KYGVDAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPGQHISLADALKQE 479

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P LA+R + EEEVRQL++LA+Q+EG+ RN+GMHAGGVLIAP KL +FCPLY Q G T  +
Sbjct: 480  PLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFCPLYAQPGSTDAV 539

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQ+DKDD+E  GL+KFDFLGL TL+IL+     I++ +    +F L  +PL+D  +Y L+
Sbjct: 540  SQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLEDIPLDDAKSYKLM 599

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
             K +TVAVFQLES+GM+ ML++AKPD FE+IIAL++LYRPGPMDLI  +C RK G E   
Sbjct: 600  AKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPTYCARKAGKEDVV 659

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR   VL ETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM +HR  F
Sbjct: 660  YPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKKKPEEMAQHRGIF 719

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K G+   KANEIF+ +EKFAGYGFNKSHA AYALL+  TA++K HY + F+AAN+
Sbjct: 720  AEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMKAHYPAEFLAANM 779

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGT 841
            S+++DDT+K+KILV+DA + CG+++LPP++N S++ F P+       K IRY LGAIKG 
Sbjct: 780  SIALDDTDKLKILVEDA-QACGINVLPPDVNASQWRFDPV-----DSKTIRYALGAIKGN 833

Query: 842  GKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
            G++ +EA++  R+   FT+LFDF +R+D+  +N+R++ +L  +GAFD  + +R  ++A++
Sbjct: 834  GQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERAAVMAAV 893

Query: 902  DVALKNAEKTKKFINQLSLF------KNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
            + A+  A + +    Q  LF        D  +N        +V  W  + +L  EK  +G
Sbjct: 894  ETAMDYAAQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSFEKTAIG 953

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKILIIVIDDN 1014
            + LS H+F     E+R+F P  L +L  +     ++GI   ++L  + RG+I I+ ++D 
Sbjct: 954  YYLSGHLFDASAEEVRRFAPTALMDLVDSRDPVLIAGIAAGVRLVQSQRGRIAILALEDR 1013

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            S ++E++I   L +  ++ L+++ LL++ GK   DRF   +R NA+ ++ +  AR   GK
Sbjct: 1014 SGAMEIVIGESLLDTVRDRLRDDALLVLRGKAQTDRFNGGLRFNADSVWTLEEARARLGK 1073

Query: 1075 KFSVMFNRTFNISILKKILLRFKCKNGLPFVL 1106
               +  N   +   L  +  +   ++GLP +L
Sbjct: 1074 SIRLKLNGASSAEPLVGLARQHASEDGLPLLL 1105


>gi|456062810|ref|YP_007501780.1| DNA polymerase III, alpha subunit [beta proteobacterium CB]
 gi|455440107|gb|AGG33045.1| DNA polymerase III, alpha subunit [beta proteobacterium CB]
          Length = 1208

 Score = 1219 bits (3154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1125 (53%), Positives = 807/1125 (71%), Gaps = 41/1125 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+D + AA  D   ALA+TDLSNLFG+++FY +A + GIK
Sbjct: 4    PRFVHLRVHSEFSITDGVVRIDDAVAAAEKDGMGALALTDLSNLFGLVRFYSAARSSGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI G DVWI+N  +  +P RLLLLV+N++GYL LC+LLSKA +EN + GRAE+ ++W  +
Sbjct: 64   PIAGADVWISNPQDPDQPHRLLLLVQNHSGYLNLCQLLSKASLENQSRGRAEVDLKWFSE 123

Query: 123  --NKYQD---------GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEI 171
              +K +D         GLIALSG   GD+G A+  G+ D A+  A+ W+K+FP+ FYIE+
Sbjct: 124  PASKAEDKAANRTLAYGLIALSGGRWGDVGAALLAGQEDQAKEAAQHWAKLFPNTFYIEV 183

Query: 172  QRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKR 231
            QR   P    Q+Q   ++AS ++LPIVATHP+QF+++++F AHE R CIAEGE+L N +R
Sbjct: 184  QRGGHPQDEKQLQLACHLASELDLPIVATHPVQFMQRSDFTAHEARVCIAEGELLGNPRR 243

Query: 232  IKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININ 291
             KKF +EQ F +Q EM K F D+P A+ N++EIAKRCNL L  G+P+LP FPTP  I ++
Sbjct: 244  TKKFNQEQYFLSQEEMEKRFADLPVALANSVEIAKRCNLSLTLGQPRLPDFPTPPGITLD 303

Query: 292  DFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQ 351
            D+L+ +S+ GLK+ +   + DPE    E+ RY +RL FE++TI +M F GYFLIV+DFI 
Sbjct: 304  DYLLQQSEIGLKRHMERNFPDPEERAKEEARYHERLVFEVKTIAQMGFPGYFLIVADFIN 363

Query: 352  WAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPE 411
            WAKNN +PVGPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  
Sbjct: 364  WAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQH 423

Query: 412  GRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGK 471
            GRDRVIQYVKD+YGKDAVSQI TFGTMAA+ AIRDVGRVL+  Y+F D I+KLIP KPG+
Sbjct: 424  GRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNFVDGIAKLIPNKPGQ 483

Query: 472  LITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
             +T+  A KEE QL ER KNE+EVRQL+ LA+Q+EG+ RNVGMHAGGVLIAP +L +FCP
Sbjct: 484  YMTIEMAKKEEKQLGEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGRLTDFCP 543

Query: 532  LYKQEG-------MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT 584
            LY QE           +ISQ+DKDD+E IGL+KFDFLGLTTL+IL     +IK ++    
Sbjct: 544  LYTQEAKDSKDQESGSVISQFDKDDVEAIGLVKFDFLGLTTLTILAAAEKWIKALHADRK 603

Query: 585  NFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGP 644
            ++++ ++PL+D+  + +LK ANTVAVFQLES+GM+ ML+EAKPD FE+IIAL++LYRPGP
Sbjct: 604  DWNIGEIPLDDEKAFEVLKNANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYRPGP 663

Query: 645  MDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLR 703
            MDLI +F  RKHG +   YPDPR + VL ETYGIMVYQEQVMQ+AQ++GGYSLG AD+LR
Sbjct: 664  MDLIPDFIERKHGRQKVEYPDPRIEPVLQETYGIMVYQEQVMQMAQMIGGYSLGGADMLR 723

Query: 704  RAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763
            RA+GKKK  EM +HRK F +GA   G+++ KANEI++ +E+FAGYGFNKSHA AYALL+Y
Sbjct: 724  RAMGKKKPEEMAQHRKIFSDGAKAGGITEGKANEIYDLMERFAGYGFNKSHAAAYALLAY 783

Query: 764  YTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE 823
             TA+LK +Y + FMAANLSL+MDDT+K+KIL  D +    + +  P+IN   Y F P+  
Sbjct: 784  QTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLAN-NIRVFSPDINTGVYVFTPLRA 842

Query: 824  SDGKH----KKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRII 878
             D         IRYGLGA++GTG++ IE IV  R+ G  F +LFDF  R+D++ +NRR I
Sbjct: 843  PDAAPDSPISHIRYGLGAVRGTGEAAIEVIVKAREAGGPFKDLFDFCARVDRRQVNRRAI 902

Query: 879  NSLINSGAFDCFNEK-----------RYMLVASIDVALKNAEKTKKFINQLSLFK--NDD 925
             +L+ +GAFD   +            R  L+AS+  A++ AE+ +  INQ+SLF+   ++
Sbjct: 903  EALMRAGAFDSLYKDSIPAGGNPYDIRSTLLASLARAIEAAEQAEASINQVSLFEMAGEE 962

Query: 926  NNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY 985
            + +L E    V+ P WS+K+ L +EK  LG CL+ H+F  Y  E   FI   L+++    
Sbjct: 963  DRHLPE---LVREPVWSEKKRLQDEKSSLGLCLTGHMFDAYREETAHFIRQPLAKVTEGK 1019

Query: 986  SCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
               ++GIIT  ++ T  RG+++I  IDD + ++EV + +++YE N++ LKE+ELL+    
Sbjct: 1020 DQLIAGIITSARMLTGQRGRMMIATIDDGTAAIEVTLYSEVYEPNRSWLKEDELLVAKVN 1079

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILK 1090
            V  D+F   +RI +E + DI  AR+ + +   +  +   ++  L+
Sbjct: 1080 VTPDKFSGGMRIVSEAVMDITGARMRFARNIHLSIDSAIDLKSLR 1124


>gi|171463884|ref|YP_001797997.1| DNA polymerase III subunit alpha [Polynucleobacter necessarius subsp.
            necessarius STIR1]
 gi|171193422|gb|ACB44383.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. necessarius STIR1]
          Length = 1205

 Score = 1213 bits (3138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1123 (53%), Positives = 809/1123 (72%), Gaps = 38/1123 (3%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            +P+F+HLR+HSE+SI DG++RI+D + AA  D   ALAITDLSNLFG+++FY +A + GI
Sbjct: 3    LPRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSSGI 62

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            KPI G DVWI+N  +  +P RLLLLV+N++GYL LCELLS+A ++N + GRAE+   W  
Sbjct: 63   KPITGADVWISNPQDPDQPHRLLLLVQNHSGYLNLCELLSRASLDNQSRGRAEVDSAWFS 122

Query: 122  K--NKYQD---------GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIE 170
            +   K +D         GLIALSGA +G++G A+  G+ D A+  ARR+ K+FP +FYIE
Sbjct: 123  EPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRYEKLFPKSFYIE 182

Query: 171  IQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTK 230
            +QR   P     +Q   ++AS ++LP+VATHP+QF+++++F AHE R CIAEGE+L N +
Sbjct: 183  VQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVCIAEGELLGNPR 242

Query: 231  RIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNINI 290
            R KKF +EQ F TQ EM K F D+P A+ N++EIAKRCNL L  G+P+LP FPTP  I +
Sbjct: 243  RTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRLPDFPTPPGITL 302

Query: 291  NDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFI 350
            +++L+++S+ GL++ +   + DPE    E  RY +RL FE++TI +M F GYFLIV+DFI
Sbjct: 303  DEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTISQMGFPGYFLIVADFI 362

Query: 351  QWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCP 410
             WAKNN +PVGPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC 
Sbjct: 363  NWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQ 422

Query: 411  EGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPG 470
             GRDRVIQYVKD+YGKDAVSQI TFGTMAA+ AIRDVGRVL+  Y+F D I+KL+P KPG
Sbjct: 423  HGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNFVDGIAKLVPNKPG 482

Query: 471  KLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFC 530
            + +T+  A K+E QLAER KNE+EVRQL+ LA+Q+EG+ RNVGMHAGGVLIAP +L +FC
Sbjct: 483  QYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGRLTDFC 542

Query: 531  PLYKQEG----MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF 586
            PLY QE      + +ISQ+DKDD+E +GL+KFDFLGLTTL+IL     +IK ++    ++
Sbjct: 543  PLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAAAERWIKALHADRRDW 602

Query: 587  SLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD 646
            ++ ++PL+D+  +++LK+ANTVAVFQLES+GM+ ML+EAKPD FE+IIAL++LYRPGPMD
Sbjct: 603  NIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYRPGPMD 662

Query: 647  LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
            LI +F  RKHG +   YPDPR + VL ETYGIMVYQEQVMQ+AQ++GGYSLG AD+LRRA
Sbjct: 663  LIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMAQMIGGYSLGGADMLRRA 722

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM +HRK F +GA   G+S+ KANEI++ +E+FAGYGFNKSHA AYALL+Y T
Sbjct: 723  MGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNKSHAAAYALLAYQT 782

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
            A+LK +Y + FMAANLSL+MDDT+K+KIL  D +    + +  P+IN   Y F P+   D
Sbjct: 783  AWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCL-VNNIRVFSPDINTGVYEFTPLRAPD 841

Query: 826  GKH----KKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINS 880
                     +RYGLGA++GTG++ IE+IV  R+ G  F +LFDF  R+D++ +NRR I +
Sbjct: 842  AAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDLFDFCARVDRRQVNRRAIEA 901

Query: 881  LINSGAFDCFNEK-----------RYMLVASIDVALKNAEKTKKFINQLSLFK--NDDNN 927
            L+ +GAFD                R  L+AS+  A++ AE+ +  I Q+SLF+   ++N 
Sbjct: 902  LMRAGAFDDLYRDSVPAGGNLYDIRSTLLASLARAIEAAEQAEASIYQVSLFEVAGEENR 961

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
            +L E    V+ P WS+K+ L EEK  LG CL+ H+F  Y  E   FI   LS++      
Sbjct: 962  HLPE---LVREPVWSEKKRLQEEKTALGLCLTGHMFDAYRDETSHFIRQPLSKVTEGKDQ 1018

Query: 988  TVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047
             ++GIIT  ++ T  RG+++I  IDD + ++EV + +++YE N++ LKE+ELL+    V 
Sbjct: 1019 LIAGIITSARMLTGQRGRMMIATIDDGTAALEVTLYSEVYEPNRSWLKEDELLVAKVNVT 1078

Query: 1048 EDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILK 1090
             D+F   +RI +E + DI  AR+ +     V  +   +I +L+
Sbjct: 1079 PDKFSGGMRIVSEAVMDITGARMRFAHNVHVCIDNVIDIKMLR 1121


>gi|145588791|ref|YP_001155388.1| DNA polymerase III subunit alpha [Polynucleobacter necessarius subsp.
            asymbioticus QLW-P1DMWA-1]
 gi|145047197|gb|ABP33824.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1204

 Score = 1207 bits (3123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/1144 (52%), Positives = 807/1144 (70%), Gaps = 45/1144 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++RI+D +  A  D   ALA+TDLSNLFG+++FY +A + GIK
Sbjct: 4    PRFVHLRIHSEFSITDGVVRIDDAVATAVKDEMGALALTDLSNLFGLVRFYTAARSGGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI G DVW++N  +  +P RLLLLV+N++GYL LC+LLSKA ++N + GRAE+ + W  +
Sbjct: 64   PIAGADVWVSNPQDPDQPHRLLLLVQNHSGYLNLCQLLSKASLDNQSRGRAEVDLAWFSE 123

Query: 123  NKYQD-----------GLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEI 171
               +            GLIALS A  G++G A+   + D+A+  A R  K+FP +FYIEI
Sbjct: 124  PAAKAEDKAAKRTMAYGLIALSAARNGEVGAALLADQEDMAKAAALRLEKLFPKSFYIEI 183

Query: 172  QRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKR 231
            QR   P     +Q   ++AS + LP+VATHP+QF+++++F+AHE R CIAEGE+L N +R
Sbjct: 184  QRGGHPQDEKHLQLACHLASELKLPVVATHPVQFMQRSDFIAHEARVCIAEGELLGNPRR 243

Query: 232  IKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININ 291
             KKF  EQ F TQ EM K F D+P+AI N++EIAKRCNL L  G+P+LP FPTP  I ++
Sbjct: 244  QKKFNDEQYFLTQEEMEKRFADLPAAIANSVEIAKRCNLSLVLGQPRLPDFPTPPGITLD 303

Query: 292  DFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQ 351
            D+L+ +S+ GL++ +   + DPE    E  RY  RL FE++TI +M F GYFLIV+DFI 
Sbjct: 304  DYLLQQSEVGLERHMEKNFPDPEERAKEMSRYHDRLVFEVKTISQMGFPGYFLIVADFIN 363

Query: 352  WAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPE 411
            WAKNN +PVGPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  
Sbjct: 364  WAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQH 423

Query: 412  GRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGK 471
            GRDRVIQYVKD+YGKDAVSQI TFGTMAA+ AIRDVGRVL+  Y+F D I+KL+P KPG+
Sbjct: 424  GRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNFVDGIAKLVPNKPGQ 483

Query: 472  LITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
             +T+  A KEE QLAER KNE+EVRQL+ LA+Q+EG+ RNVGMHAGGVLIAP +L +FCP
Sbjct: 484  YMTIEMAKKEEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGRLTDFCP 543

Query: 532  LYKQEG----MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS 587
            LY QE      + +ISQ+DKDD+E IGL+KFDFLGLTTL+IL     +IK ++    ++ 
Sbjct: 544  LYTQESKDQDSSSVISQFDKDDVEAIGLVKFDFLGLTTLTILAAAERWIKALHADRKDWD 603

Query: 588  LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
            + ++PL+D+  +++LKKANTVAVFQLES+GM+ ML+EAKPD FE+IIAL++LYRPGPMDL
Sbjct: 604  IGEIPLDDEKAFDVLKKANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYRPGPMDL 663

Query: 648  IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            I +F  RKHG +   YPDPR + VL ETYGIMVYQEQVMQ+AQ++GGYSLG AD+LRRA+
Sbjct: 664  IPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMAQMIGGYSLGGADMLRRAM 723

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM +HRK F +GA   G+S+ KANEI++ +E+FAGYGFNKSHA AYALL+Y TA
Sbjct: 724  GKKKPEEMAQHRKIFSDGAKAGGISEAKANEIYDLMERFAGYGFNKSHAAAYALLAYQTA 783

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK +Y + FMAANLSL+MDDT+K+KIL  D +    + +  P+IN   Y F P+   D 
Sbjct: 784  WLKAYYPAEFMAANLSLAMDDTDKVKILYDDCL-VNQIRVFSPDINTGVYEFTPLRAPDA 842

Query: 827  KH----KKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSL 881
                    IRYGLGA++GTG++ IE+IV  R+  G F +LFDF  R+D++ +NRR I +L
Sbjct: 843  TPDSPISHIRYGLGAVRGTGEAAIESIVKAREADGPFKDLFDFCARVDRRQVNRRAIEAL 902

Query: 882  INSGAFDCFNEK-----------RYMLVASIDVALKNAEKTKKFINQLSLFK--NDDNNN 928
            + +GAFD                R  L+AS+  A++ AE+ +  I+Q+SLF+   +++ +
Sbjct: 903  MRAGAFDSLYRDSVPAGGNLYDIRSTLLASLARAIEAAEQAEASIHQVSLFEVAGEEHRH 962

Query: 929  LKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT 988
            L E    V+ P WS+K+ L EEK  LG CL+ H+F  Y  E   FI   LS+L       
Sbjct: 963  LPE---LVREPIWSEKKRLQEEKASLGLCLTGHMFDAYRDETAHFIRQPLSKLVEGKDQL 1019

Query: 989  VSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            V+GIIT  ++ T  RG+++I  IDD + +VEV + +++YE N++ LKE+ELLI    V  
Sbjct: 1020 VAGIITSARMLTGQRGRMMIATIDDGTAAVEVTLYSEVYEPNRSWLKEDELLIAKVNVSP 1079

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN-------G 1101
            D+F   +RI +E + DI  AR+ + +   V  +   +I +L+  +  +   N       G
Sbjct: 1080 DKFSGGMRIVSEAVMDITGARMRFARNIHVCLDPAIDIRMLRSQIGPYLMANRARDPRQG 1139

Query: 1102 LPFV 1105
             PF 
Sbjct: 1140 APFA 1143


>gi|82703844|ref|YP_413410.1| DNA polymerase III subunit alpha [Nitrosospira multiformis ATCC
            25196]
 gi|82411909|gb|ABB76018.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
          Length = 1174

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/1108 (52%), Positives = 805/1108 (72%), Gaps = 25/1108 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            FIHLRLHSEYS++DG++RI++ +  A  +  PALA+TDLSNLFG+IKFY+ A NKG+KPI
Sbjct: 7    FIHLRLHSEYSVVDGIVRIDEAVAKAVAEGMPALALTDLSNLFGLIKFYQEARNKGLKPI 66

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +GCDVWI+N+I+  K  R+LLL ++  GYL LC LLS+AY EN   GRAEIR  WL  + 
Sbjct: 67   VGCDVWISNDIDRDKSFRILLLCQSYPGYLALCRLLSRAYRENQYRGRAEIRKSWLSASD 126

Query: 125  Y-QDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               +GLIALSGA+LGDIG+A+ +   D A   A+ W+++FP  FYIE+QR    N    +
Sbjct: 127  LGTEGLIALSGANLGDIGLALIHNDLDQARTLAQEWTELFPGRFYIEVQRAGHANAEALV 186

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+ + +A+ + LP+VATHP+Q+L   ++ AHE R CI++G +L + +R +  T+EQ FKT
Sbjct: 187  QRSLALAAALRLPVVATHPVQYLNPEDYRAHEARVCISQGYVLGDRRRPRHCTEEQYFKT 246

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
            Q+EM  LF DIPSA+ NT+EIA+RCNL LE G  +LP+FPTP N +++ +L +++  GL+
Sbjct: 247  QAEMSALFADIPSALANTMEIARRCNLALELGINRLPQFPTPNNESLDLYLRNQASTGLE 306

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            KR+  L+ DP+    E  +Y+ RL FE +TI++M F+GYFLIV+DFI WAK N +PVGPG
Sbjct: 307  KRMRALFPDPDRRAAEMPKYRARLDFEADTIVQMGFAGYFLIVADFINWAKQNDVPVGPG 366

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC +GR+ VI+YVK +
Sbjct: 367  RGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSMPDFDIDFCQDGREHVIEYVKQK 426

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG ++VSQI TFGTMAAK  +RDVGRVLDL Y+F D ++KL+PF+ G  +TL  A +EEP
Sbjct: 427  YGAESVSQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKLVPFELG--MTLKKAREEEP 484

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
            QL +R + EEEVR L+ELA+++EG+ RNVGMHAGGVLIA  K+ +FCP+Y  +G   ++S
Sbjct: 485  QLNQRAEAEEEVRNLLELAERLEGLTRNVGMHAGGVLIAAGKITDFCPVYCADGGESVVS 544

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI-------NTKTTNFSLNKLPLNDK 596
            Q DKDD+E++GL+KFDFLGL TL+ILD ++ +I++        +++T +FSL  LPL+D 
Sbjct: 545  QLDKDDVEKVGLVKFDFLGLRTLTILDWSVRYIRQRKSGNTGNDSETRSFSLENLPLDDP 604

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
            DTY L+++ N V +FQ ES+GMK++L++A+PD FE++IAL++LYRPGPM LI  F  RKH
Sbjct: 605  DTYALMRQGNAVGIFQFESRGMKDLLQKARPDRFEDLIALVALYRPGPMSLIPEFIERKH 664

Query: 657  GE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+    Y DPR K +L  TYGIMVYQEQVMQIAQ++GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 665  GKRVVEYLDPRLKPILEPTYGIMVYQEQVMQIAQVIGGYSLGSADLLRRAMGKKKPEEMA 724

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
              R  F +GA+K GL++  A E+F+ +EKFAGYGFNKSHA AYAL+++ TAYLK HY S 
Sbjct: 725  LQRDIFVSGAVKNGLTEGDAAELFDLMEKFAGYGFNKSHAAAYALIAFQTAYLKAHYPSE 784

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FM+A LS  MDDT+K+ I  +D+I   GL++LPP+INLS Y F P+ E     K IRYGL
Sbjct: 785  FMSATLSADMDDTDKVHIFFEDSIAN-GLAVLPPDINLSGYRFVPVDE-----KTIRYGL 838

Query: 836  GAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKGTG+S I AI+  R + G F++LFDF  R+DK+ +NRR++ SLI +GAFD  +  R
Sbjct: 839  GAIKGTGESAIAAIIQAREQGGAFSDLFDFCHRVDKRIVNRRVVESLIRAGAFDAIDTHR 898

Query: 895  YMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
              L+AS+ +AL++AE+ ++ +NQ+SLF   +   + E    VKVP W +K+ L  EK  L
Sbjct: 899  AALLASVGIALESAEQAERSVNQVSLFG--EEMGVIERPALVKVPVWPEKETLKNEKLAL 956

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDD 1013
            G  LS H F  Y  E+  F+   L+ L P      ++GI+  ++ + T RG++ +IV+DD
Sbjct: 957  GLYLSGHPFNAYREELNHFVRTRLNRLVPQREPQLLAGIVYAIRTQVTRRGRMGVIVLDD 1016

Query: 1014 NSNSVEVIINNQLYEKNKNILKENELLI----VSGKVLEDRFLKNIRINAEKIFDINVAR 1069
             SN VE++  ++L+E  +  LKE++L+I    VS ++ +D +   +RI A+ ++D++ AR
Sbjct: 1017 GSNQVELVAYSELFESARGWLKEDQLVIAEARVSHRMGDDEYGNGLRITADVLYDLDGAR 1076

Query: 1070 ILYGKKFSVMFNRTFNISILKKILLRFK 1097
              Y ++  V  N + + + LK++L  ++
Sbjct: 1077 SRYARRVEVHCNGSSSATRLKELLAPYR 1104


>gi|296136875|ref|YP_003644117.1| DNA polymerase III subunit alpha [Thiomonas intermedia K12]
 gi|295796997|gb|ADG31787.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
          Length = 1146

 Score = 1204 bits (3116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1110 (50%), Positives = 777/1110 (70%), Gaps = 15/1110 (1%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            ++HLR H+EYSI+DG LR++D++ AA  D Q ALAITD +NLF  ++FYK+A + G+KPI
Sbjct: 3    YVHLRTHTEYSIVDGALRVDDMVPAAVRDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IGCDV + +     + +RLLLLV+N  GYL LC+LLS+A+++N   GRA ++ EWLE   
Sbjct: 63   IGCDVLLGSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAVVQWEWLEGG- 121

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALSGAH G IG A+  G    A +  R+ + +F   FY E+QR         +Q
Sbjct: 122  LAEGLIALSGAHEGAIGQALLQGDTATARDLTRQHAAVFEGRFYFELQRGGHAACEPHVQ 181

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ + LP+VATHP+QFLK  +F AHE R CIAEGE L N +R +KFT +Q FK+Q
Sbjct: 182  AAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRKFTAQQYFKSQ 241

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSA+ NT+ IA+RCNL L+ GKP+LP FPTP+ +    F   +++ GL++
Sbjct: 242  AEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPEGLTPAKFFRQQAQEGLEQ 301

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  LY   +  +  + RY++RL++E+  I KM F GYFLIV+DFI WAKNN  PVGPGR
Sbjct: 302  RLAVLYPQADEREAARPRYQQRLEYELGIIAKMGFEGYFLIVADFINWAKNNGCPVGPGR 361

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC E RDRVI YVK++Y
Sbjct: 362  GSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQENRDRVIDYVKEKY 421

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G +AVSQI TFGTMAA+ A+RDVGRVLDL Y+FCD I+KLIP KPG+ IT+++A+K+EP 
Sbjct: 422  GVEAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPGQHITIADALKQEPL 481

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
            LA+R + EEEVRQL++LA+Q+EG+ RN+GMHAGGVLIAP KL +FCPLY Q G T  +SQ
Sbjct: 482  LAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFCPLYAQPGSTDAVSQ 541

Query: 545  YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKK 604
            +DKDD+E  GL+KFDFLGL TL+IL+     I++ +    +F L  +PL+D  +Y L+ K
Sbjct: 542  FDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLEDIPLDDPKSYKLMAK 601

Query: 605  ANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFNYP 663
             +TVAVFQLES+GM+ ML++AKPD FE+IIAL++LYRPGPMDLI  +C RK G E   YP
Sbjct: 602  GDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPTYCARKAGKEDVVYP 661

Query: 664  DPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQN 723
            DPR   VL ETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM +HR  F  
Sbjct: 662  DPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKKKPEEMAQHRGIFAE 721

Query: 724  GAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSL 783
            GA K G+   KANEIF+ +EKFAGYGFNKSHA AYALL+  TA++K HY + F+AAN+S+
Sbjct: 722  GAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMKAHYPAEFLAANMSI 781

Query: 784  SMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGK 843
            ++DDT+K+KILV+DA +  G+++LPP++N S++ F P+       K IRY LGAIKG G+
Sbjct: 782  ALDDTDKLKILVEDA-QARGINVLPPDVNASQWRFDPV-----DSKTIRYALGAIKGNGQ 835

Query: 844  STIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDV 903
            + +EA++  R+   FT+LFDF +R+D+  +N+R++ +L  +GAFD  + +R  ++A+++ 
Sbjct: 836  AAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERAAVMAAVET 895

Query: 904  ALKNAEKTKKFINQLSLF------KNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFC 957
            A+  A + +    Q  LF        D  +N        +V  W  + +L  EK  +G+ 
Sbjct: 896  AMDYATQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSFEKTAIGYY 955

Query: 958  LSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKILIIVIDDNSN 1016
            LS H+F     E+R+F P  L +L  +     ++GI   ++L  + RG+I I+ ++D S 
Sbjct: 956  LSGHLFDASAEEVRRFAPTALMDLVDSRDPVLIAGIAAGVRLVQSQRGRIAILALEDRSG 1015

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
            ++E++I   L +  ++ L+++ LL++ GK   DRF   +R NA+ ++ +  AR   GK  
Sbjct: 1016 AMEIVIGESLLDTVRDRLRDDALLVLRGKAQTDRFNGGLRFNADSVWTLEEARARLGKSI 1075

Query: 1077 SVMFNRTFNISILKKILLRFKCKNGLPFVL 1106
             +  N   +   L  +  +   ++GLP +L
Sbjct: 1076 RLKLNGASSAEPLVGLARQHASEDGLPLLL 1105


>gi|393759193|ref|ZP_10348009.1| DNA polymerase III subunit alpha [Alcaligenes faecalis subsp.
            faecalis NCIB 8687]
 gi|393162421|gb|EJC62479.1| DNA polymerase III subunit alpha [Alcaligenes faecalis subsp.
            faecalis NCIB 8687]
          Length = 1158

 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/1115 (51%), Positives = 789/1115 (70%), Gaps = 18/1115 (1%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            + P F+HLR HSE+S++DG+ RI ++I+ A    QPALA+TDLSNLFG IKFY SA   G
Sbjct: 4    ITPSFVHLRSHSEFSVVDGIARIPEMIKKAQAYGQPALALTDLSNLFGQIKFYTSARKAG 63

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +K I+GCD+W+ NE + +KP+RLLLLV+N  GYL LC++L++A++ N   GRAE++  WL
Sbjct: 64   LKAIMGCDIWLQNEEDREKPARLLLLVQNEAGYLSLCDILTRAWLGNQYKGRAEVQRAWL 123

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               K   GLIALSG  +GD+G A+ +G  ++A   A  W  +FP  FYIE+QR       
Sbjct: 124  ---KECSGLIALSGGRMGDVGQALADGNLELARECAHHWESLFPGAFYIELQRSGADGDE 180

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +Q  + +A+ ++LP+VATHPIQF+   +F AHEVR CIAEGE L+N KR+K+FT EQ 
Sbjct: 181  LYVQAAMRLAAELDLPVVATHPIQFIAPEDFRAHEVRVCIAEGEQLANPKRVKRFTPEQY 240

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F +  EM + F D+P+A++NT+EIAKRCNL+LE GKP LP FPTP+ +++ DFLI +++ 
Sbjct: 241  FLSTDEMQQRFADVPAALENTLEIAKRCNLELELGKPYLPDFPTPEGMSLGDFLIQQAQQ 300

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL+KRLL LY DP   + ++  Y++RL +E  TII M F GYFLIV+DFI W K+N +PV
Sbjct: 301  GLEKRLLQLYPDPAEREKQRPTYEERLSWECNTIISMGFPGYFLIVADFINWGKHNGVPV 360

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYS+ ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + R+RVI YV
Sbjct: 361  GPGRGSGAGSLVAYSMGITDLDPLRYDLLFERFLNPERVSMPDFDVDFCQDNRERVIDYV 420

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            K +YG+ AVSQI TFGT+ AK  +RDVGRVL+L YS CD +SKLIPF P    TL  A+ 
Sbjct: 421  KQKYGRQAVSQIATFGTLGAKAVVRDVGRVLELPYSLCDGLSKLIPFNPADPWTLERALA 480

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +EP   ER +N+EEV+ LI+LA+ +EG+ R+VGMHAGGVLIAP KLI+FCPLY Q G   
Sbjct: 481  DEPAFRERYENDEEVKALIDLARPLEGLTRSVGMHAGGVLIAPGKLIDFCPLYAQPGPDA 540

Query: 541  -IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +SQYDKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  LPL+D+ +Y
Sbjct: 541  NAVSQYDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNADKRDFDIMALPLDDEASY 600

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG 657
             LL + NT AVFQLES+GMK +L+  +P  FE+IIA+++LYRPGP++  ++ +F  RKHG
Sbjct: 601  KLLCEGNTTAVFQLESRGMKELLRSLRPSTFEDIIAMLALYRPGPLESGMVVDFVNRKHG 660

Query: 658  EY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIE 716
                +Y  P  +  LS TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +
Sbjct: 661  RAEVDYFHPDLESTLSSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAK 720

Query: 717  HRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFF 776
            HR  FQ GA+K G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK H+ + F
Sbjct: 721  HRVLFQEGAVKKGHDPELAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAHHPAEF 780

Query: 777  MAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH----KKIR 832
            +AA L   MDDT+K++I  KDA+   G+ +LPP+IN S Y F P+ +S  +     + +R
Sbjct: 781  LAATLLSDMDDTDKVQIFWKDALAN-GVEVLPPDINASNYRFEPVKDSYTEKGLPPRTMR 839

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGA+KGTG++ +EAIV  RK G  FT+LFDF +R+D+  +N+R I +L+ +GAFD  +
Sbjct: 840  YGLGAVKGTGQAAVEAIVEARKQGGPFTSLFDFCRRVDRHQVNKRTIEALVRAGAFDSID 899

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            + R  L+ASI  A + AE+ ++  NQ SLF +DD+N++ E     KV  WS +  L +EK
Sbjct: 900  DNRAALLASIGAATEAAEQAERSANQSSLF-DDDSNDIVEG-EVAKVAPWSLQDRLRQEK 957

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIV 1010
              LGF  S H+F  +  E+R+F P  L+ L+ + S    +G+++ ++++ T RGK+L  +
Sbjct: 958  TALGFYFSGHLFDAWRDEVRRFAPTPLARLEASRSAQWFAGVLSAVRVRMTRRGKMLYAM 1017

Query: 1011 IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARI 1070
            +DD S  +EV I N+L+E+++  LKE++L+I+ GKV  D +   +RINA+ IFD+ +AR 
Sbjct: 1018 LDDGSAQLEVAIFNELFEEHRQRLKEDQLVIIQGKVSNDDYTGGLRINADAIFDLQLARE 1077

Query: 1071 LYGKKFSVMFNRTFNISILKKILL--RFKCKNGLP 1103
                  S+  N   +   L  +L   R + + G+P
Sbjct: 1078 ARASCLSIGLNHHADAQRLHSLLAPHRAQEQGGVP 1112


>gi|337279151|ref|YP_004618623.1| DNA polymerase III subunit alpha, DnaE subfamily [Ramlibacter
            tataouinensis TTB310]
 gi|334730228|gb|AEG92604.1| Candidate DNA polymerase III alpha subunit, DnaE subfamily
            [Ramlibacter tataouinensis TTB310]
          Length = 1174

 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/1084 (52%), Positives = 762/1084 (70%), Gaps = 12/1084 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLRLHSE+S++DG  RI+D ++AAA D QPALAI+DL+NLFG IKFYK+A   G+K
Sbjct: 20   PMFVHLRLHSEFSVVDGTCRIDDTVQAAAADGQPALAISDLNNLFGAIKFYKAARGAGVK 79

Query: 63   PIIGCDVWITN-EIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            P+ G +V +     E    SR++LLV+N  GYL LCELL++A+ +N+   +A  +++WL+
Sbjct: 80   PVAGAEVVLQGLGTEPTALSRIVLLVQNRQGYLNLCELLARAWTQNVVKAQAVCKLDWLK 139

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            +    +GLIALSGA  G +G A+  G    A   A   + +FP  FY+E+QR  +P+   
Sbjct: 140  E--LGEGLIALSGAQAGAVGQALVQGDTARASQCALALASVFPHRFYLELQRAGRPDDEA 197

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +   + +A+++ LP+VATHP+QFL + ++ AHE R CIAEGEIL N +R++KFT+EQ F
Sbjct: 198  HVAAAVQLAAHLQLPVVATHPVQFLAEDDYEAHEARVCIAEGEILGNQRRVRKFTREQYF 257

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            K  ++M++LF D+PSAI NT+EIA+RC+L LE GKP+LP FPTP  + I ++    S  G
Sbjct: 258  KPAAQMVQLFADVPSAIANTLEIARRCSLVLELGKPRLPHFPTPNGMPIEEYFRFASHEG 317

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            LK+R+L LY D    + E  RY +RL+FEI TI+KM F GYFLIV DFI WAKNN  PVG
Sbjct: 318  LKERMLQLYPDAARREQEMPRYVERLEFEISTILKMGFPGYFLIVGDFINWAKNNGCPVG 377

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP+R+SMPDFDIDFC   RDRVI+YVK
Sbjct: 378  PGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPDRVSMPDFDIDFCQSNRDRVIEYVK 437

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
             +YG+DAVSQI TFGTMAA+ AIRDVGRVLD+ Y+FCD ISKLIP KPG+ IT+  A+K 
Sbjct: 438  QKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGQHITIDGALKV 497

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EP LAER++ E+EV+ L+ LA+++EG+ RNVGMHAGGVLIAP KL +F PLY+Q G    
Sbjct: 498  EPLLAERLEKEDEVKTLLGLAQKLEGLTRNVGMHAGGVLIAPGKLTDFTPLYQQPGSDAA 557

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQYDKDD+E  GL+KFDFLGL TL+IL+    FI+  +    +FS   +PL D  TY L
Sbjct: 558  VSQYDKDDVEAAGLVKFDFLGLATLTILEIAKEFIRARHKGREDFSFENVPLQDAATYKL 617

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
                 T AVFQ ES+GM+ ML++A+P   E++IAL +LYRPGPMDLI +F  RKHG E  
Sbjct: 618  FADGKTEAVFQFESRGMQGMLRDARPTRLEDLIALNALYRPGPMDLIPSFVARKHGREQV 677

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             YP P   ++LSETYGIMVYQEQVMQ AQILGGY+LG ADLLRRA+GKKK  EM +HR+ 
Sbjct: 678  EYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYTLGGADLLRRAMGKKKAEEMAQHREI 737

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F+ GA K G+ + KA+EIF+ +EKFAGYGFNKSHA AY+LL+Y+T +LK HY++ F  AN
Sbjct: 738  FRAGAAKNGIGQEKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHYTAEFFCAN 797

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +++ MDDT+K+K+L +DA+K  GLS  PP++N   Y F P+  SD   K IRYGLGA+KG
Sbjct: 798  MTVEMDDTDKLKVLFEDAVKNFGLSFEPPDVNRGVYRFEPV--SD---KVIRYGLGAVKG 852

Query: 841  TGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ IEAIV  R + G F +L+DF  R+D+  IN+R + +L+ +GAFD     R  LVA
Sbjct: 853  TGQAAIEAIVRAREEEGPFKSLYDFCCRVDRTRINKRTVEALVKAGAFDSLQLNRAALVA 912

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLK-EYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            SID A + A   +   NQ  LF   D +    +    V+   W  K+ L  EK  +GF L
Sbjct: 913  SIDRAFEFASVCEANANQGGLFDMGDAHGASTQEPELVEAMPWGVKERLTFEKTAVGFYL 972

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSNS 1017
            S H+F     E+R+F  + + +L  +     V+GI+++ ++    RGK+ +  +DD S +
Sbjct: 973  SGHLFDEVAAEVRRFAKLRIDDLIDSREPQLVAGIVSDFRVINGQRGKLALFKLDDKSAT 1032

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +E   +  +   ++++LK++EL+IV  K   DRF   +R+N ++++D+  AR  +GK   
Sbjct: 1033 IEATADEAVINAHRHLLKDDELVIVMAKAQPDRFSGGVRLNVQQVWDLATARCRFGKYLK 1092

Query: 1078 VMFN 1081
            V  N
Sbjct: 1093 VAVN 1096


>gi|124267439|ref|YP_001021443.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1]
 gi|124260214|gb|ABM95208.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
          Length = 1174

 Score = 1182 bits (3059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1098 (52%), Positives = 768/1098 (69%), Gaps = 22/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR H+EYS++DG+LR++D++ AAA D QPALAITDLSNLFG IKFY +A  KG++
Sbjct: 5    PSFVHLRTHTEYSVVDGMLRVDDMVAAAAADEQPALAITDLSNLFGAIKFYGAARGKGVQ 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D+W+  E + K+PSRLLLLV+N  GYL LCEL+S A+ EN+   R +  + W + 
Sbjct: 65   PLIGADLWLEAESDEKQPSRLLLLVQNRTGYLNLCELISHAWTENLQ--RHQACVAWPQL 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K+ DGLIALSGA LG +G+A+  G    AE  A R + +FP  FY+E+QR  Q     Q
Sbjct: 123  AKHGDGLIALSGADLGAVGLALLAGDAVRAEAQALRLAALFPGRFYLELQRAGQAGNEAQ 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            ++  + +A+ + LP+VATHP+QFL   +F AHE R CIAEGE L+N +R+K+FT+EQ+FK
Sbjct: 183  VRAVVPLAAKLGLPVVATHPVQFLSADDFEAHEARVCIAEGETLTNPRRVKRFTREQHFK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP----KNININDFLISKS 298
            T ++M++LF DIPSAI NT+ IA+RC+L L  GKP+LP FPTP    + +  +D+    S
Sbjct: 243  TAAQMVELFADIPSAIANTLAIARRCHLTLTLGKPQLPDFPTPIVDGQRMAPDDYFRHAS 302

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
              GL +RL  LY + +  +  + RY +RL FEIETI+KM F GYFLIV+DFI WAK N  
Sbjct: 303  HAGLNERLAQLYPNEDERERHRARYVERLDFEIETILKMGFPGYFLIVADFINWAKGNGC 362

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL+YNLLFERFLNP+R+SMPDFDIDFC   RDRVI 
Sbjct: 363  PVGPGRGSGAGSLVAYALKITDLDPLAYNLLFERFLNPDRVSMPDFDIDFCQGNRDRVID 422

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN- 477
            YVK +YG+DAVSQI TFGTMAAK A+RDVGRVL + Y   DSI+KL+P  PGK +TL   
Sbjct: 423  YVKQKYGRDAVSQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLVPAPPGKTVTLKRP 482

Query: 478  ----------AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLI 527
                      A KE P++ +R + EEEV +L+ LA++VEG +RN+GMHAGGVLIAP K+ 
Sbjct: 483  GDRPDPGLIYARKEAPEIEQREQKEEEVAELLALAERVEGTVRNIGMHAGGVLIAPGKIT 542

Query: 528  NFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS 587
            +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI+  +    +F+
Sbjct: 543  DFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKDFIRTRHADRADFA 602

Query: 588  LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
               + L+D+ TY LL +  TVAVFQLES+GM+ ML+EA+P  FE+IIAL++LYRPGPMDL
Sbjct: 603  FENIALDDRKTYQLLSEGKTVAVFQLESRGMQGMLREARPSVFEDIIALVALYRPGPMDL 662

Query: 648  IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            I +FC RKHG E  +YP P  ++VL ETYGIMVYQEQVMQ+AQ LGGYSLG ADLLRRA+
Sbjct: 663  IPSFCARKHGKEEVDYPHPLMREVLEETYGIMVYQEQVMQVAQRLGGYSLGGADLLRRAM 722

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM +HR  F  GA K G+    ANEIF+ +EKFAGYGFNKSHA AYALL+Y+TA
Sbjct: 723  GKKKAEEMAKHRVIFAEGAAKNGIGAGLANEIFDLMEKFAGYGFNKSHAAAYALLAYHTA 782

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            + K HY + F AAN+S+++DDT+K+KI   DA+ + G+    P++N   Y F P+     
Sbjct: 783  WAKVHYLAEFTAANMSVALDDTDKLKIFHDDAV-SLGVVFEAPDVNAGGYRFEPVAPQGK 841

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            +  ++RYGLGAIKGTG+  IEAIV   R+ G + +LFDF  R+D+  +N+R++ +LI  G
Sbjct: 842  ERGRVRYGLGAIKGTGQGAIEAIVDARREGGPYKSLFDFAARVDRSRVNKRVVEALIKGG 901

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK-NDDNNNLKEYLNYVKVPSWSKK 944
            AFD     R +L+AS+ +A + A+      +Q  LF   D +       + V   +WS K
Sbjct: 902  AFDALEADRAVLMASVPLAFEYADTQAANADQGGLFDFGDSHAASTNEPDLVATEAWSIK 961

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYR 1003
            + L  EK  LGF LS H+F   ETE+RQF    +++L  +     ++GI+TEL++    R
Sbjct: 962  ERLTHEKAALGFYLSGHLFDECETEVRQFARRRIADLLDSREPQLLAGIVTELRVVNGQR 1021

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
            G++ I  +DD S ++E + N  L   ++  L E+E ++V GKV  DRF   +R+N ++++
Sbjct: 1022 GRVAIFKLDDKSETIEAVANEDLLNAHREQLVEDEFIVVQGKVQPDRFSGGVRLNVQQVW 1081

Query: 1064 DINVARILYGKKFSVMFN 1081
            D+  AR  +G+   V  N
Sbjct: 1082 DLAAARCRFGRYLRVAVN 1099


>gi|311105199|ref|YP_003978052.1| DNA polymerase III subunit alpha 1 [Achromobacter xylosoxidans A8]
 gi|310759888|gb|ADP15337.1| DNA polymerase III, alpha subunit 1 [Achromobacter xylosoxidans A8]
          Length = 1164

 Score = 1176 bits (3042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1115 (50%), Positives = 782/1115 (70%), Gaps = 18/1115 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSE+S++DGL+RI D+I+  A   QPA+A+TDLSNLFG+IKFYK A   GIK
Sbjct: 10   PPFVHLRVHSEFSVVDGLVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGIK 69

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVW++N+ +  KP RLLLLV+N+ GYL LCELLSKA++ N   GRAEIR EWL+ 
Sbjct: 70   PIAGCDVWLSNDDDPAKPFRLLLLVRNHQGYLNLCELLSKAFLTNQGKGRAEIRREWLQG 129

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q+GLIALSG   GD+G A+  G    A   AR+W+ +FP ++YIE+QR         
Sbjct: 130  ---QEGLIALSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSYYIELQRAGMDGDEAY 186

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             Q  + +AS   LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R+++F+KEQ   
Sbjct: 187  TQAALRLASEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILANPRRVRRFSKEQYLL 246

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM + F D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP+ + ++D+L+  S+ GL
Sbjct: 247  SSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPEGVGLDDYLVQLSEEGL 306

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KR+  L+ D    + ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGP
Sbjct: 307  EKRMEFLFPDAAERESKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGP 366

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK+
Sbjct: 367  GRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKE 426

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG+ AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    TL   +K+E
Sbjct: 427  KYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWTLERTLKDE 486

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGI 541
            P   +R + EEEVR L++LAK +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     
Sbjct: 487  PAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSA 546

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +
Sbjct: 547  VSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDFDVMALALDDPAAYKI 606

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE- 658
            L  ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG  
Sbjct: 607  LCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRA 666

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y     +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR
Sbjct: 667  AVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHR 726

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK ++ + F+A
Sbjct: 727  ELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHPTEFLA 786

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYG 834
            A +S  MDDT+K++I  +DA +  G+ +LPP++N S Y F P+++   K+ K    +RYG
Sbjct: 787  ATMSSDMDDTDKVQIFCRDA-QDNGVEVLPPDVNFSGYRFEPVVDKHTKNGKPPRTMRYG 845

Query: 835  LGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KGTG+  +E I+  RK G  F NLFDF +R+ K+ +NRR I +LI +GAFD     
Sbjct: 846  LGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKQAVNRRTIEALIKAGAFDTIEPN 905

Query: 894  RYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
            R  ++AS+  A++ AE+  +  NQ SLF +D  + +   L   KV  W   ++L EEK  
Sbjct: 906  RAAMLASVPTAMEAAEQAARSANQASLFGDDSGDVVAGEL--AKVAPWDLHKKLTEEKSA 963

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVID 1012
            LG+  S H+F  +  E+R+ +P+ L  ++P      + G++  +++  T RGK++  V+D
Sbjct: 964  LGYYYSGHLFDAWRDEVRRIVPMQLVRVEPQRDLQWMCGVLASVRVMMTRRGKMVFAVLD 1023

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  VE+ + N+LYEK++N L+E++L+IV GKV  D +   +RI AE+++D+ +AR   
Sbjct: 1024 DGTAQVEISVFNELYEKHRNRLREDQLVIVQGKVSNDDYSGGMRIVAEQLYDLQLAREAR 1083

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
             K   V  N + + + L+++L  F+   +NG+P V
Sbjct: 1084 AKSLRVKLNGSADAARLRQMLNPFRAEPENGIPGV 1118


>gi|332528539|ref|ZP_08404527.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624]
 gi|332042050|gb|EGI78388.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624]
          Length = 1178

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/1098 (51%), Positives = 765/1098 (69%), Gaps = 27/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F HLRLH+E+S++DG  R++DV+  AA D QPALAITDL+NLFG IKFYK+A  KG+K
Sbjct: 4    PSFAHLRLHTEFSVVDGATRVDDVVATAAKDGQPALAITDLNNLFGAIKFYKAARGKGVK 63

Query: 63   PIIGCDVWITN-EIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            P+IG D+ +     +    SRLLLLV+N  GYL L ELL++A+  N++  +A +++ WL+
Sbjct: 64   PVIGADIVLEGLGTDPLATSRLLLLVQNKQGYLNLSELLARAWTGNVHKAQAIVKLAWLK 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            +    +GLI LSGA  G +G A+  G    A + A +++ +FP  FY+E+QR  + +   
Sbjct: 124  E--LHEGLIVLSGAQTGAVGQALVQGDTARAHDLALQFATLFPHRFYLELQRAGRADDEV 181

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +   + +A+ + LP+VATHP+QFL + ++ AHE R CIAEGEIL N +R++KFTKEQ F
Sbjct: 182  HVNAAVQLAARLKLPVVATHPVQFLTEEDYEAHEARVCIAEGEILGNPRRVRKFTKEQYF 241

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            K+ ++M  LF D+PSA+ NT+EI KRCNL L  GKP+LP FP P  +++ D+    S  G
Sbjct: 242  KSAAQMQALFADLPSALANTLEIGKRCNLTLVLGKPQLPNFPIPGGLSMEDYFRKVSLEG 301

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L++RL +LY +P     E+ RY +RL+FEI TI+KM F GYFLIV DFIQWAK N  PVG
Sbjct: 302  LEERLSHLYPEPAKRDAERPRYLERLEFEINTILKMGFPGYFLIVGDFIQWAKANGCPVG 361

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DPL+Y LLFERFLNP R+SMPDFDIDFC   RDRVI+YVK
Sbjct: 362  PGRGSGAGSLVAYALKITDLDPLAYKLLFERFLNPERVSMPDFDIDFCQANRDRVIEYVK 421

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            +RYG++AVSQI TFGTMAA+ AIRDVGRV+D+ Y+FCD ISKLIP KPG+ IT+  AIKE
Sbjct: 422  ERYGREAVSQIATFGTMAARAAIRDVGRVMDMSYTFCDGISKLIPNKPGQHITIDGAIKE 481

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
             P+LAER   E+EV+ L+ELA+++EG+ RNVGMHAGGVLIAP KL +FCPLY+Q G    
Sbjct: 482  VPELAERQAKEDEVKNLLELAQKLEGMTRNVGMHAGGVLIAPGKLTDFCPLYQQPGSDAA 541

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQYDKDD+E +GL+KFDFLGL TL+IL+    FI K +    +FS   +PL+DK TY L
Sbjct: 542  VSQYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHPGQEHFSFEAIPLDDKATYQL 601

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
             +   T AVFQ ES+GM+ ML++AKP   E++IAL +LYRPGPMDLI +F  RKHG E  
Sbjct: 602  FQDGKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDLIPSFVARKHGREEI 661

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             YP P   D+LSETYGIMVYQEQVMQ AQILGGYSLG ADLLRRA+GKKK  EM +HR+ 
Sbjct: 662  EYPHPLVADMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAMGKKKAEEMAQHREI 721

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F+ GA + G+++ KA+EIF+ +EKFAGYGFNKSHA AY+LL+Y+TA+LK HY++ F  AN
Sbjct: 722  FRKGAAQNGIAQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTAWLKVHYTAEFFCAN 781

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +++ MDDT+K+K+L +DA K  G+   PP++N   Y F P+ ++      IRYGLGA+KG
Sbjct: 782  MTVEMDDTDKLKVLFEDAQK-MGMHFEPPDVNRGHYRFEPVSDT-----VIRYGLGAVKG 835

Query: 841  TGKSTIEAIVTER----------KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
            TG+  IEAIV  R          + G F +L+DF KR+D+  IN+R + +LI +GAFD  
Sbjct: 836  TGQQAIEAIVAAREGRGEGPAGSECGPFKSLYDFCKRVDRARINKRTVEALIKAGAFDSL 895

Query: 891  NEKRYMLVASIDVALKNAEKTKKFINQLSLFK------NDDNNNLKEYLNYVKVPSWSKK 944
            +  R  L+AS D A   A  T    NQ  LF        D + +  +    V+   W  K
Sbjct: 896  HLNRAELLASTDRAFDFAAATAANANQGGLFDLMADDGGDSHGSSTQEPELVEALPWGVK 955

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYR 1003
            + L  EK  +GF  S H+F     E+R+F    L+EL  T     ++GI+++L++    R
Sbjct: 956  ERLSHEKTAVGFYFSGHLFDEVAHEVRRFAKRELAELIDTREPQLLAGIVSDLRVINGQR 1015

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
            G++ +  +DD S  ++  ++  L   NKN+LK++EL++V+ KV+ DRF   +++N  +++
Sbjct: 1016 GRLALFKLDDKSAVLDARVDEALLNANKNLLKDDELIVVTAKVMPDRFSGGLQLNVTQLW 1075

Query: 1064 DINVARILYGKKFSVMFN 1081
             +  AR  +GK  SV  N
Sbjct: 1076 SLEAARCRFGKYLSVAVN 1093


>gi|163857430|ref|YP_001631728.1| DNA polymerase III subunit alpha [Bordetella petrii DSM 12804]
 gi|163261158|emb|CAP43460.1| DNA polymerase III, alpha subunit [Bordetella petrii]
          Length = 1163

 Score = 1173 bits (3035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1115 (49%), Positives = 780/1115 (69%), Gaps = 18/1115 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSE+S++DG++RI D+I+  A   QPA+A+TDLSN+FG+IKFYK A   G+K
Sbjct: 9    PAFVHLRVHSEFSVVDGIVRIPDLIKRVAQLGQPAVALTDLSNIFGLIKFYKGARGAGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVW+TN+ + +KP RLLLLV+N+ GYL LCELL+++++EN   GRAEIR EWL+ 
Sbjct: 69   PIAGCDVWLTNDDDPEKPFRLLLLVRNHQGYLNLCELLTRSFLENQGRGRAEIRREWLQG 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +   GLI LSG   GDIG A+  G    A   AR+W  +FP  FYIE+QR         
Sbjct: 129  RQ---GLIVLSGGRAGDIGHALDAGNAVTALALARQWGALFPGAFYIELQRAGADGDEAY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             Q  + +A+   LP+VATHP+QFL  +E+ AHE R CIA+GEIL++ +R+++FTK+Q   
Sbjct: 186  TQAAMRLAAEAGLPVVATHPVQFLDASEYQAHEARVCIAQGEILADPRRVRRFTKDQYLL 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM + F D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP  I+++D+L+  S+ GL
Sbjct: 246  STEEMARRFADVPSALANTVEIAKRCNLTLVLGKPRLPNFPTPDGISLDDYLVQLSEEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ DP     ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGP
Sbjct: 306  EKRLEFLFPDPAERDAKRAQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK 
Sbjct: 366  GRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKM 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG++AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    +L   +K+E
Sbjct: 426  KYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDGLSKLIPFNPADPWSLDRTLKDE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGI 541
            P   ER + EEEVR L++LA+ +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     
Sbjct: 486  PAFKERYEQEEEVRALVDLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSA 545

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  LPL+D   Y +
Sbjct: 546  VSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRRFNESKRDFDIMALPLDDPAAYKV 605

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGEY 659
            L  ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG  
Sbjct: 606  LCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRA 665

Query: 660  -FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P  +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR
Sbjct: 666  TVDYFHPDLEATLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHR 725

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + F+ GA + G   + A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK ++ + F+A
Sbjct: 726  ELFEKGAKEKGHDPNLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPTEFLA 785

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH----KKIRYG 834
            A +S  MDDT+K+++  +DA +  G+ +LPP++N S Y F P+ +   +     + +RYG
Sbjct: 786  ATISSDMDDTDKVQVFCRDA-QDNGVLVLPPDVNASGYRFEPVADEHTREGRPPRTMRYG 844

Query: 835  LGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KGTG+  +E I+  R+  G F NLFDF +R++K  +NRR I +LI +GAFD     
Sbjct: 845  LGAVKGTGQGAVEEILRAREADGPFANLFDFCRRVNKHAVNRRTIEALIKAGAFDTIEPN 904

Query: 894  RYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
            R  ++AS+  A++ AE+  +  NQ+SLF +D  + +   L+  KV  W+   +L EEK  
Sbjct: 905  RAAMLASVGTAMEAAEQAARSANQVSLFGDDSGDVVAGELS--KVAPWNLHTKLTEEKSA 962

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVID 1012
            LGF  S H+F  +  E+R+ +P+ L+ ++P      + G++  ++   T RGK++  V+D
Sbjct: 963  LGFYFSGHLFDHWRDEVRRIVPMPLARVEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLD 1022

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  VE+ + N+LYEK++  L+E++LLIV GKV  D +   +RI AE+++D+ +AR   
Sbjct: 1023 DGTAQVEISVFNELYEKHRARLREDQLLIVQGKVSNDDYSGGMRIVAEQLYDLQLAREAR 1082

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
             +   V  N   +   L+++L  F+   +NG+P V
Sbjct: 1083 ARSLRVRLNGQADAGRLRQLLNPFRAEPENGVPGV 1117


>gi|423016665|ref|ZP_17007386.1| DNA polymerase III subunit alpha [Achromobacter xylosoxidans AXX-A]
 gi|338780334|gb|EGP44746.1| DNA polymerase III subunit alpha [Achromobacter xylosoxidans AXX-A]
          Length = 1163

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1113 (50%), Positives = 778/1113 (69%), Gaps = 18/1113 (1%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI D+I+  A   QPA+A+TDLSNLFG+IKFYK A   GIKPI
Sbjct: 11   FVHLRVHSEFSVVDGLVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGIKPI 70

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             GCDVW++N+ +  KP R+LLLV+N+ GYL LCELLS++++ N   GRAEIR EWL+   
Sbjct: 71   AGCDVWLSNDDDPSKPFRVLLLVRNHQGYLNLCELLSRSFLTNQGKGRAEIRREWLQG-- 128

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
             QDGLI LSG   GD+G A+  G    A   AR+W+ +FP ++YIE+QR          Q
Sbjct: 129  -QDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSYYIELQRAGMDGDEAYTQ 187

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+   LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R+++FTKEQ   + 
Sbjct: 188  AAMRLAAEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEILANPRRVRRFTKEQYLLSS 247

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM + F D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP+ ++++D+L+  S+ GL+K
Sbjct: 248  EEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPEGVSLDDYLVQLSEEGLEK 307

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            R+  L+ D    + ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGPGR
Sbjct: 308  RMAFLFPDSAERESKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGPGR 367

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK++Y
Sbjct: 368  GSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKEKY 427

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+ AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    TL   +KEEP 
Sbjct: 428  GRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWTLERTLKEEPA 487

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGIIS 543
              +R + EEEVR L++LAK +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     +S
Sbjct: 488  FKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQAGQENSAVS 547

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
            Q+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +L 
Sbjct: 548  QFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNADKRDFDVMALALDDPAAYKILC 607

Query: 604  KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE-YF 660
             ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG    
Sbjct: 608  DANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRAAV 667

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
            +Y     +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR+ 
Sbjct: 668  DYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHREL 727

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK ++ + F+AA 
Sbjct: 728  FEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHPTEFLAAT 787

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPI----IESDGKHKKIRYGLG 836
            +S  MDDT+K++I  +DA +  G+ +LPP++N S Y F P+     E     + +RYGLG
Sbjct: 788  MSSDMDDTDKVQIFCRDA-QDNGVEVLPPDVNFSGYRFEPVADRYTEKGKPPRTMRYGLG 846

Query: 837  AIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            A+KGTG+  +E I+  RK G  F NLFDF +R+ K  +NRR I +LI +GAFD     R 
Sbjct: 847  AVKGTGQGAVEDILRARKEGGPFQNLFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPNRA 906

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
             ++AS+  A++ AE+  +  NQ SLF +D ++ +   L   KV  W   ++L EEK  LG
Sbjct: 907  AMLASVPTAMEAAEQAARSANQSSLFGDDSSDVVAGEL--AKVAPWDLHKKLTEEKSALG 964

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDN 1014
            +  S H+F  +  E+RQ +P+ L+ ++P      + G++  +++  T RGK++  V+DD 
Sbjct: 965  YYYSGHLFDAWRDEVRQIVPMQLARVEPQRDLQWMCGVLASVRVMMTRRGKMVFAVLDDG 1024

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            +  VE+ + N+LYEK++N L+E++L+IV GKV  D +   +RI AE+++D+ +AR    K
Sbjct: 1025 TAQVEISVFNELYEKHRNRLREDQLVIVQGKVSNDDYSGGMRIVAEQLYDLQLAREARAK 1084

Query: 1075 KFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
               V  N   + + L+++L  F+   +NG+P V
Sbjct: 1085 SLRVKLNGGADAARLRQMLNPFRAEPENGIPGV 1117


>gi|421483877|ref|ZP_15931449.1| DNA polymerase III subunit alpha [Achromobacter piechaudii HLE]
 gi|400197584|gb|EJO30548.1| DNA polymerase III subunit alpha [Achromobacter piechaudii HLE]
          Length = 1163

 Score = 1171 bits (3029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1113 (50%), Positives = 780/1113 (70%), Gaps = 18/1113 (1%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DG++RI+D+I+  A   QPA+A+TDLSNLFG+IKFYK A   G+KPI
Sbjct: 11   FVHLRVHSEFSVVDGIVRISDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGVKPI 70

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             GCDVW+TN+ +  KP RLLLLV+N+ GYL LCELLSKA++ N   GRAEIR EWL+   
Sbjct: 71   AGCDVWLTNDDDPAKPFRLLLLVRNHQGYLNLCELLSKAFLTNQGKGRAEIRREWLQG-- 128

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
             Q+GLIALSG  +GD+G A+  G    A   AR+W+ +FP ++YIE+QR          Q
Sbjct: 129  -QEGLIALSGGRMGDVGQALDAGNAVSALALARQWAHLFPGSYYIELQRAGMDGDEAYTQ 187

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A    LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R+++FTKEQ   + 
Sbjct: 188  AAMRLAGEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEILANPRRVRRFTKEQYLLSS 247

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM + F D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP  + ++D+L+  S+ GL+K
Sbjct: 248  EEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPDGVTLDDYLVQLSEEGLEK 307

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            R+  L+ +    + ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGPGR
Sbjct: 308  RMAFLFPNEAERESKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGPGR 367

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK++Y
Sbjct: 368  GSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKEKY 427

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+ AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    TL   +K+EP 
Sbjct: 428  GRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWTLERTLKDEPA 487

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGIIS 543
              +R + EEEVR L++LAK +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     +S
Sbjct: 488  FKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSAVS 547

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
            Q+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +L 
Sbjct: 548  QFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDFDVMALELDDPAAYKILC 607

Query: 604  KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE-YF 660
             ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG    
Sbjct: 608  DANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRAAV 667

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
            +Y     +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR+ 
Sbjct: 668  DYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHREL 727

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK ++ + F+AA 
Sbjct: 728  FEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHPTEFLAAT 787

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYGLG 836
            +S  MDDT+K++I  +DA +  G+ +LPP++N S + F P+ +   +  K    +RYGLG
Sbjct: 788  MSSDMDDTDKVQIFCRDA-QDNGVEVLPPDVNFSGFRFEPVADKHTEKGKPPRTMRYGLG 846

Query: 837  AIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            A+KGTG+  +E I+  RK G  F NLFDF +R+ K+ +NRR I +LI +GAFD     R 
Sbjct: 847  AVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVGKQAVNRRTIEALIKAGAFDTIEPNRA 906

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
             ++AS+  A++ AE+  +  NQ SLF +D  + +   L   KV  W   ++L EEK  LG
Sbjct: 907  AMLASVPTAMEAAEQAARSANQASLFGDDSGDVVAGEL--AKVAPWDLHKKLTEEKSALG 964

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDN 1014
            +  S H+F  +  E+R+ +P+ L+ ++P      + G++  +++  T RGK++  V+DD 
Sbjct: 965  YYYSGHLFDAWRDEVRRIVPMQLARVEPQRDLQWMCGVLASVRVMMTRRGKMVFAVLDDG 1024

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            +  VE+ + N+LYEK++N L+E++L+IV GKV  D +   +RI AE+++D+ +AR    K
Sbjct: 1025 TAQVEISVFNELYEKHRNRLREDQLVIVQGKVSNDDYSGGMRIVAEQLYDLQLAREARAK 1084

Query: 1075 KFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
               V  N T + + L+++L  F+   +NG+P V
Sbjct: 1085 SLRVKLNGTADAARLRQMLNPFRAEPENGIPGV 1117


>gi|222111091|ref|YP_002553355.1| DNA polymerase III subunit alpha [Acidovorax ebreus TPSY]
 gi|221730535|gb|ACM33355.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY]
          Length = 1179

 Score = 1168 bits (3021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1106 (50%), Positives = 758/1106 (68%), Gaps = 36/1106 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V++AAA D QPALAITDL+NLFG IKFYK    KG+KPI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++++  E     PSR++LLV+N  GYL L ELL++A+  NI   +A    EWL++  
Sbjct: 62   LGAEIYLEGEAAGA-PSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQALCTWEWLQE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              DGLIAL+GA  G +G A+  G +  A   A R + IFP  FY+E+QR  +P+    + 
Sbjct: 119  LGDGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRAGRPDDEAHVT 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ + LP+VATHP+QF    ++ AHE R CIAEGEIL+N +R+++FT+EQ FK+ 
Sbjct: 179  AAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRRFTREQYFKSS 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSA+ NT+E+AKRCN+ L  GKP+LP FP P  + +  +    S  GL++
Sbjct: 239  AEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGMTMEQYFRHASHEGLEE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RLL+LY D      ++ RY++RL+FE+ TI+KM F GYFLIV DFIQWAK N  PVGPGR
Sbjct: 299  RLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFIQWAKKNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVKD+Y
Sbjct: 359  GSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQANRDRVIDYVKDKY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GK+AVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD ISKL+P KPG+  TL+        
Sbjct: 419  GKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQTYTLAYPPEPKKE 478

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP L ER++ EE+VR +IE+A+++EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 479  GDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI + +    NF+   +
Sbjct: 539  LYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMQRHKGQENFAFENI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI +F
Sbjct: 599  PLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPSF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 659  VNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR  F+ GA + G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  AEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA+K  G++  PP+IN   Y F P+ +     K 
Sbjct: 779  HYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNYRFEPVTD-----KV 833

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEAI+  R+           G F +LFDF  R+D+  +N+R + +
Sbjct: 834  IRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRTRVNKRTVEA 893

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD     R  LVAS+D A + A       NQ  LF    +D   +  +  + V 
Sbjct: 894  LIKAGAFDALQLNRAALVASLDRAFEFANAQIANANQGGLFDMMGDDAIGSSTQEPDLVD 953

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITEL 996
            V  W  K+ L++EK  +GF LS H+F     E+R+F+   + EL  +     V+GI+++ 
Sbjct: 954  VMPWGIKERLMQEKTAVGFYLSGHLFDEVHQEVRRFVRTAIDELVDSRETQVVAGIVSDY 1013

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++    RG++ +  +DD S  +E   +  L   N  +LK++E ++VSG++  D F   +R
Sbjct: 1014 RVINGQRGRLALFKLDDKSGVIEASADEGLINANAGLLKDDEFVVVSGRLQLDHFSGGLR 1073

Query: 1057 INAEKIFDINVARILYGKKFSVMFNR 1082
            +  ++++D+  AR  YG+   V   +
Sbjct: 1074 MKVQQVWDLAGARARYGRYLQVCLGQ 1099


>gi|359798691|ref|ZP_09301262.1| DNA polymerase III subunit alpha [Achromobacter arsenitoxydans SY8]
 gi|359363513|gb|EHK65239.1| DNA polymerase III subunit alpha [Achromobacter arsenitoxydans SY8]
          Length = 1165

 Score = 1168 bits (3021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1113 (50%), Positives = 778/1113 (69%), Gaps = 18/1113 (1%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DG +RI D+I+  A   QPA+A+TDLSNLFG+IKFYK A   G+KPI
Sbjct: 13   FVHLRVHSEFSVVDGTVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGVKPI 72

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             GCDVWITN+ +  KP RLLLLV+N+ GYL LCELLSK+++ N   GRAEIR EWL+   
Sbjct: 73   AGCDVWITNDEDPAKPFRLLLLVRNHQGYLNLCELLSKSFLTNQGKGRAEIRREWLQG-- 130

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
             Q+GLIALSG   GD+G A+  G    A   AR+W+ +FP ++YIE+QR          Q
Sbjct: 131  -QEGLIALSGGRAGDVGQALDAGNAVSALALARQWALLFPGSYYIELQRAGMDGDEGYCQ 189

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+   LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R+++F+KEQ   + 
Sbjct: 190  AAMRLAAEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILANPRRVRRFSKEQYLLSS 249

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM + F D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP  + ++D+L+  S+ GL+K
Sbjct: 250  EEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPDGVTLDDYLVQLSEQGLEK 309

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            R+  L+ DP   + ++ +Y +RL++E +TII+M F GYFLIV DFI W K+N +PVGPGR
Sbjct: 310  RMEFLFPDPAERESKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKSNGVPVGPGR 369

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK++Y
Sbjct: 370  GSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKEKY 429

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+ AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    TL   +K+EP 
Sbjct: 430  GRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWTLERTLKDEPA 489

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGIIS 543
              +R + EEEVR L++LAK +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     +S
Sbjct: 490  FKDRYEQEEEVRSLVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSAVS 549

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
            Q+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +L 
Sbjct: 550  QFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDFDVMALALDDPAAYKILC 609

Query: 604  KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE-YF 660
             ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG    
Sbjct: 610  DANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRAAV 669

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
            +Y     +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR+ 
Sbjct: 670  DYFHSDLEATLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHREL 729

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK ++ + F+AA 
Sbjct: 730  FEKGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHPTEFLAAT 789

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYGLG 836
            +S  MDDT+K++I  +DA +  G+ +LPP++N S Y F P+ +   +  K    +RYGLG
Sbjct: 790  MSSDMDDTDKVQIFCRDA-QDNGVEVLPPDVNFSGYRFEPVADKHTEKGKPPRTMRYGLG 848

Query: 837  AIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            A+KGTG+  +E I+  RK  G F NLFDF +R+ K+ +NRR I +LI +GAFD     R 
Sbjct: 849  AVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKQAVNRRTIEALIKAGAFDTIEPNRA 908

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
             ++AS+  A++ AE+  +  NQ SLF +D  + +   L   KV  W   ++L EEK  LG
Sbjct: 909  AMLASVPTAMEAAEQAARSANQASLFGDDSGDVVAGEL--AKVAPWDLHKKLTEEKSALG 966

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDN 1014
            +  S H+F  +  E+R+ +P+ L  ++P      + G++  +++  T RGK++  V+DD 
Sbjct: 967  YYYSGHLFDAWRDEVRRIVPMQLVRVEPQRDLQWMCGVLASVRVMMTRRGKMVFAVLDDG 1026

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            +  VE+ + N+LYEK++N L+E++L+IV GKV  D +   +RI AE+++D+ +AR    K
Sbjct: 1027 TAQVEISVFNELYEKHRNRLREDQLVIVQGKVSNDDYSGGMRIVAEQLYDLQLAREARAK 1086

Query: 1075 KFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
               V  N + + + L+++L  F+   +NG+P V
Sbjct: 1087 SLRVKLNGSADAARLRQMLNPFRAEPENGIPGV 1119


>gi|422317792|ref|ZP_16399090.1| DNA polymerase III [Achromobacter xylosoxidans C54]
 gi|317407652|gb|EFV87591.1| DNA polymerase III [Achromobacter xylosoxidans C54]
          Length = 1163

 Score = 1167 bits (3020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/1113 (49%), Positives = 777/1113 (69%), Gaps = 18/1113 (1%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DG++RI D+I+  A   QPA+A+TDLSNLFG+IKFYK A   GIKPI
Sbjct: 11   FVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGIKPI 70

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             GCDVW++N+ +  KP R+LLLV+N+ GYL LCELLS+A++ N   GRAEIR EWL+   
Sbjct: 71   AGCDVWLSNDDDPAKPFRVLLLVRNHQGYLNLCELLSRAFLTNQGKGRAEIRREWLQG-- 128

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
             QDGLI LSG   GD+G A+  G    A   AR+W+ +FP ++YIE+QR          Q
Sbjct: 129  -QDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHMFPGSYYIELQRAGMDGDEAYTQ 187

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+   LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R+++F+KEQ   + 
Sbjct: 188  AAMRLAAEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEILANPRRVRRFSKEQYLLSS 247

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM + F D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP  ++++D+L+  S+ GL+K
Sbjct: 248  EEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPDGVSLDDYLVQLSEEGLEK 307

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            R+  L+ D      ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGPGR
Sbjct: 308  RMAFLFPDEAERASKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGPGR 367

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK++Y
Sbjct: 368  GSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKEKY 427

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+ AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    TL   +K+EP 
Sbjct: 428  GRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWTLERTLKDEPA 487

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGIIS 543
              +R + EEEVR L++LAK +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     +S
Sbjct: 488  FKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSAVS 547

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
            Q+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +L 
Sbjct: 548  QFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDFDVMALSLDDPAAYKILC 607

Query: 604  KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE-YF 660
             ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG    
Sbjct: 608  DANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRAAV 667

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
            +Y     +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR+ 
Sbjct: 668  DYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHREL 727

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK ++ + F+AA 
Sbjct: 728  FEKGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHPTEFLAAT 787

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYGLG 836
            +S  MDDT+K++I  +DA +  G+ +LPP++N S Y F P+ +   +  K    +RYGLG
Sbjct: 788  MSSDMDDTDKVQIFCRDA-QDNGVEVLPPDVNFSGYRFEPVADKHTEKGKPPRTMRYGLG 846

Query: 837  AIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            A+KGTG+  +E I+  RK G  F NLFDF +R+ K  +NRR I +LI +GAFD     R 
Sbjct: 847  AVKGTGQGAVEDILRARKEGGPFQNLFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPNRA 906

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
             ++AS+  A++ AE+  +  NQ SLF +D ++ +   L   KV  W   ++L EEK  LG
Sbjct: 907  AMLASVPTAMEAAEQAARSANQSSLFGDDSSDVVAGEL--AKVAPWDLHKKLTEEKSALG 964

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDN 1014
            +  S H+F  +  E+RQ +P+ L+ ++P      + G++  +++  T RGK++  V+DD 
Sbjct: 965  YYYSGHLFDAWRDEVRQIVPMQLARVEPQRDLQWMCGVLASVRVMMTRRGKMVFAVLDDG 1024

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            +  VE+ + N+LYEK++N L+E++L+IV GKV  D +   +RI AE+++D+ +AR    K
Sbjct: 1025 TAQVEISVFNELYEKHRNRLREDQLVIVQGKVSNDDYSGGMRIVAEQLYDLQLAREARAK 1084

Query: 1075 KFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
               V  N   + + L+++L  F+   +NG+P V
Sbjct: 1085 SLRVKLNGGADAARLRQMLNPFRAEPENGIPGV 1117


>gi|121594197|ref|YP_986093.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42]
 gi|120606277|gb|ABM42017.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42]
          Length = 1187

 Score = 1166 bits (3016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1106 (50%), Positives = 758/1106 (68%), Gaps = 36/1106 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V++AAA D QPALAITDL+NLFG IKFYK    KG+KPI
Sbjct: 10   FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 69

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++++  E     PSR++LLV+N  GYL L ELL++A+  NI   +A    EWL++  
Sbjct: 70   LGAEIYLEAEAAGA-PSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQALCTWEWLQE-- 126

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              DGLIAL+GA  G +G A+  G +  A   A R + IFP  FY+E+QR  +P+    + 
Sbjct: 127  LGDGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRAGRPDDEAHVT 186

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ + LP+VATHP+QF    ++ AHE R CIAEGEIL+N +R+++FT+EQ FK+ 
Sbjct: 187  AAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRRFTREQYFKSS 246

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSA+ NT+E+AKRCN+ L  GKP+LP FP P  + +  +    S  GL++
Sbjct: 247  AEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGMTMEQYFRHASHEGLEE 306

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RLL+LY D      ++ RY++RL+FE+ TI+KM F GYFLIV DFIQWAK N  PVGPGR
Sbjct: 307  RLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFIQWAKKNGCPVGPGR 366

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVKD+Y
Sbjct: 367  GSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQANRDRVIDYVKDKY 426

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GK+AVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD ISKL+P KPG+  TL+        
Sbjct: 427  GKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQTYTLAYPPEPKKE 486

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP L ER++ EE+VR +IE+A+++EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 487  GDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCP 546

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI + +    NF+   +
Sbjct: 547  LYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMQRHKGQENFAFENI 606

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI +F
Sbjct: 607  PLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPSF 666

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 667  VNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKK 726

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR  F+ GA + G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 727  AEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 786

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA+K  G++  PP+IN   Y F P+ +     K 
Sbjct: 787  HYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNYRFEPVTD-----KV 841

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEAI+  R+           G F +LFDF  R+D+  +N+R + +
Sbjct: 842  IRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRTRVNKRTVEA 901

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD     R  LVAS+D A + A       NQ  LF    +D   +  +  + V 
Sbjct: 902  LIKAGAFDALQLNRAALVASLDRAFEFANAQIANANQGGLFDMMGDDAIGSSTQEPDLVD 961

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITEL 996
            V  W  K+ L++EK  +GF LS H+F     E+R+F+   + EL  +     V+GI+++ 
Sbjct: 962  VMPWGIKERLMQEKTAVGFYLSGHLFDEVHQEVRRFVRTAIDELVDSRETQVVAGIVSDY 1021

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++    RG++ +  +DD S  +E   +  L   N  +LK++E ++VSG++  D F   +R
Sbjct: 1022 RVINGQRGRLALFKLDDKSGVIEASADEGLINANAGLLKDDEFVVVSGRLQLDHFSGGLR 1081

Query: 1057 INAEKIFDINVARILYGKKFSVMFNR 1082
            +  ++++D+  AR  YG+   V   +
Sbjct: 1082 MKVQQVWDLAGARARYGRYLQVCLGQ 1107


>gi|293604441|ref|ZP_06686848.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
 gi|292817318|gb|EFF76392.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
          Length = 1163

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1113 (49%), Positives = 776/1113 (69%), Gaps = 18/1113 (1%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DG++RI D+I+  A   QPA+A+TDLSNLFG+IKFYK A   G+KPI
Sbjct: 11   FVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGVKPI 70

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             GCDVW++N+ +  KP RLLLLV+N+ GYL LCELLSKA++ N   GRAEIR EWL+   
Sbjct: 71   AGCDVWLSNDDDPSKPFRLLLLVRNHQGYLNLCELLSKAFLTNQGKGRAEIRREWLQG-- 128

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
             Q GLIALSG  +GD+G A+  G    A   AR+W+ +FP ++YIE+QR          Q
Sbjct: 129  -QQGLIALSGGRMGDVGQALDAGNAVSALALARQWAHLFPGSYYIELQRAGMDGDEAYTQ 187

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A    LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R+++FTKEQ   + 
Sbjct: 188  AAMRLAGEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEILANPRRVRRFTKEQYLLSS 247

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM + F D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP  + ++D+L+  S+ GL+K
Sbjct: 248  EEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPDGVTLDDYLVQLSEEGLEK 307

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            R+  L+ +    + ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGPGR
Sbjct: 308  RMAFLFPNEAEREAKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGPGR 367

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK++Y
Sbjct: 368  GSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKEKY 427

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+ AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    +L   +K+EP 
Sbjct: 428  GRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWSLERTLKDEPA 487

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGIIS 543
              +R + EEEVR L++LAK +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     +S
Sbjct: 488  FKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSAVS 547

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
            Q+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +L 
Sbjct: 548  QFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDFDVMALELDDPAAYKILC 607

Query: 604  KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE-YF 660
             ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG    
Sbjct: 608  DANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRAAV 667

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
            +Y     +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR+ 
Sbjct: 668  DYFHNDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHREL 727

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK ++ + F+AA 
Sbjct: 728  FEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHPTEFLAAT 787

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPI----IESDGKHKKIRYGLG 836
            +S  MDDT+K++I  +DA +  G+ +LPP++N S Y F P+     E     + +RYGLG
Sbjct: 788  MSSDMDDTDKVQIFCRDA-QDNGVEVLPPDVNFSGYRFEPVKDKYTEKGKPPRTMRYGLG 846

Query: 837  AIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            A+KGTG+  +E I+  RK G  F NLFDF +R+ K+ +NRR I +LI +GAFD     R 
Sbjct: 847  AVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVGKQAVNRRTIEALIKAGAFDTIEPNRA 906

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
             ++AS+  A++ AE+  +  NQ SLF +D  + +   L   KV  W   ++L EEK  LG
Sbjct: 907  AMLASVPTAMEAAEQAARSANQASLFGDDSGDVVAGEL--AKVAPWDLHKKLTEEKSALG 964

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDN 1014
            +  S H+F  +  E+R+ +P+ L+ ++P      + G++  +++  T RGK++  V+DD 
Sbjct: 965  YYYSGHLFDAWRDEVRRIVPMQLARVEPQRDLQWMCGVLASVRVMMTRRGKMVFAVLDDG 1024

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            +  VE+ + N+LYEK++N L+E++L+I  GKV  D +   +RI AE+++D+ +AR    K
Sbjct: 1025 TAQVEISVFNELYEKHRNRLREDQLVIAQGKVSNDDYSGGMRIVAEQLYDLQLAREARAK 1084

Query: 1075 KFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
               V  N + + + L+++L  F+   +NG+P V
Sbjct: 1085 SLRVKLNGSADAARLRQMLNPFRAEPENGIPGV 1117


>gi|319763344|ref|YP_004127281.1| DNA polymerase III subunit alpha [Alicycliphilus denitrificans BC]
 gi|317117905|gb|ADV00394.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans BC]
          Length = 1182

 Score = 1164 bits (3011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1098 (51%), Positives = 755/1098 (68%), Gaps = 36/1098 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++ ++AAA D QPALA+TDL+NLFG +KFYK    KG+KPI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G +V +  +     PSR++LLV+N  GYL L ELL++A+  N+         +WL +  
Sbjct: 62   VGAEVCLEGDA-GAPPSRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPLCTWDWLAE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI L+GA  G +G A+  G +D A   A R + IFP  FYIEIQR  + +    + 
Sbjct: 119  LNEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAGRADDEAHVT 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ + LP+VATHP+QF     + AHE R CIAEGEIL+N +R+++FT+EQ FK+ 
Sbjct: 179  TAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANQRRVRRFTREQYFKSG 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSAI NT+EIAKRCNL L  GKP+LP FPTP  + I ++    S  GLK+
Sbjct: 239  AEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAIEEYFRVASYDGLKE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RLL+L+ D    + ++LRY++RL+FE+ TI+KM F GYFLIV DFIQWAKNN  PVGPGR
Sbjct: 299  RLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQWAKNNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVK++Y
Sbjct: 359  GSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQANRDRVIDYVKEKY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GKDAVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD ISKL+P KPG+  TL+        
Sbjct: 419  GKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQTYTLAYPPEPKKE 478

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP L ER++ EE+VR +IE+A+Q+EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 479  GDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGGVLIAPGKLTDFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI+  +    NF+   +
Sbjct: 539  LYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRARHKGQENFAFENV 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI  F
Sbjct: 599  PLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 659  VNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR  F+ GA + G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  PEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA+K  G++  PP+IN   Y F P+ +     K 
Sbjct: 779  HYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYRFEPVTD-----KV 833

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEAIV  R+           G F +LFDF  R+D+  IN+R + +
Sbjct: 834  IRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSRINKRTVEA 893

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD  +  R  LVASID A   A       NQ  LF    +D   +  +  + V+
Sbjct: 894  LIKAGAFDALHLNRAALVASIDRAFDFANAQLANANQGGLFDMMGDDAIGSSTQEPDLVE 953

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITEL 996
               W  K+ L++EK  +GF LS H+F   + E+R+F+   ++EL  +    V +GI+ + 
Sbjct: 954  ATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRFVRTPMAELADSRETQVLAGIVGDC 1013

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++ T  RGK+ +  +DD S  +E   +  +   +   LK++EL++VSG++  D F   +R
Sbjct: 1014 RVITGQRGKLALFKLDDKSGVIEASADEGVIAASAGALKDDELVVVSGRLQFDHFSGGLR 1073

Query: 1057 INAEKIFDINVARILYGK 1074
            +  ++++D+  AR  +G+
Sbjct: 1074 VKVQQVWDLAGARARFGR 1091


>gi|330825578|ref|YP_004388881.1| DNA polymerase III subunit alpha [Alicycliphilus denitrificans K601]
 gi|329310950|gb|AEB85365.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans K601]
          Length = 1182

 Score = 1164 bits (3011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1098 (51%), Positives = 755/1098 (68%), Gaps = 36/1098 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++ ++AAA D QPALA+TDL+NLFG +KFYK    KG+KPI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G +V +  +     PSR++LLV+N  GYL L ELL++A+  N+         +WL +  
Sbjct: 62   VGAEVCLEGDA-GAPPSRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPLCTWDWLAE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI L+GA  G +G A+  G +D A   A R + IFP  FYIEIQR  + +    + 
Sbjct: 119  LNEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAGRADDEAHVT 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ + LP+VATHP+QF     + AHE R CIAEGEIL+N +R+++FT+EQ FK+ 
Sbjct: 179  TAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANPRRVRRFTREQYFKSG 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSAI NT+EIAKRCNL L  GKP+LP FPTP  + I ++    S  GLK+
Sbjct: 239  AEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAIEEYFRVASYDGLKE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RLL+L+ D    + ++LRY++RL+FE+ TI+KM F GYFLIV DFIQWAKNN  PVGPGR
Sbjct: 299  RLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQWAKNNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVK++Y
Sbjct: 359  GSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQANRDRVIDYVKEKY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GKDAVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD ISKL+P KPG+  TL+        
Sbjct: 419  GKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQTYTLAYPPEPKKE 478

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP L ER++ EE+VR +IE+A+Q+EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 479  GDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGGVLIAPGKLTDFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI+  +    NF+   +
Sbjct: 539  LYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRARHKGQENFAFENV 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI  F
Sbjct: 599  PLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 659  VNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR  F+ GA + G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  PEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA+K  G++  PP+IN   Y F P+ +     K 
Sbjct: 779  HYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYRFEPVTD-----KV 833

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEAIV  R+           G F +LFDF  R+D+  IN+R + +
Sbjct: 834  IRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSRINKRTVEA 893

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD  +  R  LVASID A   A       NQ  LF    +D   +  +  + V+
Sbjct: 894  LIKAGAFDALHLNRAALVASIDRAFDFANAQLANANQGGLFDMMGDDAIGSSTQEPDLVE 953

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITEL 996
               W  K+ L++EK  +GF LS H+F   + E+R+F+   ++EL  +    V +GI+ + 
Sbjct: 954  ATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRFVRTPMAELADSRETQVLAGIVGDC 1013

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++ T  RGK+ +  +DD S  +E   +  +   +   LK++EL++VSG++  D F   +R
Sbjct: 1014 RVITGQRGKLALFKLDDKSGVIEASADEGVIAASAGALKDDELVVVSGRLQFDHFSGGLR 1073

Query: 1057 INAEKIFDINVARILYGK 1074
            +  ++++D+  AR  +G+
Sbjct: 1074 VKVQQVWDLAGARARFGR 1091


>gi|452124361|ref|ZP_21936945.1| DNA polymerase III subunit alpha [Bordetella holmesii F627]
 gi|452127758|ref|ZP_21940338.1| DNA polymerase III subunit alpha [Bordetella holmesii H558]
 gi|451923591|gb|EMD73732.1| DNA polymerase III subunit alpha [Bordetella holmesii F627]
 gi|451926627|gb|EMD76760.1| DNA polymerase III subunit alpha [Bordetella holmesii H558]
          Length = 1163

 Score = 1163 bits (3009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/1154 (48%), Positives = 791/1154 (68%), Gaps = 23/1154 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSE+S++DG++RI+D+I+  A   QPA+A+TDLSN+FG+IKFYK+A   GIK
Sbjct: 9    PPFVHLRVHSEFSVVDGIVRISDLIKRVARMGQPAVALTDLSNIFGLIKFYKNARGAGIK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVW++N+ +  KP R LLLV+N+ GYL LCELLS++++ N   GRAE+R EWL+ 
Sbjct: 69   PIAGCDVWLSNDEDRDKPFRALLLVRNHQGYLNLCELLSQSFLLNQYKGRAELRREWLQG 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q+GLI LSG   GDIG A+  G    A   AR+W ++FP  FYIE+QR         
Sbjct: 129  ---QEGLIVLSGGRAGDIGHALDAGNTVAALALARQWGEMFPGAFYIELQRAGMDGDEAY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             Q  + +A+   LP+VATHP+QFL + EF AHE R CIAEGEIL++ +R+K+FT +Q  +
Sbjct: 186  TQAAMRLAAEAGLPVVATHPVQFLDREEFQAHEARVCIAEGEILADPRRVKRFTPQQYLQ 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM   F D+PSA+ NTIEIAKRCNL L  GKP+LP FPTP+ + ++D+L+  S+ GL
Sbjct: 246  SSQEMQARFADVPSALANTIEIAKRCNLSLVLGKPRLPIFPTPEGVTLDDYLVQLSEEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ +      ++  Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGP
Sbjct: 306  EKRLAFLFPEQAERDRQRDTYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI+YVK 
Sbjct: 366  GRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIEYVKT 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG+ AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    +L   +K+E
Sbjct: 426  KYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPADPWSLERTLKDE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGI 541
            P   ER + EEEVR L++LA+ +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     
Sbjct: 486  PAFKERYEQEEEVRALVDLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSA 545

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +
Sbjct: 546  VSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNADKRDFDIMALALDDPAAYKV 605

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE- 658
            L  ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG  
Sbjct: 606  LCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRA 665

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P  +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR
Sbjct: 666  AVDYFHPDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHR 725

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + FQ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK ++ + F+A
Sbjct: 726  ELFQQGAQEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPAEFLA 785

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH----KKIRYG 834
            A LS  MDDT+K++I  +DA +  G+ +LPP++N S Y F P+ +    H    + +RYG
Sbjct: 786  ATLSSDMDDTDKVQIFCRDA-QDNGVEVLPPDVNASGYRFAPVEDEHTAHGRPPRTMRYG 844

Query: 835  LGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KGTG+  +E I+  R+  G F NLFDF +R+ K  +NRR I +LI +GAFD     
Sbjct: 845  LGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAVNRRTIEALIRAGAFDTIESN 904

Query: 894  RYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
            R  ++AS+  A++ AE+  + +NQ SLF +D  + +   L   KV  W+    L EEK  
Sbjct: 905  RAAMLASVGTAMEAAEQAARSVNQASLFGDDSGDVVAGEL--AKVAPWNLHTRLTEEKAA 962

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVID 1012
            LG+  S H+F  +  E+R+ +P+ L+ ++P      + G++  +++  T RGK++  V+D
Sbjct: 963  LGYYFSGHLFDAWRDEVRRIVPMPLARIEPQRDLQWMCGVLAGVRVMMTRRGKMVFAVLD 1022

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  VE+ + N+L+EK++N LKE++LLIV GKV  D +   +RI AE +FD+ +AR   
Sbjct: 1023 DGTAQVEISVFNELFEKHRNRLKEDQLLIVQGKVSNDEYSGGMRIVAENLFDLQLAREAR 1082

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKC--KNGLPFVLYYCINKSIKY--EMKFPLNYKVQP 1128
             +   +  N   + + L+++L  F+   +NG+P V    I +   +   ++    ++V+ 
Sbjct: 1083 ARALRITLNGQADAARLRQLLNPFRAEPENGIPGVPVDVIYRKDNFLCTVRLGQEWRVRM 1142

Query: 1129 IDDLKLALINLGLY 1142
             D L   L NL L+
Sbjct: 1143 ADTL---LENLALW 1153


>gi|33596339|ref|NP_883982.1| DNA polymerase III subunit alpha [Bordetella parapertussis 12822]
 gi|33602375|ref|NP_889935.1| DNA polymerase III subunit alpha [Bordetella bronchiseptica RB50]
 gi|410420968|ref|YP_006901417.1| DNA polymerase III subunit alpha [Bordetella bronchiseptica MO149]
 gi|410472404|ref|YP_006895685.1| DNA polymerase III subunit alpha [Bordetella parapertussis Bpp5]
 gi|412338526|ref|YP_006967281.1| DNA polymerase III subunit alpha [Bordetella bronchiseptica 253]
 gi|427815463|ref|ZP_18982527.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica 1289]
 gi|427826082|ref|ZP_18993144.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica Bbr77]
 gi|33566108|emb|CAE37008.1| DNA polymerase III alpha subunit [Bordetella parapertussis]
 gi|33576814|emb|CAE33893.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica RB50]
 gi|408442514|emb|CCJ49058.1| DNA polymerase III alpha subunit [Bordetella parapertussis Bpp5]
 gi|408448263|emb|CCJ59944.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica MO149]
 gi|408768360|emb|CCJ53122.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica 253]
 gi|410566463|emb|CCN24024.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica 1289]
 gi|410591347|emb|CCN06445.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica Bbr77]
          Length = 1163

 Score = 1162 bits (3007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1107 (49%), Positives = 775/1107 (70%), Gaps = 16/1107 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSE+S+ DG++RI+D+I+  A   QPA+A+TDLSN+FG+IKFYK A   G+K
Sbjct: 9    PPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYKGARGAGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+ G DVW+TN+ + +KP RLLLLV+N+ GYL LCELL+++++EN   GRAE+R EWL+ 
Sbjct: 69   PVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCELLTRSFLENQYKGRAEVRREWLQG 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q+GLI LSGA  GD+G A++ G    A + AR+W ++FP ++YIE+QR         
Sbjct: 129  ---QEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPGSYYIELQRAGFDGDETY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             Q  + +A+   LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R++++T++Q   
Sbjct: 186  TQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEILANPRRVRRYTQDQYLL 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM + F D+PSA+ NT+EIA+RCNL L  GKP+LP FPTP  + ++D+L+  S+ GL
Sbjct: 246  SSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTPDGVTLDDYLVQLSEEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ D      ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGP
Sbjct: 306  EKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK 
Sbjct: 366  GRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKM 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG++AVSQI TFGT+ AK  +RD GRVLD+ Y FCD++SKLIPF P    TL   +K+E
Sbjct: 426  KYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDALSKLIPFNPADPWTLERTLKDE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGI 541
            P   +R + EEEVR L++LA+ +EG+ R++GMHAGGVLIAP KL +FCPLY Q G     
Sbjct: 486  PAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLIAPGKLTDFCPLYCQPGQENSA 545

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DKDD+E  GL+KFDFLGL  L+ILD  + F+++ N    +F +  L L+D+  Y +
Sbjct: 546  VSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFNADKRDFDVMALSLDDQAAYKV 605

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE- 658
            L  ANT AVFQLES+GMK +LK+ +P  FE+IIA+++LYRPGP++  ++ +F  RKHG  
Sbjct: 606  LCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRA 665

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P  +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR
Sbjct: 666  AVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHR 725

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK ++ + F+A
Sbjct: 726  ELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPTEFLA 785

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYG 834
            A LS  MDDT+K++I V+DA +  G+ +LPP++N S Y F P+ +   +  K    +RYG
Sbjct: 786  ATLSSDMDDTDKVQIFVRDA-QDNGVEVLPPDVNASGYRFEPVADKHTEQGKPPRTMRYG 844

Query: 835  LGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KGTG+  +E I+  R+ G  F NLFDF +R+ K  +NRR I +LI +GAFD     
Sbjct: 845  LGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPN 904

Query: 894  RYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
            R  ++AS+  A++ AE+  +  NQ SLF +D  + +   L   KV  W+    L EEK  
Sbjct: 905  RAAMLASVGTAMEAAEQAARSANQSSLFGDDSGDVVAGEL--TKVAPWNLHTTLTEEKTA 962

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVID 1012
            LG+  S H+F  +  E+R+ +P+ L+ L+P      + G++  ++   T RGK++  V+D
Sbjct: 963  LGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLD 1022

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +E+ + N+LYEK++  L+E++LL+V GKV  D +   +RI AE+++D+ +AR   
Sbjct: 1023 DGTAQIEISVFNELYEKHRGRLREDQLLVVQGKVSNDEYSGGMRIVAEQLYDLQLAREAR 1082

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCK 1099
             K   +  N   + + L+++L  F+ +
Sbjct: 1083 AKSLRIRLNGQADAARLRQLLNPFRAE 1109


>gi|427817018|ref|ZP_18984081.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica D445]
 gi|410568018|emb|CCN16038.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica D445]
          Length = 1163

 Score = 1162 bits (3006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1107 (49%), Positives = 775/1107 (70%), Gaps = 16/1107 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSE+S+ DG++RI+D+I+  A   QPA+A+TDLSN+FG+IKFYK A   G+K
Sbjct: 9    PPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYKGARGAGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+ G DVW+TN+ + +KP RLLLLV+N+ GYL LCELL+++++EN   GRAE+R EWL  
Sbjct: 69   PVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCELLTRSFLENQYKGRAEVRREWLHG 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q+GLI LSGA  GD+G A++ G    A + AR+W ++FP ++YIE+QR         
Sbjct: 129  ---QEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPGSYYIELQRAGFDGDETY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             Q  + +A+   LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R++++T++Q   
Sbjct: 186  TQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEILANPRRVRRYTQDQYLL 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM + F D+PSA+ NT+EIA+RCNL L  GKP+LP FPTP  + ++D+L+  S+ GL
Sbjct: 246  SSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTPDGVTLDDYLVQLSEEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ D +    ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGP
Sbjct: 306  EKRLQFLFPDEDERNAKRDQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK 
Sbjct: 366  GRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKM 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG++AVSQI TFGT+ AK  +RD GRVLD+ Y FCD++SKLIPF P    TL   +K+E
Sbjct: 426  KYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDALSKLIPFNPADPWTLERTLKDE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGI 541
            P   +R + EEEVR L++LA+ +EG+ R++GMHAGGVLIAP KL +FCPLY Q G     
Sbjct: 486  PAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLIAPGKLTDFCPLYCQPGQENSA 545

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DKDD+E  GL+KFDFLGL  L+ILD  + F+++ N    +F +  L L+D+  Y +
Sbjct: 546  VSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFNADKRDFDVMALSLDDQAAYKV 605

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE- 658
            L  ANT AVFQLES+GMK +LK+ +P  FE+IIA+++LYRPGP++  ++ +F  RKHG  
Sbjct: 606  LCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRA 665

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P  +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR
Sbjct: 666  AVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHR 725

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK ++ + F+A
Sbjct: 726  ELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPTEFLA 785

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYG 834
            A LS  MDDT+K++I V+DA +  G+ +LPP++N S Y F P+ +   +  K    +RYG
Sbjct: 786  ATLSSDMDDTDKVQIFVRDA-QDNGVEVLPPDVNASGYRFEPVADKHTEQGKPPRTMRYG 844

Query: 835  LGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KGTG+  +E I+  R+ G  F NLFDF +R+ K  +NRR I +LI +GAFD     
Sbjct: 845  LGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPN 904

Query: 894  RYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
            R  ++AS+  A++ AE+  +  NQ SLF +D  + +   L   KV  W+    L EEK  
Sbjct: 905  RAAMLASVGTAMEAAEQAARSANQSSLFGDDSGDVVAGEL--TKVAPWNLHTTLTEEKTA 962

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVID 1012
            LG+  S H+F  +  E+R+ +P+ L+ L+P      + G++  ++   T RGK++  V+D
Sbjct: 963  LGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLD 1022

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +E+ + N+LYEK++  L+E++LL+V GKV  D +   +RI AE+++D+ +AR   
Sbjct: 1023 DGTAQIEISVFNELYEKHRGRLREDQLLVVQGKVSNDEYSGGMRIVAEQLYDLQLAREAR 1082

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCK 1099
             K   +  N   + + L+++L  F+ +
Sbjct: 1083 AKSLRIRLNGQADAARLRQLLNPFRAE 1109


>gi|33593326|ref|NP_880970.1| DNA polymerase III subunit alpha [Bordetella pertussis Tohama I]
 gi|384204621|ref|YP_005590360.1| DNA polymerase III subunit alpha [Bordetella pertussis CS]
 gi|408416111|ref|YP_006626818.1| DNA polymerase III subunit alpha [Bordetella pertussis 18323]
 gi|33572682|emb|CAE42605.1| DNA polymerase III alpha subunit [Bordetella pertussis Tohama I]
 gi|332382735|gb|AEE67582.1| DNA polymerase III subunit alpha [Bordetella pertussis CS]
 gi|401778281|emb|CCJ63682.1| DNA polymerase III alpha subunit [Bordetella pertussis 18323]
          Length = 1163

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1107 (49%), Positives = 774/1107 (69%), Gaps = 16/1107 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSE+S+ DG++RI+D+I+  A   QPA+A+TDLSN+FG+IKFYK A   G+K
Sbjct: 9    PPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYKGARGAGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+ G DVW+TN+ + +KP RLLLLV+N+ GYL LCELL+++++EN   GRAE+R EWL+ 
Sbjct: 69   PVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCELLTRSFLENQYKGRAEVRREWLQG 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q+GLI LSGA  GD+G A++ G    A + AR+W ++FP ++YIE+QR         
Sbjct: 129  ---QEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPGSYYIELQRAGFDGDETY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             Q  + +A+   LP+VATHP+QFL + EF AHE R CIAEGEIL+N +R++++T++Q   
Sbjct: 186  TQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEILANPRRVRRYTQDQYLL 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM + F D+PSA+ NT+EIA+RCNL L  GKP+LP FPTP  + ++D+L+  S+ GL
Sbjct: 246  SSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTPDGVTLDDYLVQLSEEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ D      ++ +Y +RL++E +TII+M F GYFLIV DFI W KNN +PVGP
Sbjct: 306  EKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK 
Sbjct: 366  GRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKM 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG++AVSQI TFGT+ AK  +RD GRVLD+ Y FCD++SKLIPF P    TL   +K+E
Sbjct: 426  KYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDALSKLIPFNPADPWTLERTLKDE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGI 541
            P   +R + EEEVR L++LA+ +EG+ R++GMHAGGVLIAP KL +FCPLY Q G     
Sbjct: 486  PAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLIAPGKLTDFCPLYCQPGQENSA 545

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DKDD+E  GL+KFDFLGL  L+ILD  + F+++ N    +F +  L L+D+  Y +
Sbjct: 546  VSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFNADKRDFDVMALSLDDQAAYKV 605

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE- 658
            L  ANT AVFQLES+GMK +LK+ +P  FE+IIA+++LYRPGP++  ++ +F  RKHG  
Sbjct: 606  LCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRA 665

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P  +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR
Sbjct: 666  AVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHR 725

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + F+ GA + G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK ++ + F+A
Sbjct: 726  ELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPTEFLA 785

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYG 834
            A LS  MDDT+K++I V+DA +  G+ +LPP++N S Y F P+ +   +  K    +RYG
Sbjct: 786  ATLSSDMDDTDKVQIFVRDA-QDNGVEVLPPDVNASGYRFEPVADKHTEQGKPPRTMRYG 844

Query: 835  LGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KGTG+  +E I+  R+ G  F NLFDF +R+ K  +NRR I +LI +GAFD     
Sbjct: 845  LGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPN 904

Query: 894  RYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
            R  ++ S+  A++ AE+  +  NQ SLF +D  + +   L   KV  W+    L EEK  
Sbjct: 905  RAAMLVSVGTAMEAAEQAARSANQSSLFGDDSGDVVAGEL--TKVAPWNLHTTLTEEKTA 962

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVID 1012
            LG+  S H+F  +  E+R+ +P+ L+ L+P      + G++  ++   T RGK++  V+D
Sbjct: 963  LGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLD 1022

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +E+ + N+LYEK++  L+E++LL+V GKV  D +   +RI AE+++D+ +AR   
Sbjct: 1023 DGTAQIEISVFNELYEKHRGRLREDQLLVVQGKVSNDEYSGGMRIVAEQLYDLQLAREAR 1082

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCK 1099
             K   +  N   + + L+++L  F+ +
Sbjct: 1083 AKSLRIRLNGQADAARLRQLLNPFRAE 1109


>gi|332283756|ref|YP_004415667.1| DNA polymerase III subunit alpha [Pusillimonas sp. T7-7]
 gi|330427709|gb|AEC19043.1| DNA polymerase III subunit alpha [Pusillimonas sp. T7-7]
          Length = 1163

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1116 (49%), Positives = 781/1116 (69%), Gaps = 20/1116 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSE+S++DG+ RI D+++ AA   QPA+A+TDLSNLFG IKFYK+A   G+K
Sbjct: 8    PSFVHLRVHSEFSVVDGIARIPDLVKKAAEYGQPAMALTDLSNLFGFIKFYKAARKAGVK 67

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI G DVW+ NE +  KP RLLLL  +  GYL LCELLS+A+++N   GRAEIR EWL+ 
Sbjct: 68   PIAGSDVWLQNEQDRDKPYRLLLLASDQQGYLALCELLSRAWLDNQYRGRAEIRREWLQG 127

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               + GLI LSG   GDIG  ++ G  + A   A  W++ FPD+++IE+QR         
Sbjct: 128  ---KTGLIILSGGRAGDIGQLLEAGNVEEAAVVAASWARAFPDSYFIELQRSGHEGDETY 184

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q  + +A  + LP+VATHP+QFL   +F AHE R CIA+GE L N KR++K+T EQ   
Sbjct: 185  VQAAMRLAGRVGLPVVATHPVQFLHADDFRAHEARVCIADGEQLGNAKRVRKYTTEQYLL 244

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
              ++M   F D+PSA+ NT+EIAKRCNL L   KP+LP FPTP+ + ++D+L+  ++ GL
Sbjct: 245  DSADMELRFADVPSALANTLEIAKRCNLTLVLDKPRLPNFPTPQGVTLDDYLVQLAEEGL 304

Query: 303  KKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
              R+  L+ + E  + EK  +Y +RLQ+E +TII M F GYFLIV+DFI W K+N +PVG
Sbjct: 305  AVRMAQLFPE-EAERQEKYPQYLERLQWECKTIIGMGFPGYFLIVADFINWGKSNGVPVG 363

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAYSL ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI YVK
Sbjct: 364  PGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVK 423

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
             +YGK+AVSQI TFGT+ AK  +RDVGRVL++ Y  CD +SKLIPF P    TL  A++E
Sbjct: 424  QKYGKEAVSQIATFGTLGAKAVVRDVGRVLEMPYMLCDGLSKLIPFSPADPWTLKRALEE 483

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TG 540
            EP   ER   +EEVR LI+LA+ +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G+ T 
Sbjct: 484  EPAFKERYDQDEEVRALIDLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGVDTS 543

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +SQ+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  LPL+D   Y 
Sbjct: 544  AVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDFDIMALPLDDAQAYK 603

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL   NT AVFQLES+GMK +LK  +P+ FE++IA+++LYRPGP++  ++ +F  RKHG 
Sbjct: 604  LLSDGNTTAVFQLESRGMKELLKNLRPNTFEDVIAMLALYRPGPLESGMVVDFVNRKHGR 663

Query: 659  Y-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
               +Y  P  + VL  TYG++VYQEQVM I+QI+GGY+LG ADLLRRA+GKKK  EM +H
Sbjct: 664  AEVDYFHPDLEPVLQSTYGVIVYQEQVMLISQIIGGYTLGGADLLRRAMGKKKAEEMAKH 723

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            R  F+ GA++ G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK ++ + F+
Sbjct: 724  RAIFEKGAVEKGYDADLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKYYHPAEFL 783

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE---SDGK-HKKIRY 833
            AA LS  MDDT+K++I  KD +    +++LPP++N S Y F P+ +   + G+  + IRY
Sbjct: 784  AATLSSDMDDTDKVQIFWKDCLANS-VTVLPPDVNASAYRFEPVADEFMAKGQPPRTIRY 842

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGA+KGTG++ IE I+  R + G + +LFDF +R+D+  +NRR I +LI +GAFD   E
Sbjct: 843  GLGAVKGTGQAAIEEIIRARTEGGPYASLFDFCRRVDRHTVNRRSIEALIRAGAFDAIAE 902

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             R  L+A++  A++ AE+ ++  NQ+SLF ++ N+ +++ +   KVP+W  +  L +EK 
Sbjct: 903  NRAALLATVANAIEAAEQAERSANQVSLFADNANDIVEDEV--AKVPAWDLQTRLRQEKA 960

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVI 1011
             LGF  S H+F  +  E+R+F P  L+ L+ + S    +G+++ L+ K T RGK+L  ++
Sbjct: 961  ALGFYFSGHLFDAWRDEVRRFAPRPLARLEASRSLQWFAGVLSSLRPKMTRRGKMLYALL 1020

Query: 1012 DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARIL 1071
            DD S  VEV I N+LYE+++N LKE++L+I+ GKV  D +   +R++A++IFD+ +AR  
Sbjct: 1021 DDGSAQVEVAIFNELYEQHRNRLKEDQLVIIHGKVSNDDYSGGLRVSADEIFDLQLAREA 1080

Query: 1072 YGKKFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
              +   +  N   N   L+++L  F+   +NG+P V
Sbjct: 1081 RARSLRITLNGNANAQQLRQLLNPFRAEPENGVPGV 1116


>gi|339482342|ref|YP_004694128.1| DNA polymerase III subunit alpha [Nitrosomonas sp. Is79A3]
 gi|338804487|gb|AEJ00729.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. Is79A3]
          Length = 1173

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/1122 (52%), Positives = 783/1122 (69%), Gaps = 31/1122 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLRLHSEYSI+D  +RI +V+  A  D  PALA+TDLSNLFG++KFY++AY  GIK
Sbjct: 5    PAFIHLRLHSEYSILDSTVRIPEVVAKAVADQMPALALTDLSNLFGLVKFYQTAYKNGIK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCDVWITNE +  KP RLLLL +++ GYL L  LLS+AY EN ++GRAEI+  WL  
Sbjct: 65   PILGCDVWITNESDRNKPIRLLLLCQSHAGYLLLSRLLSRAYRENQHHGRAEIKESWLHS 124

Query: 123  NKY-QDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            N+    GLIALSGA  GDIG+++       AE   ++W+ +FPD FYIEIQR    N   
Sbjct: 125  NESGTRGLIALSGARFGDIGLSILQNNLQQAEIQTQKWADLFPDRFYIEIQRDGHANEAM 184

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +QQ + +A   NLP+VAT  +QFL   ++ AHE R CIAEG  L + +R + FT++Q F
Sbjct: 185  LVQQSLVLAKKFNLPVVATQAVQFLNPEDYRAHEARVCIAEGHTLDDKRRPRYFTEQQYF 244

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            KTQ+E+ +LF DIPSA+ NTIEIAKRCNL LE G  +LP FPTP N ++  +L  ++  G
Sbjct: 245  KTQAEITQLFADIPSALANTIEIAKRCNLVLELGINRLPLFPTPNNESLEQYLRDQAAAG 304

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L +R+ +L+ D  ++  +  +Y+ RL+FE+ TII+M F+GYFLIV+DFI WAK+N +PVG
Sbjct: 305  LIQRMASLFPDEAVHNGKMSKYQSRLEFEVNTIIQMGFAGYFLIVADFINWAKHNDVPVG 364

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + R+ VI+YVK
Sbjct: 365  PGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSMPDFDIDFCQDRRELVIEYVK 424

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
             RYG + VSQIVTFGTMAAK  IRD+GRVLDL Y+F D ++KLIPF+ G  +TL  A + 
Sbjct: 425  QRYGTEKVSQIVTFGTMAAKAVIRDIGRVLDLPYNFVDQLAKLIPFEIG--MTLKKARQL 482

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EPQL +R   EE+VR L+ELA+ +EGI RNVGMHAGGVLIA  ++ +FCP+Y  E    +
Sbjct: 483  EPQLNQRAAEEEDVRNLLELAESLEGITRNVGMHAGGVLIASGEITDFCPIYCTESGDSV 542

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKK----------INTKTTNFSLNKL 591
            +SQ DKDD+E++GL+KFDFLGL TL+ LD+ + +I++          I++    FSL  L
Sbjct: 543  VSQLDKDDVEKVGLVKFDFLGLRTLTTLDRAVGYIRQSRKKGEPSIAIDSTARPFSLETL 602

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL D+ TY L++K N V +FQ ES+GM ++L++AKPD FE+IIAL++LYRPGPMDLI  F
Sbjct: 603  PLEDERTYALMRKGNAVGIFQFESRGMIDLLQKAKPDCFEDIIALVALYRPGPMDLIPEF 662

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG +   Y DPR + +L  TYGIM+YQEQVMQIAQ++GGYSLG ADLLRRA+GKKK
Sbjct: 663  IDRKHGKKTIEYLDPRLEPILGPTYGIMIYQEQVMQIAQVIGGYSLGSADLLRRAMGKKK 722

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R  F NGA+  GLSK KA E+F  +EKFAGYGFNKSHA AYAL+++ TAYLK 
Sbjct: 723  VEEMAQQRDIFVNGAVNNGLSKDKATELFGLMEKFAGYGFNKSHAAAYALIAFQTAYLKA 782

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA LS  MDDT+K+ I V+D I   GL+ILPP+IN S Y F P  E     K 
Sbjct: 783  HYPAEFMAACLSADMDDTDKVHIFVEDTIAN-GLTILPPDINRSGYRFIPADE-----KT 836

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            IR+GLGA+KGTG+S I +IV  R + G FT+LFDF  R+D++  NRR++ SLI  GAFD 
Sbjct: 837  IRFGLGAVKGTGESAISSIVAVREQTGPFTDLFDFCSRVDRRIANRRVMESLIRVGAFDV 896

Query: 890  FNEKRYMLVASIDVALKNAEKTKKFINQLSLFKND-DNNNLKEYLNYVKVPSWSKKQELI 948
             N  R  L+AS+ +A+++AE+  +  +Q +LF  + D + ++  L  +   SWS +++L 
Sbjct: 897  INPNRASLLASVGLAIESAEQMSRSSSQANLFGGEGDQSPMQPQL--IHAESWSDREKLR 954

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKIL 1007
             EK  LG+  S H F  Y  E+++FI   L  L P+     ++GII  ++++ T RG++ 
Sbjct: 955  HEKIGLGYYFSGHPFDTYAAELKRFIRTRLDRLNPSREPQLLAGIIHSIRVQMTRRGRMG 1014

Query: 1008 IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF----LKNIRINAEKIF 1063
            +I +DD    VE++I ++L++ N+  LKE++LLI   KV    +     + +RI AE+++
Sbjct: 1015 VINLDDGKARVELVIFSELFDANRAWLKEDQLLIAEAKVSNRGYNGEEGEELRITAEQLY 1074

Query: 1064 DINVARILYGKKFSVMFNRTF--NISILKKILLRFKCKNGLP 1103
            D    R  + K+  +  + T    +S LK +L  F  +   P
Sbjct: 1075 DFAGIRSRFAKQIRIHCDPTTLSQVSSLKTLLAPFSNQTQKP 1116


>gi|394987752|ref|ZP_10380591.1| hypothetical protein SCD_00152 [Sulfuricella denitrificans skB26]
 gi|393792971|dbj|GAB70230.1| hypothetical protein SCD_00152 [Sulfuricella denitrificans skB26]
          Length = 1147

 Score = 1158 bits (2995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/1156 (49%), Positives = 795/1156 (68%), Gaps = 18/1156 (1%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            + P FIHLRLHSEYSI+DG++RIND +  A  D  PALA+TDLSNLFG++KFY++A  KG
Sbjct: 2    LAPSFIHLRLHSEYSIVDGIVRINDAVGFAVADRMPALALTDLSNLFGMVKFYQAARGKG 61

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI+GCDVWI+NE    +P RLLLL +N  GYL+LC+LL++AY  N + GRAE+R EW 
Sbjct: 62   IKPIVGCDVWISNEANRDQPHRLLLLCRNRQGYLRLCDLLTRAYRSNQHRGRAEVRREWF 121

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E     DGLIALSGAH GD+G A+       A+  A  W  +FP  FY+E+QR   P  +
Sbjct: 122  EGGG-SDGLIALSGAHFGDVGQALLQDNRTQAQELAAEWQHLFPGAFYLELQRTGLPQAD 180

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              ++  + +AS ++LP+VATHPI+FL   ++ AHE R CI+EG +L++ +R + FT++Q 
Sbjct: 181  VHVRLALRLASELHLPVVATHPIEFLASDDYKAHEARVCISEGYMLADKRRPRVFTEQQY 240

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FKTQ+EM +LF DIP A+ N++EIAKRCNL +E G  KLP FP P+ + ++D+L  +++ 
Sbjct: 241  FKTQAEMAELFADIPEALTNSVEIAKRCNLSVELGNSKLPLFPVPEGMTLDDYLCQRAEE 300

Query: 301  GLKKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL +R+  LY D E  + E+   Y  RL+ E+ TII+M F GYFLIV+DFI W K+N +P
Sbjct: 301  GLAERMKELYPD-EAKRAEQYPVYTDRLKIELGTIIQMGFPGYFLIVADFITWGKHNGVP 359

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC E R +VI+Y
Sbjct: 360  VGPGRGSGAGSLVAYSLGITDLDPLRYALLFERFLNPERVSMPDFDIDFCQETRYKVIEY 419

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG DAVSQI TFGTMAAK  +RDVGRVLDL Y+FCD +SKLIP  PGK  +L  A+
Sbjct: 420  VREKYGADAVSQIATFGTMAAKAVVRDVGRVLDLPYNFCDQLSKLIPAAPGKQYSLDEAL 479

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EPQL ER  NEEEVR+L  LA+++EG+ RNVGMHAGGVLIAP KL +FCPLY+     
Sbjct: 480  TMEPQLKERYDNEEEVRELFILARKLEGLTRNVGMHAGGVLIAPGKLTDFCPLYQPPNAD 539

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
             ++SQ+DKDD+E  GL+KFDFLGL  L+I++  + +IKK++  + +  L+    +D   Y
Sbjct: 540  NVVSQFDKDDVEAAGLVKFDFLGLRNLTIIELALKYIKKLDP-SFDQPLDTQHFDDPAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHG 657
             +L+KANT AVFQLES+GMK +L + +PD FE+IIA+++LYRPGP+   ++ +F  RK G
Sbjct: 599  EVLRKANTTAVFQLESEGMKKLLSKLQPDRFEDIIAVLALYRPGPLGSGMVDDFILRKKG 658

Query: 658  -EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIE 716
             +  +Y  P  +  L+ TYG++VYQEQVMQI+QI+GGY+LG ADLLRRA+GKKK  EM +
Sbjct: 659  KQTIDYFHPDLQPCLAPTYGVIVYQEQVMQISQIIGGYTLGGADLLRRAMGKKKQEEMDK 718

Query: 717  HRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFF 776
            HR  F  GA+K    +  AN +F+ + KFA YGFNKSH  AYA++SY TA+LK H++S F
Sbjct: 719  HRSLFVEGALKKDYPEKLANSLFDLMAKFAEYGFNKSHTAAYAVISYQTAWLKAHHTSAF 778

Query: 777  MAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLG 836
            MAA LS  +D+T+++K+  +D +    + +L P++N+S Y F P+        ++RYGLG
Sbjct: 779  MAATLSSELDNTDQLKVFYEDTLAN-KVKVLAPDVNVSGYRFEPV-----SMTEVRYGLG 832

Query: 837  AIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            A+KGTG++ I  IV  R K G FT+LFDF +R+DK+ +NRR+I SL+ +GAFD  NE R 
Sbjct: 833  AVKGTGEAAISVIVVTREKDGPFTSLFDFCRRVDKRTVNRRVIESLVRAGAFDTINENRA 892

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLN-YVKVPSWSKKQELIEEKKVL 954
             L+AS+ VA++ AE+  + I Q SLF   D+   +   +  V    W   ++L  EKK L
Sbjct: 893  SLLASVGVAMEAAEQENRDILQNSLFDAMDDGGAESRPDAMVDAQPWPMIEQLTNEKKAL 952

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKILIIVIDD 1013
            GF  S H +  Y  E+  FI   LS++ P      ++G+I  ++ + T RGK+  I ++D
Sbjct: 953  GFYFSGHPYDAYRAELTGFIKTRLSDIAPQQQPVWLAGVIYAIRTQMTRRGKMAFISLED 1012

Query: 1014 NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYG 1073
              + +EV + ++L++ +K+ILKE++LLIV  K+ +D +    R+ AE + D+  AR  + 
Sbjct: 1013 GISRIEVSVFSELFDAHKDILKEDQLLIVEAKISKDDYSGGFRVIAESLLDLAGARTRFA 1072

Query: 1074 KKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLK 1133
            K   +      N   L++IL  ++ + G    + YC N +   E++   +++V+  D+L 
Sbjct: 1073 KLLRLSCMAPANTDKLREILSGYRDQAGCRVRIGYC-NTTASCELELGEDWRVKLKDNLL 1131

Query: 1134 LALIN-LGLYNAIIEY 1148
             +L + +G  N+ I+Y
Sbjct: 1132 ASLADCIGGENSAIQY 1147


>gi|291615022|ref|YP_003525179.1| DNA polymerase III, subunit alpha [Sideroxydans lithotrophicus ES-1]
 gi|291585134|gb|ADE12792.1| DNA polymerase III, alpha subunit [Sideroxydans lithotrophicus ES-1]
          Length = 1189

 Score = 1157 bits (2993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1158 (48%), Positives = 779/1158 (67%), Gaps = 60/1158 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HLRLHSEYSI DG++RI + + AA  D  PALA+TDLSN+FG++KFYK A   G
Sbjct: 1    MQPSFVHLRLHSEYSIADGIVRIGEAVSAAKADAMPALALTDLSNVFGLVKFYKEARGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI+GCDV+++N+    +P RLLLL +++ GYL+LC LL++AY+EN   GR EIR EWL
Sbjct: 61   IKPIVGCDVYVSNDAVRDQPFRLLLLCQSHAGYLRLCGLLTRAYLENQYRGRPEIRTEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                  DGLIALSGAHLG++G+ + NG    AE  A  ++ +FP  FY+E+QRF      
Sbjct: 121  RDGT--DGLIALSGAHLGEVGMTLLNGNASSAEVVALGYADLFPQRFYLEVQRFGAAREE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              ++  + +AS + LP+VATHP+QFL   +F AHE R CIAEG +L++ +R ++FT +Q 
Sbjct: 179  QHLRDTVKLASKLALPVVATHPVQFLTIDDFKAHEARVCIAEGYVLNDKRRQRQFTAQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FKTQ+EM  LF D+P A+QN++EIAKRCN+ L+ GKP LP FPTP   +++DFL S+S+ 
Sbjct: 239  FKTQAEMAALFADLPEALQNSVEIAKRCNISLKLGKPHLPDFPTPNGESLDDFLRSESQR 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKN----- 355
            GL++R+L LY D  +   +   Y+ RL FE+ TII M F GYFLIV+DFI+WAK+     
Sbjct: 299  GLEQRMLQLYPDETVRAAKMAEYQARLDFEVNTIINMKFPGYFLIVADFIRWAKSFRDAR 358

Query: 356  --NSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGR 413
              N +PVGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC +GR
Sbjct: 359  FPNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYELLFERFLNPERVSMPDFDVDFCQDGR 418

Query: 414  DRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLI 473
            + VIQYV+  YG+  VSQI TFGTMA+KG IRDVGRVLD  Y  CD +SKL+P +  K +
Sbjct: 419  ELVIQYVRHHYGEACVSQIATFGTMASKGVIRDVGRVLDFPYGLCDRLSKLVPVEGVKPV 478

Query: 474  TLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY 533
            +L  A + EP+    I +EE V +L+EL +++E + RNVGMHAGGVLIAP KL +FCPLY
Sbjct: 479  SLRKAREMEPEFNAVIASEEGVEELMELGERLEDLTRNVGMHAGGVLIAPGKLTDFCPLY 538

Query: 534  KQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-------- 585
              EG    +SQYDKDD+E +GL+KFDFLGL TL+I+D  + +I+ + T  ++        
Sbjct: 539  CAEGSESTVSQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVRYIQDLGTGISDLGSSNAGA 598

Query: 586  -------------FSLNKLPLNDKDTYN-LLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
                         FS+  +PL+DK TY+ + + ANT AVFQ ES+GMK+ L +A+PD  +
Sbjct: 599  GGDAKSQIQNPKSFSIENIPLDDKATYDRIFRTANTTAVFQFESRGMKDTLVKAQPDCID 658

Query: 632  EIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
            ++IAL +LYRPGPMD I ++  RKH  E    P P  + V+  TYGIMVYQEQVMQ AQ+
Sbjct: 659  DLIALNALYRPGPMDFIPDYINRKHKREQVILPHPLLEKVVGNTYGIMVYQEQVMQSAQV 718

Query: 691  LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
            + GY+LG AD+LRRA+GKKK  EM E R  F  GA K G+ + KANEIF+ +EKFAGYGF
Sbjct: 719  VAGYTLGGADMLRRAMGKKKAEEMAEQRSIFVAGAAKNGIEEKKANEIFDTMEKFAGYGF 778

Query: 751  NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
            NKSHA AY+L++Y TAYLK HY + FMA+ ++  M +T+K+    +DA++  GL IL P+
Sbjct: 779  NKSHAAAYSLVAYQTAYLKCHYPAAFMASTMTSEMVNTDKVSFFYQDAVQQ-GLKILAPD 837

Query: 811  INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDK 870
            IN S + F P+ E     K I YGLGA+KGTG++ +E IV  R  G F +LFDF  R+DK
Sbjct: 838  INSSCFRFQPVDE-----KTIAYGLGAVKGTGEAAVENIVAARAAGPFRDLFDFCHRVDK 892

Query: 871  KYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLK 930
            + +NRR I +LI +GAFD  ++ RY L+AS+D AL +AE+  +  NQ SLF +D+ + + 
Sbjct: 893  RIVNRRAIEALIRAGAFDSISDHRYQLLASLDAALGSAEQKARAANQNSLFGDDEAHAMP 952

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKP------- 983
              +    VP W  +++L +EK  LGF LS H +  +  E+  F+   L+++ P       
Sbjct: 953  --VQMADVPRWKMREQLAQEKTALGFYLSGHPYQEFAAELSNFVKHRLADITPDIVTPAG 1010

Query: 984  ------------TYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNK 1031
                          S  ++G+++ +++  T RGK+ ++ +DD S ++EV++ ++L++ N+
Sbjct: 1011 GNSGYGGGRRNNAKSIVLAGMVSGVRVLQTRRGKMAVVTLDDGSAALEVVVFSELFDSNR 1070

Query: 1032 NILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILK- 1090
              ++++ELL+VSGK   D +  ++R+ A++++D   AR  Y K+  +  +    + + + 
Sbjct: 1071 TWIRDDELLVVSGKAELDAYSGSMRVTADELYDFASARAAYAKRLDICCSIDDKVRVPQL 1130

Query: 1091 KILLRFKCKNGLPFVLYY 1108
              LL+  C    P  + Y
Sbjct: 1131 AELLKPYCGGQCPVQINY 1148


>gi|187478729|ref|YP_786753.1| DNA polymerase III subunit alpha [Bordetella avium 197N]
 gi|115423315|emb|CAJ49849.1| DNA polymerase III alpha subunit [Bordetella avium 197N]
          Length = 1163

 Score = 1157 bits (2993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1115 (49%), Positives = 772/1115 (69%), Gaps = 18/1115 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSE+S++DG++RI  +I+  A   QPA+A+TDLSNLFG+IKFYKSA   GIK
Sbjct: 9    PPFVHLRVHSEFSVVDGIVRIPGLIKRVAKLGQPAVALTDLSNLFGLIKFYKSARGAGIK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI G DVW++N+ +  KP R L+LV+NN GYL LCELLS+A++ N   GRAE+R EWL+ 
Sbjct: 69   PIAGADVWLSNDEDRDKPFRALILVRNNQGYLNLCELLSQAFLVNQYKGRAEVRREWLQG 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               Q+GLI LSG   GDIG A+  G    A   AR+W+ +FP  FYIE+QR         
Sbjct: 129  ---QEGLILLSGGRAGDIGHALDAGNTAGALALARQWAAMFPGAFYIELQRAGMDGDETY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             Q  + +A+   LP+VATHP+QFL + EF AHE R CIAEGEIL++ +R+++F+ +Q  +
Sbjct: 186  TQAAMRLAAEAGLPVVATHPVQFLDQDEFQAHEARVCIAEGEILADPRRVRRFSPQQYLQ 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM + F D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP+ ++++D+L+  S+ GL
Sbjct: 246  SSEEMHQRFADVPSALANTVEIAKRCNLSLVLGKPRLPDFPTPEGVSLDDYLVQLSEEGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D      ++  Y +RL++E  TII+M F GYFLIV DFI W KNN +PVGP
Sbjct: 306  EKRLAFLYPDEAERARQRDSYYQRLRWECSTIIQMGFPGYFLIVQDFINWGKNNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + R+RVI+YVK 
Sbjct: 366  GRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIEYVKL 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG+ AVSQI TFGT+ AK  +RD GRVLD+ Y FCD +SKLIPF P    +L   +KEE
Sbjct: 426  KYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPADPWSLERTLKEE 485

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG-I 541
            P   +R + EEEVR L++LA+ +EG+ RN+GMHAGGVLIAP KL +FCPLY Q G     
Sbjct: 486  PAFRDRYEQEEEVRALVDLAQPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENYA 545

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DKDD+E  GL+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +
Sbjct: 546  VSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNPDQRDFDIMALSLDDPAAYKV 605

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE- 658
            L  ANT AVFQLES+GMK +LK+ +P+ FE+IIA+++LYRPGP++  ++ +F  RKHG  
Sbjct: 606  LCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRA 665

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P  +  L  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR
Sbjct: 666  AVDYFHPDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHR 725

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + FQ GA+  G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK ++ + F+A
Sbjct: 726  ELFQKGAVDKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPAEFLA 785

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK----IRYG 834
            A LS  MDDT+K++I  +DA +  G+ +LPP++N S Y F P+ +      K    +RYG
Sbjct: 786  ATLSSDMDDTDKVQIFCRDA-QDNGVEVLPPDVNASGYRFAPVEDEHTARGKPPRTMRYG 844

Query: 835  LGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KGTG+  +E I+  R+  G F NLFDF +R+ K  +NRR I +LI +GAFD     
Sbjct: 845  LGAVKGTGQGAVEEILRAREADGPFVNLFDFCRRVGKHAVNRRTIEALIRAGAFDTIESN 904

Query: 894  RYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
            R  ++AS+  A++ AE+  +  NQ SLF +D +  +   L   KV  W+   +L EEK  
Sbjct: 905  RAAMLASVGTAMEAAEQAARSANQASLFGDDSSEVVAGELT--KVAPWNLHTQLTEEKAA 962

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVID 1012
            LG+  S H+F  +  E+R+ +P+ L+ ++P      + G++  +++  T RGK++  V+D
Sbjct: 963  LGYYFSGHLFDAWRDEVRRIVPMPLARIEPQRDLQWMCGVLASVRVMMTRRGKMVFAVLD 1022

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  VE+ + N+L+EK++N LKE++LLIV GKV  D +   +RI AE +FD+ +AR   
Sbjct: 1023 DGTAQVEISVFNELFEKHRNRLKEDQLLIVQGKVSNDEYSGGMRIVAENLFDLQLAREAR 1082

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
             +   +  N   + + L+++L  F+   +NG+P V
Sbjct: 1083 ARALRITVNNEADAARLRQMLNPFRAEPENGVPGV 1117


>gi|398812215|ref|ZP_10570987.1| DNA-directed DNA polymerase III PolC [Variovorax sp. CF313]
 gi|398078579|gb|EJL69475.1| DNA-directed DNA polymerase III PolC [Variovorax sp. CF313]
          Length = 1172

 Score = 1155 bits (2988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/1104 (51%), Positives = 766/1104 (69%), Gaps = 36/1104 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++VI+AAA D QPALAITDL+NLFG +KFYK    KG+KPI
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPI 61

Query: 65   IGCDVWITNEIENKKP---SRLLLLVKNNNGYLQLCELLSKAYIENINYGR--AEIRIEW 119
            IG +V++  E   K+P   +R++LLV+N  GYL L ELL++A+ +N+  G+  A  ++EW
Sbjct: 62   IGAEVFV--EGLGKEPGVLTRIVLLVQNMEGYLNLSELLARAWTQNVGRGQSQAACKMEW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            +E+     GLIALSGA  G +G  +  G+ + A   A R + IFP  FYIE+QR  +P  
Sbjct: 120  VEE--LAGGLIALSGAQAGPLGQPLLQGQGERAAELALRLAGIFPHRFYIELQRAGRPED 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A+ ++LP+VATHP+QF  + ++ AHE R CI+EGEIL N +R+++FT+EQ
Sbjct: 178  EPHVIAAVQLAARLHLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP-----KNININDFL 294
             FK+ +EM  LF D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP       + I+DF 
Sbjct: 238  YFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDFF 297

Query: 295  ISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
              +S  GL++RL +L+ D    + E+ RY +RL+FEI TI+ M F GYFLIV DFIQWAK
Sbjct: 298  RQESFDGLEQRLKHLFPDEARREAERPRYVERLEFEINTILNMGFPGYFLIVGDFIQWAK 357

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
            NN  PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   RD
Sbjct: 358  NNGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRD 417

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            RVI YVKD+YG++AVSQI TFGTMAA+ AIRDVGRVLD+ Y FCD ISKLIP KPG  +T
Sbjct: 418  RVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVT 477

Query: 475  L-------------SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
            L             + AI+ EPQLAERI+ EEEV+ L+ELA+++EG+ RN+GMHAGGVLI
Sbjct: 478  LQYPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVKMLVELAQKLEGMTRNIGMHAGGVLI 537

Query: 522  APSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINT 581
            AP KL +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI K + 
Sbjct: 538  APGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHK 597

Query: 582  KTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYR 641
               NF+   +PLND  TY L     T AVFQ ES+GM+ MLK+A+P   E++IAL +LYR
Sbjct: 598  GQENFAFENIPLNDAATYRLFSDGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYR 657

Query: 642  PGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQAD 700
            PGPMDLI +F  RKHG E   YP P   ++LSETYGIMVYQEQVMQ AQILGGYSLG AD
Sbjct: 658  PGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGAD 717

Query: 701  LLRRAIGKKKTSEMIEHRKFFQNGAIK-YGLSKHKANEIFNEIEKFAGYGFNKSHATAYA 759
            LLRRA+GKKK  EM EHR+ F+ GA+  +G+ + KA+EIF+ +EKFAGYGFNKSHA AY+
Sbjct: 718  LLRRAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNKSHAAAYS 777

Query: 760  LLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFF 819
            LL+Y+T +LK HY++ F  AN+++ MDDT+K+K+L +DA K  G++  PP++N   Y F 
Sbjct: 778  LLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRGNYRFE 837

Query: 820  PIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRII 878
            P+      +K IRYGLGA+KGTG+  +EA+V  R+ G  F +LFDF  RID++ IN+R +
Sbjct: 838  PVT-----NKIIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRTV 892

Query: 879  NSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKV 938
             +LI +GAFD   + R  L+AS+D A + A  T     Q+ +F + ++ +     + V  
Sbjct: 893  EALIKAGAFDAIQQNRASLIASVDRAFEFANATAANAAQVDIFGDAEHGSATAEPDLVDA 952

Query: 939  PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITELK 997
              W  K+ L  EK  +GF LS H+F     E+R+F    + +L  +    V +GI+++ +
Sbjct: 953  TPWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQVIAGIVSDFR 1012

Query: 998  LKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057
            +    RG++ I  +DD S+S++   +  L   N+N LK++EL+IVSG++   R     R 
Sbjct: 1013 VINGQRGRLAIFKLDDKSDSIDATADEALINANRNTLKDDELVIVSGRLQPARGGFEARF 1072

Query: 1058 NAEKIFDINVARILYGKKFSVMFN 1081
              ++++D+  AR  +GK   V  N
Sbjct: 1073 QVQQVWDLATARCRFGKFLRVAVN 1096


>gi|239816093|ref|YP_002945003.1| DNA polymerase III subunit alpha [Variovorax paradoxus S110]
 gi|239802670|gb|ACS19737.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1172

 Score = 1155 bits (2987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/1104 (51%), Positives = 772/1104 (69%), Gaps = 36/1104 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V++AAA D QPALAITDL+NLFG +KFYK   +KG+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVVKAAAADKQPALAITDLNNLFGAVKFYKQGRSKGVKPV 61

Query: 65   IGCDVWITNEIENKKP---SRLLLLVKNNNGYLQLCELLSKAYIENINYGR--AEIRIEW 119
            IG +++I  E   K+P   +R++LLV+N  GYL L ELL++A+ +N+  G+  A  ++EW
Sbjct: 62   IGAEIFI--EGLGKEPGVLTRIVLLVQNMEGYLHLSELLARAWTQNVGRGQSQAACKLEW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L++   Q GLIALSGA  G +G  +  G+ + A   A + + +FP  FYIE+QR  +P  
Sbjct: 120  LQE--LQGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQRAGRPED 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A+ + LP+VATHP+QF ++ ++ AHE R CI+EGEIL N +R++KFT+EQ
Sbjct: 178  EPHVIAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVRKFTEEQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP-----KNININDFL 294
             FK+ +EM  LF D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP       + I++F 
Sbjct: 238  YFKSSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDEFF 297

Query: 295  ISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
              +S  GL++RL +LY DP   + E+ RY +RL+FEI TI+ M F GYFLIV DFI+WAK
Sbjct: 298  RQESFLGLEERLAHLYPDPARREAERPRYVERLEFEINTILNMGFPGYFLIVGDFIKWAK 357

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
            NN  PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   RD
Sbjct: 358  NNGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRD 417

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            RVI YVKD+YG+DAVSQI TFGTMAA+ AIRDVGRVLD+ Y FCD ISKLIP KPG+ +T
Sbjct: 418  RVIDYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGQPVT 477

Query: 475  L-------------SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
            +             + AI+ EPQLA RI+ EEEVR L+ELA+++EG+ RN+GMHAGGVLI
Sbjct: 478  IQYPPNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLI 537

Query: 522  APSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINT 581
            AP KL +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI K + 
Sbjct: 538  APGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEFIVKRHK 597

Query: 582  KTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYR 641
               NF+   + L+D++TY L  +  T AVFQ ES+GM+ MLK+A+P   E++IAL +LYR
Sbjct: 598  GQENFAYENIKLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYR 657

Query: 642  PGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQAD 700
            PGPMDLI +F  RKHG E   YP P   ++LSETYGIMVYQEQVMQ AQILGGYSLG AD
Sbjct: 658  PGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGAD 717

Query: 701  LLRRAIGKKKTSEMIEHRKFFQNGAIK-YGLSKHKANEIFNEIEKFAGYGFNKSHATAYA 759
            LLRRA+GKKK  EM EHR+ F+ GA+  +G+ + KA+EIF+ +EKFAGYGFNKSHA AY+
Sbjct: 718  LLRRAMGKKKLEEMAEHREKFRAGALSTHGIPQDKADEIFDLMEKFAGYGFNKSHAAAYS 777

Query: 760  LLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFF 819
            LL+Y+T +LK HY++ F  AN+++ MDDT+K+K+L +DA K  G++  PP++N   Y F 
Sbjct: 778  LLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDVNRGNYRFE 837

Query: 820  PIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRII 878
            P+ +     K IRYGLGA+KGTG+  +EA+V  R+ G  F +LFDF  RID++ IN+R +
Sbjct: 838  PVTD-----KVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRTV 892

Query: 879  NSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKV 938
             +LI +GAFD   + R  L+AS+D A + A  T+    Q+ +F + ++ +  +    V  
Sbjct: 893  EALIKAGAFDSIQQNRASLIASVDRAFEFAAATEANAAQVDIFGDSEHGSATQEPELVDA 952

Query: 939  PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITELK 997
              W  K+ L  EK  +GF LS H+F     E+R+F    + +L  T    V +GI+++ +
Sbjct: 953  TPWGVKERLTFEKTAVGFYLSGHLFDEVAHEVRRFCKREIGDLMDTREQQVIAGIVSDFR 1012

Query: 998  LKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057
            +    RG++ I  +DD S++++   +  L   N+N LK++EL+IVSG++   R     R 
Sbjct: 1013 VINGQRGRLAIFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGRLQPGRGGFEARF 1072

Query: 1058 NAEKIFDINVARILYGKKFSVMFN 1081
              ++++D+  AR  +GK   V  N
Sbjct: 1073 QVQQVWDLATARCRFGKFLRVAVN 1096


>gi|325982112|ref|YP_004294514.1| DNA polymerase III subunit alpha [Nitrosomonas sp. AL212]
 gi|325531631|gb|ADZ26352.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212]
          Length = 1167

 Score = 1152 bits (2980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/1155 (50%), Positives = 805/1155 (69%), Gaps = 32/1155 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR+HSEYSI+D  +RI+DV++ A  D  PALA+TDL+NLFG++KFY++AY  GIK
Sbjct: 5    PAFIHLRMHSEYSILDSTIRIHDVVKKAVADQMPALALTDLANLFGLVKFYQAAYKNGIK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCD+WI NE +  KP RLL+L + + GYL L  LLS+AY EN    RAEI+  WL+ 
Sbjct: 65   PILGCDIWIANESDRSKPIRLLVLCQTHAGYLLLSRLLSRAYRENQFQNRAEIKESWLQP 124

Query: 123  NKY-QDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            + +  +GLIALSGA LGDIG+++       AE   ++W+ +FPD FY+EIQR    N   
Sbjct: 125  DDWGTEGLIALSGARLGDIGLSLLQNNILQAEIQVQKWATLFPDRFYLEIQRDGHANEAM 184

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +Q  + +A   NLP+VAT  +QFL   ++ AHE R CIAEG IL + +R K FT++Q F
Sbjct: 185  LVQHSLALAKKFNLPVVATQAVQFLNVEDYQAHEARVCIAEGYILEDKRRQKNFTQQQYF 244

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            KTQ+EM +LF DIP+A+ NTIEIAKRCNL LE G  +LP FPTP N +++ +L S+++ G
Sbjct: 245  KTQTEMTQLFADIPAALTNTIEIAKRCNLILELGVNRLPLFPTPNNESLDQYLRSQAELG 304

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L KR+ +L+ D E+      +Y+ RL+FE+ TII+M F+GYFLIV+DFI WAK+N++PVG
Sbjct: 305  LIKRMTSLFPDAEMRNDRITQYQSRLEFEVNTIIQMGFAGYFLIVADFINWAKHNNVPVG 364

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP RISMPDFDIDFC + R+ VI+YVK
Sbjct: 365  PGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERISMPDFDIDFCQDRRELVIEYVK 424

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
             RYG   VSQI TFGTMAAK  IRD+GRV+DL Y+F D ++KLIPF+ G  +TL  A + 
Sbjct: 425  QRYGIGKVSQIATFGTMAAKAVIRDIGRVMDLPYNFVDQLAKLIPFEIG--MTLKKARQL 482

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EPQL +R + EE+VR L+ELA+ +EGI RNVGMHAGGVLIA S++ +FCP+Y  E    +
Sbjct: 483  EPQLNQRAE-EEDVRNLLELAESLEGITRNVGMHAGGVLIASSEITDFCPIYCTESGDSV 541

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDK 596
            +SQ DKDD+E+IGL+KFDFLGL TL+ILD+ + +I++++    +     FSL  LPL+D 
Sbjct: 542  VSQLDKDDVEKIGLVKFDFLGLRTLTILDRAVGYIRQLHPNIDSPESRLFSLETLPLDDD 601

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
             TY L++K N V +FQ ES+GM ++L++AKPD+FE+IIAL++LYRPGPMDLI  F  RKH
Sbjct: 602  ATYALMRKGNAVGIFQFESRGMIDLLQKAKPDHFEDIIALVALYRPGPMDLIPEFIDRKH 661

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G +   Y DPR + +L  TYGIM+YQEQVMQIAQ++GGYSLG ADLLRRA+GKKK  EM 
Sbjct: 662  GRKQIEYLDPRLEPILGPTYGIMIYQEQVMQIAQVIGGYSLGSADLLRRAMGKKKVEEMA 721

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R  F +GAI  GLS+ KA E+F  +EKFAGYGFNKSHA AYAL+++ TAYLK HY + 
Sbjct: 722  QQRDIFVSGAINNGLSEDKATELFGLMEKFAGYGFNKSHAAAYALIAFQTAYLKAHYPAE 781

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA LS  MDDT+K+ I V+D+I   G+ ILPP+INLS Y F P+       K IR+GL
Sbjct: 782  FMAACLSADMDDTDKVHIFVEDSIAN-GIIILPPDINLSDYRFIPV-----DSKNIRFGL 835

Query: 836  GAIKGTGKSTIEAIVT-ERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GA+KGTG+S + +I+   R+ G FT+LFDF  R+D++  NRR++ SLI  GAFD  N  R
Sbjct: 836  GAVKGTGESAVNSIIAVRRQTGPFTDLFDFCNRVDRRIANRRVMESLIRVGAFDIINPNR 895

Query: 895  YMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
              L+AS+ +A+++AE+T +  NQ++LF  + +++ +     ++  SW  +++L +EK  L
Sbjct: 896  ASLMASVGLAIESAEQTSQSSNQINLF-GETSSDAQMQPQLIQAESWHDREKLHQEKIGL 954

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDD 1013
            G+  S H F  Y +E++ FI   L  L P      ++GII  ++ + T RGK+ +I +DD
Sbjct: 955  GYYFSGHPFDTYASELKHFICTRLDRLNPQREPQLLAGIIHSIRTQMTRRGKMGVINLDD 1014

Query: 1014 NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF----LKNIRINAEKIFDINVAR 1069
                +EV+I ++L++ N+  LKE++LLI   K+    +       +RI AE+++++   R
Sbjct: 1015 GKARIEVVIFSELFDANRTWLKEDQLLIAEAKISMRAYNGDEEDGLRITAERLYNLAAIR 1074

Query: 1070 ILYGKKFSVMFNRTF--NISILKKILLRFKCKNG------LPFVLYYCINKSIKYEMKFP 1121
              + K+  +  N      +S LKK+L+ F  +         P  + Y  N     E++  
Sbjct: 1075 SRFAKQIKIYCNLLTLDQLSGLKKLLIPFSTQTQKSIADFCPITVVYR-NDRASGELELG 1133

Query: 1122 LNYKVQPIDDLKLAL 1136
             +++V   +DL  +L
Sbjct: 1134 NDWRVHLHEDLLQSL 1148


>gi|319794191|ref|YP_004155831.1| DNA polymerase iii subunit alpha [Variovorax paradoxus EPS]
 gi|315596654|gb|ADU37720.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS]
          Length = 1172

 Score = 1151 bits (2978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/1104 (51%), Positives = 762/1104 (69%), Gaps = 36/1104 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++VI+AAA D QPALAITDL+NLFG +KFYK    KG+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61

Query: 65   IGCDVWITNEIENKKP---SRLLLLVKNNNGYLQLCELLSKAYIENINYGR--AEIRIEW 119
            IG +++I  E   K+P   +RL+LLV+N  GYL L ELL++A+ +N+  G+  A  ++EW
Sbjct: 62   IGAEIFI--EGLGKEPGVLTRLVLLVQNMEGYLSLSELLARAWTQNVGRGQSQAACKLEW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            LE+     GLIALSGA  G +G+ +  G+ + A   A + + +FP  FYIE+QR  +P  
Sbjct: 120  LEE--LSGGLIALSGAQAGPLGVPLLQGQGERAAELALKLAGMFPHRFYIELQRAGRPED 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A+ + LP+VATHP+QF ++ ++ AHE R CI+EGEIL N +R++KFT+EQ
Sbjct: 178  EPHVIAAVKLAARLKLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVRKFTEEQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP-----KNININDFL 294
             FK+ +EM  LF D+PSA+ NT+EIAKRCNL L  GKP+LP FPTP       + I+DF 
Sbjct: 238  YFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFVSEGVRMPIDDFF 297

Query: 295  ISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
              +S  GL+ RL +LY D      E+ RY +RL+FEI TI+ M F GYFLIV DFI+WAK
Sbjct: 298  RQESFEGLEVRLAHLYPDAAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGDFIKWAK 357

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
             N  PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   RD
Sbjct: 358  ENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRD 417

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            RVI YVKD+YG++AVSQI TFGTMAA+ AIRDVGRVLD+ Y FCD ISKLIP KPG  +T
Sbjct: 418  RVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVT 477

Query: 475  L-------------SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
            L             + AI+ EPQLA+RI+ EEEVR L+ELA+++EG+ RN+GMHAGGVLI
Sbjct: 478  LQYPPEKKIEGDKNNYAIEMEPQLAQRIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLI 537

Query: 522  APSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINT 581
            AP KL +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI   + 
Sbjct: 538  APGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKDFIVARHK 597

Query: 582  KTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYR 641
               NF+   +PL D  TY L  +  T AVFQ ES+GM+ MLK+A+P   E++IAL +LYR
Sbjct: 598  GQENFAFENIPLKDAATYRLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYR 657

Query: 642  PGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQAD 700
            PGPMDLI +F  RKHG E   YP P   ++LSETYGIMVYQEQVMQ AQILGGYSLG AD
Sbjct: 658  PGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGAD 717

Query: 701  LLRRAIGKKKTSEMIEHRKFFQNGAIK-YGLSKHKANEIFNEIEKFAGYGFNKSHATAYA 759
            LLRRA+GKKK  EM EHR+ F+ GA+  +G+ + KA+EIF+ +EKFAGYGFNKSHA AY+
Sbjct: 718  LLRRAMGKKKLEEMAEHREKFRAGALATHGIPQDKADEIFDLMEKFAGYGFNKSHAAAYS 777

Query: 760  LLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFF 819
            LL+Y+T +LK HY++ F  AN+++ MDDT+K+K+L +DA K  G++  PP++N   Y F 
Sbjct: 778  LLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRGNYRFE 837

Query: 820  PIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRII 878
            P+ +     K IRYGLGA+KGTG+  +EA+V  R+ G  F +LFDF  RID++ IN+R +
Sbjct: 838  PVTD-----KVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRTV 892

Query: 879  NSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKV 938
             +LI +GAFD   + R  L+AS+D A + A  T     Q+ +F + ++ +     + V  
Sbjct: 893  EALIKAGAFDAIQQNRAALIASVDRAFEFASATAANAAQVDIFGDAEHGSATAEPDLVDA 952

Query: 939  PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITELK 997
              W  K+ L  EK  +GF LS H+F     E+R+F    + +L  +    V +GI+++ +
Sbjct: 953  TPWGVKERLTLEKTAIGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQVIAGIVSDFR 1012

Query: 998  LKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057
            +    RG++ I  +DD S S++   +  L   N+N LK++EL+IVSG++   R     R 
Sbjct: 1013 VINGQRGRLAIFKLDDKSESIDATADEALINANRNTLKDDELVIVSGRLQPARGGFEARF 1072

Query: 1058 NAEKIFDINVARILYGKKFSVMFN 1081
              ++++D+  AR  +GK   V  N
Sbjct: 1073 QVQQVWDLATARCRFGKFLRVAVN 1096


>gi|91775600|ref|YP_545356.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT]
 gi|91709587|gb|ABE49515.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT]
          Length = 1149

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/1141 (50%), Positives = 784/1141 (68%), Gaps = 24/1141 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR HSEYS++DG +RI D ++ A  D  PALA+TDLSNLFG IKFYK+A  KG+K
Sbjct: 4    PSFIHLRCHSEYSVVDGTVRIGDYVKQAVADQMPALALTDLSNLFGAIKFYKAARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D+W+ NE +  +P RLLLL  ++ GYL+LCELLS+A++ N   GRAEI+ EWL +
Sbjct: 64   PLIGADIWLENESKRDQPYRLLLLCHSHVGYLRLCELLSRAFLHNQYRGRAEIKREWLRE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LSGA  GDIG A+  G    A+  A  W+ +FP  FYIE+QR   P     
Sbjct: 124  GG-TEGLILLSGAMAGDIGQALLQGNFSQAQTLAGEWAALFPQRFYIELQRAGHPQQEAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   + +AS + LP+VATHP+QF+   +F AHE R CIAEG +L++ +R K FT EQ FK
Sbjct: 183  IASALALASELELPVVATHPVQFMAPDDFKAHEARVCIAEGYVLADNRRPKLFTPEQYFK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q++M +LF DIP A+ N++EIAKRCNL L  GK  LP+FPTP   +++++L++++K GL
Sbjct: 243  SQAQMAELFADIPEALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESLDEYLVAQAKAGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D    + ++  Y+ RLQFE   II+M F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EERLKVLFPDEGQREAKRPEYEARLQFETNIIIQMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DP+ Y LLFERFLNP R+SMPDFDIDFC EGRDRVI YVK 
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPMRYALLFERFLNPERVSMPDFDIDFCQEGRDRVIDYVKR 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK  IRDVGRVLDL ++F DS++KLIP + G  I+LS A+++E
Sbjct: 423  KYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFTFVDSVAKLIPNELG--ISLSEALEKE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER + EEEV +L+ELA ++EG+ RN+GMHAGGVLI+P K+ +F P+Y Q     ++
Sbjct: 481  PQLKERREQEEEVAELLELALRLEGLTRNIGMHAGGVLISPGKISDFSPVYCQASGESVV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYF--IKKINTKTTNFSLNKLPLNDKDTYN 600
            SQYDKDD+E +GL+KFDFLGL TL+IL   +    +++            LP++DK +Y 
Sbjct: 541  SQYDKDDVEAVGLVKFDFLGLRTLTILAMALESANLQRAEHGLEPLDFETLPIDDKASYQ 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EY 659
            LLK ANT AVFQLES+GMK+MLK+AKPD FE+IIAL++LYRPGPMDLI +FCRRKHG + 
Sbjct: 601  LLKAANTTAVFQLESRGMKDMLKQAKPDVFEDIIALVALYRPGPMDLIPDFCRRKHGLQR 660

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
              YP P T+ +L ETYGIMVYQEQVMQIAQ++ GYSLG ADLLRRA+GKKK  EM + R 
Sbjct: 661  VEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKPEEMAKQRS 720

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA+K G S+ +A E+F+ +EKFA YGFNKSHA AYAL++Y TAYLK HY + F+AA
Sbjct: 721  IFIEGAVKNGTSEKQAGELFDLMEKFASYGFNKSHAAAYALVAYQTAYLKAHYPAAFLAA 780

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  M++T+ I +   D I   GL +LPP+IN S+Y F PI       K+I YGLGAIK
Sbjct: 781  TMSADMNNTDNIHLFYDDCIFN-GLEVLPPDINASEYRFKPI-----NAKQILYGLGAIK 834

Query: 840  GTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG + IE I+  R+  G F +LFDF  R+D + +NRR+I SLI +GAFD     R  L+
Sbjct: 835  GTGWAAIELILAARQEGGPFKDLFDFCSRLDLRKVNRRVIESLIRAGAFDKLEPNRAALL 894

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A + +A+  AE++     Q SLF +  ++ +       + P W++KQ L EEK  LGF  
Sbjct: 895  AGVSLAISAAEQSGAASGQDSLFGSVIDSAVH---VLPETPPWTEKQRLQEEKAALGFYF 951

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPT-YSCTVSGIITELKLKTTYRGKILIIVIDDNSNS 1017
            S H +  Y+ E+  F+   L+ LKP+     ++G++  ++++ T RGK+ I+ +DD +  
Sbjct: 952  SGHPYADYQKEVATFVRSNLANLKPSDQPQLLAGVVMGVRIRMTGRGKMAIVTLDDMAGR 1011

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            V+++++ +L  ++  +LKE++LL+V G+V  D F   +R+NA ++ DI  AR  Y     
Sbjct: 1012 VDIVVSGELLNEHATLLKEDQLLVVEGRVSHDDFSGGLRVNARRLTDIAGARNAYANLLK 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNGLPFVLYYCI------NKSIKYEMKFPLNYKVQPIDD 1131
            +  N   +   L+ +L  ++   G P     C       N   + E+    +++V   D+
Sbjct: 1072 LSCNGQSDAGKLRALLSPYRSA-GSPEAGRGCAVKIAYHNDEAQAELMLGDDWRVALQDE 1130

Query: 1132 L 1132
            L
Sbjct: 1131 L 1131


>gi|395006460|ref|ZP_10390278.1| DNA-directed DNA polymerase III PolC [Acidovorax sp. CF316]
 gi|394315552|gb|EJE52346.1| DNA-directed DNA polymerase III PolC [Acidovorax sp. CF316]
          Length = 1187

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/1109 (51%), Positives = 755/1109 (68%), Gaps = 36/1109 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HLRLH+EYS++DG  RI++V +AAA D QPALAITDL+NLFG IKFYK A  KG
Sbjct: 1    MEPMFVHLRLHTEYSVVDGTNRIDEVAKAAAVDGQPALAITDLNNLFGAIKFYKEARGKG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KP++G ++++  E     PSR+++LV+N  GYL L ELL++A+  NI    A    EWL
Sbjct: 61   VKPLLGAEIFLEGE-GTAPPSRMIVLVQNRQGYLSLSELLARAWTRNIVKNLAVCTWEWL 119

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLI LSGA  G +G A+  G +  A + A R + IFP  FYIE+QR  +P+  
Sbjct: 120  QE--LSEGLIVLSGAQAGPVGQALLKGDDAGAADLALRLAGIFPHRFYIELQRAGRPDDE 177

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +     +A+ ++LP+VATHP+QF     + AHE R CIAEGEIL+N +R+++FT+EQ 
Sbjct: 178  AHVVAAAQLAARLHLPVVATHPVQFADAEGYEAHEARVCIAEGEILANPRRVRRFTREQY 237

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FK+ ++M  LF DIPSAI NT+EIA+RCNL L  GKP+LP FPTP  + I+++    S  
Sbjct: 238  FKSSAQMQALFADIPSAIANTVEIAQRCNLTLVLGKPQLPDFPTPNGMPIDEYFRFASFE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL+ RL  L+K       ++ RY +RL+FEI TI+KM F GYFLIV DFIQWAK+N  PV
Sbjct: 298  GLEARLKMLFKKEADRDLQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIQWAKDNGCPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YV
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL----- 475
            KD+YGK+AVSQI TFGT+AAK AIRDVGRV+D+ Y FCD ISKL+P KPG   TL     
Sbjct: 418  KDKYGKNAVSQIATFGTLAAKAAIRDVGRVMDMSYMFCDGISKLVPGKPGMSYTLQYPPA 477

Query: 476  --------SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLI 527
                    + A++ EP LAER+  EE+VR +IE+A+++EG+ RN+GMHAGGVLIAP KL 
Sbjct: 478  VKKEGDKNNYALELEPLLAERVAKEEDVRTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLT 537

Query: 528  NFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS 587
            +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI K +    NF+
Sbjct: 538  DFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQENFT 597

Query: 588  LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
               +PL+D  TY L     T AVFQ ES+GM+ ML+EA+P   E++IAL +LYRPGPMDL
Sbjct: 598  FEAIPLDDGPTYTLFSDGKTEAVFQFESRGMQGMLREARPSRLEDLIALNALYRPGPMDL 657

Query: 648  IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            I +F  RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+
Sbjct: 658  IPSFVNRKHGKEVVEYPHPLVEKVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAM 717

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM EHR  F+ GA K  +S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T 
Sbjct: 718  GKKKAEEMAEHRLIFRAGAAKQDISEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTG 777

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY++ F  AN+++ MDDT+K+K+L +DA K  G++   P++N   Y F P+ +   
Sbjct: 778  WLKVHYTAEFFCANMTVEMDDTDKLKVLFEDARKNFGMNFELPDVNRGMYRFEPVTD--- 834

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRR 876
              K IRYGLGA+KG G++ IEAIV  R+           G F +LFDF  R+D+  +N+R
Sbjct: 835  --KVIRYGLGAVKGGGQAAIEAIVAAREGRGEGPNGSTKGPFKSLFDFCLRVDRARMNKR 892

Query: 877  IINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYL 933
             + +LI +GAFD  N  R  L+ASID A   A  +   INQ  LF    +D + +  +  
Sbjct: 893  TVEALIKAGAFDSLNLNRASLLASIDRAFDFAAASLSNINQGGLFDMMGDDAHGSSTQEP 952

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGI 992
              V V  W  K+ L  EK  +GF LS H+F    TE+R+F+   + EL  +    + +GI
Sbjct: 953  ELVDVTPWGIKERLTLEKTAVGFYLSGHLFDEVATEVRRFVRTQIDELLDSREPQILAGI 1012

Query: 993  ITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
            I++ ++    RGK+ +  +DD S  +E   +  L    KN LKE+E +++ G++  DRF 
Sbjct: 1013 ISDFRVINGQRGKLALFKLDDKSAVIEASADEALINTYKNQLKEDEFVVMMGRLQLDRFS 1072

Query: 1053 KNIRINAEKIFDINVARILYGKKFSVMFN 1081
              +R+  ++++D+  AR  +GK   V+ +
Sbjct: 1073 GGLRVKVQQVWDLAGARARFGKYLHVVVS 1101


>gi|253999458|ref|YP_003051521.1| DNA polymerase III subunit alpha [Methylovorus glucosetrophus SIP3-4]
 gi|253986137|gb|ACT50994.1| DNA polymerase III, alpha subunit [Methylovorus glucosetrophus
            SIP3-4]
          Length = 1149

 Score = 1146 bits (2964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/1141 (50%), Positives = 797/1141 (69%), Gaps = 24/1141 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR HSEYS++DG +RI D ++AAA D  PALA+TDLSNLFG +KFYKSA  KG+K
Sbjct: 4    PTFIHLRCHSEYSVVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++GCD+W+ NE    +P RLLLL + + GYL+LCELLS+AY+EN + GRAEI+ +WL +
Sbjct: 64   PVLGCDLWLENETNRDQPYRLLLLCQTHAGYLKLCELLSRAYLENQHRGRAEIKRQWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LSGA  GD+G A+  G    A   A++W+ +FP+ FYIE+QR       F 
Sbjct: 124  AG-GEGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQRAGHAQQEFY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I + + +A +++LP+VATHP+QF++  +F AHE R CIAEG +L++ +R K FT EQ FK
Sbjct: 183  ISRALALAGDLDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPKHFTPEQFFK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM  LF D+P A+ N++EIAKRCNL L  GK  LP+FPTP   +++++L+ ++K GL
Sbjct: 243  TQAEMAALFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESLDEYLVVQAKLGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D  +   ++  Y  RL+FE   II+M F GYFLIV+DFI WAKNN +PVGP
Sbjct: 303  EKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADFINWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA S+VAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI YVK 
Sbjct: 363  GRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQEGRDRVIDYVKH 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG  +VSQI TFGTMAAK  IRDVGRVLDL ++F D I+KLIP + G  ITLS+A+++E
Sbjct: 423  KYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNELG--ITLSDALEKE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL ER + EEEV +L+ELA ++EG+ RN+GMHAGGVLI+P K+ +F P+Y Q+    ++
Sbjct: 481  PQLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISDFSPIYCQQNGESLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTI--YFIKKINTKTTNFSLNKLPLNDKDTYN 600
            SQYDKDD+E +GL+KFDFLGL TL+IL   +     ++   +        LP+NDK TY 
Sbjct: 541  SQYDKDDVEAVGLVKFDFLGLRTLTILAMALENANAQRALKELPPLDFETLPINDKPTYQ 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY- 659
            LLK ANT AVFQLES+GMK+MLK+AKPD FE+IIAL++LYRPGPMDLI +FCRRKHG+  
Sbjct: 601  LLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCRRKHGQQR 660

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
              YP P T+ +L ETYGIMVYQEQVMQIAQ++ GYSLG ADLLRRA+GKKK  EM   R 
Sbjct: 661  VEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKKEEMDAQRA 720

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA+K G  + +A E+F+ +EKFA YGFNKSHA AYAL++Y+TAYLK HY + F+AA
Sbjct: 721  VFVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAYLKAHYPAAFLAA 780

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  M++T+ + I   D     G+ +L P+IN S++ F PI  SD   K++ YGLGA+K
Sbjct: 781  TMSADMNNTDSVHIFYDDCAAN-GVEVLAPDINQSEFRFKPI--SD---KQVLYGLGAVK 834

Query: 840  GTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG + IE I+  R+  G F +LFDF +R+D + +NRR+I SLI +GAFD     R  L+
Sbjct: 835  GTGWAAIEVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEPNRAALL 894

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A + +A+  AE++     Q SLF  + ++++   L   KV +WS++++L +EK  LGF  
Sbjct: 895  AGVSLAISAAEQSGAASGQNSLF-GEMSDSVAHTLP--KVNAWSEQEKLQQEKSALGFYF 951

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPT-YSCTVSGIITELKLKTTYRGKILIIVIDDNSNS 1017
            S H +  Y+ E+  F+   L  LKP      ++G++  ++++ T RGK+ I+ +DD ++ 
Sbjct: 952  SGHPYEGYKRELATFVRTTLGNLKPQDQPQLLAGVVMGIRIRMTQRGKMAIVTLDDATSR 1011

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +E+++ N+L  +++++LKE+ L+IV G+V  D F   +R+NA K++D+  AR        
Sbjct: 1012 IEIVVGNELLNQSQHLLKEDALVIVEGRVSNDDFSGGLRVNARKVYDLAAARSANASLLK 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNGLPFVLYYCI------NKSIKYEMKFPLNYKVQPIDD 1131
            +  N   +   L++IL  + C+ G      +C       N S + E+     ++V+  D+
Sbjct: 1072 ISCNGQADAGRLREILAPY-CRQGGEEERRHCAVKIEYHNGSARVELMLGEQWRVELHDE 1130

Query: 1132 L 1132
            L
Sbjct: 1131 L 1131


>gi|407938888|ref|YP_006854529.1| DNA polymerase III subunit alpha [Acidovorax sp. KKS102]
 gi|407896682|gb|AFU45891.1| DNA polymerase III subunit alpha [Acidovorax sp. KKS102]
          Length = 1177

 Score = 1144 bits (2959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/1102 (51%), Positives = 754/1102 (68%), Gaps = 37/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V +AAA D QPALAITDL+NLFG IKFYK A  KG+KPI
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVAKAAAKDGQPALAITDLNNLFGAIKFYKEARGKGVKPI 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++++  E     PSRL++LV++  GYL L ELL++A+  N+    A     WLE+  
Sbjct: 62   LGAEIFLEGEA-GAPPSRLIVLVQSRQGYLNLSELLARAWTRNVVKNLALSTWAWLEE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALSGA  G +G A+  G    A + A R + IFP  FY+E+QR  + +    + 
Sbjct: 119  LSEGLIALSGAQAGPVGQALMKGDESGAADIALRLAGIFPHRFYVELQRAGRTDDEAHVV 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
                +A+ ++LP+VATHPIQF    ++ AHE R CIAEGEIL+N +R++KFT++Q FKT 
Sbjct: 179  AAAQLAARLSLPVVATHPIQFAGPDDYEAHEARICIAEGEILANPRRVRKFTRDQYFKTS 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSAI NT+EIA+RCNL L  GKP+LP FPTP  + I+++    S  GL++
Sbjct: 239  AEMEALFADLPSAIANTVEIAQRCNLTLVLGKPQLPDFPTPNGMPIDEYFRYASFEGLEE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL +L+ D      ++ RY +RL+FE+ TI+KM F GYFLIV DFIQWAKNN  PVGPGR
Sbjct: 299  RLKHLFPDEAERDKQRPRYVERLEFELGTILKMGFPGYFLIVGDFIQWAKNNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVKD+Y
Sbjct: 359  GSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKDKY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GK+AVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD ISKL+P KPG   TL+        
Sbjct: 419  GKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLAYPPEVKKE 478

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP L ER++ EE+V+ +IE+A+++EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 479  GDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI K +    NF+   +
Sbjct: 539  LYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIIKRHKGQENFAFENI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L  +  T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI +F
Sbjct: 599  PLDDGPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPSF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 659  VNRKHGKEEVIYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR  F+ GA + G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  AEEMAEHRAIFRKGAAEKGISQEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA K  GLS  PP++N   Y F P+ +     K 
Sbjct: 779  HYTAEFFCANMTVEMDDTDKLKVLFEDAQK-MGLSFEPPDVNRGFYRFEPVTD-----KI 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEAIV  R+           G F +LFDF  R+DK  +N+R + +
Sbjct: 833  IRYGLGAVKGTGQQAIEAIVAAREGRGEGPQGSTKGPFKSLFDFCVRVDKARMNKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD  +  R  LVASID A   A      +NQ  LF    +D + +  +  + V 
Sbjct: 893  LIKAGAFDTIHLNRAALVASIDRAFDFAAAMLANVNQGGLFDMMGDDAHGSSTQEPDLVD 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITEL 996
               W  K+ L  EK  +GF LS H+F    TE+R+F+   + EL  +    V +GII++ 
Sbjct: 953  ATPWGIKERLTLEKTAVGFYLSGHLFDEVATEVRRFVRTQIDELLDSREPQVLAGIISDF 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++    RGK+ +  +DD S  +E   +  L    +N LKE+E +++ G++  D F   +R
Sbjct: 1013 RVINGQRGKLGLFKLDDKSAVIEASADEALLNTYRNQLKEDEFVVMMGRLQLDHFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            +  ++++D+  AR  +GK   V
Sbjct: 1073 VKVQQVWDLAGARCRFGKYLHV 1094


>gi|221067306|ref|ZP_03543411.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
 gi|220712329|gb|EED67697.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
          Length = 1177

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1102 (50%), Positives = 757/1102 (68%), Gaps = 37/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  R+N +I+AAA D Q A+AITD +NLFG IKFY+    KG+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++ +   + +  PSR+++LV++  GY  + ELL++ +  N+   +A+ + EWL++  
Sbjct: 62   LGAEI-VLEGLGDAPPSRVIVLVQSRQGYHNIAELLARGWTRNVVRDQAQHKWEWLQE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI LSGA  G +GIA+  G    A   A+R + +FP  FYIE+QR  +P+    + 
Sbjct: 119  LGEGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAGRPDDESHVL 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +AS +NLP+VATHPIQ+ K  ++ AHE R CIAEGEIL N KR++KFT++Q FKT 
Sbjct: 179  AAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKFTRDQYFKTA 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM +LF DIPSAI+NT+EIA+RC+L LE G P+LP FP P  +++++F   +S  GL++
Sbjct: 239  AEMEQLFCDIPSAIENTVEIARRCSLTLELGNPQLPNFPVPAGMSMDEFFRHESYQGLEE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL++LY D      ++ RY +RL+FE+ TI+KM F GYFLIVSDFI+WAK N  PVGPGR
Sbjct: 299  RLVHLYPDAAKRDAQRARYVERLEFELGTIMKMGFPGYFLIVSDFIKWAKANGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY L +TD+DPL YNLLFERFLNP R+SMPDFD+DFC + RDRVI YVKDRY
Sbjct: 359  GSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQNRDRVIDYVKDRY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL--------- 475
            G+DAVSQI TFGTMAA+ AIRDVGRVLD+ Y+FCD ISKLIP KPG  +TL         
Sbjct: 419  GRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGLHVTLKYPPNPPKE 478

Query: 476  ----SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                + AIKEEP LAERI+ EE+V+ LIE+A+ +EG+ RN+GMHAGGV+IAP +L +FCP
Sbjct: 479  GDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGGVVIAPGRLADFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G T  ++ YDKDD+E +GL+KFDFLGL TL+IL+    FI K +    NF    +
Sbjct: 539  LYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHKGQENFQFENI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEAKP   E++IAL +LYRPGPMDLI  F
Sbjct: 599  PLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNALYRPGPMDLIPTF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG ADLLRRA+GKKK
Sbjct: 659  IARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM++HR  F+ GA K GLS+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  VEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F   N+++ MD+T+K+K+L +DA+K  G++   P++N   + F P+ +     K 
Sbjct: 779  HYTAEFYCGNMTVEMDNTDKLKVLYEDALKM-GITFEMPDVNRGVHRFEPVTD-----KV 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTER----------KFGFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGAIKGTG++ IEAIV  R          + G F +LFDF  R+D+  IN+R + +
Sbjct: 833  IRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHETGPFKSLFDFCLRVDRSRINKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLN---YVK 937
            LI  GAFD  +  R  L+A++D A   A  +    +Q  LF    ++ L           
Sbjct: 893  LIKGGAFDSIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSSTAEPPMAD 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITEL 996
            V  W  K++L  EK  +GF L+ H+F   E E+R+F+   + E++ +    T++GII  L
Sbjct: 953  VLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQTMAGIIGGL 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +     RGK+ I  +DD S  +E  ++ +      ++LKE+E ++VSG++  DRF   +R
Sbjct: 1013 RTINGQRGKLSIFTLDDKSAVIEASVDEKTMAACADVLKEDEFVVVSGRLQPDRFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            +  ++++ +  AR  + +   V
Sbjct: 1073 MKVQQMWSLADARCRFARYLQV 1094


>gi|264678275|ref|YP_003278182.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208788|gb|ACY32886.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2]
          Length = 1177

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1102 (50%), Positives = 756/1102 (68%), Gaps = 37/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  R+N +I+AAA D Q A+AITD +NLFG IKFY+    KG+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++ +   + +  PSR+++LV++  GY  + ELL++ +  N+   +A+ + EWL++  
Sbjct: 62   LGAEIMLEG-LGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQHKWEWLQE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI LSGA  G +GIA+  G    A   A+R + +FP  FYIE+QR  + +    + 
Sbjct: 119  LGEGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAGRADDESHVL 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +AS +NLP+VATHPIQ+ K  ++ AHE R CIAEGEIL N KR++KFT++Q FKT 
Sbjct: 179  AAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKFTRDQYFKTA 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM +LF DIPSAI+NT+EIA+RC+L LE G P+LP FP P  +++++F   +S  GL++
Sbjct: 239  AEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSMDEFFRHESYQGLEE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL++LY D      ++ RY +RL+FE+ TI+KM F GYFLIVSDFI+WAK N  PVGPGR
Sbjct: 299  RLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIKWAKANGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY L +TD+DPL YNLLFERFLNP R+SMPDFD+DFC + RDRVI YVKDRY
Sbjct: 359  GSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQNRDRVIDYVKDRY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL--------- 475
            G+DAVSQI TFGTMAA+ AIRDVGRVLD+ Y+FCD ISKLIP KPG  +TL         
Sbjct: 419  GRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGLHVTLKYPPNPPKE 478

Query: 476  ----SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                + AIKEEP LAERI+ EE+V+ LIE+A+ +EG+ RN+GMHAGGV+IAP +L +FCP
Sbjct: 479  GDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGGVVIAPGRLADFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G T  ++ YDKDD+E +GL+KFDFLGL TL+IL+    FI K +    NF    +
Sbjct: 539  LYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHKGQENFQFENI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEAKP   E++IAL +LYRPGPMDLI  F
Sbjct: 599  PLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNALYRPGPMDLIPTF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG ADLLRRA+GKKK
Sbjct: 659  IARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM++HR  F+ GA K GLS+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  VEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F   N+++ MD+T+K+K+L +DA+K  G++   P++N   Y F P+ +     K 
Sbjct: 779  HYTAEFYCGNMTVEMDNTDKLKVLYEDALK-MGITFEMPDVNRGVYRFEPVTD-----KV 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTER----------KFGFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGAIKGTG++ IEAIV  R          + G F +LFDF  R+D+  IN+R + +
Sbjct: 833  IRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRINKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLN---YVK 937
            LI  GAFD  +  R  L+A++D A   A  +    +Q  LF    ++ L           
Sbjct: 893  LIKGGAFDTIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSSTAEPPMAD 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITEL 996
            V  W  K++L  EK  +GF L+ H+F   E E+R+F+   + E++ +    T++GII  L
Sbjct: 953  VLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQTMAGIIGGL 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +     RG++ I  +DD S  +E  ++ +      ++LKE+E ++VSG++  DRF   +R
Sbjct: 1013 RTINGQRGRLSIFTLDDKSAVIEASVDEKTMAACADVLKEDEFVVVSGRLQPDRFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            +  ++++ +  AR  + +   V
Sbjct: 1073 MKVQQMWSLADARCRFARYLQV 1094


>gi|299533528|ref|ZP_07046905.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
 gi|298718486|gb|EFI59466.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
          Length = 1177

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1102 (50%), Positives = 756/1102 (68%), Gaps = 37/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  R+N +I+AAA D Q A+AITD +NLFG IKFY+    KG+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++ +   + +  PSR+++LV++  GY  + ELL++ +  N+   +A+ + EWL++  
Sbjct: 62   LGAEIMLEG-LGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQHKWEWLQE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI LSGA  G +GIA+  G    A   A+R + +FP  FYIE+QR  + +    + 
Sbjct: 119  LGEGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAGRADDESHVL 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +AS +NLP+VATHPIQ+ K  ++ AHE R CIAEGEIL N KR++KFT++Q FKT 
Sbjct: 179  AAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKFTRDQYFKTT 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM +LF DIPSAI+NT+EIA+RC+L LE G P+LP FP P  +++++F   +S  GL++
Sbjct: 239  AEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSMDEFFRHESYQGLEE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL++LY D      ++ RY +RL+FE+ TI+KM F GYFLIVSDFI+WAK N  PVGPGR
Sbjct: 299  RLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIKWAKANGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY L +TD+DPL YNLLFERFLNP R+SMPDFD+DFC + RDRVI YVKDRY
Sbjct: 359  GSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQNRDRVIDYVKDRY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL--------- 475
            G+DAVSQI TFGTMAA+ AIRDVGRVLD+ Y+FCD ISKLIP KPG  +TL         
Sbjct: 419  GRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGLHVTLKYPPNPPKE 478

Query: 476  ----SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                + AIKEEP LAERI+ EE+V+ LIE+A+ +EG+ RN+GMHAGGV+IAP +L +FCP
Sbjct: 479  GDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGGVVIAPGRLADFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G T  ++ YDKDD+E +GL+KFDFLGL TL+IL+    FI K +    NF    +
Sbjct: 539  LYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHKGQENFQFENI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEAKP   E++IAL +LYRPGPMDLI  F
Sbjct: 599  PLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNALYRPGPMDLIPTF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG ADLLRRA+GKKK
Sbjct: 659  IARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM++HR  F+ GA K GLS+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  VEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F   N+++ MD+T+K+K+L +DA+K  G++   P++N   Y F P+ +     K 
Sbjct: 779  HYTAEFYCGNMTVEMDNTDKLKVLYEDALK-MGITFEMPDVNRGVYRFEPVTD-----KV 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTER----------KFGFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGAIKGTG++ IEAIV  R          + G F +LFDF  R+D+  IN+R + +
Sbjct: 833  IRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRINKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLN---YVK 937
            LI  GAFD  +  R  L+A++D A   A  +    +Q  LF    ++ L           
Sbjct: 893  LIKGGAFDTIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSSTAEPPMAD 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITEL 996
            V  W  K++L  EK  +GF L+ H+F   E E+R+F+   + E++ +    T++GII  L
Sbjct: 953  VLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQTMAGIIGGL 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +     RG++ I  +DD S  +E  ++ +      ++LKE+E ++VSG++  DRF   +R
Sbjct: 1013 RTINGQRGRLSIFTLDDKSAVIEASVDEKTMAACADVLKEDEFVVVSGRLQPDRFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            +  ++++ +  AR  + +   V
Sbjct: 1073 MKVQQMWSLADARCRFARYLQV 1094


>gi|260222868|emb|CBA32866.1| DNA polymerase III subunit alpha [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1244

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/1121 (50%), Positives = 771/1121 (68%), Gaps = 44/1121 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI+DVI+ AA D QPALAITDL+NLFG IKFYK    KG+KP+
Sbjct: 57   FVHLRLHTEFSVVDGTTRIDDVIKMAAKDGQPALAITDLNNLFGAIKFYKGGRGKGVKPV 116

Query: 65   IGCDVWITN-EIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IG ++ +     +    +R++LLV+N  GYL + EL+++A+ +N+   +A I++ WL++ 
Sbjct: 117  IGAEIVLEGLGGDATAVTRIILLVQNKQGYLNISELIARAFTQNVVKNQAVIKMAWLKE- 175

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               +GLIALSGA  G +G A+  G    A + A + + +FP  FYIE+QR  + +    +
Sbjct: 176  -LNEGLIALSGAQAGPVGQALVQGDTARAHDVALQLAGVFPHRFYIELQRAGRADDEAHV 234

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
               + +A+ + LP+VATHPIQF ++ +F AHE R CIA+GEILSN KR+++FT+EQ FK+
Sbjct: 235  VAAVKLAARMKLPVVATHPIQFAEQDDFEAHEARICIADGEILSNPKRVRRFTREQYFKS 294

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP----KNININDFLISKSK 299
             ++M  LF DIPSAI NT+EIAKRC+L L  GKP+LP FPTP    + +   ++    S 
Sbjct: 295  AAQMEALFADIPSAIANTMEIAKRCSLTLVLGKPQLPAFPTPLVNGQRMTPEEYFRYASF 354

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GLK+R+++LY + +  + E  RY +RL+FE+ TI+KM F GYFLIV DFI WAKNN  P
Sbjct: 355  EGLKERMVHLYPNEQEREAEMPRYVERLEFELGTILKMGFPGYFLIVGDFINWAKNNGCP 414

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   R+ VI Y
Sbjct: 415  VGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQTNRNLVIDY 474

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS--- 476
            VKD+YGKDAVSQI TFGTMAA+G +RDVGRVLD+ Y+FCD ISKLIP KPG  +TL    
Sbjct: 475  VKDKYGKDAVSQIATFGTMAARGVVRDVGRVLDMSYTFCDGISKLIPNKPGTNVTLQLPP 534

Query: 477  ----------NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKL 526
                       A + EP LAER   EE+V+ L+E+A+++EG+ RN+GMHAGGVLIAP KL
Sbjct: 535  TDGKKSDKYVYATEAEPILAEREAKEEDVKTLLEMARKLEGMTRNIGMHAGGVLIAPGKL 594

Query: 527  INFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF 586
             +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI+K +     F
Sbjct: 595  TDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAAEFIRKRHPGQEKF 654

Query: 587  SLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD 646
            +   LPL+D   Y L  +  T AVFQ ES+GM+ ML++AKP   E++IAL +LYRPGPMD
Sbjct: 655  AYENLPLDDPKVYKLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNALYRPGPMD 714

Query: 647  LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
            LI +F  RKHG E   YP P   ++LSETYGIMVYQEQVMQ AQILGGYSLG ADLLRRA
Sbjct: 715  LIPSFVARKHGREQVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRA 774

Query: 706  IGKKKTSEMIEHRKFFQNGAIK-YGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            +GKKK  EM EHR  F+ GA K +G+ + KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+
Sbjct: 775  MGKKKKEEMDEHRGIFRAGAFKTHGIPEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYH 834

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            T ++K HY++ F  AN+++ MDDT+K+K+L +DA K  GLS  PPNIN   Y F PI   
Sbjct: 835  TGWIKVHYTAEFFCANMTVEMDDTDKLKVLFEDAEK-MGLSFEPPNINRGNYRFEPI--- 890

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTER-------KFGFFTNLFDFTKRIDKKYINRRI 877
               +K+IRYGLGAIKGTG+  I AIV  R       + G F +LFDF +R+D+  +N+R 
Sbjct: 891  --SNKEIRYGLGAIKGTGEQAILAIVAAREGRGPTEEAGPFKSLFDFARRVDRTRLNKRC 948

Query: 878  INSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLN 934
            + +LI +GAFD  +  R  LVAS+D A + A  +    NQ+ LF    +DD+ +  +  +
Sbjct: 949  VEALIKAGAFDTLHLNRAELVASMDRAFEFAAASAANANQVGLFDMGGDDDHGSSTQEPD 1008

Query: 935  YVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGII 993
             V+V  W  K+ L +EK  +GF LS H+F    TE+R+F    + EL+ +     ++GI+
Sbjct: 1009 LVEVMPWGVKERLTQEKTAVGFYLSGHLFDEVATEVRKFAKRPIEELQDSREPQLLAGIV 1068

Query: 994  TELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
            TEL++    RGK+ +  +DD S  +E   +  L    K++LK++EL+IV GK + DRF  
Sbjct: 1069 TELRVINGQRGKLALFKLDDKSAMIEARASEALLNTYKDLLKDDELIIVEGKAMPDRFSG 1128

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMF-----NRTFNISIL 1089
             +++  ++I+ +  AR  +GK   V       NRT +++ L
Sbjct: 1129 GMQLTVQQIWSLEQARCRFGKYLRVPVQLDSKNRTPDVAAL 1169


>gi|171057667|ref|YP_001790016.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775112|gb|ACB33251.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 1188

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/1130 (50%), Positives = 771/1130 (68%), Gaps = 40/1130 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR H+EYS++DG LRI+++++ AA D QPALAITDL+NLFG IKFYK A  +G+KPI
Sbjct: 3    FVHLRTHTEYSVVDGTLRIDEIVKTAAKDGQPALAITDLANLFGAIKFYKEANKRGVKPI 62

Query: 65   IGCDVWITNEI-----ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW 119
            IG D+W+  E      E +  +RLLLLV+N  GYL LCE+LS+A+++N+   +A ++ EW
Sbjct: 63   IGADIWLEPEGIGAAGEVRPATRLLLLVQNEPGYLNLCEILSRAWVQNVQRNQAWVKWEW 122

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L  ++   GLIALSG  +G +G ++  G    A   AR+ + IFP  FY+E+QR   P  
Sbjct: 123  L--DELNGGLIALSGGLMGCVGQSLAQGDTVRAAELARKLAAIFPRRFYLEVQRAGLPGH 180

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
            +  +   + +A+ + LP+VATHPIQ+L   +F AHE R C+AEGE ++N KR ++F ++Q
Sbjct: 181  DALVLATVPLAAQLQLPVVATHPIQYLAPDDFDAHEARVCVAEGETIANPKRPRRFGRDQ 240

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP-----KNININDFL 294
            +FKTQ+EM  LF D+P+A+ NT+EIA+RC+L+L  GKP+LP FPTP      ++ + D+ 
Sbjct: 241  HFKTQAEMEALFADVPTALANTLEIARRCSLRLVLGKPQLPNFPTPTLADGSSMPMEDYF 300

Query: 295  ISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
               S  GL++RL  LY  PE    E+ RY +RL+FE+ TI+KM F GYFLIVSDFI+WAK
Sbjct: 301  RQLSYEGLEERLALLYPKPEKRDAERARYLERLEFELTTILKMGFPGYFLIVSDFIRWAK 360

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
             N  PVGPGRGSGA SLVAY LSITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RD
Sbjct: 361  ANGCPVGPGRGSGAGSLVAYVLSITDLDPLHYNLLFERFLNPERVSMPDFDIDFCQGNRD 420

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            RVI YVKDRYG+ AVSQI TFGTMAAK A+RD+GRVL + Y   DSI+KLIP  PGK +T
Sbjct: 421  RVIDYVKDRYGRPAVSQIATFGTMAAKAALRDIGRVLGMGYGHVDSIAKLIPAPPGKSVT 480

Query: 475  LSN--------------AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVL 520
            L+               A  E P+L ER KNEEEV +L+ LA +VEG++RN+GMHAGGVL
Sbjct: 481  LARVPEKAEDRDGGVIYARLEAPELEEREKNEEEVAELLSLAMRVEGMVRNIGMHAGGVL 540

Query: 521  IAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKIN 580
            IAP K+ +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI   +
Sbjct: 541  IAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKEFIVARH 600

Query: 581  TKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLY 640
                +F+   +PL+D   Y L     T AVFQ ES GM+ MLK+AKP   E++IAL +LY
Sbjct: 601  ENRKDFAFETIPLDDAAVYKLFSDGLTEAVFQFESGGMQRMLKDAKPSRLEDLIALNALY 660

Query: 641  RPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQA 699
            RPGPMDLI +F  RKHG E   YP P  + VLSETYGIMVYQEQVMQ AQ+LGGYSLG A
Sbjct: 661  RPGPMDLIPSFVARKHGKEPVEYPHPMVEWVLSETYGIMVYQEQVMQTAQVLGGYSLGGA 720

Query: 700  DLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYA 759
            D+LRRA+GKKK  EM EHR  F+ GA    +S+ KA+EIF+ +EKFAGYGFNKSHA AY+
Sbjct: 721  DMLRRAMGKKKAEEMAEHRAIFRKGAAGNNISQDKADEIFDLMEKFAGYGFNKSHAAAYS 780

Query: 760  LLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFF 819
            LL+Y+TA++K H+++ F AAN+++ +DDT+K+++L +DA+K  G+    P++N+  Y F 
Sbjct: 781  LLAYHTAWIKVHHTAEFFAANMTIELDDTDKLRVLRQDALK-FGVQFESPDVNVGVYRFE 839

Query: 820  PIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRII 878
            P     G +K IRYGLGAIKGTG+  IEAI+  R + G F ++FDF  R+D+K IN+R+I
Sbjct: 840  PAPGKAG-NKLIRYGLGAIKGTGQGAIEAIIAARNEGGPFRSIFDFCARVDRKSINKRVI 898

Query: 879  NSLINSGAFDCFNEK----RYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKE 931
             +L+ +GAFD  + K    R  L+AS+ +AL+ A       +Q  LF     DD+ +   
Sbjct: 899  EALVKAGAFDKLHPKGLDGRAELLASVGLALEYAGTQAAHADQSGLFDFGGGDDHGSSTR 958

Query: 932  YLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVS 990
              +YV   +W  KQ L  EK  +G+ LS H+F     E+RQF    + +L  +    T++
Sbjct: 959  EPDYVAAETWDVKQRLSHEKIAIGYFLSGHLFDQVAAEVRQFAKRRIEDLSDSRDPQTLA 1018

Query: 991  GIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050
            GI+T+L++   +RGK+ I  +DD + ++E ++  +L   N  +LK++ELLI+ GK   DR
Sbjct: 1019 GIVTDLRIVNGHRGKVAIFKLDDKTAAIEAVVAEELLNANAALLKDDELLILQGKAQPDR 1078

Query: 1051 FLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN 1100
            F   +R N  +I D+  AR  +G+   V    T N+  + ++L  F  ++
Sbjct: 1079 FSGGVRFNVIQILDLPTARCRHGRYLRV--PATDNLPPVDQVLRDFPARS 1126


>gi|418532037|ref|ZP_13097946.1| DNA polymerase III, alpha subunit [Comamonas testosteroni ATCC 11996]
 gi|371450832|gb|EHN63875.1| DNA polymerase III, alpha subunit [Comamonas testosteroni ATCC 11996]
          Length = 1177

 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1102 (50%), Positives = 754/1102 (68%), Gaps = 37/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  R+N +I+AAA D Q A+AITD +NLFG IKFY+    KG+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++ +   + +  PSR+++LV++  GY  + ELL++ +  N+   +A+ + EWL++  
Sbjct: 62   LGAEI-VLEGLGDAPPSRIIVLVQSRQGYHNIAELLARGWTRNVVRDQAQHKWEWLQE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI LSGA  G +GIA+  G    A   A+R + +FP  FYIE+QR  + +    + 
Sbjct: 119  LGEGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAGRSDDESHVL 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +AS +NLP+VATHPIQ+ K  ++ AHE R CIAEGEIL N KR++KFT++Q FKT 
Sbjct: 179  AAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKFTRDQYFKTA 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM +LF DIPSAI+NT+EIA+RC+L LE G P+LP FP P  + +++F   +S  GL++
Sbjct: 239  AEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPDGMTMDEFFRHESYQGLEE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL++LY D      ++ RY +RL+FE+ TI+KM F GYFLIVSDFI+WAK N  PVGPGR
Sbjct: 299  RLVHLYPDAAKRDAQRARYVERLEFELGTIMKMGFPGYFLIVSDFIKWAKANGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY L +TD+DPL YNLLFERFLNP R+SMPDFD+DFC + RDRVI YVKDRY
Sbjct: 359  GSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQNRDRVIDYVKDRY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL--------- 475
            G+DAVSQI TFGTMAA+ AIRDVGRVLD+ Y+FCD ISKLIP KPG  +TL         
Sbjct: 419  GRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGLHVTLKYPPNPPKE 478

Query: 476  ----SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                + AIKEEP LAERI+ EE+V+ LIE+A+ +EG+ RN+GMHAGGV+IAP +L +FCP
Sbjct: 479  GDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGGVVIAPGRLADFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G T  ++ YDKDD+E +GL+KFDFLGL TL+IL+    FI K +    NF    +
Sbjct: 539  LYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHKGQENFQFENI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEAKP   E++IAL +LYRPGPMDLI  F
Sbjct: 599  PLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNALYRPGPMDLIPTF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG ADLLRRA+GKKK
Sbjct: 659  IARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM++HR  F+ GA K GLS+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  VEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F   N+++ MD+T+K+K+L +DA+K  G++   P++N   + F P+ +     K 
Sbjct: 779  HYTAEFYCGNMTVEMDNTDKLKVLYEDALK-MGITFEMPDVNRGVHRFEPVTD-----KV 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTER----------KFGFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGAIKGTG++ IEAIV  R          + G F +LFDF  R+D+  IN+R + +
Sbjct: 833  IRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRINKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLN---YVK 937
            LI  GAFD  +  R  L+A++D A   A  +    +Q  LF    ++ L           
Sbjct: 893  LIKGGAFDTIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSSTAEPPMAD 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITEL 996
            V  W  K++L  EK  +GF L+ H+F   E E+R+F+   + E++ +    T++GII  L
Sbjct: 953  VLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQTMAGIIGGL 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +     RGK+ I  +DD S  +E  ++ +       +LKE+E ++VSG++  DRF   +R
Sbjct: 1013 RTINGQRGKLSIFTLDDKSAVIEASVDEKTMAACAEVLKEDEFVVVSGRLQPDRFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            +  ++++ +  AR  + +   V
Sbjct: 1073 MKVQQMWSLADARCRFARYLQV 1094


>gi|120611898|ref|YP_971576.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120590362|gb|ABM33802.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 1190

 Score = 1137 bits (2940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1104 (49%), Positives = 747/1104 (67%), Gaps = 36/1104 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLRLH+E+S++DG  RI++V +AA+ D QPALAITDL NLFG IKFYK A  KG+K
Sbjct: 9    PMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G +V I  E     P R+LLL +   GYL LCE+L++A+  N+         EWL++
Sbjct: 69   PVLGAEVSIEPETAGGPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNVPLCTWEWLQE 128

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                  LIALSGA  G +G A   G    A   A R + IFP  FY+E+QR  +P    Q
Sbjct: 129  --LGGDLIALSGAQAGPVGQAFTRGDEAGAARVALRLAGIFPHRFYLELQRAGRPEDESQ 186

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+ +NLP+VAT P QFL   ++ AHE R CIAEGEIL+N +R+++FT+EQ FK
Sbjct: 187  VVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVRRFTREQYFK 246

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            + ++M  LF D+P+AI NT+EIAKRC+L L  GKP+LP FPTP  + I ++    S  GL
Sbjct: 247  SSAQMEALFADVPTAIANTLEIAKRCSLTLVLGKPRLPDFPTPNGMPIEEYFRYASFEGL 306

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL +L+ +    + ++ RY +RL+FE+ TI+KM F GYFLIV DFIQWAK N  PVGP
Sbjct: 307  EERLKHLFPNEAEREKQRPRYVERLEFELGTILKMGFPGYFLIVGDFIQWAKQNGCPVGP 366

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVKD
Sbjct: 367  GRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKD 426

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS------ 476
            +YGK+AVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD ISKL+P KPG   TL+      
Sbjct: 427  KYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLAYPPEVK 486

Query: 477  -------NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
                    A++ EP L ER++ EE+V+ +IE+A+++EG+ RN+GMHAGGVLIAP KL +F
Sbjct: 487  KEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDF 546

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN 589
            CPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI K +    NF+  
Sbjct: 547  CPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQENFAFE 606

Query: 590  KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIK 649
             +PL+D  TY L  +  T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI 
Sbjct: 607  NIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIP 666

Query: 650  NFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
             F  RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GK
Sbjct: 667  TFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGK 726

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM EHR+ F+ GA + G+ + KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +L
Sbjct: 727  KKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWL 786

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY++ F  AN+++ MDDT+K+K+L +DA+K  GL+  PP++N   Y F P+ +     
Sbjct: 787  KVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKM-GLTFEPPDVNRGMYRFEPVTD----- 840

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRII 878
            K IRYGLGA+KGTG+  IEAI+  R+           G F +LFDF  R+D+  +N+R +
Sbjct: 841  KVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRTRLNKRTL 900

Query: 879  NSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNY 935
             +LI +GAFD     R  LVASID A   A       NQ  LF    +D + +  +    
Sbjct: 901  EALIKAGAFDAIEMNRASLVASIDRAFDFANSLIANANQGGLFDMMGDDAHGSSTQDPAL 960

Query: 936  VKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIIT 994
            V++  W  K+ L +EK  +GF LS H+F   E E+R+F+   + EL  +    + +GI++
Sbjct: 961  VEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPIEELADSREPQIMAGIVS 1020

Query: 995  ELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
            + ++    RG++ +  +DD S  +E   +  +   ++++LKE+E +++ G++  D F   
Sbjct: 1021 DFRVINGQRGRLALFKLDDKSAMIEASADENVINAHRDLLKEDEFVVLLGRLQLDHFSGG 1080

Query: 1055 IRINAEKIFDINVARILYGKKFSV 1078
            +R+   + +D+  AR  +G+   V
Sbjct: 1081 LRVKVMQAWDLASARAKFGRYLQV 1104


>gi|326316817|ref|YP_004234489.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323373653|gb|ADX45922.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1181

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1102 (49%), Positives = 748/1102 (67%), Gaps = 36/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V +AA+ D QPALAITDL NLFG IKFYK A  KG+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVKPV 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G +V I  E     P R+LLL +   GYL LCE+L++A+  N+         EWLE+  
Sbjct: 62   LGAEVSIEPETAGNPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNVPLCTWEWLEE-- 119

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
                LIALSGA  G +G A   G +  A   A R + +FP  FY+E+QR  +P    Q+ 
Sbjct: 120  LGGDLIALSGAQAGPVGQAFTRGDDAGAARVALRLAGLFPHRFYLELQRAGRPEDESQVV 179

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ +NLP+VAT P QFL   ++ AHE R CIAEGEIL+N +R+++FT+EQ FK+ 
Sbjct: 180  AAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVRRFTREQYFKSS 239

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            ++M  LF D+P+AI NT+EIA+RC+L L  GKP+LP FPTP  + I+++    S  GL++
Sbjct: 240  AQMEALFADVPTAIANTLEIARRCSLTLVLGKPRLPDFPTPNGMPIDEYFRYASFEGLEE 299

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL +L+++      ++ RY +RL+FE+ TI+KM F GYFLIV DFIQWAK N  PVGPGR
Sbjct: 300  RLKHLFRNEAERDKQRPRYVERLEFELNTILKMGFPGYFLIVGDFIQWAKENGCPVGPGR 359

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVKD+Y
Sbjct: 360  GSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKDKY 419

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GK+AVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD ISKL+P KPG   TL+        
Sbjct: 420  GKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLAYPPEVKKE 479

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP L ER++ EE+V+ +IE+A+++EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 480  GDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCP 539

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI K +    NF+   +
Sbjct: 540  LYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQENFAFENI 599

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L  +  T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI  F
Sbjct: 600  PLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTF 659

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 660  VNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKK 719

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR+ F+ GA + G+ + KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 720  AEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 779

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA+K  GL+  PP++N   Y F P+ +     K 
Sbjct: 780  HYTAEFFCANMTVEMDDTDKLKVLYEDAMKM-GLTFEPPDVNRGMYRFEPVTD-----KV 833

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEAI+  R+           G F +LFDF  R+D+  +N+R + +
Sbjct: 834  IRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRTRLNKRTLEA 893

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD     R  LVASID A   A       NQ  LF    +D + +  +    V+
Sbjct: 894  LIKAGAFDAIEMNRASLVASIDRAFDFANSLIANANQGGLFDMMGDDSHGSSTQDPALVE 953

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITEL 996
            +  W  K+ L +EK  +GF LS H+F   E E+R+FI   + EL  +    + +GI+++ 
Sbjct: 954  MLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFIRTPIEELADSREPQIMAGIVSDF 1013

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++    RG++ +  +DD S  +E   +  +   ++++LKE+E +++ G++  D F   +R
Sbjct: 1014 RVINGQRGRLALFKLDDKSAMIEASADENVINAHRDLLKEDEFVVLLGRLQLDHFSGGLR 1073

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            +   + +D+  AR  +G+   V
Sbjct: 1074 VKVMQGWDLASARAKFGRYLQV 1095


>gi|351732151|ref|ZP_08949842.1| DNA polymerase III, alpha subunit [Acidovorax radicis N35]
          Length = 1177

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1103 (51%), Positives = 750/1103 (67%), Gaps = 37/1103 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V +AAA D QPALAITDL+NLFG IKFYK A  KG+KPI
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVAKAAAKDGQPALAITDLNNLFGAIKFYKEARGKGVKPI 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++++  E     PSRL++LV+N  GYL L ELL++A+  N+    A     WLE+  
Sbjct: 62   LGAEIFLEGEA-GVAPSRLIVLVQNRQGYLNLSELLARAWTRNVVKNLALCTWAWLEE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIAL+GA  G +G A+  G    A   A R + +FP  FYIE+QR  + +    + 
Sbjct: 119  LSEGLIALAGAQAGPVGQALLKGDESGAAQVALRLAGLFPHRFYIELQRAGRVDDESHVV 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
                +A+ ++LP+VATHP+QF    ++ AHE R CIAEGEIL+N +R++KFT++Q FK+ 
Sbjct: 179  AAAQLAARLSLPVVATHPVQFATADDYEAHEARICIAEGEILANPRRVRKFTRDQYFKST 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSAI NT+EIA+RCNL L  GKP+LP FPTP  + I+++    S  GL++
Sbjct: 239  AEMEALFADVPSAIANTVEIAQRCNLTLVLGKPQLPDFPTPNGMPIDEYFRVASFDGLEE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  L+        ++ RY +RL+FEI TI+KM F GYFLIV DFIQWAKNN  PVGPGR
Sbjct: 299  RLKLLFPKEAERDQQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIQWAKNNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVKD+Y
Sbjct: 359  GSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKDKY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GK+AVSQI TFGTMAAK AIRDVGRV+D+ Y FCD ISKL+P KPG   TL+        
Sbjct: 419  GKNAVSQIATFGTMAAKAAIRDVGRVMDMSYMFCDGISKLVPGKPGMSYTLAYPPEVKKD 478

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP L ER++ EE+V+ +IE+A+++EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 479  GDKNNYALELEPMLYERVQKEEDVKTIIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI K +    NF+   +
Sbjct: 539  LYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIIKRHKGQENFAFETI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L     T AVFQ ES+GM+ MLKEAKP   E++IAL +LYRPGPMDLI +F
Sbjct: 599  PLDDGPTYRLFSDGKTEAVFQFESRGMQGMLKEAKPSRLEDLIALNALYRPGPMDLIPSF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 659  VNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR+ F+ GA +  +S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  AEEMAEHREIFRKGAAEKNISQEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            H+++ F  AN+++ MDDT+K+K+L +DA K  GLS  PP++N   Y F P+ +     K 
Sbjct: 779  HFTAEFFCANMTVEMDDTDKLKVLFEDAQK-MGLSFEPPDVNRGFYRFEPVTD-----KI 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTERK----------FGFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEA+V  R+           G F +LF+F  R+DK  +N+R + +
Sbjct: 833  IRYGLGAVKGTGQQAIEAMVAAREGRGEGPHGTTTGPFKSLFEFCLRVDKARMNKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD  N  R  +VASID A   A  T   +NQ  LF    +D + +  +    V 
Sbjct: 893  LIKAGAFDSINMNRAAMVASIDRAFDFAAATLANVNQGGLFDMMGDDAHGSSTQEPELVD 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITEL 996
               W  K+ L  EK  +GF LS H+F    TE+R+F+   + EL  +    V +GII++ 
Sbjct: 953  AVPWGIKERLTLEKTAVGFYLSGHLFDEVATEVRRFVRTQIDELLDSREPQVLAGIISDF 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++    RGK+ +  +DD S  +E   +  L    +N LKE+E +++ G++  D F   +R
Sbjct: 1013 RVINGQRGKLGLFKLDDKSAVIEASADEALLNTYRNQLKEDEFVVMMGRLQLDHFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSVM 1079
            +  ++++D+  AR  +GK   VM
Sbjct: 1073 VKVQQVWDLAGARCRFGKYLHVM 1095


>gi|149926718|ref|ZP_01914978.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105]
 gi|149824647|gb|EDM83863.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105]
          Length = 1176

 Score = 1134 bits (2932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/1152 (48%), Positives = 778/1152 (67%), Gaps = 29/1152 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+H+E+S++DG++R+ + ++AAA    PALAI+DLSNLFG+IKFY  A   G+KPI
Sbjct: 12   FVHLRMHTEFSVLDGMVRVGEAVKAAAGCGMPALAISDLSNLFGLIKFYGKARGAGVKPI 71

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
              CDVWI ++ + ++P+R+LLLV+N+ GYLQLCELLS+A++ N   G+A ++ EW ++  
Sbjct: 72   AACDVWIESDRDEEQPARMLLLVQNHKGYLQLCELLSRAFLRNQKRGKATLKFEWFDEVG 131

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              DGLIA+SG    DIG  +  G    AE+ AR++ K F   +YIE+QR         + 
Sbjct: 132  C-DGLIAISGFASSDIGQFLLGGNMARAEDSARKFLKHFEGRYYIELQRDGSTQAENLVN 190

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
                +A+ + LP+VATHPIQFLK  +F AHE R CIA+GEILSN +R ++FT++Q FKT 
Sbjct: 191  LSCQLAAKLQLPVVATHPIQFLKPEDFRAHEARVCIAQGEILSNPRRPRRFTEQQYFKTA 250

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF DIPSAI+N+I IA+RCNL LE GKPKLP FPTP  + ++D+L+  SK GL+K
Sbjct: 251  QEMAELFADIPSAIRNSIRIAQRCNLTLELGKPKLPAFPTPDGMTLDDYLVHLSKEGLEK 310

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL +L+  P I + EK+R  Y+ RL+ E +TII M F GYFLIV DFI W K N +PVGP
Sbjct: 311  RLAHLF--PSIEEREKMRPEYEARLKIECDTIIGMGFPGYFLIVQDFINWGKKNGVPVGP 368

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RDRVI YVK 
Sbjct: 369  GRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSMPDFDIDFCQDNRDRVIDYVKQ 428

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI TFGT+ AK  IRD GRVLD+ Y +CD +SKLIP  P     L  A+ +E
Sbjct: 429  NYGRDAVSQIATFGTLGAKAVIRDAGRVLDMPYMYCDGLSKLIPQTPADPWDLDRAMADE 488

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT-GI 541
            P   ER++NE+E +++I +A+ +EG+ RNVGMHAGGVLIAP KL +FCPLY  +G T  +
Sbjct: 489  PTFRERVENEDEAKEIIAVARPLEGLTRNVGMHAGGVLIAPGKLTDFCPLYCADGSTDSV 548

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQYDKDD+E +GL+KFDFLGL  L+ILD  + ++++      +F L  LPL+D   Y L
Sbjct: 549  VSQYDKDDVEAVGLVKFDFLGLRNLTILDWAVRWVRENYEDQRDFRLEDLPLDDPAVYQL 608

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRK---- 655
                NT AVFQ ES+  K++ K+ KPD FE+IIAL++L RPGP+   ++ +F  RK    
Sbjct: 609  FSDGNTTAVFQSESRSAKDLEKKLKPDNFEDIIALMALNRPGPLGSGMVDDFIARKKETS 668

Query: 656  ---HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                G    Y  P+ + +L  TYG++VYQEQVM +AQIL GYSLG ADLLRRA+GKKK  
Sbjct: 669  KTGKGRAEWYFHPKLEGILKSTYGVIVYQEQVMLVAQILAGYSLGGADLLRRAMGKKKPE 728

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R+ F  GA + G+    A ++F+ +EKFA YGFNKSH+ AYAL++Y+TA+LK HY
Sbjct: 729  EMAKQREIFTTGATERGVDPAVAKQLFDLMEKFAEYGFNKSHSAAYALIAYHTAWLKAHY 788

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTC---------GLSILPPNINLSKYYFFPI-I 822
             + FMAA++S  MDDT+K+KI V+DA+  C          +++L P++N S + F  + I
Sbjct: 789  PAEFMAASMSSDMDDTDKVKIFVEDAMAMCQVPGKKAGTTVTMLGPDVNESNFRFTAVRI 848

Query: 823  ESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSL 881
            + + +   IRYGLGA+KGTG++  EAIV ER   G FT+LFDF KR+D K INRR+I +L
Sbjct: 849  DGEKRASAIRYGLGAVKGTGQAACEAIVAERNANGPFTSLFDFVKRVDSKQINRRVIEAL 908

Query: 882  INSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSW 941
            I +GAFD  N  R  L+AS   A++ A +     +Q+SLF  D   +    L  V+VP+W
Sbjct: 909  IRAGAFDALNPDRAKLLASSGQAMEWAAQQAATASQVSLFGEDLGGDAPPEL--VEVPTW 966

Query: 942  SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKT 1000
            S++++L +EK  LG+  S H+F   E  +RQF+ + L +L P      ++G+I  L+   
Sbjct: 967  SEREKLQQEKAALGYYFSGHLFKADEANVRQFVKLRLKDLSPGRDMVWMAGVIASLRTMM 1026

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
            T RGK+ I+++DD++  VE+ I N+ +E N+N+LKE+ LL++ GKV ED +   +RI+AE
Sbjct: 1027 TKRGKMAIVLLDDSTAQVELSIFNEQFEANRNLLKEDSLLVLQGKVSEDSYTGGLRISAE 1086

Query: 1061 KIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ +  AR  +  +  +  N   +   L+ +L  F+       V     N       + 
Sbjct: 1087 NLYSLASARAHFVSRLRLSMNGQSDAEKLRAMLEPFRDPEQGCLVEIDYHNGHAACVAQL 1146

Query: 1121 PLNYKVQPIDDL 1132
               +KV+P +DL
Sbjct: 1147 SSEWKVRPEEDL 1158


>gi|347820613|ref|ZP_08874047.1| DNA polymerase III, alpha subunit [Verminephrobacter aporrectodeae
            subsp. tuberculatae At4]
          Length = 1186

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/1102 (50%), Positives = 750/1102 (68%), Gaps = 37/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V EAAA D QPALAITDLSNLFG IKFY  A  KG+KPI
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVAEAAARDGQPALAITDLSNLFGAIKFYSQARAKGVKPI 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++++  E +   P+R ++LV+N+ GYL L ELL++A+  N    +A     WLE+  
Sbjct: 62   LGAEIFLQGE-DGAGPTRFIVLVQNHQGYLNLSELLARAWTGNTVKNQALCTWAWLEE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
               GLIAL+GA  G +G A+  G    A + A R + IF   FYIE+QR  + +    + 
Sbjct: 119  LSGGLIALAGAQAGPVGQALLKGDASGAADLALRLAGIFVHRFYIELQRAGRADDEGHVA 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
                +A+ +NLP+VATHP+QF    ++ AHE R CIA+ EIL+N +R++KFT++Q FK+ 
Sbjct: 179  AAAQLAARLNLPVVATHPVQFPAADDYEAHEARVCIAQSEILANPQRVRKFTRDQYFKSA 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF D+PSAI NT+EIA+RCNL L  GKP+LP FPTP  + I  +    S  GL++
Sbjct: 239  AEMQALFADVPSAIGNTLEIARRCNLTLALGKPQLPDFPTPDGMPIEAYFRVASFDGLEQ 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  LY D      ++ RY +RL+FEI TII+M F GYFLIV DFI+WAKNN  PVGPGR
Sbjct: 299  RLQRLYPDTAQRDRQRPRYVERLEFEIGTIIEMGFPGYFLIVGDFIRWAKNNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   RDRVI YVK++Y
Sbjct: 359  GSGAGSLVAYALGITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKEKY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GK+AVSQI TFGTMAAK AIRDVGRVL   Y  CD I+KL+P KPG   TL         
Sbjct: 419  GKNAVSQIATFGTMAAKAAIRDVGRVLGFGYGLCDGIAKLVPGKPGVSYTLQYPPDPKKE 478

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP LAER++ EE+VR +IE+A+++EG+ RNVGMHAGGVLIAP KL +FCP
Sbjct: 479  GDKNHYALELEPLLAERVRKEEDVRTVIEMAQKLEGLTRNVGMHAGGVLIAPGKLTDFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI+  +    +FS   +
Sbjct: 539  LYQQPGSASAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRARHKGQEHFSYEAI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
             L+D  TY L  +  T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI +F
Sbjct: 599  ALDDGPTYRLFSEGRTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPSF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYG+MVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 659  VNRKHGKEEVLYPHPLMEPVLAETYGVMVYQEQVMQTAQVLGGYSLGSADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR  F+ GA + G+ + +A+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  AEEMAEHRAIFRKGAAEKGIPREQADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA K  GL+  PP++N   + F P+ +     K 
Sbjct: 779  HYTAEFFCANMTVEMDDTDKLKLLFEDAQKM-GLAFEPPDVNRGVHRFEPVTD-----KI 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTERK----------FGFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEAIV  R+           G F +LFDF  R+D+  +N+R + +
Sbjct: 833  IRYGLGAVKGTGQQAIEAIVAAREGRGEGPQGPSAGPFKSLFDFCVRVDRGRLNKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD  N +R  LVASID A   A  T   +NQ  LF    +D + +  +  + V+
Sbjct: 893  LIKAGAFDSINRQRAALVASIDRAFDFAAATLANMNQGGLFDAMGDDAHGSSTQEPDLVE 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITEL 996
               W  ++ L +EK  +GF LS H+F    TE+R+F+   +  L+ +     ++GIITEL
Sbjct: 953  AVPWGIRETLAQEKTAIGFYLSGHLFDEVATEVRRFVHTPIGALQDSREPLLLAGIITEL 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++ +  RGK+ +  +DD S S+E   +  L E  +N LKE+E ++++G++  D F   +R
Sbjct: 1013 RVISGLRGKLGLFRLDDKSGSIEASADEPLLEACRNQLKEDEFVVLAGRLQPDYFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            +  ++I+D+  AR  +GK   V
Sbjct: 1073 MKVQQIWDLAGARCRFGKYLQV 1094


>gi|332525263|ref|ZP_08401436.1| DNA polymerase III, alpha subunit [Rubrivivax benzoatilyticus JA2]
 gi|332108545|gb|EGJ09769.1| DNA polymerase III, alpha subunit [Rubrivivax benzoatilyticus JA2]
          Length = 1169

 Score = 1130 bits (2924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1099 (51%), Positives = 756/1099 (68%), Gaps = 30/1099 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR H+EYS++DG LRI+D   AA  D QPALAITDLSNLFG IKFYK+    G+KPI
Sbjct: 3    FVHLRTHTEYSVVDGTLRIDDAAGAAKADGQPALAITDLSNLFGAIKFYKACRGAGVKPI 62

Query: 65   IGCDVWITN--EIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            +G DVW+    +   ++P+RL LLV++  GYL LCELL++A+ +N+   +A ++ EWL  
Sbjct: 63   VGVDVWMDPLPDAAERQPTRLALLVQDRGGYLNLCELLARAWTKNVQRNQAWVKWEWL-- 120

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            ++   GLIALSGA +G +G A+  G    A   AR  + IFP  FY+E+QR   P     
Sbjct: 121  HELSGGLIALSGADMGAVGQALLAGDEQRAAAAARELASIFPGRFYLELQRAGLPTHEAH 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            ++  + +A+ + LP+VATHPIQFL+  +F AHE R CIAEGE L+N KRIK+FT+EQ+FK
Sbjct: 181  VRAAVPLAARLGLPVVATHPIQFLEPDDFEAHEARVCIAEGETLANPKRIKRFTREQHFK 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T ++M  LF D+PSAI NT+EIA+RC+L L  GKP+LP FPTP    I+ +    S  GL
Sbjct: 241  TAAQMESLFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPDGSPIDVYFRKASHEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL+ L+   E  +  +  Y +RL+FE++TI+KM F GYFLIVSDFI WAK N  PVGP
Sbjct: 301  EKRLVALFPKEEEREKRRPEYVERLEFELDTILKMGFPGYFLIVSDFIVWAKANGCPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   RDRVI+YVK+
Sbjct: 361  GRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQGNRDRVIRYVKE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN----- 477
            +YG+DAV QI TFGTMAAK A+RDVGRVL + Y   DSI+KLIP  PGK +TL+      
Sbjct: 421  KYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPGKTVTLAKVPEKP 480

Query: 478  ------AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A +EEP++  R   EEEV +L+ LA +VEG++RN+GMHAGGVLIAP K+ +FCP
Sbjct: 481  DPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRNIGMHAGGVLIAPGKITDFCP 540

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI        +FS   L
Sbjct: 541  LYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELARQFIVARRPNMKDFSYETL 600

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D+  Y L     T AVFQ ES+GM+ ML+EAKP   E++IAL +LYRPGPMDLI  F
Sbjct: 601  PLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLEDLIALNALYRPGPMDLIPTF 660

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL ETYG+MVYQEQVMQ AQ+LGGYSLG ADLLRRA+GKKK
Sbjct: 661  VARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK 720

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM +HR  F+ GA K  + + KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+TA++K 
Sbjct: 721  PEEMAQHRVIFREGAAKKDIPEAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTAWIKV 780

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            H ++ F AAN+++  D+T+K+K+L+ DA K  G+   PP++N     F PI     + K+
Sbjct: 781  HCTAEFFAANMTIEADNTDKLKVLLADA-KLFGIRFDPPDVNTGTLRFEPI-----EDKR 834

Query: 831  IRYGLGAIKGTGKSTIEAIVTERK------FGFFTNLFDFTKRIDKKYINRRIINSLINS 884
            IRYGLGA+KGTG   IEAIV  R+       G F +LFDF  R+D++ +N+R++ +LI +
Sbjct: 835  IRYGLGAVKGTGAGAIEAIVAAREGRAGDGGGPFRSLFDFCARVDRQRVNKRVVEALIKA 894

Query: 885  GAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK-NDDNNNLKEYLNYVKVPSWSK 943
            GAFD  +  R   +AS+ +A + A+      +Q  LF   D + +  +    V V  WS 
Sbjct: 895  GAFDSLHADRAATLASVGLAFEWADTQAANKDQGGLFDFGDAHGSSTQEPALVAVEPWSV 954

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTY 1002
            ++ L++EK  +GF LS H+F     E+R+F+   + EL  +    +V+GI++EL++    
Sbjct: 955  RERLMQEKIAIGFYLSGHLFDACRDEVRKFVRRDIVELVDSREPQSVAGIVSELRVINGQ 1014

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            RG++ I  +DD S ++E + N +L + ++ +L+E+EL+IV GK+  DRF   +R+NA+++
Sbjct: 1015 RGRVAIFKLDDGSEAIEAVANEELLDASRELLREDELVIVVGKLQPDRFSGGLRLNAQQV 1074

Query: 1063 FDINVARILYGKKFSVMFN 1081
            +D+  AR  YG+  SV  N
Sbjct: 1075 WDLATARARYGRYLSVELN 1093


>gi|241763389|ref|ZP_04761444.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
 gi|241367431|gb|EER61742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
          Length = 1198

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1111 (49%), Positives = 756/1111 (68%), Gaps = 40/1111 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HLRLH+E+S++DG  RI+D+ +AAA D QPALAITDL+NLFG IKFYK A  KG
Sbjct: 14   MEPMFVHLRLHTEFSVVDGTNRIDDLAKAAAKDGQPALAITDLNNLFGAIKFYKEARGKG 73

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI+G ++++  E     PSR+L+LV+   GYL L ELL++A+  N+   +A    +WL
Sbjct: 74   VKPILGAEIFLEGEA-GAAPSRMLVLVQGRQGYLNLSELLARAWTRNVVKAQAICTWDWL 132

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIA++GA  G +G A+  G +  A   A R + IFP  FYIE+QR  + +  
Sbjct: 133  QE--LGEGLIAIAGAQAGPVGQALMKGDDAGAAALALRLAGIFPHRFYIEVQRAGRADDE 190

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+ ++LP+VATHP+QF    ++ AHE R CIAEGEIL N +R++KFT+EQ 
Sbjct: 191  AHVVAAVQLAARLHLPVVATHPVQFATADDYEAHEARVCIAEGEILGNQRRVRKFTREQY 250

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP----KNININDFLIS 296
            FK+ ++M  LF D+P+A+ N++EIA+RCN+ L  GKP+LP FP P    + ++++D+   
Sbjct: 251  FKSSAQMQALFADLPTALANSVEIARRCNITLVLGKPQLPNFPIPPVNGQVLSVDDYFRH 310

Query: 297  KSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
             S  GL++RL  L+ D      E+ RY +RL+FE+ TI+KM F GYFLIV DFIQWAK +
Sbjct: 311  VSFEGLEERLRLLFPDEARRNVERPRYVERLEFELGTILKMGFPGYFLIVGDFIQWAKTH 370

Query: 357  SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
              PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRV
Sbjct: 371  GCPVGPGRGSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQSNRDRV 430

Query: 417  IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL- 475
            I YVK++YGKDAVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD ISKL+P KPG   TL 
Sbjct: 431  IDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLQ 490

Query: 476  ------------SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAP 523
                        + A++ EP L ER++ EE+V+ +IE+A+++EG+ RN+GMHAGGVLIAP
Sbjct: 491  YPPEVKKDGDKNNYALELEPLLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAP 550

Query: 524  SKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT 583
             KL +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI K +   
Sbjct: 551  GKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQ 610

Query: 584  TNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPG 643
             NF+   +PL+D  TY L  +  T AVFQ ES+GM+ ML+EA+P   E++IAL +LYRPG
Sbjct: 611  ENFAYENIPLDDGPTYRLFSEGKTEAVFQFESRGMQGMLREARPSRLEDLIALNALYRPG 670

Query: 644  PMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLL 702
            PMDLI  F  RKHG E   YP P  + VLSETYGIMVYQEQVMQ AQ+LGGYSLG AD+L
Sbjct: 671  PMDLIPTFVNRKHGKEPVEYPHPLVEPVLSETYGIMVYQEQVMQTAQVLGGYSLGGADML 730

Query: 703  RRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLS 762
            RRA+GKKK  EM EHR  F+ GA + G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+
Sbjct: 731  RRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAAYSLLA 790

Query: 763  YYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPII 822
            Y+T +LK HY++ F  AN+++ MDDT+K+K+L +DA K  GL+  PP++N   Y F P+ 
Sbjct: 791  YHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAKKNFGLTFEPPDVNRGMYRFEPVT 850

Query: 823  ESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKY 872
            +     K IRYGLGA+KGTG+  IEAIV  R+           G F +LFDF  R+D+  
Sbjct: 851  D-----KVIRYGLGAVKGTGQQAIEAIVAAREGRGEGPQGSTKGPFKSLFDFCVRVDRAR 905

Query: 873  INRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNL 929
            +N+R + +LI +GAFD  N  R  +VASID A   A  T   +NQ  LF     D + + 
Sbjct: 906  LNKRTVEALIKAGAFDALNLNRAAMVASIDRAFDFAAATLANVNQGGLFDMMGEDAHGSS 965

Query: 930  KEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV 989
             +  + V    W  K+ L +EK  +GF LS H+F     E+R+F+   + EL  +    +
Sbjct: 966  TQEPDLVDAVPWGIKERLTQEKTAVGFYLSGHLFDEVAQEVRRFVRTQIDELLDSREPQI 1025

Query: 990  -SGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
             +GII++ ++    RGK+ +  +DD S  +E   +  L    +N LKE+E +++ G++  
Sbjct: 1026 LAGIISDFRVINGQRGKLGLFRLDDKSGVIEASADEALLNTYRNQLKEDEFVVMLGRLQL 1085

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVM 1079
            D F   +R+  ++++D+  AR  +GK   V+
Sbjct: 1086 DHFSGGLRVKVQQVWDMAGARARFGKYLHVV 1116


>gi|365091939|ref|ZP_09329190.1| DNA polymerase III, alpha subunit [Acidovorax sp. NO-1]
 gi|363415676|gb|EHL22802.1| DNA polymerase III, alpha subunit [Acidovorax sp. NO-1]
          Length = 1177

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/1103 (50%), Positives = 754/1103 (68%), Gaps = 37/1103 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V +AAA D QPALAITDL+NLFG IKFYK A +KG+KPI
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVAKAAAKDGQPALAITDLNNLFGAIKFYKEARSKGVKPI 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++++  E     PSRL++LV+N  GYL L EL+++A+  N+    A     WLE+  
Sbjct: 62   LGAEIFLEGEA-GAAPSRLIVLVQNRQGYLNLSELIARAWTRNVVKNLALCTWAWLEE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIAL+GA  G +G A+  G    A   A R + +FP  FYIE+QR  + +    + 
Sbjct: 119  LSEGLIALAGAQAGPVGQALLKGDEPGAAALALRLAGLFPHRFYIELQRAGRVDDESHVV 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
                +A+ ++LP+VATHP+QF    ++ AHE R CIAEGEIL+N +R++KFT++Q FK+ 
Sbjct: 179  AAAQLAARLSLPVVATHPVQFATADDYEAHEARVCIAEGEILANPRRVRKFTRDQYFKSS 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM  LF DIPSA+ NT+EIA+RCNL L  GKP+LP FPTP  + I++F    S  GL++
Sbjct: 239  AEMQALFADIPSAVANTVEIAQRCNLTLVLGKPQLPDFPTPNGMPIDEFFRFASFEGLEE 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  L+         + RY +RL+FEI TI+KM F GYFLIV DFIQWAKNN  PVGPGR
Sbjct: 299  RLKLLFPKESDRNQHRPRYVERLEFEIGTILKMGFPGYFLIVGDFIQWAKNNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI YVK++Y
Sbjct: 359  GSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKEKY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-------- 476
            GK+AVSQI TFGTMAAK AIRDVGRV+D+ Y FCD ISKL+P KPG   TL+        
Sbjct: 419  GKNAVSQIATFGTMAAKAAIRDVGRVMDMSYMFCDGISKLVPGKPGMSYTLAYPPEVKKD 478

Query: 477  -----NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A++ EP L ER++ EE+V+ +IE+A+++EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 479  GDKNNYALELEPLLYERVQKEEDVKTIIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQ+DKDD+E IGL+KFDFLGL TL+IL+    FI K +    NF+ + +
Sbjct: 539  LYQQPGSESAVSQFDKDDVEAIGLVKFDFLGLATLTILEIARQFIMKRHKGQENFAYDAV 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L  +  T AVFQ ES+GM+ MLKEA+P   E++IAL +LYRPGPMDLI +F
Sbjct: 599  PLDDGPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPSF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 659  VNRKHGKEVVEYPHPLVEKVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR  F+ GA + G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  AEEMAEHRAIFRKGAAEKGISQEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA K  GLS  PP++N   Y F P+ +     + 
Sbjct: 779  HYTAEFFCANMTVEMDDTDKLKVLFEDAQKM-GLSFEPPDVNRGFYRFEPVTD-----RI 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGA+KGTG+  IEAIV  R+           G F +LFDF  R+DK  +N+R + +
Sbjct: 833  IRYGLGAVKGTGQQAIEAIVAAREGRGDGPHGSTKGPFKSLFDFCLRVDKARMNKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD  +  R  LVASID A   +  T   +NQ  LF    +D + +  +  + V 
Sbjct: 893  LIKAGAFDSIHMNRAALVASIDRAFDFSAATLANVNQGGLFDMMGDDAHGSSTQEPDLVD 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITEL 996
               W  K+ L +EK  +GF LS H+F    TE+R+F+   + EL  +    V +GI+++ 
Sbjct: 953  AVPWGIKERLTQEKTAVGFYLSGHLFDEVATEVRRFVRTSIDELLDSREPQVLAGIVSDF 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++    RGK+ +  +DD S  +E   +  L    +N LKE+E +++ G++  D F   +R
Sbjct: 1013 RVINGQRGKLGLFRLDDKSGVIEASADEALLNTYRNQLKEDEFVVMMGRLQLDHFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSVM 1079
            +  ++++D+  AR  +GK   V+
Sbjct: 1073 VKVQQVWDLAGARCRFGKYLHVL 1095


>gi|253996658|ref|YP_003048722.1| DNA polymerase III subunit alpha [Methylotenera mobilis JLW8]
 gi|253983337|gb|ACT48195.1| DNA polymerase III, alpha subunit [Methylotenera mobilis JLW8]
          Length = 1160

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/1149 (50%), Positives = 793/1149 (69%), Gaps = 29/1149 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR HSEYS++DG++RI+D ++ A +D  PALA+TDLSNLFG +KFYK+A  KG+K
Sbjct: 12   PSFVHLRCHSEYSVVDGIVRIDDYVKQAVSDKMPALALTDLSNLFGAVKFYKAARGKGVK 71

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIGCD+W+ N    + PSRLLLL +++ GYL LC LLS+AY+ N   GRAE +  W  +
Sbjct: 72   PIIGCDIWLENTENRELPSRLLLLCQSHTGYLTLCHLLSRAYLTNQYRGRAEFKRAWFAE 131

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFK----QPN 178
               +  L+   G    D+G A   G   +A+  A  W ++FP+ FY+E+QR      + +
Sbjct: 132  AGTEGLLLLSGGLAG-DVGQACAQGNVVLAKKLANEWQQLFPERFYLEVQRIATDAGKAS 190

Query: 179  MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
                IQ   +IA  ++LPIVATHPIQF    ++ AHE RTCIAEG +L++ +R + FT E
Sbjct: 191  EEMYIQHVRHIAHELSLPIVATHPIQFTSPDDYRAHEARTCIAEGYVLADKRRPQNFTTE 250

Query: 239  QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
            Q FKTQ+++  LF D+P A+ N++EIAKRCNL L  GK  LP+FPTP N ++ND+LIS++
Sbjct: 251  QYFKTQADIAALFADMPEALANSVEIAKRCNLSLTLGKNYLPQFPTPNNESLNDYLISEA 310

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            + GL KRL  L+ + E+   ++  Y  RL FE   I +M F+GYFLIV+DFI WAKNN +
Sbjct: 311  RLGLAKRLEVLFPNEEVRASKQDVYAARLDFETNVINQMGFAGYFLIVADFINWAKNNGV 370

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA S+VAYSL ITD+DPL YNLLFERFLNP+R+SMPDFDIDFC EGRDRVI 
Sbjct: 371  PVGPGRGSGAGSVVAYSLGITDLDPLEYNLLFERFLNPDRVSMPDFDIDFCQEGRDRVID 430

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YVK +YG DAVSQI TFGTMAAK  IRDVGRVLDL ++F D I+KLIP + G  ITLS+A
Sbjct: 431  YVKQKYGIDAVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPLELG--ITLSDA 488

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++EPQLAER +NEEEV++L+ELA ++EG++RN+GMHAGGVLI+PSK+ +F P+Y Q   
Sbjct: 489  LEKEPQLAERRENEEEVKELLELALRLEGLVRNIGMHAGGVLISPSKIADFSPVYCQPDG 548

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL--NKLPLNDK 596
              ++SQYDKDD+E +GL+KFDFLGL TL+ILD  +    K   +     L    LP++DK
Sbjct: 549  ASLVSQYDKDDVEAVGLVKFDFLGLRTLTILDMALENANKQRAERELPPLFFETLPIDDK 608

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
             T+ LLK ANT AVFQLES+GMK+MLK+A PD FE+IIAL++LYRPGPMDLI ++CRRKH
Sbjct: 609  PTFQLLKTANTTAVFQLESRGMKDMLKQAMPDCFEDIIALVALYRPGPMDLIPDYCRRKH 668

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G +   YP P T+ +L ETYGI VYQEQVMQIAQ++ GYSLG ADLLRRA+GKKK  EM 
Sbjct: 669  GKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKKEEMD 728

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
              RK F  GA K  +++ +A+++F+ +EKFAGYGFNKSHA AYAL++Y+TAYLKTHY + 
Sbjct: 729  AQRKIFTEGATKNNMTEQQASDLFDLLEKFAGYGFNKSHAAAYALVAYHTAYLKTHYPAA 788

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            F+AA +S  M++T+ + I   D      + +LPP++N S++ F P+        +I YGL
Sbjct: 789  FLAATMSADMNNTDSVHIFYDDCAPN-QVEVLPPDVNESEFKFKPV-----SKNQILYGL 842

Query: 836  GAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GA+KGTG + I+ I+  R K G FT+LFDF  R+D + +NRR+I SLI +GAFD     R
Sbjct: 843  GAVKGTGSAAIDVILQARAKDGPFTSLFDFCSRLDLRKVNRRVIESLIRAGAFDKLEPNR 902

Query: 895  YMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
            + L+A + +A+  AE+T    NQ SLF    + ++    N   V  W ++Q L EEK  L
Sbjct: 903  HALLAGVALAISAAEQTNANSNQNSLFGEASDQSVHVLPN---VTPWPEQQRLQEEKIAL 959

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDD 1013
            GF  S H +  Y+ ++ QFI   L+ L P      ++GI++ ++++ T RGK+ I+ +DD
Sbjct: 960  GFYFSGHPYWSYQKDLSQFISTTLANLAPKEQPQLLAGIVSGVRVRMTARGKMAIVGLDD 1019

Query: 1014 NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYG 1073
             +  +EV++ N L  +++ +LK+++L+IV G+V  D F   +R+NA K++D++  R    
Sbjct: 1020 GTTRIEVVVGNDLLNQSQQLLKDDQLVIVEGRVSHDEFSGGVRVNARKMYDLSALRNTRA 1079

Query: 1074 KKFSVMFNRTFNISILKKILLRFKCKN------GLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
                +M N   + + L K LL+  C        G P  + Y  N++ K E+    +++V 
Sbjct: 1080 SFLKIMCNGQSDAAKL-KTLLKPYCVGLSEEVRGCPIKIEYH-NQTSKVELMLGNDWRVD 1137

Query: 1128 PIDDLKLAL 1136
              D+L  +L
Sbjct: 1138 LHDELIASL 1146


>gi|121611396|ref|YP_999203.1| DNA polymerase III subunit alpha [Verminephrobacter eiseniae EF01-2]
 gi|121556036|gb|ABM60185.1| DNA polymerase III, alpha subunit [Verminephrobacter eiseniae EF01-2]
          Length = 1186

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1105 (49%), Positives = 756/1105 (68%), Gaps = 37/1105 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+H+E+S++DG  RI++V  AAA D QPALAITDL+NLFG +KFYK+  ++G+KPI
Sbjct: 2    FVHLRMHTEFSVVDGTNRIDEVARAAAADGQPALAITDLNNLFGAVKFYKATRSQGVKPI 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++++        P+RL++LV+++ GYL L ELL++A+   +   +A     WLE+  
Sbjct: 62   VGAEIFLPGPA-GAAPARLIVLVQSHQGYLNLSELLTRAWTRGVVKNQALCHWAWLEE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI L+GA  G +G A+  G +  A   A R + +FP  F+IE+QR  + +    + 
Sbjct: 119  LAEGLIVLAGAQAGPVGQALLKGDDAGAAETALRLAGMFPHRFFIELQRAGRADDESHVA 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
                +A+ + LP+VATHP+QF +  ++ AHE R CIAEG+IL+N +R +KFT++Q FK+ 
Sbjct: 179  AAAALAARLRLPVVATHPVQFARADDYEAHEARICIAEGDILANPRRQRKFTRDQYFKSA 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM +LF D+PSA+ NT+EIA+RCNL L  GKP+LP FPTP  + I  +    S +GL++
Sbjct: 239  AEMQRLFADLPSALANTVEIARRCNLTLVLGKPQLPDFPTPGGMPIEAYFRVASVNGLEQ 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RLL LY +P   + ++ RY  RL+FEI TI++M F+GYFLIV DFIQWA+NN  PVGPGR
Sbjct: 299  RLLCLYPEPAQREQQRPRYLARLEFEIGTIVEMGFAGYFLIVGDFIQWARNNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY++ ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   RDRVI YVKD+Y
Sbjct: 359  GSGAGSLVAYAMGITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQANRDRVIDYVKDKY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS---NAIKE 481
            GKDAVSQI TFGTMAAK AIRDVGRV+D+ Y+FCD I+KL+P KPG   TL    N  KE
Sbjct: 419  GKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGIAKLVPAKPGISYTLQYPPNPKKE 478

Query: 482  ----------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                      EPQLAER++ EE+VR +IE+A+++EG+ RN+GMHAGGVLIAP KL +FCP
Sbjct: 479  GDKNHYVLELEPQLAERMRKEEDVRTVIEMAQKLEGLTRNIGMHAGGVLIAPGKLTDFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+  G    +SQYDKDD+E IGL+KFDFLGL TL+IL     FI   +    +FS + +
Sbjct: 539  LYQPPGSASAVSQYDKDDVEAIGLVKFDFLGLATLTILQLAREFIVGRHKGQQDFSYDAI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
             L+D  TY L  +  T AVFQ ES+GM+ MLKEA+P    ++IAL +LYRPGPMDLI +F
Sbjct: 599  ALDDGPTYRLFSEGQTEAVFQFESRGMQGMLKEARPSRLGDLIALNALYRPGPMDLIPSF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RK+G E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG AD+LRRA+GKKK
Sbjct: 659  INRKNGKEPVLYPHPLVESVLAETYGIMVYQEQVMQTAQLLGGYSLGGADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM EHR  F+ GA + GLS+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T +LK 
Sbjct: 719  AEEMAEHRAIFRKGAAEKGLSQEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F  AN+++ MDDT+K+K+L +DA K  GL+  PP++N   + F P+      +K 
Sbjct: 779  HYTAEFFCANMTVEMDDTDKLKVLFEDARKM-GLAFEPPDVNRGGHRFEPV-----SNKI 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTERK----------FGFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGAIKGTG+  IEAIV  R+           G F +LFDF  R+D+  +N+R + +
Sbjct: 833  IRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGACSGPFKSLFDFCVRVDRARLNKRTVEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI +GAFD     R  LVASID A   A  T   +NQ SLF     D + + ++    V 
Sbjct: 893  LIKAGAFDSIERHRAALVASIDRAFDFAAATLANVNQGSLFDMMGADAHGSSQQEPELVG 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITEL 996
               W  +++L++EK  +GF LS H+F     E+R+F+   + EL  +    V +GI+ +L
Sbjct: 953  AAPWGIREQLMQEKTAVGFYLSGHLFDEVAAEVRRFVRTAIDELTDSREPQVLAGIVCDL 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            ++    RGK+ +  +DD +  +E   +  L+++++  LKE+E +++ G++  D F   +R
Sbjct: 1013 RVINGQRGKLALFRLDDKTGVIESSADEALFDRHRQQLKEDEFVVLQGRLQPDHFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSVMFN 1081
            +  ++++D+  AR  +GK   V+  
Sbjct: 1073 LKVQQVWDLAAARCRFGKYLHVVLR 1097


>gi|372487933|ref|YP_005027498.1| DNA-directed DNA polymerase III PolC [Dechlorosoma suillum PS]
 gi|359354486|gb|AEV25657.1| DNA-directed DNA polymerase III PolC [Dechlorosoma suillum PS]
          Length = 1151

 Score = 1128 bits (2917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1140 (49%), Positives = 789/1140 (69%), Gaps = 20/1140 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI DG++R++D +  A  D QPA+A+TDL+N FG++KFY +   KG+K
Sbjct: 4    PRFVHLRLHSEYSITDGIVRLDDAVARAIADGQPAMALTDLANAFGLVKFYNACRGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+ G DVWI NE E  +P RLLLLV+++ GYLQLCELLS+AY+      RAEI+  W ++
Sbjct: 64   PVAGADVWIANETETDRPFRLLLLVRSHRGYLQLCELLSRAYLAEGRRDRAEIKRAWFDE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                DGLIALSGA  GD+G A+  G  D+A   A+ WS  FP  FY+E+QR   P     
Sbjct: 124  VGC-DGLIALSGAKDGDVGDALLAGNRDLAAARAKAWSAQFPQAFYLEVQRAGHPQQEQL 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +    ++ +++ LP+VATHPIQFL   +F AHE R CIAEG +L + +R K FT++Q FK
Sbjct: 183  VSATADLGADLELPLVATHPIQFLDADDFKAHEARVCIAEGYVLGDRRRPKTFTEQQYFK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM +LF D+P A++NT+EIAKRCNL L  GK  LP+FPTP  I+++  LI+++K GL
Sbjct: 243  TQAEMAELFADLPEALENTLEIAKRCNLTLTLGKNFLPQFPTPDGISLDQHLINEAKAGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+ DPE  +  +  Y +RL+ E +TI++M F GYFLIV+DFI W K+N +PVGP
Sbjct: 303  EKRLELLFPDPEERQRRRPEYDERLEIETKTIVQMGFPGYFLIVADFINWGKHNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC + R RVI+YV+ 
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQDNRWRVIEYVRH 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTM++K  IRDVGRVLDL Y+FCDS+SKLIP +  K ++L+ A++ E
Sbjct: 423  KYGVDAVSQIATFGTMSSKAVIRDVGRVLDLPYNFCDSLSKLIPVEANKPVSLAQALEME 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E+++ EEEV +L ELA ++E + RNVGMHAGGVLIAP KL +FCPLY Q G   ++
Sbjct: 483  PQLKEKMEEEEEVAELFELAMKLEDLTRNVGMHAGGVLIAPGKLTDFCPLYAQPGSDSVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E++GL+KFDFLGL  L+I++  + +++++  +     L  LP  D   Y +L
Sbjct: 543  SQYDKDDVEKVGLVKFDFLGLRNLTIIELAVEYVERLTGE--KLDLLSLPFTDPAAYQIL 600

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHGEY- 659
            K ANT A+FQ+ES+GMK +LK+  PD FE+IIA+++LYRPGP+   ++ +F  RK G+  
Sbjct: 601  KDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKKGQQK 660

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
             +Y  P  K  L  TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM +HR+
Sbjct: 661  IDYFHPDLKGCLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKAEEMAKHRE 720

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
                GA K G     A ++F+ + KFA YGFNKSH  AYA+++Y+TA+LK H+ S FMAA
Sbjct: 721  TIAEGAKKKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAMVTYHTAWLKAHHCSAFMAA 780

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  MD+T+ +KI  +D +K  G+ +LPP++N S Y F P+   DG  K IRYGLGA+K
Sbjct: 781  TMSSDMDNTDTVKIFYEDTVKN-GIKVLPPDVNHSDYRFVPV---DG--KTIRYGLGAVK 834

Query: 840  GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN--EKRYM 896
            GTG+  +E I+  R + G F +LFDF  R+DK+ +NRR I +LI +GAFD  +    R  
Sbjct: 835  GTGQQAVECILAARAEGGPFKDLFDFCLRVDKRLVNRRTIEALIRAGAFDTLDPSRDRAQ 894

Query: 897  LVASIDVALKNAEKTKKFINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
            L+AS+ +A++ A++ ++  +Q  LF+     ++ + E   YV V  WS KQ L+EEK  L
Sbjct: 895  LIASVSIAMEAADQAERNAHQGGLFEMFGSGDDAVAEAPQYVSVRPWSDKQRLLEEKTAL 954

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDD 1013
            GF  S H F    +E ++F    LS L P     T++G++ +L++K T RG++ II++DD
Sbjct: 955  GFFYSGHPFDSIRSEAKRFAGRPLSALAPAREPQTLAGVVMDLRVKMTSRGRMGIIILDD 1014

Query: 1014 NS-NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
             S  S+EV + +++++ ++N LK +E LI+ GKV +D F   +RI AE ++ +  AR  +
Sbjct: 1015 GSCPSLEVTVYSEVFDAHRNKLKVDEPLIIEGKVSKDDFRDGLRIVAENLYTLPEARTRF 1074

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
             ++  +  N   +   L+++L  F+ + G P  + Y  N   + E+      +V+P DDL
Sbjct: 1075 ARQLRLSMNGQADARKLQELLTPFRMEGGCPVRIAY-RNGEAQCELILGEGTRVRPDDDL 1133


>gi|118594636|ref|ZP_01551983.1| DNA polymerase III, alpha subunit [Methylophilales bacterium
            HTCC2181]
 gi|118440414|gb|EAV47041.1| DNA polymerase III, alpha subunit [Methylophilales bacterium
            HTCC2181]
          Length = 1154

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/1072 (51%), Positives = 757/1072 (70%), Gaps = 23/1072 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR HSEYSI DG++RI + I+ A +   PAL +TDLSNLFG +KFYK+A   GIK
Sbjct: 7    PSFIHLRCHSEYSITDGIVRIPEYIKKAVDTGMPALGLTDLSNLFGAVKFYKAATQSGIK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCDVWI NE    +P R+ L  +N  GY+ L ELLSKA++ N + G+A ++  W+  
Sbjct: 67   PILGCDVWIENETNPDQPYRMALFCQNQQGYIHLSELLSKAFLTNQSRGKAILKKSWVLN 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF----KQPN 178
                DGLIALSGA  G+IG  +   + D A+     W  IF D FY+EIQR+    ++  
Sbjct: 127  A--HDGLIALSGALKGNIGYLLDQNKIDEAQEELSAWRAIFGDRFYLEIQRYGSDARKKK 184

Query: 179  MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
                IQ+ I +A N  +P+VATHPIQF+   +F AHE +TCIA+G +L++ +R K FT E
Sbjct: 185  QEEYIQKAIFLAVNNQVPLVATHPIQFMHTDDFRAHESKTCIADGYVLADQRRPKDFTPE 244

Query: 239  QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
            Q FKT  EM++LF+DIPSA  NT+ IAKRCN + + G+  LP FP P    I D+L+ ++
Sbjct: 245  QYFKTPEEMLELFHDIPSATHNTVTIAKRCNFQFQLGEIFLPDFPIPNGTKIEDYLLIEA 304

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            K GL +RL +LY D +  + +  +Y  RL FE++ I +M ++GYFLIV+DFI W+K+N I
Sbjct: 305  KKGLDQRLEDLYIDLKEREDQIPKYLDRLNFEVKVINEMGYAGYFLIVADFINWSKSNHI 364

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA S+VAYSL ITD+DPL+YNLLFERFLNP+R+SMPDFDIDFC EGRDRVI 
Sbjct: 365  PVGPGRGSGAGSVVAYSLGITDLDPLAYNLLFERFLNPDRVSMPDFDIDFCQEGRDRVID 424

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YVK +YG D+VSQI TFGTMAAK  +RDVGRVLDL Y+F D+I+KL+P + G  ITL +A
Sbjct: 425  YVKQKYGSDSVSQIATFGTMAAKAVLRDVGRVLDLPYNFVDTIAKLVPLELG--ITLKDA 482

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            I++EPQ+ +RIK EEEV++L +LA ++EG++RNV MHAGGVLIAP+K+  F P+Y Q G 
Sbjct: 483  IEKEPQIKDRIKKEEEVKELFDLALRLEGLVRNVSMHAGGVLIAPTKISAFSPIYCQPGA 542

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDK 596
             GI+SQ+DKDD+E +GL+KFDFLGL TL+I+   +     I ++       L  +P++DK
Sbjct: 543  EGIVSQFDKDDVEAVGLVKFDFLGLRTLTIVAMALENANHIRSQKGEDPLQLESIPIDDK 602

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
             T++LLK +NT AVFQLES+GMK+MLK+AKPD FE+IIAL++LYRPGPMDLI +FC+RKH
Sbjct: 603  PTFDLLKASNTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCKRKH 662

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G +   YP P T+ +L ETYGI VYQEQVMQIAQ++ GY+LG ADLLRRA+GKKK  EM 
Sbjct: 663  GQQQVKYPHPATESILKETYGIAVYQEQVMQIAQVVAGYTLGGADLLRRAMGKKKIEEMD 722

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
              R  F  GA+K+ L++ +A ++F+ +EKFAGYGFNKSHA AYA+++Y T YLK HY S 
Sbjct: 723  AQRATFVEGALKHELNQRQATDLFDLLEKFAGYGFNKSHAAAYAMIAYQTGYLKAHYPSA 782

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            F+AA++S  M++T+ + +L  D +    +++LPPNIN S+Y F P+      H+ I YGL
Sbjct: 783  FIAASMSADMNNTDNVHMLFDDCVLN-NITLLPPNINKSEYKFVPV-----DHESILYGL 836

Query: 836  GAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GA+KGTG S I+ I+ ER   G FT+LFDF  R+D + +NR+   SLI SGAFD     R
Sbjct: 837  GAVKGTGLSAIDIIIDERNANGPFTSLFDFAARLDLRKVNRKAFESLIRSGAFDEIEPNR 896

Query: 895  YMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
              L+AS+++A+  AE+      Q +LF+  +   +      V+V  W ++++L EEK  L
Sbjct: 897  ATLLASVNLAITKAEQANAHQGQNALFEEFETTEVP----LVEVGLWEERKQLAEEKIAL 952

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDD 1013
            GF  S H F  YE  IRQF+P  LSEL P  +   ++GII+ + ++ T RGKI I+ +DD
Sbjct: 953  GFYFSGHPFKFYEKMIRQFVPNKLSELTPRDATYLIAGIISTIHMRMTSRGKIAIVTLDD 1012

Query: 1014 NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
                ++V+I N++  +  +++KE++LL+V G+V  D F    R++A K+ D+
Sbjct: 1013 GVGRIDVVIGNKILTEVYDLVKEDKLLVVEGRVSHDDFTGGNRVSAMKVNDL 1064


>gi|34496366|ref|NP_900581.1| DNA-directed DNA polymerase III subunit alpha [Chromobacterium
            violaceum ATCC 12472]
 gi|34102219|gb|AAQ58585.1| DNA-directed DNA polymerase III, alpha subunit [Chromobacterium
            violaceum ATCC 12472]
          Length = 1144

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1140 (48%), Positives = 762/1140 (66%), Gaps = 14/1140 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSE+SI DG++R++D ++ AA +  PAL ++DL NLFG++KFYKS  NKGIK
Sbjct: 4    PRFVHLRLHSEFSITDGIVRLDDAVKRAAKEQMPALGVSDLMNLFGMVKFYKSCRNKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+  D+W+ NE +  KP RL+L  KN  GY +LCELL++A+  N   GRAEI+  WL  
Sbjct: 64   PIVSADIWLENEEDRDKPYRLMLTAKNREGYRRLCELLTEAFSHNQYRGRAEIKRAWLAS 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                + L+ LSGAHLGD+GIA+  G+ D A   A  W  +FP  FY+EIQR     +   
Sbjct: 124  GDNSN-LLCLSGAHLGDVGIALSMGQRDEARRRAEYWESLFPGAFYLEIQRVDSAQVENV 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q  + +A    LP+VATHPIQF++K +F AHE R CIAEG  L + +R + F++ Q F 
Sbjct: 183  VQATLWLAGETGLPVVATHPIQFMEKEDFKAHEARVCIAEGYTLGDKRRPRSFSECQYFL 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  +M++ F DIP A+ NT+EIAKRCN+ +  GK  LP FPTP  ++++DFL+ ++K GL
Sbjct: 243  SAEQMVERFADIPEALANTVEIAKRCNISVVLGKNYLPLFPTPDGMSLDDFLVHEAKRGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  LY D    + ++  Y  RL+FE +TII+M F GYFLIV+DFIQW K N  PVGP
Sbjct: 303  EERLKQLYPDEAERQEKRPDYDARLKFECDTIIQMGFPGYFLIVADFIQWGKANGCPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSLSITD+DPL Y LLFERFLNP R+SMPDFD+DFC E R RVI+Y + 
Sbjct: 363  GRGSGAGSLVAYSLSITDLDPLKYALLFERFLNPERVSMPDFDVDFCQENRWRVIEYTRR 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG++AVSQI TFGTM++K  IRDVGRVLDL +  CD +SKLIP +  K ++L  A++ E
Sbjct: 423  KYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDRLSKLIPLEANKPLSLEKAMQVE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG-MTGI 541
            PQ+ E I++ E  ++LIELA  +E + R +GMHAGGVLIAP +L +FCPLY   G     
Sbjct: 483  PQIGEIIES-EGAQELIELAMTLEDLTRGIGMHAGGVLIAPGRLTDFCPLYIASGDGASP 541

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +SQ+DKDD+E+IGL+KFDFLGL  L+I++    +IK +  +  + +   LPL+DK  Y +
Sbjct: 542  VSQFDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDLTGEDVDVA--HLPLDDKPAYKV 599

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFN 661
               ANT AVFQ ES GMK ML EAKP  FEEIIA ++LYRPGPMDLI +F +R HG  F 
Sbjct: 600  FATANTTAVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMDLIPDFIQRMHGAKFE 659

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            Y  P  + VL+ TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM+  R  F
Sbjct: 660  YLHPLLEPVLAPTYGIMVYQEQVMQSAQVIGGYSLGGADLLRRAMGKKKVEEMVAQRAMF 719

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
              GA K  + + KANEIF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK H+ + +MAA +
Sbjct: 720  VQGAAKQDIPEAKANEIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHHCAAYMAATM 779

Query: 782  SLSMDDTNKIKILVKDAIKT-CGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            S  +D+T+++K+   D      G++ LPP++N   Y F P+       K+IRY LGAIKG
Sbjct: 780  STELDNTDQLKVFYDDCQDPKNGVTFLPPDVNHGFYRFVPV-----SRKEIRYALGAIKG 834

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG+S +  IV  R+ G  FT+LFDF KR DKK +N+R+I +LI +GAFD     R +L A
Sbjct: 835  TGESAVNHIVEVREAGGPFTDLFDFCKRTDKKLVNKRVIEALIRAGAFDAIEPNRALLFA 894

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            ++ +A++ AE+     NQ  LF +   +++   +       WS   +L EEK  +GF LS
Sbjct: 895  NVGLAMEAAEQAHANANQGGLF-DMFGDDVAPAVEMAATRPWSDAVKLAEEKLAIGFYLS 953

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            +H F  YE E+R FI   LS L P      ++G +T +++K   RGK+  + +DD +  +
Sbjct: 954  DHPFSAYEKEVRGFIKTTLSRLTPRKEPQLLAGFVTGIRVKVGNRGKMAFVQLDDGTAKL 1013

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            EV +  + +E N++ LKE+ +L+V GKV ED F   +RI  +K++ +  AR  Y +  ++
Sbjct: 1014 EVSLFAESFELNRDKLKEDVVLVVEGKVSEDSFSGGLRIVVDKLYSLGEARSRYARGLAL 1073

Query: 1079 MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN 1138
                  +I+ LK  L  FK ++    V     N   K E+  P  + V+  D L L+L +
Sbjct: 1074 QLPAKPDIARLKSELHPFKSQDAGCLVRLAYNNGKAKGELMLPQEWGVRLDDGLLLSLAD 1133


>gi|297538821|ref|YP_003674590.1| DNA polymerase III subunit alpha [Methylotenera versatilis 301]
 gi|297258168|gb|ADI30013.1| DNA polymerase III, alpha subunit [Methylotenera versatilis 301]
          Length = 1169

 Score = 1126 bits (2912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1156 (51%), Positives = 790/1156 (68%), Gaps = 42/1156 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR HSEYSI+DG++RI+D ++ A ND  PALA+TDLSNLFG IKFYK+A  KGIK
Sbjct: 12   PIFVHLRCHSEYSIVDGIVRIDDYVKQALNDKMPALALTDLSNLFGAIKFYKTARGKGIK 71

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCD+W+ N     +P+RLLLL +++ GYL LC+LLS+AY+ N   GRAE + EW  +
Sbjct: 72   PILGCDIWLENTANRDQPTRLLLLCQSHAGYLLLCQLLSRAYLSNQYRGRAEFKREWFVE 131

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFK------- 175
                +GLI LSGA  GD+G A       +A   A+ W  +FPD FY+E+QR         
Sbjct: 132  CG-TEGLIMLSGAIAGDVGQACTQDNLALATKLAQSWENLFPDRFYLEVQRTASVAESST 190

Query: 176  ------QPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNT 229
                  Q      IQQ  +IA ++NLPIVATHPIQF+   +F AHE RTCI+EG +L++T
Sbjct: 191  PESNALQHQQENYIQQVRSIAHSLNLPIVATHPIQFITPDDFRAHEARTCISEGYVLADT 250

Query: 230  KRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNIN 289
            +R K FT EQ FK Q++M  LF DIP A+ N++EIAKRCNL L  GK  LP FPTP N +
Sbjct: 251  RRPKNFTTEQYFKPQADMATLFEDIPEALTNSVEIAKRCNLMLTLGKNYLPNFPTPNNES 310

Query: 290  INDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDF 349
            +N++LI++++ GL +RL  LY + E+   +K  Y  RL FE + I +M F+GYFLIV+DF
Sbjct: 311  LNEYLIAEARRGLLQRLEVLYPNEEVRAAKKPAYDARLDFETKVINQMGFAGYFLIVADF 370

Query: 350  IQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFC 409
            IQWAK N +PVGPGRGSGA S+VAYSL ITD+DPL YNLLFERFLNP+R+SMPDFDIDFC
Sbjct: 371  IQWAKGNGVPVGPGRGSGAGSVVAYSLKITDLDPLEYNLLFERFLNPDRVSMPDFDIDFC 430

Query: 410  PEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKP 469
             EGRDRVI YVK +YG DAVSQI TFGTMAAK  IRDVGRVLDL + F D ISKLIP + 
Sbjct: 431  QEGRDRVIDYVKQKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFYFVDGISKLIPLEL 490

Query: 470  GKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
            G  ITLS+A+ +EPQLAER +NEEE+++L+ELA ++EG++RN+GMHAGGVLI+P K+ +F
Sbjct: 491  G--ITLSDALVKEPQLAERRENEEELKELLELALRLEGLVRNIGMHAGGVLISPGKISDF 548

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKK--INTKTTNFS 587
             P+Y Q     ++SQYDKDD+E +GL+KFDFLGL TL+IL+  +    K          S
Sbjct: 549  SPVYCQADGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILELALANANKQRATEGLAPLS 608

Query: 588  LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
               LPLNDK T+ LLK ANT AVFQLES+GMK+MLK+A PD FE+IIAL++LYRPGPMDL
Sbjct: 609  FETLPLNDKPTFQLLKTANTTAVFQLESKGMKDMLKQALPDCFEDIIALVALYRPGPMDL 668

Query: 648  IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            I +FCRRKHG +   YP P T+ +L ETYGI VYQEQVMQIAQ++ GYSLG ADLLRRA+
Sbjct: 669  IPDFCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYSLGGADLLRRAM 728

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   RK F  GA K  +++ +A E+F+ +EKFAGYGFNKSHA AYAL++Y TA
Sbjct: 729  GKKKVEEMDAQRKTFVEGATKNNMTERQAMELFDLLEKFAGYGFNKSHAAAYALVAYQTA 788

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            YLK HY + F+A+ +S  M++T+ ++I  +D      + IL P++N S+Y F PI     
Sbjct: 789  YLKAHYPAAFLASTMSADMNNTDSVRIFYEDCAPN-QVKILSPDVNQSEYKFTPI----- 842

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
               ++ YGLGA+KGTG++ IE I+   RK G F +LFDF  R+D + +NRR++ SLI +G
Sbjct: 843  SKNQVLYGLGAVKGTGQAAIEVILQARRKDGPFKDLFDFCNRLDLRKVNRRVVESLIRAG 902

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKN--DDNNNLKEYLNYVKVPSWSK 943
            AFD  +  R  L+A + +A+  AE+     NQ SLF    D   N+        VP W++
Sbjct: 903  AFDKLSPSRNALLAGVAMAMAAAEQNSANSNQNSLFGEVADKAANI-----LPMVPDWTE 957

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTY 1002
            +Q L EEK  LGF  S H +  ++ ++ QFI   L+ L P      ++GI++ ++++ T 
Sbjct: 958  QQRLQEEKAALGFYFSGHPYWAFQKDLSQFISTTLANLAPKEQPQLLAGIVSGVRIRMTG 1017

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            RGKI I+ +DD +  +EV++ ++L  + + +LK+++L+I+ G V  D F   +R+NA KI
Sbjct: 1018 RGKIAIVGLDDGTTRLEVVVGSELLNQQQALLKDDQLIIIEGTVRNDEFSGGVRVNARKI 1077

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN------GLPFVLYYCINKSIKY 1116
            FD+   R        +  N   + +I  K LL+  CKN      G    + Y  NK+ K 
Sbjct: 1078 FDLPTLRNSKASFLKISCNGQAD-AIKLKALLKPYCKNASDEARGCAVKVEYH-NKTSKV 1135

Query: 1117 EMKFPLNYKVQPIDDL 1132
            E+    +++V   D+L
Sbjct: 1136 ELMLGNDWRVDLHDEL 1151


>gi|160898940|ref|YP_001564522.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1]
 gi|160364524|gb|ABX36137.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1]
          Length = 1194

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1102 (49%), Positives = 752/1102 (68%), Gaps = 37/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RIN +++AAA D Q ALA+TD +NLFG +KFY+    KG+KP+
Sbjct: 19   FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++ I  E      SR+++LV++  GY  L ELL++ +  N+  G+A     WL++  
Sbjct: 79   LGAEIQIEGE-NGAAVSRIIVLVQSPLGYHNLSELLARGWTRNVVKGQAVHTWAWLQE-- 135

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI L+GA  G +G A+  G    A   A+R + +FP  F+IE+QR  +P+    + 
Sbjct: 136  LGEGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLASMFPHRFFIELQRAGRPDDEAHVL 195

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +NLP+VATHPIQF    ++ AHE R CIAEGEIL+N KR+++FT++Q+FKT 
Sbjct: 196  AAVQLADRLNLPVVATHPIQFFGPDDYEAHEARVCIAEGEILANPKRVRRFTRDQHFKTA 255

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            ++M  LF DIPSAI NT+EIA+RC+L L  GKP+LP FP P  + +++F  S+S +GL+ 
Sbjct: 256  AQMQALFADIPSAIANTVEIARRCSLTLVLGKPQLPNFPVPDGMTMDEFFRSESFNGLED 315

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL +LY DP   + ++ RY +RL+FEI TI+KM F GYFLIV DFI+WAK N  PVGPGR
Sbjct: 316  RLTHLYPDPAKREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIKWAKLNGCPVGPGR 375

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY L ITD+DPL YNLLFERFLNP R+SMPDFD+DFC   RDRVI YVK  Y
Sbjct: 376  GSGAGSLVAYVLKITDLDPLEYNLLFERFLNPERVSMPDFDVDFCQANRDRVIDYVKQLY 435

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL--------- 475
            G+DAVSQI TFGTMAA+ AIRDVGRVLD+ Y+FCD ISKLIP KPG  +TL         
Sbjct: 436  GRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGLHVTLKYPPNPKKE 495

Query: 476  ----SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                + AI+ EP LAERI+ EE+V+ LIE+A+++EG+ RN+GMHAGGV+IAP KL +FCP
Sbjct: 496  GDKYTYAIEAEPMLAERIEKEEDVKTLIEMAQKLEGMTRNIGMHAGGVVIAPGKLADFCP 555

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    ++ YDKDD+E +GL+KFDFLGL TL+IL+    FI K +    NF+   +
Sbjct: 556  LYQQPGSDSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIIKRHKGQENFAFENI 615

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY L  +  T AVFQ ES+GM+ ML++AKP   E++IAL +LYRPGPMDLI +F
Sbjct: 616  PLDDARTYQLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNALYRPGPMDLIPSF 675

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG ADLLRRA+GKKK
Sbjct: 676  VARKHGKEVVEYPHPLVEQVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK 735

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM+ HR  F+ GA K G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+TA+LK 
Sbjct: 736  VEEMVMHRGIFREGAAKQGISEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTAWLKV 795

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F   N+++ MD+T+K+K+L +DA+K  G+S  PP++N   Y F P+ +     K 
Sbjct: 796  HYTAEFYCGNMTVEMDNTDKLKVLYEDALKM-GISFEPPDVNRGMYRFEPVTD-----KV 849

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGAIKGTG+  IEAIV  R+           G F +L DF  R+D+  +N+R + +
Sbjct: 850  IRYGLGAIKGTGQQAIEAIVAAREGRGVGPRGADKGPFKSLADFCVRVDRTRLNKRTLEA 909

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI  GAFD     R  LVASID A +   KT    NQ  LF    +D   +  +    V+
Sbjct: 910  LIKGGAFDAIELNRASLVASIDHAFEFGNKTLANANQGGLFDMMGDDAVGSSTQEPPLVE 969

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITEL 996
               W  K+ L +EK  +GF LS H+F   E E+R+F+   L+EL+ +    T++GII++ 
Sbjct: 970  ALPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPLAELRDSREPQTLAGIISDF 1029

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +     RG++ +  IDD S  +E  ++       + +LK++E ++++G++  D F   +R
Sbjct: 1030 RAINGQRGRLGLFKIDDGSGVIEASVDENTLNTYRELLKDDEFVVITGRLQLDHFSGGLR 1089

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            + A++++++  AR  + +   V
Sbjct: 1090 MKAQQLWNLADARCRFARYLQV 1111


>gi|383757223|ref|YP_005436208.1| DNA polymerase III alpha subunit DnaE [Rubrivivax gelatinosus IL144]
 gi|381377892|dbj|BAL94709.1| DNA polymerase III alpha subunit DnaE [Rubrivivax gelatinosus IL144]
          Length = 1169

 Score = 1124 bits (2906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1099 (50%), Positives = 753/1099 (68%), Gaps = 30/1099 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR H+EYS++DG LRI+D  +AA  D QPALAITDLSNLFG IKFYK+    G+KP+
Sbjct: 3    FVHLRTHTEYSVVDGTLRIDDAADAAKADGQPALAITDLSNLFGAIKFYKACRGAGVKPV 62

Query: 65   IGCDVWITN--EIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            +G DVW+    +   ++P+RL LLV++  GYL LCELL++A+ +N+   +A ++ EWL  
Sbjct: 63   VGVDVWMDPLPDAAERQPTRLALLVQDRGGYLNLCELLARAWTQNVQRNQAWLKWEWL-- 120

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +   GLIA+SGA +G +G A+  G  + A   AR  + IFP  FY+E+QR   P    Q
Sbjct: 121  RELSGGLIAMSGADMGAVGQALLAGDEERAAAAARELADIFPGRFYLELQRAGLPTNEAQ 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            ++  + +A+ + LP+VATHPIQFL   +F AHE R CIAEGE L+N KRIK+FT+EQ+FK
Sbjct: 181  VRAAVPLAARLGLPVVATHPIQFLGPDDFEAHEARVCIAEGETLANPKRIKRFTREQHFK 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T  +M  LF D+PSAI NT+EIA+RC+L L  GKP+LP FPTP    I  +    S  GL
Sbjct: 241  TAEQMQALFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPDGSPIEVYFRKASHEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  L+   E     +  Y +RL+FE++TI+KM F GYFLIVSDFI WAK N  PVGP
Sbjct: 301  EKRLAALFPKEEERDKRRPEYVERLEFELDTILKMGFPGYFLIVSDFIVWAKANGCPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   RDRVI+YVK+
Sbjct: 361  GRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQGNRDRVIRYVKE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN----- 477
            +YG+DAV QI TFGTMAAK A+RDVGRVL + Y   DSI+KLIP  PGK +TL+      
Sbjct: 421  KYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPGKTVTLAKVPEKP 480

Query: 478  ------AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                  A +EEP++  R   EEEV +L+ LA +VEG++RN+GMHAGGVLIAP K+ +FCP
Sbjct: 481  DPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRNIGMHAGGVLIAPGKITDFCP 540

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    +I        +FS   L
Sbjct: 541  LYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELARQYIVARRPNMKDFSYETL 600

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D+  Y L     T AVFQ ES+GM+ ML+EAKP   E++IAL +LYRPGPMDLI  F
Sbjct: 601  PLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLEDLIALNALYRPGPMDLIPTF 660

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL ETYG+MVYQEQVMQ AQ+LGGYSLG ADLLRRA+GKKK
Sbjct: 661  VARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK 720

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM +HR  F+ GA K  + + KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+TA++K 
Sbjct: 721  AEEMAKHRAIFREGAAKKDIPEAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTAWIKV 780

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            H ++ F AAN+++  D+T+K+K+L+ DA K  G+   PP++N     F PI     + K+
Sbjct: 781  HCTAEFFAANMTIEADNTDKLKVLLADA-KLFGIRFDPPDVNTGTLRFEPI-----EDKR 834

Query: 831  IRYGLGAIKGTGKSTIEAIVTERK------FGFFTNLFDFTKRIDKKYINRRIINSLINS 884
            IRYGLGA+KGTG   IEAIV  R+       G F +LFDF  R+D++ +N+R++ +LI +
Sbjct: 835  IRYGLGAVKGTGAGAIEAIVAAREGRSGDGGGPFRSLFDFCARVDRQRVNKRVVEALIKA 894

Query: 885  GAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK-NDDNNNLKEYLNYVKVPSWSK 943
            GAFD  +  R   +AS+ +A + A+      +Q  LF   D + +  +    V V  WS 
Sbjct: 895  GAFDSLHADRAATLASVGLAFEWADTQAANKDQGGLFDFGDAHGSSTQEPALVAVEPWSV 954

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTY 1002
            ++ L++EK  +GF LS H+F     E+R+F+   + EL  +    +V+GI++EL++    
Sbjct: 955  RERLMQEKIAIGFYLSGHLFDACRDEVRKFVRRDIVELVDSREPQSVAGIVSELRVINGQ 1014

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            RG++ I  +DD S ++E + N +L + ++ +L+E+EL+IV GK+  DRF   +R+NA+++
Sbjct: 1015 RGRVAIFKLDDGSEAIEAVANEELLDASRELLREDELVIVVGKLQPDRFSGGLRLNAQQV 1074

Query: 1063 FDINVARILYGKKFSVMFN 1081
            +D+  AR  +G+  SV  N
Sbjct: 1075 WDLATARARFGRYLSVEVN 1093


>gi|302877644|ref|YP_003846208.1| DNA polymerase III subunit alpha [Gallionella capsiferriformans ES-2]
 gi|302580433|gb|ADL54444.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans
            ES-2]
          Length = 1204

 Score = 1124 bits (2906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1155 (47%), Positives = 768/1155 (66%), Gaps = 73/1155 (6%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLRLHSEYSI DG+ RI++ ++AA  D  PALA+TDLSN  G++KFYK    KG+K
Sbjct: 4    PVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRGKGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+ G DV+ITNE +  +P RLLLL +++ GYL+LC LLS+AY+ N    RAE+R EW  K
Sbjct: 64   PVAGVDVFITNEADRDRPYRLLLLCQSSEGYLRLCRLLSRAYLSNQYRERAELRREWF-K 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            ++  +GLIALSGAHLGD+G A+ +G    A  +A+ W+ +F D +YIE+QR    +    
Sbjct: 123  DEGTEGLIALSGAHLGDVGCALMSGNVAEARRYAQGWAALFEDRYYIEVQRAGFADEAAY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +     +A+ ++LP+VATHP+QFL   +F AHE R CIAEG +L++ +R K FT +Q FK
Sbjct: 183  VDAATALAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDKRREKAFTAQQYFK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM +LF D+P A+QN++EIA+RCNL L  GKP+LP FPTP   +++DF++S+S+ GL
Sbjct: 243  TQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGESLDDFMLSESERGL 302

Query: 303  KKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKN------ 355
              R+  LY D E  + EK  +Y +RL FEI TIIKM F GYFLIV+DFI+WAK       
Sbjct: 303  ADRMAFLYPD-EAERAEKFPQYHERLLFEINTIIKMGFPGYFLIVADFIRWAKAYRSDAF 361

Query: 356  -NSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
             N +PVGPGRGSGA SLVAY L ITD+DPL Y LLFERFLNP R+SMPDFD+DFC +GR+
Sbjct: 362  PNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPERVSMPDFDVDFCQDGRE 421

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
             VI YVK +YG   VSQI TFGTMA+K  IRDVGRV++  Y  CD +SK IP +  K ++
Sbjct: 422  LVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLCDRLSKAIPLEGVKPVS 481

Query: 475  LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
            L  A + EP++    ++EE V +L+ELA ++E + RNVGMHAGGV+IAP KL +FCPLY 
Sbjct: 482  LQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGGVVIAPGKLTDFCPLYC 541

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--------- 585
             +G   ++SQ+DKDD+E IGL+KFDFLGL TL+I+D  +  I ++  +            
Sbjct: 542  ADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHRLQARDRKGLPRTTNET 601

Query: 586  ----------------------------FSLNKLPLNDKDTYNLLKKANTVAVFQLESQG 617
                                        FS+  +PL+DK +Y+LLKK NT AVFQLES+G
Sbjct: 602  TTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDLLKKCNTTAVFQLESRG 661

Query: 618  MKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGEY-FNYPDPRTKDVLSET 674
            MK+++K  +PD FE+I+AL++L+RPGP++  ++ +F  RKHG    +Y  P  +  L  T
Sbjct: 662  MKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRATADYFHPELEASLKPT 721

Query: 675  YGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHK 734
            YG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKK  +EM   R  F +GA+   + K  
Sbjct: 722  YGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQRDIFVSGALNREIDKDL 781

Query: 735  ANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKIL 794
            A  +F+ +E FAGYGFNKSH+ AYAL++Y TAYLK H+ + FMAA LS  +D+T K++  
Sbjct: 782  ATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMAATLSGDLDNTEKVRTF 841

Query: 795  VKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK 854
              D ++  G++IL P++N S Y F P  E     K I YGLGAIKGTG++ I +IV  R 
Sbjct: 842  YADTLQQ-GITILLPDVNSSGYAFSPTDE-----KTISYGLGAIKGTGEAAIASIVKARA 895

Query: 855  FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKF 914
             G F +LFDF +R+DK+ +NRR I +LI +GAFD  N+ R  L+AS+D AL +A++  + 
Sbjct: 896  TGPFKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAALASADQQARS 955

Query: 915  INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFI 974
            INQ SLF  DD + +        VP WS +++L  EK  LG  L  H +  YE E+  FI
Sbjct: 956  INQDSLFGEDDADAVL-IEQKSDVPRWSLREQLAFEKVSLGIYLGGHPYQEYEKELTNFI 1014

Query: 975  PIYLSELKPTY----------------SCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
             + L +L P +                   ++GI++ L+L+ T RG++ +I +DD S  +
Sbjct: 1015 KVRLGDLTPAFLGKNSGSGGYVSRRGVQVRLAGIVSGLRLQQTRRGRMAVITLDDGSAQI 1074

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            E+ + N+ YEK++  + E+ELL+V GK   D +  NIR++ E++F+   AR  + ++  +
Sbjct: 1075 ELTVFNEEYEKSRQWIVEDELLVVEGKASLDEYSGNIRVSGEELFNFAQARSRFARQLEL 1134

Query: 1079 MFNRTFNISILKKIL 1093
              N + NI+ LK+IL
Sbjct: 1135 HCNSSVNIAQLKEIL 1149


>gi|398805978|ref|ZP_10564932.1| DNA-directed DNA polymerase III PolC [Polaromonas sp. CF318]
 gi|398090047|gb|EJL80539.1| DNA-directed DNA polymerase III PolC [Polaromonas sp. CF318]
          Length = 1181

 Score = 1122 bits (2901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/1089 (51%), Positives = 759/1089 (69%), Gaps = 22/1089 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RI++V+ AAA D QPALAITDLSNLFG +KFYK     G+KP+
Sbjct: 23   FVHLRLHTEFSVVDGTNRIDEVVAAAAADGQPALAITDLSNLFGTVKFYKETRGAGVKPL 82

Query: 65   IGCDVWIT--NEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            IG D+W+    +      +RLLLLV++  GYL L E+L++A+ +N+   +A +++EWL++
Sbjct: 83   IGADIWVQVPGKDAGAPAARLLLLVQSRQGYLNLSEILTRAWTKNVVRDQAVVKLEWLQE 142

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLIALSGA  G +G A+  G +  A   A  ++ +FP  FY+E+QR ++P+    
Sbjct: 143  --LGEGLIALSGAQGGSVGQALLQGDSARAAECALYFAGLFPHRFYLELQRAQRPDDERH 200

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+ + LP+VATHP+QFL   ++ AHE R CI+EGEIL NT+R++KFT+EQ FK
Sbjct: 201  VVAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCISEGEILGNTRRVRKFTREQYFK 260

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPK----NININDFLISKS 298
            +  +M  LF D+P+A+ NT+EIAKRCNL LE GKP LP +PTP+     + I+++    S
Sbjct: 261  SAEQMQALFADVPTALANTLEIAKRCNLTLELGKPMLPDYPTPEVGGVRMPIDEYFRQAS 320

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
              GL++RL +LY+D  +   ++  Y KRL+FEI TI+KM F GYFLIV DFI WAKNN  
Sbjct: 321  FEGLEERLAHLYRDAAVRDQKRPEYVKRLEFEINTILKMGFPGYFLIVGDFINWAKNNGC 380

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI 
Sbjct: 381  PVGPGRGSGAGSLVAYSLKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVID 440

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YVKD+YGKDAVSQIVTFGTMAA+ AIRDVGRVLD  Y FCD ISKLIP KPG+ IT+  A
Sbjct: 441  YVKDKYGKDAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQHITIEQA 500

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++EP LAER + EE+V+ L+ LA+++EG+ RNVGMHAGGVLIAPSKL +FCPLY Q G 
Sbjct: 501  KEQEPVLAERERKEEDVQTLLALAQKLEGLTRNVGMHAGGVLIAPSKLTDFCPLYAQPGS 560

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
               +SQ+DKDD+E IGL+KFDFLGL TL+IL+    FI   +    +F    LPLND+  
Sbjct: 561  DSAVSQFDKDDVEAIGLVKFDFLGLATLTILEIAREFIIARHPAQKDFKFEDLPLNDRKV 620

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG- 657
            Y L  +  T AVFQ ES GM+ MLK+AKPD  E++IA+ +LYRPGPM+LI  +  RK G 
Sbjct: 621  YELFGRGQTEAVFQFESIGMQRMLKDAKPDRLEDLIAMNALYRPGPMELIPTYIARKQGK 680

Query: 658  EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
            E   YPDPR K +L ETYGIMVYQEQVMQ AQILGGYSLG ADLLRRA+GKKK  EM   
Sbjct: 681  EVPEYPDPRVKAILEETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAMGKKKKEEMDAQ 740

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            R+ F+ GA + GLS+ KA+E+F+ +EKFAGYGFNKSH+ AYALL+Y+TA+LK HY++ F 
Sbjct: 741  REIFRKGAGEGGLSEEKADEVFDLMEKFAGYGFNKSHSAAYALLAYHTAWLKVHYTAEFF 800

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
            AAN+++ MDDT+K+KIL  DA K  G+    P+IN   Y F PI  S      +RYGLGA
Sbjct: 801  AANMTVEMDDTDKLKILFGDAQK-MGIQFESPDINRGDYRFEPISAS-----SVRYGLGA 854

Query: 838  IKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            IKGTG+  I AIV  RK G  FT+++DF  R+D+  +N+R + +LI  GAFD     R  
Sbjct: 855  IKGTGQQAIAAIVAARKEGGPFTSIYDFCVRVDRSRLNKRTVEALIKGGAFDNLQLNRAS 914

Query: 897  LVASIDVALKNAEKTKKFINQLSLFKNDDNNNLK-EYLNYVKVPSWSKKQELIEEKKVLG 955
            L+AS+D A + A  T+   NQ  LF   D++    +    V+   +  K  L++EK  +G
Sbjct: 915  LLASVDRAFEFAAATEANANQGGLFDMSDSHAASTQEPPLVEAMPFGVKARLVQEKTAIG 974

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDN 1014
            F LS H+F   ETE+RQF    + +L  +     ++ I+++L++    RGK++I  +DD 
Sbjct: 975  FYLSGHLFDEVETEVRQFAKRRIDDLIDSREPQLLAAILSDLRIINGNRGKLIIFKLDDK 1034

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKV--LEDRFLKNIRINAEKIFDINVARILY 1072
            ++ +E  ++   +  N+N+LK++EL+IV G +    +RF +  ++   +++D+  AR  +
Sbjct: 1035 TDVLEASVDEATFNANRNLLKDDELVIVQGTLQGASERFGRRFKVT--QVWDLETARCKF 1092

Query: 1073 GKKFSVMFN 1081
            GK   V  N
Sbjct: 1093 GKYLRVAVN 1101


>gi|114330405|ref|YP_746627.1| DNA polymerase III subunit alpha [Nitrosomonas eutropha C91]
 gi|114307419|gb|ABI58662.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91]
          Length = 1166

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1095 (49%), Positives = 758/1095 (69%), Gaps = 27/1095 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLRLHSEYS++DG++RI + +  A +   PALA+TDLSNLFG++KFY+ A   GIK
Sbjct: 5    PVFVHLRLHSEYSVVDGIVRIEEAVAKARDTGMPALALTDLSNLFGLVKFYQHACKAGIK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWI+NE +  +P RLLLL ++ +GYL L  LLS+AY EN+  GRAE++ +W  +
Sbjct: 65   PIAGCDVWISNENDADRPFRLLLLCQSFSGYLLLSRLLSRAYRENMQRGRAELKKDWFRE 124

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLIALSG   G++   +     D A   A+ W+ +FP+ FY+EIQR  +P+    
Sbjct: 125  GAGTEGLIALSGGEQGEVERLLLA-DPDAATTAAQEWAALFPERFYLEIQRCGRPDEEVT 183

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
                + + S + LP+VATHP+QF++  +F AHE R CIA+G +L + +R ++FT++Q FK
Sbjct: 184  NHAMLELVSGLKLPVVATHPVQFMQPEDFRAHEARVCIAQGYVLGDRRRPREFTEQQYFK 243

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T +EM +LF D+P A+ N++EIA+RC+L LE G  +LP FPTP  I++  +L  +++ GL
Sbjct: 244  TAAEMSELFGDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGISVEQYLRDRAQAGL 303

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
              R+  L+ +      +   Y+ RL FE+ETII+M F+GYFLIVSDFI WAK + +PVGP
Sbjct: 304  VVRMTQLFPEAAQRDEKYPAYQARLDFEVETIIQMGFAGYFLIVSDFISWAKQHDVPVGP 363

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + R++VI+YV+D
Sbjct: 364  GRGSGAGSLVAYSLDITDLDPLRYDLLFERFLNPERVSMPDFDIDFCQDRREQVIEYVRD 423

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYG ++V+QI TFGTMAAK  +RDVGRVLDL Y+F D ++KL+PF+ G  +TL  A + E
Sbjct: 424  RYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKLVPFELG--MTLHKAREIE 481

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L +R + EE+VR L+ELA+++EG+ RNVGMHAGGVLIAP K+ +FCP+Y  +    ++
Sbjct: 482  PLLNQRAEAEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPGKITDFCPVYCADSGDAVV 541

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI-------------NTKTTNFSLN 589
            SQYDKDD+E+IGL+KFDFLGL TL+ILD+ +  I++              + +   FSL 
Sbjct: 542  SQYDKDDVEKIGLVKFDFLGLRTLTILDRAVADIRQYQLASLGGKDAGEQSVEENRFSLG 601

Query: 590  KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIK 649
             + L D  T+ L+ K NTV +FQ ES+GMK++L++AKPD FE++IAL++LYRPGPMDLI 
Sbjct: 602  DISLEDAATFALMAKGNTVGIFQFESRGMKDLLQKAKPDRFEDLIALVALYRPGPMDLIP 661

Query: 650  NFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            +F  RKHG+   Y DPR + +L  TYGIM+YQEQVMQIAQ++GGYSLG ADLLRRA+GKK
Sbjct: 662  DFIERKHGKRVEYLDPRLQPILGPTYGIMIYQEQVMQIAQVIGGYSLGGADLLRRAMGKK 721

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  GAI+ G+ +  A  +F+ +EKFAGYGFNKSHA AYAL++Y TAYLK
Sbjct: 722  KVEEMAQQRAVFVEGAIRNGMMEADAVTLFSLMEKFAGYGFNKSHAAAYALIAYQTAYLK 781

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA +S  MDDT+K+ +  +D  K  G++ILPP+IN S YYF P+       K
Sbjct: 782  AHYPAEFMAACMSSDMDDTDKVNVFYEDC-KLNGIAILPPDINQSAYYFVPV-----DRK 835

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             IRYGLGAIKGTG++ I AIV  R+ G  FT LFDF +R+D++ +NRR I +LI +GAFD
Sbjct: 836  TIRYGLGAIKGTGEAAISAIVRAREQGIAFTGLFDFCQRVDRRIVNRRTIEALIRAGAFD 895

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
                 R  L+AS+ +AL+ AE      +Q+SLF  DDN +L +     ++  W +K++L 
Sbjct: 896  TVEANRAALMASVGMALEYAEHCSLTASQVSLF--DDNADLLQQPVITEIAQWPEKEKLQ 953

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKIL 1007
             EK  LGF LS H +  Y  E+ +FIP  L  + P      ++G+I  ++ + + RGK+ 
Sbjct: 954  YEKMSLGFYLSGHPYDSYAKELSRFIPARLGRIAPGREPQLIAGVIYAIRTQMSRRGKMA 1013

Query: 1008 IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL-KNIRINAEKIFDIN 1066
            I+ +DD    VE+++ + L   N   LK ++LL+VS  V          RI A+++FD  
Sbjct: 1014 IVTLDDGMARVELVVYSDLLSTNSQFLKADQLLVVSAVVSHGNGENAEKRIVAKEVFDYA 1073

Query: 1067 VARILYGKKFSVMFN 1081
             AR ++ +K  ++ +
Sbjct: 1074 TARSMHARKLRIVID 1088


>gi|333914938|ref|YP_004488670.1| DNA polymerase III subunit alpha [Delftia sp. Cs1-4]
 gi|333745138|gb|AEF90315.1| DNA polymerase III, alpha subunit [Delftia sp. Cs1-4]
          Length = 1177

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1102 (49%), Positives = 752/1102 (68%), Gaps = 37/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S++DG  RIN +++AAA D Q ALA+TD +NLFG +KFY+    KG+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 61

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G ++ I  E      SR+++LV++  GY  L ELL++ +  N+  G+A     WL++  
Sbjct: 62   LGAEIQIEGE-NGAAVSRIIVLVQSPLGYHNLSELLARGWTRNVVKGQAVHTWAWLQE-- 118

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLI L+GA  G +G A+  G    A   A+R + +FP  F+IE+QR  + +    + 
Sbjct: 119  LGEGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLAGMFPHRFFIELQRAGRQDDEAHVL 178

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +NLP+VATHPIQF    ++ +HE R CIAEGEIL+N KR+++FT++Q+FKT 
Sbjct: 179  AAVQLAERLNLPVVATHPIQFFGPDDYESHEARVCIAEGEILANPKRVRRFTRDQHFKTA 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            ++M  LF DIPSAI NT+EIA+RC+L L  GKP+LP FP P  + +++F  S+S +GL+ 
Sbjct: 239  AQMQALFADIPSAIANTVEIARRCSLTLVLGKPQLPNFPVPDGMTMDEFFRSESFNGLED 298

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL +LY DP   + ++ RY +RL+FEI TI+KM F GYFLIV DFI+WAK N  PVGPGR
Sbjct: 299  RLTHLYPDPAKREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIKWAKLNGCPVGPGR 358

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY L ITD+DPL YNLLFERFLNP R+SMPDFD+DFC   RDRVI YVK  Y
Sbjct: 359  GSGAGSLVAYVLKITDLDPLEYNLLFERFLNPERVSMPDFDVDFCQANRDRVIDYVKQLY 418

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL--------- 475
            G+DAVSQI TFGTMAA+ AIRDVGRVLD+ Y+FCD ISKLIP KPG  +TL         
Sbjct: 419  GRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGLHVTLKYPPNPKKE 478

Query: 476  ----SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
                + AI+ EP LAERI+ EE+V+ LIE+A+++EG+ RN+GMHAGGV+IAP KL +FCP
Sbjct: 479  GDKYTYAIEAEPMLAERIEKEEDVKTLIEMAQKLEGMTRNIGMHAGGVVIAPGKLADFCP 538

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            LY+Q G    ++ YDKDD+E +GL+KFDFLGL TL+IL+    FI K +    NF+   +
Sbjct: 539  LYQQPGSDSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIIKRHKGQENFAFENI 598

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+D  TY+L  +  T AVFQ ES+GM+ ML++AKP   E++IAL +LYRPGPMDLI +F
Sbjct: 599  PLDDARTYHLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNALYRPGPMDLIPSF 658

Query: 652  CRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG E   YP P  + VL+ETYGIMVYQEQVMQ AQ+LGGYSLG ADLLRRA+GKKK
Sbjct: 659  VARKHGKEVVEYPHPLVQQVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM+ HR  F+ GA K G+S+ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+TA+LK 
Sbjct: 719  VEEMVMHRGIFREGAAKQGISEDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTAWLKV 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ F   N+++ MD+T+K+K+L +DA+K  G+S  PP++N   Y F P+ +     K 
Sbjct: 779  HYTAEFYCGNMTVEMDNTDKLKVLYEDALKM-GISFEPPDVNRGMYRFEPVTD-----KV 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF----------GFFTNLFDFTKRIDKKYINRRIINS 880
            IRYGLGAIKGTG+  IEAIV  R+           G F +L DF  R+D+  +N+R + +
Sbjct: 833  IRYGLGAIKGTGQQAIEAIVAAREGRGVGPRGADKGPFKSLADFCVRVDRTRLNKRTLEA 892

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK---NDDNNNLKEYLNYVK 937
            LI  GAFD     R  LVASID A +   KT    NQ  LF    +D   +  +    V+
Sbjct: 893  LIKGGAFDAIELNRASLVASIDHAFEFGNKTLANANQGGLFDMMGDDAVGSSTQEPPLVE 952

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITEL 996
               W  K+ L +EK  +GF LS H+F   E E+R+F+   L+EL+ +    T++GII++ 
Sbjct: 953  ALPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPLAELRDSREPQTLAGIISDF 1012

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +     RG++ +  IDD S  +E  ++       + +LK++E ++++G++  D F   +R
Sbjct: 1013 RAINGQRGRLGLFKIDDGSGVIEASVDENTLNTYRELLKDDEFVVITGRLQLDHFSGGLR 1072

Query: 1057 INAEKIFDINVARILYGKKFSV 1078
            + A++++++  AR  + +   V
Sbjct: 1073 MKAQQLWNLADARCRFARYLQV 1094


>gi|313201481|ref|YP_004040139.1| DNA polymerase III subunit alpha [Methylovorus sp. MP688]
 gi|312440797|gb|ADQ84903.1| DNA polymerase III, alpha subunit [Methylovorus sp. MP688]
          Length = 1133

 Score = 1118 bits (2893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/1128 (50%), Positives = 786/1128 (69%), Gaps = 24/1128 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DG +RI D ++AAA D  PALA+TDLSNLFG +KFYKSA  KG+KP++GCD+W+ NE 
Sbjct: 1    MVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLKPVLGCDLWLENET 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               +P RLLLL + + GYL+LCELLS+AY+EN + GRAEI+ +WL +    +GLI LSGA
Sbjct: 61   NRDQPYRLLLLCQTHAGYLKLCELLSRAYLENQHRGRAEIKRQWLVEAG-GEGLIMLSGA 119

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              GD+G A+  G    A   A++W+ +FP+ FYIE+QR       F I + + +A  ++L
Sbjct: 120  MAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQRAGHAQQEFYISRALALAGELDL 179

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VATHP+QF++  +F AHE R CIAEG +L++ +R K FT EQ FKTQ+EM  LF D+P
Sbjct: 180  PVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPKHFTPEQFFKTQAEMATLFADVP 239

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ N++EIAKRCNL L  GK  LP+FPTP   +++++L+ ++K GL+KRL  LY D  +
Sbjct: 240  QALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESLDEYLVVQAKLGLEKRLQVLYPDEAV 299

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
               ++  Y  RL+FE   II+M F GYFLIV+DFI WAKNN +PVGPGRGSGA S+VAYS
Sbjct: 300  RDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSVVAYS 359

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI YVK +YG  +VSQI TF
Sbjct: 360  LGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQEGRDRVIDYVKHKYGLASVSQIATF 419

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVLDL ++F D I+KLIP + G  ITLS+A+++EPQL ER + EEEV
Sbjct: 420  GTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNELG--ITLSDALEKEPQLKERREQEEEV 477

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
             +L+ELA ++EG+ RN+GMHAGGVLI+P K+ +F P+Y Q+    ++SQYDKDD+E +GL
Sbjct: 478  NELLELALRLEGLTRNIGMHAGGVLISPGKISDFSPIYCQQNGESLVSQYDKDDVEAVGL 537

Query: 556  IKFDFLGLTTLSILDKTI--YFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+IL   +    +++   +        LP+NDK TY LLK ANT AVFQL
Sbjct: 538  VKFDFLGLRTLTILAMALENANVQRALKELPPLDFETLPINDKPTYQLLKSANTTAVFQL 597

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY-FNYPDPRTKDVLS 672
            ES+GMK+MLK+AKPD FE+IIAL++LYRPGPMDLI +FCRRKHG+    YP P T+ +L 
Sbjct: 598  ESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCRRKHGQQRVEYPHPATEPILK 657

Query: 673  ETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSK 732
            ETYGIMVYQEQVMQIAQ++ GYSLG ADLLRRA+GKKK  EM   R  F  GA+K G  +
Sbjct: 658  ETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKKEEMDAQRAVFVEGAVKNGTPE 717

Query: 733  HKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIK 792
             +A E+F+ +EKFA YGFNKSHA AYAL++Y+TAYLK HY + F+AA +S  M++T+ + 
Sbjct: 718  KQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAYLKAHYPAAFLAATMSADMNNTDSVH 777

Query: 793  ILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTE 852
            I   D     G+ +L P+IN S++ F PI  SD   K++ YGLGA+KGTG + IE I+  
Sbjct: 778  IFYDDCAAN-GVEVLAPDINQSEFRFKPI--SD---KQVLYGLGAVKGTGWAAIEVILAA 831

Query: 853  RKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT 911
            R+  G F +LFDF +R+D + +NRR+I SLI +GAFD     R  L+A + +A+  AE++
Sbjct: 832  REAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEPNRAALLAGVSLAISAAEQS 891

Query: 912  KKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIR 971
                 Q SLF  + ++++   L   KV +WS++++L +EK  LGF  S H +  Y+ E+ 
Sbjct: 892  GAASGQNSLF-GEMSDSVAHTLP--KVNAWSEQEKLQQEKSALGFYFSGHPYEGYKRELA 948

Query: 972  QFIPIYLSELKPT-YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKN 1030
             F+   L  LKP      ++G++  ++++ T RGK+ I+ +DD ++ +E+++ N+L  ++
Sbjct: 949  TFVRTTLGNLKPQDQPQLLAGVVMGIRIRMTQRGKMAIVTLDDATSRIEIVVGNELLNQS 1008

Query: 1031 KNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILK 1090
            +++LKE+ L+IV G+V  D F   +R+NA K++D+  AR        +  N   +   L+
Sbjct: 1009 QHLLKEDALVIVEGRVSNDDFSGGLRVNARKVYDLAAARSANASLLKISCNGQADAGRLR 1068

Query: 1091 KILLRFKCKNGLPFVLYYCI------NKSIKYEMKFPLNYKVQPIDDL 1132
            +IL  + C+ G      +C       N S + E+     ++V+  D+L
Sbjct: 1069 EILAPY-CRQGGEEDRRHCAVKIEYHNGSARVELMLGEQWRVELHDEL 1115


>gi|451822911|ref|YP_007459185.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            desouzaii TCC079E]
 gi|451775711|gb|AGF46752.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            desouzaii TCC079E]
          Length = 1155

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1079 (52%), Positives = 751/1079 (69%), Gaps = 19/1079 (1%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
             F+HLR+HSEYSI+DGL++IND+++      QPA+A+TDLSNLFG +KFYK + ++GIKP
Sbjct: 10   SFVHLRVHSEYSIVDGLIKINDLVDGVIKLKQPAVALTDLSNLFGALKFYKYSRSRGIKP 69

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            +IGCDVW++N+ +  KP R+L+LV+NN GYL LC L++K+Y+ N   GR EIR EWL   
Sbjct: 70   VIGCDVWLSNDEDKSKPHRILILVRNNAGYLNLCNLITKSYLTNQTDGRVEIRKEWLVS- 128

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
              Q+GLI LSG   GD+G A+++GR D+A +  ++W  +FPD++YIEIQR         I
Sbjct: 129  --QEGLIILSGGIHGDVGHALRSGRKDLALSLIKQWKFMFPDSYYIEIQRSGLSEEEEYI 186

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q  + I+S+ N+PIVATHP++FL+K+ F +HEVR CIA+G+ L++  +   FT++Q   +
Sbjct: 187  QLVVPISSDENIPIVATHPVEFLEKSHFKSHEVRVCIADGKHLTDVNKNHFFTEKQYLLS 246

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI LF DIPSA+ N+IEIAKRCN+ L+ GKP LP F    +I++  +L   S  GL 
Sbjct: 247  SEEMIDLFADIPSALSNSIEIAKRCNINLQIGKPMLPNFEVRDDISLEFYLKQLSSSGLT 306

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            K+L ++Y  PE     K  Y +RL  E +TII+M F+GYFLIV DFI WAKNN +PVGPG
Sbjct: 307  KKLNSIY--PESNDEFKSIYYERLDKECKTIIQMGFAGYFLIVQDFINWAKNNGVPVGPG 364

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAYSL ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFCP+ RDRVI YVK++
Sbjct: 365  RGSGAGSLVAYSLGITDLDPIKYDLLFERFLNPERVSMPDFDIDFCPDNRDRVIDYVKNK 424

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG D+VSQIVTFGT  AK  IRDVGRVL L YS CDS+SKLIPF P    +L   I  EP
Sbjct: 425  YGSDSVSQIVTFGTFGAKAVIRDVGRVLGLPYSLCDSLSKLIPFNPVDQWSLERVINSEP 484

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGII 542
                R   EEEV+ L++LA  +EG++RNVGMHAGGVLIAP KL +FCPLY Q G  T I+
Sbjct: 485  SFKSRYNQEEEVKNLVDLAMPLEGLVRNVGMHAGGVLIAPGKLTDFCPLYCQPGQETSIV 544

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQ+DKDD+E  GL+KFDFLGL  L++LD  + +++  N    +F L  L L+DK TYNLL
Sbjct: 545  SQFDKDDVELAGLVKFDFLGLRNLTVLDWAVRYVRSFNKDEKDFDLANLELDDKLTYNLL 604

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EY 659
               NT AVFQLES+GMK++LK  KP+ FE+IIA+++LYRPGP++  ++ +F  RKHG   
Sbjct: 605  CNGNTTAVFQLESKGMKDLLKRLKPNTFEDIIAVLALYRPGPLESGMVNDFVNRKHGLST 664

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
             NY  P  + +L  TYG++VYQEQVM I+Q++GGYSLG ADLLRRA+GKK   EM  HR 
Sbjct: 665  INYFHPILESILKSTYGVIVYQEQVMLISQVVGGYSLGGADLLRRAMGKKDPEEMSRHRV 724

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GA+  G S H A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY S F AA
Sbjct: 725  LFEKGAVNKGYSPHLAIKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAHYPSEFFAA 784

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
            ++S  MDDT+KIK+L  DA K   + ILPP+INLS + F PI         IRYGLGAIK
Sbjct: 785  SMSSDMDDTDKIKVLFNDA-KNNSIDILPPDINLSNFRFEPI-----NSHSIRYGLGAIK 838

Query: 840  GTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            G GKS IE IV  R+  G F +LFDF  R   K INRR I SL+ SGAFD  +  R  L 
Sbjct: 839  GVGKSAIEEIVKIRELAGNFKSLFDFCYRA-SKIINRRSIESLVKSGAFDSLDPNRAFLF 897

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            +S+D+A+  A++ ++  NQ SLF + +   +   +    V +W   ++LIEEK  LG+  
Sbjct: 898  SSLDIAINAADQKQRNRNQSSLFDSAEEAVVDVSIKD-SVINWDLHKKLIEEKSALGYYF 956

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSNS 1017
            S+H+F  +  EIR+ +P  L +++P      + G++  ++   T RGKI+I ++DD +  
Sbjct: 957  SDHLFNCWGKEIRRAMPKKLIDVEPHAKAQFICGVLVSIRSVITRRGKIVIALLDDATKQ 1016

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
            +EV I  ++Y + ++ LKE+ L+ + G V +D +  NIRI AEK+ D+   RIL  K  
Sbjct: 1017 LEVAIYAEIYSEYRDFLKEDNLIAIKGIVSKDDYSGNIRIVAEKVLDLQAIRILMAKSL 1075


>gi|74316876|ref|YP_314616.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC
            25259]
 gi|74056371|gb|AAZ96811.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC
            25259]
          Length = 1141

 Score = 1114 bits (2882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1137 (48%), Positives = 777/1137 (68%), Gaps = 26/1137 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLRLH+EYSI+DGL+R+++ ++ A     PAL ++DLSN FG +KFY++A   G+K
Sbjct: 4    PRFIHLRLHTEYSIVDGLVRVDEAVKRAREIAMPALGVSDLSNTFGWVKFYRAARGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVW++N  +  +PSRLLLLV++  GY +LCELL++AY EN++ GRAEI   WL +
Sbjct: 64   PIFGCDVWVSNATDRNRPSRLLLLVQHREGYRRLCELLTRAYQENLHRGRAEIDPSWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            N    GL+ALSG   G++  A+ + +  +A   A  W+ +FP  +Y+E+QRF Q +    
Sbjct: 124  N--NGGLLALSGGDGGNVAQAIIDDKPAVARAAAEAWAALFPGRYYLELQRFGQAHTERL 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   ++I + + LP VATHPIQFL   +F AHE R CIAEG +L + +R + FT EQ FK
Sbjct: 182  IDGLLDIGAELGLPAVATHPIQFLAADDFKAHEARVCIAEGMMLGDPRRPRPFTAEQYFK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T  EM  LF D+P A+ N++EIAKRCNL LE GK KLP FPTP  + ++D++  ++  GL
Sbjct: 242  TPDEMAALFADLPEALANSVEIAKRCNLTLELGKSKLPDFPTPDGMGLDDYMRQRAYEGL 301

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             +R+ +LY D      ++  Y +RL+FE+ TII+M F GYFLIV+DFI WAKNN +PVGP
Sbjct: 302  AERMAHLYPDEAERAAKRPEYTERLEFELGTIIQMGFPGYFLIVADFINWAKNNGVPVGP 361

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFDIDFC +GRDRVIQYVKD
Sbjct: 362  GRGSGAGSLVAYCLRITDLDPLAYDLLFERFLNPERVSMPDFDIDFCQDGRDRVIQYVKD 421

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG  AVSQI TFGTMAAK  +RDVGRVLDL Y F D   KL+P + G  I+L+ A ++E
Sbjct: 422  KYGHAAVSQIATFGTMAAKAVLRDVGRVLDLPYLFVDKFVKLVPNELG--ISLAEAREKE 479

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQ+ ER +NEEE+ +L+ LA+++EGI RNVGMHAGGVLIAP KL +FCPLY+ EG    +
Sbjct: 480  PQIDERARNEEELAELLPLAEKLEGITRNVGMHAGGVLIAPGKLTDFCPLYQAEGSDAAV 539

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQ+DKDD+E IGL+KFDFLGL TL+IL + + F+++ +    +F L  LPL+D   Y L 
Sbjct: 540  SQFDKDDVEAIGLVKFDFLGLRTLTILAEAVRFVQR-HEDRKDFRLEDLPLDDPAVYRLF 598

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHG--- 657
               NT AVFQ ES+  K++ K  K D FE+IIAL++L RPGP+   ++ +F  RK G   
Sbjct: 599  ADGNTTAVFQSESRSAKDLEKRLKGDCFEDIIALMALNRPGPLGSGMVDDFIARKQGKQK 658

Query: 658  -EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIE 716
             EYF+   P  + VL  TYGI+VYQEQVM +AQIL GYSLG AD+LRRA+GKKK  EM +
Sbjct: 659  PEYFH---PDLEPVLKSTYGIIVYQEQVMLVAQILAGYSLGGADMLRRAMGKKKPEEMAK 715

Query: 717  HRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFF 776
             R  F  GA K G+    A  +F+ +EKFA YGFNKSH+ AYAL++Y+TA+LK +Y + F
Sbjct: 716  QRAIFLEGADKRGVDVKIAERLFDLMEKFAEYGFNKSHSAAYALVAYHTAWLKAYYPAEF 775

Query: 777  MAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLG 836
            MAA +S  M DT+K++I  +D  +  GL++LPP+INLS Y F P+  ++     IRYGLG
Sbjct: 776  MAATMSSEMSDTDKVRIFYED-CRANGLTMLPPDINLSGYRFDPVSRTE-----IRYGLG 829

Query: 837  AIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            AIKG+G++ I AIV ER   G +  LFD  +R+DK+Y+NRR++ +L+ +GAFD  ++ R 
Sbjct: 830  AIKGSGEAAIGAIVAERGANGPYKGLFDLARRVDKRYLNRRVLEALVKAGAFDSLSDHRA 889

Query: 896  MLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
             L+ASI VAL+ A++  +   Q+ LF        +   + V VP W ++++L++EK  LG
Sbjct: 890  SLMASIGVALETADRAARSGGQVGLFGEVLEGGGE---DLVDVPYWPEQEKLLQEKSALG 946

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKILIIVIDDN 1014
            +  S H F  Y  E+  F    L  L+P      ++G+   L+ + T RGK+LI+++DD 
Sbjct: 947  YFFSGHPFTAYLAEVSGFAKRRLDSLEPAREPVMLAGVAVSLRTQMTRRGKMLILLLDDA 1006

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            +  VEV+I N+LYE+++++LK++ LL++ GKV  D +   +R+ AE+I+D+  AR  + +
Sbjct: 1007 TAQVEVVIFNELYEQSRHLLKDDALLVIEGKVSRDDYSGGVRVTAERIYDLAGARTRFAQ 1066

Query: 1075 KFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDD 1131
               ++ N   +   L ++L  +  + G   V     N + +  ++    ++V+ +DD
Sbjct: 1067 GLRLVCNGQSSGRALSELLAPYAMEEGGCPVWIEYHNHNARCRVRLGERWRVR-LDD 1122


>gi|451812057|ref|YP_007448511.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            galatii TCC219]
 gi|451777959|gb|AGF48907.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            galatii TCC219]
          Length = 1162

 Score = 1112 bits (2877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/1104 (52%), Positives = 762/1104 (69%), Gaps = 19/1104 (1%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
             F+HLR+HSE+SI+DG++RI ++I    +  QPA+A+TDLSN+FGIIKFYK+A   GIKP
Sbjct: 7    SFVHLRVHSEFSIVDGIVRIEELINLVKDSNQPAVALTDLSNVFGIIKFYKTARASGIKP 66

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IIGCDVW+TN+    +P R+LLLV N  GYL LC LL+K+++ N   GRAE+R EWL  N
Sbjct: 67   IIGCDVWLTNDKNRDRPFRILLLVCNQEGYLNLCSLLTKSFLCNQYNGRAELRKEWLSGN 126

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               +GLI LSG  LGDI  A++     +A + A +W  +FPD+FYIE+QR   P  +   
Sbjct: 127  ---NGLIVLSGGPLGDIAYALEINNYALALDLANQWKLMFPDSFYIELQRVGFPGEDNYN 183

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
               + IAS +NLP+VATHPIQFL+ +EF +HEVR CIAEG  LS++KRI +F KEQ F  
Sbjct: 184  HAALEIASKLNLPVVATHPIQFLRNSEFQSHEVRVCIAEGSHLSDSKRISRFRKEQYFLI 243

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
            Q +M  LF DIPSAI NTIEIAKRCNL L  G P LPKF      +++D+L+S ++ GLK
Sbjct: 244  QKKMFDLFSDIPSAIFNTIEIAKRCNLTLRLGVPNLPKFEIDSRYSLSDYLVSMAEAGLK 303

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            KRL  L  D +I    K  Y  RL+ E  TI +M F+GYFLIV DFI W K N +PVGPG
Sbjct: 304  KRLDFLGID-KINDDSKNAYYNRLREECVTINQMGFAGYFLIVQDFINWGKKNGVPVGPG 362

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+L ITDI+P+ Y+LLFERFLNP R+SMPDFDIDFC + RDRVI YVK +
Sbjct: 363  RGSGAGSLVAYALGITDINPMDYDLLFERFLNPERVSMPDFDIDFCQDNRDRVIDYVKSK 422

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG DAVSQI TFGT  AK  IRDVGRVL + YS CD +SKLIPF   +  TLS  +  + 
Sbjct: 423  YGYDAVSQIATFGTFGAKAVIRDVGRVLGMPYSLCDGLSKLIPFSVSEQWTLSKVLDSDA 482

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGII 542
               +R + EEEVR LI++AK +EG+ RNVGMHAGGVLIAP KL +FCPLY Q G    ++
Sbjct: 483  VFKDRYEKEEEVRTLIDIAKPLEGLARNVGMHAGGVLIAPGKLTDFCPLYCQPGQENSVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQ+DKDD+E  GL+KFDFLGL  L++LD ++ ++++ N    NFS+  LPL+DK TY+LL
Sbjct: 543  SQFDKDDVESSGLVKFDFLGLRNLTVLDWSVKYVRQCNKGMDNFSIMSLPLDDKGTYDLL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EY 659
             K NTVAVFQLES+GM+ +LK  KP  FE+IIA+++LYRPGP++  ++ +F  RKHG   
Sbjct: 603  SKGNTVAVFQLESKGMRELLKRLKPSNFEDIIAVLALYRPGPLESGMVNDFVNRKHGLSS 662

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
             NY     + VL  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKK   EM +HR 
Sbjct: 663  INYFHEDLESVLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKDPEEMSKHRV 722

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GAI  G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LKTH+ + F AA
Sbjct: 723  IFEKGAISNGYDSDLAIKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKTHHPAEFFAA 782

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE-SDGKHK-KIRYGLGA 837
             +S  MDDT+KI+ +  DA K   + ILPP+INLS++ F P+I+ SDG +K  IRYGLGA
Sbjct: 783  TMSSDMDDTDKIQSIFHDAKKN-NIKILPPDINLSEFRFNPVIDSSDGNNKIAIRYGLGA 841

Query: 838  IKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            IKGTGKS IE IV  R   G F+++FDF  R+  K +NRR I SLI SGAFD  N  R  
Sbjct: 842  IKGTGKSAIEDIVKSRIDKGPFSDIFDFCYRM-FKILNRRAIESLIKSGAFDSTNSNRSE 900

Query: 897  LVASIDVALKNAEKTKKFINQLSLFKND---DNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
            ++AS++ AL+ AE     INQ SLF++D   +  +L++  N   +  W    +L EEK  
Sbjct: 901  VLASLNTALEIAEHRNTNINQSSLFEDDYEKEMPSLQQKKN--NITEWDLLTKLTEEKTA 958

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVID 1012
            +G+  S H+F  +  E+RQ +P  LS+++P+     V GII  +K+ TT RGK++I +ID
Sbjct: 959  MGYHFSGHLFEYWRDEVRQIVPNTLSKIRPSKQLQWVCGIIISIKIITTRRGKMVIALID 1018

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  VE++I    YEKNKN L+E+ L+     V +D +  N+R   E+I+ IN  R   
Sbjct: 1019 DETAQVEIVIYTDFYEKNKNDLREDNLIAAKVAVSDDAYSNNLRAIVEQIYSINDIRTYM 1078

Query: 1073 GKKFSVMFNRTFNISILKKILLRF 1096
             +   +  +   ++ +L+ +L  F
Sbjct: 1079 SRAIRISTDSEIDLKLLRDLLENF 1102


>gi|319944370|ref|ZP_08018644.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
 gi|319742331|gb|EFV94744.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
          Length = 1203

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1169 (46%), Positives = 777/1169 (66%), Gaps = 36/1169 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+ SEYS++D ++R+++ + AA  D Q ALA++D SNLFG +KFYK A  KG++
Sbjct: 43   PGFVHLRMRSEYSVVDSIVRLDEAVAAAVADGQMALALSDASNLFGWVKFYKQASGKGLQ 102

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI   DVWITN     +P RLLL+  NN GY +LCELLS+A++EN   G AE+  EWL  
Sbjct: 103  PICAADVWITNAENRDRPYRLLLIAANNAGYRRLCELLSRAWLENEYKGHAELLPEWL-T 161

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +   GLIALSGA  G++G  +  G +  A   A+ W+  FPD FY+E+QR   P     
Sbjct: 162  AETTGGLIALSGAGGGEVGQFLLAGNHARAVEAAQHWAAAFPDAFYLEVQRDGTPEAESC 221

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             +    +A  ++LP+VATHPIQFL++ +F AHE R CIAEGE+L++ KR+++F   Q F+
Sbjct: 222  TRATARLAVELDLPLVATHPIQFLREEDFRAHEARVCIAEGEVLADPKRVRRFQPTQYFR 281

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T++EM+ LF D+P+A+ N++EIA+RC + L  G P+LP +PTP+ ++I ++L+ +++ GL
Sbjct: 282  TRAEMMALFADLPAALANSVEIARRCAVTLRLGNPQLPIYPTPEGVSIEEYLVHQAEDGL 341

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL  LY DPE+   +   Y+ RL+ E ETIIKM F GYFLIV+DFI WAK N +PVGP
Sbjct: 342  AKRLEKLYPDPEVRAQKAPEYEARLKRECETIIKMGFPGYFLIVADFIVWAKQNGVPVGP 401

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVA+SL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC + R +VI+YV+ 
Sbjct: 402  GRGSGAGSLVAFSLGITDLDPLPYALLFERFLNPERVSMPDFDIDFCQDNRGKVIEYVRR 461

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMA+K  IRD GRVLD+ Y+FCD +SKLIP +  K ++L  A+K E
Sbjct: 462  KYGYDAVSQIATFGTMASKAVIRDAGRVLDMPYNFCDQLSKLIPIEQAKPLSLDKALKAE 521

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAER+ NEEEV +L  LA+ +E + RN+GMHAGGVLIAP KL +FCPLY+  G   ++
Sbjct: 522  PQLAERLANEEEVAELFALARPLEDMTRNIGMHAGGVLIAPGKLTDFCPLYRAPGTDSVV 581

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            SQYDKDD+E +GL+KFDFLGL  L+I+D  + ++  ++         L+ L  +D+  Y 
Sbjct: 582  SQYDKDDVEAVGLVKFDFLGLRNLTIIDLAVRYVNERRAREGQEPVDLDNLGFDDQAAYQ 641

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHGE 658
            +L+  NTVA+FQ+ES GMK +L++ +PD FE+IIA+++LYRPGP+   ++ +F  RK GE
Sbjct: 642  ILRDGNTVAIFQVESDGMKKLLRKLQPDRFEDIIAVLALYRPGPLGSGMVDDFILRKRGE 701

Query: 659  -YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
               +Y  P  KD L  TYG++VYQEQVMQI+QI+ GY+LG ADLLRRA+GKKK  EM + 
Sbjct: 702  QAIDYFHPDLKDCLEPTYGVIVYQEQVMQISQIIAGYTLGGADLLRRAMGKKKAEEMAKQ 761

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            RK F  GA   G     A+++F+ +EKFA YGFNKSH  AYA+++Y TA+LK HY + FM
Sbjct: 762  RKTFMEGAAAKGQDPDLASQLFDLMEKFAEYGFNKSHTAAYAVVTYQTAWLKAHYPAEFM 821

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
            AA LS  MDDT+K++I V+DA +   + + PP+IN S Y F P        + IRYGLG 
Sbjct: 822  AATLSSDMDDTDKVQIFVRDA-QANQVEVQPPDINASAYRFEP-----AAPRAIRYGLGG 875

Query: 838  IKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            +KG G+S IE +V  R+ G  F +LFDF +RID+K INRR I +L+ +GAFD  +  R  
Sbjct: 876  VKGVGQSAIENVVAAREAGGPFIDLFDFCERIDRKLINRRTIEALVRAGAFDRLDPDRAR 935

Query: 897  LVASIDVALKNAEK--TKKFINQLSLFKN-----DDNNNLKEYLNYVKVPSWSKKQELIE 949
            L+A++  A++ AE+   ++   Q  LF +      D    +E+L   +   W  +Q L+E
Sbjct: 936  LLANVPQAMEAAEQKAREQAAGQGGLFDDAFFGGTDEAPAREWLPAER---WDDRQRLLE 992

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKP-------TYSCTVSGIITELKLKTTY 1002
            EK  LG+ L+ H+F     E+R+F+   + +L+        +   TV+GI++ L    T 
Sbjct: 993  EKSALGYFLTGHLFDACRDEVRRFVKTRIGDLEKIVGKHFGSTPVTVAGIVSGLSTAMTR 1052

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            RGK++ +++DD S + E+ +  + +++ K++LKE+EL++V GK+ +D +    R++ E+I
Sbjct: 1053 RGKMVRVMLDDGSGTEEIAVFPEAWDQYKHLLKEDELVVVQGKLSKDDYSGGHRLSVERI 1112

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKN----GLPFVLYYCINKSIKYEM 1118
             D+  AR    +   +      + + L+++L+  +       G P  ++Y  + S    +
Sbjct: 1113 LDLGTARGENARALQLTIAGKPDAARLRELLMPHRVDGSQGEGCPVEIHY-YSDSATAVL 1171

Query: 1119 KFPLNYKVQPIDDLKLALINLGLYNAIIE 1147
            +    + V+P DD  LA +   L  A +E
Sbjct: 1172 RLGHQWAVRP-DDALLAGLKGWLTEARVE 1199


>gi|429462540|ref|YP_007184003.1| DNA polymerase III subunit alpha 1 [Candidatus Kinetoplastibacterium
            crithidii (ex Angomonas deanei ATCC 30255)]
 gi|451811330|ref|YP_007447785.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            crithidii TCC036E]
 gi|429338054|gb|AFZ82477.1| DNA polymerase III subunit alpha 1 [Candidatus Kinetoplastibacterium
            crithidii (ex Angomonas deanei ATCC 30255)]
 gi|451776488|gb|AGF47487.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            crithidii TCC036E]
          Length = 1164

 Score = 1108 bits (2866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/1166 (49%), Positives = 794/1166 (68%), Gaps = 31/1166 (2%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            +P FI+LR+HSE+S+ DGL+R+ND+++      QPA+A+TD+SNLFGI+KFYK A ++GI
Sbjct: 7    LPSFINLRVHSEFSVADGLIRVNDLVDNVIKLQQPAVALTDMSNLFGILKFYKYARSRGI 66

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            KPIIGCD+W++N+ +   P R+L+LV N  GYL LCE+++K+Y+ N    R EIR EWL 
Sbjct: 67   KPIIGCDLWLSNDEDLDNPFRILILVCNEVGYLNLCEIITKSYLINQRNNRPEIRKEWLF 126

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
              K   GLI LSG   GD+G A++ G+ D+A + AR W+++FP+++Y+EIQR        
Sbjct: 127  SKK---GLIVLSGGINGDVGYALKRGKIDVALSLAREWNEMFPESYYLEIQRAGFDGEEN 183

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             IQ  ++IA   N+P+VATHP+QFLKK  F AHE+R CI+EG+ L++  R   FTKEQ  
Sbjct: 184  YIQAVLSIAIETNIPVVATHPVQFLKKEHFQAHEIRVCISEGKHLTDIHRKHNFTKEQYL 243

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
             +  EM +LF DIPSA+ NTIEIAKRCNL L+ G+  LPKF   + I++ D+L   S  G
Sbjct: 244  VSSEEMTRLFADIPSALSNTIEIAKRCNLVLKTGQAMLPKFDVDEEISLGDYLRKLSNKG 303

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L  ++ NLY D E  +  K +Y +RL+ E + II+M F+GYFLIV DFI W KNN +PVG
Sbjct: 304  LLNKINNLYPDSE--ELFKSKYYERLEQECKIIIQMGFAGYFLIVQDFINWGKNNGVPVG 361

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFDIDFC + RDRVI YVK
Sbjct: 362  PGRGSGAGSLVAYALGITDLDPIKYDLLFERFLNPERVSMPDFDIDFCQDNRDRVIDYVK 421

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            ++YG ++VSQI TFGT  AK  IRDVGRVL L YS CDS+SKL+PF P +  TL   +  
Sbjct: 422  NKYGTESVSQIATFGTFGAKAVIRDVGRVLGLPYSLCDSLSKLVPFSPVEQWTLEKVLNS 481

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG- 540
            +P    R + EEEV+ LI+LA+ +EG++RN+GMHAGGVLIAP KL +FCPLY Q G    
Sbjct: 482  DPVFKSRYEQEEEVKLLIDLARHLEGLVRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENT 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
            ++SQ+DKDD+E  GL+KFDFLGL  L++LD T+ +IK  + +   F L+ L L D++T+ 
Sbjct: 542  LVSQFDKDDVELAGLVKFDFLGLRNLTVLDWTVRYIKLSSKENEFFDLSSLSLEDEETFK 601

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL   NT AVFQLES+GMK +LK+ +P  FE+IIA+++LYRPGP++  ++ +F  RKHG 
Sbjct: 602  LLCSGNTTAVFQLESKGMKELLKKLQPSTFEDIIAVLALYRPGPLESGMVNDFVNRKHGL 661

Query: 658  EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
               NY  P  + +L  TYG++VYQEQVM I+Q++GGYSLG ADLLRRA+GKK   EM +H
Sbjct: 662  SNINYFHPVLESILKSTYGVIVYQEQVMLISQVIGGYSLGSADLLRRAMGKKDPDEMSKH 721

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            R  F+ GAI  G S   A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY + F 
Sbjct: 722  RVLFEKGAISNGYSSQLAIKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAHYCAEFF 781

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE--SDGKHKKIRYGL 835
            A+ +S  MDDT+KI+IL  DA K   + ILPP+INLS + F P+I   +D K  +IRYGL
Sbjct: 782  ASAMSSDMDDTDKIQILFNDA-KYNNIKILPPDINLSNFRFEPVISEVNDRKSHEIRYGL 840

Query: 836  GAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKGTGK  IE IV  R + G F ++FDF  R+  K +NRR I SLI SG+FD     R
Sbjct: 841  GAIKGTGKIVIEEIVKIRNQDGPFKSIFDFCFRV-SKLVNRRTIESLIKSGSFDSIELNR 899

Query: 895  YMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNL--KEYLNYVKVPSWSKKQELIEEKK 952
              L++S+D  + + E+ ++ I Q SLF N++ +        + V V SW+  + LIEEK 
Sbjct: 900  AYLLSSLDKVIDSVEQKQRDIYQTSLFGNNEESCFLGSSVADEVAV-SWNLHKTLIEEKS 958

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL----KPTYSCTVSGIITELKLKTTYRGKILI 1008
             LG+C S H+F  +E EIR+  P  L ++    KP + C   G++  ++   T RGKIL+
Sbjct: 959  ALGYCFSGHLFSCWEDEIRKLFPKKLIDVDHNNKPQWIC---GVLVRMRSLFTRRGKILL 1015

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            I++DD S  +EV++ N+LY + KN LKE+ LLIV G V +D +  N+RI +E+I D+   
Sbjct: 1016 IMLDDGSKQLEVVVYNELYTEIKNYLKEDNLLIVKGMVSKDDYSGNLRIISEQIHDLQFI 1075

Query: 1069 RILYGKKFSVMF-NRTFNISILKKILLRFK-----CKNGLP-FVLYYCINKSIKYEMKFP 1121
            R    K   +   N  F++S LK IL +FK       + +P F+LY   +K+   ++K  
Sbjct: 1076 RQTMAKCLRLHIKNSKFSLSSLKDILQKFKNYSDVGSSSVPLFILYKNEDKNFFCKIKLD 1135

Query: 1122 LNYKVQPIDDLKLALINLGLYNAIIE 1147
              + +   ++L L L  L   N  I+
Sbjct: 1136 DKWNIIITNELILELQKLMRDNGSID 1161


>gi|257092573|ref|YP_003166214.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045097|gb|ACV34285.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1156

 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1148 (47%), Positives = 768/1148 (66%), Gaps = 27/1148 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            FIHLRLHSEYSI DG++R++D +  AA    PALA++DL+N+FG++KFY SA +KGIKPI
Sbjct: 6    FIHLRLHSEYSITDGIVRLDDAVARAAGYGMPALALSDLANVFGLVKFYSSARSKGIKPI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G DV I N+ +  +P RLLLL ++  GYLQLCELLS+AY+     GRAEI    LE+  
Sbjct: 66   LGSDVCIANDGDPDRPYRLLLLCRSRPGYLQLCELLSRAYLAPRVRGRAEITRRMLEEVG 125

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              DGLIALSGA  GD+G A+  G  ++A N A RW K FP  FY+E+QR+ Q      + 
Sbjct: 126  V-DGLIALSGAAAGDVGEALLQGNQELAANRAARWEKTFPGAFYLEVQRYGQAQQEALVA 184

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
               ++A  + LP+VATHPIQFL++ +F AHE R CIAEG +L + +R +  T+EQ FK+ 
Sbjct: 185  ATADLAGELGLPLVATHPIQFLERDDFKAHEARVCIAEGYMLGDARRPRLHTEEQYFKSA 244

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM+ LF D+P A+ N++EIAKRCNL++  GK  LP FPTP  + ++DFL  ++  GL+ 
Sbjct: 245  DEMLALFGDLPEALANSVEIAKRCNLQITLGKSYLPDFPTPAGVTLDDFLRQQAVAGLEI 304

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  L+ DP++   E+  Y  RLQ E +TI++M F GYFLIV+DFI WAK+NS PVGPGR
Sbjct: 305  RLQQLFPDPDVRTAERAPYDARLQLETDTIVQMGFPGYFLIVADFINWAKHNSCPVGPGR 364

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA S+VAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC + R RVI+YV+ +Y
Sbjct: 365  GSGAGSVVAYALGITDLDPLRYALLFERFLNPERVSMPDFDIDFCQDNRWRVIEYVRQKY 424

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G  AVSQIVTFGTM++K  IRDVGRVLDL Y+FCD +SKLIP +  K ++L+ AI  EPQ
Sbjct: 425  GAAAVSQIVTFGTMSSKAVIRDVGRVLDLPYNFCDQLSKLIPVETNKPLSLAKAIAAEPQ 484

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
            L  RI +EEEVR L  LA ++E + RNVGMHAGGVLIAP KL +FCP+Y  +G + ++SQ
Sbjct: 485  LQARIDDEEEVRDLFALAARLEDLTRNVGMHAGGVLIAPGKLTDFCPVYSADGGS-VVSQ 543

Query: 545  YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKK 604
            +DKDD+E++GL+KFDFLGL  L+I++  + ++++++    +  L  +  +D   Y +LK 
Sbjct: 544  FDKDDVEKVGLVKFDFLGLRNLTIIELALKYVEQLSGVRPD--LATMAFDDPQAYQILKD 601

Query: 605  ANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHGEY-FN 661
             NT A+FQ+ES+GMK ++++  PD FE+IIA+++LYRPGP+   ++ +F  RK G+    
Sbjct: 602  GNTTAIFQVESEGMKKLVRKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKKGQQKIE 661

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            Y     K  L  TYG++VYQEQVMQIAQI+GGY+LG ADLLRRA+GKKK  EM  HR   
Sbjct: 662  YYIDDLKACLEPTYGVIVYQEQVMQIAQIIGGYTLGAADLLRRAMGKKKAEEMALHRDLM 721

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GA K G  +  A ++F+ +EKFA YGFNKSH  AYA+++Y+TA+LK H+ + FMAA L
Sbjct: 722  REGARKKGYDEKLAMQLFDLMEKFAEYGFNKSHTAAYAVVTYHTAWLKAHHCAAFMAATL 781

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGT 841
            S  MD T+ +KI   DAI   GL IL P++N S+Y F P+  S      +RYGLGA+KGT
Sbjct: 782  SSDMDVTDTVKIFHDDAINN-GLRILGPDVNASEYRFMPVDRS-----TVRYGLGAVKGT 835

Query: 842  GKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
            G+  + AI+ T    G F +LFDF +R+DK+ +NRR I +LI +GAFD  +  R  L+AS
Sbjct: 836  GEQAVNAILKTRSAAGAFRDLFDFCRRVDKRLVNRRTIEALIRAGAFDSLDSHRARLLAS 895

Query: 901  IDVALKNAEKTKKFINQLSL---FKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFC 957
            + +A++ AE+ ++   Q+SL   F+     + +    YV+V  WS++Q+L EEK  LGF 
Sbjct: 896  VGIAMEAAEQAERNAMQVSLFDIFEAGGEEDREHGPQYVEVARWSERQKLNEEKLALGFY 955

Query: 958  LSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSN 1016
             S H F   + E+ +F+   L+ L+       ++G++  ++ K T RGK++ + +DD S 
Sbjct: 956  FSGHPFHSVQAEVSRFVRTRLAALEARKEVQWLAGLVVGVRSKLTARGKMVFVQLDDGST 1015

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN--IRINAEKIFDINVARILYGK 1074
            S+EV + ++L E  +  ++E+E+LIV G+V  D F     +RI AE +  +  AR  + +
Sbjct: 1016 SLEVSVFSELLESERAKIREDEVLIVEGRVQRDDFAGEGRVRIIAEHLLTLAEARGRFAR 1075

Query: 1075 KFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
               +  N   + S  +  + R +           P  L Y  N     E+ F    +V+ 
Sbjct: 1076 HLRLSLNGQASGSGARAAVQRLRTLLAPYTPGNCPVRLAY-RNGEASCELAFGDANRVRL 1134

Query: 1129 IDDLKLAL 1136
             DDL +AL
Sbjct: 1135 EDDLLVAL 1142


>gi|388568626|ref|ZP_10155041.1| DNA polymerase III, alpha subunit [Hydrogenophaga sp. PBC]
 gi|388264237|gb|EIK89812.1| DNA polymerase III, alpha subunit [Hydrogenophaga sp. PBC]
          Length = 1189

 Score = 1103 bits (2853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/1120 (50%), Positives = 752/1120 (67%), Gaps = 51/1120 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+SI+DG  RI+DV+ AAA D QPALAITDL+NLFG +KFY++  + G+KPI
Sbjct: 2    FVHLRLHTEFSIVDGTNRIDDVVAAAAADGQPALAITDLNNLFGAVKFYRAGRDAGVKPI 61

Query: 65   IGCDVWI---TNEIENKKPS-------RLLLLVKNNNGYLQLCELLSKAYIENINYGRAE 114
            IG +V +   T+E  N  P        R+LLLV++  GYL L ELL++A+  N+   +A 
Sbjct: 62   IGAEVLLQGFTDETPNAMPGAHQPPLPRVLLLVQDKQGYLNLSELLARAWTRNVVRDQAV 121

Query: 115  IRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF 174
            ++ EWLE+     GLI L+GA  G +G A+  G    A + A   + +FP  FYIE+QR 
Sbjct: 122  LKREWLEE--LSAGLILLAGAQAGPVGQALLAGDAQRASDNALTLAAMFPHRFYIELQRA 179

Query: 175  KQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKK 234
             + +    +     +A+ + LP+VATHP+QFL   ++ +HE R CIAEGEIL+N +R+++
Sbjct: 180  GRADDERHVVAAAQLAARLRLPVVATHPVQFLGPDDYESHEARVCIAEGEILANNRRVRR 239

Query: 235  FTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP----KNINI 290
            FT+EQ FK  ++M  LF D+PSA+ NT EIAKRCNL L  GKP+LP FPTP      + +
Sbjct: 240  FTREQWFKPAADMAALFADLPSAVANTAEIAKRCNLTLVLGKPQLPNFPTPLIDGVPMPM 299

Query: 291  NDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFI 350
             DF    S  GL++RL +LY D      ++ RY +RL+FEI TI+KM F GYFLIV DFI
Sbjct: 300  EDFFRQSSFEGLEERLAHLYPDAAERDKQRPRYVERLEFEIGTILKMGFPGYFLIVGDFI 359

Query: 351  QWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCP 410
             WAKNN  PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC 
Sbjct: 360  NWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQ 419

Query: 411  EGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPG 470
              RDRVI YVK +YGKDAVSQI TFGTMAA+ AIRDVGRVLDL Y FCD ISKL+P KPG
Sbjct: 420  GNRDRVIDYVKQKYGKDAVSQIATFGTMAARAAIRDVGRVLDLSYGFCDGISKLVPNKPG 479

Query: 471  KLITL-------------SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAG 517
              +TL             + A++ EP LAER++ EE+V+ LIELA+++EG+ RNVGMHAG
Sbjct: 480  MSVTLQYPPVPKKEGDKNNYALEMEPVLAERVRQEEDVKTLIELAQKLEGMARNVGMHAG 539

Query: 518  GVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK 577
            GVLIAP KL +FCPLY Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI 
Sbjct: 540  GVLIAPGKLTDFCPLYAQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIV 599

Query: 578  KINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALI 637
            K +    NF    + L+D   Y L  +  T AVFQ ES+GM+ ML++AKP   E++IAL 
Sbjct: 600  KRHKGQENFRFEDVRLDDPKVYALFSRGQTEAVFQFESRGMQGMLRDAKPTRLEDLIALN 659

Query: 638  SLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSL 696
            +LYRPGPMDLI +F  RKHG E   YP P   D+LSETYGIMVYQEQVMQ AQILGGYSL
Sbjct: 660  ALYRPGPMDLIPSFVARKHGREVVEYPHPAVADMLSETYGIMVYQEQVMQTAQILGGYSL 719

Query: 697  GQADLLRRAIGKKKTSEMIEHRKFFQNGAIK-YGLSKHKANEIFNEIEKFAGYGFNKSHA 755
            G ADLLRRA+GKKK  EM EHR+ F+ GA+K + + + KA+E+F+ +EKFAGYGFNKSHA
Sbjct: 720  GGADLLRRAMGKKKAEEMAEHREKFRAGALKTHNIPQDKADEVFDLMEKFAGYGFNKSHA 779

Query: 756  TAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSK 815
             AY+LL+Y+T +LK HY++ F  AN+++ MDDT+K+K+L +DA K  GL+  PP++N   
Sbjct: 780  AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQK-MGLAFEPPDVNRGV 838

Query: 816  YYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER----------KFGFFTNLFDFT 865
            Y F P+ +     K IRYGLGAIKGTG+  IEAIV  R          + G F +LFDF 
Sbjct: 839  YRFEPVTD-----KLIRYGLGAIKGTGQQAIEAIVAAREGRGEGPNGQETGPFKSLFDFC 893

Query: 866  KRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFK--- 922
             R+D+  IN+R + +LI +GAFD  +  R  L+A++D+A + A  T+   NQ  LF    
Sbjct: 894  LRVDRTRINKRTVEALIKAGAFDALHLNRAELLATLDIAFEYAATTQANANQGGLFDMLG 953

Query: 923  NDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK 982
             DD+ +  +  + V    W  K++L  EK  +GF  S H+F   E E+R+F    L ++ 
Sbjct: 954  GDDHGSSTQEPDLVATMPWGVKEKLTLEKSAIGFYFSGHLFDEVEREVRRFARTRLVDVV 1013

Query: 983  PTYSCTV-SGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLI 1041
             +    + +GI+T+ ++    RGK+ +  IDD +  +E   +  L   ++ +LK++EL++
Sbjct: 1014 DSRDPVILAGIVTDFRVINGQRGKLALFKIDDKTGVLETSADENLINAHRALLKDDELIV 1073

Query: 1042 VSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN 1081
            V      DRF   +R+  ++++D+  AR  +GK   V  N
Sbjct: 1074 VQAVAQPDRFSGGLRLKIQQVWDLASARCRFGKYLRVAVN 1113


>gi|451936308|ref|YP_007460162.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            oncopeltii TCC290E]
 gi|451777231|gb|AGF48206.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            oncopeltii TCC290E]
          Length = 1158

 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/1097 (51%), Positives = 753/1097 (68%), Gaps = 15/1097 (1%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
             F+HLR+HSE+SI+DG++RI  +I    +  QPA+A+TDLSN+FGIIKFYK+A   GIKP
Sbjct: 7    SFVHLRVHSEFSIVDGIVRIEQLINLVKDSNQPAVALTDLSNVFGIIKFYKAARASGIKP 66

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IIGCDVW+TN+    +P R+LLLV N+ GYL LC LL+K+++ N   GRAE+R EWL   
Sbjct: 67   IIGCDVWLTNDKNRDRPFRILLLVCNHEGYLNLCSLLTKSFLCNQYNGRAELRKEWLSG- 125

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
              Q+GLI LSG  LGDI  A++   +D+A + A +W  +FP++FYIE+QR   P  +   
Sbjct: 126  --QNGLIVLSGGLLGDIAYALEINNHDLALDLANQWKLMFPNSFYIELQRAGFPGEDNYN 183

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
               + IAS +NLP+VATHPIQFL+  EF +HEVR CIAEG  LS+ KR+  F KEQ F  
Sbjct: 184  HMALVIASKLNLPVVATHPIQFLRPNEFQSHEVRVCIAEGSHLSDAKRVSSFRKEQYFFH 243

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              +M  LF DIPSAI NTIEIAKRC+L +  G P LP+F      +++D+LIS ++ GLK
Sbjct: 244  SEKMFDLFSDIPSAIFNTIEIAKRCSLTMRLGIPNLPRFEIDPKYSLSDYLISMAEIGLK 303

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            KRL  L  D +I +  K  Y  RL  E  TI +M F+GYFLIV DFI W KNN +PVGPG
Sbjct: 304  KRLDFLGTD-KINEVNKKIYYDRLYEECITINQMGFAGYFLIVQDFINWGKNNGVPVGPG 362

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAYSL ITDI+P+ Y+LLFERFLNP R+SMPDFDIDFC + RDRVI+YVK +
Sbjct: 363  RGSGAGSLVAYSLGITDINPMDYDLLFERFLNPERVSMPDFDIDFCQDNRDRVIEYVKSK 422

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG DAVSQI TFGT  AK  IRDVGRVL + YS CD +SKLIPF   +  TLS  +  + 
Sbjct: 423  YGYDAVSQIATFGTFGAKAVIRDVGRVLGMPYSLCDGLSKLIPFSVSEQWTLSRVLDSDA 482

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGII 542
               +R + EEEVR LI++A+ +EG+ RNVGMHAGGVLIAP KL +FCPLY Q G    ++
Sbjct: 483  IFRDRYEKEEEVRTLIDIARPLEGLSRNVGMHAGGVLIAPGKLTDFCPLYCQPGQENSVV 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQ+DKDD+E  GL+KFDFLGL  L++LD ++ ++++ N    NFS+  LPL+D  TY+LL
Sbjct: 543  SQFDKDDVESSGLVKFDFLGLRNLTVLDWSVKYVRQCNKGMDNFSIISLPLDDHKTYDLL 602

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EY 659
             K NTVAVFQLES+GM+ +LK  KP  FE+IIA+++LYRPGP++  ++ +F  RKHG   
Sbjct: 603  SKGNTVAVFQLESKGMRELLKRLKPSNFEDIIAILALYRPGPLESGMVNDFVSRKHGLSS 662

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
             NY     ++VL  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKK   EM +HR 
Sbjct: 663  INYFHEDLENVLKSTYGVIVYQEQVMLISQIIGGYSLGSADLLRRAMGKKDPEEMAKHRI 722

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GA+  G S   A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LKT++ + F AA
Sbjct: 723  IFEKGAVNNGYSSDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKTNHPAEFFAA 782

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  MDDT+K++ +  DA K   + I PP+INLS++ F P+ E   +   IRYGLGAIK
Sbjct: 783  TMSSDMDDTDKMQTIFNDAKKN-HIKIFPPDINLSEFRFKPVDED--QKIAIRYGLGAIK 839

Query: 840  GTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTGKS I+ IV  R + G F ++FDF  R+  K +NRR I SLI SGAFD  +  R  ++
Sbjct: 840  GTGKSAIDEIVKSRNYKGPFIDIFDFCYRM-FKILNRRAIESLIKSGAFDSTDSNRAKVL 898

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEY-LNYVKVPSWSKKQELIEEKKVLGFC 957
            AS+++AL+ A+     INQ SLF +D    + ++ LN   VP W   ++L EEK  +G+ 
Sbjct: 899  ASLNMALEIADHRNTNINQSSLFGDDYEQEMPKFRLNTCNVPEWDLLKKLTEEKNAIGYH 958

Query: 958  LSEHIFCIYETEIRQFIPIYLSELKPT-YSCTVSGIITELKLKTTYRGKILIIVIDDNSN 1016
             S H+F  +  EIRQ IP  LS+++P   S  + GII  +K  TT RGK+ I +IDD + 
Sbjct: 959  FSGHLFEYWRDEIRQIIPNTLSKIRPNKQSQWICGIILSIKNITTRRGKMFIALIDDETA 1018

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
              E++I    Y+K KN L+E+ L+     V +D +  N+R   E+I+ IN  R    K  
Sbjct: 1019 QAEIVIYPDFYDKYKNDLREDNLIAAKVVVSDDSYSNNLRAIVEQIYSINDIRTYMSKAV 1078

Query: 1077 SVMFNRTFNISILKKIL 1093
             +  +   N+ IL+ +L
Sbjct: 1079 KISIDSDINLEILRDLL 1095


>gi|89900825|ref|YP_523296.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118]
 gi|89345562|gb|ABD69765.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118]
          Length = 1185

 Score = 1100 bits (2845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1105 (50%), Positives = 743/1105 (67%), Gaps = 46/1105 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            FIHLRLH+E+S++DG  RI D ++AAA D QPALAITDLSNLFG IKFYK+A   G+KP+
Sbjct: 2    FIHLRLHTEFSVVDGTNRIGDSVKAAAADGQPALAITDLSNLFGAIKFYKAARKCGVKPL 61

Query: 65   IGCDVWITNEIENKKPSRLLLL-VKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IG ++W+    ++      LLL V+N  GYL L ELL++A+ +  N  +A ++++WL++ 
Sbjct: 62   IGAEIWLEGLGQDASALSRLLLLVQNKQGYLNLSELLARAWTQQGNKAQASVKLDWLKE- 120

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               +GLI LSGA  G +G A+  G    A + A + + +F   FY+E+QR  +P+    +
Sbjct: 121  -LGEGLIVLSGAQAGPVGQALLQGDVARALDAALQLAGVFTHRFYLELQRAGRPDDEAHV 179

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
               + +A+   LP+VATHPIQF    +F AHE R CIA+GEILSN +R+++FT+EQ FK+
Sbjct: 180  VATVQLAARAGLPVVATHPIQFAGPDDFEAHEARVCIADGEILSNPRRVRRFTREQYFKS 239

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP----KNININDFLISKSK 299
             ++M  LF D+PSA+ NT+EIA+RCNL L   KP+LP FPTP    + +  +D+    S 
Sbjct: 240  SAQMQALFADVPSALANTLEIARRCNLTLVLDKPQLPDFPTPEVNGQRMTPDDYFRYASH 299

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GLK+R+ +LY D      E  RY  RL+FE+ TI+KM F GYFLIV DFI WAKNN  P
Sbjct: 300  EGLKERMAHLYPDAAQRGQEMPRYLARLEFELNTIVKMGFPGYFLIVGDFINWAKNNGCP 359

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   R+ VI Y
Sbjct: 360  VGPGRGSGAGSLVAYSLKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQTNRNLVIDY 419

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS--- 476
            VK +YGKDAVSQIVTFGTMAA+ A+RDVGRVLD+ Y+FCD ISKLIP KPG  ++L    
Sbjct: 420  VKSKYGKDAVSQIVTFGTMAARAAVRDVGRVLDMSYTFCDGISKLIPNKPGVSVSLQLPP 479

Query: 477  ----------NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKL 526
                       A++ EP LAER   EE+V+ L+ELA+++EG+ RNVGMHAGGVLIAP KL
Sbjct: 480  PDRKKDDKTVYAVEAEPLLAEREAKEEDVKTLLELARKLEGLTRNVGMHAGGVLIAPGKL 539

Query: 527  INFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF 586
             +FCPLY+Q G    +SQ+DK D+E IGL+KFDFLGL TL+IL+    FI + +    NF
Sbjct: 540  TDFCPLYQQPGSDSAVSQFDKYDVEAIGLVKFDFLGLATLTILEIARDFIIERHRGQENF 599

Query: 587  SLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD 646
            +   LPL+D   Y L ++  T AVFQ ES+GM+ MLK+AKP   E++IAL +LYRPGPMD
Sbjct: 600  AFENLPLDDMRVYKLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIALNALYRPGPMD 659

Query: 647  LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
            LI +F  RKHG E   YP P   ++LSETYGIMVYQEQVMQ AQILGGYSLG AD+LRRA
Sbjct: 660  LIPSFVARKHGREVVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADMLRRA 719

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKK   EM   R+ F++GA K  +++ KA+E+F+ +EKFAGYGFNKSHA AY+LL+Y+T
Sbjct: 720  MGKKDADEMARQRQIFRDGAAKNNINQAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHT 779

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
            A+LK HY++ F  AN+++ MDDT+K+K+L +DA+K  GL+  PP++N     F PI +  
Sbjct: 780  AWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDALKM-GLTFEPPDVNRGGSRFEPISD-- 836

Query: 826  GKHKKIRYGLGAIKGTGKSTIEAIVTERK----------FGFFTNLFDFTKRIDKKYINR 875
               K IRYGL AIKG+G+  IEAIV  R+           G F +LFDF  R+D+  +N+
Sbjct: 837  ---KVIRYGLSAIKGSGQQAIEAIVAAREGRGVGPSGDVAGPFKSLFDFCVRVDRSRVNK 893

Query: 876  RIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDN--NNLKEYL 933
            R + +LI +GAFD     R  L+AS D+A +         NQ  LF  DD+   +  +  
Sbjct: 894  RTVEALIKAGAFDAIQLNRASLLASTDLAFEFGAAALANANQGGLFDMDDDAQGSSTQEP 953

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL----KPTYSCTV 989
              V+   W  K+ L  EK  +GF LS H+F     E+R+F    + +L    +P     +
Sbjct: 954  ELVQAVPWGVKERLTFEKTAVGFYLSGHLFDEVALEVRRFAKRQIDDLIDIREPQL---L 1010

Query: 990  SGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049
            +GIIT+ ++    RGK+ +  +DD S  +E   +  L   +KN+LK++EL+IV G++  D
Sbjct: 1011 AGIITDFRVINGQRGKLALFKLDDKSGVIEARADEALINAHKNLLKDDELVIVMGQLKPD 1070

Query: 1050 RFLKNIRINAEKIFDINVARILYGK 1074
            RF   +++   +I+D+  AR  +GK
Sbjct: 1071 RFSGGMQLTVTQIWDLEQARCRFGK 1095


>gi|254468287|ref|ZP_05081693.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13]
 gi|207087097|gb|EDZ64380.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13]
          Length = 1156

 Score = 1098 bits (2840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/1149 (49%), Positives = 782/1149 (68%), Gaps = 38/1149 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +FIHLR HSEYSI DG++R+ D +  A      +LAI+DLSN+F  +KF+K A + GIKP
Sbjct: 8    KFIHLRCHSEYSITDGIVRLGDYVSLAKELELESLAISDLSNIFAAVKFFKLATSNGIKP 67

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IIG DV+I N+    +PSRLLL+ +N  GYL L +LLS+AY EN    R EI+ EWL  +
Sbjct: 68   IIGADVYIQNDDNRDQPSRLLLICQNKQGYLNLSKLLSRAYTENQYRDRPEIKFEWLFSD 127

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP------ 177
             +  GLI LSG + G IG  + + + D A + A++  + F D FY+E+QR++        
Sbjct: 128  -FNHGLICLSGFNFGAIGQNLLSQKKDKAIHIAKQLKEAFDDRFYLEVQRYEVEKKVEEQ 186

Query: 178  -NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFT 236
             N+   I Q   +  ++++P+VAT PIQF+KK +F AHE +TCIA+G +L + +R K FT
Sbjct: 187  ENLVLAIAQ---LGYDLDIPLVATQPIQFIKKEDFQAHEAKTCIADGYVLGDQRRPKNFT 243

Query: 237  KEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLIS 296
             EQ FKT +EM  LF DIPSAI NT+EI+KRCN + E G   LP FP P+ + +N++L +
Sbjct: 244  AEQYFKTPAEMAVLFEDIPSAISNTLEISKRCNFEFELGNVFLPDFPIPEGLTVNEYLEN 303

Query: 297  KSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
             +  GL+K+L NLY + + +K ++ +Y  RL FEI  I +M ++GYFLIV+DFI WAK N
Sbjct: 304  TAIEGLEKKLKNLYPEVKDFKTQEKKYLDRLHFEINVINQMGYAGYFLIVADFINWAKEN 363

Query: 357  SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
            ++PVGPGRGSGA S+VA++L ITD+DPLSYNLLFERFLNP R+SMPDFDIDFC EGRDRV
Sbjct: 364  NVPVGPGRGSGAGSVVAFALGITDLDPLSYNLLFERFLNPERVSMPDFDIDFCQEGRDRV 423

Query: 417  IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
            I+YVK+RYG DAVSQIVTFGTMAA+  IRDVGRVLDL + F D I+KLIP + G  I+L 
Sbjct: 424  IEYVKERYGYDAVSQIVTFGTMAARAVIRDVGRVLDLPFPFVDGIAKLIPMELG--ISLK 481

Query: 477  NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQE 536
            +AI++E Q+ +RIKNEEEV++L +LA ++EG++RNVGMHAGGVLIAP K+ ++ PLY QE
Sbjct: 482  DAIEKEEQIQQRIKNEEEVKELFDLALKLEGLVRNVGMHAGGVLIAPGKISDYSPLYCQE 541

Query: 537  GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLN 594
            G  G++SQ+DKDD+E IGLIKFDFLGL TL+IL   +    K+          L+ +PL+
Sbjct: 542  GGEGMVSQFDKDDVESIGLIKFDFLGLRTLTILSMALNNANKMRATEGKPPIYLDDIPLD 601

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRR 654
            D++T+  L  ANT AVFQLES+GMK+MLK+AKPD FE+IIAL++LYRPGPMDLI +FC+R
Sbjct: 602  DEETFEWLSNANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCKR 661

Query: 655  KHGEYF-NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG+   +YP P T+ +L ETYGI VYQEQVMQIAQ + GY+LG ADLLRRA+GKKK  E
Sbjct: 662  KHGQQLVSYPHPSTEGILKETYGIAVYQEQVMQIAQTVAGYTLGGADLLRRAMGKKKVEE 721

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M   R+ F  GA + GL K +A+ +F+ +EKFAGYGFNKSHA AYA ++Y TAYLK HY+
Sbjct: 722  MDAQREVFIQGATQNGLEKQQASNLFDLLEKFAGYGFNKSHAAAYAKIAYQTAYLKRHYT 781

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            S F+AA++S  M++T+ I +L  D +    + +LPP+IN S + F P+       K+I Y
Sbjct: 782  SSFIAASMSADMNNTDNIALLFDDCVLN-KIKLLPPSINNSVFRFQPL-----NDKEILY 835

Query: 834  GLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKGTG + IE I+ +R   G + +LF+F  R+D + +NR++I SLI +GAFD   +
Sbjct: 836  GLGAIKGTGLAAIEVILEDRNSNGPYQSLFEFCARLDLRKVNRKVIESLIRAGAFDELEK 895

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             R  L+ASI+ A+  AE++K  + Q SLF  + N   KE  NYV    W  K+++ EEK 
Sbjct: 896  NRASLLASINQAISLAEQSKSHMGQDSLFGEEAN---KEVTNYVATDEWDSKRQIYEEKV 952

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVI 1011
             LGF  S H F  Y+  +R   P  L + +P+ +   +SG++   + + T RGKI I+ +
Sbjct: 953  ALGFYYSGHPFSHYKEMVRAMYPQSLRDARPSNNNQWLSGVVMAARNRMTQRGKIAIVTL 1012

Query: 1012 DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARIL 1071
            DD    +++I+ ++L      ++KE++LLIV GKV  D F    R++A  IFD+   +  
Sbjct: 1013 DDGEGRLDMIVGSKLLSTVYPLIKEDQLLIVEGKVSPDEFTGGNRVSAVNIFDLLTVQSR 1072

Query: 1072 YGKKFSVMFNRTFNISILKKILLRFKCKNG--------LPFVLYYCINKSIKYEMKFPLN 1123
              K+  +      N   LK +L  +   NG         P V+ Y  N+    E+K   N
Sbjct: 1073 KTKQIKINVGENLNPEQLKLLLKPY--SNGAYPQEIGRCPVVIEYQ-NQEGSAEIKLGDN 1129

Query: 1124 YKVQPIDDL 1132
            + V P ++L
Sbjct: 1130 WAVAPHENL 1138


>gi|30249925|ref|NP_841995.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas
            europaea ATCC 19718]
 gi|30139032|emb|CAD85889.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas
            europaea ATCC 19718]
          Length = 1169

 Score = 1096 bits (2835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1128 (48%), Positives = 778/1128 (68%), Gaps = 46/1128 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLRLHSEYS++DG++R+ + +  A +   PALA+TDLSNLFG++KFY+ A+  GIK
Sbjct: 5    PVFIHLRLHSEYSVVDGIVRVEEAVAKARDVGMPALALTDLSNLFGLVKFYQCAFKAGIK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL-E 121
            PI GCDVW+TNE +  +P RLLLL ++ +GYL L  LLS+AY EN+  GRAE++  W  E
Sbjct: 65   PIAGCDVWVTNENDADRPFRLLLLCQSFSGYLLLSRLLSRAYRENMCRGRAELKKSWFRE 124

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            ++   +GLIALSG   G++   +       A   A++W+ +FP  FY+EIQR  +PN   
Sbjct: 125  EDAGTEGLIALSGGGQGEVE-QLLLADPPAAVTAAQQWADLFPGRFYLEIQRCGRPNEET 183

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
                 +++AS++ LP+VATHP+QF++  +F AHE R CIA+G +L + +R K+FT +Q F
Sbjct: 184  SGYALLDLASSLKLPVVATHPVQFMRPEDFRAHEARVCIAQGYVLGDRRRPKEFTGQQYF 243

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            KT +EM +LF D+P A+ N++EIA+RC+L LE G  +LP FPTP  I++   L   ++ G
Sbjct: 244  KTPAEMGELFRDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGISVEQHLRELAQTG 303

Query: 302  LKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            L+ RLL  +  P++ + ++ R  Y+ RL FE+ETII+M F+GYFLIV+DFI WAK + +P
Sbjct: 304  LEARLLQSF--PQVLQRDERRPIYQMRLDFEVETIIQMGFAGYFLIVADFIGWAKQHDVP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + R++VI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLGITDLDPLLYDLLFERFLNPERVSMPDFDIDFCQDRREQVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+DRYG ++V+QI TFGTMAAK  +RDVGRVLDL Y+F D ++KL+PF+ G  +TL  A 
Sbjct: 422  VRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKLVPFELG--MTLRKAR 479

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP L +R + EE+VR L+ELA+++EG+ RNVGMHAGGVLIAP K+ +FCP+Y  +   
Sbjct: 480  EIEPLLNQRAEEEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPGKITDFCPVYCADSGD 539

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT---------------T 584
             ++SQYDKDD+E++GL+KFDFLGL TL+ILD+ +  I++    +               +
Sbjct: 540  AVVSQYDKDDVEKVGLVKFDFLGLRTLTILDRAVADIRQYRAASPGSAVAEPDVQSAEES 599

Query: 585  NFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGP 644
            +FSL  + L D  T++L+ K NTV +FQ ES+GMK++L+ A+PD FE++IAL++LYRPGP
Sbjct: 600  HFSLESISLEDAATFSLMAKGNTVGIFQFESRGMKDLLQRARPDRFEDLIALVALYRPGP 659

Query: 645  MDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            MDLI +F  RKHG+  +Y DPR + +L  TYGIM+YQEQVMQIAQ++GGYSLG ADLLRR
Sbjct: 660  MDLIPDFIERKHGKRVDYLDPRLQPILGPTYGIMIYQEQVMQIAQVIGGYSLGGADLLRR 719

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM + R  F  GAI+  +++  A  +F  +EKFAGYGFNKSHA AYAL++Y 
Sbjct: 720  AMGKKKVEEMAQQRAVFVEGAIRNEMAEADAVTLFGLMEKFAGYGFNKSHAAAYALIAYQ 779

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TAYLKTHY + FMAA +S  MDDT+K+ +  +D  K  G+ ILPP+IN S YYF P+   
Sbjct: 780  TAYLKTHYPAEFMAACMSSDMDDTDKVNVFYEDC-KLNGIVILPPDINESGYYFVPV--- 835

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSLIN 883
               HK IRYGLGA+KG+G++ I AIV  R+ G  FT LFDF +R+D++ +NRR I +LI 
Sbjct: 836  --DHKTIRYGLGAVKGSGEAAISAIVQVREQGSTFTGLFDFCRRVDRRIVNRRTIEALIR 893

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            +GAFD     R  L+ S+  A++ AE+     +Q+SLF  D+N +L +      V  W +
Sbjct: 894  AGAFDSVETNRAALLESVGNAMEYAEQCSLAASQVSLF--DENTDLIQPPAITGVAQWPE 951

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTY 1002
            +++L  EK  LGF LS H +  Y  E+  FIP+ LS + P      ++G+I  ++ + + 
Sbjct: 952  REKLQNEKMALGFYLSGHPYDSYARELSCFIPVRLSRIVPGREPQLIAGVIYAIRTQMSR 1011

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE------DRFLKNIR 1056
            RGK+ I+ +DD    VEV++ + L     + +K ++LL+V   V        DR     R
Sbjct: 1012 RGKMAIVTLDDGLARVEVVVYSDLLSTGSHFMKADQLLVVRALVSHGNGENADR-----R 1066

Query: 1057 INAEKIFDINVARILYGKKFSVMFNRT--FNISILKKILLRFKCKNGL 1102
            I A++I+D   AR ++ +K  +M + +     + LK++L     +NG+
Sbjct: 1067 IVAKEIYDYVTARSMHARKLRIMIDDSGLLTPAQLKELLAANLPENGV 1114


>gi|224827306|ref|ZP_03700398.1| DNA polymerase III, alpha subunit [Pseudogulbenkiania ferrooxidans
            2002]
 gi|224600481|gb|EEG06672.1| DNA polymerase III, alpha subunit [Pseudogulbenkiania ferrooxidans
            2002]
          Length = 1147

 Score = 1096 bits (2834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/1141 (49%), Positives = 775/1141 (67%), Gaps = 17/1141 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSE+S+ DG++R++D ++ A     PA+ ++DL NLFG++KFYK+    GIK
Sbjct: 4    PRFVHLRLHSEFSVYDGIVRLDDAVKRAKQHGMPAIGMSDLMNLFGMVKFYKACRGNGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+  D  I+N+ +  KPSRLLL  KN  GYL+LC+LL++A + N   GRAE++ EWLE 
Sbjct: 64   PIVSVDALISNDDDRDKPSRLLLTAKNRAGYLRLCDLLTQAVLHNQYRGRAELKREWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            N     LI LSGAHLGD+G+A+ NG+ D+AE  AR W+ +FPDNFY+E+QR   P +   
Sbjct: 123  NGDNSQLICLSGAHLGDVGMALANGQRDVAERRARYWAGLFPDNFYLEVQRLDNPQIEGV 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A    LP+VATHPIQF+   +F AHE R CIAEG  L + +R K F + Q F 
Sbjct: 183  VQQTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKRRPKNFAECQYFL 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EMI+ F+DIP A++N++EIA+RCN+ ++ GK  LP FPTP+ + ++D+L+  SK GL
Sbjct: 243  STEEMIERFHDIPEALENSVEIARRCNITVQLGKNYLPDFPTPEGMTLDDYLVHLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY DPE+   E+ RY  RL+ E +TI++M F GYFLIV+DFI WAKNN  PVGP
Sbjct: 303  ETRLEKLYPDPEVRAAERPRYDARLKIECDTIVQMGFPGYFLIVADFIVWAKNNGCPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVA+SL ITDIDPL+Y LLFERFLNP R+SMPDFD+DFC + R RVI+YV+ 
Sbjct: 363  GRGSGAGSLVAFSLGITDIDPLAYALLFERFLNPERVSMPDFDVDFCQDNRYRVIEYVRQ 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG +AVSQI TFGTMAAK  +RDVGRVLDL Y FCD +SKLIP  PGK  +L +A++ E
Sbjct: 423  KYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIPAAPGKQYSLDDAVEME 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI- 541
            P L ER++NEEE+R+L ELAK++EG+ R +GMHAGGVLIAP K+ +FCP+Y+  G   + 
Sbjct: 483  PILKERLENEEELRELWELAKKLEGLTRGIGMHAGGVLIAPGKITDFCPVYQAAGDDAVP 542

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +S  DKDD+E+IGL+KFDFLGL  L+I+D  + +IK ++    +  LN L   D   Y +
Sbjct: 543  VSMLDKDDVEQIGLVKFDFLGLRNLTIIDLAVKYIKALDP-AFDTDLNLLEFTDPAAYQI 601

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHG-E 658
            L+KANT AVFQLES GMK +L++ KPD FE+IIA+++LYRPGP+   ++ +F  RK G +
Sbjct: 602  LQKANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLGSGMVDDFILRKAGKQ 661

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P     L  TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM EHR
Sbjct: 662  EVDYFHPDLTACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMAEHR 721

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
                 GA   G     A ++F+ + KFA YGFNKSH  AYA++SY TA+LK H+ + FMA
Sbjct: 722  GKIAQGAAAKGYDPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSYQTAWLKAHHCAAFMA 781

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAI 838
            A +S  +D+T+++K+   D+I    L  LPP++N S Y F P+   D +H  IRY LGA+
Sbjct: 782  ATMSSELDNTDQLKVFYDDSIAN-KLKFLPPDVNESFYRFVPV---DRQH--IRYALGAV 835

Query: 839  KGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYML 897
            KGTG++ +E IV  R+  G FT+LFDF +R DK+ +N+R I SLI +GAFD     R  L
Sbjct: 836  KGTGEAAVEHIVAVRQEGGPFTDLFDFCRRTDKRTVNKRTIESLIRAGAFDAIEPNRAKL 895

Query: 898  VASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFC 957
             A++ +A++ AE+     NQ  LF   D ++    +  V+V  W    +L EEK  +G+ 
Sbjct: 896  FANVGLAMEAAEQEAANANQGGLFDMFDADSAPT-VEMVEVKPWPPAVQLAEEKLAIGYY 954

Query: 958  LSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSN 1016
            LS H F  YE E+R FI   LS + P      ++G +T L+ K   RGK+  I +DD S 
Sbjct: 955  LSGHPFSAYEKEVRGFIKTPLSRITPRKEPQLIAGFVTGLRTKVGNRGKMAFIQLDDGSA 1014

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
              EV + ++ ++ N+  L+E+ +L++ GKV ED F   +RI A+KI+++  AR  Y +  
Sbjct: 1015 KREVSVFSESFDANRAKLREDTVLVIEGKVSEDSFNGGLRIIADKIYELGEARSRYARSL 1074

Query: 1077 SVMFNRTFNISILKKILLRFKCKN-GLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLA 1135
            ++  N   +++ L+  L  F+ ++ G P  L Y  N   K ++  P  + V+  D L LA
Sbjct: 1075 ALQINGNADVARLRTTLGPFRSEDAGCPVRLSYN-NGLAKGDLLLPPEWGVRLDDGLLLA 1133

Query: 1136 L 1136
            L
Sbjct: 1134 L 1134


>gi|121605816|ref|YP_983145.1| DNA polymerase III subunit alpha [Polaromonas naphthalenivorans CJ2]
 gi|120594785|gb|ABM38224.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2]
          Length = 1173

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/1102 (51%), Positives = 752/1102 (68%), Gaps = 35/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+H+E+S++DG  RI++++ AAA D QPALAITDLSNLFG +KFYK     G+KP+
Sbjct: 5    FVHLRIHTEFSVVDGTNRIDEIVAAAAADQQPALAITDLSNLFGTVKFYKEGRKTGVKPL 64

Query: 65   IGCDVWI--TNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            IG D+W+    +      SRLLLLV+++ GYL LCEL+++A+ +N+   +A ++++WL++
Sbjct: 65   IGADIWLEAPGKEAGAPASRLLLLVQDSQGYLNLCELITRAWTKNVVRDQAVVKLQWLQE 124

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLIALSGA  G +G A+  G +  A   A   S +FP  FY+E+QR   P     
Sbjct: 125  --LNEGLIALSGAQRGAVGQALVQGDSARAMECALHLSGMFPRRFYLELQRSGHPEDERH 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+ + LP+VATHP+QFL   ++ AHE R CI+EGEIL N +R++KFT+EQ FK
Sbjct: 183  VTAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCISEGEILGNARRVRKFTREQYFK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPK----NININDFLISKS 298
            +  +M  LF D+PSA+ NT+EIAKRC+L LE GKP LP+FPTP+     +   D+    S
Sbjct: 243  SADQMKALFADVPSALANTVEIAKRCSLTLELGKPMLPEFPTPEVNGSRMPPEDYFRHTS 302

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
              GL++RLL+LY +P     ++  Y  RL+FEI TI+KM F GYFLIV DFIQWAKNN  
Sbjct: 303  FEGLEERLLHLYPNPAQRDAKRPEYVARLEFEINTILKMGFPGYFLIVGDFIQWAKNNGC 362

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI 
Sbjct: 363  PVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQSNRDRVID 422

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-- 476
            YVKD+YG  AVSQIVTFGTMAA+ AIRDVGRVLD  Y FCD ISKLIP KPG+ +TL   
Sbjct: 423  YVKDKYGHAAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQAVTLQLV 482

Query: 477  -----------NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSK 525
                        A++ EP LA+R   EE+V  L++LA+++EG+ RNVGMHAGGVLIAP K
Sbjct: 483  PADRKKNDKMVYALEAEPVLADRESKEEDVHTLLDLARKLEGLTRNVGMHAGGVLIAPGK 542

Query: 526  LINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN 585
            L +FCPLY Q G T  +SQ+DK+D+E IGL+KFDFLGL TL+IL+    FI        +
Sbjct: 543  LTDFCPLYLQPGSTSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFIIARYPAQKD 602

Query: 586  FSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM 645
            F    LPL+D   Y L    NT AVFQ ES GM+ MLK+A+PD  E++IA+ +LYRPGPM
Sbjct: 603  FKFEDLPLDDARVYRLFADGNTEAVFQFESIGMQRMLKDARPDRLEDLIAMNALYRPGPM 662

Query: 646  DLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            DLI  +  RK G E   YPDPR K +L ETYGIMVYQEQVMQ AQILGGYSLG AD+LRR
Sbjct: 663  DLIPTYIARKQGKEVPEYPDPRVKPMLEETYGIMVYQEQVMQTAQILGGYSLGGADMLRR 722

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKK   EM +HR+ F+ GA   GL++ KA+E+F+ +EKFAGYGFNKSH+ AYALL+Y+
Sbjct: 723  AMGKKDEKEMAQHREIFRKGAGINGLAQEKADEVFDLMEKFAGYGFNKSHSAAYALLAYH 782

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TA+LK H+ + F AAN+++ MDDT+K+KIL  DA K  GLS   P+IN   Y F PI   
Sbjct: 783  TAWLKVHFPAEFFAANMTVEMDDTDKLKILFGDAQK-MGLSFEVPDINQGDYRFEPITA- 840

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLIN 883
                K +RYGLGAIKGTG+  I AIV  RK  G FT+LFDF  R+D+  +N+R + +LI 
Sbjct: 841  ----KSVRYGLGAIKGTGQQAIAAIVAARKEGGPFTSLFDFCVRVDRSKMNKRTVEALIK 896

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLK-EYLNYVKVPSWS 942
             GAFD  +  R  L+AS + A   A  T+   NQ  LF   D++    +    V++P + 
Sbjct: 897  GGAFDSLHLNRAELLASSERAFDFAAATQANANQGGLFDMSDSHAASTQEPELVEMPMFG 956

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY-SCTVSGIITELKLKTT 1001
             K  L+ EK  +GF LS H+F   E E+RQF    + ++  +  S  ++GI+T+L++   
Sbjct: 957  VKARLVLEKTAIGFYLSGHLFDEVEQEVRQFAKRSIEDMSESRDSQLLAGIVTDLRIING 1016

Query: 1002 YRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKV--LEDRFLKNIRINA 1059
             RGK++I  +DD ++ +EV ++   +  N+N+LKE+EL+IV G +    +RF +  +I  
Sbjct: 1017 NRGKLIIFKLDDKTDVLEVSVDEATFNANRNLLKEDELVIVQGTLQGASERFGRRFKIT- 1075

Query: 1060 EKIFDINVARILYGKKFSVMFN 1081
             +++D+  AR  +GK   V  N
Sbjct: 1076 -QVWDLESARCRFGKYLRVAVN 1096


>gi|347540826|ref|YP_004848251.1| DNA polymerase III subunit alpha [Pseudogulbenkiania sp. NH8B]
 gi|345644004|dbj|BAK77837.1| DNA polymerase III, alpha subunit [Pseudogulbenkiania sp. NH8B]
          Length = 1147

 Score = 1094 bits (2830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/1141 (48%), Positives = 775/1141 (67%), Gaps = 17/1141 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSE+S+ DG++R++D ++ A     PA+ ++DL NLFG++KFYK+    GIK
Sbjct: 4    PRFVHLRLHSEFSVYDGIVRLDDAVKRAKKHGMPAIGMSDLMNLFGMVKFYKACRGNGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+  D  I+N+ +  KPSRLLL  KN  GYL+LC+LL++A + N   GRAE++ EWLE 
Sbjct: 64   PIVSVDALISNDDDRDKPSRLLLTAKNRAGYLRLCDLLTQAVLHNQYRGRAELKREWLE- 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            N     LI LSGAHLGD+G+A+ NG+ D+AE  AR W+ +FPDNFY+E+QR   P +   
Sbjct: 123  NGDNSQLICLSGAHLGDVGMALANGQRDVAERRARYWAGLFPDNFYLEVQRLDNPQIEGV 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ + +A    LP+VATHPIQF+   +F AHE R CIAEG  L + +R K F + Q F 
Sbjct: 183  VQQTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKRRPKNFAECQYFL 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EMI+ F+DIP A++N++EIA+RCN+ ++ GK  LP FPTP+ + ++D+L+  SK GL
Sbjct: 243  STEEMIERFHDIPEALENSVEIARRCNITVQLGKNYLPDFPTPEGMTLDDYLVHLSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY DPE+   E+ RY  RL+ E +TI++M F GYFLIV+DFI WAKNN  PVGP
Sbjct: 303  ETRLEKLYPDPEVRAAERPRYDARLKIECDTIVQMGFPGYFLIVADFIVWAKNNGCPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVA+SL ITDIDPL+Y LLFERFLNP R+SMPDFD+DFC + R RVI+YV+ 
Sbjct: 363  GRGSGAGSLVAFSLGITDIDPLAYALLFERFLNPERVSMPDFDVDFCQDNRYRVIEYVRQ 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG +AVSQI TFGTMAAK  +RDVGRVLDL Y FCD +SKLIP  PGK  +L +A++ E
Sbjct: 423  KYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIPAAPGKQYSLDDAVEME 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI- 541
            P L ER++NEEE+R+L ELAK++EG+ R +GMHAGGVLIAP K+ +FCP+Y+  G   + 
Sbjct: 483  PILKERLENEEELRELWELAKKLEGLTRGIGMHAGGVLIAPGKITDFCPVYQAAGDDAVP 542

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +S  DKDD+E+IGL+KFDFLGL  L+I+D  + +IK ++    +  LN L   D   Y +
Sbjct: 543  VSMLDKDDVEQIGLVKFDFLGLRNLTIIDLAVKYIKALDP-AFDTDLNLLEFTDPAAYQI 601

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHG-E 658
            L+KANT AVFQLES GMK +L++ KPD FE+IIA+++LYRPGP+   ++ +F  RK G +
Sbjct: 602  LQKANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLGSGMVDDFILRKAGKQ 661

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P     L  TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM EHR
Sbjct: 662  EVDYFHPDLTACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMAEHR 721

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
                 GA   G     A ++F+ + KFA YGFNKSH  AYA++SY TA+LK H+ + FMA
Sbjct: 722  GKIAQGAAAKGYDPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSYQTAWLKAHHCAAFMA 781

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAI 838
            A +S  +D+T+++K+   D++    L  LPP++N S Y F P+   D +H  IRY LGA+
Sbjct: 782  ATMSSELDNTDQLKVFYDDSVAN-KLKFLPPDVNESFYRFVPV---DRQH--IRYALGAV 835

Query: 839  KGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYML 897
            KGTG++ +E IV  R+  G FT+LFDF +R DK+ +N+R I SLI +GAFD     R  L
Sbjct: 836  KGTGEAAVEHIVAVRQESGPFTDLFDFCRRTDKRTVNKRTIESLIRAGAFDAIEPNRAKL 895

Query: 898  VASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFC 957
             A++ +A++ AE+     NQ  LF   D ++    +  V+V  W    +L EEK  +G+ 
Sbjct: 896  FANVGLAMEAAEQEAANANQGGLFDMFDADSAPT-VEMVEVKLWPPAVQLAEEKLAIGYY 954

Query: 958  LSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSN 1016
            LS H F  YE E+R FI   LS + P      ++G +T L+ K   RGK+  I +DD S 
Sbjct: 955  LSGHPFSAYEKEVRGFIKTPLSRITPRKEPQLIAGFVTGLRTKVGNRGKMAFIQLDDGSA 1014

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
              EV + ++ ++ N+  L+E+ +L++ GKV ED F   +RI A+KI+++  AR  Y +  
Sbjct: 1015 KREVSVFSESFDANRAKLREDTVLVIEGKVSEDSFNGGLRIIADKIYELGEARSRYARSL 1074

Query: 1077 SVMFNRTFNISILKKILLRFKCKN-GLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLA 1135
            ++  N   +++ L+  L  F+ ++ G P  L Y  N   K ++  P  + V+  D L LA
Sbjct: 1075 ALQINGNADVARLRTTLGPFRSEDAGCPVRLSYN-NGLAKGDLLLPPEWGVRLDDGLLLA 1133

Query: 1136 L 1136
            L
Sbjct: 1134 L 1134


>gi|389872655|ref|YP_006380074.1| DNA polymerase III subunit alpha [Advenella kashmirensis WT001]
 gi|388537904|gb|AFK63092.1| DNA polymerase III subunit alpha [Advenella kashmirensis WT001]
          Length = 1154

 Score = 1093 bits (2827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1142 (46%), Positives = 770/1142 (67%), Gaps = 31/1142 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DG  RI++++ AAA   QPA+A+TDLSNLFG+IKFYK+A  KGIKPI GCDVW+ NE 
Sbjct: 1    MVDGTARISELVAAAAAYSQPAIALTDLSNLFGLIKFYKAARGKGIKPIAGCDVWLANEQ 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
            +  KP R LLLV+N  GYL LCE+LS+A+  N   GRAE++ EWLE    Q GLI LSG 
Sbjct: 61   DRDKPFRALLLVQNRQGYLALCEVLSRAWTANQYKGRAELQREWLEN---QPGLIMLSGG 117

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              GD+G A+  GR D AE  ARRW+  FP +++IE+QR         +Q  + +A+ ++L
Sbjct: 118  MAGDVGQALLAGRVDQAEALARRWAAWFPRSYFIELQRTGPQADERYVQLAMQLAARLDL 177

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VATHP+QF +  +F  HE R CI++GE+L N  R ++F+++Q   + ++M   F D+P
Sbjct: 178  PVVATHPVQFTRPEDFRMHEARVCISDGELLGNKSRTRRFSEDQYVLSSAQMASKFADVP 237

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
            SAI NT+EIA+RC+L L  GKP LP FPTP N +++++L+  S+ GL+ RL  LY D + 
Sbjct: 238  SAIANTVEIARRCSLTLSLGKPHLPDFPTPDNSSLDEYLVKLSEEGLEIRLKQLYPDDQE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             +  +  Y+ RL+ E +TII M F GYFLIV+DFI W K N +PVGPGRGSGA SLVAY+
Sbjct: 298  REKARPAYQDRLKLECKTIIGMGFPGYFLIVADFINWGKQNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + R++VI+YVK++YG+DAVSQI TF
Sbjct: 358  LGITDLDPLRYDLLFERFLNPERVSMPDFDIDFCQDNREKVIEYVKEKYGRDAVSQIATF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GT+ AK  +RDVGRVL+L YS CD +SKLIPF P    +L+  ++EEP+   R  N+EEV
Sbjct: 418  GTLGAKAVVRDVGRVLELPYSLCDGLSKLIPFNPANPWSLAKTLEEEPEFRRRYDNDEEV 477

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGIISQYDKDDIEEIG 554
            + +++LA+ +EG+ RNVGMHAGGVLIAP KL +FCPLY Q G  T ++SQYDKDD+E  G
Sbjct: 478  KAIVDLARPLEGLTRNVGMHAGGVLIAPGKLTDFCPLYCQPGSDTSVVSQYDKDDVEAAG 537

Query: 555  LIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLE 614
            L+KFDFLGL  L+ILD  + ++++ N    +F +  L L+D   Y +L + NT AVFQLE
Sbjct: 538  LVKFDFLGLRNLTILDWAVRYVRRFNPSMRDFDIMSLSLDDPGAYRILCEGNTTAVFQLE 597

Query: 615  SQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGEY-FNYPDPRTKDVL 671
             +GMK +LK+  P+ FE+IIA+++LYRPGP++  ++ +F  RKHG    +Y  P  +  L
Sbjct: 598  GRGMKELLKKLLPNTFEDIIAVLALYRPGPLESGMVDDFVNRKHGRAEVDYFHPSLESTL 657

Query: 672  SETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLS 731
              TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKKK  EM +HR+ F+ GA++ G  
Sbjct: 658  RSTYGVIVYQEQVMLISQIVGGYSLGGADLLRRAMGKKKAEEMAKHRELFEKGAVEKGYD 717

Query: 732  KHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKI 791
               A  +F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK H+ + F+AA +S  MDDT+K+
Sbjct: 718  GDLAVRLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAHHPAEFIAATMSSDMDDTDKV 777

Query: 792  KILVKDAIKTCGLSILPPNINLSKYYFFPI----IESDGKHKKIRYGLGAIKGTGKSTIE 847
            +I  +DA+   G+++LPP++N S Y F P+    + +    + IR+GLGA+KGTG+  +E
Sbjct: 778  QIFWRDALDN-GVAVLPPDVNESVYRFEPVEDDAMRAGKPPRTIRFGLGAVKGTGQGAVE 836

Query: 848  AIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALK 906
             I+  R+ G  F +L+DF KR+++  +NRR + +LI +GAFD     R  L+A++  A+ 
Sbjct: 837  EILRAREAGGPFLDLYDFCKRVNRHTVNRRTMEALIRAGAFDELERNRAALLAALTHAID 896

Query: 907  NAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIY 966
             A++  +  +Q+SLF +D    +++ +   +VP W+   ELIEEK  LGF  S H+F ++
Sbjct: 897  AADQADRSADQVSLFGDDSGAIVQDQV--ARVPPWNLHTELIEEKNALGFYFSHHLFDVW 954

Query: 967  ETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYR---------GKILIIVIDDNSN 1016
              E+R+F P  LS +  +     V+G++   +   + R          ++  +++DD S 
Sbjct: 955  RDEVRRFAPTKLSGINESRDAQWVAGVLIGQRFFASNRKSPGQPEADDRLYFLLLDDGSA 1014

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
             VE++    +YE N++ILK + L+I   K   +RF   +RI+A+ ++D+  AR    +  
Sbjct: 1015 QVEIMCPGSVYELNRHILKSDSLVIARIKAKVNRFNGGLRISADSLYDLQKAREERARCL 1074

Query: 1077 SVMFNRTFNISILKKIL--LRFKCKNGLPFVL----YYCINKSIKYEMKFPLNYKVQPID 1130
             +      ++S+LK +L   R + +NG+P V     Y    +  K +++    ++V+  D
Sbjct: 1075 QIEIADGMSVSMLKSLLNPYRAEPENGIPGVRVQLSYVSARQGYKCDIELGEEWRVRMAD 1134

Query: 1131 DL 1132
             L
Sbjct: 1135 SL 1136


>gi|358636312|dbj|BAL23609.1| DNA polymerase III, alpha subunit [Azoarcus sp. KH32C]
          Length = 1164

 Score = 1093 bits (2826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1092 (48%), Positives = 752/1092 (68%), Gaps = 23/1092 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI DG+++++  I  AA D  PAL I+DL+NLFG++K YK A  KGIK
Sbjct: 7    PRFVHLRLHSEYSISDGIVQVDQAIAKAAADGMPALGISDLANLFGMVKLYKGARGKGIK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D WITNE+E  KP R+LL+ +N  GY Q+CELL++AY++N    RAE+R EW   
Sbjct: 67   PVIGVDAWITNEVERDKPFRVLLICRNRKGYGQMCELLTRAYLDNKYRSRAEMRREWFAD 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                D L+ LSGA  G+IG A+ NG  ++A+  A  W+ +FP  FYIE+QR   P     
Sbjct: 127  GGASD-LLCLSGAMRGEIGQALMNGNTELADRLASEWAALFPGGFYIELQRAGHPGTEAY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            ++Q + +A+ + LP+VATHP+QFLK  +F AHE R CIA+G +L++ +R + FT EQ FK
Sbjct: 186  VRQAVLLAARLGLPVVATHPVQFLKPEDFKAHEARVCIAQGYVLADKRRPQDFTPEQYFK 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++N++EIA+RC+L ++ GK  LP+FPTP+ + ++DFL++++K GL
Sbjct: 246  SQDEMCELFADIPEALENSVEIARRCSLTVQLGKNFLPQFPTPEGMTLDDFLVAEAKAGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY D    + ++  Y+ RL+FE +TII+M F GYFLIV+DFI W K N +PVGP
Sbjct: 306  EVRLQELYPDEAERERQRPTYEARLKFETDTIIQMGFPGYFLIVADFINWGKQNGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL+Y LLFERFLNP R+SMPDFDIDFC + R RVI+YV++
Sbjct: 366  GRGSGAGSLVAYSLRITDLDPLAYALLFERFLNPERVSMPDFDIDFCQDNRYRVIEYVRE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYGKDAVSQI TFGTMA+K  +RDVGRVLDL Y  CD +SKLIP +  K ++L+ A + E
Sbjct: 426  RYGKDAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIPIEGAKPVSLAKAYEME 485

Query: 483  PQLAERIK---NEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
             Q+ E +    + E V++L +LA+ +EG+ RNVGMHAGGVLIAP KL +FCPLY  +G  
Sbjct: 486  SQIGEMMHDGNDGESVQELWKLAEPLEGLSRNVGMHAGGVLIAPGKLTDFCPLYIADGED 545

Query: 540  GI-ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
               +SQ+DKDD+E +GL+KFDFLGL  L+I++  I +++++  +  N  L  LP  D   
Sbjct: 546  ATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELAIEYVERLTGEKPN--LAALPFTDPAA 603

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKH 656
            Y +LK+ANT A+FQ+ES GMK +LK+  PD FE+IIA+++LYRPGP+   ++ +F  RK 
Sbjct: 604  YQILKEANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKK 663

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+   +Y  P  K  L  TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM 
Sbjct: 664  GQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            +HR+   +GA + G     A ++F+ + KFA YGFNKSH  AYA+++Y+TA+LK H+ + 
Sbjct: 724  KHRETIADGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYHTAWLKAHHCAA 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  +D+T+ IKI  +D+I   GL+ILPP++N S + F P        K IRYGL
Sbjct: 784  FMAATMSADLDNTDTIKIFFEDSIAN-GLTILPPDVNASDFRFVPT-----DRKTIRYGL 837

Query: 836  GAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF---- 890
            GA+KG G+  + +I+  R + G F +LFDF  R+D++ +NRR+I +LI +GAFD      
Sbjct: 838  GAVKGVGEPAVRSILAARAEAGPFKDLFDFCARVDRRAVNRRVIEALIRAGAFDLIEPSG 897

Query: 891  NEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            N  R  L+A++ +A++ AE+      Q  LF +           YV    W++++ L EE
Sbjct: 898  NRDRARLIATVSLAMEAAEQAAANAMQGGLF-DMVPEAAGAAPQYVAARPWTERERLKEE 956

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKILII 1009
            K  +GF LS H F  ++ E+R+FI   L+E++P+     ++G++T++++K T RGK+  +
Sbjct: 957  KTAIGFFLSGHPFNSFKKEVRRFIRRSLAEIEPSRDLVMMAGVVTDVRIKMTARGKMAFV 1016

Query: 1010 VIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
            ++DD S   EV + ++ Y+  +  +  +E+L+V GKV  D F    RI A+K+  +  AR
Sbjct: 1017 ILDDGSQVREVSVFSENYDNQRGKIVTDEVLVVEGKVSNDDFTGGYRIIADKLLTLGEAR 1076

Query: 1070 ILYGKKFSVMFN 1081
              + K   +  N
Sbjct: 1077 SRFAKALQISVN 1088


>gi|438000230|ref|YP_007183963.1| DNA polymerase III subunit alpha 1 [Candidatus Kinetoplastibacterium
            blastocrithidii (ex Strigomonas culicis)]
 gi|451812784|ref|YP_007449237.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            blastocrithidii TCC012E]
 gi|429339464|gb|AFZ83886.1| DNA polymerase III subunit alpha 1 [Candidatus Kinetoplastibacterium
            blastocrithidii (ex Strigomonas culicis)]
 gi|451778753|gb|AGF49633.1| DNA polymerase III subunit alpha [Candidatus Kinetoplastibacterium
            blastocrithidii TCC012E]
          Length = 1159

 Score = 1092 bits (2825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1140 (49%), Positives = 767/1140 (67%), Gaps = 28/1140 (2%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
             F+HLR+HSE+SI+DG++RI ++I    +  QPA+A+TDLSN+FGIIKFYK+A   GIKP
Sbjct: 7    SFVHLRVHSEFSIVDGIVRIEELINLVKDSDQPAVALTDLSNVFGIIKFYKAARASGIKP 66

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IIGCDVW+TN+    +P R+LLLV N+ GYL LC LL+K+++ N   GR E+R EWL   
Sbjct: 67   IIGCDVWLTNDKNRDRPFRVLLLVCNHEGYLNLCSLLTKSFLCNQYNGRVELRKEWLSG- 125

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
              Q+GLI LSG  LGDI  A++     +A + A++W  +FP++FYIE+QR   P  +   
Sbjct: 126  --QNGLIVLSGGILGDIAYALEINNQVLALDLAKQWKLMFPNSFYIELQRAGFPGEDNYN 183

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
               + +AS +NLP+VATHPIQFL+ +EF +HEVR CIAEG  LS+ KR+ +F +EQ F  
Sbjct: 184  HMVLELASKLNLPVVATHPIQFLRPSEFQSHEVRVCIAEGSHLSDPKRVSRFREEQYFLN 243

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              +M  +F DIPSAI NT+EIAKRC+L L  G P LPKF      +++D+LI  ++ GLK
Sbjct: 244  SEKMFNMFSDIPSAILNTVEIAKRCSLTLRLGIPNLPKFEIDAKYSLDDYLILMAEMGLK 303

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            +R   L  +    K  K  Y +RL+ E  TI +M F+GYFLIV DFI W KNN +PVGPG
Sbjct: 304  RRFDFLGNN----KINKKIYHERLREECGTINQMGFAGYFLIVQDFINWGKNNGVPVGPG 359

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+L ITDI+P+ Y+LLFERFLNP R+SMPDFDIDFC + RDRVI YVK +
Sbjct: 360  RGSGAGSLVAYALGITDINPMDYDLLFERFLNPERVSMPDFDIDFCQDNRDRVIDYVKSK 419

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG DAVSQI TFGT  AK  IRDVGRVL + YS CD +SKLIPF   +  TL   +  + 
Sbjct: 420  YGHDAVSQIATFGTFGAKAVIRDVGRVLGIPYSLCDGLSKLIPFSVSEQWTLDKVLSSDA 479

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM-TGII 542
                R + EEEV+ LI++AK +EG+ RNVGMHAGGVLIAP KL +FCPLY Q G    ++
Sbjct: 480  IFKNRYEKEEEVKTLIDIAKPLEGLARNVGMHAGGVLIAPGKLTDFCPLYCQPGQENSLV 539

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQ+DKDD+E  GL+KFDFLGL  L++LD +  ++++ N    +FS+  LPL+DK+TY+LL
Sbjct: 540  SQFDKDDVESSGLVKFDFLGLRNLTVLDWSASYVRQCNKGMDDFSVISLPLDDKETYDLL 599

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EY 659
               NTVAVFQLES+GM+ +LK  KP  FE+IIA+++LYRPGP++  ++ +F  RKHG   
Sbjct: 600  SSGNTVAVFQLESKGMRELLKRLKPSNFEDIIAVLALYRPGPLESGMVNDFVSRKHGVSS 659

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
             NY     ++VL  TYG++VYQEQVM I+QI+GGYSLG ADLLRRA+GKK   EM +HR 
Sbjct: 660  INYFHSDLENVLKSTYGVIVYQEQVMLISQIIGGYSLGSADLLRRAMGKKDPEEMAKHRI 719

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GA+  G     A ++F+ +EKFAGYGFNKSH+ AYAL++Y TA+LKTH+ + F +A
Sbjct: 720  IFEKGAVNNGYRSDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKTHHPAEFFSA 779

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE--SDGKHKKIRYGLGA 837
             LS  MDDT+KI+++ +DA K   + ILPP+INLS + F P++    + K   IRYGLGA
Sbjct: 780  TLSSDMDDTDKIQVIFRDAKKN-NIKILPPDINLSSFRFEPVVNFTDENKEIAIRYGLGA 838

Query: 838  IKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            IKG GKS I+ +V  RK  G F+++FDF  R+  K +NRR I SLI SGAFD  N  R  
Sbjct: 839  IKGAGKSAIDDVVRSRKNNGPFSDIFDFCYRM-FKILNRRAIESLIKSGAFDFSNSNRAE 897

Query: 897  LVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVK-VPSWSKKQELIEEKKVLG 955
            ++AS+++AL+ AE     +NQ SLF++D    +      +  +  W    +L EEK  +G
Sbjct: 898  VLASLNIALEIAEHRNTNVNQSSLFEDDYEQEIPRLRKSIDNIAEWDLLNKLTEEKTAMG 957

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPT-YSCTVSGIITELKLKTTYRGKILIIVIDDN 1014
            +  S H+F  +  EIRQ IP  LS+++ +  S  V GI+  +K  TT RGK+++ +IDD+
Sbjct: 958  YHFSGHLFEYWRDEIRQIIPTTLSKIRSSKQSQLVCGILVSIKTITTRRGKMVLALIDDD 1017

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            +N VE++ +   YEKNKN L+E+ L+     V +D +  + RI  E+I+ I+  R    K
Sbjct: 1018 TNQVEIVTHQDFYEKNKNDLREDNLIAAKVIVSDDSYSNSFRIVVEQIYSIDDIRSYMAK 1077

Query: 1075 KFSVMFNRTFNISILKKILLRF-------KCKNGLP-FVLYYCINKSIKYEMKFPLNYKV 1126
               +  +   N+  L+ +L          KC+  +P +V Y  ++      +K   N++V
Sbjct: 1078 AVKISIDSDINLESLQSLLKSICSKKEQDKCR--VPVYVAYTNLDGKFSCTVKLGDNWRV 1135


>gi|217970003|ref|YP_002355237.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T]
 gi|217507330|gb|ACK54341.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T]
          Length = 1174

 Score = 1092 bits (2825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1166 (46%), Positives = 779/1166 (66%), Gaps = 34/1166 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYSI DG+++++  I AAA D  PAL ++DL+NLFG++KFYK A  KGIK
Sbjct: 18   PRFVHLRLHSEYSITDGIVQLDQAIAAAAADGMPALGVSDLANLFGMVKFYKGARGKGIK 77

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D WI NE E  KP R+LL+ KN  GY QLCELL++AY+EN + GRAE+R EW E 
Sbjct: 78   PIVGVDAWIRNEAERDKPQRVLLICKNRAGYGQLCELLTRAYLENKHRGRAEMRREWFE- 136

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            N     L+ LSGA  GDIG A+  G   +AE  A  W+++FPD FYIEIQR   P     
Sbjct: 137  NGAASALLCLSGAMSGDIGAAIAAGNLALAEQLAADWARLFPDAFYIEIQRAGHPGTESY 196

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I+  + +A  + LP+VATHP+QFLK+ +F AHE R CIA+G +L++ +R + FT+EQ  K
Sbjct: 197  IRHAVELAGRLGLPVVATHPVQFLKREDFKAHEARVCIAQGYVLADKRRPRDFTEEQYLK 256

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q+EM +LF D+P A++N +EIA+RC+L ++ GK  LP FPTP+ + ++DFL++++K GL
Sbjct: 257  SQAEMCELFADLPEALENAVEIARRCSLTVQLGKNFLPLFPTPEGMTLDDFLVAEAKKGL 316

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  LY  PE  + ++ RY++RL+FE +TII+M F GYFLIV+DFIQW KNN +PVGP
Sbjct: 317  EERLAQLYPHPEERERQRPRYEQRLKFETDTIIQMGFPGYFLIVADFIQWGKNNGVPVGP 376

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITDIDPL Y LLFERFLNP R+SMPDFDIDFC + R RVI+YV++
Sbjct: 377  GRGSGAGSLVAYSLKITDIDPLEYALLFERFLNPERVSMPDFDIDFCQDNRYRVIEYVRE 436

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYGKDAVSQI TFGTMA+K  +RDVGRVLDL Y  CD +SKLIP +  K ++L+ A + E
Sbjct: 437  RYGKDAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIPIEGAKPVSLNKAYEME 496

Query: 483  PQLAERIK---NEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            PQ+ E +    + E VR L  LA+ +EG+ RNVGMHAGGVLIAP KL +FCPLY  +G  
Sbjct: 497  PQIGEMMADGNDGESVRDLWSLAQPLEGLSRNVGMHAGGVLIAPGKLTDFCPLYIADGDD 556

Query: 540  GI-ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
               +SQ+DKDD+E +GL+KFDFLGL  L+I++  + ++ ++     +  L  L   D   
Sbjct: 557  ATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALEYVARLEGSRPD--LMSLGFEDPAA 614

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKH 656
            Y +LK ANT A+FQ+ES GMK +LK+  PD FE+IIA+++LYRPGP+   ++ +F  RK 
Sbjct: 615  YQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKK 674

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+   +Y  P  K  L  TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM 
Sbjct: 675  GQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKADEMA 734

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            +HR     GA + G     A ++F+ + KFA YGFNKSH  AYA+++Y+TA+LK H+ + 
Sbjct: 735  KHRATIAEGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYHTAWLKAHHCAA 794

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  +D+T+ +KI  +D +   G+ +LPP++N S Y F P+       K IRYGL
Sbjct: 795  FMAATMSSDLDNTDTVKIFYEDTLAN-GIKVLPPDVNASDYRFVPV-----DRKIIRYGL 848

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF---- 890
            GA+KG G+  + AI+    K G F +LFDF +R+D++ +NRR+I +LI +GA D      
Sbjct: 849  GAVKGVGEPAVRAILAAHEKGGDFRDLFDFCERVDRRMVNRRVIEALIRAGAMDTLPGHK 908

Query: 891  NEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
               R  L+A++ +A++ AE+      Q  LF +           + KV +W++++ L EE
Sbjct: 909  GLDRAQLMATVALAMEAAEQAAANAMQGGLF-DLMPEAAGAAPEFAKVRAWTERERLKEE 967

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITELKLKTTYRGKILII 1009
            K  +GF LS H F  ++ E+R+F+   L++L+P+   T+ +G++ E + K   RGK+  +
Sbjct: 968  KLAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRDITMLAGVVMEQRTKVGNRGKMAFV 1027

Query: 1010 VIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
            ++DD +   EV + +++ E ++  +  +E+L+V  KV  D F   +RINA+++  +  AR
Sbjct: 1028 LLDDGTEPREVTVYSEVLEASRGKIVTDEVLVVEAKVSNDDFSGGLRINADRLLTLGEAR 1087

Query: 1070 ILYGKKFSVMFNRTFNISI--------LKKILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
              + +  S+  +     S         L+ +L  F+ + G P  + Y  N + + E+   
Sbjct: 1088 SRFARALSLRIDGELAASGGAAGAAGKLQTLLEPFR-EGGCPIRVRY-RNAAAEAELPLG 1145

Query: 1122 LNYKVQPIDDLKLALINLGLYNAIIE 1147
              ++V+ +DD  L  +   L    +E
Sbjct: 1146 DGWRVR-LDDALLESLREWLPGEAVE 1170


>gi|375105112|ref|ZP_09751373.1| DNA-directed DNA polymerase III PolC [Burkholderiales bacterium
            JOSHI_001]
 gi|374665843|gb|EHR70628.1| DNA-directed DNA polymerase III PolC [Burkholderiales bacterium
            JOSHI_001]
          Length = 1168

 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1098 (50%), Positives = 754/1098 (68%), Gaps = 29/1098 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR H+E+S++DG LRI+D    A  D Q ALAITDL+NLFG +KFYK+   KG+KP+
Sbjct: 3    FVHLRTHTEFSVVDGTLRIDDAAGMARADGQVALAITDLANLFGAVKFYKACRGKGVKPL 62

Query: 65   IGCDVWIT--NEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            IG DVW+    E+ +K  SRL LLV+++ GY  L ELL++A+ +N+  G+A+++ +WL +
Sbjct: 63   IGVDVWMEPLAEVGDKNASRLALLVQDDAGYHHLSELLARAWTQNVQRGQAQLKWDWLAE 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                 GLI LSGA LG +G A+       A+  A + + +FP+ FYIE+QR   P+    
Sbjct: 123  --LGGGLICLSGADLGAVGTALLAADPARAKAVAHKLAGLFPNRFYIELQRGGLPHHEVH 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            ++  + +A+ + LP+VATHP+QF    +F AHE R C+AEGE L N KR+K+F +EQ FK
Sbjct: 181  VRAAVPMAAELKLPVVATHPVQFATPEDFEAHEARVCVAEGETLGNAKRVKRFNREQYFK 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP----KNININDFLISKS 298
            TQ++M  LF D+PSA+ NT+ IA+RCNL L  GKP+LP FPTP    K + + D+    S
Sbjct: 241  TQAQMEALFADVPSAVANTLAIAQRCNLSLVLGKPRLPDFPTPLVDGKPMPMEDYFRQLS 300

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
              GL++RLL LY D      ++ RY +RL+FE+ TI KM F GYFLIV+DFI WAK N  
Sbjct: 301  FEGLEERLLLLYPDVAKRDEQRARYVERLEFELATINKMGFPGYFLIVADFINWAKKNGC 360

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI 
Sbjct: 361  PVGPGRGSGAGSLVAYALKITDLDPLYYNLLFERFLNPERVSMPDFDIDFCQGNRDRVID 420

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN- 477
            YVKD+YG+DAVSQI TFGTMAAK A+RDVGRVL + Y   DSI+KLIP  PGK +TL+  
Sbjct: 421  YVKDKYGRDAVSQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPGKTVTLAKL 480

Query: 478  ----------AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLI 527
                      A KE P+L +R   EEEV +L+ LA +VEGI+RN+GMHAGGVLIAP K+ 
Sbjct: 481  PEKPDPGLIYARKEAPELEQREAAEEEVAELLSLATRVEGIVRNIGMHAGGVLIAPGKIT 540

Query: 528  NFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS 587
            +FCPLY+Q G    +SQYDKDD+E IGL+KFDFLGL TL+IL+    FI     K  +F+
Sbjct: 541  DFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKDFIVARRPKYKDFN 600

Query: 588  LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
               LPL+D   Y L  + +T AVFQ ES+GM+ ML++AKP   E++IAL +++RPGPM+ 
Sbjct: 601  YETLPLDDPRVYKLFSEGHTEAVFQFESRGMQGMLRDAKPSRLEDLIALNAMFRPGPMEN 660

Query: 648  IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            I +FC RKHG E   YP P    VLSETYGIMVYQEQVMQ AQ+LGGYSLG ADLLRRA+
Sbjct: 661  IPSFCARKHGREEVVYPHPLMAQVLSETYGIMVYQEQVMQAAQLLGGYSLGGADLLRRAM 720

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM EHR+ F++GA K  +   KA+EIF+ +EKFAGYGFNKSHA AYALL+Y+TA
Sbjct: 721  GKKKAEEMAEHRQIFRDGAAKKDIGPDKADEIFDLMEKFAGYGFNKSHAAAYALLAYHTA 780

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            ++K H ++ F AAN+++ MDDT+K+K+L+ DA K  G++  PP++N   Y F P+ +   
Sbjct: 781  WVKVHCTAEFYAANMTIEMDDTDKLKVLLNDA-KQFGVAFEPPDVNRGVYRFEPVDD--- 836

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSG 885
              K +RYGLGAIKGTG+  IEAIV  R+ G  F + FDF  R+D+  IN+R++ +LI +G
Sbjct: 837  --KLVRYGLGAIKGTGQGAIEAIVAAREAGGPFRSFFDFCGRVDRSRINKRVVEALIKAG 894

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDD-NNNLKEYLNYVKVPSWSKK 944
            AFD  +  R  L+AS+ +    A+      +Q  LF + D + +  +    V   +WS K
Sbjct: 895  AFDALHPDRAPLLASVGLGFDWADTQVAHAHQGGLFDDGDAHGSSTQEPALVAAETWSVK 954

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYR 1003
            + L +EK  LGF LS H+F   E E+R+F+   +++L  +     ++GI+ +L++    R
Sbjct: 955  ERLTQEKTALGFYLSGHLFEQSEDEVRRFVRRPIADLVDSRDPQLLAGIVGDLRIINGQR 1014

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
            G++ +  +DD S ++E + N +L E  +++L+++ELLIV GKV  DRF   +R+N   ++
Sbjct: 1015 GRVALFKLDDKSETIEAVANEELIESARDLLRDDELLIVQGKVQPDRFSGGLRLNVNAVW 1074

Query: 1064 DINVARILYGKKFSVMFN 1081
            D+  AR  +G+  SV  N
Sbjct: 1075 DLAGARARFGRHLSVALN 1092


>gi|71906199|ref|YP_283786.1| DNA polymerase III subunit alpha [Dechloromonas aromatica RCB]
 gi|71845820|gb|AAZ45316.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
          Length = 1156

 Score = 1088 bits (2815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1111 (48%), Positives = 744/1111 (66%), Gaps = 27/1111 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+++HLRLHSEYS+ DG++R+ D ++ AA D  PA+A+TDL NLFG++KFY  A  KG+K
Sbjct: 4    PRYVHLRLHSEYSVTDGIVRVGDAVKRAAGDSMPAMAMTDLGNLFGLVKFYTGARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI G DVWITN    +   RLLLLV+N  GY QLCELL+KAY+      RAEIR EW  +
Sbjct: 64   PIAGADVWITNPDAPEDAYRLLLLVRNRVGYQQLCELLTKAYLVEGRRDRAEIRREWFAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                DGLIALSGAHLGDIG A+ NG  D+A   A+ W  IFP  FY+E+QR+ QP     
Sbjct: 124  LG-SDGLIALSGAHLGDIGEALLNGNFDLAGERAKAWEAIFPGAFYLEVQRYGQPQQEAI 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +QQ  ++A  + LP+VATHPIQF+ + +F AHE R CIAEG +L +T+R K +T+EQ FK
Sbjct: 183  VQQTADLAGELGLPLVATHPIQFMNRDDFRAHEARVCIAEGYVLGDTRRPKLYTEEQYFK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ+EM++LF D+P A++NT+EIAKRCNL +  GK  LP FP P  +   ++L+ ++K GL
Sbjct: 243  TQAEMVELFADLPEALENTLEIAKRCNLTMTLGKNFLPDFPIPPGMTDGEYLVQEAKKGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY DPE+ +  +  Y +RL FE +TI++M F GYFLIV+DFI W K N +PVGP
Sbjct: 303  EVRLAELYPDPEVRQQRRPEYDERLVFECKTILQMGFPGYFLIVADFINWGKKNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITDIDPL Y LLFERFLNP R+SMPDFDIDFC + R RVI+YV++
Sbjct: 363  GRGSGAGSLVAYSLRITDIDPLEYALLFERFLNPERVSMPDFDIDFCQDNRWRVIEYVRE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG DAVSQI TFGTM++K  IRDVGRV  L YS CD ISKLIP    K ++L+ A+++E
Sbjct: 423  HYGADAVSQIATFGTMSSKAVIRDVGRVFGLPYSMCDRISKLIPIVQNKPVSLAEALEQE 482

Query: 483  PQLAERIKNE---EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM- 538
            PQL + ++ +   E +R+L +LA ++E + RNVGMHAGGVLIAP K+ +FCP+Y+  G  
Sbjct: 483  PQLKQMMEGDGDGETIRELFDLAGRLEDLTRNVGMHAGGVLIAPGKITDFCPIYQATGAD 542

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
               +SQ+DKDD+E+ GL+KFDFLGL  L+I++  + +I+++  +     L  L   D   
Sbjct: 543  ASPVSQFDKDDVEKAGLVKFDFLGLRNLTIIELAVEYIRRMTGE--KLDLMSLGFKDPAA 600

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKH 656
            Y +LK ANT A+FQ+ES+GMK +LK+  PD FE+IIA+++LYRPGP+   ++ +F  RK 
Sbjct: 601  YQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKK 660

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+   +Y  P     LS TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM 
Sbjct: 661  GQQKIDYFHPDLTACLSPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMA 720

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            +HR+    GA + G     A ++F+ + KFA YGFNKSH  AYA+++Y+TA+LK H+ + 
Sbjct: 721  KHRETIAQGAKEKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYHTAWLKAHHCAA 780

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  +D+T+ +KI  +D I    + +L P++N+S Y F P+         IRYGL
Sbjct: 781  FMAATMSSDLDNTDSVKIFYEDTIAN-KIKVLGPDVNVSNYRFEPV-----DRGTIRYGL 834

Query: 836  GAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF---- 890
            GA+KGTG+  +  I+  R + G F +LFDF  R DK+ +NRR   +LI +GAFD      
Sbjct: 835  GAVKGTGEQAVNVILKARAEGGPFKDLFDFCMRCDKRMVNRRTTEALIKAGAFDTIAPEI 894

Query: 891  ----NEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                   R  L+A++ VA+  AE+ ++   Q SLF   D  + +    YV V  W +K +
Sbjct: 895  APGKGADRCKLLATVGVAMDFAEQAERNAMQTSLFDMADVAD-EHAPEYVNVRPWDEKTK 953

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELKLKTTYRGK 1005
            L+EEK  LGF  S H +   + E+ +FI   L+ L+P     T++G++  ++ + T RGK
Sbjct: 954  LMEEKTALGFFFSGHPYNTCKKELSRFIRRPLNRLEPAKEMTTIAGLVVGVRTQMTRRGK 1013

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            +L + +DD +  VEV + N+L+E  +  +  +E+L++ GKV  D F    R+ A+K+  +
Sbjct: 1014 MLFVQLDDGTGMVEVSVFNELFEAERAKIVTDEVLVIEGKVSYDDFSGGNRVVADKLMTL 1073

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRF 1096
              AR  + +   +  N   +   LK +L  F
Sbjct: 1074 GEARARFARHLLLKMNGNADAQRLKSLLTPF 1104


>gi|226940314|ref|YP_002795388.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter
            hongkongensis HLHK9]
 gi|226715241|gb|ACO74379.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter
            hongkongensis HLHK9]
          Length = 1147

 Score = 1086 bits (2809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1141 (47%), Positives = 765/1141 (67%), Gaps = 17/1141 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLRLHSE+S+ DG+ RI D ++ AA +  PAL ++DL NLFG++KFYK+   KG+K
Sbjct: 4    PRFIHLRLHSEFSVTDGITRIGDAVKRAALERMPALGLSDLMNLFGMVKFYKACLGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+  D W+ N  +  +PSR LL+  N  GY +L ELL+ AY  N   GRAE++ EWL +
Sbjct: 64   PIVAVDAWLENPADRDQPSRCLLIAMNTAGYHRLSELLTDAYRLNQYRGRAELQREWLTR 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
               ++ LI +SGA  GD G A+  G  ++A+  AR W++ FP   Y+EIQR  +P  +  
Sbjct: 124  EACEN-LIFVSGAQHGDTGQALLAGNLELAQALARDWAQRFPGRCYLEIQRTGKPEADTC 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
             ++ + +A    LP+VATHP+QFL + +F+AHE R CIAEGE+L N KR++ +T+EQ FK
Sbjct: 183  TERMLWLAGETGLPVVATHPVQFLDRDDFMAHEARVCIAEGEMLGNPKRVRHYTEEQYFK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM  LF D+P A++N++EIA+RCN+++  GK  LP FPTP  ++++D+LI +S+ GL
Sbjct: 243  STDEMAALFADVPEALENSVEIARRCNIEILLGKNFLPDFPTPDGLSLDDYLIKRSEEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             +R+  LY D    + E  RY++RL+FE++TII+M F GYFLIV+DFI WAK N  PVGP
Sbjct: 303  VERMQALYPDAGQREAEMPRYRERLKFELDTIIQMGFPGYFLIVADFINWAKANGCPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVA+S+ ITDI+PL Y LLFERFLNP R+SMPDFDIDFC + R RVI+YV++
Sbjct: 363  GRGSGAGSLVAFSIGITDINPLDYALLFERFLNPERVSMPDFDIDFCQDNRWRVIEYVRE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYG DAVSQI TFGTMAAK  +RDVGRVLDL YSFCD +SKLIP  PGK  +L +A++ E
Sbjct: 423  RYGADAVSQIATFGTMAAKAVVRDVGRVLDLPYSFCDGLSKLIPAAPGKQYSLDDAVEME 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG-MTGI 541
            P L ER++ EEEV QL  LAK++EG+ RN+GMHAGGVLIAP K+ +FCP+Y+  G     
Sbjct: 483  PILKERLEKEEEVSQLWALAKKLEGLTRNIGMHAGGVLIAPGKITDFCPMYQASGDDASP 542

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            +S  DK D+E++GL+KFDFLGL  L+I+D  + +IK ++    +  LN +P  D   Y +
Sbjct: 543  VSMLDKGDVEDVGLVKFDFLGLRNLTIIDLAVNYIKALD-PAFDLDLNHMPFTDPAAYRV 601

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHG-E 658
            L++ANT AVFQLES+GMK +L++ KPD FE+IIA+++LYRPGP+   ++ +F  RK G +
Sbjct: 602  LQQANTTAVFQLESEGMKKLLEKLKPDRFEDIIAVLALYRPGPLGSGMVDDFILRKAGKQ 661

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
              +Y  P     L  TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM +HR
Sbjct: 662  EVDYFHPDLTACLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMAKHR 721

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
              F  GA K G  K  A  +F+ + KFA YGFNKSH  AYA++SY TA+LK HY S FMA
Sbjct: 722  GIFCEGAEKKGYPKALAEHLFDLMAKFAEYGFNKSHTAAYAVVSYQTAWLKAHYPSAFMA 781

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAI 838
            A +S  +D+T+++++   D++    L  LPP+IN S Y F P+       ++IRY LGAI
Sbjct: 782  ATMSSELDNTDQLRVFYDDSLAN-QLEFLPPDINESVYRFVPV-----DARRIRYALGAI 835

Query: 839  KGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYML 897
            KGTG++ +E I   RK  G FT+LFDF +R DK+ +NRR I +LI +GAFD     R  L
Sbjct: 836  KGTGQAAVEHIEAVRKEGGRFTDLFDFCRRTDKRIVNRRTIEALIRAGAFDTLEPNRARL 895

Query: 898  VASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFC 957
            +A++++A+  AE+  +  NQ  LF   D +     +  ++V  W +   L EEK  +GF 
Sbjct: 896  IANVELAMTMAEQEAQNANQGGLFDLLDTSAAPA-VEMMQVRPWDEATRLTEEKTAIGFF 954

Query: 958  LSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSN 1016
            LS H F  +   +R+ +   L+ + P      ++G I  ++ K   RGK+  + +DD + 
Sbjct: 955  LSGHPFHAHADTVRRLVKTPLNRIAPKKEPQWLAGTIMGVRTKVGNRGKMAFVQLDDGTA 1014

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
             +EV   ++ ++  ++ LKE+ +LIV GKV +D +   +RI A++  D++ AR  + +  
Sbjct: 1015 KLEVSFFSESFDAARHKLKEDSILIVEGKVSQDDYSGGLRIIADQALDLSEARARFARYL 1074

Query: 1077 SVMFNRT-FNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLA 1135
             +       +   LK +L  F+   G P  L YC N + + +++   +++V+P D L  +
Sbjct: 1075 RLATPAAQLDAPRLKALLEPFRSAEGCPVRLDYC-NAAARCQLELDDSWRVRPDDALLAS 1133

Query: 1136 L 1136
            L
Sbjct: 1134 L 1134


>gi|350570023|ref|ZP_08938399.1| DNA-directed DNA polymerase III alpha subunit [Neisseria wadsworthii
            9715]
 gi|349797506|gb|EGZ51265.1| DNA-directed DNA polymerase III alpha subunit [Neisseria wadsworthii
            9715]
          Length = 1146

 Score = 1076 bits (2783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1157 (47%), Positives = 760/1157 (65%), Gaps = 25/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P ++ LRLH+E+SI DG +RI D ++ A +D  PAL ++DL N+FG++KFYK+    GIK
Sbjct: 4    PIYVPLRLHTEFSITDGTVRIKDAVKKAVSDGLPALGVSDLMNMFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R + +VKN++GYL+L ELL+ AY+ ++ N   AE+R  WL 
Sbjct: 64   PVAAADVWIENPAAPDKPFRAMFIVKNDSGYLRLSELLTAAYVGKDRNVDHAELRQTWLA 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
            +     GLI LSGAH G++G+ + NG  D A+  A++++  FP+ FY+E+QR  ++P   
Sbjct: 124  EGD-NSGLICLSGAHYGEVGVNLINGHPDAAKAAAQKYAAWFPNAFYLELQRLPERPQWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + IA+ ++LP+VATHP QFL + +F AHE R CIA G +L++ KR  +FT  Q 
Sbjct: 183  TSVSGSLEIAAELDLPVVATHPTQFLNQEDFSAHEARVCIAGGWVLADKKRPHEFTPSQY 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F +  +M + F D+P A+QNT+EIAKRCNL L  GK  LP FPTP  ++++D+L   S  
Sbjct: 243  FASPEQMAERFADLPEALQNTVEIAKRCNLTLTLGKNFLPLFPTPDGMSLDDYLTQLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y+ RL FE+  II+M F GYFLIV DFI WAKNN  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQARLDFELGIIIQMGFPGYFLIVQDFINWAKNNGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQSNRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG DAVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  + ++L  A+
Sbjct: 422  VREKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFGLCDRLSKLIPLEANRPVSLDKAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP++ E I++ E    L+ LAK++E + R +GMHAGGVLIAP K+ +F P+Y+ +   
Sbjct: 482  EMEPEIKELIES-EGAEDLMVLAKKLEDLTRGLGMHAGGVLIAPGKISDFSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      +N +PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQENIK--NTVGEEIDVNTIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  KIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQA 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FEYIHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA +  +S+ KA+EIF+ +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAKGAEEKNISRKKADEIFDYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    DA +  G+S LPP+IN S Y F P        K+IRY LGA+K
Sbjct: 779  TMSSELDNTDQLKHFYDDA-RANGISFLPPDINESDYLFTP-----NNQKQIRYALGAVK 832

Query: 840  GTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            G G+  +EAI+  RK  G F +L DF +R+DK ++N+R I SLI +GAFD  N  R ML+
Sbjct: 833  GVGEGAVEAIMQARKESGKFKDLLDFCERVDKAHLNKRTIESLIRAGAFDTLNTNRAMLI 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NAE+     NQ  LF  D   +  E +  V VP+W + Q+L EEK+V+GF L
Sbjct: 893  ANIDLAISNAEQKAANANQGGLF--DFAEDAIEAVQLVDVPAWGEAQKLAEEKQVVGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  +  E+RQF P+ L++LKP  S  V+G  T ++     RG+++   ++D S  V
Sbjct: 951  SGHPFGPFAKEVRQFAPVKLNKLKPQESVRVAGFATAVRSMMGKRGRLVFATLEDPSGRV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK--NIRINAEKIFDINVARILYGKKF 1076
            EV++  Q  E     LK + +LI+  KV  D +     +RI A  +  +  AR  + +  
Sbjct: 1011 EVMVTGQALELGSAELKADRVLIMECKVSRDDYGSEGGLRIIANSVMTLQQARERFARNL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCKN----GLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            ++ FN   +I     +L  ++  +     +P  +++  N   + E+     + V P  +L
Sbjct: 1071 TLRFNPQHDIEAAIAVLQSYRAADTHVPTVPVRVFFR-NDGAQGELNVGRQWHVTPKAEL 1129

Query: 1133 KLALIN-LGLYNAIIEY 1148
               L + LG Y+  + +
Sbjct: 1130 FDRLTDILGEYHLTVGW 1146


>gi|334132599|ref|ZP_08506356.1| DNA polymerase III, alpha subunit [Methyloversatilis universalis
            FAM5]
 gi|333442565|gb|EGK70535.1| DNA polymerase III, alpha subunit [Methyloversatilis universalis
            FAM5]
          Length = 1172

 Score = 1075 bits (2780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1124 (46%), Positives = 766/1124 (68%), Gaps = 26/1124 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSEYS++DG++ ++  ++AAA D  PALA++DL+N+F ++K YK+A  KG+K
Sbjct: 16   PPFVHLRVHSEYSVVDGIVTVDAAVKAAAKDGMPALALSDLANVFALVKLYKTARGKGVK 75

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI   DV+ITN+ E  KP RLLLL +N  GY  +C LL++AY+EN   GRAEIR +W E+
Sbjct: 76   PICAVDVYITNDAERDKPHRLLLLARNREGYGTICRLLTRAYLENKYRGRAEIRRDWFER 135

Query: 123  N-KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            + +   GLIALSGA  GD+G+A+  G  + A   A  W ++F   + IE+QR   PN   
Sbjct: 136  DAEGTAGLIALSGAMQGDVGVALLAGNMESARRAAAEWLRLFDGEYCIELQRAGHPNTEA 195

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             I     +AS +++P+VATHP+QF+ + +F AHEVR CIA+G +L++ +R ++FT++Q F
Sbjct: 196  YIADACALASELDIPVVATHPVQFMAQEDFKAHEVRVCIAQGYVLTDKRRPREFTEQQYF 255

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            KT +EM +LF DIP A+ N +EIA+RCNL L  GK  LP+FPTP  + I++F+I+++K G
Sbjct: 256  KTTAEMAELFADIPEALANAVEIARRCNLTLTLGKNYLPQFPTPPGMTIDEFMIAEAKDG 315

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L+KRL+ LY D  + + ++  Y+ RL+FE +TII+M F GYFLIV+DFI WAK N +PVG
Sbjct: 316  LEKRLVQLYPDEALREQKRPEYEARLKFECDTIIQMGFPGYFLIVADFINWAKKNGVPVG 375

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAYSL ITD+DPL+Y LLFERFLNP R+SMPDFD+DFC + R +VI+YV+
Sbjct: 376  PGRGSGAGSLVAYSLGITDLDPLAYALLFERFLNPERVSMPDFDVDFCQDNRWKVIEYVR 435

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
             +YG DAVSQI T+GTMA++  IRDVGRVLD+ Y+FCD +SKLIP    K ++L+ A ++
Sbjct: 436  QKYGADAVSQIATYGTMASRAVIRDVGRVLDMGYNFCDQLSKLIPVVQNKPLSLAEAREQ 495

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG-MTG 540
             PQLAER + EEEV +L+ L + +EG+ R VGMHAGGVLIAP KL +FCPLY+Q+G    
Sbjct: 496  APQLAEREQAEEEVAELLRLCEPLEGLTRGVGMHAGGVLIAPGKLTDFCPLYQQDGDDAS 555

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +SQ+DKDD+E IGL+KFDFLGL  L+I++  + +I+++  +  +  L  LP  D   Y 
Sbjct: 556  PVSQFDKDDVEAIGLVKFDFLGLRNLTIIELAVDYIERMTGERPD--LLSLPFTDPAAYQ 613

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHG- 657
            +LK ANT A+FQLES+GMK +L +  PD FE+IIA+++LYRPGP+   ++ +F  RK G 
Sbjct: 614  ILKDANTTAIFQLESEGMKKLLGKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKKGQ 673

Query: 658  EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
            +  +Y  P  +  LS TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM +H
Sbjct: 674  QAIDYFHPDLEACLSPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMAKH 733

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            R+    GA + G     A ++F+ + KFA YGFNKSH  AYA+++Y+TA+LK H+ + FM
Sbjct: 734  RETIAAGAKEKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYHTAWLKAHHCAAFM 793

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
            AA+LS  MD+T+ + I   DA K   L++LPP++N S+Y F P+  S+     IRYGLGA
Sbjct: 794  AASLSSDMDNTDTVNIFYLDAKKN-RLTVLPPDVNQSEYRFVPVSRSE-----IRYGLGA 847

Query: 838  IKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDC----FNE 892
            +KGTG+  +  I+  RK G  F ++FDF  R+D++ +NRR I +LI +GAFD        
Sbjct: 848  VKGTGEQAVNCILEARKSGGPFKDIFDFCSRVDRRMVNRRTIEALIRAGAFDTTISGTPH 907

Query: 893  KRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
             R  L++S+ +A++ AE+     +Q  LF +  +        YV    WS++++L  EK+
Sbjct: 908  DRNTLMSSVALAMEAAEQAAANAHQGGLFDDAPSGTGARAPEYVACKPWSEREKLANEKQ 967

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVI 1011
             LGF LS H +  Y  E  +F    L++L+ +   T V+G++   +++ T RGK+  + +
Sbjct: 968  ALGFYLSGHPYNSYAQEFSRFARRKLAQLESSRDPTVVAGLVVSSRVQMTRRGKMAFVAL 1027

Query: 1012 DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARIL 1071
            DD +  +EV + N+LYE +++ L+E+E+L+V G+   D +  ++R+ A+ +     AR  
Sbjct: 1028 DDGTAQIEVSVFNELYEASRSKLREDEVLVVEGRAQFDEYSNSMRVVADSLLSAGEARAR 1087

Query: 1072 YGKKFSVMFNRTF-------NISILKKILLRFKCKNGLPFVLYY 1108
            + ++  +  N            + LK +L  F+   G    L+Y
Sbjct: 1088 FARRLELKLNGEVAQLGAHAACARLKSLLEPFRADGGCAVRLHY 1131


>gi|298369652|ref|ZP_06980969.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str.
            F0314]
 gi|298282209|gb|EFI23697.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str.
            F0314]
          Length = 1144

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1137 (47%), Positives = 743/1137 (65%), Gaps = 20/1137 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A + A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARSAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCN+ +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYK 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++++ Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            +      +I  L  IL   R    + +P  L Y  +K+     + P  + V P  DL
Sbjct: 1072 LALAPGHDIERLAAILTAHRLPDTSHIPLQLSYSNDKA-SGRFQVPPKWMVTPSADL 1127


>gi|91788754|ref|YP_549706.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666]
 gi|91697979|gb|ABE44808.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666]
          Length = 1190

 Score = 1071 bits (2770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/1102 (50%), Positives = 755/1102 (68%), Gaps = 35/1102 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+H+E+S++DG  RI+++++AAA D QPALAITDLSNLFG +KFYK     G+KP+
Sbjct: 19   FVHLRIHTEFSVVDGTNRIDEIVQAAAADQQPALAITDLSNLFGTVKFYKEGRGAGVKPL 78

Query: 65   IGCDVWIT--NEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            IG DVW+    +      +RLLLLV+N+ GYL L ELL++A+  N+   +A I++EWLE+
Sbjct: 79   IGADVWVQVPGKDAAAPAARLLLLVQNHRGYLNLSELLTRAWTRNVVRDQAVIKLEWLEE 138

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLIALSGA  G +G A+  G +  A   A   + +FP  FY+E+QR ++P+    
Sbjct: 139  --LNEGLIALSGAQGGAVGQALLQGDDARALECALHLAGLFPHRFYLELQRAQRPDDERH 196

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+ + LP+VATHP+QFL   ++ AHE R CIAEGEIL NT+R++KFT+EQ FK
Sbjct: 197  VAAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCIAEGEILGNTRRVRKFTREQYFK 256

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPK----NININDFLISKS 298
            + ++M +LF D+PSA+ NT+EIA+RCNLKLE GKP LP +PTP+     + I+ +    S
Sbjct: 257  SAAQMTQLFADVPSALANTLEIARRCNLKLELGKPMLPDYPTPEVEGVRMPIDAYFRHAS 316

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
              GL++RL +LY +  +   ++  Y +RL+FEI TI+KM F GYFLIV DFI WAKNN  
Sbjct: 317  FEGLEERLAHLYPNEALRDQKRPVYVERLEFEINTILKMGFPGYFLIVGDFINWAKNNGC 376

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL YNLLFERFLNP R+SMPDFDIDFC   RDRVI 
Sbjct: 377  PVGPGRGSGAGSLVAYALRITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVID 436

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS-- 476
            YVKD+YG DAVSQIVTFGTMAA+ AIRDVGRVLD  Y FCD ISKLIP KPG+ +TL   
Sbjct: 437  YVKDKYGHDAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQAVTLQLL 496

Query: 477  -----------NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSK 525
                        A++ EP LAER + EE+V  L++LA+++EG+ RNVGMHAGGVLIAP K
Sbjct: 497  PAERKKNDKMVYALEAEPVLAERERKEEDVHTLLDLARKLEGLTRNVGMHAGGVLIAPGK 556

Query: 526  LINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN 585
            L +FCPLY Q G    +SQ+DK+D+E IGL+KFDFLGL TL+IL+    FI + +    +
Sbjct: 557  LTDFCPLYLQPGSGSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFIIQRHPSQKD 616

Query: 586  FSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM 645
            F    L LND   Y L  + NT AVFQ ES GM+ MLK+AKP+  E++IA+ +LYRPGPM
Sbjct: 617  FKFENLSLNDARVYALFAEGNTEAVFQFESIGMQRMLKDAKPNRLEDLIAMNALYRPGPM 676

Query: 646  DLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            DLI  +  RK G E   YPDPR K +L ETYGIMVYQEQVMQ AQILGGYSLG AD+LRR
Sbjct: 677  DLIPTYIARKQGKEVPEYPDPRVKPILEETYGIMVYQEQVMQTAQILGGYSLGGADMLRR 736

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKK   EM   R  F+ GA   GL++ KA+E+F+ +EKFAGYGFNKSH+ AYALL+Y+
Sbjct: 737  AMGKKDEKEMASQRDIFRKGAGVNGLTQEKADEVFDLMEKFAGYGFNKSHSAAYALLAYH 796

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TA+LK HY++ F AAN+++ MDDT+K+KIL  DA K  G+    P+IN   Y F PI  +
Sbjct: 797  TAWLKVHYTAEFFAANMTVEMDDTDKLKILFGDAQK-MGIQFESPDINRGDYRFEPISAT 855

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLIN 883
                  +RYGLGA+KGTG+  I AIV  R+ G  FT+L+DF  R+D+  +N+R + +LI 
Sbjct: 856  -----AVRYGLGAVKGTGQQAIAAIVAARQEGGPFTSLYDFCVRVDRSKLNKRTVEALIK 910

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLK-EYLNYVKVPSWS 942
             GAFD  +  R  L+AS+D A + A  T+   NQ  LF   D++    +    V+   + 
Sbjct: 911  GGAFDNLHLNRAELLASVDRAFEFAAATEANANQGGLFDMSDSHAASTQEPPLVEAVPFG 970

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTT 1001
             K  L+ EK  +GF LS H+F   E E+RQF    + +L  +     ++ I+++L++   
Sbjct: 971  VKARLVLEKTAIGFYLSGHLFDEVEAEVRQFAKRKIEDLIDSREPQLLAAILSDLRVING 1030

Query: 1002 YRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKV--LEDRFLKNIRINA 1059
             RGK++I  +DD ++ +E  ++  ++  N+N+LK++EL+IV G +    +RF +  ++  
Sbjct: 1031 NRGKLIIFKLDDKTDVLEASVDETVFNANRNLLKDDELVIVQGTLQGASERFGRRFKVT- 1089

Query: 1060 EKIFDINVARILYGKKFSVMFN 1081
             +++D+  AR  +GK   V  N
Sbjct: 1090 -QVWDLETARCKFGKYLRVAVN 1110


>gi|421557815|ref|ZP_16003712.1| DNA polymerase III alpha subunit [Neisseria meningitidis 80179]
 gi|402333534|gb|EJU68836.1| DNA polymerase III alpha subunit [Neisseria meningitidis 80179]
          Length = 1144

 Score = 1066 bits (2758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1133 (47%), Positives = 735/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWL+
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLD 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  VCVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCTDCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|421568318|ref|ZP_16014044.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            NM3001]
 gi|402342046|gb|EJU77217.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            NM3001]
          Length = 1144

 Score = 1066 bits (2757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 736/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWL 
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWL- 122

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI L+GAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 123  ANGDNSGLICLNGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT +Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N       + P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NGKASGRFQVPPKWTVTP 1123


>gi|56477932|ref|YP_159521.1| DNA polymerase III subunit alpha [Aromatoleum aromaticum EbN1]
 gi|56313975|emb|CAI08620.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1]
          Length = 1164

 Score = 1066 bits (2757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1155 (46%), Positives = 775/1155 (67%), Gaps = 38/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLRLHSEYSI DG+++I+  I  AA D  PAL I+DL+NLFG++KFYK A  KG+K
Sbjct: 7    PCFIHLRLHSEYSISDGIVQIDQAIARAAADAMPALGISDLANLFGMVKFYKGARGKGMK 66

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D WITN+ +  KP R LL+ +N  GY QLCELL++AY++N    RAE+  +W   
Sbjct: 67   PVVGVDTWITNDADRDKPFRALLICRNRKGYGQLCELLTRAYLDNKYRSRAEMHRQWFAD 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                D L+ LSGA  GDIG A+ NG  D+AE  A  W+++FPD FYIE+QR   P     
Sbjct: 127  GAASD-LLCLSGAMGGDIGQALVNGNPDVAERLAAEWAQLFPDAFYIELQRAGHPGTEAY 185

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I+Q + +A  + LP+VATHP+QFL+  +F AHE R CIA+G +L++ +R + FT+EQ FK
Sbjct: 186  IRQAVQLAGKLGLPVVATHPVQFLEPEDFKAHEARVCIAQGYVLADKRRPRDFTEEQYFK 245

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM  LF DIP A++N++EIA+RC+L ++ GK  LP+FPTP+ + +++FL++++K GL
Sbjct: 246  SQDEMCALFADIPEALENSVEIARRCSLTVQLGKNFLPQFPTPEGMTLDEFLVAEAKSGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  LY      + ++  Y+ RL+FE +TI++M F GYFLIV+DFI WAK N +PVGP
Sbjct: 306  EVRLAELYPAEAERERQRRTYEDRLKFETDTIVQMGFPGYFLIVADFINWAKENGVPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL+Y LLFERFLNP R+SMPDFDIDFC + R RVI+YV+ 
Sbjct: 366  GRGSGAGSLVAYSLRITDLDPLAYALLFERFLNPERVSMPDFDIDFCQDNRYRVIEYVRS 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYGK+AVSQI TFGTMA+K  +RDVGRVLDL Y  CD +SKLIP +  K ++L+ A + E
Sbjct: 426  RYGKEAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIPIEGAKPVSLAKAYEME 485

Query: 483  PQLAERIK---NEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
             Q+ E +K   + E V++L  LA+ +EG+ RNVGMHAGGVLIAP KL +FCPLY  +G  
Sbjct: 486  SQIGEMMKDGNDGESVQELWSLAEPLEGLSRNVGMHAGGVLIAPGKLTDFCPLYIADGDE 545

Query: 540  GI-ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
               +SQ+DKDD+E +GL+KFDFLGL  L+I++  + +++++  +  +  L  LP  D   
Sbjct: 546  ATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELAVEYVERLTGEKPD--LAALPFTDPAA 603

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKH 656
            Y +LK ANT A+FQ+ES+GMK +LK+  PD FE+IIA+++LYRPGP+   ++ +F  RK 
Sbjct: 604  YQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKK 663

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+   +Y  P  K  L  TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM 
Sbjct: 664  GQQEIDYFHPDLKPCLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKAEEMA 723

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            +HR+    GA + G     A ++F+ + KFA YGFNKSH  AYA+++Y+TA+LK H+ + 
Sbjct: 724  KHRETIAAGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYHTAWLKAHHCAA 783

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  +D+T+ I+I  +DA+   G++ILPP++N S + F P        K IRYGL
Sbjct: 784  FMAATMSADLDNTDTIRIFFEDAVAN-GVTILPPDVNASDFRFVPT-----DRKTIRYGL 837

Query: 836  GAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF---- 890
            GA+KG G+  + AI+  R+  G F +LFDF  R+D++ +NRR+I +LI +GAFD      
Sbjct: 838  GAVKGAGEPAVRAILAAREAGGAFRDLFDFCARVDRRAVNRRVIEALIRAGAFDLIEPSG 897

Query: 891  NEKRYMLVASIDVALKNAEKTKKFINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
               R  L+A++ +A++ AE+      Q  LF    +      E   YV+   WS+++ L 
Sbjct: 898  TADRARLLATVGLAMEAAEQAAANAMQGGLFDLIPEAAGAAPE---YVRARPWSERERLK 954

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKIL 1007
            EEK  +GF LS H F  +  E+R+F+   L+EL+P+     ++G++ +++ K T RGK+ 
Sbjct: 955  EEKLAIGFFLSGHPFNSFRKEVRRFVRRPLAELEPSRDLLMLAGVVMDVRTKMTGRGKMA 1014

Query: 1008 IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
             +V+DD S+  EV + ++L++  ++ +  +E+L+V GKV  D F   +RI A+K+  +  
Sbjct: 1015 FVVLDDGSHVREVSVFSELFDSQRSKIVTDEVLVVEGKVSNDDFTGGLRIVADKLMTLGE 1074

Query: 1068 ARILYGKKFSVMFNRTFNISI--------LKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
            AR  + +   +  N     +         L+ +L  F+ + G P  L Y  N+  + ++ 
Sbjct: 1075 ARSRFARALQLTVNGEVKAAGGASAAADRLQGLLTPFR-EGGCPVRLRY-RNEVAEADLP 1132

Query: 1120 FPLNYKVQPIDDLKL 1134
                ++V+ +DD  L
Sbjct: 1133 LGEGWRVR-LDDTLL 1146


>gi|421559788|ref|ZP_16005656.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 92045]
 gi|402334554|gb|EJU69838.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 92045]
          Length = 1144

 Score = 1065 bits (2753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1133 (47%), Positives = 740/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DV I N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAVALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++++ Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPGHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|304388354|ref|ZP_07370467.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            ATCC 13091]
 gi|304337671|gb|EFM03827.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            ATCC 13091]
          Length = 1144

 Score = 1064 bits (2752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1133 (47%), Positives = 738/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYMELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT +Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLSSHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|385329077|ref|YP_005883380.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            alpha710]
 gi|308389929|gb|ADO32249.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            alpha710]
          Length = 1144

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1134 (47%), Positives = 744/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+
Sbjct: 422  VRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIK--NTTGDIIDVGKIPLDDQVAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  V
Sbjct: 951  SGHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E+++  Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  
Sbjct: 1011 EIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQMARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S+      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1071 SLALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|385324779|ref|YP_005879218.1| DNA polymerase III subunit alpha [Neisseria meningitidis 8013]
 gi|261393166|emb|CAX50778.1| DNA polymerase III alpha subunit [Neisseria meningitidis 8013]
          Length = 1144

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1133 (47%), Positives = 736/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DV I N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAVALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      +  +PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGTIPLDDQTAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLSSHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|416207548|ref|ZP_11620946.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|416207624|ref|ZP_11620964.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|416207677|ref|ZP_11620983.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141631|gb|EGC64093.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141663|gb|EGC64124.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141697|gb|EGC64157.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
          Length = 1144

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1134 (47%), Positives = 743/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  V
Sbjct: 951  SGHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E+++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  
Sbjct: 1011 EIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S+      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1071 SLALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|349608886|ref|ZP_08888303.1| DNA polymerase III subunit alpha [Neisseria sp. GT4A_CT1]
 gi|348615845|gb|EGY65354.1| DNA polymerase III subunit alpha [Neisseria sp. GT4A_CT1]
          Length = 1150

 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1137 (47%), Positives = 739/1137 (64%), Gaps = 20/1137 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCN+ +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYK 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++++ Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            +      +I  L  IL   +  +   +P  L Y  N       + P  + V P   L
Sbjct: 1072 LALTPGHDIERLATILTAHRLPDTPHIPLQLSYS-NGKASGRFQVPPKWMVTPSSTL 1127


>gi|433509974|ref|ZP_20466831.1| DNA polymerase III subunit alpha [Neisseria meningitidis 12888]
 gi|432244912|gb|ELL00391.1| DNA polymerase III subunit alpha [Neisseria meningitidis 12888]
          Length = 1144

 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1133 (47%), Positives = 737/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DV I N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  TEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK+ EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKSEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|433514136|ref|ZP_20470920.1| DNA polymerase III subunit alpha [Neisseria meningitidis 63049]
 gi|432246023|gb|ELL01485.1| DNA polymerase III subunit alpha [Neisseria meningitidis 63049]
          Length = 1144

 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1134 (47%), Positives = 742/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  + +P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDLPRWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  V
Sbjct: 951  SGHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E+++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  
Sbjct: 1011 EIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S+      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1071 SLALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|385337436|ref|YP_005891309.1| DNA polymerase III subunit alpha [Neisseria meningitidis WUE 2594]
 gi|421551465|ref|ZP_15997456.1| DNA polymerase III alpha subunit [Neisseria meningitidis 69166]
 gi|433472123|ref|ZP_20429501.1| DNA polymerase III subunit alpha [Neisseria meningitidis 68094]
 gi|433476246|ref|ZP_20433581.1| DNA polymerase III subunit alpha [Neisseria meningitidis 88050]
 gi|433478376|ref|ZP_20435686.1| DNA polymerase III subunit alpha [Neisseria meningitidis 70012]
 gi|433516356|ref|ZP_20473119.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2004090]
 gi|433518259|ref|ZP_20474999.1| DNA polymerase III subunit alpha [Neisseria meningitidis 96023]
 gi|433522563|ref|ZP_20479246.1| DNA polymerase III subunit alpha [Neisseria meningitidis 61103]
 gi|433524760|ref|ZP_20481415.1| DNA polymerase III subunit alpha [Neisseria meningitidis 97020]
 gi|433526895|ref|ZP_20483517.1| DNA polymerase III subunit alpha [Neisseria meningitidis 69096]
 gi|433527594|ref|ZP_20484206.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM3652]
 gi|433529762|ref|ZP_20486357.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM3642]
 gi|433531982|ref|ZP_20488549.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2007056]
 gi|433535284|ref|ZP_20491816.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2001212]
 gi|433539561|ref|ZP_20496028.1| DNA polymerase III subunit alpha [Neisseria meningitidis 70030]
 gi|319409850|emb|CBY90162.1| DNA polymerase III alpha subunit [Neisseria meningitidis WUE 2594]
 gi|402327342|gb|EJU62732.1| DNA polymerase III alpha subunit [Neisseria meningitidis 69166]
 gi|432206749|gb|ELK62750.1| DNA polymerase III subunit alpha [Neisseria meningitidis 68094]
 gi|432208101|gb|ELK64080.1| DNA polymerase III subunit alpha [Neisseria meningitidis 88050]
 gi|432213372|gb|ELK69291.1| DNA polymerase III subunit alpha [Neisseria meningitidis 70012]
 gi|432251477|gb|ELL06844.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2004090]
 gi|432251997|gb|ELL07357.1| DNA polymerase III subunit alpha [Neisseria meningitidis 96023]
 gi|432257752|gb|ELL13046.1| DNA polymerase III subunit alpha [Neisseria meningitidis 61103]
 gi|432257811|gb|ELL13104.1| DNA polymerase III subunit alpha [Neisseria meningitidis 97020]
 gi|432258948|gb|ELL14228.1| DNA polymerase III subunit alpha [Neisseria meningitidis 69096]
 gi|432266494|gb|ELL21677.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM3652]
 gi|432268627|gb|ELL23794.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2007056]
 gi|432268854|gb|ELL24019.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM3642]
 gi|432269916|gb|ELL25064.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2001212]
 gi|432271581|gb|ELL26704.1| DNA polymerase III subunit alpha [Neisseria meningitidis 70030]
          Length = 1144

 Score = 1063 bits (2748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1134 (47%), Positives = 743/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMNNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  V
Sbjct: 951  SGHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E+++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  
Sbjct: 1011 EIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S+      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1071 SLALAPHHDIGELVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|254804357|ref|YP_003082578.1| DNA polymerase III subunit alpha [Neisseria meningitidis alpha14]
 gi|254667899|emb|CBA04031.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14]
          Length = 1144

 Score = 1063 bits (2748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1134 (47%), Positives = 743/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  V
Sbjct: 951  SGHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E+++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  
Sbjct: 1011 EIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S+      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1071 SLALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|419798780|ref|ZP_14324170.1| DNA polymerase III, alpha subunit [Neisseria sicca VK64]
 gi|385693654|gb|EIG24293.1| DNA polymerase III, alpha subunit [Neisseria sicca VK64]
          Length = 1144

 Score = 1063 bits (2748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 740/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCN+ +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L  A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDEAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYK 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++++ Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L  IL   R    + +P  L Y  +K+   + + P  + V P
Sbjct: 1072 LALAPGHDIERLAAILTAHRLPDTSHIPLQLSYSNDKA-SGKFQVPPKWMVTP 1123


>gi|416164243|ref|ZP_11607175.1| DNA polymerase III, alpha subunit [Neisseria meningitidis N1568]
 gi|433474146|ref|ZP_20431501.1| DNA polymerase III subunit alpha [Neisseria meningitidis 97021]
 gi|433481518|ref|ZP_20438785.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2006087]
 gi|433484580|ref|ZP_20441799.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2002038]
 gi|433485537|ref|ZP_20442740.1| DNA polymerase III subunit alpha [Neisseria meningitidis 97014]
 gi|325127575|gb|EGC50498.1| DNA polymerase III, alpha subunit [Neisseria meningitidis N1568]
 gi|432207899|gb|ELK63885.1| DNA polymerase III subunit alpha [Neisseria meningitidis 97021]
 gi|432218275|gb|ELK74138.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2006087]
 gi|432219666|gb|ELK75502.1| DNA polymerase III subunit alpha [Neisseria meningitidis 2002038]
 gi|432224026|gb|ELK79799.1| DNA polymerase III subunit alpha [Neisseria meningitidis 97014]
          Length = 1144

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1133 (47%), Positives = 739/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT +Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMALQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|15677663|ref|NP_274824.1| DNA polymerase III subunit alpha [Neisseria meningitidis MC58]
 gi|385853884|ref|YP_005900398.1| DNA polymerase III subunit alpha [Neisseria meningitidis H44/76]
 gi|416198492|ref|ZP_11618968.1| DNA polymerase III, alpha subunit [Neisseria meningitidis CU385]
 gi|427827746|ref|ZP_18994770.1| DNA polymerase III subunit alpha [Neisseria meningitidis H44/76]
 gi|433465809|ref|ZP_20423280.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM422]
 gi|433488993|ref|ZP_20446143.1| DNA polymerase III subunit alpha [Neisseria meningitidis M13255]
 gi|433491182|ref|ZP_20448295.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM418]
 gi|433505637|ref|ZP_20462570.1| DNA polymerase III subunit alpha [Neisseria meningitidis 9506]
 gi|433507815|ref|ZP_20464713.1| DNA polymerase III subunit alpha [Neisseria meningitidis 9757]
 gi|433512020|ref|ZP_20468835.1| DNA polymerase III subunit alpha [Neisseria meningitidis 4119]
 gi|14194679|sp|Q9JXZ2.1|DPO3A_NEIMB RecName: Full=DNA polymerase III subunit alpha
 gi|7227081|gb|AAF42162.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]
 gi|316984432|gb|EFV63405.1| DNA polymerase III subunit alpha [Neisseria meningitidis H44/76]
 gi|325139647|gb|EGC62186.1| DNA polymerase III, alpha subunit [Neisseria meningitidis CU385]
 gi|325200888|gb|ADY96343.1| DNA polymerase III, alpha subunit [Neisseria meningitidis H44/76]
 gi|432200905|gb|ELK56993.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM422]
 gi|432221322|gb|ELK77133.1| DNA polymerase III subunit alpha [Neisseria meningitidis M13255]
 gi|432225741|gb|ELK81481.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM418]
 gi|432239369|gb|ELK94923.1| DNA polymerase III subunit alpha [Neisseria meningitidis 9757]
 gi|432239524|gb|ELK95076.1| DNA polymerase III subunit alpha [Neisseria meningitidis 9506]
 gi|432245566|gb|ELL01034.1| DNA polymerase III subunit alpha [Neisseria meningitidis 4119]
          Length = 1144

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1133 (47%), Positives = 736/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DV I N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  TEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|121634255|ref|YP_974500.1| DNA polymerase III subunit alpha [Neisseria meningitidis FAM18]
 gi|385339426|ref|YP_005893298.1| DNA polymerase III subunit alpha [Neisseria meningitidis G2136]
 gi|433467876|ref|ZP_20425325.1| DNA polymerase III subunit alpha [Neisseria meningitidis 87255]
 gi|433495300|ref|ZP_20452361.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM762]
 gi|433497433|ref|ZP_20454461.1| DNA polymerase III subunit alpha [Neisseria meningitidis M7089]
 gi|433497988|ref|ZP_20455004.1| DNA polymerase III subunit alpha [Neisseria meningitidis M7124]
 gi|433501488|ref|ZP_20458469.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM174]
 gi|120865961|emb|CAM09698.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            FAM18]
 gi|325197670|gb|ADY93126.1| DNA polymerase III, alpha subunit [Neisseria meningitidis G2136]
 gi|432201428|gb|ELK57509.1| DNA polymerase III subunit alpha [Neisseria meningitidis 87255]
 gi|432227932|gb|ELK83634.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM762]
 gi|432232207|gb|ELK87857.1| DNA polymerase III subunit alpha [Neisseria meningitidis M7089]
 gi|432233329|gb|ELK88957.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM174]
 gi|432236755|gb|ELK92359.1| DNA polymerase III subunit alpha [Neisseria meningitidis M7124]
          Length = 1144

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1134 (47%), Positives = 743/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  V
Sbjct: 951  SGHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E+++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  
Sbjct: 1011 EIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S+      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1071 SLALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|261378286|ref|ZP_05982859.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685]
 gi|269145377|gb|EEZ71795.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685]
          Length = 1144

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1134 (47%), Positives = 743/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYCFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I+T R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESIITARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMNNADQKAANANQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +
Sbjct: 951  SGHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQI 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E++++    E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  
Sbjct: 1011 EIMVSGHTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            ++      +I+ L  IL   R    + +P  L Y  N     ++K    + V P
Sbjct: 1071 ALALAPGHDITRLATILTTHRLPDTSHIPLQLSYS-NGKASGKLKIAPKWMVTP 1123


>gi|433469958|ref|ZP_20427366.1| DNA polymerase III subunit alpha [Neisseria meningitidis 98080]
 gi|432201551|gb|ELK57631.1| DNA polymerase III subunit alpha [Neisseria meningitidis 98080]
          Length = 1144

 Score = 1062 bits (2746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1133 (47%), Positives = 739/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y+KRL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|421543069|ref|ZP_15989169.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NM255]
 gi|402315831|gb|EJU51387.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NM255]
          Length = 1144

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1133 (47%), Positives = 740/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y+KRL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  TEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIK--NTTGDIIDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLSSHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|404378385|ref|ZP_10983479.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453]
 gi|294484258|gb|EFG31941.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453]
          Length = 1151

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1107 (48%), Positives = 746/1107 (67%), Gaps = 20/1107 (1%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
             +I LR+HSE+SIIDG +R+ ++ + AA    PAL +TDL N FG++KFYK   N GIKP
Sbjct: 5    HYIPLRIHSEFSIIDGTIRLKELAQTAAKFGLPALGLTDLMNTFGLLKFYKICRNAGIKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G DV I N  +   P R LLL++N  GY +L ELL++A+    N+   E+  +WL + 
Sbjct: 65   IMGADVRIHNPHKPDNPYRALLLIRNEKGYTRLSELLTQAHTHQHNHQPPELLEDWLAEG 124

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMNFQ 182
                GLI LSGAH+G++G  +  G +D A+  A++++  FP+ FY+E+QR  ++P     
Sbjct: 125  D-NSGLICLSGAHMGEVGSQLMLGHDDAAQIAAQKYATWFPNAFYLELQRLPEKPEWETY 183

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+ ++LP+VATH  QFL+  +FLAH+ R CIA G  L++ KR ++F   Q F 
Sbjct: 184  VSGSLKIAAKLDLPVVATHAAQFLQPNDFLAHDTRVCIANGWTLTDPKRPREFVASQYFI 243

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
               EM+  F DIP A+QN++EIAKRCNL L  GK  LP+FPTP  +N++D++I  S  GL
Sbjct: 244  QPDEMLSRFADIPEALQNSVEIAKRCNLTLTLGKNFLPQFPTPDGMNLDDYIIHLSNLGL 303

Query: 303  KKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            ++RL  LY + E  + ++L  Y+ RL FE+ TII+M F GYFLIV DFI WAK N  PVG
Sbjct: 304  QERLDTLYPN-ETERAQRLPEYQARLDFELNTIIQMGFPGYFLIVQDFINWAKQNGCPVG 362

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC   R RVI+YV+
Sbjct: 363  PGRGSGAGSLVAYSLKITDLDPLKYSLLFERFLNPERVSMPDFDIDFCQANRGRVIEYVR 422

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            ++YGKDAVSQIVTFGT+++K  IRDVGRVL L +  CD +SKL+P    K + L  AI  
Sbjct: 423  EKYGKDAVSQIVTFGTLSSKSVIRDVGRVLQLPFGLCDKLSKLVPIVQNKPLHLEKAIAT 482

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EP++ + +K EEE  +L++LA ++E + RN+GMHAGGVLIAP K+ +FC +Y+ +     
Sbjct: 483  EPEMMQIVK-EEEAEELMDLAMKLEDLTRNLGMHAGGVLIAPGKISDFCGVYQADEHASP 541

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS-LNKLPLNDKDTYN 600
            +S YDK D+EEIGL+KFDFLGL  L+I++    FIK+   K  + + +N  PL+D+  Y 
Sbjct: 542  VSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIKQTTGKDIDVNDVNIAPLDDQAAYQ 601

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK ML +A+    EEIIA +SLYRPGPMDLI +F  R  G  F
Sbjct: 602  IFRDANTTAVFQFESSGMKKMLSQARTTNLEEIIAFVSLYRPGPMDLIPDFIARMKGAKF 661

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P    VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM++HR  
Sbjct: 662  EYMHPLLAPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKVEEMVKHRDI 721

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+++ KA+EIF+ +EKFAGYGFNKSHA AYA +S+ TA+LK HY + FMAA 
Sbjct: 722  FAQGAAKQGINREKADEIFDYMEKFAGYGFNKSHAAAYAYVSFQTAWLKAHYPAEFMAAT 781

Query: 781  LSLSMDDTNKIKILVKDA-IKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
            +S  +D+T+++KI   DA  K  G++ LPP++N S Y F P        K+IRY LGAIK
Sbjct: 782  MSSELDNTDQLKIFYDDARSKLNGITFLPPDVNESYYRFVP-----NNQKQIRYALGAIK 836

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ + AIV  R+ G  F NLFDF +R+ K++INRR I +LI  GAFD     R +L+
Sbjct: 837  GTGEAAVNAIVAARESGGKFKNLFDFCERVGKQHINRRTIEALIRGGAFDGLETNRALLL 896

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A++++AL+NA++     NQ  LF  D  ++  E L  +   +WS+ Q+L EEK+ +GF L
Sbjct: 897  ANVELALQNADQKANNANQGGLF--DMLDDAIEELEMLPEKAWSESQKLAEEKQAIGFYL 954

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPT-YSCTVSGIITELKLKTTYRGKILIIVIDDNSNS 1017
            S H F  +  E+RQF    L++L+P  ++  ++G  T+++      GK + I ++DN+ S
Sbjct: 955  SGHPFEPHRAEVRQFSKTPLAQLRPAQHTQLIAGFATQIRTIMGKNGKFIAITLEDNTAS 1014

Query: 1018 VEVIINNQLYEK-NKNILKENELLIVSGKVLEDRF---LKNIRINAEKIFDINVARILYG 1073
             EVI+  +  +  +K+ LK +++LI   ++ ED +   L  +RI+A  ++  N AR+ Y 
Sbjct: 1015 QEVIVRGEALDNLSKDALKTDQILIADCRISEDTYSGELGALRISANAVYTQNEARVAYA 1074

Query: 1074 KKFSVMFNRTFNISILKKILLRFKCKN 1100
            +  S+  N + +++ L +IL + + KN
Sbjct: 1075 RGLSLNVNPSCDVAKLMQILQQNQQKN 1101


>gi|255065760|ref|ZP_05317615.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256]
 gi|255050078|gb|EET45542.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256]
          Length = 1144

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 737/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ +  N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKERNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCN+ +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYK 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++++ Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L  IL   R      +P  L Y  N     + + P  + V P
Sbjct: 1072 LALAPGHDIERLATILTAHRLPDTPHIPLQLSYS-NGKASGKFQVPPKWMVTP 1123


>gi|416179613|ref|ZP_11611049.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M6190]
 gi|416193205|ref|ZP_11617082.1| DNA polymerase III, alpha subunit [Neisseria meningitidis ES14902]
 gi|433493185|ref|ZP_20450271.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM586]
 gi|433503530|ref|ZP_20460486.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM126]
 gi|325131475|gb|EGC54182.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M6190]
 gi|325137580|gb|EGC60161.1| DNA polymerase III, alpha subunit [Neisseria meningitidis ES14902]
 gi|432226788|gb|ELK82511.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM586]
 gi|432239000|gb|ELK94560.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM126]
          Length = 1144

 Score = 1061 bits (2743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1134 (47%), Positives = 742/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +   + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLVEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  V
Sbjct: 951  SGHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E+++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  
Sbjct: 1011 EIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S+      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1071 SLALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|416189042|ref|ZP_11615058.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M0579]
 gi|325135612|gb|EGC58229.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M0579]
          Length = 1144

 Score = 1061 bits (2743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1133 (47%), Positives = 741/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y+KRL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  TEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIK--NTTGDIIDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGKLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|433537319|ref|ZP_20493815.1| DNA polymerase III subunit alpha [Neisseria meningitidis 77221]
 gi|432271742|gb|ELL26864.1| DNA polymerase III subunit alpha [Neisseria meningitidis 77221]
          Length = 1144

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1133 (47%), Positives = 737/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  + +P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDLPRWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMALQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|421541125|ref|ZP_15987255.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            93004]
 gi|402315918|gb|EJU51472.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            93004]
          Length = 1144

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 735/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      +  +PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIK--NTTGDIVDVGTIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N      ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NGKASGRLQVPPKWTVTP 1123


>gi|340361388|ref|ZP_08683817.1| DNA-directed DNA polymerase III alpha subunit [Neisseria macacae ATCC
            33926]
 gi|339888765|gb|EGQ78199.1| DNA-directed DNA polymerase III alpha subunit [Neisseria macacae ATCC
            33926]
          Length = 1144

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1133 (47%), Positives = 740/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + N   D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNSNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCN+ +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+K
Sbjct: 423  RDKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYK 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++++ Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L  IL   R      +P  L Y  +K+   + + P  + V P
Sbjct: 1072 LALAPGHDIERLAAILTAHRLPDTPHIPLQLSYSNDKA-SGKFQVPPKWMVTP 1123


>gi|254671593|emb|CBA09263.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha153]
          Length = 1144

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1133 (47%), Positives = 734/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  ++  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N      ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NGKASGRLQVPRKWTVTP 1123


>gi|416174180|ref|ZP_11609141.1| DNA polymerase III, alpha subunit [Neisseria meningitidis OX99.30304]
 gi|325129568|gb|EGC52392.1| DNA polymerase III, alpha subunit [Neisseria meningitidis OX99.30304]
          Length = 1144

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1133 (47%), Positives = 740/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR   FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPHDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y+KRL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  TEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIK--NTTGDIIDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGKLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|421545138|ref|ZP_15991203.1| DNA polymerase III alpha subunit [Neisseria meningitidis NM140]
 gi|421547189|ref|ZP_15993227.1| DNA polymerase III alpha subunit [Neisseria meningitidis NM183]
 gi|421548160|ref|ZP_15994188.1| DNA polymerase III alpha subunit [Neisseria meningitidis NM2781]
 gi|421553393|ref|ZP_15999356.1| DNA polymerase III alpha subunit [Neisseria meningitidis NM576]
 gi|402321552|gb|EJU57025.1| DNA polymerase III alpha subunit [Neisseria meningitidis NM183]
 gi|402321821|gb|EJU57293.1| DNA polymerase III alpha subunit [Neisseria meningitidis NM140]
 gi|402326882|gb|EJU62280.1| DNA polymerase III alpha subunit [Neisseria meningitidis NM2781]
 gi|402328301|gb|EJU63678.1| DNA polymerase III alpha subunit [Neisseria meningitidis NM576]
          Length = 1144

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1133 (47%), Positives = 734/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  ++  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N      ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NGKASGRLQVPRKWTVTP 1123


>gi|385341321|ref|YP_005895192.1| DNA polymerase III subunit alpha [Neisseria meningitidis M01-240149]
 gi|385856617|ref|YP_005903129.1| DNA polymerase III subunit alpha [Neisseria meningitidis NZ-05/33]
 gi|325201527|gb|ADY96981.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240149]
 gi|325207506|gb|ADZ02958.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NZ-05/33]
          Length = 1144

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1133 (47%), Positives = 738/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  ++  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGKLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|421538793|ref|ZP_15984965.1| DNA polymerase III alpha subunit [Neisseria meningitidis 93003]
 gi|402315500|gb|EJU51063.1| DNA polymerase III alpha subunit [Neisseria meningitidis 93003]
          Length = 1144

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 736/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK     GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKVCRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRFLK--NIRINAEKIFDINVARILYGKKFS 1077
            ++I  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMIGGQTLENCADCLKADQVLIIESKVSRDDYGSGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|421555530|ref|ZP_16001460.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 98008]
 gi|402329767|gb|EJU65121.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 98008]
          Length = 1144

 Score = 1060 bits (2740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1133 (47%), Positives = 736/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  ++  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|417957071|ref|ZP_12599999.1| DNA polymerase III subunit alpha [Neisseria weaveri ATCC 51223]
 gi|343969075|gb|EGV37294.1| DNA polymerase III subunit alpha [Neisseria weaveri ATCC 51223]
          Length = 1145

 Score = 1060 bits (2740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1146 (47%), Positives = 757/1146 (66%), Gaps = 23/1146 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+EYSI DG +RI   I+ A     PAL ++DL N+FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEYSISDGTVRIKQAIKQAQAYGLPALGVSDLMNMFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+VKN++GYL+L ELL+ AY+ ++ N   AE+R  WL 
Sbjct: 64   PVAAADVWIENPAAPDKPFRAMLIVKNDSGYLRLSELLTAAYVGKDRNVDHAELRQAWLA 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
            +     GLI LSGAH G++G+ + NG  D A+  A++++  FP+ FY+E+QR  ++P   
Sbjct: 124  EGD-NSGLICLSGAHYGEVGVNLINGHADAAKAAAQKYAAWFPNAFYLELQRLPERPQWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + IA+ ++LP+VATHP QFL + +F AHE R CIA G +L++ KR  +FT  Q 
Sbjct: 183  ASVSGSVEIAAELDLPVVATHPTQFLNREDFQAHEARVCIAGGWVLADKKRPHEFTPSQY 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F +  +M + F D+P A+QNT+EIAKRCNL L  GK  LP FPTP  ++++D+L   S  
Sbjct: 243  FASPEQMAERFADLPEALQNTVEIAKRCNLTLTLGKNFLPLFPTPDGMSLDDYLTQLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y  RL FE+  II+M F GYFLIV DFI WAKNN  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYHARLDFELGIIIQMGFPGYFLIVQDFINWAKNNGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQSNRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG DAVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  + ++L  A+
Sbjct: 422  VREKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFGLCDRLSKLIPLEANRPVSLEKAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP++ + I+ EE   +L+ LA+++E + R +GMHAGGVLIAP K+ +F P+Y+ +   
Sbjct: 482  EMEPEIRQLIE-EEGAEELMTLAQKLEDLTRGLGMHAGGVLIAPGKISDFSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      +N +PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQENIK--NTVGEEIDVNTIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  KIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQA 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FEYIHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA +  +S+ KA+EIF+ +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAKGAEEKNISRKKADEIFDYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+ +++K    D+ +  G++ LPP+INLS Y F P      K K+IRY LGAIK
Sbjct: 779  TMSSELDNADQLKHFYDDS-RANGVTFLPPDINLSDYLFTP-----NKQKQIRYALGAIK 832

Query: 840  GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +EAI+  R   G FT+L DF +R+DK ++N+R I +LI +GAFD  N  R ML+
Sbjct: 833  GTGEAAVEAIIAARNSGGAFTDLLDFCERVDKAHLNKRTIEALIRAGAFDNLNPNRAMLI 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NAE+     NQ  LF  D   +  + +     P+WS+ ++L EEK+VLGF L
Sbjct: 893  ANIDLAISNAEQKAANANQGGLF--DFVEDAIDPVQMEAAPAWSESEKLAEEKQVLGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E +Q  PI+L  LKP  +  ++G  T+++     RGKI+ + ++D     
Sbjct: 951  SGHPFSPYAKEAKQIAPIHLGRLKPQDNIRIAGFATDIRSIMGKRGKIVFLTLEDQHGQA 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN--IRINAEKIFDINVARILYGKKF 1076
            E++++  + E++   LK ++ LIV  K+  D +     +RI A ++  +  AR  Y +  
Sbjct: 1011 EIMVSGNVLEESAGCLKTDQALIVECKISRDDYNGGDALRIMANQVMTLQTARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCK---NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLK 1133
             +      NI+ L ++L  ++     NG+P  + Y  N +   +++    + ++P   L 
Sbjct: 1071 HLYLTPQNNITELAELLQPYRSSSPGNGIPIKITYT-NPAATGDLQASSKWLIKPDKTLF 1129

Query: 1134 LALINL 1139
              L N+
Sbjct: 1130 TQLENI 1135


>gi|385855843|ref|YP_005902356.1| DNA polymerase III subunit alpha [Neisseria meningitidis M01-240355]
 gi|325204784|gb|ADZ00238.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240355]
          Length = 1144

 Score = 1059 bits (2739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1133 (47%), Positives = 734/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  ++  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N      ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NGKASGRLQVPPKWTVTP 1123


>gi|241759501|ref|ZP_04757605.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114]
 gi|241320283|gb|EER56616.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114]
          Length = 1144

 Score = 1059 bits (2739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1134 (47%), Positives = 742/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAVDVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FP+ FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPNAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  KAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLIDAPMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +
Sbjct: 951  SGHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQI 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E++++ Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  
Sbjct: 1011 EIMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S+      +I+ L  IL   R    + +P  L Y  N     ++K    + V P
Sbjct: 1071 SLALAPGHDITRLAAILTAHRLPDTSHIPLQLSYS-NGKASGKLKIAPKWMVTP 1123


>gi|421561848|ref|ZP_16007685.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM2657]
 gi|402336233|gb|EJU71494.1| DNA polymerase III subunit alpha [Neisseria meningitidis NM2657]
          Length = 1144

 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 734/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  ++  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      +IRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MRIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N      ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NGKASGRLQVPRKWTVTP 1123


>gi|313669043|ref|YP_004049327.1| DNA polymerase III subunit alpha [Neisseria lactamica 020-06]
 gi|313006505|emb|CBN87969.1| putative DNA polymerase III, alpha subunit [Neisseria lactamica
            020-06]
          Length = 1144

 Score = 1058 bits (2737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 738/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMVERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K ++L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQKF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L  TYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+ Q  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVCQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+      + P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYG-NEKASGRFQVPPKWTVTP 1123


>gi|319639431|ref|ZP_07994181.1| DNA polymerase III subunit alpha [Neisseria mucosa C102]
 gi|317399326|gb|EFV79997.1| DNA polymerase III subunit alpha [Neisseria mucosa C102]
          Length = 1144

 Score = 1058 bits (2737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1136 (47%), Positives = 739/1136 (65%), Gaps = 26/1136 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALCISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + N   D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNSNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG DAVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  REKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN---FSLNKLPLNDKD 597
             +S YDK D+E++GL+KFDFLGL  L+I++     + + N KTT      + K+PL+D+ 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKTTTGDIVDVGKIPLDDQA 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG 657
             Y + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G
Sbjct: 597  AYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKG 656

Query: 658  EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
            + F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++H
Sbjct: 657  QEFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKH 716

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            R+ F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FM
Sbjct: 717  REIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFM 776

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
            AA +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGA
Sbjct: 777  AATMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGA 830

Query: 838  IKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            IKGTG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R M
Sbjct: 831  IKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAM 890

Query: 897  LVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGF 956
            L+A+ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF
Sbjct: 891  LLANIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLIDAPMWSESEKLAEEKTVIGF 948

Query: 957  CLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSN 1016
             LS H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S 
Sbjct: 949  YLSGHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSG 1008

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGK 1074
             +E++++ Q  E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +
Sbjct: 1009 QIEIMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYAR 1068

Query: 1075 KFSVMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
              S+  +   +I  L  IL   R      +P  L Y  N     ++K    + V P
Sbjct: 1069 SLSLALSPGHDIERLAAILTAHRLPDTAHIPLQLSYS-NGKASGKLKIAPKWMVTP 1123


>gi|422110929|ref|ZP_16380784.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|309378417|emb|CBX22970.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1144

 Score = 1058 bits (2735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 738/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K ++L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQKF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L  TYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+ Q  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVCQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+      + P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYG-NEKASGRFQVPPKWTVTP 1123


>gi|345875687|ref|ZP_08827477.1| DNA polymerase III subunit alpha [Neisseria weaveri LMG 5135]
 gi|343968586|gb|EGV36812.1| DNA polymerase III subunit alpha [Neisseria weaveri LMG 5135]
          Length = 1145

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1146 (47%), Positives = 756/1146 (65%), Gaps = 23/1146 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+EYSI DG +RI   I+ A     PAL ++DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEYSISDGTVRIKQAIKQAQAYGLPALGVSDLMNTFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+VKN++GYL+L ELL+ AY+ ++ N   AE+R  WL 
Sbjct: 64   PVAAADVWIENPAAPDKPFRAMLIVKNDSGYLRLSELLTAAYVGKDRNVDHAELRQTWLA 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
            +     GLI LSGAH G++G  + NG  D A+  A++++  FP+ FY+E+QR  ++P   
Sbjct: 124  EGD-NSGLICLSGAHYGEVGANLMNGHADAAKAAAQKYAAWFPNAFYLELQRLPERPQWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + IA+ ++LP+VATHP QFL + +F AHE R CIA G +L++ KR  +FT  Q 
Sbjct: 183  ASVSGSLEIAAELDLPVVATHPTQFLNQEDFSAHEARVCIAGGWVLADKKRPHEFTPSQY 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F +  +M++ F D+P A+QNT+EIAKRCNL L  GK  LP FPTP  ++++D+L   S  
Sbjct: 243  FASSEQMVERFADLPEALQNTVEIAKRCNLTLTLGKNFLPLFPTPDGMSLDDYLTQLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y+ RL FE+  II+M F GYFLIV DFI WAKNN  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQARLDFELGIIIQMGFPGYFLIVQDFINWAKNNGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQSNRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG DAVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  + ++L  A+
Sbjct: 422  VREKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFGLCDRLSKLIPLEANRPVSLEKAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP++ + I+ EE   +L+ LA+++E + R +GMHAGGVLIAP K+ +F P+Y+ +   
Sbjct: 482  EMEPEIRQLIE-EEGAEELMTLAQKLEDLTRGLGMHAGGVLIAPGKISDFSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      +N +PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQENIK--NTVGEEIDVNTIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  KIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQA 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FEYIHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA +  +S+ KA+EIF+ +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAKGAEEKNISRKKADEIFDYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+ +++K    D+ +  G++ LPP+INLS Y F P        K+IRY LGAIK
Sbjct: 779  TMSSELDNADQLKHFYDDS-RANGVTFLPPDINLSDYLFTP-----NNQKQIRYALGAIK 832

Query: 840  GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +EAI+  R   G FT+L DF +R+DK ++N+R I +LI +GAFD  N  R ML+
Sbjct: 833  GTGEAAVEAIIAARNSGGAFTDLLDFCERVDKAHLNKRTIEALIRAGAFDNLNPNRAMLI 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NAE+     NQ  LF  D   +  + +     P+WS+ ++L EEK+VLGF L
Sbjct: 893  ANIDLAISNAEQKAANANQGGLF--DFVEDAIDPVQMEAAPAWSESEKLAEEKQVLGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E +Q  PI+L  LKP  +  ++G  T+++     RGKI+ + ++D     
Sbjct: 951  SGHPFSPYAKEAKQIAPIHLGRLKPQDNIRIAGFATDIRSIMGKRGKIVFLTLEDQHGQA 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN--IRINAEKIFDINVARILYGKKF 1076
            E++++  + E++   LK ++ LIV  K+  D +     +RI A ++  +  AR  Y +  
Sbjct: 1011 EIMVSGNVLEESAGCLKTDQALIVECKISRDDYNGGDALRIMANQVMTLQTARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILLRFKCK---NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLK 1133
             +      NI+ L ++L  ++     NG+P  + Y  N +   +++    + ++P   L 
Sbjct: 1071 HLYLTPQNNITELAELLQPYRSSSPGNGIPIKITYT-NPAATGDLQASSKWLIKPDKTLF 1129

Query: 1134 LALINL 1139
              L N+
Sbjct: 1130 TQLENI 1135


>gi|261401655|ref|ZP_05987780.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970]
 gi|269208234|gb|EEZ74689.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970]
          Length = 1144

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 738/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K ++L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  +T      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--STTGDIVDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+ Q  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVCQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      NI  L ++L   +  +   +P  L Y  N+      + P  + V P
Sbjct: 1072 LALAPHHNIGGLVQLLAAHQLPDTPRIPLQLSYG-NEKASGRFQVPPKWTVTP 1123


>gi|421566141|ref|ZP_16011899.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            NM3081]
 gi|402340897|gb|EJU76085.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            NM3081]
          Length = 1144

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1133 (47%), Positives = 736/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP   +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFHAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLSSHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|421563919|ref|ZP_16009731.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NM2795]
 gi|421906283|ref|ZP_16336183.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha704]
 gi|393292584|emb|CCI72102.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha704]
 gi|402339538|gb|EJU74752.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NM2795]
          Length = 1144

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1133 (47%), Positives = 737/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  ++LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELSLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAKAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I + R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANTNQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP     ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDRVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|296313886|ref|ZP_06863827.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC
            43768]
 gi|296839514|gb|EFH23452.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC
            43768]
          Length = 1144

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1133 (47%), Positives = 737/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ-PNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  + P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPECPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  +T      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--STTGDIVDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLVDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++I  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMIGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIIANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N      ++ P  + V P
Sbjct: 1072 LALAPHHDIGKLVQLLAAHQLPDTPRIPLQLSYG-NGKASGRLQVPPKWTVTP 1123


>gi|389606520|emb|CCA45433.1| DNA polymerase III subunit alpha [Neisseria meningitidis alpha522]
          Length = 1144

 Score = 1056 bits (2732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 735/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  ++  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  + +P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDLPRWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|385851920|ref|YP_005898435.1| DNA polymerase III subunit alpha [Neisseria meningitidis M04-240196]
 gi|416184660|ref|ZP_11613094.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M13399]
 gi|416214557|ref|ZP_11622953.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240013]
 gi|325133602|gb|EGC56263.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M13399]
 gi|325143829|gb|EGC66145.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240013]
 gi|325206743|gb|ADZ02196.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M04-240196]
          Length = 1144

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1133 (47%), Positives = 735/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  ++  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  RDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  + +P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDLPRWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLSSHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|218767589|ref|YP_002342101.1| DNA polymerase III subunit alpha [Neisseria meningitidis Z2491]
 gi|433480391|ref|ZP_20437673.1| DNA polymerase III subunit alpha [Neisseria meningitidis 63041]
 gi|433520559|ref|ZP_20477270.1| DNA polymerase III subunit alpha [Neisseria meningitidis 65014]
 gi|433541740|ref|ZP_20498182.1| DNA polymerase III subunit alpha [Neisseria meningitidis 63006]
 gi|14194676|sp|Q9JVX8.1|DPO3A_NEIMA RecName: Full=DNA polymerase III subunit alpha
 gi|121051597|emb|CAM07897.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            Z2491]
 gi|432214162|gb|ELK70068.1| DNA polymerase III subunit alpha [Neisseria meningitidis 63041]
 gi|432251896|gb|ELL07257.1| DNA polymerase III subunit alpha [Neisseria meningitidis 65014]
 gi|432275692|gb|ELL30760.1| DNA polymerase III subunit alpha [Neisseria meningitidis 63006]
          Length = 1144

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1133 (47%), Positives = 739/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DV I N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      +  +PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGTIPLDDQTAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I + R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  LS+LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGELVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|119899497|ref|YP_934710.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119671910|emb|CAL95824.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 1172

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/1097 (47%), Positives = 750/1097 (68%), Gaps = 28/1097 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLRLH+EYSI DG+++I+  I  AA D  PA+ I+DL+NLFG++KFYK A  KG+K
Sbjct: 11   PRFIHLRLHTEYSITDGIVQIDQAIAQAAADGMPAMGISDLANLFGMVKFYKGARGKGVK 70

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D WI NE E  KP R+LL+ K+  GY QLCELL++AY+EN   GRAE+R EW E 
Sbjct: 71   PIIGVDAWIQNEAERDKPYRVLLICKSRKGYGQLCELLTQAYLENKYRGRAEMRREWFE- 129

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            N   D L+ LSGA  GD+G A+ NG  D+AE  A  WS++FP  FYIEIQR   P     
Sbjct: 130  NGAADELLCLSGAFFGDVGQAIVNGNIDLAERLAADWSRLFPGAFYIEIQRAGHPGTETY 189

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I+  + IA+ ++LP+VATHP+QFL   +F AHE R CIA+G +L++ +R + FT++Q  K
Sbjct: 190  IRHALQIANKLDLPVVATHPVQFLTPDDFQAHEARVCIAQGYVLADKRRPRDFTEQQYLK 249

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM  LF DIP A++N +EIAKRC++ ++ GK  LP FPTP  + ++DFL+ ++K GL
Sbjct: 250  SQDEMCALFADIPDALENAVEIAKRCSVTVQLGKNFLPLFPTPDGMTLDDFLVQEAKKGL 309

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ LY  PE  + ++ RY++RL+FE +TII+M F GYFLIV+DFIQW KNN +PVGP
Sbjct: 310  EERLVQLYPHPEEREKQRPRYEERLKFETDTIIQMGFPGYFLIVADFIQWGKNNGVPVGP 369

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC + R RVI+YV++
Sbjct: 370  GRGSGAGSLVAYSLKITDLDPLEYALLFERFLNPERVSMPDFDIDFCQDNRYRVIEYVRE 429

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYGKDAVSQI TFGT+A+K  +RDVGRVLD+ Y  CD +SKL+P +  K ++L+ A + E
Sbjct: 430  RYGKDAVSQIATFGTLASKAVVRDVGRVLDMPYGLCDRLSKLVPIEGAKPVSLARAYEME 489

Query: 483  PQLAERIK---NEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            PQ+ E +K   + E V+ L +LA+ +EG+ R VGMHAGGVLIAP KL +FCPLY  +G  
Sbjct: 490  PQIGEMMKDGNDGEAVQTLWDLAQPLEGLTRGVGMHAGGVLIAPGKLTDFCPLYIADGDD 549

Query: 540  GI-ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
               +SQ+DKDD+E +GL+KFDFLGL  L+I++  + +++++  +  +  L  L   D   
Sbjct: 550  ATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALDYVERLTGERVD--LMSLGFQDPAA 607

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKH 656
            Y +LK ANT A+FQ+ES GMK +LK+  PD FE+IIA+++LYRPGP+   ++ +F  RK 
Sbjct: 608  YQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKK 667

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+   +Y  P  K  L  TYG++VYQEQVMQI+QI+GGY+LG AD+LRRA+GKKK  EM 
Sbjct: 668  GQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMA 727

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            +HR    +GA + G     A ++F+ + KFA YGFNKSH  AYA+++Y+TA+LK H+ + 
Sbjct: 728  KHRATIADGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYHTAWLKAHHCAA 787

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  +D+T+ +KI  +D +    ++ILPP++N S Y F P+       K IRYGL
Sbjct: 788  FMAATMSSDLDNTDTVKIFFEDTLAN-KIAILPPDVNESDYRFVPV-----DRKTIRYGL 841

Query: 836  GAIKGTGKSTIEAIVTERKFGF----FTNLFDFTKRIDKKYINRRIINSLINSGAFDCF- 890
            GA+KG G+  + AI+  R  G     + +LFDF +R+D++ +NRR++ +LI +GA D   
Sbjct: 842  GAVKGVGEPAVRAIIAARASGGAVKPYRDLFDFCERVDRRLVNRRVVEALIRAGAMDTLE 901

Query: 891  ---NEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                  R  ++A++ +A++ AE+      Q  LF +         L +  V  W++++ L
Sbjct: 902  GHRGRDRAQVLATVPLAMEAAEQAAANALQGGLF-DLVPEAAGAALEFADVRPWTERERL 960

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKI 1006
             EEK  +GF LS H F  ++ E+R+F+   L++L+P+     ++G++ E ++K   RGK+
Sbjct: 961  KEEKTAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRDLVMMAGVVMEARVKMGNRGKM 1020

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL--KNIRINAEKIFD 1064
            + + IDD +   EV + +++ + N+  +  +E+L+V GKV  D F     +RI A+++  
Sbjct: 1021 MFVQIDDGTTPREVAVYSEVLDANRGKIVTDEVLVVEGKVSRDDFAGENGLRIIADRLMT 1080

Query: 1065 INVARILYGKKFSVMFN 1081
            +  AR  + +  ++  N
Sbjct: 1081 LGEARSRFARSLTLRVN 1097


>gi|261381235|ref|ZP_05985808.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703]
 gi|284795857|gb|EFC51204.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703]
          Length = 1144

 Score = 1055 bits (2729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1134 (47%), Positives = 741/1134 (65%), Gaps = 22/1134 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SIIDG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSIIDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+   +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R++ LY D E  + EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  P
Sbjct: 303  GLQERMVQLYPD-EAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A+
Sbjct: 422  VREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +   
Sbjct: 482  EAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y
Sbjct: 541  SPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ 
Sbjct: 599  QIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 659  FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+
Sbjct: 833  GTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NA++     NQ  LF  D   +  E +  +    WS+ ++L EEK V+GF L
Sbjct: 893  ANIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLIDASMWSESEKLAEEKTVIGFYL 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  Y  E+ Q  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  V
Sbjct: 951  SGHPFGPYAQEVHQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGLV 1010

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKF 1076
            E++++    E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  
Sbjct: 1011 EIMVSGHTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSL 1070

Query: 1077 SVMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            S++     +I+ L  IL   R    + +P  L Y  N     ++K    + V P
Sbjct: 1071 SLVLAPGHDIARLAAILTAHRLPDTSHIPLQLSYS-NGKASGKLKIAPKWMVTP 1123


>gi|225076963|ref|ZP_03720162.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens
            NRL30031/H210]
 gi|224951716|gb|EEG32925.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens
            NRL30031/H210]
          Length = 1144

 Score = 1054 bits (2726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1133 (47%), Positives = 734/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR   FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPCDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y+KRL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAVKMPEYQKRLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIK--NTTGDIIDVGKIPLDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYCFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVRLVDTPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  +E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++++    E   + LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  S
Sbjct: 1012 IMVSGHTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIIANQVMTLQMARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILL--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L  IL   R    + +P  L Y  N     ++K    + V P
Sbjct: 1072 LALAPGHDIERLATILTTHRLPDTSHIPLQLSYS-NGKASGKLKIAPKWMVTP 1123


>gi|429744328|ref|ZP_19277827.1| DNA polymerase III subunit alpha [Neisseria sp. oral taxon 020 str.
            F0370]
 gi|429163275|gb|EKY05520.1| DNA polymerase III subunit alpha [Neisseria sp. oral taxon 020 str.
            F0370]
          Length = 1143

 Score = 1053 bits (2723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1081 (48%), Positives = 716/1081 (66%), Gaps = 17/1081 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI +V++ A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PAYIPLRLHTEFSITDGMVRIKEVVKKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DVWI N     KP R +L+++N  GYL+L ELL+ AY+ ++ N   AE+  EWL 
Sbjct: 64   PIGAADVWIGNPESPDKPFRAMLIIRNEAGYLRLSELLTAAYVGKDRNLHHAELNPEWLS 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
            +     GLI LSGAHLG++G  + NG  D A   A +++  FP+ FY+E+QR  ++P   
Sbjct: 124  EGD-NSGLICLSGAHLGEVGANLMNGHEDAARAAALKYAAWFPNAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR ++FT  Q 
Sbjct: 183  ASVSGSVKLAEELGLPVVATHPAQFMSEGDFNAHEARVCIAGGWVLTDKKRPREFTSGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     MI+ F D+P A++N++EIAKRCNL +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FLPPETMIERFADLPEALENSVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R+  LY D      +   Y+ RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMAQLYPDEAERAAKMPEYQARLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +D+YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K ++L  A++
Sbjct: 423  RDKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLSLDKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+ L+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQENIK--NTTGDIVDVGKIALDDQAAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  GE F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGEKF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P    +L  TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  EYIHPLLASILEPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQGGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +     P+WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVQLADAPAWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  +SG +T ++     RGKI    ++D S  VE
Sbjct: 952  GHPFGPYAEEVRQIAPTRLGRLKPQESVRLSGFVTAVRTMMGKRGKIAFATLEDQSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            ++I+ Q  E     LK +++LI+  KV  D +     +RI A ++  + +AR  Y +  +
Sbjct: 1012 ILISGQTLENCAGHLKADQVLIIESKVSRDDYGGSDGLRIMANQVMTLQMAREKYARNLT 1071

Query: 1078 V 1078
            +
Sbjct: 1072 L 1072


>gi|418288962|ref|ZP_12901369.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NM233]
 gi|418291221|ref|ZP_12903259.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NM220]
 gi|372200233|gb|EHP14343.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NM220]
 gi|372200657|gb|EHP14701.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NM233]
          Length = 1144

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1133 (47%), Positives = 739/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GY +L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLIIRNDAGYQRLSELLTEAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT +Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++ +D+LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRDDYLIKLSNK 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  + +P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDLPRWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+ Q  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVCQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++ +Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGSQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLSSHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|329118563|ref|ZP_08247267.1| DNA-directed DNA polymerase III alpha subunit [Neisseria
            bacilliformis ATCC BAA-1200]
 gi|327465298|gb|EGF11579.1| DNA-directed DNA polymerase III alpha subunit [Neisseria
            bacilliformis ATCC BAA-1200]
          Length = 1142

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1111 (47%), Positives = 731/1111 (65%), Gaps = 17/1111 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI +V++ A     PAL I+DL N F ++KFYK+    GIK
Sbjct: 4    PVYIPLRLHTEFSITDGMVRIKEVVKKAQEYGFPALGISDLMNEFALVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N  GYL+L ELL+ AY+ E  N   AE+  EWL+
Sbjct: 64   PVGAADVWIGNPAAPDKPFRAMLIIRNEAGYLRLSELLTAAYVGEGRNLHHAELNPEWLD 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
                  GLI LSGAHLG++G+ + NG  D A   A +++  FP+ FY+E+QR  ++P   
Sbjct: 124  SGD-NSGLICLSGAHLGEMGVNLLNGNEDAARAAALKYAAWFPNAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCN+ +  GK  LP FPTP  ++++D+L+  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+K
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK       +  +  +PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKATTGDIVD--VGTIPLDDQAAYK 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  +D+L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEDILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G++ LPP+IN S Y F P    DG +K+IRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGITFLPPDINESSYRFVP----DG-NKQIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K ++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAAREAGGKFTGLLDFCERVGKDHMNRRTLEALIRGGAFDSIEPNRAMLMA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A++NA++     NQ  LF  D  ++  E +     P+WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMENADQKAANANQGGLF--DMMDDAIEPVKLSAAPAWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  YE EIR+F P+ L  LK   S  V+G  T ++      G+  I+ ++D S   E
Sbjct: 952  GHPFAPYEQEIRRFAPVSLGRLKTQDSVRVAGFATGVRTMNGKSGRFAIVQLEDRSGFAE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF-LKNIRINAEKIFDINVARILYGKKFSV 1078
            V ++ +L E+ +  LK +++LI   +V    +    +RI A  I  +  AR  + +  ++
Sbjct: 1012 VSVSGELLEEARERLKADQILIAECRVSHSDYNGGELRIRANSIMTLPQAREKFARSLTL 1071

Query: 1079 MFNRTFNISILKKILLRF-KCKNGLPFVLYY 1108
                  +I  L  +L    K   G+P  L Y
Sbjct: 1072 TATPEADIPALAALLESARKTGGGIPLRLRY 1102


>gi|268596113|ref|ZP_06130280.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268549901|gb|EEZ44920.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 1144

 Score = 1050 bits (2715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1133 (47%), Positives = 737/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDCLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  REKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             +PQ+ + +   EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AQPQI-QELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTAGDIVDVGKIPLDDQTAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D+S   E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDSSGQAE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGRLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|59800539|ref|YP_207251.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae FA 1090]
 gi|240013392|ref|ZP_04720305.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            DGI18]
 gi|240120463|ref|ZP_04733425.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID24-1]
 gi|59717434|gb|AAW88839.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA
            1090]
          Length = 1144

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1133 (47%), Positives = 737/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDCLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  REKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             +PQ+ + +   EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AQPQI-QELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTAGDIVDVGKIPLDDQTAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D+S   E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDSSGQAE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|194097697|ref|YP_002000738.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            NCCP11945]
 gi|240015834|ref|ZP_04722374.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            FA6140]
 gi|254492986|ref|ZP_05106157.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291]
 gi|268594063|ref|ZP_06128230.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598240|ref|ZP_06132407.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11]
 gi|268600585|ref|ZP_06134752.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18]
 gi|268602902|ref|ZP_06137069.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1]
 gi|268681369|ref|ZP_06148231.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332]
 gi|268683537|ref|ZP_06150399.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679]
 gi|268685843|ref|ZP_06152705.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035]
 gi|291044605|ref|ZP_06570314.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|293397724|ref|ZP_06641930.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62]
 gi|385334953|ref|YP_005888900.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            TCDC-NG08107]
 gi|193932987|gb|ACF28811.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            NCCP11945]
 gi|226512026|gb|EEH61371.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291]
 gi|268547452|gb|EEZ42870.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582371|gb|EEZ47047.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11]
 gi|268584716|gb|EEZ49392.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18]
 gi|268587033|gb|EEZ51709.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1]
 gi|268621653|gb|EEZ54053.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332]
 gi|268623821|gb|EEZ56221.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679]
 gi|268626127|gb|EEZ58527.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035]
 gi|291011499|gb|EFE03495.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291611670|gb|EFF40739.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62]
 gi|317163496|gb|ADV07037.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            TCDC-NG08107]
          Length = 1144

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1133 (47%), Positives = 737/1133 (65%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P+   DVWI N     KP R +L+++N+ GYL+L ELL++AY+ ++ N   AE+  EWLE
Sbjct: 64   PVGAADVWIGNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQDRNIHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M++ F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D LI  S  
Sbjct: 243  FIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDCLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG  AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L +A+K
Sbjct: 423  REKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLDDAMK 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             +PQ+ + +   EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  AQPQI-QELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTAGDIVDVGKIPLDDQTAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I+  R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D+S   E
Sbjct: 952  GHPFGPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDSSGQAE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123


>gi|422349992|ref|ZP_16430880.1| DNA polymerase III, alpha subunit [Sutterella wadsworthensis
            2_1_59BFAA]
 gi|404657841|gb|EKB30723.1| DNA polymerase III, alpha subunit [Sutterella wadsworthensis
            2_1_59BFAA]
          Length = 1142

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1153 (45%), Positives = 750/1153 (65%), Gaps = 21/1153 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYS+ DGL+RI+  I         AL ITDL N+FG ++FY  A + G+K
Sbjct: 4    PRFVHLRLHSEYSVTDGLVRIDPAIHKTLEMGGVALGITDLMNVFGGLRFYTHALSAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCDV I N      P R+     N+ GY  LC LL+KA++E  +  R +I  +WL+ 
Sbjct: 64   PILGCDVKIKNNKFPDNPYRMTFYCMNHTGYHSLCVLLTKAFLEGQDPYRGQICDDWLDV 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                DGLIAL+G   G +   +  G    A     RW K+FP+  YIE+QR  +P    Q
Sbjct: 124  PGATDGLIALTGGPKGRLSQLIDTGSERQAGGIVGRWKKLFPNRLYIELQRANRPKDENQ 183

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
                + +AS  ++P+VATHP+QFL+  +F AHEVR CIA G  +++ +R K +T+EQ  K
Sbjct: 184  NAFLVTVASRFDVPVVATHPVQFLEPQDFEAHEVRCCIAGGFTITDPRRDKSYTREQYLK 243

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M +LF D+PSA+ N++ IAKRCNL     KP+LP FPTP  ++++D++   S+ GL
Sbjct: 244  SEEQMCELFKDVPSALANSVIIAKRCNLDGVLSKPQLPLFPTPDGMSLDDYMDHLSREGL 303

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY D ++   ++  Y +RL +E+  I KM F GYFLIV DFI W+K + +PVGP
Sbjct: 304  EKRLAFLYDDEKVRDAKRPEYVERLDYELGIIKKMQFPGYFLIVQDFINWSKTHGVPVGP 363

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC   RDR I+YVK+
Sbjct: 364  GRGSGAGSLVAYSLGITDLDPLKFDLLFERFLNPERVSMPDFDVDFCQYNRDRTIEYVKE 423

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG DAVSQI TFGT+ AK  +RDV RVL++ +S  D ++KLIP +PGK +TL +AIKE 
Sbjct: 424  TYGADAVSQIATFGTLGAKAVVRDVARVLNVPFSKADRLAKLIPMQPGKNVTLDDAIKEV 483

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT-GI 541
            P+  E I++++E ++L+ +AK +EGI RN+GMHAGGVLIAP  L +FCPLY  +G     
Sbjct: 484  PEFREAIESDDEYKELMRVAKGLEGITRNLGMHAGGVLIAPGALTDFCPLYNSDGAPENT 543

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            ISQ+DK D+E +GL+KFDFLGLTTLSIL K   +I K+  +   F L ++P+ D++TY  
Sbjct: 544  ISQFDKKDVENVGLVKFDFLGLTTLSILAKCKEYIDKLYPE-REFELERIPVTDEETYRC 602

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
             + ANT AVFQ ES+GM+ +L++A+PD  E+++AL +LYRPGPMDLI +F  RK G E  
Sbjct: 603  FQNANTAAVFQFESEGMRQLLRQARPDRLEDLVALNALYRPGPMDLIPSFIARKFGREKV 662

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y D R   VLSETYGIMVYQEQVM++AQ++GGYSLG ADLLRRA+GKK   EM   R  
Sbjct: 663  EYLDERMAPVLSETYGIMVYQEQVMRVAQVVGGYSLGGADLLRRAMGKKNVEEMKRQRAV 722

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA + G+ +  A EIFN +EKFAGYGFNKSHA AY+ ++Y TAYLKTH++S FMAAN
Sbjct: 723  FVKGAGERGVKESVATEIFNLMEKFAGYGFNKSHAAAYSYVAYQTAYLKTHFTSCFMAAN 782

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            L + MD  +K+K L+ DA +  G+ ILPP+INLS ++F      D KH  IR+GLG +KG
Sbjct: 783  LCMVMDQGDKMKALLDDA-RANGIEILPPDINLSDWFF---TAPDEKH--IRFGLGGVKG 836

Query: 841  TGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
             G+  +E ++  R K G FT+LFD T R+    +N R +  LI  GAFD  N  R  L  
Sbjct: 837  LGRQQVEDMMATRIKDGPFTDLFDVTARVSG--LNSRNLEGLIRVGAFDSLNPDRGFLFG 894

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            ++  A+   +       Q SLF   D+  +K  +N+V+ PSWS++++L EEK  LGF LS
Sbjct: 895  NVSQAMTAGQAVAASEGQDSLFA--DDVQVKRIVNWVEAPSWSERRKLKEEKGALGFWLS 952

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTY-SCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
             H + +Y+ E+  +  + L +++P+  S  ++G++T +++    RG++ ++ +DD +  +
Sbjct: 953  GHPYELYQHEVAHYTSLALGQIQPSRDSVKLAGVVTNVRVVQGKRGRMGVVQLDDGTAVL 1012

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            EV+  ++ +EK KN    ++++ + G+V  D F K + +N E    ++  R +      V
Sbjct: 1013 EVVCFSEAWEKLKNKFASDDVVCIEGRVRYDEFSKRMSVNVENAMSLDEFRSMAASCLRV 1072

Query: 1079 MFNRTF--NISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLAL 1136
              +     ++  ++ IL   +   G+   L     ++ K   +  L + V  +D+L++ L
Sbjct: 1073 DIDGRVKHDVRRIESILRGSERDTGVTVALDI---RTKKASGRMYLPFTVGNVDELRMEL 1129

Query: 1137 INLG-LYNAIIEY 1148
             N G +    IEY
Sbjct: 1130 RNSGEVTGTEIEY 1142


>gi|225025259|ref|ZP_03714451.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834]
 gi|224942017|gb|EEG23226.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834]
          Length = 1143

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/1114 (47%), Positives = 743/1114 (66%), Gaps = 20/1114 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LR H+E+SI DG LRI ++++ A+    PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PVYIPLRQHTEFSITDGTLRIKELVKKASAFGLPALGISDLMNTFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P++G DVW+ N    ++P R +LLV+N  GY +LCELL++AY+  + N   AE+  +WL 
Sbjct: 64   PVVGADVWVANPENPEQPFRAMLLVRNEAGYRRLCELLTRAYVGTDRNVAHAELEPQWLA 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
            +    +GLI LSGAHLG++G  + NG +  A   A+++++ FPD FY+E+QR  ++P   
Sbjct: 124  EGG-NEGLICLSGAHLGEVGRQLMNGHDSAACAAAQKYAQWFPDAFYLELQRLPEKPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+ + LP+VATHP QFL   +F AH+ R CIA G +L++ +R + F   Q 
Sbjct: 183  TSVSGSLKLAAELGLPVVATHPAQFLNPDDFKAHDARVCIAGGWVLADKRRPRDFVAGQY 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F +  E+   F D+P A+QNT+EIAKRCNL L  GK  LP+FPTP  ++++D+L   S  
Sbjct: 243  FASPEEVAARFADLPEALQNTVEIAKRCNLTLTLGKNFLPQFPTPDGMSLDDYLAHLSNQ 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL  LY D E  + +KL  Y+ RL FE+ TI++M F GYFLIV+DFI WAKNN  P
Sbjct: 303  GLRERLAALYPD-EAEREQKLPEYQARLDFELGTIVQMGFPGYFLIVADFINWAKNNGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYSLKITDLDPLRYALLFERFLNPERVSMPDFDIDFCQNNRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+ +YG +AVSQIVTFGT+++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A+
Sbjct: 422  VRQKYGFEAVSQIVTFGTLSSKAVIRDVGRVLELPFGVCDRLSKLIPLEANKPLSLEKAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP++A ++  EEE  +L+ELAK++E + R +GMHAGGVLIAP K+ +FCP+Y+ +   
Sbjct: 482  EAEPEIA-KVLEEEEAEELMELAKKLEDLTRGLGMHAGGVLIAPGKISDFCPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E+IGL+KFDFLGL  L+I++    FI +  T      +N + L D+  Y
Sbjct: 541  SPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQEFIAQ--TTGERIDVNHIDLTDQQAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + +KANT AVFQ ES GMK ML +A     EEIIA +SLYRPGPMDLI +F  R  G  
Sbjct: 599  EVFRKANTTAVFQFESTGMKKMLAQANTTKLEEIIAFVSLYRPGPMDLIPDFIARMKGAR 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y     + VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM +HR+
Sbjct: 659  FEYMHLLLEPVLQPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPEEMAKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+++ KA+EIF+ +EKFAGYGFNKSHA AYAL++Y TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGIAREKADEIFDYMEKFAGYGFNKSHAAAYALVAYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K+   DA +  G+  LPP++N S Y+F P    D +H +IRY LGAIK
Sbjct: 779  TMSSELDNTDQLKLFYDDA-RDNGIRFLPPDVNHSGYHFQP----DAQH-RIRYALGAIK 832

Query: 840  GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +EAIV  R + G F +LFDF +R+ +++INRR I +L+  GAFD     R  L+
Sbjct: 833  GTGEAAVEAIVAAREEGGAFKSLFDFCERVSRQHINRRTIEALVRGGAFDSIEPNRARLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+ NAE+ ++  NQ  LF  D   +    L  + VP+W + + L EEK+ +GF  
Sbjct: 893  ANIDLAMSNAEQQEENANQGGLF--DMVEDAIAPLEMIDVPAWGEAELLAEEKQAIGFYF 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F   E E+RQF P  LS+LKP  +  V+G  T ++     RGKI  I ++D     
Sbjct: 951  SGHPFGPAEKEVRQFAPTRLSQLKPNDNVRVAGFATAIRSMVGKRGKIAFITLEDTGGKA 1010

Query: 1019 EVIINNQLYEK-NKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKK 1075
            EV+++ +  E+  ++  + +++LI   ++  D +     +RI A +++ +  AR  Y + 
Sbjct: 1011 EVMVSGETLEQLGRDTPRADQVLIAECRISRDDYGGEDGLRIIANRVYTLQEARSHYARA 1070

Query: 1076 FSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC 1109
             ++      NI  L ++L R      +P  L+Y 
Sbjct: 1071 LTLHLAPHHNIPCLAELLQRSGEGKRVPLRLHYA 1104


>gi|349573711|ref|ZP_08885684.1| DNA-directed DNA polymerase III alpha subunit [Neisseria shayeganii
            871]
 gi|348014667|gb|EGY53538.1| DNA-directed DNA polymerase III alpha subunit [Neisseria shayeganii
            871]
          Length = 1145

 Score = 1038 bits (2684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1125 (47%), Positives = 745/1125 (66%), Gaps = 23/1125 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LR H+E+SI DG LRI ++++ AA    PAL I+DL N FG++KFYK+    GIK
Sbjct: 4    PLYIPLRQHTEFSITDGTLRIKELVKKAAAFGLPALGISDLMNTFGLVKFYKACRGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            P++G DVW+ N  + ++P R LLLVKN  GY +LCELL++AY+ E+ N   AE+   WL 
Sbjct: 64   PVMGADVWLANAAQPEQPFRALLLVKNEAGYRRLCELLTRAYVGEDRNRSHAELEPAWLA 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
            +     GLI LSGAHLG++G  + NG    A+  A++++  FPD FY+E+QR  ++P   
Sbjct: 124  EGD-NSGLICLSGAHLGEVGRLLLNGHAAEAKAAAQKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+ +NLP+VATHP QFL   +F AH+ R CIA G +LS+ KR + F   Q 
Sbjct: 183  AAVSGSVALAAELNLPVVATHPAQFLNPDDFKAHDARVCIAGGWVLSDKKRPRDFAPGQY 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F +  E+   F D+P A+QNT+EIAKRCNL L  GK  LP+FPTP  ++++D+LI  +  
Sbjct: 243  FASPEEVTARFADLPEALQNTVEIAKRCNLTLTLGKNFLPQFPTPDGMSLDDYLIQLANE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R+  LY + E  + ++L  Y++RL FE++TII+M F GYFLIV DFI WAK N  P
Sbjct: 303  GLQQRMAQLYPN-EQERADRLPEYQQRLDFELKTIIQMGFPGYFLIVQDFINWAKQNGCP 361

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L+ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   R RVI+Y
Sbjct: 362  VGPGRGSGAGSLVAYALNITDLDPLKYALLFERFLNPERVSMPDFDIDFCQSNRGRVIEY 421

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+D+YG  AVSQIVTFGT+++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A+
Sbjct: 422  VRDKYGFAAVSQIVTFGTLSSKAVIRDVGRVLELPFGLCDKLSKLIPLEANKPLSLEKAM 481

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EP++A+ I+ EE   +L+ELAK++E + R +GMHAGGVLIAP K+ +FCP+Y+ +   
Sbjct: 482  AAEPEIAQLIEEEEAE-ELMELAKKLEDLTRGLGMHAGGVLIAPGKIADFCPVYQADESA 540

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+E+IGL+KFDFLGL  L+I++    FI+  +T      +N++ L D+  Y
Sbjct: 541  SPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQEFIR--STTGEEVDVNRISLEDQTAY 598

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + +KANT AVFQ ES GMK MLK A+   FEE+IA +SLYRPGPMD I +F  R  G  
Sbjct: 599  EVFRKANTTAVFQFESTGMKKMLKTARTTKFEELIAFVSLYRPGPMDNIPDFVARMKGGK 658

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + VL+ TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM +HR+
Sbjct: 659  FEYLHPLLEPVLAPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPEEMAKHRE 718

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G+ + KA+EIF+ +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 719  IFAEGAAKQGIDRAKADEIFDYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAA 778

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  +D+T+++K    DA    G+  LPP++N S Y F P        ++IRY LGAIK
Sbjct: 779  TMSSELDNTDQLKHFYDDACAN-GIRFLPPDVNASGYRFIP-----NNRREIRYALGAIK 832

Query: 840  GTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            GTG++ +EAIV  R  G  F  LFDF +R+ K++INRR I +L+ +GAFD     R  L+
Sbjct: 833  GTGEAAVEAIVAARDSGGPFAGLFDFCERVGKQHINRRTIEALVRAGAFDRLEPNRAKLL 892

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            A+ID+A+  AE+     NQ  LF  D   +    +   +VP+WS+  +L+EEK+ +GF  
Sbjct: 893  ANIDLAMTQAEQKADNANQGGLF--DFIEDAIAPVEMAEVPAWSEATQLMEEKQAMGFYF 950

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
            S H F  +  E+RQ  P  L++L+P     V+G  T ++     RGKI  + ++D    V
Sbjct: 951  SGHPFGPFAAEVRQLAPTPLAKLEPKDGVRVAGFATAVRSMMGKRGKITFVTLEDEGGRV 1010

Query: 1019 EVIINNQLYEK-NKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKK 1075
            EV++  +  E+  ++ L+ +++LI   +V +D +     +RI A ++  +  AR  Y + 
Sbjct: 1011 EVMVTGETLEQIGRDTLRADQVLIAECRVSKDDYGGEDGLRIVANQVHTLQEARSRYARV 1070

Query: 1076 FSVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEM 1118
             ++      +I  L  +L   +   G  +P  L YC N + + E+
Sbjct: 1071 LTLKLEPQHDIRRLAGLLREHQGGEGKRVPLRLQYC-NATARGEL 1114


>gi|288575454|ref|ZP_06393727.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996]
 gi|288567673|gb|EFC89233.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996]
          Length = 1124

 Score = 1036 bits (2678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1117 (47%), Positives = 729/1117 (65%), Gaps = 22/1117 (1%)

Query: 20   LLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKK 79
            ++RI  +I  A     PAL I+DL N FG++KFYK+  + GIKP+   DVWI N     K
Sbjct: 1    MVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIKPVGAADVWIGNPNAPDK 60

Query: 80   PSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLEKNKYQDGLIALSGAHLG 138
            P R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE N    GLI LSGAH G
Sbjct: 61   PFRAMLVIRNDAGYLRLSELLTTAYVGKDRNVHHAELNPEWLE-NGDNSGLICLSGAHYG 119

Query: 139  DIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMNFQIQQFINIASNINLPI 197
            ++G+ + NG  D A   A +++  FPD FY+E+QR  ++P     +   + +A  + LP+
Sbjct: 120  EVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPV 179

Query: 198  VATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSA 257
            VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q F     M++ F D+P A
Sbjct: 180  VATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQFFIPPETMLERFADLPEA 239

Query: 258  IQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYK 317
            ++NT+EIAKRCN+ +  GK  LP FPTP  ++++D+L+  S  GL++R++ LY D E  +
Sbjct: 240  LENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNEGLQERMVQLYPD-EAER 298

Query: 318  CEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSL 376
             EK+  Y++RL FE+  II+M F GYFLIV DFI WAK +  PVGPGRGSGA SLVAYSL
Sbjct: 299  AEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSL 358

Query: 377  SITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFG 436
             ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV+++YG +AVSQIVTFG
Sbjct: 359  KITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFG 418

Query: 437  TMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVR 496
            TM++K  IRDVGRVL+L ++ CD +SKLIP +  K + L +A+K EPQ+ E I+  EE  
Sbjct: 419  TMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIE-AEEAD 477

Query: 497  QLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLI 556
            +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +     +S YDK D+E++GL+
Sbjct: 478  ELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLV 537

Query: 557  KFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQ 616
            KFDFLGL  L+I++     IK  NT      +  +PL+D+  Y + + ANT AVFQ ES 
Sbjct: 538  KFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGTIPLDDQLAYKIFRDANTTAVFQFEST 595

Query: 617  GMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYG 676
            GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F Y  P  + +L+ TYG
Sbjct: 596  GMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYG 655

Query: 677  IMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKAN 736
            IMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ F  GA K G+S+ K++
Sbjct: 656  IMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSD 715

Query: 737  EIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVK 796
            EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA +S  +D+T+++K    
Sbjct: 716  EIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYD 775

Query: 797  DAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFG 856
            D  +  G+  LPP+IN S Y F P       + KIRY LGAIKGTG++ +E+I+  R+ G
Sbjct: 776  DC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKGTGEAAVESIIAARQSG 829

Query: 857  F-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFI 915
              FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A+ID+A+ NA++     
Sbjct: 830  GKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNADQKAANA 889

Query: 916  NQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIP 975
            NQ  LF  D   +  E +  V  P WS+ ++L EEK V+GF LS H F  Y  E+RQ  P
Sbjct: 890  NQGGLF--DMMEDAIEPVQLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAP 947

Query: 976  IYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILK 1035
              L  LKP  S  ++G +T ++     RGKI  + ++D S  +E++++ Q  E   + LK
Sbjct: 948  TKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIEIMVSGQTLENCADYLK 1007

Query: 1036 ENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKIL 1093
             +++LI+  KV  D +     +RI A ++  + +AR  Y +  S+      +I+ L  IL
Sbjct: 1008 SDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSLSLALAPGHDIARLATIL 1067

Query: 1094 L--RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
               R    + +P  L Y  N       + P  + V P
Sbjct: 1068 TAHRLPDTSHIPLQLSYS-NGKASGRFQVPPKWMVTP 1103


>gi|161869391|ref|YP_001598558.1| DNA polymerase III subunit alpha [Neisseria meningitidis 053442]
 gi|161594944|gb|ABX72604.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442]
          Length = 1109

 Score = 1033 bits (2671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1100 (47%), Positives = 720/1100 (65%), Gaps = 20/1100 (1%)

Query: 36   PALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQ 95
            PAL I+DL N FG++KFYK+  + GIKPI   DVWI N     KP R +L+++N+ GYL+
Sbjct: 2    PALGISDLMNEFGLVKFYKACRSAGIKPIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLR 61

Query: 96   LCELLSKAYI-ENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAEN 154
            L ELL++AY+ ++ N   AE+  EWLE N    GLI LSGAH G++G+ + NG  D A  
Sbjct: 62   LSELLTEAYVGKDRNIHHAELNPEWLE-NGDNSGLICLSGAHYGEVGVNLLNGNEDAARA 120

Query: 155  FARRWSKIFPDNFYIEIQRF-KQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLA 213
             A +++  FPD FY+E+QR  ++P     +   + +A  + LP+VATHP QF+ + +F A
Sbjct: 121  AALKYAAWFPDAFYMELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNA 180

Query: 214  HEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLE 273
            HE R CIA G +L++ KR + FT +Q F     M++ F D+P A++NT+EIAKRCNL + 
Sbjct: 181  HEARVCIAGGWVLTDKKRPRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHIT 240

Query: 274  FGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIET 333
             GK  LP FPTP  ++ +D+LI  S  GL++R++ LY D      +   Y++RL FE+  
Sbjct: 241  LGKNFLPLFPTPDGLSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNI 300

Query: 334  IIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERF 393
            II+M F GYFLIV DFI WAK +  PVGPGRGSGA SLVAYSL ITD+DPL Y LLFERF
Sbjct: 301  IIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERF 360

Query: 394  LNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDL 453
            LNP R+SMPDFD+DFC   R RVI+YV+++YG  AVSQIVTFGTM++K  IRDVGRVL+L
Sbjct: 361  LNPERVSMPDFDVDFCQSNRGRVIEYVREKYGAKAVSQIVTFGTMSSKAVIRDVGRVLEL 420

Query: 454  RYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVG 513
             +  CD +SKLIP +  K + L +A+K EPQ+ E I+  EE  +LI LAK++E + R +G
Sbjct: 421  PFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIE-AEEADELITLAKKLEDLTRGLG 479

Query: 514  MHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTI 573
            MHAGGVLIAP K+ ++ P+Y+ +     +S YDK D+E++GL+KFDFLGL  L+I++   
Sbjct: 480  MHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQ 539

Query: 574  YFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEI 633
              IK  NT      + K+PL+D+  Y + + ANT AVFQ ES GMK MLK A    FEE+
Sbjct: 540  NNIK--NTTGDIIDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEEL 597

Query: 634  IALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGG 693
            IA +SLYRPGPMD I +F  R  G+ F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GG
Sbjct: 598  IAFVSLYRPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGG 657

Query: 694  YSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKS 753
            YSLG ADLLRRA+GKKK  EM++HR+ F  GA K G+S+ K++EIFN +EKFAGYGFNKS
Sbjct: 658  YSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKS 717

Query: 754  HATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINL 813
            HA AYAL+SY TA+LK HY + FMAA +S  +D+T+++K    D  +  G+  LPP+IN 
Sbjct: 718  HAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDC-RANGIEFLPPDINE 776

Query: 814  SKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKY 872
            S Y F P  +      KIRY LGAIKGTG++ +E+I + R+ G  FT L DF +R+ K++
Sbjct: 777  SDYRFTPYPD-----MKIRYALGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEH 831

Query: 873  INRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEY 932
            +NRR + +LI  GAFD     R ML+A+ID+A+ NA++     NQ  LF  D   +  E 
Sbjct: 832  MNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNADQKAANTNQGGLF--DMMEDAIEP 889

Query: 933  LNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGI 992
            +  V  P WS+ ++L EEK V+GF LS H F  Y  E+RQ  P  LS+LKP  S  ++G 
Sbjct: 890  VRLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGF 949

Query: 993  ITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF- 1051
            +T ++     RGKI  + ++D S  VE+++  Q  E   + LK +++LI+  KV  D + 
Sbjct: 950  VTAVRTMMGKRGKIAFVSLEDLSGQVEIMVGGQTLENCADCLKADQVLIIESKVSRDDYG 1009

Query: 1052 -LKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNG--LPFVLYY 1108
                +RI A ++  +  AR  Y +  S+      +I  L ++L   +  +   +P  L Y
Sbjct: 1010 GGDGLRILANQVMTLQTARERYARSLSLALAPHHDIGGLVQLLAAHQLPDTPRIPLQLSY 1069

Query: 1109 CINKSIKYEMKFPLNYKVQP 1128
              N+     ++ P  + V P
Sbjct: 1070 A-NEKASGRLQVPPKWTVTP 1088


>gi|378823532|ref|ZP_09846155.1| DNA polymerase III subunit alpha [Sutterella parvirubra YIT 11816]
 gi|378597656|gb|EHY30921.1| DNA polymerase III subunit alpha [Sutterella parvirubra YIT 11816]
          Length = 1145

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1073 (46%), Positives = 723/1073 (67%), Gaps = 17/1073 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLHSEYS+ DG++RI+  I         ALA+TDL N+FG ++FY  A   G+K
Sbjct: 4    PKFVHLRLHSEYSVTDGIVRIDPAIHKMMERGGGALALTDLMNIFGGLRFYTHALAAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCD+ I N  +  KP R+ +L  N  GY  L  LL+KA++ + +  R +I  +W EK
Sbjct: 64   PILGCDLKIRNGNDAAKPYRMGVLCMNREGYHSLSVLLTKAFLTDDDAFRGQIDPKWFEK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                 GLIALSG   G++G  + N R  +A+  A+RW +IF D FY+E+QR  +   +  
Sbjct: 124  GG-DAGLIALSGGAEGELGALLLNKRWKLADEAAQRWKRIFGDRFYVEVQRAGRHGDDLA 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
              +  N+A    + +VATHP+QFL   +F AHEVRT IAEG  L + +R K+++ EQ  K
Sbjct: 183  TARLANLAVEHGIAVVATHPVQFLDPEDFEAHEVRTSIAEGYTLQDPRRTKRYSPEQYLK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EMI+LF D+P+A+ N++EIAKRCNL     KP+LP FPTP  ++++D++   S  GL
Sbjct: 243  TEEEMIELFADMPAAVANSVEIAKRCNLDGVLSKPQLPLFPTPDGMSLDDYIDLLSHQGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  LY D ++   ++  Y++RL +E+  I  M F GYFLIV DFI W+K N IPVGP
Sbjct: 303  ERRLEFLYPDEKVRNEKRPAYEERLTYELGIIKGMKFPGYFLIVQDFINWSKKNGIPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC   RDR I YVK 
Sbjct: 363  GRGSGAGSLVAYSLGITDLDPLHFDLLFERFLNPERVSMPDFDVDFCQYNRDRTIDYVKR 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG +AVSQIVTFGT+ AK  +RDVGR LD+ Y   D+++KLIP +PGK ITL +A+++ 
Sbjct: 423  TYGAEAVSQIVTFGTLGAKAVVRDVGRALDVPYMKTDALAKLIPQQPGKNITLDDALRDV 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT-GI 541
            P+  E +++++E R+++ LAK +EG+ RN+GMHAGGVLIAP +L +FCPLY  +G     
Sbjct: 483  PEFKEAVESDDEYREILRLAKPLEGLTRNLGMHAGGVLIAPGRLTDFCPLYNPDGKPENT 542

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            + Q+DK D+E +GL+KFDFLGLTTLSI+ + + +I K++ +   F ++++P++D +TY L
Sbjct: 543  VCQFDKKDVENVGLVKFDFLGLTTLSIITRAVSYIDKLHPE-AKFDIDRIPVDDAETYAL 601

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
             + ANT AVFQ ES+GM+ +LK+AKPD  E+++AL +LYRPGPMDLI +F  RK G E  
Sbjct: 602  FQNANTEAVFQFESEGMRALLKQAKPDRLEDLVALNALYRPGPMDLIPSFIARKFGREKV 661

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y DPR + VL+ETYGIMVYQEQVM++AQ++GGYSLG ADLLRRA+GKK   EM   R  
Sbjct: 662  EYLDPRMESVLAETYGIMVYQEQVMRVAQVVGGYSLGGADLLRRAMGKKNVEEMKRQRAV 721

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA + G+S+  A EIFN +EKFAGYGFNKSHA AY+ ++Y TAYLKTH+ + FMAAN
Sbjct: 722  FTQGAGERGVSEETATEIFNLMEKFAGYGFNKSHAAAYSYVAYQTAYLKTHHIAAFMAAN 781

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            L + MD + KIK L+ DA +  G+ +LPP++N S+++F P  E     K IR+GLG IKG
Sbjct: 782  LCMVMDQSEKIKKLIDDAAEN-GVKLLPPDVNESEWFFVPPDE-----KSIRFGLGGIKG 835

Query: 841  TGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
              ++  + IV  R K G F ++FDF  R+    +N R ++ LI +GAFD  +  R  L A
Sbjct: 836  MARTVADDIVAARKKGGPFVDIFDFAARVPG--MNGRFLDGLIRAGAFDSIDPDRGKLHA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            + + A++ ++  +    Q SLF  D+       +N++   +WS +++L EEK  LG+ LS
Sbjct: 894  NKEQAIRASQTIRASEGQGSLF--DEPGETVRIVNWLPAAAWSMRRKLAEEKSALGYWLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPT--YSCTVSGIITELKLKTTYRGKILIIVIDDNSNS 1017
             H++  Y  E++ F P  L ++ P    +  ++GII+ ++   + RG + I+ IDD +  
Sbjct: 952  GHLYDAYREELKSFAPKSLKDIVPGGRAASKMAGIISSVRQVQSKRGPMGIVTIDDGTAV 1011

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARI 1070
            V+++   +++ K +  L  + ++ V+G+   D F K + ++ + +  ++  R+
Sbjct: 1012 VDLMCFGEVWSKYRRQLTPDAVVCVTGRARYDEFSKRLSVSLDDVMTVDKFRV 1064


>gi|387127382|ref|YP_006295987.1| DNA polymerase III subunit alpha [Methylophaga sp. JAM1]
 gi|386274444|gb|AFI84342.1| DNA polymerase III alpha subunit [Methylophaga sp. JAM1]
          Length = 1161

 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/1169 (44%), Positives = 762/1169 (65%), Gaps = 36/1169 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  QF+HL LH++YS++DGL+RI  +++AAA    PA+AITD  NLF  +K Y +A   G
Sbjct: 1    MTSQFVHLHLHTDYSLVDGLVRIKPLVKAAAASGMPAIAITDQHNLFAAVKLYSAAMQAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI+G D+ + +  ++KK  R++LL     GY  L  L+SKAY E  + G   +  EWL
Sbjct: 61   VKPILGADIRLRDSNDSKKSLRMVLLCSTMEGYHNLSRLISKAYTEGQHLGVPMLEPEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     DGLI LSG   G +G  +   R   AE  AR W ++FP+ FY+E+ R  + +  
Sbjct: 121  DGQT--DGLICLSGGREGLLGRDLLGNRQAEAEELARHWMQLFPNRFYLELVRTGRDDEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ + +AS ++LP+VAT+ ++FL   +F AHE + CI EG +L + +R + ++++Q 
Sbjct: 179  RYIQQALQLASELDLPVVATNDVRFLTPDQFEAHEAKVCINEGRLLDDPRRPRMYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM++LF DIP AI NT+EIAKRCN++L  G+  LP FP P  + + +F   +S  
Sbjct: 239  LRSPEEMVRLFADIPEAITNTVEIAKRCNVELTLGEHYLPDFPVPAGMTLAEFFSKESFE 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +RL  L+ D    + ++  Y+ RLQ E++ I +M F GYFLIV+DFI+WAKNN +PV
Sbjct: 299  GLAERLPVLFPDETEREQKRAEYESRLQIELDVINEMGFPGYFLIVADFIRWAKNNGVPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITDIDPL Y+LLFERFLNP R+S+PDFD+DFC +GRDRVI YV
Sbjct: 359  GPGRGSGAGSLVAYALKITDIDPLQYDLLFERFLNPERVSLPDFDVDFCMDGRDRVIDYV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG+D VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KL+PF+    +TLS A++
Sbjct: 419  SRHYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFE--LKMTLSKALE 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +EPQL ER   EEEVR LI+LA Q+EG+ RNVG HAGGV+IAP KL ++ PLY ++   G
Sbjct: 477  QEPQLKERYDREEEVRNLIDLALQLEGLTRNVGKHAGGVVIAPKKLTDYTPLYCEQNGAG 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDKDT 598
            ++SQYDKDD+E +GL+KFDFLGL TL+++D  +  +K +    +    ++  LPL+DK +
Sbjct: 537  LVSQYDKDDVESVGLVKFDFLGLKTLTVIDWAVKNVKAMLPADEADKINIAILPLDDKPS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            Y+LLK+  T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ +F  RKH
Sbjct: 597  YDLLKRCETTAVFQLESRGMKELIKRLQPDNFEDIIALVALFRPGPLQSGMVDDFVNRKH 656

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G    +YP P  + VL  TYG++VYQEQVMQIAQ+L GYSLG+AD+LRRA+GKKK  EM 
Sbjct: 657  GRAKVDYPHPDLEPVLKPTYGVIVYQEQVMQIAQVLAGYSLGEADMLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA   G+ ++ A  IF+ +EKFA YGFNKSH+ AYAL++Y TA+LK HY + 
Sbjct: 717  KQRQIFLEGAKNRGIEENTAGPIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLKAHYPAA 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA LS  MD+T+K+  L+ D  +   L++L P++N SK  F   +E++     IRYG+
Sbjct: 777  FMAAVLSADMDNTDKVVGLI-DECRDMNLTVLLPDVNFSKIQF--TVENE---TTIRYGM 830

Query: 836  GAIKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+S +  IV+ER+ G  FT+LFDF +R++ K INRR++ SL+ +GAFD     R
Sbjct: 831  GAIKGVGESALAGIVSEREQGEAFTSLFDFCRRVELKKINRRVMESLVKAGAFDSLGGHR 890

Query: 895  YMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYV--KVPSWSKKQELIEE 950
              L +S+  A++ AE+ ++     Q  LF   + ++  +    +   VP W ++Q L  E
Sbjct: 891  ASLESSLSRAMQIAEQHRRDAASGQNDLFGLAEPSHADQPQTDLLEDVPEWQEEQLLRAE 950

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---------CTVSGIITELK-LKT 1000
            K+ LG  LS H    Y  E+ QFIP  +SEL    S            +G+I  ++ +K+
Sbjct: 951  KETLGLYLSGHPIDRYAAELAQFIPKKISELDAPESKGYQRNEIPLLTAGLIVAIRTMKS 1010

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
                ++  I +DD +  +EV +   +YE+ +++++ ++L+++ GK+ +D F   +   AE
Sbjct: 1011 KNGSRMAFITLDDQTARLEVRVFGDVYEQYQSVIQPDKLVVIQGKIGQDNFSGGLAGTAE 1070

Query: 1061 KIFDINVARILYGKKFSVMFNRTFN----ISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
             ++D+  AR L+GK   +   +       IS ++ ++  F C   +P  L Y +N+  + 
Sbjct: 1071 SVYDLQKARELFGKSVQLTVKQQGEDAQWISQMQAVMSPF-CGGVIPVELKY-LNRDAEV 1128

Query: 1117 EMKFPLNYKVQPIDDLKLALINLGLYNAI 1145
             ++   ++++ P D L   L +L +   +
Sbjct: 1129 VIRLGHDWQITPSDTLLKELADLPISETV 1157


>gi|76579902|gb|ABA49377.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1710b]
          Length = 1253

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/739 (62%), Positives = 588/739 (79%), Gaps = 2/739 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HSE+SI DG++R++D++++AA D Q ALA+TDL N FG+++FYK A + GIK
Sbjct: 516  PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 575

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVWITN  +  KPSRLLLLVK+  GYL LCELLSKA++ N   GRAE+   WLE 
Sbjct: 576  PIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLE- 634

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ALSGA  GDIG+A+  G    A   A+RW+++FP  FYIE+QR+ QP     
Sbjct: 635  GELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAY 694

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQQ + IA+ + LP+VATHP+Q++   +F AHE R CI+EG+IL+N +R K+FT EQ F+
Sbjct: 695  IQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFR 754

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            TQ +M  LF D+PSA+ NT+EIAKRCNL LE GKPKLP+FPTP  ++++D+L+  S+ GL
Sbjct: 755  TQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGL 814

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL+ LY D    + ++ +Y +RL FE  TI KM F GYFLIV+DFI WAKNN +PVGP
Sbjct: 815  DKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGP 874

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL YNLLFERFLNP R+SMPDFDIDFC  GRDRVIQYVK+
Sbjct: 875  GRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKE 934

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG DAVSQI TFGTMAAK A+RD+GRVLDL Y F D ++KLIPFKPGK +T+++A+KEE
Sbjct: 935  KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEE 994

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L ER  NE+EV QL++LA++VEG+ RNVGMHAGGVLIAP KL +FCPLY Q    G++
Sbjct: 995  PLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVV 1054

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
            SQYDKDD+E +GL+KFDFLGLTTL+ILD    +I++++    N+SL ++PL+D  ++ +L
Sbjct: 1055 SQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQIL 1114

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
            KKANTVAVFQLES+GM+ MLK+A+PD FE+IIAL+SLYRPGPMDLI +FC RKHG E  +
Sbjct: 1115 KKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVD 1174

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            YPDPR + VL ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+GKKK  EM +HR+ F
Sbjct: 1175 YPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIF 1234

Query: 722  QNGAIKYGLSKHKANEIFN 740
              GA K GL++ K++EIF+
Sbjct: 1235 AEGAAKNGLTREKSDEIFD 1253


>gi|399116951|emb|CCG19763.1| DNA polymerase III, alpha subunit [Taylorella asinigenitalis 14/45]
          Length = 1178

 Score = 1017 bits (2630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1152 (45%), Positives = 742/1152 (64%), Gaps = 39/1152 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLR H+E+S+ DG +RIND++E  A+  Q A+AI+DL+NLFG++KFYK A  KGIKP
Sbjct: 8    KFVHLRCHTEFSVFDGTIRINDLLEKVASLGQAAIAISDLANLFGLVKFYKGARKKGIKP 67

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+ CD  +       +  RL+++  NN GYL+LCE++SK +IEN     A ++ EWL   
Sbjct: 68   IVACDFMLDTATGAGEAHRLVIIATNNKGYLRLCEIISKVWIENDGQDIARLKKEWLTDT 127

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               +GLIALSGA  GDIG A+ N + + A      W   FPD FYIEIQR + P  + Q+
Sbjct: 128  ---EGLIALSGAVDGDIGQALLN-KPETAPKLLEDWVARFPDGFYIEIQR-EFPEASGQL 182

Query: 184  QQ-----------FINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRI 232
                          + +A+   +P+VATHPIQFL+  +F  H+VR CIA GEIL++ KR 
Sbjct: 183  SSRGAIKEKYTELAVQLAAKHGVPVVATHPIQFLEAEDFDDHDVRVCIARGEILNDPKRP 242

Query: 233  KKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININD 292
             +FT +Q F T  +M +LF D+PSAI NTIEIAKRCN+ L+ GKP+LP FPTP  + + +
Sbjct: 243  HRFTPQQYFYTSQQMCELFADVPSAIHNTIEIAKRCNVTLQLGKPQLPIFPTPPEVTVKE 302

Query: 293  FLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQW 352
              +  ++ GL KRL  LY D    + +   Y++RL  EI+ II M F GYFLIV DFI W
Sbjct: 303  HFVLLAQEGLAKRLQFLYPDENDRREKAPIYQERLSKEIDVIISMGFEGYFLIVQDFINW 362

Query: 353  AKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEG 412
             KNN +PVGPGRGSGA SLVAYSL IT +DPL Y+LLFERFLNP R+SMPDFD+DFC + 
Sbjct: 363  GKNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNPERVSMPDFDVDFCQDN 422

Query: 413  RDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKL 472
            R++VI YVK++YG DAVSQIVTFGT+ AK  +RDVGRVL + Y+ CD +SKLIP  P   
Sbjct: 423  REKVIDYVKEKYGLDAVSQIVTFGTLGAKAVVRDVGRVLQVPYAVCDQLSKLIPHVPADP 482

Query: 473  ITLSNAIKEEPQLA----ERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLIN 528
             TL  A+ E P++     E  K   +++ +I+ + ++EG+ RN G HAGGVLIAPSKL +
Sbjct: 483  YTLQRALDEIPEIQNMYNESEKTGSDIKMIIDHSLKIEGLTRNTGTHAGGVLIAPSKLTD 542

Query: 529  FCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL 588
            F PLYK  G +  +SQYDK DIE++GL+KFDFLGL  L+ILD  + ++K+ N    +F +
Sbjct: 543  FTPLYKLPGSSSAVSQYDKGDIEDVGLVKFDFLGLRNLTILDWAVRYVKEYNEAQKDFDI 602

Query: 589  NKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD-- 646
             +LPL+DK TY LL   NT AVFQLES GMKN+L + KP  FE+I+A+++L+RPGP+D  
Sbjct: 603  ERLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLIKLKPSTFEDIVAVLALFRPGPLDSG 662

Query: 647  LIKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
            ++ +F  RKHG    +Y     + VL  TYG++VYQEQVM I+QI+GGYSLG AD+LRRA
Sbjct: 663  MVDDFVDRKHGRASVDYFHKDLESVLKPTYGVIVYQEQVMLISQIIGGYSLGGADILRRA 722

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM   R+ F NGA++ G     A  +F+ +E FA YGFNKSH+ AYAL++Y T
Sbjct: 723  MGKKKHDEMARQREIFVNGALERGYKAELATRLFDLMEMFASYGFNKSHSVAYALIAYQT 782

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
            A+LKT++ + FMAA ++  M+DT+K++I  +D +   GL +L PNIN S Y F P+ + +
Sbjct: 783  AWLKTYHPAEFMAATMTSDMNDTDKVEIFWEDCLLN-GLKLLAPNINTSNYRFEPVRDEE 841

Query: 826  GKH----KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINS 880
                   K I YGLGAIKG G++ +E IV  R + G F +  D  +R+D+  ++RR I +
Sbjct: 842  SAKGLPPKTIGYGLGAIKGVGQNVVEEIVRAREEGGAFKDFADLIRRVDRNIVSRRAIEA 901

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS 940
            LI +GA D  +  R +L+A ID   + A + ++  NQ  LF + D+  + E      +  
Sbjct: 902  LIKAGAMDVLHTNRALLIAMIDNCFQAANQEEENKNQGDLFGDSDDAAI-EVPEPKGIKE 960

Query: 941  WSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELK-- 997
            W+  + L  EK+ +GF  S  +F I+++E+R+FI   +  L+ T    T++G++T+++  
Sbjct: 961  WTLAEVLEAEKESIGFYFSSDLFGIWKSEVRKFIKTPIKNLENTQGQVTIAGVLTDIRST 1020

Query: 998  -LKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
              K + RG  ++  + IDD S S+E++    +YE  K+ +K++ LL++      + F+  
Sbjct: 1021 ISKKSDRGDNRLFFLTIDDGSGSIEILCPPHIYENFKSRIKKDSLLVIQANAKFNSFVNR 1080

Query: 1055 IRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC--KNGLPFVLYYCI-N 1111
            +R  AE IFD   AR  + ++  +     F     KKIL  F+   +N LP V  + I  
Sbjct: 1081 MRYTAEAIFDYQTARENWARQIEIEVKNGFAFDEFKKILAPFRGAPENNLPGVSVHVIYT 1140

Query: 1112 KSIKYEMKFPLN 1123
            +  +Y   F L 
Sbjct: 1141 QENEYSCAFKLG 1152


>gi|348590279|ref|YP_004874741.1| DNA polymerase III subunit alpha [Taylorella asinigenitalis MCE3]
 gi|347974183|gb|AEP36718.1| DNA polymerase III alpha subunit [Taylorella asinigenitalis MCE3]
          Length = 1178

 Score = 1014 bits (2622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/1151 (45%), Positives = 741/1151 (64%), Gaps = 37/1151 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLR H+E+S+ DG +RIND++E  A+  Q A+AI+DL+NLFG +KFYK A  KGIKP
Sbjct: 8    KFVHLRCHTEFSVFDGTIRINDLLEKVASLGQAAIAISDLANLFGFVKFYKGARKKGIKP 67

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+ CD  +       +  RL+++  NN GYL+LCE++SK +IEN     A ++ EWL   
Sbjct: 68   IVACDFMLDTATGAGEAHRLVIIATNNKGYLRLCEIISKVWIENDGQDIARLKKEWLTDT 127

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQR-FKQPNMNFQ 182
               +GLIALSGA  GDIG A+ N + + A      W   FPD FYIEIQR F + +    
Sbjct: 128  ---EGLIALSGAVDGDIGQALLN-KPETAPKLLEDWVSRFPDGFYIEIQREFPEASGRLS 183

Query: 183  IQQFI---------NIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIK 233
             +  I          +A+   +P+VATHPIQFL+  +F  H+VR CIA GEIL++ KR  
Sbjct: 184  SRGAIKEKYTELALQLAAKHGVPVVATHPIQFLEAEDFDDHDVRVCIARGEILNDPKRPH 243

Query: 234  KFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDF 293
            +FT +Q F T  +M +LF D+PSAI NTIEIAKRCN+ L+ GKP+LP FPTP  + + + 
Sbjct: 244  RFTPQQYFYTSQQMCELFADVPSAIHNTIEIAKRCNVTLQLGKPQLPIFPTPPEVTVKEH 303

Query: 294  LISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWA 353
             +  ++ GL KRL  LY D    + +   Y++RL  EI+ II M F GYFLIV DFI W 
Sbjct: 304  FVLLAQEGLAKRLQFLYPDENDRREKAPIYQERLSKEIDVIISMGFEGYFLIVQDFINWG 363

Query: 354  KNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGR 413
            KNN +PVGPGRGSGA SLVAYSL IT +DPL Y+LLFERFLNP R+SMPDFD+DFC + R
Sbjct: 364  KNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNPERVSMPDFDVDFCQDNR 423

Query: 414  DRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLI 473
            ++VI YVK++YG DAVSQIVTFGT+ AK  +RDVGRVL + Y+ CD +SKLIP  P    
Sbjct: 424  EKVIDYVKEKYGLDAVSQIVTFGTLGAKAVVRDVGRVLQVPYAVCDQLSKLIPHVPADPY 483

Query: 474  TLSNAIKEEPQLAERIKNEE----EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
            TL  A+ E P++     + E    +++ +I+ + ++EG+ RN G HAGGVLIAPSKL +F
Sbjct: 484  TLQRALDEIPEIQNMYNDSEKTGSDIKMIIDHSLKIEGLTRNTGTHAGGVLIAPSKLTDF 543

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN 589
             PLYK  G +  +SQYDK DIE++GL+KFDFLGL  L+ILD  + ++K+ N    +F + 
Sbjct: 544  TPLYKLPGSSSAVSQYDKGDIEDVGLVKFDFLGLRNLTILDWAVRYVKEYNEAQKDFDIE 603

Query: 590  KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--L 647
            +LPL+DK TY LL   NT AVFQLES GMKN+L + KP  FE+I+A+++L+RPGP+D  +
Sbjct: 604  RLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLMKLKPSTFEDIVAVLALFRPGPLDSGM 663

Query: 648  IKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            + +F  RKHG    +Y     + VL  TYG++VYQEQVM I+QI+GGYSLG AD+LRRA+
Sbjct: 664  VDDFVDRKHGRATVDYFHKDLESVLKPTYGVIVYQEQVMLISQIIGGYSLGGADILRRAM 723

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   R+ F NGA++ G     A  +F+ +E FA YGFNKSH+ AYAL++Y TA
Sbjct: 724  GKKKHDEMARQREIFVNGALERGYKAELATRLFDLMEMFASYGFNKSHSVAYALIAYQTA 783

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKT++ + FMAA ++  M+DT+K++I  +D +   GL +L PNIN S Y F P+ + + 
Sbjct: 784  WLKTYHPAEFMAATMTSDMNDTDKVEIFWEDCLLN-GLKLLAPNINTSNYRFEPVRDEES 842

Query: 827  KH----KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSL 881
                  K I YGLGAIKG G++ +E IV  R + G F +  D  +R+D+  ++RR I +L
Sbjct: 843  AKGLPPKTIGYGLGAIKGVGQNVVEEIVRAREEGGAFKDFADLIRRVDRNIVSRRAIEAL 902

Query: 882  INSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSW 941
            I +GA D  +  R +L+A ID   + A + ++  NQ +LF + D+  + E      +  W
Sbjct: 903  IKAGAMDVLHANRALLIAMIDNCFQAANQEEENKNQGNLFGDSDDAAI-EVPEPKGIKEW 961

Query: 942  SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELK--- 997
            +  + L  EK+ +GF  S  +F I+++E+R+FI   +  L+ T    T++G++T+++   
Sbjct: 962  TLAEVLEAEKESIGFYFSSDLFGIWKSEVRKFIKTPIKNLENTQGQVTIAGVLTDIRSTI 1021

Query: 998  LKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
             K + RG  ++  + IDD S S+E++    +YE  K+ +K++ LL++      + F+  +
Sbjct: 1022 SKKSDRGDNRLFFLTIDDGSGSIEILCPPHIYENFKSRIKKDSLLVIQANAKFNSFVNRM 1081

Query: 1056 RINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC--KNGLPFVLYYCI-NK 1112
            R  AE IFD   AR  + ++  +     F     KKIL  F+   +N LP V  + I  +
Sbjct: 1082 RYTAEAIFDYQTARENWARQIEIEVKNGFAFDEFKKILAPFRGAPENNLPGVSVHVIYTQ 1141

Query: 1113 SIKYEMKFPLN 1123
              +Y   F L 
Sbjct: 1142 EKEYSCAFKLG 1152


>gi|387129271|ref|YP_006292161.1| DNA polymerase III subunit alpha [Methylophaga sp. JAM7]
 gi|386270560|gb|AFJ01474.1| DNA polymerase III alpha subunit [Methylophaga sp. JAM7]
          Length = 1158

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1161 (44%), Positives = 747/1161 (64%), Gaps = 34/1161 (2%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            + +F+HL LH++YS+IDGL+R+  ++ A A    PA+AITD  NLF  +K Y +A   GI
Sbjct: 1    MSEFVHLHLHTDYSLIDGLVRVKPLVSATAAAGMPAVAITDQHNLFAAVKLYSAALQAGI 60

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            KPI+G D+ + +  ++KK  R +LL  N  GY  L  LLS+AYIE    G   +++ WL+
Sbjct: 61   KPILGADLRLADPSDSKKSLRFVLLCMNMTGYHNLSRLLSQAYIEGQQLGVPMLQMSWLD 120

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
                 DGLI LSG   G +G A+ + R     + A  W+ +FP+ FY+E+ R  + +   
Sbjct: 121  GQT--DGLICLSGGRDGLLGRAILSQREADVVSQAEIWTSLFPERFYLELTRTGRDDEER 178

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
              Q  + +A +++LP+VA++ ++FL   +F AHE + CI EG +L + +R + ++ +Q  
Sbjct: 179  FNQGALALARHLDLPVVASNDVRFLTPDQFEAHEAKVCIHEGRLLDDPRRPRLYSDQQYL 238

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            ++  EM  LF DIP A+ NT+EIAKRC+++L  G+  LP FP P+ + I  F   +S  G
Sbjct: 239  RSPEEMATLFSDIPEALTNTVEIAKRCSVELTLGEHYLPDFPVPEGLTIEQFFSEESYRG 298

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L +RL  L+ D    +    RY +RLQ E++ I +M F GYFLIV+DFIQWAKNN +PVG
Sbjct: 299  LDRRLAVLFPDENARQAAYSRYAERLQTELDVINEMGFPGYFLIVADFIQWAKNNGVPVG 358

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DPL+Y+LLFERFLNP R+S+PDFD+DFC +GRDRVI+YV 
Sbjct: 359  PGRGSGAGSLVAYALDITDLDPLAYDLLFERFLNPERVSLPDFDVDFCMDGRDRVIEYVS 418

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
             RYG+D VSQI+T+GTMAAK  +RDVGRVL   Y F D ++KL+PF+    +TL+ A+ +
Sbjct: 419  QRYGRDHVSQIITYGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFE--LKMTLTKALAQ 476

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EPQL  R   EEEVR LI+LA Q+EG+ RNVG HAGGV+IAP  L ++ PLY +    G+
Sbjct: 477  EPQLKARYDQEEEVRTLIDLALQLEGLTRNVGKHAGGVVIAPKTLTDYTPLYCEHNGAGL 536

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKK-INTKTTNFSLNKLPLNDKDTYN 600
            +SQYDKDD+E +GL+KFDFLGL TL+++D  +   KK +  +     + +LPL+DK TY 
Sbjct: 537  VSQYDKDDVESVGLVKFDFLGLKTLTVIDWAVENAKKLLPAEQDTIDIARLPLDDKATYA 596

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LLK+  T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 597  LLKRCETTAVFQLESRGMKELVKRLQPDNFEDIIALVALFRPGPLQSGMVDDFVNRKHGR 656

Query: 659  Y-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
               +YP P  + VL  TYG++VYQEQVMQIAQ+L GYSLG AD+LRRA+GKKK  EM + 
Sbjct: 657  AKVDYPHPDLEPVLKPTYGVIVYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPEEMAKQ 716

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            R+ F  GA +  + K +A  IF+ +EKFA YGFNKSH+ AYAL++Y TA+LK HY S FM
Sbjct: 717  RQIFLAGAEQRDIGKEQAEPIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLKAHYPSAFM 776

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
            AA LS  MD+T+K+  L+ D  +  GL++LPP++N S+  F   +E     + IRYGLGA
Sbjct: 777  AAVLSADMDNTDKVVGLI-DECRDMGLNVLPPDVNFSQIQF--TVEDT---QTIRYGLGA 830

Query: 838  IKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            IKG G+S +  IV ER  G  F +LFDF +R++ K INRR++ SL+ +GAFD     R  
Sbjct: 831  IKGVGESALAGIVAERAQGKAFESLFDFCRRVELKKINRRVMESLVKAGAFDSLGGDRAS 890

Query: 897  LVASIDVALKNAEKTKK----FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
            L AS+  AL+ AE+ ++      N L      ++++  +      VP+WS++  L  EK+
Sbjct: 891  LEASLTRALQIAEQHRRDQDSGQNDLFGLSAAESHHGTQTETLDTVPAWSEEHLLQAEKE 950

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---------CTVSGIITELK-LKTTY 1002
             LG  LS H    ++ E+  FIP  +++L    S            +G+I  ++ +K+  
Sbjct: 951  TLGLYLSGHPINRFKNELALFIPKQIADLDAPESKGYQRNEKPVLTAGLIVAIRTMKSKS 1010

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
              ++  I +DD +  +EV +   +YE+ + +++ ++L+++ GK+ +D F   +   AE +
Sbjct: 1011 GSRMAFITLDDQTARLEVRVFADVYEQYQQVIQPDKLVVIKGKIGQDNFTGGLAATAEAV 1070

Query: 1063 FDINVARILYGKKFSVMFNRTFN---ISILKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
            +D+  AR LYGK   +  +   +   IS L+ ++  F     +P  L Y  N+  +  ++
Sbjct: 1071 YDMQKARELYGKALQLHISPPADPQWISQLQGLIAPF-AGGVMPLELQYR-NQEAEVMLR 1128

Query: 1120 FPLNYKVQPIDDLKLALINLG 1140
               ++++ P D L  +L +L 
Sbjct: 1129 LGDDWQITPTDTLLKSLGDLA 1149


>gi|388456823|ref|ZP_10139118.1| DNA polymerase III, alpha chain [Fluoribacter dumoffii Tex-KL]
          Length = 1146

 Score = 1006 bits (2601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1151 (44%), Positives = 752/1151 (65%), Gaps = 27/1151 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+HSE+S++DGL+R+  +++   +    A+A+TD  NLF  +K YK+A + G
Sbjct: 1    MQQRFVHLRVHSEFSLVDGLVRVKPLMKVLPSRGMCAVAVTDYCNLFAAVKHYKTAVDAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +  + ++   ++LL  N+ GY  L  L+SKAY E  + G+  I+  W+
Sbjct: 61   IKPIIGSDLPCHDPEQPERVFSMVLLCLNSEGYKNLTCLISKAYQEGQHLGQPRIQNHWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
              ++Y  GLIALSG  LGDIG A+    +D+A++ A  W K+FP  FY+EIQR  +P+  
Sbjct: 121  --HEYSAGLIALSGGRLGDIGQALLANDDDLAKSRALYWQKLFPSRFYLEIQRTGRPDET 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ I +A  + LP+VAT+ ++FL K +F AHE R CI EG  L++ +R +K++ +Q 
Sbjct: 179  RYNEKLIALADELQLPLVATNDVRFLDKEDFEAHEARVCIHEGYTLADPRRSQKYSAQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM+ LF D+PSA++NT+EI+KRC +KL+ G   LP FP P    + ++L   S+ 
Sbjct: 239  LRSADEMVALFADLPSAVENTVEISKRCTVKLDLGNNYLPNFPIPAGSTVENYLSHLSQV 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL+ ++K PE  +  +  Y KRLQ E++ I  M F+GYFLIV+DFIQWAK N +PV
Sbjct: 299  GLEERLVQIFKSPEEIQASRDEYDKRLQVELDVINNMGFAGYFLIVADFIQWAKKNGVPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI YV
Sbjct: 359  GPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIDYV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITL+ A++
Sbjct: 419  AEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFEIG--ITLNKALE 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +E +L  R   EEEV++LI+LA ++EGI RN G HAGGV+IAPS+L +F  +Y +EG T 
Sbjct: 477  QEEELKRRYTEEEEVKELIDLALKLEGITRNAGKHAGGVVIAPSQLTDFTAIYCEEGSTQ 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDT 598
            I+SQ+DKDD+E  GL+KFDFLGL TL+I+D  +  +  K+         ++++P +D  T
Sbjct: 537  IVSQFDKDDVEAAGLVKFDFLGLRTLTIIDWALATVNKKRALEGLPPIDISQIPTDDAAT 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  RKH
Sbjct: 597  FDLLKACKTTAVFQLESRGMKELINRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDRKH 656

Query: 657  GE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  EM 
Sbjct: 657  GRAAVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA   G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY + 
Sbjct: 717  KQREIFTQGATARGVDEKVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYPAA 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  MD+T+K+   + D      L ILPP+IN S Y F   +  D     I YGL
Sbjct: 777  FMAAVMSSDMDNTDKVVTFI-DECAHMKLKILPPSINQSMYPF--TVTDD---TTIIYGL 830

Query: 836  GAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+S I+ I   R  G  FT+LF F +R+D + +NRR++ +LI SGAFD +  +R
Sbjct: 831  GAIKGVGESAIDCITDARDAGGKFTDLFSFCQRLDLRKVNRRVLEALIKSGAFDDWKVER 890

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFK-NDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
             +L AS++ ALK AEK    +   Q  LF   +D N+++   +YV    WS+ Q L  E+
Sbjct: 891  AILTASLEKALKIAEKEHQNQSSGQFDLFSLLEDENHVQ---DYVSCKPWSESQRLEGER 947

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILII 1009
            +VLGF L+ H    Y  E   FI + +S+L P+      +   I  ++   T RGK L+I
Sbjct: 948  EVLGFYLTGHPADQYRREFGDFI-VSISQLNPSQHKKALICAQIVGIRKIVTKRGKKLVI 1006

Query: 1010 V-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            + +DD++  ++V++  +L+E +   L   ++L++ G+V  D +   +++ A +++D+  A
Sbjct: 1007 LGMDDSTARLDVVVFGELFESSGAALSTGDMLVIEGEVAHDDYNGGVKMTASQLYDVPTA 1066

Query: 1069 RILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            R  + +   +  + + N  IL  I    K   G   V +   N+  + ++     ++V P
Sbjct: 1067 RTKFARCLELRLH-SGNQEILSSIQSLLKSYTGRCSVQFSYSNEYARAQLSLAPQWQVMP 1125

Query: 1129 IDDLKLALINL 1139
             D+L   L NL
Sbjct: 1126 SDELLGHLANL 1136


>gi|381401913|ref|ZP_09926802.1| DNA polymerase III, alpha subunit [Kingella kingae PYKK081]
 gi|380833039|gb|EIC12918.1| DNA polymerase III, alpha subunit [Kingella kingae PYKK081]
          Length = 1149

 Score = 1004 bits (2595), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1129 (46%), Positives = 734/1129 (65%), Gaps = 39/1129 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+ LR HSE+SI DG++R++++   AA    PALA+TDL N FG+IKFYK+   KGIKPI
Sbjct: 6    FVPLRAHSEFSITDGIIRVSELASHAAKLGYPALALTDLMNTFGLIKFYKACRKKGIKPI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG D+ + N  +      +LLL KN+ GY++L ELL+ AY  +         +E    N 
Sbjct: 66   IGADIRVENPNQADDFYSVLLLAKNHQGYVRLAELLTAAYEGDGRDLHCPKVLECDLANG 125

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFA---------RRWSKIFPDNFYIEIQRF- 174
               GLI LSGA  G++G      R+ + +N A           W   FP+ FY+E+QR  
Sbjct: 126  DNSGLICLSGAQQGEVG------RHLLLDNVADARAAAQKYAAW---FPNAFYLELQRLN 176

Query: 175  KQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKK 234
            ++P     +   +++A+ ++LP+VATHPIQFL++ +F AH+VR CIA G +L++ KR + 
Sbjct: 177  EKPEWEQCVAGSLHLAAELDLPVVATHPIQFLQREDFKAHDVRVCIAGGWVLADKKRPQN 236

Query: 235  FTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFL 294
            F   Q F +  EM++ F DIP A+ N++EIAKRCN+ L  GKP LP FPTP  +++ND+L
Sbjct: 237  FVDSQYFVSPQEMVERFADIPEALANSLEIAKRCNVTLTLGKPVLPNFPTPNGMDLNDYL 296

Query: 295  ISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
            +  S  GL++R+  LY + +    +   Y+ RL FE++TII+M F GYFLIV DFI WAK
Sbjct: 297  VHLSNEGLRERMAVLYPNEDERTQKMPEYQARLDFELQTIIQMGFPGYFLIVQDFINWAK 356

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
            NN  PVGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   R 
Sbjct: 357  NNGCPVGPGRGSGAGSLVAYSLRITDLDPLKYALLFERFLNPERVSMPDFDIDFCQANRG 416

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            RVI+YV+++YGK+AVSQIVTFGT+++K  IRDVGRVL L +  CD +SKL+P    K + 
Sbjct: 417  RVIEYVREKYGKEAVSQIVTFGTLSSKAVIRDVGRVLQLPFGLCDRLSKLVPVVQNKPLG 476

Query: 475  LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
            L  A++EEP++ + I+ EE    L    K +E + RN+GMHAGGVLIA  K+ +FC +Y+
Sbjct: 477  LQAALEEEPEIGKIIQEEEAEELLELAMK-LEDLTRNLGMHAGGVLIALGKISDFCGVYQ 535

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN 594
             +  +  +S YDK D+E+IGL+KFDFLGL  L+I++    FIK+      +  +N +PL+
Sbjct: 536  ADESSSPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQNFIKQTTGNVVD--VNHIPLD 593

Query: 595  DKDTYNLLKK-ANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
            D+  Y + +   NT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPM+ I +F  
Sbjct: 594  DQKAYQIFRSLPNTTAVFQFESSGMKQMLKTAHTTKFEELIAFVSLYRPGPMENIPDFVA 653

Query: 654  RKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            R  G  F Y  P  + VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  E
Sbjct: 654  RMKGADFEYLHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPEE 713

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M +HR+ F  GA + G+S+ KA+EIF+ +EKFAGYGFNKSHA AYA +SY TA+LK HY 
Sbjct: 714  MAKHREIFAKGAAEQGISQEKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKAHYP 773

Query: 774  SFFMAANLSLSMDDTNKIKILVKDA-IKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
            + FMAA +S  +D+T+++K+   DA  K  G+S LPP+IN S Y F P      K+K+IR
Sbjct: 774  AEFMAATMSSELDNTDQLKVFYDDARSKLNGISFLPPDINESFYRFIP-----NKNKQIR 828

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            Y LGAIKGTG++ I AIV ER + G F +LFDF +R+ K++INRR I +LI  GAFD   
Sbjct: 829  YALGAIKGTGEAAINAIVAERERGGKFVSLFDFCERMGKQHINRRTIEALIRGGAFDSIE 888

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
              R ML+ ++++AL+NAE+      Q  LF  D  ++  + +     P+W   Q+L EEK
Sbjct: 889  PNRAMLLENVELALQNAEQKSSNATQGGLF--DMLDDALDEIQMQPAPAWDLAQQLTEEK 946

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY-SCTVSGIITELKLKTTYRGKILIIV 1010
              +GF LS H F  +E E+R+FIP  L+ L+    S  ++G +T ++   T +GK++ IV
Sbjct: 947  TAIGFYLSGHPFKPHEAEVRRFIPTKLAHLRAQNDSQRIAGFVTSVRTINTKKGKMVAIV 1006

Query: 1011 IDDNSNSVEVIINNQLYEKN-KNILKENELLIVSGKVLEDRFLKN---IRINAEKIFDIN 1066
            ++DNS + EV++  +  E   + +L+ +++LI   +V EDR  K+   +RIN   ++ +N
Sbjct: 1007 LEDNSATHEVLLMGETLENTPRELLQADQILICDCRVREDRGEKSDGGLRINVNAVYTLN 1066

Query: 1067 VARILYGKKFSVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKS 1113
             AR+ Y     +      +I  L  +L  +       +P  +YY  +K+
Sbjct: 1067 QARLHYAGCLKLHLRPEHDIDALVALLQPYTQSENKRIPVQIYYQNDKA 1115


>gi|325267457|ref|ZP_08134113.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans
            ATCC 33394]
 gi|324981098|gb|EGC16754.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans
            ATCC 33394]
          Length = 1153

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1099 (46%), Positives = 721/1099 (65%), Gaps = 20/1099 (1%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            IP +I LR HSE+SI DG++R+ ++ + AA    PA+A+TDL N FG++KFYK+    G+
Sbjct: 13   IP-YIPLRAHSEFSITDGIIRVGELAKTAAEYGYPAVALTDLMNTFGLLKFYKACRKAGV 71

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENI-NYGRAEIRIEWL 120
            KPI+G +V I N  +  +P R LLL++N++GY++L ELL+ A+ +   +    +++ EWL
Sbjct: 72   KPILGAEVRIANPKQPAQPFRALLLIRNHSGYVRLGELLTLAHTDEYRDLIAPQLQEEWL 131

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNM 179
             +     GLI LSGA  G+IG A+  G  + A   A++++  F   FY+E+QR   +P  
Sbjct: 132  AEGD-NSGLICLSGAQWGEIGQALLAGHEEQALQAAQKYAAWFEQAFYLEVQRLPDKPEW 190

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A  ++LP+VATH  QFL++ +F AH+ R CIA G +L++ KR   F+  Q
Sbjct: 191  ETVVAGSVRLAEQLDLPVVATHATQFLQREDFTAHDARVCIAGGWVLADDKRPHDFSDSQ 250

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F    EM + F D+P+A+ N++EIAKRCN++LE GK  LP FPTP+ + +ND+L   + 
Sbjct: 251  YFAHPEEMAERFADLPAALANSLEIAKRCNVELELGKNFLPDFPTPEGMPLNDYLCVLAN 310

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++R+  LY D      +   Y+ RL FE++TII+M F GYFLIV DFI WAK N  P
Sbjct: 311  QGLRERMEVLYPDEAERNAKMPEYQARLDFELQTIIQMGFPGYFLIVQDFINWAKQNGCP 370

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   R RVI+Y
Sbjct: 371  VGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQANRGRVIEY 430

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V+++YGK+AVSQIVTFGT+++K  IRDVGRVL L +  CD +SKL+P +  K + L  A+
Sbjct: 431  VREKYGKEAVSQIVTFGTLSSKAVIRDVGRVLQLPFGLCDRLSKLVPVEANKPLGLQAAL 490

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP++   I+ EE    L    K +E + RN+GMHAGGVLIAP ++ +FC +Y+ +  +
Sbjct: 491  EAEPEIRTLIEAEEAEELLTLALK-LEDLTRNLGMHAGGVLIAPGRIADFCGVYQADEHS 549

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              +S YDK D+EEIGL+KFDFLGL  L+I++    FI++  T+  +  +N++ L+D+  Y
Sbjct: 550  SPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQQFIRQ--TRGEDIDVNRIALDDQAAY 607

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
             + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPM+ I +F  R  G  
Sbjct: 608  QIFRDANTTAVFQFESSGMKQMLKTAHTTKFEELIAFVSLYRPGPMENIPDFVARMKGAK 667

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F Y  P  + VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM++HR+
Sbjct: 668  FEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPEEMVKHRE 727

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K  + + KA+EIF+ +EKFAGYGFNKSHA AYA +SY TA+LK HY + FMAA
Sbjct: 728  IFAEGAAKQNIDRAKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKAHYPAEFMAA 787

Query: 780  NLSLSMDDTNKIKILVKDAIKTC-GLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAI 838
             +S  +D+T+++K+   DA +   G+  LPP+IN S Y F P       + +IRY LGAI
Sbjct: 788  TMSSELDNTDQLKVFFDDAQRPVNGIRFLPPDINQSFYRFIP-----NANNEIRYALGAI 842

Query: 839  KGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYML 897
            KGTG++ +  IV ER+  G FT L DF +R+  K+INRR + +LI  GAFD     R ML
Sbjct: 843  KGTGEAVVNQIVAEREANGAFTGLLDFCERM-GKHINRRSVEALIRGGAFDALEPNRAML 901

Query: 898  VASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFC 957
            +A++D+AL+NAE+  +  NQ  LF  D  +++ + +     P+WS+  +L EEK  +GF 
Sbjct: 902  LANVDLALQNAEQKHQSANQGGLF--DMFDDVIDDIQMQPAPAWSEAVQLAEEKTAIGFY 959

Query: 958  LSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNSN 1016
            LS H F  Y  E+R+  P+ L++L        V+G  T ++   T RGK+L I+++D+  
Sbjct: 960  LSGHPFSPYREEVRRVAPVSLAKLSEQDGTQRVAGFATSIRSIMTKRGKMLAIMLEDDEA 1019

Query: 1017 SVEVIINNQ-LYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKK 1075
              EV++    L E  + +L+ +++LI   +V  +     +R+NA  +  +N AR+ Y   
Sbjct: 1020 KQEVLVQGDILAELPREVLQADQILICDCRVYRNES-GELRLNANTVRTLNQARVAYADC 1078

Query: 1076 FSVMFNRTFNISILKKILL 1094
             ++      +I  L ++LL
Sbjct: 1079 LTLTLQPAHDIDALAQLLL 1097


>gi|319942633|ref|ZP_08016941.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B]
 gi|319803812|gb|EFW00744.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B]
          Length = 1153

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1070 (47%), Positives = 707/1070 (66%), Gaps = 17/1070 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR HSEYSI DG++RI+ +I A       A+ I+DL N+FG ++FY  A   G+K
Sbjct: 22   PRFVHLRFHSEYSITDGIVRIDPMIHAVLEGGGAAVGISDLMNVFGGLRFYTHALAAGLK 81

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCD+ + N  +  KP RL +L  N+ GY  L  LL+KA++ N +  R  +  +W + 
Sbjct: 82   PILGCDLKVINPKDLNKPFRLGVLCMNHEGYHSLSVLLTKAFLTNNDAARGLVDPKWFDD 141

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLIALSGA  G++G  +   +  +A   A R+   FP  FY+E+QR  +P     
Sbjct: 142  GG-SEGLIALSGAAQGELGSLLLGKKWALAHEAAERFKAQFPGRFYVELQRAGRPTDELA 200

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
              +  N A    LP+VATHPIQFLK  +F AHEVR  IAEG  L + +R+K++T EQ  K
Sbjct: 201  TARLANFAVEEKLPVVATHPIQFLKPEDFEAHEVRCSIAEGYTLQDPRRVKRYTPEQYLK 260

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP+AI+NT+EIAKRCNL     KP+LP FPTP  ++++D++   SK GL
Sbjct: 261  SEAEMCELFADIPAAIENTVEIAKRCNLDGVLSKPQLPLFPTPDGMSLDDYIDQLSKEGL 320

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRL  LY DP++ +  +  Y KRL++E+  I  M F GYFLIV DFI W+K + +PVGP
Sbjct: 321  QKRLEFLYPDPKVLEERRPPYDKRLEYELGIIKGMKFPGYFLIVQDFINWSKTHGVPVGP 380

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC   RDR I YVK 
Sbjct: 381  GRGSGAGSLVAYSLGITDLDPLHFDLLFERFLNPERVSMPDFDVDFCQYNRDRTIDYVKR 440

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG DAVSQI TFGT+ AK  +RDVGR LD+ Y   D+++KLIP +PG+ I+L +AI E 
Sbjct: 441  TYGVDAVSQIATFGTLGAKAVVRDVGRALDVPYMKTDALAKLIPMQPGRNISLDDAIAEV 500

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT-GI 541
            P+  E I+ ++E +++I LAK +EG+ RN+GMHAGGVLIAP KL +FCPLY  +G     
Sbjct: 501  PEFKEAIERDDEYKEIIRLAKPLEGLTRNLGMHAGGVLIAPGKLTDFCPLYNSDGRPENT 560

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            ISQ+DK D+E +GL+KFDFLGLTTLSIL K +  I K+  +  +F L ++P++D  TY L
Sbjct: 561  ISQFDKKDVENVGLVKFDFLGLTTLSILAKAVEIIDKLYPE-QHFELERIPVDDAATYEL 619

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
             ++ANT AVFQ ES GM+ +LK+A+PD  E+++AL +LYRPGPMDLI ++  RK G E  
Sbjct: 620  FQQANTAAVFQFESDGMRGLLKQARPDRLEDLVALNALYRPGPMDLIPSYIDRKFGREKV 679

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y D R + VL ETYGIMVYQEQVM++AQ++GGYSLG ADLLRRA+GKK   EM   R  
Sbjct: 680  EYLDDRMEPVLKETYGIMVYQEQVMRVAQVVGGYSLGGADLLRRAMGKKNVEEMKRQRAV 739

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA + G+ +  A EIF+ +EKFAGYGFNKSHA AY+ ++Y TAYLK H+++ F AAN
Sbjct: 740  FIKGAGERGVKESVATEIFDLMEKFAGYGFNKSHAAAYSYVAYQTAYLKVHHTAAFFAAN 799

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            L + MDD +K+K L+ DA +  G+    P++N+S+++F    E+      I+ GLGAIKG
Sbjct: 800  LCMVMDDGDKMKALIDDA-RANGVDFRLPDVNVSEWFFSVPTEN-----VIQLGLGAIKG 853

Query: 841  TGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
              ++ +EAIV+ER+  G F ++FDF  R++   +N RI  S++ +GAFD  +  R  L +
Sbjct: 854  INRALVEAIVSEREANGPFEDIFDFAARVEG--VNFRIFESMVRAGAFDSTDADRGKLFS 911

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +I  AL+     ++   Q SLF  ++    K+ +N+V+   WS ++ L EE    GF LS
Sbjct: 912  NISNALQGGAAVRQSAGQDSLFGGEET---KKIVNWVEGEQWSFRRNLEEEMTAFGFSLS 968

Query: 960  EHIFCIYETEIRQFIPIYLSELKPT-YSCTVSGIITELKLKTTYRGKILIIVIDDNSNSV 1018
             H F  Y+ ++R    + L EL+ +  +  V G+I+ ++     RG + ++ IDD ++S+
Sbjct: 969  GHFFDEYKDDLRAIGCMPLDELQVSKENVCVGGVISSIRQINGKRGVMGVVGIDDGTHSI 1028

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            E    + L+   K  +     + V G+   D F K + I  E+I   + A
Sbjct: 1029 EFFAFSDLWATLKTWIAPKMAVWVKGRPKYDDFSKKVTIYPEEIMSADDA 1078


>gi|399912520|ref|ZP_10780834.1| DNA polymerase III subunit alpha [Halomonas sp. KM-1]
          Length = 1167

 Score =  995 bits (2573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1164 (43%), Positives = 737/1164 (63%), Gaps = 39/1164 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+H+EYS++DGL+R+  +I+A A    PA+A+TD +NLFG++KFY+ A   G
Sbjct: 1    MTTPFVHLRVHTEYSLVDGLVRLKPLIKATAERGMPAMAVTDEANLFGLVKFYRGAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+W+ N  +   P RL LL  N+ GY  L EL+S+ ++E    GRA +   W+
Sbjct: 61   LKPIIGADLWLANPHDETHPYRLTLLAMNDTGYRNLTELISRGWMEGQRQGRAVLEKAWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                  +GLIALSG   G+IG  +     D A      W   FP+ FY+E+ R  +P   
Sbjct: 121  LAQ--SEGLIALSGGREGEIGRHLLADHRDEARTLLEEWQAAFPERFYLELTRTGRPLEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FL++ +F AHE R  I EG+ L + +R +K+T+EQ 
Sbjct: 179  ECVHLSVELAVTTGTPVVATNDVRFLERDDFWAHETRVSIGEGKALDDPRRERKYTEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF DIP A++N++ IA RCN+ +  G+  LP+F  P+ +  ++F    S  
Sbjct: 239  LKSPAEMAELFADIPEALENSVMIAARCNVDVRLGEIFLPEFEIPEGMTQDEFFRKVSHD 298

Query: 301  GLKKRLLNLY------KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
            GL +RL  LY      +D   Y     RY++RL FE++ II+M F GYFLIV DFI+WAK
Sbjct: 299  GLDERLDFLYPVEKYPRDGAEYAEIDKRYRERLDFELDIIIQMGFPGYFLIVMDFIKWAK 358

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
            +N +PVGPGRGSGA SLVAY+  ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC E RD
Sbjct: 359  DNDVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRD 418

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            RVI YV DRYG++AVSQIVTFGTMAAK  +RDV R     YS  D +SKLIPF+ G  +T
Sbjct: 419  RVIDYVADRYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVG--MT 476

Query: 475  LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
            L+ AI+ EP L E I+N+EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F PL  
Sbjct: 477  LAKAIEAEPALKEFIENDEEAAEIWEMAVKLEGITRGTGKHAGGVVIAPTKLTDFSPLLC 536

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINT--KTTNFSLNKLP 592
             E   G++ Q+DK+DIEE GL+KFDFLGL TL+I+D  +  + K+          ++ +P
Sbjct: 537  DEEGNGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRAVKGEGPLDIDSIP 596

Query: 593  LNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
            L+D  T+ +LK+A T AVFQLES+GMK ++K   PD  E++IAL++L+RPGP+   ++ +
Sbjct: 597  LDDSPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPGPLQSGMVDD 656

Query: 651  FCRRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            F  RKHG     YP P       K VL  TYGI++YQEQVMQIAQ+L GY+LGQAD+LRR
Sbjct: 657  FINRKHGRAELAYPHPDYQHEWLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGQADMLRR 716

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM + R  F  G    G+ K  A  IF+ +EKFAGYGFNKSH+ AY L+SY 
Sbjct: 717  AMGKKKPEEMAKQRSGFMEGCAANGIDKELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQ 776

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TA+LKTHY   FMAA +S  MD+ +K+  L++++ +  GL++ PP++N+  Y F   +++
Sbjct: 777  TAWLKTHYPGPFMAAVMSTEMDNLDKVVPLIEES-RRIGLTVTPPDVNIGGYKF--TVDT 833

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLIN 883
            +G   ++ YGLGAI+G G+  I AIV  R+  G F++LFDF +R+D K +N+R + +LI 
Sbjct: 834  EG---RVVYGLGAIRGVGEGPIGAIVEAREADGPFSDLFDFCRRVDPKRMNKRTLEALIR 890

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEKTK--KFINQLSLFKN---DDNNNLKEYLNYVKV 938
            SGA D     R +L A+++ ALK A +T+  + +  + +F     DD      Y  Y + 
Sbjct: 891  SGALDNLGPNRAVLAAALEDALKAAAQTQSNQSLGMMDMFGEAFADDEAESDPYEAYRRA 950

Query: 939  PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELK 997
              W+ K+ L  EK+ LG  L+ H    YE E+ +F+   + +LKP+     V+G++  ++
Sbjct: 951  REWTDKERLAGEKETLGLYLTGHPIDEYEKELARFVSTRIVDLKPSREPQRVAGLVVAVR 1010

Query: 998  LKTTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
               + RG  +  I +DD +  +E  +  ++Y++ +  ++ +++LIV G+V  D F   +R
Sbjct: 1011 TMKSKRGDTMAFITLDDRTGRIEASLFGEIYDQLRGQIEADQVLIVEGEVSSDDFSGGLR 1070

Query: 1057 INAEKIFDINVARILYGKKFSVMFNRTFN----ISILKKILLRFKCKNGLPFVLYYCINK 1112
            +  +++  +  AR  YG+   +  + T      +  L++ L+  +   GLP  L Y  N+
Sbjct: 1071 LRGKEVTPMVAARARYGEAVELSLDGTRVNGRLVESLRESLVPHRDDGGLPVRLRYR-NE 1129

Query: 1113 SIKYEMKFPLNYKVQPIDDLKLAL 1136
            +    ++    ++V P D+L +AL
Sbjct: 1130 AAAGWLELDAQWRVAPSDELLIAL 1153


>gi|292492697|ref|YP_003528136.1| DNA polymerase III subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581292|gb|ADE15749.1| DNA polymerase III, alpha subunit [Nitrosococcus halophilus Nc4]
          Length = 1158

 Score =  995 bits (2573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1114 (44%), Positives = 719/1114 (64%), Gaps = 31/1114 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL LH+EYS++DGL+RI  ++ AA     PA+A+TD +N+F ++KFY++A  +G+KPI
Sbjct: 5    FVHLHLHTEYSMVDGLVRIRPLVRAAREAGMPAVAVTDQNNIFAMVKFYRAAQAEGVKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG DV++ +  E+ + SR+ LL +N  GY  L  LLS+AY E   +G   ++  WL+   
Sbjct: 65   IGADVFLVDSTESSRASRVTLLCQNEGGYCNLSRLLSRAYSEGQYHGVPRLQWNWLQSQS 124

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              DGLI LSG   GD+G A+  G N  A+    RW  +FP  +Y+E+ R  +      + 
Sbjct: 125  --DGLIVLSGGREGDVGQALLAGNNIQAKKLLERWQALFPGRYYLELHRTGREGEEDYLH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A   + P+VAT+ ++FL+  +F AHE R CI EG  L + +R + ++++Q  +T 
Sbjct: 183  GAVALALACDTPVVATNDVRFLRTQDFEAHEARVCIHEGRTLDDPRRPRHYSEQQYLRTS 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            SEM +LF D+P A++NT+EIA+RCNL+L  G   LP FP P+ ++I  FL  +++ GL++
Sbjct: 243  SEMAELFADLPEALENTVEIARRCNLELTLGSHYLPNFPVPEGLSIEAFLEVEARRGLEQ 302

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  LY      + ++  Y+ RL  E+  I +M F GYFLIV+DFI+WAK N IPVGPGR
Sbjct: 303  RLAKLYPSETDREIKQPTYETRLAEELAVINQMGFPGYFLIVADFIRWAKKNGIPVGPGR 362

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL+++LLFERFLNP R+S+PDFDIDFC E RDRVI+YV   Y
Sbjct: 363  GSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFCMERRDRVIEYVSHYY 422

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+D VSQI+T+G+MAAK  +RDVGRVL   Y F D I+KLIPF     +TL  A++E   
Sbjct: 423  GRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFD--LKMTLDKALEESEG 480

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
            L  R + EEEVR LI+LA+++EG+ RN G HAGGV+IAP KL  + P Y ++G +G+++Q
Sbjct: 481  LRARYEEEEEVRFLIDLARKLEGLTRNAGKHAGGVVIAPKKLTEYVPYYCEQGASGVVTQ 540

Query: 545  YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYNLL 602
            +DKDDIE IGL+KFDFLGL TL+I+D  +  I  ++    T    L  LP+ND ++Y LL
Sbjct: 541  FDKDDIEAIGLVKFDFLGLRTLTIIDWALQAINQQRAQQGTAPLDLALLPMNDPESYALL 600

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGEY- 659
            K+  T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ ++  RKHG   
Sbjct: 601  KRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDDYINRKHGRAK 660

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
             +YP P  + +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  EM + R 
Sbjct: 661  VDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAKQRA 720

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA   G+ + +A  IF+ +EKFA YGFNKSH+ AYAL++Y TAYLK HY + +MAA
Sbjct: 721  IFTEGAKARGVEEERATAIFDLMEKFAEYGFNKSHSAAYALIAYQTAYLKAHYPAPYMAA 780

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             LS  MD+T K+   +++  +   L +LPP++N+S Y F     + GK+  IRYGLGAIK
Sbjct: 781  VLSSDMDNTEKVAAFIQEC-QVMNLEVLPPDVNVSDYRF----SAQGKN-AIRYGLGAIK 834

Query: 840  GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            G G + +E I+ ER + G + +LF+F +RID + INRR++ +L  SGA D     R  L 
Sbjct: 835  GVGAAALEGIIKEREQHGPYQDLFEFCRRIDLRKINRRVLEALNRSGALDPLGANRATLE 894

Query: 899  ASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGF 956
            AS++ AL  AE+  +   + Q  LF  D      +  NY +   W ++Q L  EK+ LG 
Sbjct: 895  ASLETALALAEQHSRNTSLGQNDLFGLDCVLEGSQAGNYTETQEWDEEQRLALEKETLGL 954

Query: 957  CLSEHIFCIYETEIRQFIPIYLSELKPTYS--------CTVSGIITELKL-KTTYRGKIL 1007
             LS H    YE E+RQ  P  L+EL    S          ++G+I  ++  K    G+  
Sbjct: 955  YLSGHPIDRYEQELRQIAPRRLAELVSQASNRLNYNQRVIIAGLIGSVRTSKARQGGRNA 1014

Query: 1008 IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
             + +DD S  +EV    ++++K + +L+ + ++++ G +  D +     + AEK++ I  
Sbjct: 1015 FVTLDDRSARLEVKTFAEVFDKYRELLQPDHIVVIDGTLGWDSYADTATVTAEKVYSIAE 1074

Query: 1068 ARILYGKKFSVMFNRTF----NISILKKILLRFK 1097
            AR  + K   + F+ T      ++ L KIL  F+
Sbjct: 1075 ARGAFAKILEIGFDGTCVGQEAVAELAKILAPFR 1108


>gi|149377463|ref|ZP_01895205.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893]
 gi|149358230|gb|EDM46710.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893]
          Length = 1160

 Score =  995 bits (2573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1161 (42%), Positives = 753/1161 (64%), Gaps = 40/1161 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HSEYS++DGL+R+  +I   A    PA+ +T+ SN+  +++FYK+A   G
Sbjct: 1    MSQTFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+W+ N  E   P R+ LL +NN+GYL L E++S  Y E   +G+  I+ +WL
Sbjct: 61   VKPIIGADLWVENPDEPDNPFRITLLARNNDGYLNLTEVVSLGYTEGQRFGKPIIQRQWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E     +GLIALSGA LGD+G A+ +G+ D+A   A  W  ++P +FY+E+QR  +P   
Sbjct: 121  ENRT--EGLIALSGARLGDVGKALMSGKLDLARQRAEYWMSLYPGSFYLELQRTGRPGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ + FL   +F AHE R CI E   L + +R ++F+ +Q 
Sbjct: 179  DCLHLNVELAEALGCPVVATNDVHFLHAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EMI+LF DIP A++NT+EIA+RC++ +  G+  LP +P P  + ++++    S+ 
Sbjct: 239  LRSADEMIELFSDIPEAVENTVEIARRCSVPVRMGEYFLPNYPIPDGMTMDEYFRKVSEE 298

Query: 301  GLKKRLL-NLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL   L KD   Y  ++  Y KRL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLAKTLSKDDPEYDSKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+  ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIAY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V ++YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+PG  +TL  A+
Sbjct: 419  VAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEPG--MTLEKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++EPQL E ++N+EE +++ E+A ++EG+ RN G HAGGV+IAP+K+ +F PLY  +   
Sbjct: 477  EQEPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
             +++Q+DK D+E+ GL+KFDFLGL TL+I+D   + +K IN +          +N++PL+
Sbjct: 537  SLVTQFDKGDVEDAGLVKFDFLGLRTLTIID---WALKMINPRLEKQGKPALDINEIPLD 593

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  ++++LKKA T AVFQLES+GMK++++  +PD  E++IAL++L+RPGP+   ++ +F 
Sbjct: 594  DVPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFI 653

Query: 653  RRKHGEY---FNYPDPR---TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG     F +PD +    K VL  TYG+++YQEQVMQIAQ++ GYSLG AD+LRRA+
Sbjct: 654  DRKHGRQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYSLGNADMLRRAM 713

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + ++FF +G     ++K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 714  GKKKPEEMAKQKQFFLDGCENNDINKTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTL 773

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA L+  M +T+K+  LV++  ++ GL +L P+++ S+Y F   +  DG
Sbjct: 774  WLKAHYPAEFMAAVLTADMQNTDKVVTLVEEC-RSMGLELLVPDVSRSEYTF--TVNDDG 830

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSG 885
                I YGLGAIKG G+  I +I   R  G  + ++FDF +R+D K +N+R + +LI SG
Sbjct: 831  ---AIVYGLGAIKGLGEGPIGSIQAGRADGEPYQDIFDFCRRVDLKKVNKRAMEALIRSG 887

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKN--DDNNNLKEYLNYVKVPSW 941
            A D     R  L+ASID A++ A +  +   +    +F +      +   Y +   V  W
Sbjct: 888  AMDKLGAGRAQLMASIDKAIQQAGQQSRNETVGMTDMFGDMLMGGEDGDPYSDVANVREW 947

Query: 942  SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSG-IITELKLK 999
             KK+ L  EK  LG  L+ H F  YE E+R+F+   +++LKP      V+G ++ +  +K
Sbjct: 948  PKKERLKGEKDTLGLYLTGHPFDEYEKEVRRFVRSSIADLKPARQPQRVAGLVVAQRSMK 1007

Query: 1000 TTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T     +  I +DD S  +E  + ++ + +N+ +L+ +++++V G+V  D +   +++  
Sbjct: 1008 TRTGSTMAFITLDDRSARIEATLFSEAFFENRELLQSDQVIVVEGQVSHDDYSGQMKMRV 1067

Query: 1060 EKIFDINVARILY--GKKFSVMFNRTFN--ISILKKILLRFKCKNGLPFVLYYCINKSIK 1115
              + D+  AR  +  G K ++  ++  N  +  L   L  F+C+    ++ Y   N S +
Sbjct: 1068 SSVMDVGTARQQFSRGLKLAIHADQLQNGLLDKLDSTLRPFRCEGSPVWIEYSSDNASTR 1127

Query: 1116 YEMKFPLNYKVQPIDDLKLAL 1136
             E+    +++VQP DDL L L
Sbjct: 1128 IELG--ESWRVQPDDDLLLEL 1146


>gi|238020460|ref|ZP_04600886.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147]
 gi|237867440|gb|EEP68446.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147]
          Length = 1156

 Score =  994 bits (2569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/1128 (47%), Positives = 722/1128 (64%), Gaps = 33/1128 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P  I LR HSE+SI D ++RI+D + AA  +  PALA+TDL N FG++KFYK+    G
Sbjct: 1    MTP--IPLRAHSEFSITDSIIRISDYVAAARAENYPALALTDLMNTFGLLKFYKACRKAG 58

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY-IENINYGRAEIRIEW 119
            IKPI G DV I N  + +KP R +LL++N  GY++L ELL+ A+  ++ N    +I   W
Sbjct: 59   IKPICGADVRIENPEQPEKPHRAVLLIRNEQGYIRLNELLTAAFEADDRNKHTPQINQAW 118

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPN 178
            L +     GL+ LSGA +G++G  +  G  D A   A++++  FP+ FY+E+QR  ++P+
Sbjct: 119  LAQGD-NSGLLCLSGAQMGEVGSHLMLGNEDKAHAAAQKYAAWFPNAFYLELQRLPEKPD 177

Query: 179  MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
                +   + IA  + LP+VATHP QFL++ ++ AH+ R CIA G  L + KR   FT  
Sbjct: 178  WEISVSGSLKIAQALQLPVVATHPTQFLQREDYKAHDARVCIAGGWTLIDPKRPHDFTPG 237

Query: 239  QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
            Q+F T  E    F DIP A+ N+ EIAKRCNL L  GK  LP FPTP  +++ND+L   +
Sbjct: 238  QHFLTPDEFAARFADIPEALANSQEIAKRCNLTLTLGKNFLPLFPTPDGMDLNDYLRHLA 297

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
              GL++RL  LY +       +  Y+ RL FE++ IIKM F GYFLIV DFI WAKNN  
Sbjct: 298  NEGLQERLAVLYPNEAERAQRQPEYQARLDFELDIIIKMQFPGYFLIVQDFINWAKNNGC 357

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC   R RVI+
Sbjct: 358  PVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQANRGRVIE 417

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV+++YGK AVSQIVTFG M++K  IRDVGRVL L ++ CD +SKLIP +  K + L +A
Sbjct: 418  YVREKYGKQAVSQIVTFGAMSSKAVIRDVGRVLQLPFALCDRLSKLIPLEANKPLHLKDA 477

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +  E    E+I  EEE  +L+ LA ++E + RN+GMHAGGVLIAPSK+ +FC +Y+ +  
Sbjct: 478  LAAE-PEIEQIIREEEADELLNLAMKLEDLTRNLGMHAGGVLIAPSKISDFCGVYQADEN 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
               +S +DK D+EEIGL+KFDFLGL  L+I++    FI++  T   +  ++ +PL+D+  
Sbjct: 537  ASPVSMFDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIRQ--TTGEHVDVSHIPLDDQVA 594

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGE 658
            Y + + ANT AVFQ ES GMK ML +A     EEIIA +SLYRPGPMDLI +F  R  G 
Sbjct: 595  YKIFRDANTTAVFQFESSGMKKMLAQANTTNLEEIIAFVSLYRPGPMDLIPDFIERMKGA 654

Query: 659  YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
             F Y  P  + VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK  EM++HR
Sbjct: 655  KFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPEEMVKHR 714

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + F  GA K G+S+ KA+EIF+ +EKFAGYGFNKSHA AYA +SY TA+LK HY + FMA
Sbjct: 715  EIFAEGAAKQGISREKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKAHYPAEFMA 774

Query: 779  ANLSLSMDDTNKIKILVKDA-IKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
            A +S  +D+T+++K+   DA  K  G+  LPP++N S Y F P        K+IRY LGA
Sbjct: 775  ATMSSELDNTDQLKVFFDDAQSKLNGIRFLPPDVNESFYRFIP-----NAQKQIRYALGA 829

Query: 838  IKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            IKGTG++ + AIV  R+ G  FT+LFDF +R+ K++ NRR++ +LI  GAFD     R M
Sbjct: 830  IKGTGEAAVNAIVAARESGGKFTDLFDFCERVGKQHANRRVLEALIRGGAFDSIEPNRAM 889

Query: 897  LVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGF 956
            L+ +ID+A+  AE+     NQ  LF   ++      L Y++   W++  +L EEK+ +GF
Sbjct: 890  LLGNIDLAIAQAEQKADNANQGGLFDMVEDALADVPLQYIE--PWNEATKLAEEKQAIGF 947

Query: 957  CLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRGKILIIVIDDNS 1015
             LS H F  Y +E+R F P  L  LK       ++G  T ++   T  GK++ ++++D++
Sbjct: 948  YLSGHPFAPYASEVRAFAPTPLGSLKAKDGTQRLAGFATSIRSIMTKNGKMIAVLLEDDT 1007

Query: 1016 NSVEVIINNQLYEK-NKNILKENELLIVSGKVLEDRF---------LKNIRINAEK---I 1062
               EVII   L +   K  LK +++LI    V EDRF         + NI  + +K   I
Sbjct: 1008 AKQEVIIRGDLLDGIPKETLKADQILICDCSVREDRFNPDGGLRVNVANIGSDEQKQAGI 1067

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNG--LPFVLYY 1108
              +N AR  +    ++      +I  L K+L      NG  +P +L Y
Sbjct: 1068 HRLNEARSRFAISLTLNLRPEHDIDALAKLLRPHTQANGNKIPLILTY 1115


>gi|333376107|ref|ZP_08467899.1| DNA-directed DNA polymerase III alpha subunit [Kingella kingae ATCC
            23330]
 gi|332968842|gb|EGK07889.1| DNA-directed DNA polymerase III alpha subunit [Kingella kingae ATCC
            23330]
          Length = 1164

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1132 (46%), Positives = 734/1132 (64%), Gaps = 45/1132 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+ LR HSE+SI DG++R++++   AA    PALA+TDL N FG+IKFYK+   KGIKPI
Sbjct: 21   FVPLRAHSEFSITDGIIRVSELASHAAKLGYPALALTDLMNTFGLIKFYKACRKKGIKPI 80

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK-- 122
            IG D+ + N  +      +LLL KN+ GY++L ELL+ AY  +   GR     + LE+  
Sbjct: 81   IGADIRVENPNQADDFYSVLLLAKNHQGYVRLAELLTAAYEGD---GRDLHCPKVLERDL 137

Query: 123  -NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFA---------RRWSKIFPDNFYIEIQ 172
             N    GLI LSGA  G++G      R+ + +N A           W   FP+ FY+E+Q
Sbjct: 138  ANGDNSGLICLSGAQQGEVG------RHLLLDNVADARAAAQKYAAW---FPNAFYLELQ 188

Query: 173  RF-KQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKR 231
            R  ++P     +   +++A+ ++LP+VATHPIQFL++ +F AH+ R CIA G +L++ KR
Sbjct: 189  RLNEKPEWEQCVAGSLHLAAELDLPVVATHPIQFLQREDFKAHDARVCIAGGWVLADKKR 248

Query: 232  IKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININ 291
             + F   Q F +  EM + F DIP A+ N++EIAKRCN+ L  GKP LP FPTP  +++N
Sbjct: 249  PQNFVDSQYFVSPQEMAERFADIPEALANSLEIAKRCNVTLTLGKPVLPNFPTPNGMDLN 308

Query: 292  DFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQ 351
            D+L+  S  GL++R+  LY + +    +   Y+ RL FE++TII+M F GYFLIV DFI 
Sbjct: 309  DYLVHLSNEGLRERMAVLYPNEDERTQKMPEYQARLDFELQTIIQMGFPGYFLIVQDFIN 368

Query: 352  WAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPE 411
            WAKNN  PVGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFDIDFC  
Sbjct: 369  WAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLKYALLFERFLNPERVSMPDFDIDFCQA 428

Query: 412  GRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGK 471
             R RVI+YV+++YGK+AVSQIVTFGT+++K  IRDVGRVL L +  CD +SKL+P    K
Sbjct: 429  NRGRVIEYVREKYGKEAVSQIVTFGTLSSKAVIRDVGRVLQLPFGLCDRLSKLVPVVQNK 488

Query: 472  LITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
             + L  A++EEP++ + I+ EE    L    K +E + RN+GMHAGGVLIA  K+ +FC 
Sbjct: 489  PLGLQAALEEEPEIGKIIQEEEAEELLELAMK-LEDLTRNLGMHAGGVLIALGKISDFCG 547

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            +Y+ +  +  +S YDK D+E+IGL+KFDFLGL  L+I++    FIK+      +  +N +
Sbjct: 548  VYQADESSSPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQNFIKQTTGNVVD--VNYI 605

Query: 592  PLNDKDTYNLLKK-ANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKN 650
            PL+D+  Y + +   NT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPM+ I +
Sbjct: 606  PLDDQKAYQIFRSPPNTTAVFQFESSGMKQMLKTAHTTKFEELIAFVSLYRPGPMENIPD 665

Query: 651  FCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            F  R  G  F Y  P  + VL  TYGIMVYQEQVMQ AQ++GGYSLG ADLLRRA+GKKK
Sbjct: 666  FVARMKGADFEYLHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKK 725

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM +HR+ F  GA + G+S+ KA+EIF+ +EKFAGYGFNKSHA AYA +SY TA+LK 
Sbjct: 726  PEEMAKHREIFAKGAAEQGISQGKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKA 785

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDA-IKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            HY + FMAA +S  +D+T+++K+   DA  K  G+S L P+IN S Y F P      K+K
Sbjct: 786  HYPAEFMAATMSSELDNTDQLKVFYDDARSKLNGISFLSPDINESFYRFIP-----NKNK 840

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +IRY LGAIKGTG++ I AIV ER + G F +LFDF +R+ K++INRR I +LI  GAFD
Sbjct: 841  QIRYALGAIKGTGEAAINAIVAERERGGKFVSLFDFCERMGKQHINRRTIEALIRGGAFD 900

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
                 R ML+ ++++AL+NAE+      Q  LF  D  ++  + +     P+W   Q+L 
Sbjct: 901  SIEPNRAMLLENVELALQNAEQKSSNATQGGLF--DMLDDALDEIQMQPAPAWDLAQQLT 958

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY-SCTVSGIITELKLKTTYRGKIL 1007
            EEK  +GF LS H F  +E E+R+F P  L+ L+    S  ++G +T ++   T +GK++
Sbjct: 959  EEKTAIGFYLSGHPFKPHEAEVRRFTPTKLAHLRAQNDSQRIAGFVTSVRTINTKKGKMV 1018

Query: 1008 IIVIDDNSNSVEVIINNQLYEKN-KNILKENELLIVSGKVLEDRFLKN---IRINAEKIF 1063
             IV++D+S + EV++  +  E   + +L+ +++LI   +V EDR  K+   +RIN   ++
Sbjct: 1019 AIVLEDDSATHEVLLMGETLENTPRELLQADQILICDCRVREDRGEKSDGGLRINVNAVY 1078

Query: 1064 DINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKS 1113
             +N AR+ Y     +      +I  L  +L  +       +P  +YY  +K+
Sbjct: 1079 TLNQARLHYAGCLKLHLRPEHDIDALVALLQPYTQSENKRIPVQIYYQNDKA 1130


>gi|399115487|emb|CCG18289.1| DNA polymerase III, alpha subunit [Taylorella equigenitalis 14/56]
          Length = 1178

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1140 (44%), Positives = 741/1140 (65%), Gaps = 52/1140 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HLR H+E+S+ DG +RI ++I    +   PA+AI+DL+NLFG +KFYK A   GIKP
Sbjct: 8    QFVHLRCHTEFSVFDGTIRIEELISKVQSVGMPAIAISDLANLFGFVKFYKGARKLGIKP 67

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I  CD  +  +  + +  R+ ++  NN GYL+LCE++SK ++EN     A ++ EWL   
Sbjct: 68   IAACDFVLDTQGVSGEAHRIEIIATNNKGYLRLCEIISKVWLENEGLDVARLKKEWLTDT 127

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
                GLIALSG   GDIG A+ N   + A      W + FPD FYIE+QR + P+ + + 
Sbjct: 128  S---GLIALSGGIYGDIGQALFNKPIE-APKLLEDWVERFPDGFYIELQR-ELPDQHGRY 182

Query: 184  QQF-----------INIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRI 232
             +F           + +A+   +P+VATHPIQFL+   F +H+VR CIAEGE LS+ KR 
Sbjct: 183  SKFGQLSNEYSEMAVQLAAKFGVPVVATHPIQFLESDGFDSHDVRVCIAEGEFLSDPKRK 242

Query: 233  KKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININD 292
            ++F++EQ F +  +M KLF DIPSAI NT EIAKRCN+ L+ GKP+LP FPTP+ +++++
Sbjct: 243  QRFSREQYFYSPEQMCKLFEDIPSAITNTFEIAKRCNITLKLGKPQLPIFPTPEGVSVDE 302

Query: 293  FLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQW 352
            +    +K GL KRL  L+ D  I K +   Y+ RL  EIE I  M F+GYFLIV DFI W
Sbjct: 303  YFAYLAKEGLAKRLEFLFPDEAIRKEKAPIYQARLNKEIEVIESMGFTGYFLIVQDFINW 362

Query: 353  AKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEG 412
             KNN +PVGPGRGSGA SLVAYSL IT +DPL Y+LLFERFLNP R+SMPDFD+DFC + 
Sbjct: 363  GKNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNPERVSMPDFDVDFCQDN 422

Query: 413  RDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKL 472
            R++VI YV D+YG+D+VSQIVTFGT+ A+  ++DVGRV+ + Y+ CD +SKLIP  P   
Sbjct: 423  REKVIDYVIDKYGEDSVSQIVTFGTLGARAVVKDVGRVMQVPYAVCDELSKLIPNSPVDP 482

Query: 473  ITLSNAIKEEPQLAERIKNEE----EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLIN 528
             TL  A+ E   + +   N E    +++ +++ + ++EG+ RN G HAGGVLIAP KL +
Sbjct: 483  YTLQRALNEIKDIQDLYNNSEGDSSDIKTVVDYSLKIEGLTRNTGTHAGGVLIAPGKLTD 542

Query: 529  FCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL 588
            F PL++  G T  +SQYDK+DIE++GL+KFDFLGL  L+ILD T+ ++K+ N    +F L
Sbjct: 543  FTPLHRLPGSTTAVSQYDKNDIEDVGLVKFDFLGLRNLTILDWTVRYVKEFNEAQKDFDL 602

Query: 589  NKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD-- 646
            ++LPL+DK TY LL   NT AVFQLES GMKN+L + KP  FE+I+A+++LYRPGP++  
Sbjct: 603  DRLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLMKLKPSTFEDIVAVLALYRPGPLNSG 662

Query: 647  LIKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
            ++ +F  RKHG    +Y     + VL  TYG++VYQEQVM I+QI+GGYSLG AD+LRRA
Sbjct: 663  MVDDFVDRKHGRAKVDYFHKDLESVLKPTYGVIVYQEQVMLISQIIGGYSLGGADILRRA 722

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM   R+ FQ GA++ G   + A  +F+ +E FA YGFNKSH+ AYAL++Y T
Sbjct: 723  MGKKKLEEMARQREIFQKGAMERGYDPNLATNLFDLMEMFASYGFNKSHSVAYALIAYQT 782

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
            A+LK ++ + FMAA ++  M+DT+K++I  +D I   GL +L PNIN S Y F P+ +  
Sbjct: 783  AWLKAYHPAEFMAATMTSDMNDTDKVQIFWEDCIHN-GLKLLAPNINTSYYRFEPVKDEQ 841

Query: 826  GK----HKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINS 880
                   K I YGLGAIKG G++ +E IV  R + G F +L D  KR+D+  + +R I +
Sbjct: 842  SNLGLPPKTIGYGLGAIKGVGQNVVEEIVKARNEGGDFISLQDLIKRVDRTIVTKRSIEA 901

Query: 881  LINSGAFDCFNEKRYMLVASID---VALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVK 937
            LI +GA D  ++ R +L+A +D   +A   AE++K   NQ  LF +D+   ++     V 
Sbjct: 902  LIKAGAMDVLDKNRALLMAMVDDCYIAANQAEESK---NQWDLFADDEGGAIE-----VS 953

Query: 938  VP----SWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            VP    +W+ K+ L  E++ +GF  S  +F ++ +E+R+FI   +  L       +++G+
Sbjct: 954  VPEGIEAWTLKEVLDAERESIGFYFSNDLFGVWRSEVRKFIKTPIKNLGSNQGALSIAGV 1013

Query: 993  ITELKL---KTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047
            +T L++   K + +G  +++ + +DD S +VEV     +YE+ K+ +K++ LL+V  +  
Sbjct: 1014 LTNLRINISKNSDKGDNRLIFLTLDDGSETVEVFCPPSIYERYKSRIKKDSLLVVQVQAK 1073

Query: 1048 EDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
             + ++  +R  AE ++D   AR  + + F V  ++  N  + K I   ++   +N LP V
Sbjct: 1074 FNSYMNKMRYTAECLYDYQTARERWARTFEVDISKDINFDVFKSIFAPYRGAPENNLPGV 1133


>gi|83644688|ref|YP_433123.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396]
 gi|83632731|gb|ABC28698.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396]
          Length = 1158

 Score =  991 bits (2563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1155 (44%), Positives = 750/1155 (64%), Gaps = 45/1155 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            FIHLR+H+E+S++DGL+++  +++  A+   PA+A+TD SN+  ++K+YK+A   G+KPI
Sbjct: 4    FIHLRIHTEFSLVDGLVKVKPLVKKLADMGMPAVAVTDQSNMCCLVKYYKAASGAGVKPI 63

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G DVW+ N  +   P RL L  +N  GY  L EL+S+ + E  ++GRA ++ +W+    
Sbjct: 64   VGADVWVENLDDPLAPFRLTLFARNETGYRNLTELISRGFTEGQSHGRAIMKKDWIAAQA 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GL+ALSG+  GD+G A+  G+ ++A      W ++FPD +Y+E+QR  + N    + 
Sbjct: 124  --EGLLALSGSKYGDVGQALLAGKQELARERLGVWMEMFPDAYYLELQRTGRINDEECVH 181

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A     P+VAT+ + FL++ +F AHE R CI EG  L + +R ++F++EQ  KT 
Sbjct: 182  ASVELALETGCPVVATNDVHFLERDDFEAHEARVCIHEGRTLDDPRRERRFSEEQYLKTA 241

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF DIP AI NT+EIAKRCN+ L  GK  LP +P P+ + I++F I  S+ GL++
Sbjct: 242  EEMCELFSDIPEAIANTVEIAKRCNVSLRLGKYFLPNYPIPEGMTIDEFFIKVSEEGLEE 301

Query: 305  RLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L K  DPE Y  ++  Y  RL+FE++ I +M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 302  RLATLLKQDDPE-YGNKRQSYYDRLKFELDIITQMGFPGYFLIVMDFIKWAKNNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI YV +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIAYVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    YS  D +SKLIPF+ G  +TL+ A ++E
Sbjct: 421  AYGRNAVSQIITFGTMAAKAVVRDVARVQGRPYSMGDRLSKLIPFEVG--MTLAKAYEQE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L E +  +E+  ++ E+A+++EG+ RNVG HAGGV+IAP+KL +F PLY  E  +G++
Sbjct: 479  EPLREYLTTDEDAAEIWEMARKLEGVTRNVGKHAGGVVIAPTKLTDFAPLYCDETGSGLV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DKDD+E+ GL+KFDFLGL TL+I+D  +  I + + +       +N +PL+D  T+N
Sbjct: 539  TQFDKDDVEQAGLVKFDFLGLRTLTIVDWAVDIINRQHAEKGQPPLDINFIPLDDAPTFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LLK   T AVFQLES+GMK +++   PD FE+IIAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 599  LLKHGETTAVFQLESRGMKELIRRLMPDCFEDIIALVALFRPGPLQSGMVDDFINRKHGR 658

Query: 659  Y-FNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                YP P       K VL  TYGI++YQEQVMQIAQ++ GY+LG ADLLRRA+GKKK  
Sbjct: 659  AELAYPHPDYQLESLKPVLQPTYGIILYQEQVMQIAQVMAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + +  F  G+I  GL +  A +IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK HY
Sbjct: 719  EMAKQKAIFVEGSINQGLEQDLAEKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKCHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA L+  M +T+K+  LV++  +   L ++ P++N S Y F      D KH +I 
Sbjct: 779  PAPFMAAVLTADMQNTDKVVTLVEEC-RRMKLELVLPDVNNSSYTF----TVDDKH-RIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGA+KG G+  +++I+  RK G  F +LFDF +R+D + +N+R + +L+ SGA D   
Sbjct: 833  YGLGAVKGLGEGPVQSILDARKEGGPFRDLFDFCQRVDLRRVNKRALEALVRSGAMDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLF-----KNDDNNNLKEYLNYVKVPSWSKK 944
              R  ++ASI+ A++ A++  +      L LF     + D N     Y     +  WS K
Sbjct: 893  PSRARMMASINEAVRRADQHSRNEDAGMLDLFGEVVPETDPN----PYSATEGMQEWSDK 948

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELK-LKTTY 1002
            + L  EK+ LG  L+ H F  YE E+R+F+   +SEL+P  S   V+G++  ++ +K+  
Sbjct: 949  ERLKLEKETLGLYLTGHPFDEYEQEVRRFVRTPISELRPGKSPQNVAGLVVAVRTMKSKR 1008

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
             G I    +DD S  +EV   +  YE+ K +L  + +L+V G V ED +   + + A+  
Sbjct: 1009 GGYIGFATLDDRSGRIEVTFFSDAYEQAKEMLHNDRILVVEGVVGEDDYSGGLSVRAKMT 1068

Query: 1063 FDINVARILYGKKFSVM-----FNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYE 1117
             DI  AR+ + K+  +      FN  F I  L  +L   + + G P ++ Y   ++ +  
Sbjct: 1069 SDIGQARLKFAKELILFVHEKDFNNGF-IDELGGVLGEHRAE-GCPVLINY-ETETARTR 1125

Query: 1118 MKFPLNYKVQPIDDL 1132
            ++   +++V P D+L
Sbjct: 1126 LRLAEDWRVNPSDEL 1140


>gi|319779485|ref|YP_004130398.1| DNA polymerase III subunit alpha [Taylorella equigenitalis MCE9]
 gi|397661716|ref|YP_006502416.1| DNA polymerase III subunit alpha [Taylorella equigenitalis ATCC
            35865]
 gi|317109509|gb|ADU92255.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9]
 gi|394349895|gb|AFN35809.1| DNA polymerase III, alpha subunit [Taylorella equigenitalis ATCC
            35865]
          Length = 1178

 Score =  991 bits (2563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1140 (44%), Positives = 741/1140 (65%), Gaps = 52/1140 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HLR H+E+S+ DG +RI ++I    +   PA+AI+DL+NLFG +KFYK A   GIKP
Sbjct: 8    QFVHLRCHTEFSVFDGTIRIEELISKVQSVGMPAIAISDLANLFGFVKFYKGARKLGIKP 67

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I  CD  +  +  + +  R+ ++  NN GYL+LCE++SK ++EN     A ++ EWL   
Sbjct: 68   IAACDFVLDTQGVSGEAHRIEIIATNNKGYLRLCEIISKVWLENEGLDVARLKKEWLTDT 127

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
                GLIALSG   GDIG A+ N   + A      W + FPD FYIE+QR + P+ + + 
Sbjct: 128  S---GLIALSGGIYGDIGQALFNKPIE-APKLLEDWVERFPDGFYIELQR-ELPDQHGRY 182

Query: 184  QQF-----------INIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRI 232
             +F           + +A+   +P+VATHPIQFL+   F +H+VR CIAEGE LS+ KR 
Sbjct: 183  SKFGQLSNEYSEMAVQLAAKFGVPVVATHPIQFLESDGFDSHDVRVCIAEGEFLSDPKRK 242

Query: 233  KKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININD 292
            ++F++EQ F +  +M KLF DIPSAI NT EIAKRCN+ L+ GKP+LP FPTP+ +++++
Sbjct: 243  QRFSREQYFYSPEQMCKLFEDIPSAITNTFEIAKRCNITLKLGKPQLPIFPTPEGVSVDE 302

Query: 293  FLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQW 352
            +    +K GL KRL  L+ D  I K +   Y+ RL  EIE I  M F+GYFLIV DFI W
Sbjct: 303  YFAYLAKEGLAKRLEFLFPDEAIRKEKAPIYQARLNKEIEVIESMGFTGYFLIVQDFINW 362

Query: 353  AKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEG 412
             KNN +PVGPGRGSGA SLVAYSL IT +DPL Y+LLFERFLNP R+SMPDFD+DFC + 
Sbjct: 363  GKNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNPERVSMPDFDVDFCQDN 422

Query: 413  RDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKL 472
            R++VI YV D+YG+D+VSQIVTFGT+ A+  ++DVGRV+ + Y+ CD +SKLIP  P   
Sbjct: 423  REKVIDYVIDKYGEDSVSQIVTFGTLGARAVVKDVGRVMQVPYAVCDELSKLIPNSPVDP 482

Query: 473  ITLSNAIKEEPQLAERIKNEE----EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLIN 528
             TL  A+ E   + +   N E    +++ +++ + ++EG+ RN G HAGGVLIAP KL +
Sbjct: 483  YTLQRALNEIKDIQDLYNNSEGDSSDIKTVVDYSLKIEGLTRNTGTHAGGVLIAPGKLTD 542

Query: 529  FCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL 588
            F PL++  G T  +SQYDK+DIE++GL+KFDFLGL  L+ILD T+ ++K+ N    +F L
Sbjct: 543  FTPLHRLPGSTTAVSQYDKNDIEDVGLVKFDFLGLRNLTILDWTVRYVKEFNEAQKDFDL 602

Query: 589  NKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD-- 646
            ++LPL+DK TY LL   NT AVFQLES GMKN+L + KP  FE+I+A+++LYRPGP++  
Sbjct: 603  DRLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLMKLKPSTFEDIVAVLALYRPGPLNSG 662

Query: 647  LIKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
            ++ +F  RKHG    +Y     + VL  TYG++VYQEQVM I+QI+GGYSLG AD+LRRA
Sbjct: 663  MVDDFVDRKHGRAKVDYFHKDLESVLKPTYGVIVYQEQVMLISQIIGGYSLGGADILRRA 722

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM   R+ FQ GA++ G   + A  +F+ +E FA YGFNKSH+ AYAL++Y T
Sbjct: 723  MGKKKLEEMARQREIFQKGAMERGYDPNLATNLFDLMEMFASYGFNKSHSVAYALIAYQT 782

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
            A+LK ++ + FMAA ++  M+DT+K++I  +D I   GL +L PNIN S Y F P+ +  
Sbjct: 783  AWLKAYHPAEFMAATMTSDMNDTDKVQIFWEDCIHN-GLKLLAPNINTSYYRFEPVKDEQ 841

Query: 826  GK----HKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINS 880
                   K I YGLGAIKG G++ +E IV  R + G F +L D  KR+D+  + +R I +
Sbjct: 842  SNLGLPPKTIGYGLGAIKGVGQNVVEEIVKARNEGGDFISLQDLIKRVDRTIVTKRSIEA 901

Query: 881  LINSGAFDCFNEKRYMLVASID---VALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVK 937
            LI SGA D  ++ R +L+A +D   +A   AE++K   +Q  LF +D+   ++     V 
Sbjct: 902  LIKSGAMDVLDKNRALLMAMVDDCYIAANQAEESK---DQWDLFADDEGGAIE-----VS 953

Query: 938  VP----SWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            VP    +W+ K+ L  E++ +GF  S  +F ++ +E+R+FI   +  L       +++G+
Sbjct: 954  VPEGIEAWTLKEVLDAERESIGFYFSNDLFGVWRSEVRKFIKTPIKNLGSNQGALSIAGV 1013

Query: 993  ITELKL---KTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047
            +T L++   K + +G  +++ + +DD S +VEV     +YE+ K+ +K++ LL+V  +  
Sbjct: 1014 LTNLRINISKNSDKGDNRLIFLTLDDGSETVEVFCPPSIYERYKSRIKKDSLLVVQVQAK 1073

Query: 1048 EDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC--KNGLPFV 1105
             + ++  +R  AE ++D   AR  + + F V  ++  N  + K I   ++   +N LP V
Sbjct: 1074 FNSYMNKMRYTAECLYDYQTARERWARTFEVDISKDINFDVFKSIFAPYRGAPENNLPGV 1133


>gi|160872170|ref|ZP_02062302.1| DNA polymerase III subunit alpha [Rickettsiella grylli]
 gi|159120969|gb|EDP46307.1| DNA polymerase III subunit alpha [Rickettsiella grylli]
          Length = 1166

 Score =  988 bits (2555), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1167 (45%), Positives = 761/1167 (65%), Gaps = 46/1167 (3%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            +  FIHL LHSEYS++DGL+RI  +++ A     PALA+TDLSNLF  IKFY++A  KGI
Sbjct: 1    MSSFIHLHLHSEYSLVDGLIRIEKLVDKACELSMPALAVTDLSNLFATIKFYQAAIKKGI 60

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            KPIIG +  + ++ E ++  +L+LL +N  GY  L +L+SK+Y+EN   G+  ++ +W  
Sbjct: 61   KPIIGAECRVKDDQEGQE-YQLILLCQNLRGYRNLIQLISKSYLENAKEGQPLLQKDWF- 118

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
             + Y +GLIALSGA  GDI   +      +A ++ + W ++FP+ FY+++QR  +P    
Sbjct: 119  -SIYSEGLIALSGAREGDIVSCLMKKNKSLAVDYLQFWLRLFPNRFYLQVQRLGRPLEEE 177

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             I+  + +A++ N+P+VAT+ + FL   +F AHE + CI  G +L++ KR+K +T +Q  
Sbjct: 178  YIELSVGLAASFNVPVVATNEVCFLVPEDFEAHEAKVCINNGYLLNDPKRLKFYTNQQYL 237

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            ++  EM+ LF DIPSA+ N++EIAKRCNL++E G   LP FP P+ ++    L  +++ G
Sbjct: 238  RSMEEMVVLFADIPSALSNSVEIAKRCNLEIELGASFLPNFPIPEGMSAEKLLTQEAQSG 297

Query: 302  LKKRL-------LNLYKDPEIYKCEKLR-----------YKKRLQFEIETIIKMNFSGYF 343
            L + L       ++  K+ E    EKL            Y  RL  E++ I  M F+ YF
Sbjct: 298  LTRYLGSQSFLRVSQTKNKEFQPIEKLTSPQTFKAFEKIYFDRLHSELQVINSMGFASYF 357

Query: 344  LIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPD 403
            LIV+DFI+WAK N IPVGPGRGSGA SLVAY L IT +DPL Y+LLFERFLNP RISMPD
Sbjct: 358  LIVADFIRWAKKNKIPVGPGRGSGAGSLVAYVLQITGLDPLRYDLLFERFLNPERISMPD 417

Query: 404  FDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISK 463
            FDIDFC EGRDRVI YV  RYG++AVSQI+T+G+MAA+  +RDVGRVL   Y   D I+K
Sbjct: 418  FDIDFCMEGRDRVIDYVTTRYGRNAVSQIITYGSMAARAVVRDVGRVLGYPYGMVDKIAK 477

Query: 464  LIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAP 523
            LIPF+ G  ITL  A+ +E +L  R +NE+E++ LI+LAK++EG++RNVG HAGGV+IAP
Sbjct: 478  LIPFELG--ITLEKALTQEDELKTRYENEDEIKILIDLAKKLEGLVRNVGKHAGGVVIAP 535

Query: 524  SKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTK 582
            S+L++F PLY + G T  I+Q+DKDDIE++GL+KFDFLGL TL+I+D  +  I KK   +
Sbjct: 536  SQLVDFTPLYCERGGTHCITQFDKDDIEKVGLVKFDFLGLRTLTIIDWVVQAINKKKKPE 595

Query: 583  TTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRP 642
                 +  +PL+D  T++LLK   T A+FQLES+GM++++K   PD F+EI+AL++L+RP
Sbjct: 596  EELLDIGTIPLDDVKTFDLLKACKTTAIFQLESRGMRDLIKRLCPDSFDEIVALVALFRP 655

Query: 643  GPMD--LIKNFCRRKHGE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQA 699
            GP+   ++ +F  RKHG  +  Y  P  + +LS TYGI++YQEQVMQIAQ+L GY+LG A
Sbjct: 656  GPLQSGMVDDFINRKHGRAHVQYAHPLLEPILSSTYGIILYQEQVMQIAQVLAGYTLGAA 715

Query: 700  DLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYA 759
            DLLRRA+GKKK+ EM + R  F  GA + G+ +  AN+IF+ +EKFA YGFNKSH+ AYA
Sbjct: 716  DLLRRAMGKKKSEEMAQQRTIFMKGAEQEGIERSLANQIFDLMEKFADYGFNKSHSVAYA 775

Query: 760  LLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFF 819
            L+SY TA+LKTHY++ FMAA LS  MD T+K+ I + D  +   L ILPP+IN S+Y F 
Sbjct: 776  LVSYQTAWLKTHYAAEFMAAVLSSDMDHTDKVVIFL-DECRAMNLPILPPDINCSEYKF- 833

Query: 820  PIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIIN 879
                 D     IRYGLGAIKG G   IE ++ +R+   F +LFD  +R+D + +NRR I+
Sbjct: 834  ---TVDDDTGAIRYGLGAIKGLGLGAIEMLIEQRQQDAFRDLFDLCQRVDFQKLNRRGID 890

Query: 880  SLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYV-KV 938
            +LI SG+ D F   R  L+ +++ AL+ A   +K + + S  K+     +  + N +   
Sbjct: 891  ALICSGSLDSFGLNRATLLENVEAALQAA--IQKSLTKSSGQKDFFGLEMVSHSNQMTHQ 948

Query: 939  PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSE--LKPTYSCTVSGIITEL 996
              W K + L  EK  LGF LS H    Y  E+  FI   L E  +K  ++ T++G +  +
Sbjct: 949  KDWPKLERLQAEKDALGFYLSGHPIENYSNELPHFITSSLRESMIKSGHTITIAGWVLNI 1008

Query: 997  KLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
            +   T RG ++ I+ ++D +  +EV + N+ Y + ++ L +++LLI+ G+V +D + KN+
Sbjct: 1009 RSLWTKRGDRMAILTLEDTNGRLEVTLFNEGYAQYRDKLSKDKLLIIEGEVQQDEYTKNM 1068

Query: 1056 RINAEKIFDINVARILYGKKFSVMFNR----TFNISILKKILLRFKCKNGLPFVLYYCIN 1111
            RI  +KI DIN AR  + K   + F++       +  LKKI++ F C    P  + Y  +
Sbjct: 1069 RILGKKILDINEARASHAKNVIIKFSKPHVNPLLLDDLKKIMINF-CPGPCPTCIAY-YH 1126

Query: 1112 KSIKYEMKFPL--NYKVQPIDDLKLAL 1136
              +K ++   L   +KV+P DDL  AL
Sbjct: 1127 PELKTQVFLSLGDTWKVKPHDDLLKAL 1153


>gi|358449651|ref|ZP_09160133.1| DNA polymerase III subunit alpha [Marinobacter manganoxydans MnI7-9]
 gi|357226173|gb|EHJ04656.1| DNA polymerase III subunit alpha [Marinobacter manganoxydans MnI7-9]
          Length = 1160

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1158 (42%), Positives = 754/1158 (65%), Gaps = 34/1158 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HSEYS++DGL+R+  +I+  A    PA+ +T+ SN+  +++FYK+A   G
Sbjct: 1    MSQTFVHLRVHSEYSMVDGLVRVKPLIKRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+W+ N  E + P R+ LL ++N+GYL L E++S  Y E   +G+  I+ +WL
Sbjct: 61   VKPIIGADLWLENPDEPENPFRITLLARDNDGYLNLTEIISLGYTEGQRFGKPIIQRKWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E     +GLIALSG+ +GD+G A+  G+ ++A   AR W  ++PD++Y+E+QR  +P   
Sbjct: 121  EARP--NGLIALSGSRMGDVGKALMAGKTELARERARYWMDLYPDSYYLELQRTGRPGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VAT+ + FL+  +F AHE R CI E   L + +R ++F+ +Q 
Sbjct: 179  DCLHLSVELAGALGLPVVATNDVHFLEAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EMI+LF DIP AI+NT+EIA+RC++K+  G+  LP +P P  + ++D+    S+ 
Sbjct: 239  LRSADEMIELFSDIPEAIENTVEIARRCSVKVRMGEYFLPNYPIPDGMTMDDYFRKVSEE 298

Query: 301  GLKKRLL-NLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL   L KD   Y  ++  Y KRL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLAKTLSKDDPEYDAKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+  ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI+Y
Sbjct: 359  VGPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
               +YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+PG  +TL  A+
Sbjct: 419  TAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEPG--MTLEKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++EPQL E ++N+EE +++ E+A ++EG+ RN G HAGGV+IAP+K+ +F PLY  +   
Sbjct: 477  EQEPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK--TTNFSLNKLPLNDKD 597
             +++Q+DK D+E+ GL+KFDFLGL TL+I+   +  I     K       +N++PL+D  
Sbjct: 537  SLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRREKKGMQPLDINEIPLDDVP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++LKKA T AVFQLES+GMK++++  +PD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  SFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRK 656

Query: 656  HGEY---FNYPDPR---TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG     F +PD +    K VL  TYG+++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + ++FF +G  + G++   A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 717  KPEEMAKQKQFFLDGCEQNGINTTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA L+  M +T+K+  LV++  +   L +L P+++ S+Y F   +  +G   
Sbjct: 777  AHYPAEFMAAVLTADMQNTDKVVTLVEEC-RNMKLDLLVPDVSRSEYTF--TVNDEG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  I++IV  R  G  + ++FDF +RID K +N+R + +LI  GA D
Sbjct: 831  QIVYGLGAIKGLGEGPIQSIVEGRGDGEPYQDIFDFCRRIDLKKVNKRAMEALIRCGAMD 890

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKN--DDNNNLKEYLNYVKVPSWSKK 944
                 R  L+ASID A++ A +  +   +  + +F    +  +    Y +   +  W +K
Sbjct: 891  KLGASRAQLMASIDKAVQQAGQQSRNESVGMMDMFGEMLEAGDGGDPYEDVAGMREWPEK 950

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSG-IITELKLKTTY 1002
            Q L  EK  LG  L+ H F  YE E+R+F+   +++LKP  S   V+G ++ +  +KT  
Sbjct: 951  QRLKGEKDTLGLYLTGHPFDEYEKEVRRFVRSSIADLKPNKSPQRVAGLVVAQRTMKTRT 1010

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
               +  I +DD S  +E  + ++ + +N+ +L+ +++++V G+V  D +    ++    +
Sbjct: 1011 GSTMCFITLDDRSARIEATLFSEAFFENRELLQSDQVIVVEGQVSHDDYSGQTKMRVSSV 1070

Query: 1063 FDINVARILY--GKKFSVMFNRTFN--ISILKKILLRFKCKNGLPFVLYYCINKSIKYEM 1118
             D+  AR  +  G K ++  ++  N  +  L   L  F+C     ++ Y     S + E+
Sbjct: 1071 MDVASARQQFSRGLKLNLHADQLQNGLLDKLDTTLRPFRCDGSPVWIEYSSPEASTRIEL 1130

Query: 1119 KFPLNYKVQPIDDLKLAL 1136
                +++VQP D+L L L
Sbjct: 1131 G--ESWRVQPDDNLLLEL 1146


>gi|352106667|ref|ZP_08961610.1| DNA polymerase III subunit alpha [Halomonas sp. HAL1]
 gi|350597710|gb|EHA13838.1| DNA polymerase III subunit alpha [Halomonas sp. HAL1]
          Length = 1168

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1169 (43%), Positives = 742/1169 (63%), Gaps = 42/1169 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLHSEYS++DGL+++  ++   A    PALA+TD +NLFG++KFYK+A   G
Sbjct: 1    MTVPFVHLRLHSEYSLVDGLVKLKSLVSTTAERSMPALALTDETNLFGLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW- 119
            +KPIIG D+W+ N  +   P RL LL  N+ GY  L EL+SK +      GRA +  +W 
Sbjct: 61   LKPIIGSDLWLQNPHDESHPYRLTLLAMNDVGYRNLTELISKGWTRGQRQGRAILDKQWV 120

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            LE++   +GLIALSGA  G+IG  + +     A      W   FP+ FY+E+ R  +P  
Sbjct: 121  LEQS---EGLIALSGAREGEIGRHLLSDHEPEARQLLEEWQAAFPERFYLELVRTGRPLE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A     P+VAT+ ++FL++ ++ AHE R  I EG+ L + +R +++T+EQ
Sbjct: 178  EACVHASVKLAIETGTPVVATNDVRFLERDDYWAHETRVAIGEGKALDDPRRERRYTEEQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              K+  EM  LF DIP A++N++ IA+RC++ +  G+  LP+F  P+ +  ++F    S 
Sbjct: 238  YLKSPEEMAALFADIPEALENSVMIAERCSVNVRLGEIFLPEFEIPEGMTQDEFFRKVSH 297

Query: 300  HGLKKRLLNLY------KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWA 353
             GL  RL  L+      +D + YK    RY+ RL+FE+  II+M F GYFLIV DFIQWA
Sbjct: 298  DGLTDRLDFLFPAERYPRDSDEYKAIDQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWA 357

Query: 354  KNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGR 413
            K+NS+PVGPGRGSGA SLVAY+  ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E R
Sbjct: 358  KDNSVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKR 417

Query: 414  DRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLI 473
            D+VI+YV +RYG++AVSQIVTFGTMAAK  +RDV R     YS  D +SKLIPF+ G  +
Sbjct: 418  DKVIEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVG--M 475

Query: 474  TLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY 533
            TL+ AI++EP L E I N+EE  ++ E+A ++EG  R  G HAGGV+IAP+KL +F PL 
Sbjct: 476  TLAKAIEQEPALKEFIGNDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLL 535

Query: 534  KQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL--NKL 591
              E  +G++ Q+DK+DIEE GL+KFDFLGL TL+I+D  +  + K+ +      L    +
Sbjct: 536  CDEDGSGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGPLKIESI 595

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIK 649
            PL+D  T+ +LK+A T AVFQLES+GMK ++K   PD  +++IAL++L+RPGP+   ++ 
Sbjct: 596  PLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVD 655

Query: 650  NFCRRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLR 703
            +F  RKHG    +YP P       K VL+ TYGI++YQEQVMQIAQ++ GYSLGQAD+LR
Sbjct: 656  DFINRKHGRAEVSYPHPDYQHELLKPVLAPTYGIILYQEQVMQIAQVMAGYSLGQADMLR 715

Query: 704  RAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763
            RA+GKKK  EM + R  F  G    G+ K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY
Sbjct: 716  RAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSY 775

Query: 764  YTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE 823
             TA+LK HY   FMAA +S  MD+ +K+  L+++  +   L++ PPN+N+  Y F   ++
Sbjct: 776  QTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEEC-RNLKLTVTPPNVNVGGYKF--TVD 832

Query: 824  SDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLI 882
            +D    ++ YGLGAI+G G+  I AIV  R+  G F ++FDF +R+D K +N+R + +LI
Sbjct: 833  TDA---RVVYGLGAIRGVGEGPIGAIVEAREADGPFKDIFDFCRRMDPKRMNKRTLEALI 889

Query: 883  NSGAFDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKN----DDNNNLKEYLNYV 936
             SGA D     R +L A+++ ALK A +  T + +  L +F +     D+++   Y  Y+
Sbjct: 890  RSGALDTIGPNRAVLFAAMEDALKAAAQNHTNQNLGMLDMFGDAFVEADDSDSNVYAEYI 949

Query: 937  KVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITE 995
                W+ ++ L  EK  LG  L+ H    YE E+++F+   +S+LKP+     V+G++  
Sbjct: 950  NAREWTDRERLSGEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSRDPQRVAGLVVG 1009

Query: 996  LKLKTTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
            ++   + RG  +  I +DD +  +E  +  +L+E+ +  ++ +++LIV G+V  D F   
Sbjct: 1010 VRTMKSKRGDTMAFITLDDRTGRIEASLFGELFEQLRGQIEADQVLIVEGEVSSDEFSGG 1069

Query: 1055 IRINAEKIFDINVARILYGKKFSVMFNR-TFN---ISILKKILLRFKCKNGLPFVLYYCI 1110
            +R+  + +  +  ARI YG+   +       N   I  L+  L  ++ + GLP  L Y  
Sbjct: 1070 LRLRGKDVTPMVTARIRYGQAVELALEAGEINGRLIETLRDSLTPYRDQEGLPVRLQYRH 1129

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
              ++ + ++    +KV P DDL LAL ++
Sbjct: 1130 PAAVAW-LELADEWKVAPSDDLLLALRDV 1157


>gi|359394077|ref|ZP_09187130.1| DNA polymerase III subunit alpha [Halomonas boliviensis LC1]
 gi|357971324|gb|EHJ93769.1| DNA polymerase III subunit alpha [Halomonas boliviensis LC1]
          Length = 1171

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1172 (43%), Positives = 741/1172 (63%), Gaps = 45/1172 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLHSEYS++DGL+++  ++   A    PALA+TD +NLFG++KFYK+A   G
Sbjct: 1    MTVPFVHLRLHSEYSLVDGLVKLKSLVSTTAERAMPALALTDETNLFGLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW- 119
            +KPIIG D+W+ N  +   P RL LL  N+ GY  L EL+SK +      GRA +  +W 
Sbjct: 61   LKPIIGSDLWLQNPHDEAHPYRLTLLAMNDVGYRNLTELISKGWTHGQRQGRAILDKQWV 120

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            LE+N   +GLIALSGA  G+IG  + +     A    + W   FP+ FY+E+ R  +P  
Sbjct: 121  LEQN---EGLIALSGAREGEIGRHLLSDHEQDARVLLQEWQAAFPERFYLELVRTGRPLE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A     P+VAT+ ++FL++ ++ AHE R  I EG+ L + +R +++T+EQ
Sbjct: 178  EACVHASVKLAIETGTPVVATNDVRFLERDDYWAHETRVAIGEGKALDDPRRERRYTEEQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              K+  EM  LF DIP A++N++ IA+RC++ +  G+  LP+F  P+ +  ++F    S 
Sbjct: 238  YLKSPDEMAALFSDIPEALENSVMIAERCSVNVRLGEIFLPEFGIPEGMTQDEFFRKVSH 297

Query: 300  HGLKKRLLNLY------KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWA 353
             GL +RL  L+      +D E Y+    RY+ RL+FE+  II+M F GYFLIV DFIQWA
Sbjct: 298  DGLTERLDFLFPAERYPRDSEEYQTIDQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWA 357

Query: 354  KNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGR 413
            K+NS+PVGPGRGSGA SLVAY+  ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E R
Sbjct: 358  KDNSVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKR 417

Query: 414  DRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLI 473
            D+VI+YV +RYG++AVSQIVTFGTMAAK  +RDV R     YS  D +SKLIPF+ G  +
Sbjct: 418  DKVIEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVG--M 475

Query: 474  TLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY 533
            TL+ AI++EP L E I N+EE  ++ E+A ++EG  R  G HAGGV+IAP+KL +F PL 
Sbjct: 476  TLAKAIEQEPALKEFIGNDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLL 535

Query: 534  KQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KL 591
              E  +G++ Q+DK+DIEE GL+KFDFLGL TL+I+D  +  + K+ +      LN   +
Sbjct: 536  CDEDGSGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGPLNIESI 595

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIK 649
            PL+D  T+ +LK+A T AVFQLES+GMK ++K   PD  +++IAL++L+RPGP+   ++ 
Sbjct: 596  PLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVD 655

Query: 650  NFCRRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLR 703
            +F  RKHG    +YP P       K VL+ TYGI++YQEQVMQIAQ++ GYSLGQAD+LR
Sbjct: 656  DFINRKHGRAEVSYPHPDYQHELLKPVLAPTYGIILYQEQVMQIAQVMAGYSLGQADMLR 715

Query: 704  RAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763
            RA+GKKK  EM + R  F  G    G+ K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY
Sbjct: 716  RAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSY 775

Query: 764  YTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE 823
             TA+LK+HY   FMAA +S  MD+ +K+  L+++  +   L++ PPN+N+  Y F   ++
Sbjct: 776  QTAWLKSHYPGPFMAAVMSTEMDNLDKVVPLIEEC-RNLRLTVTPPNVNVGGYKF--TVD 832

Query: 824  SDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLI 882
            +D    ++ YGLGAI+G G+  I AIV  R+  G F ++FDF +RID K +N+R + +LI
Sbjct: 833  TDA---RVVYGLGAIRGVGEGPIGAIVEAREADGPFKDIFDFCRRIDPKRMNKRTLEALI 889

Query: 883  NSGAFDCFNEKRYMLVASIDVALKNAEKTKK---------FINQLSLFKNDDNNNLKEYL 933
             SGA D     R +L A+++ ALK A +            F +  S  +     +   Y 
Sbjct: 890  RSGALDTIGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFSADEEAGEGDSNVYA 949

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGI 992
             Y+    W+ ++ L  EK  LG  L+ H    YE E+++F+   +S+LKP+     V+G+
Sbjct: 950  EYINAREWTDRERLSGEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSRDPQRVAGL 1009

Query: 993  ITELKLKTTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            +  ++   + RG  +  I +DD +  +E  +  +L+E+ +  ++ +++LIV G+V  D F
Sbjct: 1010 VVGVRTMKSKRGDTMAFITLDDRTGRIEASLFGELFEQLRGQIEADQVLIVEGEVSSDEF 1069

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFNR-TFN---ISILKKILLRFKCKNGLPFVLY 1107
               +R+  + +  +  ARI YG+   +  +    N   I  L+  L  ++ + GLP  L 
Sbjct: 1070 SGGLRLRGKDVTPMVTARIRYGQAVELALDAGQINGRLIETLRDSLTPYRDQEGLPVRLQ 1129

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
            Y    ++ + ++    +KV P DDL LAL ++
Sbjct: 1130 YRHPAAVAW-LELADEWKVAPSDDLLLALRDV 1160


>gi|387814781|ref|YP_005430268.1| DNA polymerase III subunit alpha [Marinobacter hydrocarbonoclasticus
            ATCC 49840]
 gi|381339798|emb|CCG95845.1| DNA polymerase III alpha subunit [Marinobacter hydrocarbonoclasticus
            ATCC 49840]
          Length = 1162

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1161 (42%), Positives = 745/1161 (64%), Gaps = 34/1161 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HSEYS++DGL+R+  +I   A    PA+ +T+ SN+  +++FYK+A   G
Sbjct: 3    MANTFVHLRVHSEYSMVDGLVRVKPLISRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAG 62

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+W+ N  E + P RL LL ++N+GYL L E++S+ Y E   YG+  ++  WL
Sbjct: 63   VKPIIGADIWLENPDEPETPFRLTLLARDNDGYLNLTEIISQGYTEGQRYGKPIVQKTWL 122

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E      GLI LSGA +GD+G A+  G+ ++A   A  W  ++PD++Y+E+QR  +    
Sbjct: 123  ESRA--KGLIVLSGAKMGDVGKALLAGKPELARERADYWRNLYPDSYYLELQRTGRAGDE 180

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+ + LP+VAT+ + FL+  +F AHE R CI E   L + +R ++F+ +Q 
Sbjct: 181  DCLHMSVELAAELGLPVVATNDVHFLEADDFEAHEARVCIGESRTLDDPRRDRRFSDQQY 240

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EMI+LF DIP A++NT+EIA+RC++K+  G+  LP +P P  + ++++    S+ 
Sbjct: 241  LRSAEEMIELFSDIPEAVENTVEIARRCSVKVRMGEYFLPNYPIPDGMTMDEYFRHVSEE 300

Query: 301  GLKKRLL-NLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL+ RL   L KD   Y  ++  Y KRL+FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 301  GLEARLAKTLSKDDPEYDQKREEYYKRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 360

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI Y
Sbjct: 361  VGPGRGSGAGSLVAYALLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDY 420

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
               +YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SKLIPF+ G  +TL+ AI
Sbjct: 421  TAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVG--MTLNKAI 478

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++EPQL E ++ +EE +++ E+A ++EG+ RN G HAGGV+IAP+K+ +F PLY  +   
Sbjct: 479  EQEPQLKEFLEQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGG 538

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
             +++Q+DK D+E+ GL+KFDFLGL TL+I+   +  I  ++         ++ +PL+DK 
Sbjct: 539  SLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRRQQRGEGELDISAIPLDDKP 598

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++LKKA T AVFQLES+GMK++++  +PD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 599  SFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRK 658

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG +  +YP P       K VL  TYG+++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 659  HGRQPLSYPHPDYQYQGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 718

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + +  F +G    G+ K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 719  KPEEMAKQKAIFLDGCENNGIDKTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 778

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA L+  M +T+K+  LV++  +   L +L P+++ S Y F   +   G   
Sbjct: 779  AHYPAEFMAAVLTADMQNTDKVVTLVEEC-RNMKLDLLVPDVSRSAYTF--TVNDQG--- 832

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            +I YGLGAIKG G+  IE+IV   K G F ++FDF +R+D K +N+R + +LI SGA D 
Sbjct: 833  QIVYGLGAIKGLGEGPIESIVEAAKAGPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDK 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK-----FINQLSLFKNDDNNNLKEYLNYVKVPSWSKK 944
                R  L+ASID A++ A++  +      ++          ++   Y +   V  W +K
Sbjct: 893  LGADRAKLMASIDKAIQQADQQSRNDAAGMVDMFGEMLEGGGDDEDTYADVAHVREWPEK 952

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSG-IITELKLKTTY 1002
            + L  EK  LG  L+ H F  YE E+R+F+   +++LKP  S   V+G ++ +  +KT  
Sbjct: 953  ERLKGEKDTLGLYLTGHPFDEYEREVRRFVRCSIADLKPNKSPQRVAGLVVAQRTMKTKT 1012

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
               +  I +DD S  +E  + ++ + +N+ +L+ +++++V G+V  D +   +++    +
Sbjct: 1013 GSTMCFITLDDRSARIEATLFSEAFFENRELLQSDQVIVVEGQVSHDDYSGQMKMRVSSV 1072

Query: 1063 FDINVARILY--GKKFSVMFNRTFN--ISILKKILLRFKCKNGLPFVLYYCINKSIKYEM 1118
             D+  AR  +  G K ++   +  N  +  L   L  F+ +    ++ Y     S + E+
Sbjct: 1073 MDVATARQQFSRGIKLALRSEQLQNGLLDKLDDTLRPFRSEGSPVWIEYRSAEASTRIEL 1132

Query: 1119 KFPLNYKVQPIDDLKLALINL 1139
                +++VQP D L   L +L
Sbjct: 1133 G--ESWRVQPDDTLLFELKHL 1151


>gi|335043143|ref|ZP_08536170.1| DNA polymerase III, alpha subunit [Methylophaga aminisulfidivorans
            MP]
 gi|333789757|gb|EGL55639.1| DNA polymerase III, alpha subunit [Methylophaga aminisulfidivorans
            MP]
          Length = 1165

 Score =  984 bits (2543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1163 (43%), Positives = 739/1163 (63%), Gaps = 40/1163 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL LH++YS++DGL+R+  +++  A+   PA+AITD  NLF  +K + +A   G
Sbjct: 1    MPKSFVHLHLHTDYSLVDGLVRVKPLVKHVADAGMPAIAITDHHNLFAAVKLFNAAMQAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI+G D+ + +  + K+ +R +LL  N  G+  L  LLSKAY+E  + G   +  +WL
Sbjct: 61   VKPILGADLRLRDPSDAKQSTRFVLLCMNLEGFHNLSRLLSKAYMEGQHLGVPMLEADWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     DGLI LSG   G +G A+ N + D  E     W  +FPD  Y+E+ R  + +  
Sbjct: 121  QGQT--DGLICLSGGREGILGKALLNHQKDEIEQQLAFWQPLFPDRLYMELIRTGREDEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I+  I +A+  +LP+VAT+ ++FL   +F AHE + CI EG  L + +R + +++ Q 
Sbjct: 179  RFIRAAIALAAEKDLPVVATNDVRFLTPDQFEAHEAKVCIHEGRQLDDPRRPRNYSEHQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF DIP AI+NT+EIAKRCNL+L  G+  LP FP P+ + I  F   +S  
Sbjct: 239  LRSAEEMTALFEDIPEAIENTVEIAKRCNLQLTLGEHYLPDFPVPEGMTIEQFFSEESFK 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +RL  L+ D    +  K RY++RLQ E++ I +M F GYFLIV+DFIQWAKNN +PV
Sbjct: 299  GLAERLEVLFPDEADREANKPRYEERLQVELDVINQMGFPGYFLIVADFIQWAKNNDVPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+S+PDFD+DFC +GRDRVI+YV
Sbjct: 359  GPGRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSLPDFDVDFCMDGRDRVIEYV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG+D VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KL+PF+    +TLS A++
Sbjct: 419  SQHYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFE--LKMTLSKAME 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +EP L ER  NEEEV+ LI+LA Q+EG+ RNVG HAGGV+IAP  L  + P+Y +    G
Sbjct: 477  QEPLLKERYDNEEEVKTLIDLALQLEGLTRNVGKHAGGVVIAPKVLTEYTPIYSEHNGAG 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK--TTNFSLNKLPLNDKDT 598
            ++SQ+DKDD+E +GL+KFDFLGL TL+++D  +  ++ +  K       +  LPL+DK T
Sbjct: 537  LVSQFDKDDVESVGLVKFDFLGLKTLTVIDWAMKNVRSLLPKEEADKIDIANLPLDDKPT 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            Y LLK+  T AVFQLES+GMK ++K  +PD FE+I+AL++L+RPGP+   ++ +F  RKH
Sbjct: 597  YALLKRCETTAVFQLESRGMKELVKRLQPDTFEDIVALVALFRPGPLQSGMVDDFVNRKH 656

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G    +YP P  + VL  TYG++VYQEQVMQIAQIL  YSLG AD+LRRA+GKKK  EM 
Sbjct: 657  GRAKVDYPHPDLEPVLKPTYGVIVYQEQVMQIAQILANYSLGGADMLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R  F  GA K G+ + +A  IF+ +EKFA YGFNKSH+ AYAL++Y TA+LK HY + 
Sbjct: 717  KQRLLFLEGAAKRGIEEKEAGPIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLKAHYPAA 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA LS  MD+T+K+  L+ D  +   L +LPP++N SK  F   +E +   + IRYGL
Sbjct: 777  FMAAVLSADMDNTDKVVGLI-DECRDMKLKVLPPDVNHSKIKF--TVEDE---RTIRYGL 830

Query: 836  GAIKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+S +  IV+ER+ G  F++L+DF +R+D + INRR++ SL+ +GA D     R
Sbjct: 831  GAIKGVGESALAGIVSEREQGDAFSSLYDFCRRVDMRKINRRVMESLVKAGAMDSLGGHR 890

Query: 895  YMLVASIDVALKNAEKTKK----FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
              + AS+  A++ A++ ++      N L     +  N   E L       W+++  L  E
Sbjct: 891  ASIEASLTKAMQIADQHRRNKDSGQNDLFGLSPEVGNGQDEPLE--PAAEWAEEHLLQAE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---------CTVSGIITELK-LKT 1000
            K  LG  LS H    Y+ E+ +FIP  ++EL    S            +G++  ++ +K+
Sbjct: 949  KDTLGLYLSGHPIDRYQQELAEFIPKRINELDAPESKGYQRNEKPVLTAGLVVAIRTMKS 1008

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
               G++  I +DD S  +EV +   +Y++ ++ ++ ++L+++ GK+ +D F   +   AE
Sbjct: 1009 KNGGRMAFITLDDQSGRLEVRVFADVYDQYQSFIQPDKLVVIQGKIGQDNFTGGLAATAE 1068

Query: 1061 KIFDINVARILYGKKFSVMFNR----TFNISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
            K+FDI  AR  +G    +  +     +  +  +K +L  FK    L   L Y  N+    
Sbjct: 1069 KVFDITGAREAFGHSLQINIDNKEMASQWVEQIKNMLTPFKG-GALSLELLYQ-NEQAST 1126

Query: 1117 EMKFPLNYKVQPIDDL--KLALI 1137
             +    +++V P D L  +LA++
Sbjct: 1127 VIMLGDDWQVTPSDTLMSQLAML 1149


>gi|120553848|ref|YP_958199.1| DNA polymerase III subunit alpha [Marinobacter aquaeolei VT8]
 gi|120323697|gb|ABM18012.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
          Length = 1162

 Score =  983 bits (2541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1161 (42%), Positives = 744/1161 (64%), Gaps = 34/1161 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HSEYS++DGL+R+  +I   A    PA+ +T+ SN+  +++FYK+A   G
Sbjct: 3    MANTFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAG 62

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+W+ N  E + P RL LL ++N+GYL L E++S  Y E   YG+  ++  WL
Sbjct: 63   VKPIIGADIWLENPDEPENPFRLTLLARDNDGYLNLTEVISLGYTEGQRYGKPIVQKSWL 122

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E      GLI LSGA +GD+G A+  G+ ++A   A  W  ++PD++Y+E+QR  +    
Sbjct: 123  ESRA--KGLIVLSGAKMGDVGKALLAGKPELARERADYWRNLYPDSYYLELQRTGRAGDE 180

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+ + LP+VAT+ + FL+  +F AHE R CI E   L + +R ++F+ +Q 
Sbjct: 181  DCLHMSVELAAELGLPVVATNDVHFLEADDFEAHEARVCIGESRTLDDPRRDRRFSDQQY 240

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EMI+LF DIP A++NT+EIA+RC++K+  G+  LP +P P  + ++++    S+ 
Sbjct: 241  LRSAEEMIELFSDIPEAVENTVEIARRCSVKVRMGEYFLPNYPIPDGMTMDEYFRHVSEE 300

Query: 301  GLKKRLL-NLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL+ RL   L KD   Y  ++  Y KRL+FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 301  GLEARLAKTLSKDDPEYDQKREEYYKRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 360

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI Y
Sbjct: 361  VGPGRGSGAGSLVAYALLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDY 420

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
               +YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SKLIPF+ G  +TL+ AI
Sbjct: 421  TAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVG--MTLNKAI 478

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++EPQL E ++ +EE +++ E+A ++EG+ RN G HAGGV+IAP+K+ +F PLY  +   
Sbjct: 479  EQEPQLKEFLEQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGG 538

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
             +++Q+DK D+E+ GL+KFDFLGL TL+I+   +  I  ++         ++ +PL+DK 
Sbjct: 539  SLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRRQQRGEGELDISAIPLDDKP 598

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++LKKA T AVFQLES+GMK++++  +PD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 599  SFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRK 658

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG +  +YP P       K VL  TYG+++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 659  HGRQPLSYPHPDYQYQGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 718

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + +  F +G    G+ K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 719  KPEEMAKQKAIFLDGCENNGIDKTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 778

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA L+  M +T+K+  LV++  +   L +L P+++ S Y F   +   G   
Sbjct: 779  AHYPAEFMAAVLTADMQNTDKVVTLVEEC-RNMKLDLLVPDVSRSAYTF--TVNDQG--- 832

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            +I YGLGAIKG G+  IE+IV   K G F ++FDF +R+D K +N+R + +LI SGA D 
Sbjct: 833  QIVYGLGAIKGLGEGPIESIVEAAKAGPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDK 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK-----FINQLSLFKNDDNNNLKEYLNYVKVPSWSKK 944
                R  L+ASID A++ A++  +      ++          ++   Y +   V  W +K
Sbjct: 893  LGADRAKLMASIDKAIQQADQQSRNDAAGMVDMFGEMLEGGGDDEDTYADVAHVREWPEK 952

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSG-IITELKLKTTY 1002
            + L  EK  LG  L+ H F  YE E+R+F+   +++LKP  S   V+G ++ +  +KT  
Sbjct: 953  ERLKGEKDTLGLYLTGHPFDEYEREVRRFVRCSIADLKPNKSPQRVAGLVVAQRTMKTKT 1012

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
               +  I +DD S  +E  + ++ + +N+ +L+ +++++V G+V  D +   +++    +
Sbjct: 1013 GSTMCFITLDDRSARIEATLFSEAFFENRELLQSDQVIVVEGQVSHDDYSGQMKMRVSSV 1072

Query: 1063 FDINVARILY--GKKFSVMFNRTFN--ISILKKILLRFKCKNGLPFVLYYCINKSIKYEM 1118
             D+  AR  +  G K ++   +  N  +  L   L  F+ +    ++ Y     S + E+
Sbjct: 1073 MDVATARQQFSRGIKLALRSEQLQNGLLDKLDDTLRPFRSEGSPVWIEYRSAEASTRIEL 1132

Query: 1119 KFPLNYKVQPIDDLKLALINL 1139
                +++VQP D L   L +L
Sbjct: 1133 G--ESWRVQPDDTLLFELKHL 1151


>gi|254491862|ref|ZP_05105041.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga
            thiooxidans DMS010]
 gi|224463340|gb|EEF79610.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga
            thiooxydans DMS010]
          Length = 1161

 Score =  983 bits (2540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1154 (44%), Positives = 738/1154 (63%), Gaps = 34/1154 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  QF+HL LH++YS+IDGL+R+  +++A A    PA+AITD  NLF  +K + +A   G
Sbjct: 1    MSKQFVHLHLHTDYSLIDGLVRVKPLVKAVAEAGMPAVAITDQHNLFAAVKLFNAAMQAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI+G D+ + +  + K  +R +LL  N  G+  L  LLS+AY+E    G   I  +WL
Sbjct: 61   VKPILGADLRLKDPSDAKSSTRFVLLCMNLEGFHNLSRLLSRAYMEGQQLGVPMIEADWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E     DGLI LSG   G +G A+ N + D  +     W ++FPD FY+E+ R  + +  
Sbjct: 121  EGQS--DGLICLSGGREGVLGKALLNHQKDEIDQQLNFWQQLFPDRFYLELIRTGREDEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              ++  + +A +  +P+VA++ ++FL+   F AHE + CI +G  L + +R + +++ Q 
Sbjct: 179  RFLRLAVALAGDRQIPVVASNDVRFLQPQHFEAHEAKVCIHDGRQLDDPRRPRHYSEHQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  +MI LF DIP AI+NT+EIAKRCNL+L  G+  LP FP P+ + I++F   +S  
Sbjct: 239  LRSAEDMIALFDDIPEAIENTVEIAKRCNLQLSLGEHYLPDFPVPEGMTIDEFFSEESFK 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +RL  L+ D    +  K RY++RLQ E++ I  M F GYFLIV+DFIQWAKNN++PV
Sbjct: 299  GLAERLEVLFPDSTQREANKDRYEERLQIELDVINSMGFPGYFLIVADFIQWAKNNAVPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+S+PDFD+DFC +GRDRVI YV
Sbjct: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSLPDFDVDFCMDGRDRVIDYV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG+D VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KL+PF+    +TL+ A++
Sbjct: 419  SQHYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFE--LKMTLTKALE 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +EP L ER   EEEV+ LI+LA Q+EG+ RNVG HAGGV+IAP  L  + PLY +    G
Sbjct: 477  QEPLLKERYNKEEEVKTLIDLALQLEGLTRNVGKHAGGVVIAPKVLTEYTPLYCEHNGAG 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDKDT 598
            ++SQ+DKDD+E +GL+KFDFLGL TL+++D  +  ++ +    +     +  LPL+DK T
Sbjct: 537  LVSQFDKDDVESVGLVKFDFLGLKTLTVIDWAMNNVRTLLPAEEADKIDITNLPLDDKPT 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LLK+  T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ +F  RKH
Sbjct: 597  FDLLKRCETTAVFQLESRGMKELVKRLQPDNFEDIIALVALFRPGPLQSGMVDDFVNRKH 656

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G    +YP    + VLS TYG++VYQEQVMQIAQIL GYSLG AD+LRRA+GKKK  EM 
Sbjct: 657  GRAKVDYPHQDLEPVLSPTYGVIVYQEQVMQIAQILAGYSLGGADMLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA    + + +A  IF+ +EKFA YGFNKSH+ AYAL++Y TA+LK HY S 
Sbjct: 717  KQRQIFLEGAAGRDIGEKEAGPIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLKAHYPSA 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA LS  MD+T+K+  L+ D  +   L++ PP++N SK  F   +E DG    IRYGL
Sbjct: 777  FMAAVLSADMDNTDKVVGLI-DECRDMKLTVQPPDVNHSKIKF--TVE-DG--TTIRYGL 830

Query: 836  GAIKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+S +  IV+ER+ G  F +L+DF +R+D + INRR++ SL+ +GA D     R
Sbjct: 831  GAIKGVGESALAGIVSEREQGEAFESLYDFCRRVDMRKINRRVMESLVKAGALDSLGGHR 890

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L AS+  A++ A++ +  K   Q  LF    +++  +         W+++Q L  EK+
Sbjct: 891  ASLEASLSKAMQIADQHRRDKDSGQNDLFGLTPDSDSADDEPLEIAAEWAEQQLLQSEKE 950

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---------CTVSGIITELK-LKTTY 1002
             LG  LS H    YE E+ +FIP  ++EL    S            +G+I  ++ +K+  
Sbjct: 951  TLGLYLSGHPIDRYEAELAEFIPKKINELDAPESKGYQRNEKPMLTAGLIVAIRTMKSKN 1010

Query: 1003 RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
             G++  I +DD S  +EV +   +Y++ ++ ++ ++L+++ GK+ +D F   +   AEK+
Sbjct: 1011 GGRMAFITLDDQSARLEVRVFADVYDQYQSFIQPDKLVVIQGKIGQDNFTGGLAGTAEKV 1070

Query: 1063 FDINVARILYGKKFSVMFNRTFN----ISILKKILLRFKCKNGLPFVLYYCINKSIKYEM 1118
            FDI  AR  +G+   +    +      +  LK  L  F+    L   L Y  N++ K  +
Sbjct: 1071 FDITGAREAFGQALQINLENSEQAQQWVEQLKTTLSPFRG-GALGLELNYQ-NQTAKARI 1128

Query: 1119 KFPLNYKVQPIDDL 1132
                 ++V P D L
Sbjct: 1129 NLGDEWQVTPSDTL 1142


>gi|357406446|ref|YP_004918370.1| DNA polymerase III subunit alpha [Methylomicrobium alcaliphilum 20Z]
 gi|351719111|emb|CCE24785.1| DNA polymerase III subunit alpha [Methylomicrobium alcaliphilum 20Z]
          Length = 1164

 Score =  982 bits (2539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1165 (43%), Positives = 751/1165 (64%), Gaps = 38/1165 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HLRLH+E+S++DG++RI  +I+A A+   PA+A+T+ SNLF ++KFY++A  +G
Sbjct: 1    MQPSFVHLRLHTEFSLVDGIVRIKPLIKALADMNMPAVAVTEQSNLFSLVKFYRAALGQG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKP+ G DV I N  +   P  L LLVKN NGY  L EL+SK+Y E  + G   ++ EW+
Sbjct: 61   IKPVSGADVHIFNPDDPSSPYCLTLLVKNLNGYTTLTELISKSYQEGQHQGVPMVQREWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
              N   +GLIALSGA  GDIG A+     D A+  A  WS +F D+FY+E+QR  +    
Sbjct: 121  ADN--HNGLIALSGAMSGDIGRALLAENVDEAKRLAEGWSHLFEDSFYLELQRVGKAEEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   +++A  ++LP+VAT+ ++F++  +F AHEVR CI +G +L + +R K +T +Q 
Sbjct: 179  RYVAAAVDLAQQMDLPVVATNDVRFIRPEDFDAHEVRVCIHQGRVLDDNRRPKDYTNQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM +LF DIP A++N++EIAKRCNL+L  G+  LP FP P+ + I+D+LI  S+ 
Sbjct: 239  LRSSEEMQELFADIPEALENSVEIAKRCNLELTLGENYLPDFPVPEGMTIDDYLIEVSRQ 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++R           + E  R Y  RL+ E++ I +M F GYFLIV+DFIQWAKN++IP
Sbjct: 299  GLEERFQQHPAFGSGSEEENRRVYYDRLETELKVITQMGFPGYFLIVADFIQWAKNSAIP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DP+ ++LLFERFLNP R+SMPDFD+DFC + RD VI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   YG+D V+QI+T+G+MAAK  +RDVGRVL   Y F D ++KLIPF+ G  +TL+ A+
Sbjct: 419  VARHYGRDHVAQIITYGSMAAKAVVRDVGRVLGFSYGFVDRLAKLIPFEIG--MTLTKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++ P L +  + EEEV+ LI++AK +EG+ RN G HAGGV+I+P+KL +F PLY ++G  
Sbjct: 477  QDSPDLKQLYETEEEVKTLIDMAKSLEGVSRNAGKHAGGVVISPTKLTDFTPLYCEQGGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
             +++Q+DKDD+E +GL+KFDFLGL TL+I+D  +  I  KK         ++ +P +D  
Sbjct: 537  NLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALETINRKKQQIGEAIVDISAIPRDDSP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            +Y LLKKA T AVFQLES+GMK ++K+ KPD F++IIAL++L+RPGP++  ++ ++   K
Sbjct: 597  SYELLKKAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLESGMVDDYINVK 656

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG    Y  P  + +L  T G+++YQEQVMQIA+ L GY+LG AD+LRRA+GKKK  EM 
Sbjct: 657  HGAKAEYAHPMLEPILKSTNGVILYQEQVMQIARELAGYTLGGADMLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA+   + +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY + 
Sbjct: 717  KQREIFTEGAVANNIEESVATYIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYPAE 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA LS  MD+T+K+ +L+++  +   L+I PP++N S Y F   +   G   +I YG+
Sbjct: 777  FMAAVLSSDMDNTDKVVVLIEEC-REMKLAICPPDLNESNYRF--TVNDKG---QIVYGI 830

Query: 836  GAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+S IE ++ ER+  G F  L+D  KR+D + +NRR++ +LI +GAFD  +  R
Sbjct: 831  GAIKGVGESAIEDLLKEREANGSFAGLYDLCKRVDLRKVNRRVLEALIRAGAFDRIDANR 890

Query: 895  YMLVASIDVALKNAEKTKKF--INQLSLFK---NDDNNNLKEYLNYVKVPSWSKKQELIE 949
               +A + +AL+ AE+  K     Q  LF     D+++ ++E +   +   W++ + L  
Sbjct: 891  AAHLAELPIALRVAEQHVKMAQTGQNDLFGLGMPDEDDKIQEDVYTTQAEPWTESERLAA 950

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL-------KPTYSCTVSGIITELKLKTTY 1002
            EK+ LG  L+ H    YE+E++  +   ++++       +       +G++ EL+ +   
Sbjct: 951  EKQTLGLFLTGHPITQYESELKHIVHGKIAKILGDVERTRGKMEARTAGLVVELRTRQNK 1010

Query: 1003 RGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
             GK +    +DD S  +E+ I    YE+ +++L ++ LL+  G V  D F   +R+  +K
Sbjct: 1011 NGKTMGFATLDDRSGRLELAIFGDSYERYRDLLSKDALLVAEGGVAIDDFSGMLRLTVDK 1070

Query: 1062 IFDINVARILYGKKFSVMFNRTFN-------ISILKKILLRFKCKNGLPFVLYYCINKSI 1114
            ++ I  AR  Y +  ++ +  T         +  L + L  FK     P VL Y  + + 
Sbjct: 1071 LYSIEDARNQYARCLALQWANTDEQSDAKSFVDKLDETLQPFK-GGSCPIVLAYR-SATA 1128

Query: 1115 KYEMKFPLNYKVQPIDDLKLALINL 1139
            K  ++F   ++V P D+L L L  L
Sbjct: 1129 KSSLQFGDEWRVHPSDELVLRLKRL 1153


>gi|406943715|gb|EKD75650.1| hypothetical protein ACD_44C00069G0009 [uncultured bacterium]
          Length = 1138

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1147 (45%), Positives = 741/1147 (64%), Gaps = 33/1147 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            FIHLR H+E+S+ID  +R+ D+I+AA     PALAITD  NLF  +KFYK+A   GIKP+
Sbjct: 3    FIHLRTHTEFSLIDSTIRVEDLIDAAVQTKIPALAITDHMNLFAAVKFYKAALEAGIKPL 62

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G D  + N  +  +P  L LL +N  GY  L +L+SKAY EN      +++  W E   
Sbjct: 63   LGVDALLENTSDPLQPFHLTLLCQNTQGYKNLTQLISKAYTEN-KTQTPQLQYAWFENRT 121

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              DGLIALSG   GDIG+A+ + +   A+     W  +FPD FY+E+QR  +P+    I+
Sbjct: 122  --DGLIALSGGREGDIGLALLSKQLARADKLLTHWLTLFPDRFYLELQRTGRPSEEIYIR 179

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              +++A   NLP+VAT+ ++FLK  +  AHE R CI  G  L + +R + +T EQ FKT 
Sbjct: 180  GALSLAKKFNLPVVATNDLRFLKPEDAEAHEARVCIHAGWTLQDHRRPRPYTPEQYFKTA 239

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM  LF DIPSAI+NT+EIAKRC+  +   K  LP F TP+ ++  DFLI +S+ GL+K
Sbjct: 240  EEMKTLFSDIPSAIENTVEIAKRCSPTITLDKVFLPPFETPEGLSTEDFLIKESQEGLQK 299

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL+ L  + E  K     Y  RL+ E++ I K+ F+GYFLIV+DFI+WAKN  IPVGPGR
Sbjct: 300  RLIQLQCNEETQK----PYTTRLEEELKVICKIGFAGYFLIVADFIRWAKNQDIPVGPGR 355

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L+IT+IDPL Y LLFERFLNP R+SMPDFDIDFC +GRDRVI YV  RY
Sbjct: 356  GSGAGSLVAYALNITNIDPLPYGLLFERFLNPERVSMPDFDIDFCMDGRDRVIDYVASRY 415

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+  VSQI+TFGTMAAK  IRDVGRVL   Y F D I+KLIPF+ G  +TL  A+++EP 
Sbjct: 416  GQHRVSQIITFGTMAAKAVIRDVGRVLAHPYGFVDKIAKLIPFELG--MTLEKALEQEPL 473

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
            L  R   EEEV+ LI+LA ++EG+ RN G HAGGV++ P+ L +F PLY + G T  ++Q
Sbjct: 474  LKTRYLQEEEVKTLIDLALKLEGLTRNAGKHAGGVVVTPTTLTDFTPLYCEPGSTHTVTQ 533

Query: 545  YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKK 604
            +DKDD+E IGL+KFDFLGL TL+I+  T+  I   + K  +  ++K+PL D+ T++LLK 
Sbjct: 534  FDKDDVEAIGLVKFDFLGLRTLTIIHHTLQNIH--HYKKLSLDISKIPLQDEATFSLLKS 591

Query: 605  ANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGEY-FN 661
              T AVFQLES+GMK++++  +PD FEEIIAL++L+RPGP+   ++ +F  RKHG     
Sbjct: 592  CATTAVFQLESRGMKDLIRRLQPDCFEEIIALVALFRPGPLQSGMVDDFINRKHGRANVT 651

Query: 662  YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
            Y  P  + +L +TYG+++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK+ EM + R+ F
Sbjct: 652  YSHPALELILKQTYGVILYQEQVMQIAQVLAGYTLGSADLLRRAMGKKKSGEMAKQREIF 711

Query: 722  QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
            + GAIK  + +  A +IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LKTHY++ FMAA L
Sbjct: 712  KKGAIKNNVPEKTAQQIFDLMEKFAGYGFNKSHSAAYALISYQTAWLKTHYTAEFMAAVL 771

Query: 782  SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGT 841
            S  MD+T+K  + +++  K   L++LPP+IN S ++F   + SD   K +RYGLGAIKG 
Sbjct: 772  SSDMDNTDKTVLFLQEC-KHLELTVLPPHINESTHHF--AVVSD---KILRYGLGAIKGV 825

Query: 842  GKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
            G + +E I+  R+   F  LFDF KR+D   +NR++I +L+ SG+FD   + R  L+ S+
Sbjct: 826  GINALENILAARQIKLFEGLFDFCKRVDPFKVNRKVIEALLRSGSFDEICKNRASLMKSL 885

Query: 902  DVALKNAEK--TKKFINQLSLFKND-DNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            D A+K +E+    +   Q  LF +D D ++ KE  N +K   WS+++ L  EK+ LG  L
Sbjct: 886  DHAIKASEQFHQNQHHKQTDLFDSDADESSSKE--NLIKTEEWSEQERLKGEKETLGLYL 943

Query: 959  SEHIFCIYETEIRQFI-PIYLSELKPTYSCTVSGIITELKLKTTYRG-KILIIVIDDNSN 1016
            S H    Y+ E+   + P      K       +G IT L+ + T +  K+  I++D+ + 
Sbjct: 944  SGHPLARYQQELSHLVTPFQPQPEKKETRVVFAGTITTLRTRLTKKNEKMAFIMMDNGTI 1003

Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKF 1076
              EV+   + + K +++L E  +L+V G    D+F +  +I  +  F +  AR  Y K  
Sbjct: 1004 QCEVVFFPESFSKIQHLLSEENILVVEGNASLDQFTQGYKIICQNAFTLEQARQHYAKHL 1063

Query: 1077 SVMF-NRTF---NISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
             +   ++ F   +   LK+I+  +      P  + Y  N ++K ++     + V P DDL
Sbjct: 1064 LMKIKDQKFMDEHAQTLKEIIKPY-LGGKFPLCIEY-YNDNLKVKINLDSQWHVNPHDDL 1121

Query: 1133 KLALINL 1139
               L+  
Sbjct: 1122 LSGLMQF 1128


>gi|92112711|ref|YP_572639.1| DNA polymerase III subunit alpha [Chromohalobacter salexigens DSM
            3043]
 gi|91795801|gb|ABE57940.1| DNA polymerase III, alpha subunit [Chromohalobacter salexigens DSM
            3043]
          Length = 1168

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1166 (43%), Positives = 735/1166 (63%), Gaps = 43/1166 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+H+EYS++DGL+R+  +IEA      PA+A+TD SNLFG++K YK+A   G
Sbjct: 1    MTTPFVHLRVHTEYSLVDGLVRLKPLIEATVEGGMPAVAVTDDSNLFGLVKTYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KP+IG D+W+ N  + + P R+ LL  +N+GY  L EL+S+ + E    G+  ++ EW+
Sbjct: 61   LKPVIGADLWMENPHDEEHPYRVTLLAMDNDGYRHLTELISQGWSEGQQRGQGILKKEWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                   GLIALSGA  G+IG  + +     A      W   FP  FY+E+QR  + +  
Sbjct: 121  FARSA--GLIALSGARDGEIGRYLLSEHGQAARELCEGWKAAFPGRFYLEVQRTGREHDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+    P+VAT+ ++FL + ++ AHE R  I EG+ L + +R +++++EQ 
Sbjct: 179  ECLHLSVALAAETETPVVATNDVRFLTREDYWAHETRVAIGEGKALDDPRRERRYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++ IA RCN+ +  G+  LP++P P  ++++ F    S  
Sbjct: 239  LKSPQEMAELFSDLPEALENSVMIAARCNVDVPLGEIFLPEYPVPDGMSMDGFFRKISHD 298

Query: 301  GLKKRLLNLYK-DPEIYKCEKLR-----YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
            GL +RL  L+  +  IY    L      Y++RL FE+  I++M F GYFLIV DFIQWAK
Sbjct: 299  GLTERLDKLFSGENPIYPGRDLAEYEPAYRERLDFELNIILEMGFPGYFLIVMDFIQWAK 358

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
            +N IPVGPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC E RD
Sbjct: 359  DNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRD 418

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            RVI+YV  RYG+DAVSQIVTFGTMAAK  +RDV R     YS  D +SKLIPF+ G  +T
Sbjct: 419  RVIEYVASRYGRDAVSQIVTFGTMAAKAVVRDVARAQGKPYSMGDKLSKLIPFEVG--MT 476

Query: 475  LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
            L+ AI++EP L E + ++EE +++ ++A ++EGI R  G HAGGV+IAP+KL +F PL  
Sbjct: 477  LAKAIEQEPALKEYLDSDEESQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFSPLLC 536

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLP 592
             E  +G++ QYDK+DIEE GL+KFDFLGL TL+I+D  +  +  +  +     L+   +P
Sbjct: 537  DEDGSGLVVQYDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDTVRAREGQGPLDIASIP 596

Query: 593  LNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
            L+D  T+++LKKA T AVFQLES+GMK ++K  +PD  E++IAL++L+RPGP+   ++ +
Sbjct: 597  LDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMIALVALFRPGPLQSGMVDD 656

Query: 651  FCRRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            F  RKHG     YP P       K VL  TYGI++YQEQVMQIAQ+L GYSLGQAD+LRR
Sbjct: 657  FINRKHGRAEVAYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGQADMLRR 716

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM + R  F  G    G+ K  A  +F+ +EKFAGYGFNKSH+ AY L+SY 
Sbjct: 717  AMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNLFDLVEKFAGYGFNKSHSAAYGLVSYQ 776

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TA+LK HY + FMAA LS  MD+ +K+  L+++  +  GL++ PP++N+  Y F   ++ 
Sbjct: 777  TAWLKAHYPAPFMAAVLSTEMDNLDKVVPLIEEC-RNQGLTVTPPDVNMGSYKF--TVDE 833

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLIN 883
             G   ++ YGLGAI+G G+  I AIV  R+  G F++LFDF +R+D K +N+R + +LI 
Sbjct: 834  QG---RVVYGLGAIRGVGEGPIGAIVEAREADGAFSDLFDFCRRVDAKRLNKRTLEALIR 890

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKN--DDNNNLKEYLNYVKVP 939
            SGA D     R +L+AS++ ALK A +  T   +  + +F     +      Y +Y  V 
Sbjct: 891  SGALDNLGPTRAVLMASLEAALKAAAQSTTNANLGMMDMFGEAFSEPEAGDAYADYRGVR 950

Query: 940  SWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY--SCTVSGIITELK 997
             W+ K+ L  EK  LG  L+ H    YE+E+++F+   + +LKP    S  V+G++  ++
Sbjct: 951  EWTDKERLAGEKDTLGLYLTGHPIDEYESELKRFVSTRIVDLKPQRGESQRVAGLVVAMR 1010

Query: 998  LKTTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
               + RG  +  I +DD +  +E  +  +++E+ +  L  +E+LI+ G+V  D +   +R
Sbjct: 1011 TMKSKRGDTMAFITLDDRTGRIEASLFGEMFEQVRGKLGTDEVLIIEGEVSTDDYSGGLR 1070

Query: 1057 INAEKIFDINVARILYGKKFSVMFNRT-----FNISILKKILLRFKCKNGLPF-VLYYCI 1110
            +  +++  +  AR  YG+   +  + T     F  S L   L  +    GLP  V Y   
Sbjct: 1071 LRGKEVTPMVDARTRYGEAVELTVDGTRLNGRFARS-LHDSLTPWCDPQGLPVRVRYRNP 1129

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLAL 1136
              S   E+  P  ++V P DDL +AL
Sbjct: 1130 EASGVLELGAP--WRVAPSDDLLIAL 1153


>gi|381150490|ref|ZP_09862359.1| DNA-directed DNA polymerase III PolC [Methylomicrobium album BG8]
 gi|380882462|gb|EIC28339.1| DNA-directed DNA polymerase III PolC [Methylomicrobium album BG8]
          Length = 1160

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1113 (44%), Positives = 729/1113 (65%), Gaps = 32/1113 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P+FIHLRLHSE+S++DG+++I  +++  A    PA A+TD  NLF ++KFYK+A  +G
Sbjct: 1    MQPKFIHLRLHSEFSLVDGIVKIKPLVKRLAELNMPAAAVTDHVNLFALVKFYKAAMGQG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKP+ G DV I N  E   P RL LLVKN  GY  L EL+SKAY E  + G   ++ EW+
Sbjct: 61   IKPVAGADVLIFNPDEPANPYRLTLLVKNRQGYTTLTELISKAYQEGQHQGVPMLKYEWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E N    GLIALSGA  GD+G A+   R + A+  A  W+ +FPD+FY+E+QR  +P   
Sbjct: 121  EAN--HSGLIALSGAMAGDVGRALTGERKEDAKRQALYWANLFPDSFYLELQRVGKPGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   +++A+   LP+VAT+ ++FL + +F AHEVR CI +G +L +++R K +T +Q 
Sbjct: 179  HYIAAALDLAAEAGLPVVATNDVRFLHRKDFDAHEVRVCINQGRVLDDSRRPKDYTNQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM +LF DIP A++NT+EIAKRCN+ L  GK  LP +P P+ + I D +  +S+ 
Sbjct: 239  LRSPEEMCELFADIPEALENTVEIAKRCNITLTLGKNFLPDYPVPEGMTIGDVMAEESRK 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL          + E  + Y  RL+ E+  I +M F GYF+IV+DFIQWAKN+ IP
Sbjct: 299  GLEERLRQHPPFGSGAEEENRKVYYDRLETELRVITQMGFPGYFMIVADFIQWAKNHRIP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DP+ ++LLFERFLNP RISMPDFD+DFC + RD VI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPIEFDLLFERFLNPERISMPDFDVDFCMDRRDEVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+D VSQI+T+G+MAAK   RDVGRVL   Y F D ++KLIPF+ G  +TL  A+
Sbjct: 419  VAEHYGRDQVSQIITYGSMAAKAVTRDVGRVLGFSYGFVDQLAKLIPFELG--MTLDKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++   L +R +NEEEVR L+++A+ +EG+ RN G HAGGV+I+P+KL +F PLY ++G  
Sbjct: 477  QDSHDLRQRYENEEEVRTLLDMARALEGMARNAGKHAGGVVISPTKLTDFTPLYCEQGGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
             +++Q+DKDD+E +GL+KFDFLGL TL+I+D  +  I  KK     T   +  +P +D  
Sbjct: 537  NLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALQTINRKKAERGETPVDIAAIPRDDPA 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            +Y +LK A T AVFQLES+GMK ++K+ KPD F++IIAL++L+RPGP++  ++ ++   K
Sbjct: 597  SYEILKTAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLESGMVDDYINVK 656

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG    Y  P    +L  T G+++YQEQVMQIA+ +GGY+LG AD+LRRA+GKKK  EM 
Sbjct: 657  HGAKAEYAHPILVPILKPTNGVILYQEQVMQIAREMGGYTLGGADMLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA+   + +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY + 
Sbjct: 717  KQREIFTTGAVANNIDEGIATYIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYPAE 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA LS  MD+T+K+ +L+++  +   L I PP+IN S ++F     +  +  KI YGL
Sbjct: 777  FMAAVLSADMDNTDKVVVLIEEC-RRMKLPIAPPSINDSNFHF-----TVNRTGKIVYGL 830

Query: 836  GAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GA+KG G++ IE ++ ER+  G + +L+D  KR+D + +NRR++ +LI +GAFD F+  R
Sbjct: 831  GALKGVGENAIEDMIREREENGPYKDLYDLCKRVDLRKVNRRVLEALIRAGAFDVFDPNR 890

Query: 895  YMLVASIDVALKNAEKTKKF--INQLSLF----KNDDNNNLKEYLNYVKVPSWSKKQELI 948
               +A +   LK AE+  K     Q  LF       + +++  Y  YV+   W +++ L 
Sbjct: 891  AAHLAELPTVLKVAEQHGKMAETGQNDLFGLQEAGPEEDSIAAYSTYVE--PWPEQERLN 948

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT-------YSCTVSGIITELKLKTT 1001
             EK+ LG  L+ H    YE EI QF    L++LK             V+G++ E++ + +
Sbjct: 949  AEKQTLGLFLTGHPIAQYEAEIGQFTHGSLNKLKSDMERSKGKMEARVAGLVVEIRTRQS 1008

Query: 1002 YRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
              GK +   ++DD ++ +EV +  ++YE++++I   + LL+  G +  D F    R+ AE
Sbjct: 1009 KNGKTMGFALLDDRTDRLEVAVYPEIYERHRDIFTRDVLLVAEGALAMDDFTGAPRLTAE 1068

Query: 1061 KIFDINVARILYGKKFSVMFNRTFNISILKKIL 1093
            K++ I+ AR  + +   +++N   N + L + L
Sbjct: 1069 KLYSIDQARNAFARGVQLIWNAGVNGNSLAEEL 1101


>gi|77164364|ref|YP_342889.1| DNA polymerase III subunit alpha [Nitrosococcus oceani ATCC 19707]
 gi|254433438|ref|ZP_05046946.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus
            oceani AFC27]
 gi|76882678|gb|ABA57359.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707]
 gi|207089771|gb|EDZ67042.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus
            oceani AFC27]
          Length = 1158

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1118 (44%), Positives = 718/1118 (64%), Gaps = 31/1118 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HLRLH+EYS++D L+RI  +I+A +    PA+A+TD SN+F +IKFY++A   G
Sbjct: 1    MAPSFVHLRLHTEYSLVDSLVRIRPLIQATSEAGMPAVAVTDQSNVFAMIKFYRAAQAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+++    E+ + SR  LL +N  GY  L  LLS+AY E    G   ++ +WL
Sbjct: 61   VKPIIGADIFLVGSGEHSRVSRFTLLCQNELGYRNLSSLLSRAYREGQYQGIPRLQWDWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     DGLI LSG   GD+G A+  G +  A     RW  +FP  +Y+E+ R  +    
Sbjct: 121  QN--LNDGLIILSGGREGDVGQALLAGNDIQAGKLLERWQALFPGRYYLELHRTGREGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   I +A   + P+VAT+ ++FL+  +F AHE R CI EG  L++ +R + ++++Q 
Sbjct: 179  DYLHAAIALALARDTPVVATNDVRFLRPQDFEAHEARVCIHEGRTLNDPRRPRHYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T SEM +LF D+P A++NT+EIA+RCNL+L  GK  LP FP P++++I  FL ++++ 
Sbjct: 239  LRTPSEMTELFADLPEALENTVEIARRCNLELTLGKHYLPNFPVPEDLSIEAFLAAEARR 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL+ LY      + E+  Y+ RL  E+  I +M F GYFLIV+DFI+WAK N IPV
Sbjct: 299  GLEQRLVKLYPREAKRETEQPAYEARLAEELAVINQMGFPGYFLIVADFIRWAKKNGIPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+S+PDFDIDFC E RDRVI YV
Sbjct: 359  GPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFCMERRDRVIDYV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG+D VSQI+T+G+MAAK  +RDVGRVL   Y F D I+KLIPF     +TL  A+ 
Sbjct: 419  SHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFD--LKMTLDKALA 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            E   L  R + EEEVR LI+LA+++EG+IRN G HAGGV+IAP KL  + P Y ++G +G
Sbjct: 477  ESEGLRSRYEGEEEVRFLIDLARKLEGLIRNAGKHAGGVVIAPKKLTEYVPYYCEQGASG 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
            +++Q+DKDDIE IGL+KFDFLGL TL+ILD  +  I +  T+       L  LP++D  +
Sbjct: 537  VVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGEALLDLALLPMDDPKS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            Y LLK+  T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ ++  RKH
Sbjct: 597  YALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDDYINRKH 656

Query: 657  GE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G    NYP P  + +L  TYG++VYQEQVMQIAQ+L GY+LG+ADLLRRA+GKKK  EM 
Sbjct: 657  GRAQVNYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            E R  F  GA    + +  A  IF+ +EKFA YGFNKSH+ AYA+++Y TAYLK HY + 
Sbjct: 717  EQRAIFTAGAKAREVDEKTATAIFDLMEKFAEYGFNKSHSAAYAVIAYQTAYLKAHYPAS 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            +MAA LS  MD+T K+K  V++      L +LPP++N S Y F     S      IRYGL
Sbjct: 777  YMAAVLSADMDNTEKVKAFVEECW-AMNLDLLPPDVNASNYSF-----SAQGETAIRYGL 830

Query: 836  GAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G + +E I+  R + G + +LF+F +RID + ++RR++ +LI +GA D    +R
Sbjct: 831  GAIKGVGAAALEGIIKVRERHGPYQDLFEFCRRIDLRKVSRRVLEALIRAGALDSLGVER 890

Query: 895  YMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L AS++ AL  AE+  +   + Q  LF  D  +   E  NYV+V  W K+Q L  EK+
Sbjct: 891  ATLEASLETALALAEQHCRNASLGQNDLFGLDLVSEEGEAGNYVEVREWDKEQRLALEKE 950

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL--------KPTYSCTVSGIITELKL-KTTYR 1003
             LG  LS H    Y+ E++Q  P  + EL               ++G++  ++  K    
Sbjct: 951  TLGLYLSGHPIDCYKQELKQIAPCRIVELIDRANNRQSRNQQIVIAGLVGSVRTNKARQG 1010

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
            G+   + ++D S  +E+    ++++K +  L+ + ++++ G +  D +  +  + AEKI+
Sbjct: 1011 GRNAFVTLEDGSARLEIKAFAEVFDKYRERLQLDHIVVIEGALKWDSYADSTAVTAEKIY 1070

Query: 1064 DINVARILYGKKFSVMFNRTFN----ISILKKILLRFK 1097
             I  A+ ++ K   +  + T      I+ L +IL  F+
Sbjct: 1071 SIAEAQEVFAKSLEIGLDGTRMGQEVIAELAQILAPFR 1108


>gi|359787463|ref|ZP_09290510.1| DNA polymerase III subunit alpha [Halomonas sp. GFAJ-1]
 gi|359295280|gb|EHK59555.1| DNA polymerase III subunit alpha [Halomonas sp. GFAJ-1]
          Length = 1167

 Score =  977 bits (2526), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1167 (42%), Positives = 734/1167 (62%), Gaps = 39/1167 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLHSEYS++DGL+++  +I   A    PALA+TD +NLFG++KFYK+A    
Sbjct: 1    MTVPFVHLRLHSEYSLVDGLVKLKSLISTTAERGMPALALTDEANLFGLVKFYKAAQGAA 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+W+ N  ++  P R+ LL  +  GY  L EL+SK + E    GRA +  +W+
Sbjct: 61   LKPIIGSDLWLHNPNDDAHPYRITLLAMDGVGYRNLTELISKGWSEGQRQGRAILDKQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                  DGLIALSG   G+IG  + +     A      W + FPD FY+E+ R  +P   
Sbjct: 121  LDQS--DGLIALSGGREGEIGRHLLSEHEREARLLLEEWQRAFPDRFYLELIRTGRPLEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A   N P+VAT+ ++FL++ +F AHE R  I EG+ L + +R +++T+EQ 
Sbjct: 179  ECVHASVQLAIESNTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERRYTEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM  LF DIP A++N++ IA+RC++ +  G+  LP+F  P+ +  ++F    S  
Sbjct: 239  LKSPEEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFEIPEGMTQDEFFRKVSHD 298

Query: 301  GLKKRLLNLY------KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
            GL +RL  L+      +D E ++    RY+ RL+FE+  II+M F GYFLIV DFIQWAK
Sbjct: 299  GLTERLDFLFPAEQYPRDSETFREIDQRYRDRLEFELNVIIQMKFPGYFLIVMDFIQWAK 358

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
            +N +PVGPGRGSGA SLVAY+  ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E RD
Sbjct: 359  DNGVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRD 418

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            +VI YV DRYG++AVSQIVTFGTMAAK  +RDV R     YS  D +SKLIPF+ G  +T
Sbjct: 419  KVIDYVADRYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVG--MT 476

Query: 475  LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
            L+ AI++EP L E I+ +EE  ++ E+A ++EG  R  G HAGGV+IAP+KL +F PL  
Sbjct: 477  LAKAIEQEPALKEFIEKDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLC 536

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLP 592
             E  +G++ Q+DK+DIEE GL+KFDFLGL TL+I+D  +  + K+        LN   +P
Sbjct: 537  DEDGSGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALKMVDKVRGVNGQEPLNIDAIP 596

Query: 593  LNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
            L+D  T+ +LK+A T AVFQLES+GMK ++K   PD  +++IAL++L+RPGP+   ++ +
Sbjct: 597  LDDGKTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDD 656

Query: 651  FCRRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            F  RKHG    +YP P       K VLS TYGI++YQEQVMQIAQ++ GYSLGQAD+LRR
Sbjct: 657  FINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRR 716

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM + R  F  G    G+ K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY 
Sbjct: 717  AMGKKKPEEMAKQRAGFMEGCADNGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQ 776

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TA+LK HY   FMAA +S  MD+ +K+  L+++  +   L++ PP++N+  Y F   +++
Sbjct: 777  TAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEEC-RNLKLTVTPPDVNVGGYRF--TVDT 833

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLIN 883
            +G   ++ YGLGAI+G G+  I AIV  R   G F +LFDF +R+D K +N+R + +LI 
Sbjct: 834  EG---RVVYGLGAIRGVGEGPIGAIVEARNTDGPFKDLFDFCRRLDPKRMNKRTLEALIR 890

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKND---DNNNLKEYLNYVKV 938
            SGA D     R +L A+++ ALK A +    + +  L +F      +      Y  Y   
Sbjct: 891  SGALDTLGPNRAVLAAAMEDALKAAAQNHANQNLGMLDMFGESFSAEEEASDPYAEYHNA 950

Query: 939  PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELK 997
              W+ ++ L  EK  LG  L+ H    YE E+++F+   +S+LKP+     V+G++  ++
Sbjct: 951  REWTDRERLSGEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSREPQRVAGLVVAMR 1010

Query: 998  LKTTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
               + RG  +  I +DD +  +E  +  +L+E+ +  ++ ++++IV G+V  D F   +R
Sbjct: 1011 TMKSKRGDTMAFITLDDRTGRIEASLFGELFEQLRGQIESDQVIIVEGEVSNDDFSGGMR 1070

Query: 1057 INAEKIFDINVARILYGKKFSVMFN-RTFN---ISILKKILLRFKCKNGLPFVLYYCINK 1112
            +  + +  +  ARI YG+   +  +    N   +  L+  L  ++ + GLP  L Y    
Sbjct: 1071 LRGKDVTPMVTARIRYGQAVELALDAEQINGRLVESLRDSLTPYRDEAGLPVRLQYRHPD 1130

Query: 1113 SIKYEMKFPLNYKVQPIDDLKLALINL 1139
            ++ + ++    +KV P DDL LAL ++
Sbjct: 1131 AVAW-LELADEWKVAPSDDLLLALRDV 1156


>gi|94501921|ref|ZP_01308431.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65]
 gi|94425974|gb|EAT10972.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65]
          Length = 1164

 Score =  977 bits (2526), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1155 (44%), Positives = 752/1155 (65%), Gaps = 44/1155 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+H+EYS++DG++R+ ++I+AA  D Q AL I+D SN+F ++KFY +    GIKPI
Sbjct: 7    FVHLRVHTEYSLVDGIVRVKELIKAADADQQIALTISDQSNMFALVKFYTACQATGIKPI 66

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            I  DV+I N  +   P  + L+ +N+ GY  L EL+S  + +N ++ RA+++ EW E+  
Sbjct: 67   ISADVFIENPDDMANPYAITLIAQNDVGYRNLTELVSAGFTKNQHHDRAQLKQEWFEEKA 126

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              DGLIALSG   GDI  A++  + ++A +   RW ++FP  FY+E+QR ++PN    +Q
Sbjct: 127  --DGLIALSGFQRGDIEEALKKDKFELAASRLDRWLELFPQRFYLELQRTQRPNDEALLQ 184

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
            + I +A++  +P+VAT+ ++F+K+ +F AHE R CI EG  L + +R ++++ +Q FKTQ
Sbjct: 185  KSIKLAADKQVPVVATNDVRFMKQDDFDAHEARVCIGEGMTLIDPRRERRYSDQQYFKTQ 244

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             +M +LF DIPSAI N++EIA RCN+++  GK  LP++P P  +  N+F    S  GL++
Sbjct: 245  QQMCELFEDIPSAITNSVEIATRCNVQVLLGKYFLPEYPIPDGLTENEFFKKISYEGLEE 304

Query: 305  RLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L    DP+  +  K  Y  RL FE++ II+M F GYFLIV DFIQWAK++ IPVGP
Sbjct: 305  RLEFLIDKNDPQYEEVRKA-YFDRLDFELDIIIQMGFPGYFLIVMDFIQWAKDHDIPVGP 363

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+  ITDIDPL Y+LLFERFLNP R+SMPDFDIDFC E RDRVI YV D
Sbjct: 364  GRGSGAGSLVAYAQKITDIDPLEYDLLFERFLNPERVSMPDFDIDFCMEKRDRVISYVAD 423

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQIVT+GTMAAK  +RDV RV    Y   D +SKLIP  PG  +TL+ A+ EE
Sbjct: 424  NYGREAVSQIVTYGTMAAKAVVRDVARVQGKSYGLADKLSKLIPGDPG--MTLAKALDEE 481

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E I ++EE +++ E+A+++EGI R  G HAGGV+IAP+KL +F P   +E  TG++
Sbjct: 482  PALGEFIDSDEEAQEIWEMAQKLEGITRQTGKHAGGVVIAPTKLTDFSPTLCEEDGTGLV 541

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  I  K       + ++PL+D  +Y 
Sbjct: 542  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALNTINDIRAKNNEEPLRIEEIPLDDAPSYK 601

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LLK+A T AVFQLES+GMK++++  +PD  EE+IAL++L+RPGP++  ++ +F  RKHG 
Sbjct: 602  LLKEAKTTAVFQLESRGMKDLIRRLEPDNIEEMIALVALFRPGPLESGMVDDFINRKHGR 661

Query: 659  Y-FNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                YP P       K++L  TYG++VYQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 662  AEVAYPHPDYQHESLKEILEPTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 721

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R+ F+ GA   G     A +IF+ +EKFAGYGFNKSH+ AYA++SY T +LKTHY
Sbjct: 722  EMAKQRETFREGAASIGNDPDLAMKIFDLVEKFAGYGFNKSHSAAYAVVSYQTLWLKTHY 781

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA L+  M +T+K+ I +++  +  GL ++ P++N S+Y F   +   G    I 
Sbjct: 782  PAPFMAAVLTSDMQNTDKVVIFIEEC-REMGLDLVLPDVNESEYGF--TVNDSG---AIV 835

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGA+KG G+  IEAI+T RK  G FT+LF F K +DK  IN+R++ +L+  GAFD   
Sbjct: 836  YGLGAVKGVGEGPIEAIITARKEKGPFTDLFHFCKSVDKSKINKRVLEALVRCGAFDKIG 895

Query: 892  EKRYMLVASIDVALKNAEKTKK-----FINQLSLFKNDDN-NNLKEYLNYVKVPSWSKKQ 945
              R +L ASI+ ALK A+++ K      ++   + + + N N   EY N  KV  W+ KQ
Sbjct: 896  PNRSVLFASIEDALKAADQSAKNAAAGMMDMFGVVEEEANINPYDEYKN--KVRDWTPKQ 953

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYR- 1003
            +L  EK  LG  ++ H F  YETE++      L+ ++       ++GI+ + ++  T R 
Sbjct: 954  KLKGEKDTLGLYVTGHPFDEYETELKNIARTRLANIQADKKPQKIAGIVVDQRVMKTKRG 1013

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
            G + I+ IDD +  ++V + + +YE+ K+ L  + LLI+  +V  D +  ++  N   ++
Sbjct: 1014 GNMAIVTIDDRTARMDVRLFSDIYEQYKDKLLVDHLLIMEVEVKYDNYNDSLGANLIHLW 1073

Query: 1064 DINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPF------VLYYCINKSIKYE 1117
            D+  AR +    FS     T N + + + L+R   +   PF      VL   +    K  
Sbjct: 1074 DVTQARAI----FSQGVKLTLNYAKIDRHLIRSMTEKLAPFNVDGAQVLVDYVGPQAKAR 1129

Query: 1118 MKFPLNYKVQPIDDL 1132
            ++   +YKV+  DDL
Sbjct: 1130 LQLGQDYKVEANDDL 1144


>gi|53804349|ref|YP_113748.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath]
 gi|53758110|gb|AAU92401.1| DNA polymerase III, alpha subunit [Methylococcus capsulatus str.
            Bath]
          Length = 1165

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1159 (42%), Positives = 730/1159 (62%), Gaps = 39/1159 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P+F+HLR+H+EYS++DG++RI  +++  +    PA+A+TD  NLF ++KFYK+A   G
Sbjct: 1    MEPKFVHLRIHTEYSLVDGIVRIKPLVKRLSEFGMPAVAVTDQCNLFALVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G DVW+ N  +   P RL LLV+N  GYL L EL+S++Y EN + G   +  EWL
Sbjct: 61   IKPIAGADVWLQNPQDVSSPHRLTLLVQNQEGYLALTELISRSYQENQHQGVPMLMPEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                   GLIALSG   G IG A+  G    A   A  W  +F D FY+E+ R  + N  
Sbjct: 121  ADCNA--GLIALSGGRDGAIGHALLAGSGAEATRLAEYWGGMFRDRFYLEVCRTGRANEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   + +A+ ++LP+VAT+ ++FL   EF AHE R CI +G +L + +R + ++++Q 
Sbjct: 179  RYIDAAVELAACLDLPVVATNDVRFLSAKEFEAHEARVCIHQGRVLDDPRRPRDYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +++ EM+ LF D+P A++N++EIA+RCNL L  GK  LP FP P  +  +DF   +S+ 
Sbjct: 239  LRSEEEMLSLFADLPEALENSVEIARRCNLGLTLGKNFLPDFPVPAGMTPDDFFSEQSRQ 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GLK+RL +         +    RY  RL+ E+  I +M F GYFLIV+DFIQWAK+  IP
Sbjct: 299  GLKERLAVRPPSGAGTLEERTQRYWCRLELELSVIREMGFPGYFLIVADFIQWAKSQGIP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DP+ ++LLFERFLNP R+SMPDFD+DFC E RD VI Y
Sbjct: 359  VGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMERRDEVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V  +YG+D VSQI+T+G+MAAK  +RDVGRVL   Y F D I+KLIPF+ G  ITLS A+
Sbjct: 419  VARKYGRDKVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFELG--ITLSKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++  +L +  + +EEVR L++LA+ +EGI RN G HAGGV+IAPS+LI+F PLY + G  
Sbjct: 477  EDSEELRKSYEEDEEVRALLDLAQSLEGITRNPGKHAGGVVIAPSRLIDFSPLYCEPGGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
             +++Q+DKDD+E +GL+KFDFLGL TL+I+D  +  I  K+         +N++PL+D  
Sbjct: 537  NLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALADINAKRRAAGEEPVDINRIPLDDPK 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL +  T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ ++   K
Sbjct: 597  TYELLGRCATTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDDYINVK 656

Query: 656  HGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
            HG     YP P  + +L  T G+++YQEQVMQIA+ + GY+LG ADLLRRA+GKKK  EM
Sbjct: 657  HGRTKAEYPHPVLEPILKPTNGVILYQEQVMQIARDMAGYTLGGADLLRRAMGKKKPEEM 716

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
             + R+ F  GA + G+    ++ IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK HY +
Sbjct: 717  AKQREIFIAGATRQGIDPSISSHIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPA 776

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FM+A LS  MD+T+K+ +L+ D  +   LSILPP+INLS+Y F     +    ++I YG
Sbjct: 777  EFMSAVLSADMDNTDKVVVLI-DECREMKLSILPPDINLSEYRF-----TVRGRREILYG 830

Query: 835  LGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KG G++ I+ I+ ERK  G FT+L D  +RID +  NRR++ ++I +G FDCF+  
Sbjct: 831  LGAVKGVGQTAIDDILQERKNNGPFTDLLDLCRRIDLRKANRRVLEAMIRAGVFDCFDRN 890

Query: 894  RYMLVASIDVALKNAEKTKKF--INQLSLFKN---DDNNNLKEYLNYVKVPSWSKKQELI 948
            R  L A++   +K AE+        Q  LF     +        L   ++  W++ + L 
Sbjct: 891  RAALFAALPDVVKAAEQQGAMSAAGQDDLFGGFTAESPAASSAGLVATEIEPWAEAERLA 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL-------KPTYSCTVSGIITELKLKTT 1001
            +EK  LG  L+ H    +E E+ Q +   L  L       +      V+G+I +++ + T
Sbjct: 951  QEKATLGLYLTGHPITPHERELEQIVTSRLGPLMGEGEGGRGDTRVVVAGLIVDIRTRLT 1010

Query: 1002 YRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
              G K+  + +DD +  +E+ +  + ++++ + L ++ L++V G +  D +    RI AE
Sbjct: 1011 RSGQKMGFLSLDDRTGRMEIAVYTETFQRDGHHLAKDGLIVVDGTLGYDEYAGQTRITAE 1070

Query: 1061 KIFDINVARILYGKKFSVMFNRTFNISI-------LKKILLRFKCKNGLPFVLYYCINKS 1113
            +I  I  AR  + +   + +       +        KK+L RF    G P  + Y   + 
Sbjct: 1071 RILSIEDARAHFARCLRIEWPGAVPDGVPPSFLAEFKKLLDRF-AGGGCPVHVAY-RGRR 1128

Query: 1114 IKYEMKFPLNYKVQPIDDL 1132
             +  ++    ++V P D+L
Sbjct: 1129 AQTVLRLGDGWRVHPRDEL 1147


>gi|256823112|ref|YP_003147075.1| DNA polymerase III subunit alpha [Kangiella koreensis DSM 16069]
 gi|256796651|gb|ACV27307.1| DNA polymerase III, alpha subunit [Kangiella koreensis DSM 16069]
          Length = 1161

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1172 (43%), Positives = 748/1172 (63%), Gaps = 35/1172 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P+FIHL++H+EYS++D ++RI  +I        PA+A+TD  N+ G++KFY  + + G
Sbjct: 1    MTPRFIHLKMHTEYSMVDSVVRIKPLIATCKEHQIPAIAMTDQMNMCGLVKFYSQSVSAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+ I N  +  +  R+  L  NN GYL L  ++S+AY++N + G   ++ EWL
Sbjct: 61   IKPIAGADLLIQNPNDEDEHFRVTALCMNNTGYLNLKYVISRAYLKNQHRGLPLVKKEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  Y +GLI LSG   GD+G A+  G  D A +    W+  F D FY+E+QR  +P  N
Sbjct: 121  PE--YAEGLIILSGGRQGDVGKALLAGNMDQAASNLGFWNHHFKDRFYLELQRTGRPQEN 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I Q I +A   + P+VAT+ ++F+ K +F AHE R CI +G +L++ +R ++++++Q 
Sbjct: 179  EYIHQVIGLAQGASTPVVATNDVRFIDKEDFDAHEARVCINQGRVLADPRRPREYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +++ EM++LF DIP A++N++EIAKRCNL++  G+  LP+FP P+ + I  +    SK 
Sbjct: 239  LRSEQEMVELFEDIPEALENSVEIAKRCNLEMRLGEYFLPEFPIPEGMTIAQYFEKVSKD 298

Query: 301  GLKKRLLNLY-KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL  L+ ++ + +   +  Y +RLQ E++ I  M F GYFLIV+DFIQW+KNN +P
Sbjct: 299  GLEERLDQLFDRNADDFAEIRKAYDERLQIELDVINDMGFPGYFLIVADFIQWSKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY++ ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYAMKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V +RYG+++VSQI+TFGTMAAK  IRDVGRV    Y F D ++KLIPF+ G  +TL  A 
Sbjct: 419  VAERYGRNSVSQIITFGTMAAKAVIRDVGRVFSHPYGFVDKLAKLIPFEVG--MTLEKAF 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++EP+L    + +E+VR+L +LA+++EG+ RN G HAGGV+IAP+ L  F PLY  E   
Sbjct: 477  EQEPELPRLYEEDEDVRELWDLARKLEGVTRNAGKHAGGVVIAPNDLEEFAPLYCDETGH 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
             I++Q+DKDD+E  GL+KFDFLGL TL+I+D  I     I  K       +  +   D+ 
Sbjct: 537  NIVTQFDKDDVESAGLVKFDFLGLRTLTIIDWAIETANGIIAKKGEEPIDITAIDTEDQQ 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
             ++LL++A+T AVFQLES+GMK+++K  KP+ FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 597  VFDLLQRADTTAVFQLESRGMKDLIKRLKPNRFEDIIALVALFRPGPLQSGMVDNFINRK 656

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 657  HGREIVSYPDANYQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADILRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GAIK  +    A +IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK
Sbjct: 717  KPEEMEKQRSIFKEGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVAYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA +S  MD+T+K+   V+DA  +  L+I PP++N  +Y F   ++ +G   
Sbjct: 777  THHPAAFMAAVMSSDMDNTDKVVTYVEDAANS-NLTITPPDVNKGQYRFS--VDEEG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IE+IV ER+  G + +LFDF  R+D K  NRR + +LI +GA D
Sbjct: 831  RIVYGIGAIKGVGEGAIESIVNEREANGPYKDLFDFCSRVDLKKANRRTLEALIRAGAMD 890

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+AS+D A+K AE+  K     Q  LF +       E   Y++V  W+ +Q 
Sbjct: 891  LIGPNRATLMASLDEAVKAAEQFNKSQAAGQDDLFGSVVATTATEQHQYIRVKPWTDEQV 950

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYR 1003
            L  EK+ LG  L+ H    Y  EI+Q     L  L+PT    S  V G+I  +++  T R
Sbjct: 951  LQGEKETLGLYLTGHPIDRYIPEIKQMSITRLRNLQPTGRGNSARVVGLIVGMRVMNTKR 1010

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G K+ I+ +DD S   +V +  + +E  +++L  + +++V G+   D +     ++A  +
Sbjct: 1011 GDKMAILTLDDKSGRCDVTVYAETFETYRHLLSRDNVIVVDGEARHDDYSGGTSVSANSV 1070

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCIN-----KSIKYE 1117
                 AR  Y KK  +  + +  I     + L  K  +         IN     K I  +
Sbjct: 1071 MSFEQAREQYCKKIVITISDSV-IGPDTMVELEEKISHNRDGACPVVINFQYQQKQIAGD 1129

Query: 1118 MKFPLNYKVQPIDDLKLALINL-GLYNAIIEY 1148
                 ++ VQP+D L  +L ++ G  +A +EY
Sbjct: 1130 FIMSEDWCVQPVDALVFSLKHIPGCVDARVEY 1161


>gi|270156895|ref|ZP_06185552.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968]
 gi|289164676|ref|YP_003454814.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150]
 gi|269988920|gb|EEZ95174.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968]
 gi|288857849|emb|CBJ11696.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150]
          Length = 1148

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1144 (44%), Positives = 739/1144 (64%), Gaps = 27/1144 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL+R+  +++A  +    ++A+TD  NLF  +K YKSA   G
Sbjct: 1    MQHRFVHLRVHTEFSLVDGLVRVKPLMKALPSRGMYSVALTDHCNLFAAVKHYKSAIEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   N     +   L+LL  N+ GY  L  L+SKAY E    G+  ++ +W+
Sbjct: 61   IKPIIGSDLPCHNPEHPDRVFSLILLCLNSEGYKNLTCLISKAYQEGQYQGQPRVQNQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                Y  GLIALSG   GDIG A+     ++A + A  W ++F + FY+EIQR  +P   
Sbjct: 121  PD--YSAGLIALSGGKSGDIGQALLADDEELATSRALYWQELFSNRFYLEIQRTGRPEEA 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ I +A+ + LP+VAT+ ++FL K +F AHE R CI EG  L++ +R +K++ +Q 
Sbjct: 179  DYNKKLIALANKLKLPLVATNDVRFLDKDDFEAHEARVCIHEGYTLADPRREQKYSAQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+ NT+EI+KRC +KL+ G   LP FP P    + ++L   SK 
Sbjct: 239  LRSADEMASLFADLPSALSNTVEISKRCTVKLDLGNNYLPNFPIPDGSTVENYLSHLSKT 298

Query: 301  GLKKRLLNLYKD--PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RLL ++K+  PE     +  Y KRLQ E++ I  M F+GYFLIV+DFIQWAKNN +
Sbjct: 299  GLEERLLQIFKNKSPEDLLNTRSEYDKRLQIELDVINNMGFAGYFLIVADFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITL+ A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLNKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R   EEEV++LI+LA ++EGI RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  LEQEEELKRRYTEEEEVKELIDLALKLEGITRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDK 596
            + I+SQ+DKDD+E  GL+KFDFLGL TL+I+D  +  + +   +       ++++P +D 
Sbjct: 537  SQIVSQFDKDDVEAAGLVKFDFLGLRTLTIIDWALATVNRQRGREGLPPIDISQIPTDDP 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             +++LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  ASFDLLKACQTTAVFQLESRGMKELINRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRAAVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA + G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGATERGVDEKVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F  + ++      I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLKVLPPSINHSMYHFTVVDDA-----TIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S I+ I+  R   G + +LF F +R+D + +NRR++ +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIDCILEARDLGGSYPDLFSFCQRLDLRKVNRRVLEALIKSGAFDQWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   D+   ++   YV   SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKIAEKEHQNQSSGQFDLFSLLDDGAKEQ--EYVLCKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E   FI + +S+L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADQYRREFGDFI-VPISQLNPSMQKKAVICAQVVAIRKVVTKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD++  ++++I ++L+E   + L   ++LIV G V  D +   ++++A  +FD+  
Sbjct: 1008 ILGMDDSTARLDIVIFDELFESFSSTLGIGDMLIVEGDVAHDDYNGGVKMSASSLFDVPS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  +     +IL  I    K   G   V +   N+  K ++     + + 
Sbjct: 1068 ARTKFARCLELRLH-AGQQAILPSIQALLKAHVGRCAVQFSYSNEYAKAQLSLAPQWNIT 1126

Query: 1128 PIDD 1131
            P D+
Sbjct: 1127 PSDE 1130


>gi|338999291|ref|ZP_08637941.1| DNA polymerase III subunit alpha [Halomonas sp. TD01]
 gi|338763855|gb|EGP18837.1| DNA polymerase III subunit alpha [Halomonas sp. TD01]
          Length = 1167

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1167 (42%), Positives = 739/1167 (63%), Gaps = 39/1167 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLHSEYS++DGL+++  ++   A    PALA+TD +NLFG++KFYK+A   G
Sbjct: 1    MTVPFVHLRLHSEYSLVDGLVKLKSLVGTTAERGMPALALTDEANLFGLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+W+ N  +   P R+ LL  N+ GY  L EL+SK + +    GRA +  +W+
Sbjct: 61   LKPIIGSDLWLYNPHDESHPYRITLLAMNDVGYRNLTELISKGWTDGQRQGRAILDKQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                  +GLIALSG   G+IG  + +     A      W + FPD FY+E+ R  +P   
Sbjct: 121  LAQS--EGLIALSGGREGEIGRHLLSDHEREARELLEEWQRAFPDRFYLELIRTGRPLEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A   N P+VAT+ ++FL++ +F AHE R  I EG+ L + +R +++T+EQ 
Sbjct: 179  DCVHASVKLAIESNTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERRYTEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM  LF DIP A++N++ IA+RC++ +  G+  LP+F  P+ +  ++F    S  
Sbjct: 239  LKSPEEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFEIPEGMTQDEFFRKVSHD 298

Query: 301  GLKKRLLNLY------KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
            GL +RL  L+      +D ++Y+    RY+ RL+FE+  II+M F GYFLIV DFIQWAK
Sbjct: 299  GLTERLDFLFPVEQYPRDSDVYREIDQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWAK 358

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
            +N++PVGPGRGSGA SLVAY+  ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E RD
Sbjct: 359  DNNVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRD 418

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            +VI+YV +RYG++AVSQIVTFGTMAAK  +RDV R     YS  D +SKLIPF+ G  +T
Sbjct: 419  KVIEYVANRYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVG--MT 476

Query: 475  LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
            L+ AI++EP L E I N+EE  ++ E+A ++EG  R  G HAGGV+IAP+KL +F PL  
Sbjct: 477  LAKAIEQEPALKEFIGNDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLC 536

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLP 592
             E  +G++ Q+DK+DIE+ GL+KFDFLGL TL+I+D  +  + K+        LN   +P
Sbjct: 537  DEDGSGLVVQFDKNDIEDAGLVKFDFLGLRTLTIIDWALEMVDKVRGVNGQAPLNIDAIP 596

Query: 593  LNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
            L+D  T+ +LK+A T AVFQLES+GMK ++K   PD  +++IAL++L+RPGP+   ++ +
Sbjct: 597  LDDSKTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDD 656

Query: 651  FCRRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            F  RKHG    +YP P       K VLS TYGI++YQEQVMQIAQ++ GYSLGQAD+LRR
Sbjct: 657  FINRKHGRAEVSYPHPDYQHDLLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRR 716

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM + R  F  G    G+ K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY 
Sbjct: 717  AMGKKKPEEMAKQRSGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQ 776

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TA+LK HY   FMAA +S  MD+ +K+  L+++  +   L++ PP++N+  Y F   +++
Sbjct: 777  TAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEEC-RHLKLTVTPPDVNVGGYKF--TVDT 833

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLIN 883
            +G   ++ YGLGAI+G G+  I AIV  R   G F +LFDF +RID K +N+R + +LI 
Sbjct: 834  EG---RVVYGLGAIRGVGEGPIGAIVEARSTDGPFKDLFDFCRRIDPKRMNKRTLEALIR 890

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKN---DDNNNLKEYLNYVKV 938
            SGA D     R +L A+++ ALK A +    + +  L +F +    +      Y  Y   
Sbjct: 891  SGALDNLGPNRAVLAAAMEDALKAAAQNHANQNLGMLDMFGDAFTAEEEETDPYAEYQGA 950

Query: 939  PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELK 997
              W+ ++ L  EK  LG  L+ H    YE E+++F+   +S+LK +     V+G++  ++
Sbjct: 951  REWTDRERLSGEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKASREPQRVAGLVVAMR 1010

Query: 998  LKTTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
               + RG  +  I +DD +  +E  +  +L+++ +  ++ ++++IV G+V  D F   +R
Sbjct: 1011 TMKSKRGDTMAFITLDDRTGRIEASLFGELFDQLRGQIESDQVIIVEGEVSNDDFSGGLR 1070

Query: 1057 INAEKIFDINVARILYGKKFSVMFN-RTFN---ISILKKILLRFKCKNGLPFVLYYCINK 1112
            +  + +  +  ARI YG+   +  +    N   +  L++ L  ++   GLP  L Y  ++
Sbjct: 1071 LRGKDVTPMVTARIRYGEAVELALDAEQINGRLVDSLRESLSPYRDTGGLPVRLQYRHSE 1130

Query: 1113 SIKYEMKFPLNYKVQPIDDLKLALINL 1139
            ++ + M     +KV P DDL LAL ++
Sbjct: 1131 AVGW-MALADEWKVAPSDDLLLALRDV 1156


>gi|406915567|gb|EKD54635.1| hypothetical protein ACD_60C00060G0003 [uncultured bacterium]
          Length = 1148

 Score =  974 bits (2518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1151 (45%), Positives = 758/1151 (65%), Gaps = 25/1151 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P FIHLR+H+E+S+ DGL++I+++I+ A+  + PA+AITD SNLF +IKFYK+A   G
Sbjct: 1    MAPTFIHLRIHTEFSLSDGLVKIDNLIDKASAHHMPAVAITDQSNLFAVIKFYKAAMLAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+W+ NE E +KP RL L  +N+ GY  L EL+SK+++E   + +A I+  WL
Sbjct: 61   IKPIIGADIWLENEKEPEKPFRLTLFCQNDQGYKNLLELISKSFLEGQAHDKAIIKHTWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               ++  GLI LSGA  GD+G A+    N  A      W+  F + +Y+E++R  +P+  
Sbjct: 121  --YEFSLGLIVLSGAEEGDVGQALLMENNKHAAQLITDWATHFKNRYYLELRRTGKPHEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQ  + +A   ++P+VAT+ ++FLK+ +F AHE R CI  G IL++ +R K++T +Q 
Sbjct: 179  TYIQAALVLAEKHSIPVVATNDVRFLKQDDFEAHEARVCIHNGFILTDPRRPKQYTDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F++Q+EM  LF DIP A+QNT++IAKRCN+ L F K  LP++P P       +L   +K 
Sbjct: 239  FRSQNEMTALFADIPEALQNTVQIAKRCNVTLLFDKNYLPRYPVPDGFTTETYLTDVAKQ 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL ++   +   ++ ++L Y KRLQ E++ I KM F+GYFLIV+DF +WA+NN +P
Sbjct: 299  GLEERLRVSFDTNAPQFELKRLAYDKRLQTELDVINKMGFAGYFLIVADFTRWARNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSG  SLVAY+L+ITD+DPL + LLFERFLNP R+SMPDFDIDFC EGRDRVI+Y
Sbjct: 359  VGPGRGSGPGSLVAYALNITDLDPLLHELLFERFLNPERVSMPDFDIDFCMEGRDRVIEY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   +G+D+VSQI+T+GTMAA+  +RDVGRVL + Y   D ++KLIPF+ G  +TL  A+
Sbjct: 419  VMQTHGRDSVSQIITYGTMAARAVVRDVGRVLGMPYGQVDKLAKLIPFEVG--MTLDKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG-M 538
            ++E  L  R + E+EVR LI+LA ++EGI RNVG HAGGV+IAP KL  F PLY + G  
Sbjct: 477  EQEELLRHRYQQEDEVRTLIDLALKLEGITRNVGKHAGGVVIAPEKLTRFTPLYCEAGEA 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
              +++Q+DKDD+E IGL+KFDFLGL TL+I+D+ I  I++        +++ +P++D++T
Sbjct: 537  EHLVTQFDKDDVEAIGLVKFDFLGLRTLTIIDRAIKNIQQAEQSDDPLNIHLIPIHDEET 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + LL    T AVFQLES+GMK+++K  +PD FE+I+AL++L+RPGP+   ++ +F  RKH
Sbjct: 597  FKLLSACKTTAVFQLESRGMKDLIKRLQPDCFEDIVALVALFRPGPLQSGMVDDFMNRKH 656

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G    +Y  P+ + +L  TYG++VYQEQVMQIAQ+L GYSLG AD+LRRA+GKKK  EM 
Sbjct: 657  GRAKVSYLHPKLEPILRPTYGVIVYQEQVMQIAQVLAGYSLGAADILRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
              R+ F  GA+++G++   +  IF+ +EKFAGYGFNKSH+ +YAL++Y TA+LK HY + 
Sbjct: 717  IQREIFCKGAVEHGVNLDLSMYIFDLMEKFAGYGFNKSHSASYALIAYQTAWLKAHYPAA 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            +MAA LS  MD T+K+   +++ +    L+IL P+IN S Y F  I       K I YGL
Sbjct: 777  YMAAVLSSDMDHTDKVVAFIEECV-ALKLTILAPDINQSNYAFKVI-----DKKTIAYGL 830

Query: 836  GAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G + IE I+  RK  G F +LFDF KR+D + INRR++++L+ +GAFD     R
Sbjct: 831  GAIKGAGFAAIETIIEIRKQNGEFKDLFDFCKRVDNRKINRRVLDALVKAGAFDKIGPHR 890

Query: 895  YMLVASIDVALKNAEKT--KKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              ++AS+D AL  AE+T   + + Q  L      N  +  + Y  VP +S+++ L  EK+
Sbjct: 891  ASVMASLDQALHQAEQTLRDESLGQHDLLGVAPTNTSE--IAYKNVPHFSEQERLQGEKE 948

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV--SGIITELKLKTTYRG-KILII 1009
             LG  LS H    Y  E+  F    ++EL+P  +  +  +GII  ++L  T RG ++ + 
Sbjct: 949  TLGLYLSGHPIHRYLNELSHFTTGRITELRPAKNKNIILAGIIAHVRLIQTKRGDRMAVA 1008

Query: 1010 VIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
             +DD +  ++V+     Y+K +  L +++L++V G++  D F  N R    +I  I  AR
Sbjct: 1009 TVDDATAQIDVLCFADNYQKYREFLTKDKLIVVEGEISLDEFSGNHRALCREILSIEQAR 1068

Query: 1070 ILYGKKFSVMFNRTFNISILKKILLRF-KCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
              Y K   +  +    I IL  +   F K + G   ++   + +S K  +    N++V+P
Sbjct: 1069 ERYAKCVKIQLSPE-KIDILSTLADLFEKYRGGRCRIMIDYMRESAKANLHLGENWQVRP 1127

Query: 1129 IDDLKLALINL 1139
             D L   L NL
Sbjct: 1128 SDALLHTLKNL 1138


>gi|89092103|ref|ZP_01165058.1| DNA polymerase III subunit alpha [Neptuniibacter caesariensis]
 gi|89083838|gb|EAR63055.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92]
          Length = 1163

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1162 (43%), Positives = 739/1162 (63%), Gaps = 39/1162 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+H+E+S++DGL+R+ +++ AA  +  PA+ +TD +N FG++KF+K+A   GIK
Sbjct: 4    PTFVHLRVHTEFSLVDGLVRVKELVAAAKKEGMPAVGMTDQTNFFGLVKFFKAATGNGIK 63

Query: 63   PIIGCDVWITNEIE-NKKPSRLLLLVKNNNGYLQLCELLSKAYIE--NINYGRAEIRIEW 119
            PI G D+W+ N  E   +P R+ LLV+N  GYL L EL+S+AY E  NI    A ++ EW
Sbjct: 64   PICGSDLWVENTDEPGGEPYRITLLVRNAQGYLNLMELISQAYAEGQNIIPDMALVKPEW 123

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            +E     +GLIALSGA  G++G A+   +    E   +RW  +F D+FY+E+QR  +   
Sbjct: 124  VEAKA--EGLIALSGAKKGEVGRAILAEKGQAPEVL-QRWMGVFKDSFYLEVQRTGRVGD 180

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A     P+VAT+ + F+K  +F AHEVR CI +   L +  R K+++++Q
Sbjct: 181  EQIVHGSVELAKQFGCPLVATNEVMFVKADDFEAHEVRVCINQSRTLEDPTRPKEYSEQQ 240

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F++Q EM  LF DIPSA+QN++EIAKRCN+ +E G   LPK+P P+ + ++DF    S 
Sbjct: 241  YFRSQREMEALFSDIPSALQNSVEIAKRCNIDIEIGTYYLPKYPIPEGMLMDDFFRKVSF 300

Query: 300  HGLKKRLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
             GL++RL  L    DPE Y  ++  Y  RL+FE++ II+M F GYFLIV DFI+W K N 
Sbjct: 301  DGLEERLEILLDRDDPE-YDAKRQEYIDRLEFELDIIIQMGFPGYFLIVMDFIKWGKENG 359

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+  ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI
Sbjct: 360  VPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVI 419

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YV   YG+DAVSQIVTFGTMAAK  +RDV RV    +   D +SKLIPF+PG  ITL  
Sbjct: 420  DYVARTYGRDAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADRLSKLIPFEPG--ITLKK 477

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A+ +EP L E I++ EE ++++++A ++EG+ R VG HAGGV+IAP+KL +F   Y  E 
Sbjct: 478  ALDQEPMLCEFIESSEEAQEIMDMAYKLEGVTRGVGKHAGGVVIAPTKLTDFAATYCDEE 537

Query: 538  MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLND 595
              G+++Q+DK D+EE GL+KFDFLGL TL+I+D  +  + +I  K     L+   + L D
Sbjct: 538  GNGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWALQTVNRIRDKQGEEPLDIALIDLED 597

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
            K T++LL+ A T AVFQLES GMK++++   P  FE+I+AL++L+RPGP+   ++ +F  
Sbjct: 598  KKTFDLLQAAETTAVFQLESSGMKDLVRRLLPSRFEDIVALVALFRPGPLQSGMVDDFIN 657

Query: 654  RKHGEY-FNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIG 707
            RKHG     +P P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+G
Sbjct: 658  RKHGRAEMAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMG 717

Query: 708  KKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAY 767
            KKK  EM + R  F +G+ + G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL+SY TA+
Sbjct: 718  KKKPEEMAKQRVSFLDGSEQNGIDRDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAW 777

Query: 768  LKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK 827
            LK HY + FMAA +S  M +T+K+ I +++  +  G+    PN+N  +Y F   +  +G 
Sbjct: 778  LKAHYPAPFMAAVMSSDMQNTDKVVIFIEEC-RNMGIPPALPNVNTGEYMF--TVNDEG- 833

Query: 828  HKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
               I YGLGAIKG G+  IEAIV  R + G F +LFDF +R+  K +N+R++ +L+ SGA
Sbjct: 834  --VIVYGLGAIKGVGEGPIEAIVEARAEGGEFNDLFDFCERVGAKKLNKRVLEALVRSGA 891

Query: 887  FDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKN-DDNNNLKEYLNYVKVPSWSK 943
             DC   +R +L  +I  ALK A++  K        LF   +  ++   Y +Y  V SW+ 
Sbjct: 892  VDCLGAERAVLWEAIPDALKAADQAAKNSDAGMFDLFGEVEAESDRCTYEDYRNVRSWTD 951

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT--VSGIITELKLKTT 1001
            K+ L  EK  LG  L+ H    YE E++ FI   + EL+P    T  ++G++ +L+LK T
Sbjct: 952  KERLAGEKDTLGLYLTGHPIDEYEAELKHFISRRIVELQPARGQTQKMAGLVVDLRLKKT 1011

Query: 1002 YRGK-ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             +G  +  + +DD S  ++V +    Y+  + ++ ++ +L+V G+V ED +   +++   
Sbjct: 1012 KKGDNLCFVTLDDRSARIDVTLFGDTYDAVRELVHKDAVLVVEGEVAEDHYSGGMKVRVN 1071

Query: 1061 KIFDINVARILYGKKFSVMFNRTF----NISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
            K+  I  AR  Y     V  N +      +  L+++L   K    LP    Y      + 
Sbjct: 1072 KVLSIPQARAQYASGVQVKCNESHFTGRRLKELQELLHAHKGNGSLPVKFRYA-RPDAEA 1130

Query: 1117 EMKFPLNYKVQPIDDLKLALIN 1138
             ++    ++VQ  DDL +AL++
Sbjct: 1131 TLRLGDEWQVQANDDLLIALMD 1152


>gi|344344048|ref|ZP_08774913.1| DNA polymerase III, alpha subunit [Marichromatium purpuratum 984]
 gi|343804332|gb|EGV22233.1| DNA polymerase III, alpha subunit [Marichromatium purpuratum 984]
          Length = 1189

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1166 (42%), Positives = 727/1166 (62%), Gaps = 52/1166 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HL +HSEYS++DGL+RI  +I+A A    PA+AITD  NLF +++FYKSA   G
Sbjct: 1    MEPSFVHLHVHSEYSLVDGLVRIKPLIKATAAAGMPAVAITDQCNLFALVRFYKSALGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+ I +  +  +P RL+LLV+N  GY  L  L+S+ Y++  + G A +  +W+
Sbjct: 61   IKPIAGADLLIRDPDDANRPFRLVLLVENATGYRNLTRLISRGYVDGQHQGVAMVERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E     +GLIALSG   GD+G A+ +G   +AE    RW  +F D +Y+E+ R  +P   
Sbjct: 121  EAAA--EGLIALSGGPEGDVGRALLDGDAALAERRLARWQAVFGDRYYLELIRTGRPREA 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              ++  + +A   + P+VAT+ ++FL   +F AHEVR CI +G  L + +R  +++ EQ 
Sbjct: 179  RLVESSVALALRCDAPVVATNDVRFLAAADFDAHEVRVCIHDGRTLDDPRRTPRYSPEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM +LF D+P A++N++EIAKRCNL+L  G   LP FP P+ + I  F   +S+ 
Sbjct: 239  LRSPEEMAELFSDLPEALENSVEIAKRCNLELTLGTHSLPDFPVPEGMTIETFFSEQSRQ 298

Query: 301  GLKKRLLNLYKD--PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ RL   +    PE  +  K+ Y +RL  E++ I+ M F GYFLIV+DFIQWAK + I
Sbjct: 299  GLEWRLGRTFDTSAPEFAEQRKV-YDERLAVELDVILGMGFPGYFLIVADFIQWAKEHGI 357

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DP+ ++LLFERFLNP R+SMPDFD+DFC EGRD VI 
Sbjct: 358  PVGPGRGSGAGSLVAYALKITDLDPIEHDLLFERFLNPERVSMPDFDVDFCMEGRDAVID 417

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV  +YG++AVSQI+TFGTMAAK  +RDVGRV+   Y F D ++K++PF+ G  +TL  A
Sbjct: 418  YVARKYGRNAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDRVAKMVPFELG--MTLEKA 475

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            + E   LA+  + +EE+R LI++A+++EG+ RN G HAGGV+IAP+ L +F PLY + G 
Sbjct: 476  LLESEDLADSYERDEEIRALIDMARKLEGLTRNAGKHAGGVVIAPTVLTDFAPLYCEAGG 535

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN---- 594
              +++QYDKDD+E++GL+KFDFLGL TL+I+D   + +K IN          L +N    
Sbjct: 536  DNLVTQYDKDDVEQVGLVKFDFLGLRTLTIID---WALKTINETRARHGEGPLDINLIDP 592

Query: 595  -DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNF 651
             D+  + LLK+  T AVFQLES+GMK ++K+ +PD FE++ AL++L+RPGP+   ++ +F
Sbjct: 593  HDETAFGLLKRCETTAVFQLESRGMKELIKKLQPDSFEDMTALVALFRPGPLQSGMVDDF 652

Query: 652  CRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RKHG     YP P  + +L  TYG+++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK
Sbjct: 653  IDRKHGRAEVAYPHPALEPILQPTYGVILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKK 712

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
             SEM + R  F+ G+++ G+    A  IF+ ++KFAGYGFNKSH+ AYAL+SY+T +LK 
Sbjct: 713  QSEMDKQRAIFEQGSVERGVELATATYIFDLMDKFAGYGFNKSHSAAYALVSYHTLWLKA 772

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA LS  MD+T+K+  L+ D  +   L++ PP IN S Y F   I  D   + 
Sbjct: 773  HYPAAFMAAVLSADMDNTDKVVTLI-DECRAMKLAVEPPTINRSAYRF--TISGD---RT 826

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            + YG+GAIKG G+  IE+++  R+ G  F +L+DF +RID    NRR++ SLI +GA D 
Sbjct: 827  VIYGMGAIKGVGEGAIESMIAARESGGPFRDLWDFCQRIDLHRANRRVLESLIRAGALDE 886

Query: 890  FNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKE---YLNYVKVPSWSKK 944
                R  L+A + +ALK AE+    +   Q  LF   ++    E    L     P W  +
Sbjct: 887  LGANRATLMAELPLALKFAEQQHATEAAGQGDLFGALEDAAAPEPDPQLAREPHPDWDDE 946

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-----------TVSGII 993
            Q L+ EK+ LG  L+ H    +E E+   + + +  L  T              TV G++
Sbjct: 947  QRLLGEKETLGLYLTGHPIDRFEEELGAMVGLRIGRLLETDRDQGRRGRDREKRTVVGLV 1006

Query: 994  TELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
              ++   T RG++  +V+DD +  +E  + + LYE+++++L+ +++L ++G +  D +  
Sbjct: 1007 VGVRHGKTQRGRMGSVVLDDRTGRIEATVFSDLYEESRHLLQSDQILAITGTLSFDEYRD 1066

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMFN---------RTFNISILKKILLRFKCKNGLPF 1104
            +  + A+ +     AR        +  +          +  +  L  +L  F+  + LP 
Sbjct: 1067 SWSLRADDVRTFEQARASRADHLMLELDLSDPAAHAAGSERVEALAALLGEFRDGD-LPV 1125

Query: 1105 VLYYCINKSIKYEMKFPLNYKVQPID 1130
             L Y      + E+     ++VQP D
Sbjct: 1126 RLRYR-RPGARGELVLGETWRVQPTD 1150


>gi|332160607|ref|YP_004297184.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
 gi|325664837|gb|ADZ41481.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
          Length = 1171

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1158 (43%), Positives = 752/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA++ G+K
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G +   E     + + FPD++Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 372  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL+DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  RK  G+F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT        +G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|123443470|ref|YP_001007443.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            enterocolitica 8081]
 gi|122090431|emb|CAL13299.1| DNA polymerase III, alpha chain [Yersinia enterocolitica subsp.
            enterocolitica 8081]
          Length = 1171

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1158 (43%), Positives = 752/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA++ G+K
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G +   +     + + FPD++Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFILRGNHAQVDQCLEFYQEHFPDSYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 372  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL+DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  RK  G+F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT        +G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|238751435|ref|ZP_04612927.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380]
 gi|238710302|gb|EEQ02528.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380]
          Length = 1171

 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1158 (43%), Positives = 749/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  G+K
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGVK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  DGLI LSG  +GD+G  +  G   + +     + + FPD++Y+E+ R  +P+    
Sbjct: 135  HK--DGLILLSGGRMGDVGKFILRGNQVLVDQCLEFYQQHFPDSYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ KSK GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKSKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPEI   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLELLFPDPEIRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 372  GRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSVFEDGAKNQGVNGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 790  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  RK  G F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPRWQEQIVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT        +G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIASRVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|420259704|ref|ZP_14762404.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            enterocolitica WA-314]
 gi|404512851|gb|EKA26686.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            enterocolitica WA-314]
          Length = 1160

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1158 (43%), Positives = 752/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA++ G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 64   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G +   +     + + FPD++Y+E+ R  +P+    
Sbjct: 124  HK--EGLILLSGGRMGDVGKFILRGNHAQVDQCLEFYQEHFPDSYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  RK  G+F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT        +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1132 ATWRVTPTDRLLIDLRTL 1149


>gi|386311560|ref|YP_006007616.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica Y11]
 gi|433547835|ref|ZP_20503886.1| DNA polymerase III alpha subunit [Yersinia enterocolitica IP 10393]
 gi|318606915|emb|CBY28413.1| DNA polymerase III alpha subunit [Yersinia enterocolitica subsp.
            palearctica Y11]
 gi|431791261|emb|CCO66926.1| DNA polymerase III alpha subunit [Yersinia enterocolitica IP 10393]
          Length = 1171

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1158 (43%), Positives = 752/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA++ G+K
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G +   E     + + FPD++Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 372  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL+DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+A++  RK  G+F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIKAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT        +G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|146308059|ref|YP_001188524.1| DNA polymerase III subunit alpha [Pseudomonas mendocina ymp]
 gi|145576260|gb|ABP85792.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp]
          Length = 1176

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1190 (43%), Positives = 750/1190 (63%), Gaps = 57/1190 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MTQAFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI G D+W+ +  E+   +RL LL  N  GY  L EL+S+ + E  +     I+ +W+
Sbjct: 61   VKPICGADIWMASAEEDGPLTRLTLLAMNPKGYRNLTELISRGWAEGQSNDLVIIQRDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +GLIALSGA  G++G+A+  G   +AE   R W  +FPD FY+E+QR  +    
Sbjct: 121  KDAA--EGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYLEVQRTSRVGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   +++A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVSLADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRHYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT +EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKTPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ +K  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +P
Sbjct: 299  GLEERLQVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V ++YG++AVSQI+TFG+MAAK  +RDV R     Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L E +KN+EE +++ +++ ++EGI+R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLREFLKNDEEAQEIWDMSLKLEGIVRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILD---KTIYFIKKINTKTTN--FSLNKLPLN 594
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+    +TI+ I+K +        +++ +PL+
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGAADEDLVNIDFIPLD 596

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            DK TY++L+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F 
Sbjct: 597  DKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFI 656

Query: 653  RRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG    +YP P       + VL  TYG+++YQEQVMQIAQ++ GY+LG AD+LRRA+
Sbjct: 657  NRKHGRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMAGYTLGGADMLRRAM 716

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA
Sbjct: 717  GKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTA 776

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA LS  M +T+K+ ILV++  +   L I PP++N+S++ F   +  DG
Sbjct: 777  WLKAHYPAPFMAAVLSADMHNTDKVVILVEEC-RNMKLRIDPPDVNVSEFKF--TVNDDG 833

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
               +I YGLGA+KG G+  +EAIV  R + G F +LFDF  R+D K IN+R + +LI SG
Sbjct: 834  ---RIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRTLEALIRSG 890

Query: 886  AFD---------------CFNEKRYMLVASIDVALKNAEKTKKFI--NQLSLFKND-DNN 927
            A D                 ++ R +L+AS++ A+++AE+T +      + LF       
Sbjct: 891  ALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGLFAEP 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K      K+ L  EK  LG  LS H    YE EIR+F    + ELKP    
Sbjct: 951  EADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVELKPARDT 1010

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             T++G+I  L++    +G K+  I +DD S  +E  +    +  N+ +L+ + L++V G+
Sbjct: 1011 QTIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFADAFASNQALLQNDALVVVEGE 1070

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  +  AR        V          LK   LR+      K +
Sbjct: 1071 VSNDDFSGGLRLRAKRVMSLEEARTGLADSLRVRVAS----EALKGDRLRWLAELCSKHR 1126

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +++ +  ++F   +++ P D L  AL +  G  N  + Y
Sbjct: 1127 GACPVTVDYSGDEA-RALLQFGEAWRIDPADTLIQALRDQFGRDNVFLHY 1175


>gi|385331010|ref|YP_005884961.1| DNA polymerase III subunit alpha [Marinobacter adhaerens HP15]
 gi|311694160|gb|ADP97033.1| DNA polymerase III, alpha subunit [Marinobacter adhaerens HP15]
          Length = 1145

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1143 (42%), Positives = 745/1143 (65%), Gaps = 34/1143 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL+R+  +I+  A    PA+ +T+ SN+  +++FYK+A   G+KPIIG D+W+ N  
Sbjct: 1    MVDGLVRVKPLIKRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKPIIGADLWLENPD 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
            E + P R+ LL ++N+GYL L E++S  Y E   +G+  I+ +WLE     +GLIALSG+
Sbjct: 61   EPENPFRITLLARDNDGYLNLTEIISLGYTEGQRFGKPIIQRKWLEARP--NGLIALSGS 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G A+  G+ ++A   AR W  ++PD++Y+E+QR  +P     +   + +A  + L
Sbjct: 119  RMGDVGKALMAGKPELARERARYWMDLYPDSYYLELQRTGRPGDEDCLHLSVELAGALGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + FL+  +F AHE R CI E   L + +R ++F+ +Q  ++  EMI+LF DIP
Sbjct: 179  PVVATNDVHFLEAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQYLRSADEMIELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLL-NLYKDPE 314
             AI+NT+EIA+RC++K+  G+  LP +P P  + ++D+    S+ GL++RL   L KD  
Sbjct: 239  EAIENTVEIARRCSVKVRMGEYFLPNYPIPDGMTMDDYFRKVSEEGLEERLAKTLSKDDP 298

Query: 315  IYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAY 374
             Y  ++  Y KRL FE++ II+M F GYFLIV DFI+WAKNN +PVGPGRGSGA SLVAY
Sbjct: 299  EYDAKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRGSGAGSLVAY 358

Query: 375  SLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVT 434
            +  ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI+Y   +YG++AVSQI+T
Sbjct: 359  AQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEYTAQKYGREAVSQIIT 418

Query: 435  FGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEE 494
            FGTMAAK  +RDV RV    Y   D +SK+IPF+PG  +TL  A+++EPQL E ++N+EE
Sbjct: 419  FGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEPG--MTLEKALEQEPQLVEFLENDEE 476

Query: 495  VRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIG 554
             +++ E+A ++EG+ RN G HAGGV+IAP+K+ +F PLY  +    +++Q+DK D+E+ G
Sbjct: 477  AQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGGSLVTQFDKGDVEDAG 536

Query: 555  LIKFDFLGLTTLSILDKTIYFIKKINTK--TTNFSLNKLPLNDKDTYNLLKKANTVAVFQ 612
            L+KFDFLGL TL+I+   +  I     K       +N++PL+D  ++++LKKA T AVFQ
Sbjct: 537  LVKFDFLGLRTLTIIKWALNMINPRREKKGMQPLDINEIPLDDVPSFDMLKKAETTAVFQ 596

Query: 613  LESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR--- 666
            LES+GMK++++  +PD  E++IAL++L+RPGP+   ++ +F  RKHG +  ++P P    
Sbjct: 597  LESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKHGRQPMSFPHPDYQY 656

Query: 667  --TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNG 724
               K VL  TYG+++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  EM + ++FF +G
Sbjct: 657  EGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGKKKPEEMAKQKQFFLDG 716

Query: 725  AIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLS 784
              + G++   A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA L+  
Sbjct: 717  CEQNGINTTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVLTAD 776

Query: 785  MDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKS 844
            M +T+K+  LV++  +   L +L P+++ S+Y F   +  +G   +I YGLGAIKG G+ 
Sbjct: 777  MQNTDKVVTLVEEC-RNMKLDLLVPDVSRSEYTF--TVNDEG---QIVYGLGAIKGLGEG 830

Query: 845  TIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDV 903
             I++IV  R  G  F ++FDF +R+D K +N+R + +LI SGA D     R  L+ASID 
Sbjct: 831  PIQSIVEGRGDGEPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDKLGASRAQLMASIDK 890

Query: 904  ALKNAEKTKK--FINQLSLFKN--DDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            A++ A++  +   +  + +F    +  +    Y +   V  W +KQ L  EK  LG  L+
Sbjct: 891  AVQQADQQSRNESVGMMDMFGEMLEAGDGGDPYEDVAGVREWPEKQRLKGEKDTLGLYLT 950

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCT-VSG-IITELKLKTTYRGKILIIVIDDNSNS 1017
             H F  YE E+R+F+   +++LKP  S   V+G ++ +  +KT     +  I +DD S  
Sbjct: 951  GHPFDEYEKEVRRFVRSSIADLKPNKSPQRVAGLVVAQRTMKTRTGSTMCFITLDDRSAR 1010

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY--GKK 1075
            +E  + ++ + +N+ +L+ +++++V G+V  D +   +++    + D+  AR  +  G K
Sbjct: 1011 IEATLFSEAFFENRELLQSDQVIVVEGQVSHDDYSGQMKMRVSSVMDVASARQQFSRGLK 1070

Query: 1076 FSVMFNRTFN--ISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLK 1133
             ++  ++  N  +  L   L  F+C     ++ Y     S + E+    +++VQP D+L 
Sbjct: 1071 LNLHADQLQNGLLEKLDTTLRPFRCDGSPVWIEYSSPEASTRIELG--ESWRVQPDDNLL 1128

Query: 1134 LAL 1136
            L L
Sbjct: 1129 LEL 1131


>gi|418242610|ref|ZP_12869117.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica PhRBD_Ye1]
 gi|351777944|gb|EHB20126.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica PhRBD_Ye1]
          Length = 1160

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1158 (43%), Positives = 752/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA++ G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 64   PIIGADFYVQSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G +   E     + + FPD++Y+E+ R  +P+    
Sbjct: 124  HK--EGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+A++  RK  G+F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIKAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT        +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1132 ATWRVTPTDRLLIDLRTL 1149


>gi|330504229|ref|YP_004381098.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01]
 gi|328918515|gb|AEB59346.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01]
          Length = 1176

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1190 (43%), Positives = 748/1190 (62%), Gaps = 57/1190 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MTQAFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI G D+W+ +  E+   +RL LL  N  GY  L EL+S+ + E  +     I+ +W+
Sbjct: 61   VKPICGADIWMASAEEDGPLTRLTLLAMNAKGYRNLTELISRGWAEGQSNDLVIIQRDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +GLIALSGA  G++G A+  G   +AE   R W  +FPD FY+E+QR  +    
Sbjct: 121  KDAA--EGLIALSGAREGEVGQALLGGDEVLAEARLREWMSVFPDRFYLEVQRTSRVGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVALADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSAEEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ +K  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKKQVYIDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V ++YG++AVSQI+TFG+MAAK  +RDV R     Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L E +KN+EE +++ +++ ++EG++R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLREFLKNDEEAQEIWDMSLKLEGVVRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILD---KTIYFIKKINTKTTN--FSLNKLPLN 594
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+    +TI+ I+K +  +     +++ +PL+
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGASDEELVNIDFIPLD 596

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            DK TY++L+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F 
Sbjct: 597  DKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFI 656

Query: 653  RRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG    +YP P       + VL  TYGI++YQEQVMQIAQ++GGY+LGQAD+LRRA+
Sbjct: 657  NRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMGGYTLGQADMLRRAM 716

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA
Sbjct: 717  GKKKPEEMAKQRGGFIEGCANNGIDAELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTA 776

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA LS  M +T+K+ ILV++  +   L I PP++N+S++ F   +  DG
Sbjct: 777  WLKAHYPAPFMAAVLSADMHNTDKVVILVEEC-RNMKLRIDPPDVNVSEFKF--TVNDDG 833

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
               +I YGLGA+KG G+  +EAIV  R + G F +LFDF  R+D + IN+R + +LI SG
Sbjct: 834  ---RIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLRRINKRTLEALIRSG 890

Query: 886  AFD---------------CFNEKRYMLVASIDVALKNAEKTKKFI--NQLSLFKND-DNN 927
            A D                 ++ R +L+AS++ A+++AE+T +      + LF       
Sbjct: 891  ALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGLFAEP 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K      K+ L  EK  LG  LS H    YE EIR+F    + ELKP    
Sbjct: 951  EADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVELKPARDT 1010

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             T++G+I  L++    +G K+  I +DD S  +E  +    +  N+ +L+ + L++V G+
Sbjct: 1011 QTIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFADAFASNQALLQNDALVVVEGE 1070

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  +  AR        V          LK   LR+      K K
Sbjct: 1071 VSNDDFSGGLRLRAKRVMSLEEARTGLADSLRVKVAS----EALKGDRLRWLAELCSKHK 1126

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++F   +++ P D L  AL +  G  N  + Y
Sbjct: 1127 GACPVTVDYS-GEEARALLQFGDAWRIDPADTLIQALRDQFGRDNVFLHY 1175


>gi|153947435|ref|YP_001400012.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP
            31758]
 gi|152958930|gb|ABS46391.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis IP
            31758]
          Length = 1160

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1158 (43%), Positives = 747/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 64   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FPD +Y+E+ R  +P+    
Sbjct: 124  HK--EGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ K+K GL
Sbjct: 242  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKAKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  RK  G+F  LFD   R+D K +N+RI+  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1132 ATWRVTPTDRLLIDLRTL 1149


>gi|344943142|ref|ZP_08782429.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96]
 gi|344260429|gb|EGW20701.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96]
          Length = 1164

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1162 (43%), Positives = 743/1162 (63%), Gaps = 46/1162 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HLRLH+E+S++DG+++I  +++  A    PA+A+T+ +NLF ++KFYK+A  +G
Sbjct: 1    MQPAFVHLRLHTEFSLVDGIVKIKPLVKRLAELNMPAIAVTEHANLFSLVKFYKAALGQG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IK I G DV + N  +   P RL LLV N+ GY+ L EL+SKAY E  + G   +R EW+
Sbjct: 61   IKAIAGSDVLVFNPEDPATPYRLTLLVNNHAGYITLTELISKAYQEGQHQGVPMLRQEWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E N   +GLIALSGA  G IG A+    +D A+  A  W  +F  +FY+E+QR  +P   
Sbjct: 121  EAN--HNGLIALSGAMSGCIGKALLAENHDAAKRLAEFWGALFEQSFYLELQRVGKPEEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   + +A    LP+VAT+ ++F+ + +F AHEVR CI +  +L +T+R K +T +Q 
Sbjct: 179  RYIAAAVELALATGLPVVATNDVRFVYQQDFAAHEVRVCINQSRVLDDTRRPKDYTDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF DIP A++NT+EIAKRCNL+L  GK  LP FP P+ +N+ +F+  +S  
Sbjct: 239  LRSIEEMQALFADIPEALENTVEIAKRCNLQLTLGKNFLPDFPVPEGMNLGEFMAEESMK 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL +     +    E  R Y  RL FE++ I +M F GYF+IV+DFIQWAKNN IP
Sbjct: 299  GLEERLQHYPAVGKGTDEENRRIYYDRLDFELKMITQMGFPGYFMIVADFIQWAKNNLIP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DP+ ++LLFERFLNP R+SMPDFD+DFC + RD VI Y
Sbjct: 359  VGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   YG+D V+QI+T+G+MAAK  IRDVGRVL   Y F D +SKL+PF+ G  +TL+ A+
Sbjct: 419  VARHYGRDHVAQIITYGSMAAKAVIRDVGRVLGFGYGFVDRLSKLVPFEIG--MTLTKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            K+ P+L +    EEEV+ LI++A  +EG  RN G HAGGV+I+P+KL +F PLY  +   
Sbjct: 477  KDSPELKQLYDTEEEVKALIDMALSLEGTSRNAGKHAGGVVISPTKLTDFTPLYCDQDGN 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS-----LNKLPLN 594
             +++Q+DKDD+E +GL+KFDFLGL TL+I+D   + ++ IN K          +  +P +
Sbjct: 537  NLVTQFDKDDVEAVGLVKFDFLGLRTLTIID---WALQDINAKHKQLGKPLVDITIIPRD 593

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D D+Y LL  A T AVFQLES+GMK ++K+ KPD F++IIAL++L+RPGP++  ++ ++ 
Sbjct: 594  DPDSYKLLTAAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLESGMVDDYI 653

Query: 653  RRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
              KHG    Y  P  + +L  T G+++YQEQVMQIA+ +  Y+LG AD+LRRA+GKKK  
Sbjct: 654  NVKHGAKAEYAHPLLEPILKPTNGVILYQEQVMQIAREMALYTLGGADMLRRAMGKKKPE 713

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GAI+  + +  A  +F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY
Sbjct: 714  EMAKERDKFTAGAIENQVDEKIATYVFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHY 773

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
               FMAA +S  MD+T+K+ IL+++  K   L + PP IN+SKY F     +D  H  I 
Sbjct: 774  QPEFMAAVMSADMDNTDKVVILIEEC-KQMKLEVCPPTINVSKYKF---TVNDAGH--IV 827

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGA+KG G++ IE ++ ER+  G F+ L+D  KR+D +  NRR++ +LI +GAFD F+
Sbjct: 828  YGLGALKGVGEAAIEEMLVEREANGLFSGLYDLCKRVDLRKFNRRVLEALIRAGAFDEFD 887

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK---NDDNNNLKEYLNYVKVPSWSKKQE 946
            + R   +A +   LK AE+  K     Q  LF    N +N +  +  N V  P WS+ + 
Sbjct: 888  DNRAGHLAELPTVLKVAEQHGKNAQTGQNDLFGLAVNAENADDVDAYNTVVEP-WSENER 946

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQF----IPIYLSELKPTYS----CTVSGIITELKL 998
            L  EK VLG  L+ H    YE E+RQF    I   L+ ++ + S       +G++ E++ 
Sbjct: 947  LAAEKLVLGLFLTGHPINQYEAELRQFTNGTIESLLANVERSKSRKMEARTAGLVVEVRT 1006

Query: 999  KTTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057
            + T  GK++    IDD +  +E+    ++Y+K ++I   + LLI  G +  D +L  +R+
Sbjct: 1007 RQTKNGKVMGFATIDDRTGRLEIAAFGEVYDKYRSIFTRDSLLIAEGALGVDDYLGTLRL 1066

Query: 1058 NAEKIFDINVARILYGKKFSVMFNRTFN-------ISILKKILLRFKCKNGLPFVLYYCI 1110
              EK++ +  AR +Y +   ++++   N       ++ L  +L  FK   G P  + Y  
Sbjct: 1067 TVEKLYSMEQAREVYARSIQLVWHAADNESEGHDFVTKLIAVLEPFK-GGGCPVGISYT- 1124

Query: 1111 NKSIKYEMKFPLNYKVQPIDDL 1132
            +K  K  ++    ++VQP D+L
Sbjct: 1125 SKVAKASLQLGDEWRVQPTDEL 1146


>gi|421503986|ref|ZP_15950930.1| DNA polymerase III subunit alpha [Pseudomonas mendocina DLHK]
 gi|400345087|gb|EJO93453.1| DNA polymerase III subunit alpha [Pseudomonas mendocina DLHK]
          Length = 1176

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1190 (43%), Positives = 749/1190 (62%), Gaps = 57/1190 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MTQAFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI G D+W+ +  E+   +RL LL  N  GY  L EL+S+ + E  +     I+ +W+
Sbjct: 61   VKPICGADIWMASAEEDGPLTRLTLLAMNPKGYRNLTELISRGWAEGQSNDLVIIQRDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +GLIALSGA  G++G+A+  G   +AE   R W  +FPD FY+E+QR  +    
Sbjct: 121  KDAA--EGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYLEVQRTSRVGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVALADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRHYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT +EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKTPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ +K  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +P
Sbjct: 299  GLEERLQVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V ++YG++AVSQI+TFG+MAAK  +RDV R     Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L E +KN+EE +++ +++ ++EGI+R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLREFLKNDEEAQEIWDMSLKLEGIVRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILD---KTIYFIKKINTKTTN--FSLNKLPLN 594
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+    +TI+ I+K +        +++ +PL+
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGAADEDLVNIDFIPLD 596

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            DK TY++L+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F 
Sbjct: 597  DKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFI 656

Query: 653  RRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG    +YP P       + VL  TYG+++YQEQVMQIAQ++ GY+LG AD+LRRA+
Sbjct: 657  NRKHGRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMAGYTLGGADMLRRAM 716

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA
Sbjct: 717  GKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTA 776

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA LS  M +T+K+ ILV++  +   L I PP++N+S++ F   +  DG
Sbjct: 777  WLKAHYPAPFMAAVLSADMHNTDKVVILVEEC-RNMKLRIDPPDVNVSEFKF--TVNDDG 833

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
               +I YGLGA+KG G+  +EAIV  R + G F +LFDF  R+D K IN+R + +LI SG
Sbjct: 834  ---RIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRTLEALIRSG 890

Query: 886  AFD---------------CFNEKRYMLVASIDVALKNAEKTKKFI--NQLSLFKND-DNN 927
            A D                 ++ R +L+AS++ A+++AE+T +      + LF       
Sbjct: 891  ALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGLFAEP 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K      K+ L  EK  LG  LS H    YE EIR+F    + ELKP    
Sbjct: 951  EADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVELKPARDT 1010

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             T++G+I  L++    +G K+  I +DD S  +E  +    +  N+ +L+ + L++V G+
Sbjct: 1011 QTIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFADAFASNQALLQNDALVVVEGE 1070

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  +  AR        V          LK   LR+      K +
Sbjct: 1071 VSNDDFSGGLRLRAKRVMSLEEARTGLADSLRVRVAS----EALKGDRLRWLAELCSKHR 1126

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +++ +  ++F   +++ P D L  AL +  G  N  + Y
Sbjct: 1127 GACPVTVDYSGDEA-RALLQFGDAWRIDPADTLIQALRDQFGRDNVFLHY 1175


>gi|238754792|ref|ZP_04616143.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473]
 gi|238706952|gb|EEP99318.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473]
          Length = 1173

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1158 (43%), Positives = 752/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALA+TD +NL G++KFY SA+  GIK
Sbjct: 17   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAVTDFTNLCGLVKFYGSAHGAGIK 76

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +++   + ++L +L KNN GY  L  L+S+AY          I  +WL  
Sbjct: 77   PIIGADFCVQSDMLGDELAQLTVLAKNNQGYQNLTLLISEAYQRGYGPAGPTIDRDWL-- 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K+++GLI LSG  +GD+G  +  G     +     + + FPD++Y+E+ R  +P+    
Sbjct: 135  IKHREGLILLSGGRMGDVGKFLVRGNQSQVDQCLDFYQEYFPDSYYLELIRTGRPDEENY 194

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  +LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 195  LHAAVALATARSLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 254

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KS+ GL
Sbjct: 255  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSRQGL 313

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 314  EERLEFLFPDPEVRAQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 373

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 374  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 433

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P +PG  +TL  A + E
Sbjct: 434  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPEPG--MTLEKAFEAE 491

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 492  PQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 551

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 552  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFD 611

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 612  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 671

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 672  EALSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 731

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 732  EMAKQRSVFEDGAKSQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 791

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 792  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 845

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  R + G+F +LFD   R+D K +NRRI+  L+ SGAFD   
Sbjct: 846  YGIGAIKGVGEGPIEAMLEARNEGGYFKDLFDLCARVDTKKLNRRILEKLVMSGAFDRLG 905

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q  +F    +   +   +Y  VP W ++  L  
Sbjct: 906  PHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPHWQEQVVLDG 965

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++T  ++  T RG 
Sbjct: 966  ERETLGLYLTGHPITQYLKEIERYTGGLRLKDMHPTDRGKMTTAVGLVTAARVMVTKRGN 1025

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++ D
Sbjct: 1026 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTARELMD 1085

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1086 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1144

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1145 ATWRVTPTDRLLIDLRTL 1162


>gi|170023330|ref|YP_001719835.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis YPIII]
 gi|169749864|gb|ACA67382.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis YPIII]
          Length = 1171

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1158 (43%), Positives = 747/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FPD +Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ K+K GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKAKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 372  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINVRRAKTGLEPIDIASIPLEDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  RK  G+F  LFD   R+D K +N+RI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|399544469|ref|YP_006557777.1| DNA polymerase III subunit alpha [Marinobacter sp. BSs20148]
 gi|399159801|gb|AFP30364.1| DNA polymerase III subunit alpha [Marinobacter sp. BSs20148]
          Length = 1161

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1157 (41%), Positives = 751/1157 (64%), Gaps = 40/1157 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+R+  +I+       PA+ +T+ SN+F +++FYK+A   G+KPI
Sbjct: 6    FVHLRIHSEHSLVDGLVRVKPLIKRVVELGMPAVGLTEQSNMFSLVRFYKAALGAGVKPI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG D+W  N  E + P R+ LL  NN+GYL L E++S  Y E   +G+  I+ EWLE   
Sbjct: 66   IGADLWFENLDEPESPFRITLLASNNDGYLNLTEIVSLGYTEGQRFGKPIIKREWLEARS 125

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
               GLI LSG  +GD+  A+   +  +A + AR W  ++P +FY+E+QR  +      + 
Sbjct: 126  --QGLIMLSGGKMGDVAKAMLADKPKLARDRARYWRDLYPGSFYLELQRTGRAGDEDCLH 183

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ + LP+VAT+ + F+   +F AHE R CI E   L + +R ++F+ +Q+ ++ 
Sbjct: 184  LNVALAAELGLPVVATNDVHFIYAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQHLRSA 243

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EMI+LF DIP A++NT+ IA+RC++ +  G+  LP +P P+ + ++D+    S+ GL+ 
Sbjct: 244  EEMIELFADIPEAVENTLAIARRCSVTVRMGEYFLPNYPVPEGMTMDDYFRRVSEEGLED 303

Query: 305  RLL-NLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            RL   L KD   Y  ++  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGPG
Sbjct: 304  RLAKTLPKDDPDYDRKRQAYYDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGPG 363

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+  ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI YV ++
Sbjct: 364  RGSGAGSLVAYAQLITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIAYVAEK 423

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL+ A+++EP
Sbjct: 424  YGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEVG--MTLAKAVEQEP 481

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
             L E +  +EE +++ E+A ++EG+ RN G HAGGV+IAP+K+ +F PLY  +    +++
Sbjct: 482  SLKEFLAQDEEAQEIWEMAIKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDDGGSLVT 541

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDKDT 598
            Q+DK+D+E+ GL+KFDFLGL TL+I+D   + +K IN +          ++++PL+D  +
Sbjct: 542  QFDKNDVEDAGLVKFDFLGLRTLTIID---WALKMINPRREKRGLKPLDISEIPLDDPAS 598

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + +LKKA T AVFQLES+GMK++++  +PD  E++IAL++L+RPGP+   ++ +F  RKH
Sbjct: 599  FVMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKH 658

Query: 657  GEY---FNYPD---PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G+    F +PD      K VL  TYG+++YQEQVMQIAQ++GGYSLG AD+LRRA+GKKK
Sbjct: 659  GKQPMSFPHPDFQYEGLKPVLEPTYGVILYQEQVMQIAQVMGGYSLGNADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + ++FF +G     + K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK+
Sbjct: 719  PEEMAKQKQFFLDGCAGNNIDKALAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKS 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ FMAA L+  M +T+K+  LV++  ++  L ++ P+++ S+Y F      DG   +
Sbjct: 779  HYTAEFMAAVLTADMQNTDKVVTLVEEC-RSLKLDLVLPDVSTSEYAF--TANDDG---Q 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            + YGLGAIKG G+  I++IVT RK  G FT+LFDF +R+D K +N+R + ++I +GA D 
Sbjct: 833  VVYGLGAIKGLGEGPIDSIVTARKENGPFTDLFDFCRRVDLKKVNKRALEAMIRAGAMDK 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKN--DDNNNLKEYLNYVKVPSWSKKQ 945
                R  L+ASI+ A+  A +  +      + +F +  +   ++  Y +   +  W +K+
Sbjct: 893  LGAGRAQLMASIEKAILQAGQQSRNEAAGMVDMFGDMLETAMDVDAYSDVADIREWPEKK 952

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSG-IITELKLKTTYR 1003
             L  EK  LG  L+ H F  YE E+R+F+   +++LKP  S   V+G ++ +  +KT   
Sbjct: 953  RLKGEKDTLGLYLTGHPFDEYEREVRRFVRSSIADLKPNKSPQRVAGLVVAQRTMKTRTG 1012

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              +  + +DD S  +E  + ++ + +N+ +L+ +++++V G+V  D +   I++    + 
Sbjct: 1013 STMCFVTLDDRSGRIEATLFSEAFFENRELLQSDQVIVVEGQVSHDDYSGQIKMRVNSVM 1072

Query: 1064 DINVARILYGKKFSVMFNRT----FNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
            D+  AR  + +   +  N++      +  L+++L   +C+    ++ Y     S + E+ 
Sbjct: 1073 DVASARQQFSRGLQLKLNQSQLDNGLLDSLEQLLAPHRCEGSPVWIEYTSPAASTRIELG 1132

Query: 1120 FPLNYKVQPIDDLKLAL 1136
               +++V+P D L L L
Sbjct: 1133 S--SWRVEPNDSLLLEL 1147


>gi|238787220|ref|ZP_04631019.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641]
 gi|238724482|gb|EEQ16123.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641]
          Length = 1160

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1158 (43%), Positives = 750/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA++ GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIN 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FP+++Y+E+ R  +P+    
Sbjct: 124  HK--EGLILLSGGRMGDVGKFILRGNQVQVDQCLEFYQEHFPNSYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEDGAKSQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  RK  G+F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT        +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1132 ATWRVTPTDRLLIDLRTL 1149


>gi|229837766|ref|ZP_04457926.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A]
 gi|229840988|ref|ZP_04461147.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. PEXU2]
 gi|229843089|ref|ZP_04463239.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. India 195]
 gi|229903544|ref|ZP_04518657.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516]
 gi|384141074|ref|YP_005523776.1| DNA polymerase III subunit alpha [Yersinia pestis A1122]
 gi|384413689|ref|YP_005623051.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Medievalis
            str. Harbin 35]
 gi|420550985|ref|ZP_15048506.1| DNA polymerase III subunit alpha [Yersinia pestis PY-02]
 gi|420556493|ref|ZP_15053383.1| DNA polymerase III subunit alpha [Yersinia pestis PY-03]
 gi|420562082|ref|ZP_15058278.1| DNA polymerase III subunit alpha [Yersinia pestis PY-04]
 gi|420567106|ref|ZP_15062817.1| DNA polymerase III subunit alpha [Yersinia pestis PY-05]
 gi|420572744|ref|ZP_15067936.1| DNA polymerase III subunit alpha [Yersinia pestis PY-06]
 gi|420578080|ref|ZP_15072766.1| DNA polymerase III subunit alpha [Yersinia pestis PY-07]
 gi|420583438|ref|ZP_15077641.1| DNA polymerase III subunit alpha [Yersinia pestis PY-08]
 gi|420588590|ref|ZP_15082283.1| DNA polymerase III subunit alpha [Yersinia pestis PY-09]
 gi|420593894|ref|ZP_15087063.1| DNA polymerase III subunit alpha [Yersinia pestis PY-10]
 gi|420599570|ref|ZP_15092137.1| DNA polymerase III subunit alpha [Yersinia pestis PY-11]
 gi|420610405|ref|ZP_15101878.1| DNA polymerase III subunit alpha [Yersinia pestis PY-13]
 gi|420615730|ref|ZP_15106595.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-14]
 gi|420621109|ref|ZP_15111336.1| DNA polymerase III subunit alpha [Yersinia pestis PY-15]
 gi|420626177|ref|ZP_15115929.1| DNA polymerase III subunit alpha [Yersinia pestis PY-16]
 gi|420631370|ref|ZP_15120630.1| DNA polymerase III subunit alpha [Yersinia pestis PY-19]
 gi|420636474|ref|ZP_15125196.1| DNA polymerase III subunit alpha [Yersinia pestis PY-25]
 gi|420642048|ref|ZP_15130228.1| DNA polymerase III subunit alpha [Yersinia pestis PY-29]
 gi|420647200|ref|ZP_15134946.1| DNA polymerase III subunit alpha [Yersinia pestis PY-32]
 gi|420652847|ref|ZP_15140014.1| DNA polymerase III subunit alpha [Yersinia pestis PY-34]
 gi|420658362|ref|ZP_15144975.1| DNA polymerase III subunit alpha [Yersinia pestis PY-36]
 gi|420663684|ref|ZP_15149732.1| DNA polymerase III subunit alpha [Yersinia pestis PY-42]
 gi|420668644|ref|ZP_15154226.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-45]
 gi|420673961|ref|ZP_15159066.1| DNA polymerase III subunit alpha [Yersinia pestis PY-46]
 gi|420679506|ref|ZP_15164096.1| DNA polymerase III subunit alpha [Yersinia pestis PY-47]
 gi|420684753|ref|ZP_15168800.1| DNA polymerase III subunit alpha [Yersinia pestis PY-48]
 gi|420695714|ref|ZP_15178444.1| DNA polymerase III subunit alpha [Yersinia pestis PY-53]
 gi|420701114|ref|ZP_15183070.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-54]
 gi|420707122|ref|ZP_15187949.1| DNA polymerase III subunit alpha [Yersinia pestis PY-55]
 gi|420712435|ref|ZP_15192740.1| DNA polymerase III subunit alpha [Yersinia pestis PY-56]
 gi|420717839|ref|ZP_15197477.1| DNA polymerase III subunit alpha [Yersinia pestis PY-58]
 gi|420723442|ref|ZP_15202293.1| DNA polymerase III subunit alpha [Yersinia pestis PY-59]
 gi|420734119|ref|ZP_15211873.1| DNA polymerase III subunit alpha [Yersinia pestis PY-61]
 gi|420739590|ref|ZP_15216804.1| DNA polymerase III subunit alpha [Yersinia pestis PY-63]
 gi|420750716|ref|ZP_15226453.1| DNA polymerase III subunit alpha [Yersinia pestis PY-65]
 gi|420755981|ref|ZP_15231027.1| DNA polymerase III subunit alpha [Yersinia pestis PY-66]
 gi|420761817|ref|ZP_15235780.1| DNA polymerase III subunit alpha [Yersinia pestis PY-71]
 gi|420767078|ref|ZP_15240530.1| DNA polymerase III subunit alpha [Yersinia pestis PY-72]
 gi|420772067|ref|ZP_15245011.1| DNA polymerase III subunit alpha [Yersinia pestis PY-76]
 gi|420777479|ref|ZP_15249849.1| DNA polymerase III subunit alpha [Yersinia pestis PY-88]
 gi|420788358|ref|ZP_15259404.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-90]
 gi|420793832|ref|ZP_15264345.1| DNA polymerase III subunit alpha [Yersinia pestis PY-91]
 gi|420798951|ref|ZP_15268950.1| DNA polymerase III subunit alpha [Yersinia pestis PY-92]
 gi|420804299|ref|ZP_15273761.1| DNA polymerase III subunit alpha [Yersinia pestis PY-93]
 gi|420809537|ref|ZP_15278506.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-94]
 gi|420815243|ref|ZP_15283618.1| DNA polymerase III subunit alpha [Yersinia pestis PY-95]
 gi|420820428|ref|ZP_15288313.1| DNA polymerase III subunit alpha [Yersinia pestis PY-96]
 gi|420825525|ref|ZP_15292868.1| DNA polymerase III subunit alpha [Yersinia pestis PY-98]
 gi|420831286|ref|ZP_15298075.1| DNA polymerase III subunit alpha [Yersinia pestis PY-99]
 gi|420836147|ref|ZP_15302461.1| DNA polymerase III subunit alpha [Yersinia pestis PY-100]
 gi|420846907|ref|ZP_15312191.1| DNA polymerase III subunit alpha [Yersinia pestis PY-102]
 gi|420852326|ref|ZP_15316964.1| DNA polymerase III subunit alpha [Yersinia pestis PY-103]
 gi|420857840|ref|ZP_15321654.1| DNA polymerase III subunit alpha [Yersinia pestis PY-113]
 gi|421762509|ref|ZP_16199306.1| DNA polymerase III subunit alpha [Yersinia pestis INS]
 gi|229679314|gb|EEO75417.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516]
 gi|229689965|gb|EEO82024.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. India 195]
 gi|229697354|gb|EEO87401.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. PEXU2]
 gi|229704143|gb|EEO91155.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A]
 gi|320014193|gb|ADV97764.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Medievalis
            str. Harbin 35]
 gi|342856203|gb|AEL74756.1| DNA polymerase III subunit alpha [Yersinia pestis A1122]
 gi|391431142|gb|EIQ92752.1| DNA polymerase III subunit alpha [Yersinia pestis PY-02]
 gi|391433544|gb|EIQ94871.1| DNA polymerase III subunit alpha [Yersinia pestis PY-03]
 gi|391446199|gb|EIR06262.1| DNA polymerase III subunit alpha [Yersinia pestis PY-04]
 gi|391446807|gb|EIR06802.1| DNA polymerase III subunit alpha [Yersinia pestis PY-05]
 gi|391450704|gb|EIR10305.1| DNA polymerase III subunit alpha [Yersinia pestis PY-06]
 gi|391462282|gb|EIR20809.1| DNA polymerase III subunit alpha [Yersinia pestis PY-07]
 gi|391463622|gb|EIR22014.1| DNA polymerase III subunit alpha [Yersinia pestis PY-08]
 gi|391465612|gb|EIR23791.1| DNA polymerase III subunit alpha [Yersinia pestis PY-09]
 gi|391479016|gb|EIR35858.1| DNA polymerase III subunit alpha [Yersinia pestis PY-10]
 gi|391480117|gb|EIR36822.1| DNA polymerase III subunit alpha [Yersinia pestis PY-11]
 gi|391494234|gb|EIR49488.1| DNA polymerase III subunit alpha [Yersinia pestis PY-13]
 gi|391495392|gb|EIR50495.1| DNA polymerase III subunit alpha [Yersinia pestis PY-15]
 gi|391498149|gb|EIR52942.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-14]
 gi|391510227|gb|EIR63784.1| DNA polymerase III subunit alpha [Yersinia pestis PY-16]
 gi|391510980|gb|EIR64435.1| DNA polymerase III subunit alpha [Yersinia pestis PY-19]
 gi|391515106|gb|EIR68155.1| DNA polymerase III subunit alpha [Yersinia pestis PY-25]
 gi|391525726|gb|EIR77841.1| DNA polymerase III subunit alpha [Yersinia pestis PY-29]
 gi|391528594|gb|EIR80396.1| DNA polymerase III subunit alpha [Yersinia pestis PY-34]
 gi|391529461|gb|EIR81145.1| DNA polymerase III subunit alpha [Yersinia pestis PY-32]
 gi|391542274|gb|EIR92749.1| DNA polymerase III subunit alpha [Yersinia pestis PY-36]
 gi|391544009|gb|EIR94274.1| DNA polymerase III subunit alpha [Yersinia pestis PY-42]
 gi|391544968|gb|EIR95114.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-45]
 gi|391559100|gb|EIS07915.1| DNA polymerase III subunit alpha [Yersinia pestis PY-46]
 gi|391559665|gb|EIS08399.1| DNA polymerase III subunit alpha [Yersinia pestis PY-47]
 gi|391561169|gb|EIS09724.1| DNA polymerase III subunit alpha [Yersinia pestis PY-48]
 gi|391574844|gb|EIS21671.1| DNA polymerase III subunit alpha [Yersinia pestis PY-53]
 gi|391586667|gb|EIS31945.1| DNA polymerase III subunit alpha [Yersinia pestis PY-55]
 gi|391587201|gb|EIS32399.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-54]
 gi|391590205|gb|EIS34989.1| DNA polymerase III subunit alpha [Yersinia pestis PY-56]
 gi|391603950|gb|EIS47065.1| DNA polymerase III subunit alpha [Yersinia pestis PY-58]
 gi|391605181|gb|EIS48099.1| DNA polymerase III subunit alpha [Yersinia pestis PY-59]
 gi|391618011|gb|EIS59499.1| DNA polymerase III subunit alpha [Yersinia pestis PY-61]
 gi|391618567|gb|EIS59969.1| DNA polymerase III subunit alpha [Yersinia pestis PY-63]
 gi|391629642|gb|EIS69544.1| DNA polymerase III subunit alpha [Yersinia pestis PY-65]
 gi|391641007|gb|EIS79483.1| DNA polymerase III subunit alpha [Yersinia pestis PY-71]
 gi|391643644|gb|EIS81796.1| DNA polymerase III subunit alpha [Yersinia pestis PY-72]
 gi|391643736|gb|EIS81873.1| DNA polymerase III subunit alpha [Yersinia pestis PY-66]
 gi|391653282|gb|EIS90264.1| DNA polymerase III subunit alpha [Yersinia pestis PY-76]
 gi|391659116|gb|EIS95452.1| DNA polymerase III subunit alpha [Yersinia pestis PY-88]
 gi|391666087|gb|EIT01599.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-90]
 gi|391672032|gb|EIT06913.1| DNA polymerase III subunit alpha [Yersinia pestis PY-91]
 gi|391684258|gb|EIT17956.1| DNA polymerase III subunit alpha [Yersinia pestis PY-93]
 gi|391685608|gb|EIT19126.1| DNA polymerase III subunit alpha [Yersinia pestis PY-92]
 gi|391686535|gb|EIT19945.1| DNA polymerase III, alpha subunit [Yersinia pestis PY-94]
 gi|391698280|gb|EIT30602.1| DNA polymerase III subunit alpha [Yersinia pestis PY-95]
 gi|391701931|gb|EIT33880.1| DNA polymerase III subunit alpha [Yersinia pestis PY-96]
 gi|391702872|gb|EIT34708.1| DNA polymerase III subunit alpha [Yersinia pestis PY-98]
 gi|391712376|gb|EIT43262.1| DNA polymerase III subunit alpha [Yersinia pestis PY-99]
 gi|391718733|gb|EIT48950.1| DNA polymerase III subunit alpha [Yersinia pestis PY-100]
 gi|391729919|gb|EIT58852.1| DNA polymerase III subunit alpha [Yersinia pestis PY-102]
 gi|391732837|gb|EIT61355.1| DNA polymerase III subunit alpha [Yersinia pestis PY-103]
 gi|391736490|gb|EIT64508.1| DNA polymerase III subunit alpha [Yersinia pestis PY-113]
 gi|411176715|gb|EKS46730.1| DNA polymerase III subunit alpha [Yersinia pestis INS]
          Length = 1160

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1158 (43%), Positives = 746/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 64   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FPD +Y+E+ R  +P+    
Sbjct: 124  HK--EGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ K+K GL
Sbjct: 242  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKAKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  RK  G+F  LFD   R+D K +N+RI+  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y    ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYASGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1132 ATWRVTPTDRLLIDLRTL 1149


>gi|51597303|ref|YP_071494.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP
            32953]
 gi|186896408|ref|YP_001873520.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis PB1/+]
 gi|51590585|emb|CAH22226.1| DNA polymerase III, alpha chain [Yersinia pseudotuberculosis IP
            32953]
 gi|186699434|gb|ACC90063.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 1171

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1158 (43%), Positives = 747/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FPD +Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ K+K GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKAKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 372  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  RK  G+F  LFD   R+D K +N+RI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|429212290|ref|ZP_19203455.1| DNA polymerase III subunit alpha [Pseudomonas sp. M1]
 gi|428156772|gb|EKX03320.1| DNA polymerase III subunit alpha [Pseudomonas sp. M1]
          Length = 1175

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1189 (43%), Positives = 756/1189 (63%), Gaps = 56/1189 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLHSEYS++DGL+R+  + +A A    PA+AITD SN+  ++KFYK+A   G
Sbjct: 1    MTASFVHLRLHSEYSLVDGLVRVKPLCKAVAGAGMPAVAITDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LLV N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 61   IKPICGADIWLASRDEDGPLSRLSLLVMNAKGYRNLTELISRGWQEGQRNGEIIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALS A  G+IG A+ +G + +A++    W ++FPD FY+E+QR  + N  
Sbjct: 121  KEAA--EGLIALSAAKEGEIGHALLDGEDALADSLLAEWMEVFPDRFYLEVQRTARVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALAERSGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP-KNININDFLISKSK 299
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FP P + ++IND+L   S 
Sbjct: 239  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPNFPIPIEGMDINDYLRHVSY 298

Query: 300  HGLKKRLLNLY-KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
             GL++RL  L  KD   Y+ ++  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +
Sbjct: 299  EGLEERLAVLLPKDTPNYEEKRQVYVDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV D YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVADAYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADKLSKMIPFEVG--MTLDKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K++EE +++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E  
Sbjct: 477  FEQEEMLRDFLKSDEEAQEIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL---NKLPLND 595
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +I  K  + +L   +++PL+D
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIIHRIQRKAGDENLVDIDRIPLDD 596

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
            K TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  
Sbjct: 597  KKTYDLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFIN 656

Query: 654  RKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIG 707
            RKHG E  +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+G
Sbjct: 657  RKHGREEISYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMG 716

Query: 708  KKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAY 767
            KKK  EM + R  F  G    G+ K  A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+
Sbjct: 717  KKKPEEMAKQRGGFIEGCANNGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAW 776

Query: 768  LKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK 827
            LKTH+++ FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ D  
Sbjct: 777  LKTHWAAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDD-- 831

Query: 828  HKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
              +I YGLGAIKG G+  +EAI   R + G F +LFDF  RID K IN+R +++LI +GA
Sbjct: 832  -NQIVYGLGAIKGVGEGPVEAITECRAEGGPFKDLFDFCDRIDLKRINKRTLDALIRAGA 890

Query: 887  FD----CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNN 928
             D     F+E+           R +L+AS++ A+K AE+T +  +   + LF        
Sbjct: 891  LDRLGPYFHEEPKAYLADIDRNRAVLLASMEEAIKAAEQTSRSHDSGHMDLFGGLFAEPE 950

Query: 929  LKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC- 987
               Y N+ K    + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     
Sbjct: 951  ADVYANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQ 1010

Query: 988  TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKV 1046
            TV+G+I  L++    RG K+  + +DD S  +E  +  + +  N+ +L+ + ++++ G+V
Sbjct: 1011 TVAGLIVNLRVMKNKRGDKMGFVTLDDRSGRIEASLFAEAFAANQGLLQTDAMVVIEGEV 1070

Query: 1047 LEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKN 1100
             +D F   +R+ A+++  +  AR    +   +          LK   LR+      + + 
Sbjct: 1071 SQDDFSGGLRLRAKRVMGLEEARTALAESLRL----KVAADALKGDRLRWLAELCGRHRG 1126

Query: 1101 GLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
              P  + Y  +   +  ++F  ++++ P D L  AL +  G  N  + Y
Sbjct: 1127 NCPVTVDYS-SSDARALLQFGDDWRIDPADALIQALRDQFGRDNVFLNY 1174


>gi|126667580|ref|ZP_01738550.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17]
 gi|126628006|gb|EAZ98633.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17]
          Length = 1161

 Score =  968 bits (2502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1157 (41%), Positives = 748/1157 (64%), Gaps = 40/1157 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+R+  +I+       PA+ +T+ SN+F +++FYK+A   G+KPI
Sbjct: 6    FVHLRIHSEHSLVDGLVRVKPLIKRVVELGMPAVGLTEQSNMFSLVRFYKAALGAGVKPI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG D+W  N  E + P R  LL  NN+GYL L E++S  Y E   +G+  I+ EWLE   
Sbjct: 66   IGADLWFENPDEPESPFRTTLLASNNDGYLNLTEIVSLGYTEGQRFGKPIIKREWLEARS 125

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
               GLI LSG  +GD+  A+ + +  +A   A  W  ++P +FY+E+QR  +      + 
Sbjct: 126  --QGLIMLSGGKMGDVAKAMLSDKPKLARERACYWRDLYPGSFYLELQRTGRAGDEDCLH 183

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ + LP+VAT+ + F+   +F AHE R CI E   L + +R ++F+ +Q+ ++ 
Sbjct: 184  LNVALAAELGLPVVATNDVHFIYAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQHLRSA 243

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EMI+LF DIP A++NT+ IA+RC++ +  G+  LP +P P+ + +ND+    S+ GL+ 
Sbjct: 244  EEMIELFADIPEAVENTLAIARRCSVTVRMGEYFLPNYPVPEGMTMNDYFRRVSEEGLED 303

Query: 305  RLL-NLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            RL   L KD   Y  ++  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGPG
Sbjct: 304  RLAKTLPKDDPDYDSKRQAYYDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGPG 363

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+  ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI YV ++
Sbjct: 364  RGSGAGSLVAYAQLITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIAYVAEK 423

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL+ A+++EP
Sbjct: 424  YGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEVG--MTLAKAVEQEP 481

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
             L E +  +EE +++ E+A ++EG+ RN G HAGGV+IAP+K+ +F PLY  +    +++
Sbjct: 482  SLKEFLAQDEEAQEIWEMAIKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDDGGSLVT 541

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDKDT 598
            Q+DK+D+E+ GL+KFDFLGL TL+I+D   + +K IN +          ++++PL+D  +
Sbjct: 542  QFDKNDVEDAGLVKFDFLGLRTLTIID---WALKMINPRREKRGLKPLDISEIPLDDPAS 598

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + +LKKA T AVFQLES+GMK++++  +PD  E++IAL++L+RPGP+   ++ +F  RKH
Sbjct: 599  FVMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKH 658

Query: 657  GEY---FNYPDPR---TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G+    F +PD +    K VL  TYG+++YQEQVMQIAQ++GGYSLG AD+LRRA+GKKK
Sbjct: 659  GKQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMGGYSLGNADMLRRAMGKKK 718

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + ++FF +G     + K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 719  PEEMAKQKQFFLDGCAGNNIDKALAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 778

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY++ FMAA L+  M +T+K+  LV++  ++  L ++ P+++ S+Y F      DG   +
Sbjct: 779  HYTAEFMAAVLTADMQNTDKVVTLVEEC-RSLKLDLVLPDVSTSEYAF--TANDDG---Q 832

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            + YGLGAIKG G+  I++IVT RK  G FT+LFDF +R+D K +N+R + ++I +GA D 
Sbjct: 833  VVYGLGAIKGLGEGPIDSIVTARKENGPFTDLFDFCRRVDLKKVNKRALEAMIRAGAMDK 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKN--DDNNNLKEYLNYVKVPSWSKKQ 945
                R  L+ASI+ A+  A +  +      + +F +  +   ++  Y +   +  W +K+
Sbjct: 893  LGAGRAQLMASIEKAILQAGQQSRNEAAGMVDMFGDMLETAADVDAYTDVADIREWPEKK 952

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSG-IITELKLKTTYR 1003
             L  EK  LG  L+ H F  YE E+R+F+   +++LKP  S   V+G ++ +  +KT   
Sbjct: 953  RLKGEKDTLGLYLTGHPFDEYEREVRRFVRSSIADLKPNKSPQRVAGLVVAQRTMKTRTG 1012

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              +  I +DD S  +E  + ++ + +N+ +L+ +++++V G+V  D +   +++    + 
Sbjct: 1013 STMCFITLDDRSGRIEATLFSEAFFENRELLQSDQVIVVEGQVSHDDYSGQMKMRVNSVM 1072

Query: 1064 DINVARILYGKKFSVMFNRT----FNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
            D+  AR  + +   +  N +      +  L+++L   +C+    ++ Y     S + E+ 
Sbjct: 1073 DVASARQQFSRGLQLKLNESQLGNGLLDSLEQLLAPHRCEGSPVWIEYTSPAASTRIELG 1132

Query: 1120 FPLNYKVQPIDDLKLAL 1136
               +++V+P D L L L
Sbjct: 1133 S--SWRVEPNDSLLLEL 1147


>gi|399520002|ref|ZP_10760793.1| DNA polymerase III alpha subunit [Pseudomonas pseudoalcaligenes CECT
            5344]
 gi|399112399|emb|CCH37352.1| DNA polymerase III alpha subunit [Pseudomonas pseudoalcaligenes CECT
            5344]
          Length = 1176

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1190 (42%), Positives = 749/1190 (62%), Gaps = 57/1190 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MTQAFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   +RL LL  N  GY  L EL+S+ + E  +     I+ +W+
Sbjct: 61   IKPICGADIWLASAEEDGPLTRLTLLAMNAKGYRNLTELISRGWAEGQSNDLVIIQRDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALSGA  G++G A+  G   +AE   R W  +FPD FY+E+QR  +    
Sbjct: 121  KEAA--EGLIALSGAREGEVGQALLAGDEALAETRLREWMAVFPDRFYLEVQRTSRVGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVALADRVEAPLVATNDVRFIKQGDFEAHETRVCIGEGRTLDDPRRPRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSAEEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +P
Sbjct: 299  GLEERLQVLLPKDTPDYEAKRQVYIDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V ++YG++AVSQI+TFG+MAAK  +RDV R     Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +KN+EE +++ +++ ++EG++R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLKNDEEAQEIWDMSLKLEGVVRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILD---KTIYFIKKINTKTTN--FSLNKLPLN 594
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+    +TI+ I+K +  +     +++ +PL+
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGASDEDLVNIDFIPLD 596

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            DK TY++L+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F 
Sbjct: 597  DKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFI 656

Query: 653  RRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG    +YP P       + VL  TYGI++YQEQVMQIAQ++GGY+LGQAD+LRRA+
Sbjct: 657  NRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMGGYTLGQADMLRRAM 716

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F  G  K G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA
Sbjct: 717  GKKKPEEMAKQRGGFIEGCAKNGIDAELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTA 776

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA LS  M +T+K+ ILV++  +   L I PP++N+S++ F   +  DG
Sbjct: 777  WLKAHYPAPFMAAVLSADMHNTDKVVILVEEC-RNMKLRIDPPDVNVSEFKF--TVNDDG 833

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
               +I YGLGA+KG G+  +EAIV  R + G F +LFDF  R+D K IN+R + +LI SG
Sbjct: 834  ---RIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRTLEALIRSG 890

Query: 886  AFD---------------CFNEKRYMLVASIDVALKNAEKTKKFI--NQLSLFKND-DNN 927
            A D                 ++ R +L+AS++ A+++AE+T +      + LF       
Sbjct: 891  ALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGLFAEP 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K      K+ L  EK  LG  LS H    YE EIR+F    + ELK     
Sbjct: 951  EADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVELKAARDT 1010

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             T++G+I  L++    +G K+  I +DD S  +E  +    +  N+ +L+ + L++V G+
Sbjct: 1011 QTIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFADAFASNQALLQNDALVVVEGE 1070

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  +  AR        +          LK   LR+      K K
Sbjct: 1071 VSNDDFSGGLRLRAKRVMSLEEARTGLADSLRL----KVAGEALKGDRLRWLAELCSKHK 1126

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++F   +++ P D L  AL +  G  N  + Y
Sbjct: 1127 GACPVTVDYS-GEQARALLQFGDAWRIDPADTLIQALRDQFGRDNVFLHY 1175


>gi|300114836|ref|YP_003761411.1| DNA polymerase III subunit alpha [Nitrosococcus watsonii C-113]
 gi|299540773|gb|ADJ29090.1| DNA polymerase III, alpha subunit [Nitrosococcus watsonii C-113]
          Length = 1158

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1149 (43%), Positives = 731/1149 (63%), Gaps = 33/1149 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HLRLH+EYS++D L+RI  +I+A      PA+A+TD SN+F +IKFY++A   G
Sbjct: 1    MAPSFVHLRLHTEYSLVDSLVRIRPLIQATREAGMPAIAVTDQSNVFAMIKFYRAAQAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+++    E  + SR  LL +N  GY  L  LLS+AY E    G   ++ +WL
Sbjct: 61   VKPIIGADIFLAGSGERSRASRFTLLCQNELGYRHLSGLLSRAYREGQYQGIPRLQWDWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     DGLI LSG   GD+G A+ +G +  A     RW  +FP  +Y+E+ R  +    
Sbjct: 121  QN--LNDGLIVLSGGREGDVGQALLSGNDIQAGRLLERWQALFPGRYYLELHRTGREGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A   + P+VAT+ ++FL+  +F AHE R CI EG  L++ +R + ++++Q 
Sbjct: 179  DYLHAAVALALAYDTPVVATNDVRFLRPQDFEAHEARVCIHEGRALNDPRRSRHYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T SEM +LF D+P A++NT+EIA+RCNL+L  GK  LP FP P++ +I  FL ++++ 
Sbjct: 239  LRTPSEMAELFVDLPEALENTVEIARRCNLELTLGKYYLPNFPVPEDWSIEAFLAAEARQ 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  LY      K E+  Y+ RL  E+  I +M F GYFLIV+DFI+WAK N IPV
Sbjct: 299  GLEQRLAKLYPLETERKAEQSAYEARLAEELAVINQMGFPGYFLIVADFIRWAKKNEIPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++L+FERFLNP R+S+PDFDIDFC E RD VI YV
Sbjct: 359  GPGRGSGAGSLVAYALQITDLDPLAFDLIFERFLNPERVSLPDFDIDFCMERRDWVIDYV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG+D VSQI+T+GTMAAK  +RDVGRVL   Y F D I+KLIPF     +TL  A+ 
Sbjct: 419  SQHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFD--LKMTLDKALA 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            E   L  R + EEEV+ L++LA+++EG+IRN G HAGGV+IAP KL  + P Y ++G +G
Sbjct: 477  ESEGLRSRYEGEEEVQFLVDLARKLEGLIRNAGKHAGGVVIAPKKLTEYVPYYCEQGASG 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDT 598
            +++Q+DKDDIE IGL+KFDFLGL TL+ILD  +  I +  T+   T   L  LP++D  +
Sbjct: 537  VVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGETLLDLALLPMDDSKS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            Y LLK+  T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ ++  RKH
Sbjct: 597  YGLLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDDYINRKH 656

Query: 657  GE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G    +YP P  + +L  TYG++VYQEQVMQIAQ+L GY+LG+ADLLRRA+GKKK  EM 
Sbjct: 657  GRAQVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R  F  GA    + + KA  IF+ +EKFA YGFNKSH+ AYA+++Y TAYLK HY + 
Sbjct: 717  KQRAIFTAGAKAREVDEKKATAIFDLMEKFAEYGFNKSHSAAYAVIAYQTAYLKAHYPAS 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            +MAA LS  MD+T+K+K  V++      L +LPP++N S Y F     S      IRYGL
Sbjct: 777  YMAAVLSADMDNTDKVKAFVEECW-AMKLDLLPPDVNASNYLF-----SAQGETAIRYGL 830

Query: 836  GAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G + +E I+  R + G + NLF+F +RID + I+RR++ +L+ +GA D     R
Sbjct: 831  GAIKGVGAAALEGIIKAREQHGLYQNLFEFCRRIDLRKISRRVLEALVRAGALDSLGANR 890

Query: 895  YMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L AS++ AL  AE+  +   + Q  LF  D  +  KE  +YV+   W ++Q L  EK+
Sbjct: 891  ATLEASLEAALALAEQHCRNASLGQNDLFGLDLVSEDKEAGSYVETKEWDEEQRLALEKE 950

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSEL--------KPTYSCTVSGIITELKL-KTTYR 1003
             LG  LS H    Y+ E++Q  P  ++EL          +    ++G++  ++  K    
Sbjct: 951  TLGLYLSGHPIDCYKQELKQIAPCRIAELIDRANNRQNRSQQIMIAGLVGSVRTNKARQG 1010

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
            G+   I ++D S  +E+    ++++K +  L+ + ++++ G +  D +  +I + AEKI+
Sbjct: 1011 GRNAFITLEDGSARLEIKAFAEVFDKCREQLQPDHIVVIEGALRWDSYADSIAVTAEKIY 1070

Query: 1064 DINVARILYGKKFSVMFNRTF----NISILKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
             I  AR ++ K   +  + T      I+ L +IL  F+ +   P  + Y  N   +  + 
Sbjct: 1071 SITEAREIFAKSLEIGLDGTSVGQEVIAELAQILAPFR-QGRCPVAIDY-RNGIARARLV 1128

Query: 1120 FPLNYKVQP 1128
                ++V+P
Sbjct: 1129 LGEEWRVRP 1137


>gi|22126996|ref|NP_670419.1| DNA polymerase III subunit alpha [Yersinia pestis KIM10+]
 gi|45442559|ref|NP_994098.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Microtus
            str. 91001]
 gi|108806532|ref|YP_650448.1| DNA polymerase III subunit alpha [Yersinia pestis Antiqua]
 gi|108813101|ref|YP_648868.1| DNA polymerase III subunit alpha [Yersinia pestis Nepal516]
 gi|149366940|ref|ZP_01888973.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125]
 gi|162420959|ref|YP_001607757.1| DNA polymerase III subunit alpha [Yersinia pestis Angola]
 gi|165927052|ref|ZP_02222884.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. F1991016]
 gi|165939826|ref|ZP_02228366.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. IP275]
 gi|166011915|ref|ZP_02232813.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166211235|ref|ZP_02237270.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|167400078|ref|ZP_02305596.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167419915|ref|ZP_02311668.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. MG05-1020]
 gi|167425342|ref|ZP_02317095.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis
            str. K1973002]
 gi|218928227|ref|YP_002346102.1| DNA polymerase III subunit alpha [Yersinia pestis CO92]
 gi|270487325|ref|ZP_06204399.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27]
 gi|294503076|ref|YP_003567138.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003]
 gi|384121518|ref|YP_005504138.1| DNA polymerase III subunit alpha [Yersinia pestis D106004]
 gi|384125690|ref|YP_005508304.1| DNA polymerase III subunit alpha [Yersinia pestis D182038]
 gi|21960041|gb|AAM86670.1|AE013912_14 DNA polymerase III, alpha subunit [Yersinia pestis KIM10+]
 gi|45437424|gb|AAS62975.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Microtus str.
            91001]
 gi|108776749|gb|ABG19268.1| DNA polymerase III, alpha subunit [Yersinia pestis Nepal516]
 gi|108778445|gb|ABG12503.1| DNA polymerase III, alpha subunit [Yersinia pestis Antiqua]
 gi|115346838|emb|CAL19724.1| DNA polymerase III, alpha chain [Yersinia pestis CO92]
 gi|149290554|gb|EDM40630.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125]
 gi|162353774|gb|ABX87722.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
 gi|165912229|gb|EDR30866.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. IP275]
 gi|165920948|gb|EDR38172.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. F1991016]
 gi|165989181|gb|EDR41482.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166207006|gb|EDR51486.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|166962656|gb|EDR58677.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. MG05-1020]
 gi|167050786|gb|EDR62194.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167055742|gb|EDR65526.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis
            str. K1973002]
 gi|262361114|gb|ACY57835.1| DNA polymerase III subunit alpha [Yersinia pestis D106004]
 gi|262365354|gb|ACY61911.1| DNA polymerase III subunit alpha [Yersinia pestis D182038]
 gi|270335829|gb|EFA46606.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27]
 gi|294353535|gb|ADE63876.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003]
          Length = 1171

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1158 (43%), Positives = 746/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FPD +Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ K+K GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKAKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 372  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  RK  G+F  LFD   R+D K +N+RI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y    ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYASGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|410088390|ref|ZP_11285085.1| DNA polymerase III alpha subunit [Morganella morganii SC01]
 gi|409765312|gb|EKN49427.1| DNA polymerase III alpha subunit [Morganella morganii SC01]
          Length = 1159

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1149 (43%), Positives = 744/1149 (64%), Gaps = 38/1149 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL +   +++  A+   PA+AITD +NL G++KFY SA+  G+K
Sbjct: 4    PRFIHLNIHSDYSMIDGLAKTGPLVKKVASMNMPAMAITDFTNLCGLVKFYGSAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + + L +L +NN GY  L  L+S+AY +        I+ +WL  
Sbjct: 64   PIVGADFLMESELLGDELASLTILARNNTGYQNLTLLISEAYQKGYGAQGPTIQRDWLVN 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG   GD+G  +  G N + E     W   FPD+FY+E+ R  + +    
Sbjct: 124  HK--EGLIILSGGRKGDVGKFLLRGNNVLVEQALEFWQTHFPDSFYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  +LP+VAT+ ++F+   +F AHE+R  I +G  L++ KR K ++ +Q  +
Sbjct: 182  LHAAVQLATEKSLPVVATNDVRFISSEDFDAHEIRVAIHDGYTLADPKRPKLYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QN++EIAKRCN+ +  G+  LP+FPT  +++  D+L+ +SK GL
Sbjct: 242  SEDEMCELFADIPEALQNSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDYLVKRSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N++PVGP
Sbjct: 301  EERLAFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V +
Sbjct: 361  GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+ +EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLGEVYEADEEVRALIDMARILEGVTRNAGKHAGGVVIAPTKITDFAPLYCDPEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I   N K       +  +PL+D+ +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRNEKKGKPPVDIAAIPLDDQKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLRPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        + VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDVEWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAVKNGIDAELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  IEAI+  RK G+F ++FD   R D K +NRR++  LI SGAFD    
Sbjct: 833  YGIGAIKGVGEGPIEAILEARKDGYFKDIFDLCARTDTKKLNRRVMEKLIMSGAFDRLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             R  L++S++ ALK A++  K   I Q  +F        +   +Y  +P W  +  L  E
Sbjct: 893  HRAALMSSLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVERSYANIPKWQDEIILEGE 952

Query: 951  KKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            ++ LG  L+ H    Y  EI ++   + L ++ PT      TV G++   K+ TT RG +
Sbjct: 953  RETLGLYLTGHPINRYLKEIERYTHGLRLKDVNPTPRGQMTTVVGLVLASKVITTKRGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I +  +DD S  +E+++ +   E+ +++L+++ +LI SG+V  D F   +++   ++ DI
Sbjct: 1013 IGVCTLDDRSGRLEIMLFSDALERYQHLLEQDRILIASGQVSFDDFSGGLKMVVRELLDI 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKC-----KNG-LPFVLYYCINKSIKYEMK 1119
            + AR  Y +  ++      +  I +++L R +      ++G +P  LYY  + + +  M+
Sbjct: 1073 SEAREKYARGLAISLT---DGQIDEQLLHRLRGALEPHRSGTIPVHLYYQKDDA-RARMR 1128

Query: 1120 FPLNYKVQP 1128
            F   ++V P
Sbjct: 1129 FGATWRVTP 1137


>gi|398965097|ref|ZP_10680763.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM30]
 gi|398147551|gb|EJM36255.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM30]
          Length = 1173

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1188 (42%), Positives = 744/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A      PA+A+TD +N+  ++KFYK+    G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKALTGMNMPAVAVTDQNNMCSLVKFYKNTMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDGPLSRISLLVMNAKGYRNLTELISRGFIDGQRNGMIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G  D AE  AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--NEGLIMLSAAKEGEIGMAMISGNPDEAETLAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP AI+NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPDAIENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFE 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TYNLL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYNLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y  + K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YATHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +R+  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKLHTQDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMEYT-SPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|421493578|ref|ZP_15940934.1| DNAE [Morganella morganii subsp. morganii KT]
 gi|455738102|ref|YP_007504368.1| DNA polymerase III alpha subunit [Morganella morganii subsp. morganii
            KT]
 gi|400192328|gb|EJO25468.1| DNAE [Morganella morganii subsp. morganii KT]
 gi|455419665|gb|AGG29995.1| DNA polymerase III alpha subunit [Morganella morganii subsp. morganii
            KT]
          Length = 1159

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1149 (43%), Positives = 744/1149 (64%), Gaps = 38/1149 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL +   +++  A+   PA+AITD +NL G++KFY SA+  G+K
Sbjct: 4    PRFIHLNIHSDYSMIDGLAKTGPLVKKVASMNMPAMAITDFTNLCGLVKFYGSAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + + L +L +NN GY  L  L+S+AY +        I+ +WL  
Sbjct: 64   PIVGADFLMESELLGDELASLTILARNNTGYQNLTLLISEAYQKGYGAQGPTIQRDWLVN 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG   GD+G  +  G + + E     W   FPD+FY+E+ R  + +    
Sbjct: 124  HK--EGLIILSGGRKGDVGKFLLRGNSALVEQALEFWQTHFPDSFYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  +LP+VAT+ ++F+   +F AHE+R  I +G  L++ KR K ++ +Q  +
Sbjct: 182  LHAAVQLATEKSLPVVATNDVRFISSEDFDAHEIRVAIHDGYTLADPKRPKLYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QN++EIAKRCN+ +  G+  LP+FPT  +++  D+L+ +SK GL
Sbjct: 242  SEDEMCELFADIPEALQNSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDYLVKRSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N++PVGP
Sbjct: 301  EERLAFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V +
Sbjct: 361  GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+ +EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLGEVYEADEEVRALIDMARILEGVTRNAGKHAGGVVIAPTKITDFAPLYCDPEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I   N K       +  +PL+D+ +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRNEKKGKPPVDIAAIPLDDQKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLRPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        + VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDVEWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAVKNGIDAELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  IEAI+  RK G+F ++FD   R D K +NRR++  LI SGAFD    
Sbjct: 833  YGIGAIKGVGEGPIEAILEARKDGYFKDIFDLCARTDTKKLNRRVMEKLIMSGAFDRLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             R  L++S++ ALK A++  K   I Q  +F        +   +Y  +P W  +  L  E
Sbjct: 893  HRAALMSSLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVERSYANIPKWQDEIILEGE 952

Query: 951  KKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            ++ LG  L+ H    Y  EI ++   + L ++ PT      TV G++   K+ TT RG +
Sbjct: 953  RETLGLYLTGHPINRYLKEIERYTHGLRLKDVNPTPRGQMTTVVGLVLASKVITTKRGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I +  +DD S  +E+++ +   E+ +++L+++ +LI SG+V  D F   +++   ++ DI
Sbjct: 1013 IGVCTLDDRSGRLEIMLFSDALERYQHLLEQDRILIASGQVSFDDFSGGLKMVVRELLDI 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKC-----KNG-LPFVLYYCINKSIKYEMK 1119
            + AR  Y +  ++      +  I +++L R +      ++G +P  LYY  + + +  M+
Sbjct: 1073 SEAREKYARGLAISLT---DGQIDEQLLHRLRGALEPHRSGTIPVHLYYQKDDA-RARMR 1128

Query: 1120 FPLNYKVQP 1128
            F   ++V P
Sbjct: 1129 FGATWRVTP 1137


>gi|424921671|ref|ZP_18345032.1| PolC [Pseudomonas fluorescens R124]
 gi|404302831|gb|EJZ56793.1| PolC [Pseudomonas fluorescens R124]
          Length = 1173

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1188 (42%), Positives = 744/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKALTGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +IE    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDAPLSRISLLVMNAKGYRNLTELISRGFIEGQRNGMIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+  G    AE  AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--NEGLIMLSAAKEGEIGMALIGGNPAEAEALAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP AI+NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPDAIENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFE 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K+AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y  + K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YATHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +R+  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKLHTQDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMEYT-SPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|78485459|ref|YP_391384.1| DNA polymerase III subunit alpha [Thiomicrospira crunogena XCL-2]
 gi|78363745|gb|ABB41710.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2]
          Length = 1158

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1132 (44%), Positives = 728/1132 (64%), Gaps = 37/1132 (3%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            + QF+HL +HSEYS++D  +R+   I  A    QPALA+TD  N+F ++KFY +A + GI
Sbjct: 1    MSQFVHLHVHSEYSVVDSTIRVKSAISLAQKSQQPALALTDQMNMFALVKFYTAAMDAGI 60

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENI----NYGRAEIRI 117
            KPIIG D+ I  E E+    +++ L +N+ GYL L  L+S AY++N     N  +A I+ 
Sbjct: 61   KPIIGSDLLI--EAEDGNVFKVVCLCQNDQGYLNLSHLISMAYLKNQKVVQNDMKALIKQ 118

Query: 118  EWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
            EWL +  + +GLI LSG   GD+G A+   + ++A      W+  FPD FY+E+ R  + 
Sbjct: 119  EWLAE--FNEGLIILSGGKDGDVGQAILAEKPNLAAKRVSWWASYFPDRFYLELIRTGRD 176

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 I   +++A    LP+VAT+ I+F +  +F AHEVR CI +G IL +  R K++++
Sbjct: 177  KEELYIAGAVDVAQRYELPVVATNDIRFEQAEDFDAHEVRVCIHDGYILDDPNRPKRYSE 236

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ +++  EM+KLF DIP AI+NT+EIAKRCN+ L  G   LP FP P+ + ++++ I +
Sbjct: 237  EQYYRSSEEMVKLFEDIPEAIENTVEIAKRCNVSLTLGTYFLPDFPVPEGLTLDEYFILE 296

Query: 298  SKHGLKKRLLNLYKD--PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKN 355
            S+ GL +RL  L+ D  PE +  ++  Y  RL+FE++ I +M F GYF IV+DFIQW KN
Sbjct: 297  SQKGLDERLNFLFGDLSPEAFAEKRKAYDDRLKFELDIITQMGFPGYFFIVADFIQWGKN 356

Query: 356  NSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDR 415
            + +PVGPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC E RD 
Sbjct: 357  HQVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMERRDE 416

Query: 416  VIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL 475
            VI YV  +YG+D VSQIVTFGTMAAK  +RDVGRVL   Y   DSI+KLIP   G  I L
Sbjct: 417  VIDYVARQYGQDHVSQIVTFGTMAAKAVVRDVGRVLGNGYGMVDSIAKLIPNDLG--IKL 474

Query: 476  SNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
              A+ +E QL ER  NEE+VR LI+LA ++EG +RN G HAGGV+I P  L +FCP+  +
Sbjct: 475  QGALDQEEQLQERYDNEEDVRLLIDLALKLEGTVRNTGKHAGGVVIGPKPLDHFCPVLCE 534

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPL 593
               + +++Q DK+D+E  GL+KFDFLGL TL+I+D  ++FI +           + ++PL
Sbjct: 535  PDGSSVVTQLDKNDVETAGLVKFDFLGLRTLTIIDWALHFINEGKQPGDEGFVEIERIPL 594

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNF 651
            +D  T++L+K   T  VFQLES GM+N++   +PD FE+IIAL++L+RPGP++  ++ NF
Sbjct: 595  DDSQTFDLIKTGKTTGVFQLESSGMQNLIVRLRPDCFEDIIALVALFRPGPLESGMVDNF 654

Query: 652  CRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
              RKHG E  +YPD +      K +L  TYG+++YQEQVMQIAQ+L GY+LG AD+LRRA
Sbjct: 655  IARKHGKEKVSYPDAQYQHDSLKTILEPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRA 714

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM + R  F++GAIK  +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY +
Sbjct: 715  MGKKKPEEMAKQRSIFKDGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQS 774

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
            A+LKTHY + FMAA +S  MD+T+K+  +V +     G+ +  P+IN  + +F  I    
Sbjct: 775  AWLKTHYPAEFMAAQISSDMDNTDKVVHMVNECY-AMGIDVAQPSINEGEIHFKAI---- 829

Query: 826  GKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINS 884
               K +RYGLGAIKG G+S +E IV ERK  G + +LFDF  R+ +K +N+R+I +LI++
Sbjct: 830  RGQKAVRYGLGAIKGVGESALEGIVAERKQNGPYQDLFDFCLRVTRK-VNKRVIEALISA 888

Query: 885  GAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWS 942
            GA DC +  R  ++ S+ +AL+ AE+ +K     Q  LF +  +   +     V VP   
Sbjct: 889  GAMDCIHNNRQAMLDSVGMALQKAEQKQKDEEAGQTDLFGDVTSFEAENESKLVDVPEMP 948

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY--SCTVSGIITELKLKT 1000
            +K  L  EK VLG  ++ H   IY  E+ + +   LS L+P        +G+I E + K 
Sbjct: 949  EKLRLKGEKDVLGLYMTGHPIEIYREELDKMVEQKLSALRPEKWNKKWAAGLIVEARNKV 1008

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T  G ++  + IDD +  ++V++   ++E  ++IL  + +++V G+V ED F   I+++A
Sbjct: 1009 TRNGSRMGFLAIDDQTARLDVVLRPAVFEACRDILIPDTVILVYGEVAEDTFNGGIKLDA 1068

Query: 1060 EKIFDINVARILYGKKFSVMFNRTF---NISILKKILLRFKCKNGLPFVLYY 1108
            E++  +  +R    +   +  + +     I  L  +L  +  + GLP V+ Y
Sbjct: 1069 EQVVTLAESRAEKARAIKLFADDSLAVNRIQELSTVLAHYTSEEGLPLVIDY 1120


>gi|333984312|ref|YP_004513522.1| DNA polymerase III subunit alpha [Methylomonas methanica MC09]
 gi|333808353|gb|AEG01023.1| DNA polymerase III, alpha subunit [Methylomonas methanica MC09]
          Length = 1163

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1158 (42%), Positives = 744/1158 (64%), Gaps = 42/1158 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P FIHLR+HSE+S++DG++RI  +I+  A    PA AIT+ SNLF ++KFYK+A   G
Sbjct: 1    MNPGFIHLRIHSEFSLVDGIVRIKPLIKKLAEYAMPAAAITEQSNLFSLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKP+IG DVW+ N  E   P RL LL +N  GY+ L EL+S+ Y +  + G   ++ +WL
Sbjct: 61   IKPLIGADVWVLNPDEPAAPHRLTLLARNKLGYVTLTELISQGYQQGQHQGVPMLQKDWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E+N+   GLI LSGA  GDIG A+       A   A  W  +FPD+FY+E+QR  +    
Sbjct: 121  EQNR--QGLIVLSGAMEGDIGQALLAENTQQANRCAEYWRDLFPDSFYLELQRVGKAEEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I+  + +A+  +LP+VAT+ ++F+ KT+F AHEVR CI +G +L +++R K +T +Q 
Sbjct: 179  RYIKLAVELATEFDLPVVATNDVRFISKTDFDAHEVRVCIHQGRVLDDSRRPKNYTNQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM +LF DIP A++N++ IA+RCN++L  G+  LP FP P  + ++D+    S+ 
Sbjct: 239  LRTAEEMAELFADIPEALENSVAIAQRCNVELTLGENYLPDFPVPAGMTLDDYFKHASRQ 298

Query: 301  GLKKRLLNLYK-DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RLL         ++  +  Y +RL+ E+  I++M F GYF+IV+DFIQWAKNN+IP
Sbjct: 299  GLEERLLQHAPVGAGSFEENRKVYDERLEVELGVIVQMGFPGYFMIVADFIQWAKNNAIP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DP+ ++LLFERFLNP R+SMPDFDIDFC E RD VI Y
Sbjct: 359  VGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDIDFCMERRDEVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   YG+D VSQI+T+G+MAAK  IRDVGRV+   Y F D ++KLIPF+ G  +TL  A+
Sbjct: 419  VAGHYGRDHVSQIITYGSMAAKAVIRDVGRVMGHAYGFVDRLAKLIPFEIG--MTLEKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            KE P+L      EEEV+ LI++A+ +EGI RN G HAGGV+I+P+KL +F PLY + G  
Sbjct: 477  KESPELKALYDTEEEVKALIDMARSLEGISRNAGKHAGGVVISPTKLTDFAPLYCEAGGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
             +++Q+DKDD+E +GL+KFDFLGL TL+I+D  +  I  ++     +   ++++P +D  
Sbjct: 537  NLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALQTINRQRAQRGESPIDISQIPRDDLP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            +Y LLK A T AVFQLES+GMK ++K+ KPD F++IIAL++L+RPGP++  ++ ++   K
Sbjct: 597  SYELLKNAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLESGMVDDYINVK 656

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG    Y  P  + +L  T G+++YQEQVMQIA+ L  Y+LG AD+LRRA+GKKK  EM 
Sbjct: 657  HGAKAEYAHPLLEPILKPTNGVILYQEQVMQIARELAMYTLGGADMLRRAMGKKKPEEMA 716

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F +G++   + +  A  +F+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY + 
Sbjct: 717  KEREKFMSGSVANQIDEGIATYVFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYPAA 776

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  MD+T+K+ +L+ D  +   L I PP+IN+S Y F   +   G   +I YG+
Sbjct: 777  FMAAVMSSDMDNTDKVVVLI-DECREMKLEICPPDINVSNYQF--TVNDKG---QIVYGI 830

Query: 836  GAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G++ I+ ++ ER   G +  L+D  KR+D + +NRR++ +LI +GA D     R
Sbjct: 831  GAIKGVGENAIDDLIKERNANGPYAGLYDLCKRVDLRKVNRRVLEALIRAGALDAIEPNR 890

Query: 895  YMLVASIDVALKNAEKTKK--FINQLSLF----KNDDNNNLKEYLNYVKVPSWSKKQELI 948
               +A +  AL+ AE+  K     Q  LF       D+   + Y N V+   W++K++L 
Sbjct: 891  AAHLAELTTALRVAEQHGKMALAGQNDLFGLGAAETDDGEAEAYANLVE--PWTEKEKLE 948

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL-------KPTYSCTVSGIITELKLKTT 1001
             EK+ LG  L+ H    Y  E++      L  L       K      V+G+I E++ + T
Sbjct: 949  AEKQTLGLFLTGHPIAEYLPELKHITHGTLGSLEADAGRIKGKMEARVAGLIVEMRTRQT 1008

Query: 1002 YRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             +GK++    +DD +  +EV   + +Y+K +++L ++ LL+  G +  D +  ++R+ AE
Sbjct: 1009 KQGKMMGFATLDDRTGRLEVAAFSGIYDKYRDLLSKDTLLVAEGSLSMDDYTNSLRMTAE 1068

Query: 1061 KIFDINVARILYGKKFSVMFN-------RTFNISILKKILLRFKCKNGLPFVLYYCINKS 1113
            K++ +  AR ++ +   + ++       R F +  LK+IL+ F+     P  + Y +  +
Sbjct: 1069 KLYSMEEAREMFARGIVLDWDVSQWPRSRAF-VEELKQILMPFRGGE-CPVAIEY-VAAT 1125

Query: 1114 IKYEMKFPLNYKVQPIDD 1131
             K  ++    ++V+P D+
Sbjct: 1126 AKSTVQLGDEWRVRPSDE 1143


>gi|374623065|ref|ZP_09695582.1| DNA polymerase III subunit alpha [Ectothiorhodospira sp. PHS-1]
 gi|373942183|gb|EHQ52728.1| DNA polymerase III subunit alpha [Ectothiorhodospira sp. PHS-1]
          Length = 1171

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1165 (41%), Positives = 727/1165 (62%), Gaps = 45/1165 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL LHSE+S++DGL+R+  ++ AA     PA A+TD +NLF ++KFYK+A   G
Sbjct: 1    MTQPFVHLHLHSEFSLVDGLVRVGPLVAAARGAGMPACAVTDQNNLFAMVKFYKAALKSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIG D+W+T     + P+RL+LL +N+ GY +L  L+S+ Y E    G   +  EW 
Sbjct: 61   VKPIIGADLWVTAGEPGEPPTRLVLLCQNDPGYKRLTRLISRGYQEGQQSGTPILEREWF 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +   + GLIALSG   G++G A+ +   D A      W  +FP  FY+E+ R  +    
Sbjct: 121  TREACE-GLIALSGGREGEVGRALLSRDPDTAGPACDFWCDVFPGRFYLELIRTGREGEE 179

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+  NLP+VAT+ ++F+   ++ AHE R CI EG +L + +R ++++ +Q 
Sbjct: 180  DYLHAAVALAAERNLPVVATNDVRFISPDDYDAHEARVCIHEGRVLDDPRRPRRYSPQQY 239

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF DIP A+ NT+EIA+RCNL L  G+  LP++P P  +  +++    S  
Sbjct: 240  LKTPEEMAELFADIPEALANTVEIARRCNLVLTLGENYLPEYPIPAGMTTDEYFRQLSHR 299

Query: 301  GLKKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL +RL+ L+      + EK + Y+ RL  E++ I +M F GYFLIV+DFIQWAK+N++P
Sbjct: 300  GLDERLVRLFPPDTPDREEKEKTYRARLDVELDVICQMGFPGYFLIVADFIQWAKDNAVP 359

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DP+ Y LLFERFLNP R+SMPDFDIDFC E RD VI+Y
Sbjct: 360  VGPGRGSGAGSLVAYALKITDLDPIRYELLFERFLNPERVSMPDFDIDFCMEKRDSVIEY 419

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V  RYG+D VSQI+T+GTMAAK  +RD GRVL   Y F D I+K IPF+ G  +TL  A+
Sbjct: 420  VARRYGRDKVSQIITYGTMAAKAVVRDAGRVLGHAYGFVDRIAKQIPFEIG--MTLDKAL 477

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L    + +EEVR LI+LA+++EG+ RN G HAGGV+IAP+ L +F PL+ + G  
Sbjct: 478  EQEEDLRRSYEEDEEVRGLIDLARKLEGVARNAGKHAGGVVIAPTTLTDFSPLFCEPGGQ 537

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
            G+++ +DKDD+E IGL+KFDFLGL TL+I+D  +  I  ++         +N +PL++  
Sbjct: 538  GVVTHFDKDDVEAIGLVKFDFLGLRTLTIIDWAVQTINARRAKAGEPPLDVNDVPLDEDG 597

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            T+ LLK+  T AVFQLES+GMK+++K  +PD FE+I+AL++LYRPGP+   ++ +F  RK
Sbjct: 598  TFGLLKRQETTAVFQLESRGMKDLIKRLQPDNFEDIVALVALYRPGPLQSGMVDDFINRK 657

Query: 656  HGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
            HG     YP P  + +L  TYG+++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  EM
Sbjct: 658  HGRARVEYPHPALEPILRPTYGVILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEEM 717

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
             + R+ F  GA+  G+ +  A+ IF+ +EKFAGYGFNKSH+ AYALLSY TA+LK HY +
Sbjct: 718  AKQREIFLTGAVAQGVEEATASYIFDLMEKFAGYGFNKSHSAAYALLSYQTAWLKHHYPA 777

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA LS  MD T+K+  L+++  +   L+++PP++N S + F   +  D   + I YG
Sbjct: 778  AFMAAVLSADMDHTDKVVNLIEEC-RCMDLAVIPPDVNTSSHEF--TVRDD---RTIVYG 831

Query: 835  LGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGAIKG G+S I+ ++  R+  G F +L D   R D + INRR + +LI +GA D     
Sbjct: 832  LGAIKGVGESAIQVLIDSRRTDGPFASLDDLCVRADSQKINRRTLEALIRAGALDSIGPN 891

Query: 894  RYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            R  L+ ++ +A+  AE+ ++   + Q  LF       ++     V +P W +   L+ EK
Sbjct: 892  RATLMHNLPLAMSRAEQHRRDQSMGQGDLFGMAPPPEVEAVAAPV-LPEWEEDIRLLAEK 950

Query: 952  KVLGFCLSEHIFCIYETEIRQF----IPIYLSELKPT-----------------YSCTVS 990
            + LG  L+ H    YE E+R+     I   LS+L  +                  +  ++
Sbjct: 951  ETLGLYLTGHPITRYEAELRRITGKRIADLLSDLADSAPGQGTGETQGRGRQREQNALIA 1010

Query: 991  GIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050
            G++  ++L+    G++  + +DD S  +EV +    Y + +++L ++ LL+V G V  D 
Sbjct: 1011 GLVVGIRLRNAPSGRMAFLTLDDRSGRIEVGLFGDDYRRFQSLLVKDRLLVVEGGVGIDE 1070

Query: 1051 FLKNIRINAEKIFDINVARILYGKKFSVMFNRTFN---ISILKKILLRFKCKNGLPFVLY 1107
            F   +R+   ++ D++ AR  + K+  +  N   +   + +L++ L  F+      FV Y
Sbjct: 1071 FSGGVRMRGRQVMDLDQAREQFAKRVDLTLNGGTDPALVEVLEESLTPFRDGPCPVFVNY 1130

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDL 1132
               N   +   +    ++++P ++L
Sbjct: 1131 S--NGRARARFRLGDAWQLRPTEEL 1153


>gi|145598935|ref|YP_001163011.1| DNA polymerase III subunit alpha [Yersinia pestis Pestoides F]
 gi|145210631|gb|ABP40038.1| DNA polymerase III, alpha subunit [Yersinia pestis Pestoides F]
          Length = 1171

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1158 (43%), Positives = 745/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FPD +Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ K+K GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKAKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+  PE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPAPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 372  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  RK  G+F  LFD   R+D K +N+RI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y    ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYASGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|330830740|ref|YP_004393692.1| DNA polymerase III subunit alpha [Aeromonas veronii B565]
 gi|423208587|ref|ZP_17195141.1| DNA polymerase III subunit alpha [Aeromonas veronii AER397]
 gi|328805876|gb|AEB51075.1| DNA polymerase III, alpha subunit [Aeromonas veronii B565]
 gi|404618432|gb|EKB15352.1| DNA polymerase III subunit alpha [Aeromonas veronii AER397]
          Length = 1159

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1098 (44%), Positives = 728/1098 (66%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +IN ++ AAA +  PALA+TD  N+ G+++FY +A+ KGIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ ++    +  RL LL  +N+GY  +  L+S+ Y      GR  I   WL +
Sbjct: 64   PIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKSWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   GD+G  +  G   + E     +   FPD +Y+E+ R  +P+    
Sbjct: 124  --HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+   LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVAIATEFALPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL++KSK GL
Sbjct: 242  SQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGN 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI++ R + G F +LFDF  R+D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F    ++ +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y +E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|254236554|ref|ZP_04929877.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719]
 gi|126168485|gb|EAZ53996.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719]
          Length = 1173

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1187 (42%), Positives = 748/1187 (63%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 61   IKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 121  KEAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALASRCNAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ ++  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 777  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 831  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 891  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 951  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   +      +  +LK   LR+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFNRHRGSC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y  +   K  ++F  +++V P DDL  AL +  G  N  + Y
Sbjct: 1127 PITLDYT-SADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172


>gi|402699394|ref|ZP_10847373.1| DNA polymerase III subunit alpha [Pseudomonas fragi A22]
          Length = 1173

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1190 (42%), Positives = 745/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +I+  A    PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLIKTLAGMNMPAVAVTDQNNMCSLVKFYKAAMGGG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+      SRL LL  N  GY  L EL+S+ +I+    G+  I  EW+
Sbjct: 61   IKPICGADLWLSNKDPENPVSRLSLLAMNGVGYRNLTELISRGFIDGQRNGQVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+ +G  + AE  AR W  +FPD FY+E+QR K+PN  
Sbjct: 121  AEAA--EGLIMLSSAKEGEIGIALISGNTEEAEVLAREWMTVFPDRFYLEVQRTKRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+++ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EHLHAAVALAETVGAPLVATNDVRFIRQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A+ N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALVNSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ RL + L KD  E Y   +  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEDRLSVLLPKDTTEDYDARRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  GGLVTQFDKDDVESAGLVKFDFLGLRTLTVIDWALKTINRDRAKVDEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCANNNIDGDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G FT+LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFTDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             ++ R +L+A+++ A+K AE+T +  +         LF   D +
Sbjct: 891  RLGPFFHDEPKAWQASIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +   +    S LK   LR+      K +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTSLAESLRLKVVQ----SALKGDQLRWLGDLFKKHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y      K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-GVGAKATLQFGETWRIDPADSLIQALRDQFGRDNVFLQY 1172


>gi|145300046|ref|YP_001142887.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
 gi|142852818|gb|ABO91139.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
          Length = 1161

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1098 (44%), Positives = 727/1098 (66%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +IN ++ AAA +  PALA+TD  N+ G+++FY +A+ KGIK
Sbjct: 6    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 65

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ +     +  RL LL  +N+GY  +  L+S+ Y      GR  I  EWL  
Sbjct: 66   PIVGADFWVQSSELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKEWL-- 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   GD+G  +  G   + E+    +   FPD +Y+E+ R  +P+    
Sbjct: 124  TDHAKGVIVLSGGREGDVGKFLLKGNRQMTESCLAFYQTHFPDAYYLELLRTGRPDEEVY 183

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+   LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 184  LHMAVAIATEFELPVVATNEVVFLNAEDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 243

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL++KSK GL
Sbjct: 244  SQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVAKSKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 303  EERLAFLFPDPAVRAVKRGEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V D
Sbjct: 363  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 423  MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
             +L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 481  LKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDSGNHPV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK +++
Sbjct: 541  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIHDKKSFD 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 601  LLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGK 660

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK  +
Sbjct: 661  EAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPA 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 721  EMAKQRSGFEEGAVKNGIDGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 781  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI++ R + G F +LFDF  R+D K IN+R++  LI SGA D   
Sbjct: 835  YGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKINKRVMEKLILSGAMDRLG 894

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F     + +++K+   +  VP W  K  L
Sbjct: 895  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTQEIDDVKK--AFANVPHWPDKVWL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 953  EGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1012

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1013 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1072

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1073 DINDARERFARAIRISLD 1090


>gi|313109045|ref|ZP_07795017.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016]
 gi|386057373|ref|YP_005973895.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa M18]
 gi|386067675|ref|YP_005982979.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa NCGM2.S1]
 gi|424939546|ref|ZP_18355309.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa NCMG1179]
 gi|310881519|gb|EFQ40113.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016]
 gi|346055992|dbj|GAA15875.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa NCMG1179]
 gi|347303679|gb|AEO73793.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa M18]
 gi|348036234|dbj|BAK91594.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa NCGM2.S1]
          Length = 1185

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1187 (42%), Positives = 748/1187 (63%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 13   MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 72

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 73   IKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWV 132

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 133  KEAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 190

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 191  EHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 250

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 251  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 310

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ ++  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 311  GLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 370

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 371  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 430

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 431  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 488

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 489  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 548

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 549  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 608

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 609  TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 668

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 669  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 728

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 729  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 788

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 789  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 842

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 843  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 902

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 903  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 962

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 963  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1022

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1023 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1082

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   +      +  +LK   LR+      + +   
Sbjct: 1083 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFNRHRGSC 1138

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y  +   K  ++F  +++V P DDL  AL +  G  N  + Y
Sbjct: 1139 PITLDYT-SADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1184


>gi|107103154|ref|ZP_01367072.1| hypothetical protein PaerPA_01004223 [Pseudomonas aeruginosa PACS2]
          Length = 1173

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1187 (42%), Positives = 748/1187 (63%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 61   IKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 121  KEAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ ++  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKRGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 777  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 831  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 891  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 951  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   +      +  +LK   LR+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFNRHRGSC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y  +   K  ++F  +++V P DDL  AL +  G  N  + Y
Sbjct: 1127 PITLDYT-SADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172


>gi|238784895|ref|ZP_04628895.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970]
 gi|238714212|gb|EEQ06224.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970]
          Length = 1171

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1158 (43%), Positives = 746/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL +
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIR 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FP ++Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFILRGNQIQVDQCLEFYQEHFPGSYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT K ++  DFL+ KSK GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGK-MSTEDFLVEKSKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLELLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 372  GRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  RK  G F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q  +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPPWQEQIVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|15598836|ref|NP_252330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAO1]
 gi|116051637|ref|YP_789524.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890135|ref|YP_002438999.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa LESB58]
 gi|254242338|ref|ZP_04935660.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192]
 gi|296387855|ref|ZP_06877330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAb1]
 gi|392982636|ref|YP_006481223.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa DK2]
 gi|416854813|ref|ZP_11911143.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa 138244]
 gi|416873825|ref|ZP_11917728.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa 152504]
 gi|418586125|ref|ZP_13150171.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa MPAO1/P1]
 gi|418589447|ref|ZP_13153369.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa MPAO1/P2]
 gi|419754768|ref|ZP_14281126.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PADK2_CF510]
 gi|421152551|ref|ZP_15612131.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa ATCC 14886]
 gi|421158567|ref|ZP_15617815.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa ATCC 25324]
 gi|421166128|ref|ZP_15624396.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa ATCC 700888]
 gi|421173122|ref|ZP_15630876.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa CI27]
 gi|421179196|ref|ZP_15636792.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa E2]
 gi|421518183|ref|ZP_15964857.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAO579]
 gi|14194674|sp|Q9HXZ1.1|DPO3A_PSEAE RecName: Full=DNA polymerase III subunit alpha
 gi|9949800|gb|AAG07028.1|AE004784_1 DNA polymerase III, alpha chain [Pseudomonas aeruginosa PAO1]
 gi|13992731|gb|AAG16710.2| DNA polymerase III [Pseudomonas aeruginosa]
 gi|115586858|gb|ABJ12873.1| DNA polymerase III, alpha subunit [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195716|gb|EAZ59779.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192]
 gi|218770358|emb|CAW26123.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa LESB58]
 gi|334843562|gb|EGM22149.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa 138244]
 gi|334844239|gb|EGM22816.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa 152504]
 gi|375043799|gb|EHS36415.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa MPAO1/P1]
 gi|375051681|gb|EHS44147.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa MPAO1/P2]
 gi|384398586|gb|EIE44991.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PADK2_CF510]
 gi|392318141|gb|AFM63521.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa DK2]
 gi|404347665|gb|EJZ74014.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAO579]
 gi|404525311|gb|EKA35587.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa ATCC 14886]
 gi|404536423|gb|EKA46063.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa CI27]
 gi|404539105|gb|EKA48610.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa ATCC 700888]
 gi|404547439|gb|EKA56437.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa E2]
 gi|404549508|gb|EKA58366.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa ATCC 25324]
 gi|453047353|gb|EME95067.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PA21_ST175]
          Length = 1173

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1187 (42%), Positives = 748/1187 (63%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 61   IKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 121  KEAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ ++  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 777  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 831  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 891  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 951  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   +      +  +LK   LR+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFNRHRGSC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y  +   K  ++F  +++V P DDL  AL +  G  N  + Y
Sbjct: 1127 PITLDYT-SADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172


>gi|451987780|ref|ZP_21935932.1| DNA polymerase III alpha subunit [Pseudomonas aeruginosa 18A]
 gi|451754539|emb|CCQ88455.1| DNA polymerase III alpha subunit [Pseudomonas aeruginosa 18A]
          Length = 1185

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1187 (42%), Positives = 748/1187 (63%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 13   MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 72

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 73   IKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWV 132

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 133  KEAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 190

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 191  EHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 250

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 251  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 310

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ ++  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 311  GLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 370

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 371  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 430

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 431  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 488

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 489  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 548

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 549  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 608

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 609  TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 668

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 669  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 728

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 729  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 788

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 789  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 842

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 843  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 902

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 903  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 962

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 963  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1022

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1023 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1082

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   +      +  +LK   LR+      + +   
Sbjct: 1083 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFSRHRGSC 1138

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y  +   K  ++F  +++V P DDL  AL +  G  N  + Y
Sbjct: 1139 PITLDYT-SADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1184


>gi|307546379|ref|YP_003898858.1| DNA polymerase III subunit alpha [Halomonas elongata DSM 2581]
 gi|307218403|emb|CBV43673.1| DNA polymerase III, alpha subunit [Halomonas elongata DSM 2581]
          Length = 1169

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1166 (42%), Positives = 729/1166 (62%), Gaps = 41/1166 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HSE+S++DGL+R+  +I+AA     PALA+TD +NLF ++K+Y  A   G
Sbjct: 1    MTTPFVHLRVHSEFSLVDGLIRLKPLIKAAVEQGTPALALTDEANLFALVKYYTGAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KP+IG D+W+ N  + + P RL LL  +  GY  L EL+S+ ++E    GRA +   W+
Sbjct: 61   LKPLIGSDLWLANPHDEEHPYRLTLLAMDATGYRNLTELISRGWVEGQRQGRALLERSWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                  +GLIALSG   GDIG  + +  +  A      W+  FP  +Y+E+ R  +    
Sbjct: 121  MAQS--EGLIALSGGREGDIGRHLLSDHHAEARALLDEWNAAFPGRYYLELTRTGRALEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   +++A     P+VAT+ ++FL++ +F AHE R  I EG+ L + +R + +T+EQ 
Sbjct: 179  ECVHLSVDLAVETQTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERHYTEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF DIP A++N++ IA RCN+ +  G+  LP++  P+ +   +F    S  
Sbjct: 239  LKTPEEMAELFSDIPEALENSVMIAARCNVDVRLGEIFLPEYGIPEGMTQEEFFRKISHD 298

Query: 301  GLKKRLLNLY------KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
            GL +RL  LY      +D   Y     RY+KRL FE++ I++M F GYFLIV DFIQWAK
Sbjct: 299  GLTERLDFLYPAERYPRDGAEYAEIDARYRKRLDFELDIILQMGFPGYFLIVMDFIQWAK 358

Query: 355  NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
            +N +PVGPGRGSGA SLVAY+  ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC E RD
Sbjct: 359  DNDVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRD 418

Query: 415  RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
            RVI+YV +RYG++AVSQIVTFGTMAAK  +RDV R     YS  D +SKLIPF+ G  +T
Sbjct: 419  RVIEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVG--MT 476

Query: 475  LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
            L  AI++EPQL E ++ +EE +++ E+A ++EGI R  G HAGGV+IAP+KL +F PL  
Sbjct: 477  LGKAIEDEPQLKEFLEADEEAQEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPLLC 536

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLP 592
             E  +G+  QYDK+DIE+ GL+KFDFLGL TL+I+D  +  + K+        LN   +P
Sbjct: 537  DEDGSGLRVQYDKNDIEDAGLVKFDFLGLRTLTIIDWAVEMVDKVRAARGEEPLNIDAIP 596

Query: 593  LNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
            L+D  T+++LKKA T AVFQLES+GMK ++K   PD  E++IAL++L+RPGP+   ++ +
Sbjct: 597  LDDVPTFDMLKKAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPGPLQSGMVDD 656

Query: 651  FCRRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            F  RKHG    +YP P       K VL  TYGI++YQEQVMQIAQ++ GYSLGQAD+LRR
Sbjct: 657  FINRKHGRAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVMAGYSLGQADMLRR 716

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM + R  F  G  + G+ K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY 
Sbjct: 717  AMGKKKPEEMAKQRAGFMEGCAENGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQ 776

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TA+LK HY   FMAA LS  MD+ +K+  L+++  ++ GL++ PPN+N+  Y F   +++
Sbjct: 777  TAWLKAHYPGPFMAAVLSTEMDNLDKVVPLIEEC-RSLGLTVTPPNVNVGGYKF--TVDA 833

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLIN 883
            +G   ++ YGLGAI+G G+  I AIV  R+  G F +LFDF +R+D + +N+R + +LI 
Sbjct: 834  EG---RVIYGLGAIRGVGEGPIGAIVEAREAEGDFRDLFDFCRRVDPQRMNKRTLEALIR 890

Query: 884  SGAFDCFNEKRYMLVASIDVALKNA--EKTKKFINQLSLFKNDDNNNLKEYLNYV----- 936
            +GA D     R +L AS+D ALK A   +T + +  + +F     N   +          
Sbjct: 891  AGALDNLGPSRAVLAASLDDALKAAAQSQTNQNLGMMDMFGEAFANEPDDDAADAYADYR 950

Query: 937  KVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITE 995
            +V  WS K+ L  EK  LG  L+ H    YE E+ +F+   + +LKP+     V+G++  
Sbjct: 951  RVRDWSDKERLAGEKDTLGLYLTGHPIDEYEHELSRFVSTRIVDLKPSREPQRVAGLVVG 1010

Query: 996  LKLKTTYRGKILIIV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
            ++   + RG  +  V +DD +  +E  +  +L++  +  +  +++LI+ G+V  D +   
Sbjct: 1011 VRTMKSKRGDTMAFVTLDDRTGRIEASLFGELFDSLRGRIDTDQVLIIEGEVSTDDYSGG 1070

Query: 1055 IRINAEKIFDINVARILYGKKFSVMFNRTFN----ISILKKILLRFKCKNGLPFVLYYCI 1110
            +R+  + +  +  AR  YG+   +  +        +  L+  L  +    GLP  L Y  
Sbjct: 1071 LRLRGKDVTLMVDARTRYGQAVELSLDGAAVNGRLVDSLRDSLAPYCNGEGLPVRLRYRN 1130

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLAL 1136
             ++  + ++    ++VQP D+L +AL
Sbjct: 1131 AEATGW-LELAEQWRVQPTDELLIAL 1155


>gi|238796624|ref|ZP_04640131.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969]
 gi|238719602|gb|EEQ11411.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969]
          Length = 1171

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1158 (43%), Positives = 745/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  G+K
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGVK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FPD++Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGRFILRGNQAQVDQCLEFYQEHFPDSYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ KSK GL
Sbjct: 253  DEEQMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKSKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE    ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLELLFPDPEERAQKRAEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 372  GRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL D+ +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDQKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  RK  G F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q  +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPPWQEQIVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|197286116|ref|YP_002151988.1| DNA polymerase III subunit alpha [Proteus mirabilis HI4320]
 gi|425069020|ref|ZP_18472136.1| DNA polymerase III subunit alpha [Proteus mirabilis WGLW6]
 gi|425071451|ref|ZP_18474557.1| DNA polymerase III subunit alpha [Proteus mirabilis WGLW4]
 gi|194683603|emb|CAR44494.1| DNA polymerase III, alpha chain [Proteus mirabilis HI4320]
 gi|404598318|gb|EKA98797.1| DNA polymerase III subunit alpha [Proteus mirabilis WGLW6]
 gi|404599258|gb|EKA99718.1| DNA polymerase III subunit alpha [Proteus mirabilis WGLW4]
          Length = 1160

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1161 (43%), Positives = 748/1161 (64%), Gaps = 37/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++  A+   PA AITD +NL G++KFY +A+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G DV++  E+   + + L +L ++N GY  L  L+S+AY          I+ EWL  
Sbjct: 64   PIVGADVYLETELLGDEYAHLTILARDNVGYQNLTLLISEAYKHGYGAAGPVIKQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y++GL+ LSG  +GD+G  +  G   + E     +   FPD++Y+E+ R  +P+    
Sbjct: 122  TTYKEGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            + + + +AS   LP+VAT+ ++FL   +F AHE+R  I +G  LS+ KR K ++ +Q  +
Sbjct: 182  LHEAVALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPKHYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  +++  DFLI KSK GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLIKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+  +  +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V D
Sbjct: 361  GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K +     ++ + L D+ +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDISAISLTDQRSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGV 658

Query: 658  EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD + +      VL  TYG+++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAIV  R + G F ++FD   R + K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S++ ALK A++  K   I Q  +F        +   +Y  VP W  +  L  
Sbjct: 893  PHRAALMSSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQVERSYANVPKWPDQVVLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++     L +L PT       V+G++   K+ TT RG 
Sbjct: 953  ERETLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLASKVFTTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +E+++ +   +K +++L+++ +LI +G+V  D F   +++   ++ D
Sbjct: 1013 RIGICTLDDRSGRLEIMLFSDALDKYQHLLEQDRILIATGQVSFDDFNGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            IN AR  Y +  ++ + +R  N  +L ++  +L       +P  LY+  + +    ++F 
Sbjct: 1073 INEAREKYARGLAISLSDRQINEQLLNRLRGVLEPHRSGTIPVHLYFQKHDACA-RLRFG 1131

Query: 1122 LNYKVQPID----DLKLALIN 1138
              ++V P D    DL+  L N
Sbjct: 1132 ATWRVTPTDMLLTDLRTLLGN 1152


>gi|398864656|ref|ZP_10620188.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM78]
 gi|398244774|gb|EJN30313.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM78]
          Length = 1173

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1188 (42%), Positives = 745/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLVMNAAGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    DGLI LS A  G+IG A+ +G  D AEN AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--SDGLIMLSAAKEGEIGQAMLSGNPDEAENLAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKIGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEAKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +R+  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKLHAKDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMDYT-SPDAKALLQFGEGWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|408373510|ref|ZP_11171206.1| DNA polymerase III subunit alpha [Alcanivorax hongdengensis A-11-3]
 gi|407766678|gb|EKF75119.1| DNA polymerase III subunit alpha [Alcanivorax hongdengensis A-11-3]
          Length = 1167

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1161 (42%), Positives = 737/1161 (63%), Gaps = 45/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLH++YS++DG++R+ ++I++ A    PA+A+TD SNLF +IKFYK+A   GIK
Sbjct: 4    PRFVHLRLHTDYSLVDGVVRVKELIKSCAAQQMPAVAVTDDSNLFALIKFYKAAMGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D+W+ +    ++P+ L  LV+N  GY  L  L+S+A+  N + GRA ++ EWL +
Sbjct: 64   PIMGADLWVQSH-HLEEPTPLSFLVQNEVGYQNLTLLISRAWQTNQDRGRALVKAEWLAE 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LS A  G++G  +   +   A   A   + I+PD FY+E+QR  +P     
Sbjct: 123  --LNEGLIVLSAASHGEVGQLLLAEKAREARELAAHLAAIYPDRFYLEVQRTSRPGDEDC 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A  + LP+VAT+ ++F+++ +F AHE R CI +G  L + +R KK+++EQ  K
Sbjct: 181  LHATVALAGELGLPVVATNDVRFIRREDFEAHEARVCIHDGNTLEDPRRPKKYSEEQYLK 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  +M++LF D+P A+QNT+EIA+RC L +  G+  LP FP P+ + I  +    S+ GL
Sbjct: 241  SADQMVELFADLPEALQNTVEIARRCTLDIRLGENFLPDFPIPEGMTIEQYFEHVSRQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            + RL  L  D +    EK + Y  RL+FE++ I +M F GYFLIV+DFIQW K+N +PVG
Sbjct: 301  EDRLKALLDDSDPAYAEKRKPYDDRLKFELDIINQMGFPGYFLIVADFIQWGKDNEVPVG 360

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E RDRVI YV 
Sbjct: 361  PGRGSGAGSLVAYALKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDRVINYVA 420

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            D+YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP  PG  +TL  A+++
Sbjct: 421  DKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGTPG--MTLEKALEQ 478

Query: 482  EPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQE 536
            E  L E + ++     E   ++ E+A+++EG+ RNVG HAGGV+IAP KL +F PLY +E
Sbjct: 479  EETLREFLSSDENSDRESANEIWEMARKLEGLTRNVGKHAGGVVIAPGKLTDFAPLYCEE 538

Query: 537  GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYF--IKKINTKTTNFSLNKLPLN 594
              T +++QYDKDD+E  GL+KFDFLGL TL+I+D  +    +K+         ++ +PL+
Sbjct: 539  DGTNLVTQYDKDDVEAAGLVKFDFLGLKTLTIIDWAVKAANVKRQREGQDELVIDHIPLD 598

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  +++LLK+ +T AVFQLESQGMK ++K+ KPD FE+IIAL++LYRPGP++  ++ NF 
Sbjct: 599  DSGSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRPGPLESGMVDNFV 658

Query: 653  RRKHG-EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E   YPDP+ +      +L  +YG+++YQEQVMQIAQ+L GY+LG AD+LRRA+
Sbjct: 659  NRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQVLAGYTLGGADMLRRAM 718

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL++Y TA
Sbjct: 719  GKKKPEEMAKQRAIFEEGAKGQGVDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVAYQTA 778

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA +S  M +T+K+   + D  KT GL +LPP++N   Y F    + D 
Sbjct: 779  WLKVHYPAEFMAATISADMQNTDKVVTFI-DECKTMGLQVLPPDVNSCGYRFTVNPQGD- 836

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKF--GFFTNLFDFTKRIDKKYINRRIINSLINS 884
                I YGLGAIKG G+  I+AIV+ R    G F +LFDF +RID K INRR + +++ +
Sbjct: 837  ----IVYGLGAIKGLGEGPIDAIVSARDDGKGDFKDLFDFCRRIDLKKINRRSLEAMVRA 892

Query: 885  GAFDCFN-----EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVK 937
            G  D          R  L+A++  A+  A++  +      + +F   D +     + +  
Sbjct: 893  GVLDKLGPNGDFHDRATLLATLPDAIAAADQDARNEAAGMMDMFGAVDESPATA-VAWKP 951

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIIT 994
               W+    L  E+  LG  L+ H    YETE+ QF+   L+ L+PT    + TV+G++ 
Sbjct: 952  ARHWNDDTRLNGERDTLGLFLTGHPIDQYETEVMQFVSARLNALQPTGKGEAATVAGLVV 1011

Query: 995  ELKLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
             L++  + R   ++  + +DD +  VEV +  + + +  +I++++ LLI  G V  D + 
Sbjct: 1012 ALRITRSKRSGERMAFVTLDDKTGRVEVSVFGKTFAQYGDIVQKDTLLIFKGGVRSDDYT 1071

Query: 1053 KNIRINAEKIFDINVARILYGKKFSVMFNRTFNIS-ILKKILLRFKCKNGLPFVLYYCIN 1111
                + A+++ D+  AR  Y ++  V       ++  L+K L  ++  N  P VL    +
Sbjct: 1072 GGFNLVADEVMDMRQARETYARRLRVAVPAQDALADSLQKALGPYQGGN-TP-VLLDVAH 1129

Query: 1112 KSIKYEMKFPLNYKVQPIDDL 1132
            ++    +    ++KV P D L
Sbjct: 1130 QAADATLWLGDSWKVSPHDSL 1150


>gi|238763963|ref|ZP_04624919.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638]
 gi|238697780|gb|EEP90541.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638]
          Length = 1171

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1158 (43%), Positives = 749/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G +   +     + + FP ++Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFILRGNHTQVDLCLEFYQEHFPGSYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 372  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL+DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 670  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPE 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSIFEDGAKSQGVEGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA++  RK  G+F  LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT        +G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIASRVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|418357912|ref|ZP_12960601.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida 01-B526]
 gi|356688824|gb|EHI53373.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida 01-B526]
          Length = 1159

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1098 (44%), Positives = 727/1098 (66%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +IN ++ AAA +  PALA+TD  N+ G+++FY +A+ KGIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ +     +  RL LL  +N+GY  +  L+S+ Y      GR  I  EWL  
Sbjct: 64   PIVGADFWVQSSELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   GD+G  +  G   + E+    +   FPD +Y+E+ R  +P+    
Sbjct: 122  TDHAKGVIVLSGGREGDVGKFLLKGNRQMTESCLAFYQTHFPDAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+   LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVAIATEFELPVVATNEVVFLNAEDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL++KSK GL
Sbjct: 242  SQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDPAVRAVKRGEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
             +L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  LKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDSGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIHDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGK 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK  +
Sbjct: 659  EAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPA 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSGFEEGAVKNGIDGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI++ R + G F +LFDF  R+D K IN+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKINKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F     + +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTQEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|420138161|ref|ZP_14646102.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa CIG1]
 gi|403249144|gb|EJY62659.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa CIG1]
          Length = 1173

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1187 (42%), Positives = 747/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 61   IKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 121  KEAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ ++  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 777  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 831  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 891  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 951  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   +      +  +LK   LR+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFNRHRGSC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y  +   K   +F  +++V P DDL  AL +  G  N  + Y
Sbjct: 1127 PITLDYT-SADAKALRQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172


>gi|423205645|ref|ZP_17192201.1| DNA polymerase III subunit alpha [Aeromonas veronii AMC34]
 gi|404623920|gb|EKB20769.1| DNA polymerase III subunit alpha [Aeromonas veronii AMC34]
          Length = 1159

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1098 (44%), Positives = 727/1098 (66%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +IN ++ AAA +  PALA+TD  N+ G+++FY +A+ KGIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ ++    +  RL LL  +N+GY  +  L+S+ Y      GR  I   WL +
Sbjct: 64   PIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKSWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   GD+G  +  G   + E     +   FPD +Y+E+ R  +P+    
Sbjct: 124  --HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA    LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVAIAIEFELPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL++KSK GL
Sbjct: 242  SQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPQVRAERRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGN 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI++ R + G F +LFDF  R+D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F    ++ +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y +E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|411010324|ref|ZP_11386653.1| DNA polymerase III subunit alpha [Aeromonas aquariorum AAK1]
 gi|423197715|ref|ZP_17184298.1| DNA polymerase III subunit alpha [Aeromonas hydrophila SSU]
 gi|404631403|gb|EKB28039.1| DNA polymerase III subunit alpha [Aeromonas hydrophila SSU]
          Length = 1159

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1098 (44%), Positives = 726/1098 (66%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+H+++S++DGL +IN ++ AAA D  PALA+TD  N+ G+++FY +A+ KGIK
Sbjct: 4    PRFIHLRVHTDFSMVDGLQKINPIVGAAAADNMPALALTDQMNMCGLVRFYGAAHGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D W+ +     +  RL LL  +N+GY  +  L+S+ Y      GR  I  EWL  
Sbjct: 64   PLVGADFWVQSSELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++  G+I LSG   GD+G  +  G   + E     +   FPD +Y+E+ R  +P+    
Sbjct: 122  VEHAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +N+AS   LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVNLASEFALPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL++KSK GL
Sbjct: 242  SQDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKRSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGN 658

Query: 658  EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD + +      +L  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAGFEEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI+  R + G F +LFDF  R+D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIDAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F    ++ +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|407793686|ref|ZP_11140718.1| DNA polymerase III subunit alpha [Idiomarina xiamenensis 10-D-4]
 gi|407214385|gb|EKE84233.1| DNA polymerase III subunit alpha [Idiomarina xiamenensis 10-D-4]
          Length = 1157

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1163 (43%), Positives = 739/1163 (63%), Gaps = 45/1163 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HS++S++DGL ++  +  AAA     ALAITD  N+ G++++Y++A+ +G+K
Sbjct: 4    PGFVHLRIHSDFSMVDGLPKVGAICAAAAEQQMVALAITDQMNMCGLVRYYETAHKQGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D+WI N  E ++P RL  L  NN+GY  + +LLSKAY+     GR  +  +WL  
Sbjct: 64   PIIGADLWINNAEEPQQPFRLTALAMNNDGYQSIIQLLSKAYLRGHVAGRPVVERDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAV-QNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
              + DG++ LSGA  GD+G A+ QN +    E  A  + + F D +YIE+ R  +P    
Sbjct: 122  AAHNDGVLLLSGAREGDVGKALLQNNQPACDEAIAF-YQQHFADRYYIELIRTGRPQEED 180

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +   + +A    LP+VAT+ + FL+  +F  HE+R  I +G  L + +R K+++++Q  
Sbjct: 181  YLHAAVRLAGERQLPVVATNEVVFLQADDFEPHEIRVAIHDGYTLDDRRRPKRYSEQQYL 240

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            +++++M  LF DIP A+ NT+EIAKRCN+ +  G+  LP FPT  +++I D+L+  S+ G
Sbjct: 241  RSEADMQALFEDIPEALSNTVEIAKRCNVTVRLGEYFLPDFPT-GDMSIADYLVKASREG 299

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L++RL  L+ D ++   ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K N IPVG
Sbjct: 300  LEERLQFLFPDEQLRAEQRPAYDERLQIELDVINQMGFPGYFLIVMEFIQWSKENHIPVG 359

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRD VI +V 
Sbjct: 360  PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDDVIDHVA 419

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            + YG+DAVSQI+TFGTMAAK AIRDVGRVL   Y F D ISKL+P  PG  +TL+ A + 
Sbjct: 420  ELYGRDAVSQIITFGTMAAKAAIRDVGRVLGHPYGFVDRISKLVPGDPG--MTLAKAFEL 477

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EP+L E  + +EEVR LI++A+ +EG+ RN G HAGGV+IAP+K+ +F PLY  E     
Sbjct: 478  EPRLVESYQQDEEVRDLIDMARILEGVTRNAGKHAGGVVIAPTKITDFSPLYCDEEGLNP 537

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTY 599
            ++Q+DK+D+E  GL+KFDFLGL TL+I+   +  +  ++         +  +PL+D   +
Sbjct: 538  VTQFDKNDVEAAGLVKFDFLGLRTLTIIKWALEMVNQRRQQAGQEAIDITAIPLDDAHCF 597

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG 657
             LLK+A T AVFQLES+GMK ++K   PD FE+IIAL++L+RPGP+   ++ NF  RKHG
Sbjct: 598  RLLKRAETTAVFQLESRGMKELIKRLLPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 658  -EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
             E   YPD        + +L  TYGI++YQEQVMQIAQ L GY+LG ADLLRRA+GKKK 
Sbjct: 658  REKIAYPDANYQHELLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKKKP 717

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM + R+ F+ GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++KTH
Sbjct: 718  EEMAKQREVFREGAANNNVDPELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTH 777

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + FMAA +S  MD+T+KI  LV D  +   L+ILPP++N+ +Y F     +    ++I
Sbjct: 778  YPAEFMAAVMSADMDNTDKIVTLV-DECERMQLTILPPDVNVGEYKF-----TVNDEQQI 831

Query: 832  RYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
             YG+GAIKG G++ IEAI+  RK G F +LFDF  R+D K +N+R++  L+ +GA D   
Sbjct: 832  VYGIGAIKGVGEAPIEAIIEARKDGPFRDLFDFCCRVDLKKLNKRVMERLVKAGAMDSLG 891

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLF-----KNDDNNNLKEYLNYVKVPSWSKK 944
              R  L+A+I  A+K AE+    + I Q  LF     + +D +N      +  VP W + 
Sbjct: 892  PHRASLMATIATAMKQAEQHAQAEAIGQNDLFGVLTVEPEDVDN-----QFAAVPEWPEP 946

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTT 1001
              L  E++ LG  L+ H    Y  E+R ++   L EL PT    + T +G++  +++ T 
Sbjct: 947  VWLDGERETLGLYLTGHPINRYRAELRHYVAGQLVELTPTGRDQTTTAAGLVIGVRVLTN 1006

Query: 1002 YRGKILIIV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             +G+   IV +DD S  V+V + +  YE+ +++L+ + +L V G+V  D F     I A 
Sbjct: 1007 KKGQRWAIVSLDDKSARVDVRLFSSDYEQYQHLLENDRILWVKGEVSFDEFSGGNTITAR 1066

Query: 1061 KIFDINVARILYGKKFSVMFNR----TFNISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
            ++  I  AR  Y ++  V  +     T  +  L++IL  ++     P    YC N+  + 
Sbjct: 1067 EVMTIEQARETYARRLVVDIDNQQLTTRWLDKLQQILTPYQA-GSCPLQFNYC-NEFAEA 1124

Query: 1117 EMKFPLNYKVQPIDDLKLALINL 1139
             +     + V P D+L   L NL
Sbjct: 1125 ALTVAPEWYVSPADELLYELRNL 1147


>gi|238759934|ref|ZP_04621088.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236]
 gi|238701841|gb|EEP94404.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236]
          Length = 1171

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1161 (43%), Positives = 754/1161 (64%), Gaps = 39/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA++ GIK
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGIK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN+GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNDGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRN---DIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            +K  +GLI LSG  +GD+G  +  G     D+  +F   + + FPD++Y+E+ R  +P+ 
Sbjct: 135  HK--EGLILLSGGRMGDVGKFMLRGNQAQVDLCLDF---YQEHFPDSYYLELIRTGRPDE 189

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q
Sbjct: 190  ENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQ 249

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              + + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK
Sbjct: 250  FMRDEEQMCELFADIPEALFNSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSK 308

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++R+  L+ DPE    ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +P
Sbjct: 309  QGLEERMELLFPDPEERAQKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVP 368

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++
Sbjct: 369  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEH 428

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A 
Sbjct: 429  VAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAF 486

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EPQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY      
Sbjct: 487  AAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGK 546

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
              ++Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++  T      +  +PL DK 
Sbjct: 547  NPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKK 606

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 607  SFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 666

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK
Sbjct: 667  HGREAISYPDIEWQHECLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKK 726

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
              +EM + R  F++GA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 727  NPAEMAKQRSVFEDGAKEQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 786

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  +G   
Sbjct: 787  AHYPAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG--- 840

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G++ IEA++  RK  G+F  LFD   R+D K +NRRI+  L+ SGAFD
Sbjct: 841  EIVYGIGAIKGVGEAPIEAMLDARKEGGYFKELFDLCARVDTKKLNRRILEKLVMSGAFD 900

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L++S+  ALK A++  K   I Q  +F    +   +   +Y  VP W ++  
Sbjct: 901  RLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPLWQEQIV 960

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T 
Sbjct: 961  LDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTTAVGLVIAARVMVTK 1020

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A +
Sbjct: 1021 RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARE 1080

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  +
Sbjct: 1081 LMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARL 1139

Query: 1119 KFPLNYKVQPIDDLKLALINL 1139
            +F   ++V P D L + L  L
Sbjct: 1140 RFGATWRVTPTDRLLIDLRTL 1160


>gi|423202598|ref|ZP_17189177.1| DNA polymerase III subunit alpha [Aeromonas veronii AER39]
 gi|404614794|gb|EKB11773.1| DNA polymerase III subunit alpha [Aeromonas veronii AER39]
          Length = 1159

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1098 (44%), Positives = 726/1098 (66%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +IN ++ AAA +  PALA+TD  N+ G+++FY +A+ KGIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ ++    +  RL LL  +N+GY  +  L+S+ Y      GR  I   WL +
Sbjct: 64   PIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKSWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   GD+G  +  G   + E     +   FPD +Y+E+ R  +P+    
Sbjct: 124  --HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+   LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVAIATEFELPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL++KSK GL
Sbjct: 242  SQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGN 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI+  R + G F +LFDF  R+D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIDAILIARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F    ++ +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y +E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|333901600|ref|YP_004475473.1| DNA polymerase III subunit alpha [Pseudomonas fulva 12-X]
 gi|333116865|gb|AEF23379.1| DNA polymerase III, alpha subunit [Pseudomonas fulva 12-X]
          Length = 1179

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1190 (42%), Positives = 744/1190 (62%), Gaps = 54/1190 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +++A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MAVSFVHLRLHTEYSLVDGLVRVKPLVKAVAGGGMPAVAVTDMSNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   +R+ LL  N  GY  L EL+S+ + E  +     I+ +W+
Sbjct: 61   IKPICGADIWLASADEDGPLTRMTLLAMNPKGYRNLTELISRGWSEGQSNDLVIIQRDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +GLIALSGA  G+IG A+ +G    AE   + W  +FP+ FY+E+QR  + N  
Sbjct: 121  KAAS--EGLIALSGAKEGEIGHALLDGELAKAEALLQEWLAVFPERFYLEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FLK+++F AHE R CI EG IL + +R + ++ +Q 
Sbjct: 179  EHVHAAVALADKTGAPLVATNDVRFLKQSDFEAHETRVCIGEGRILDDPRRPRIYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A+QNT+EIAKRCN++++ GK  LP FP P+ + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPDALQNTVEIAKRCNIEVQLGKYFLPDFPVPEGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y  +K  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYDAKKQVYIDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY   ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVQKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +K +EE  ++ +++ ++EGI+R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLKVDEEAAEIWDMSLKLEGIVRGTGKHAGGVVIAPTKLTDFAPIACDEEGA 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL------PL 593
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+   +  I + + +    +   L      PL
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETIHR-DQRAAGVAEEDLVNIDFIPL 595

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNF 651
            +DK TY +L+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F
Sbjct: 596  DDKPTYQMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDF 655

Query: 652  CRRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
              RKHG    +YP P       + VL  TYGI++YQEQVMQIAQ++GGY+LGQAD+LRRA
Sbjct: 656  INRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMGGYTLGQADMLRRA 715

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY T
Sbjct: 716  MGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQT 775

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
            A+LK HY + FMAA LS  M +T+K+ IL+++  ++  L I PP++N S++  F +    
Sbjct: 776  AWLKAHYPAPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVNASEFK-FTVSHDA 833

Query: 826  GKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
             + ++I YGLGA+KG G+  +EAIV  R+ G F +LFDF  R+D K IN+R + +LI SG
Sbjct: 834  NQTQRILYGLGAVKGVGEGPVEAIVEARQDGPFKDLFDFCSRVDLKRINKRTMEALIRSG 893

Query: 886  AFDCF---------------NEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNN 927
            A D                 +  R +L+A+++ A++ AE+T +  +   + LF     + 
Sbjct: 894  ALDRLGPHFHDEIKAYQANIDRNRAVLLAAMEEAVQAAEQTARSHDSGHMDLFGGVFASP 953

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K+ L  EK  LG  L+ H    YE+E+R+F    + +LKP    
Sbjct: 954  EADVYANHRKARELSLKERLKGEKDTLGLYLTGHPIDEYESEVRRFARQRIVDLKPARDT 1013

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             T++G+I  L++    +G K+  I +DD S  +E  +    +  N+ +L+ + L++V G+
Sbjct: 1014 QTIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFADAFASNQALLQSDALVVVEGE 1073

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  +  AR    +   V        + LK   LR+      + +
Sbjct: 1074 VSNDDFSGGMRLRAKRVMSLEEARTGLAESLRV----KVQAAALKGDRLRWLGELCQRHR 1129

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  L Y      K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1130 GACPITLDYT-GADAKALLQFGEEWRIDPADSLIQALRDQFGRENVFLQY 1178


>gi|355640016|ref|ZP_09051506.1| DNA polymerase III subunit alpha [Pseudomonas sp. 2_1_26]
 gi|354831536|gb|EHF15548.1| DNA polymerase III subunit alpha [Pseudomonas sp. 2_1_26]
          Length = 1173

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1187 (42%), Positives = 747/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 61   IKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 121  KEAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPCTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ ++  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 777  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 831  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 891  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 951  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   +      +  +LK   LR+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFNRHRGSC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y  +   K  ++F  +++V P DDL  AL +  G  N  + Y
Sbjct: 1127 PITLDYT-SADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172


>gi|317493173|ref|ZP_07951596.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918833|gb|EFV40169.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1160

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1158 (43%), Positives = 743/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL ++  +++  A    PA AITD +N+ G++KFY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVGPLVKKVAALGMPAFAITDHTNMCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV++ +E+   + S L +L  NN GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADVFVKSELLGDELSHLTILAANNTGYQNLTLLISHAYQRGYGADGPVIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +Y++GLI LSG   GD+G  +  G   +A      + + F D++Y+E+ R  +P+    
Sbjct: 122  VEYREGLILLSGGRQGDVGKMLLRGNQQLAHECVDFYQQYFADSYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 182  LHFAVALAEERELPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPKNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT   ++  DFL++KSK GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P +PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPEPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEDPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA + G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN  +Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGQYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNEGGHFKELFDLCARTDTKKLNRRMLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q+ +F        +   +Y  V  W  +  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYSSVAPWPAQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++ TT RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVVAARVMTTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +EV++     +K +++L+++ +LI SG+V  D F   +++ A ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIASGQVSFDDFSGGLKMIARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY  + + + +++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRDSLEPHRSGTIPVHLYYQRDNA-RAKLRFG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1132 AAWRVTPTDRLLVDLRTL 1149


>gi|406676013|ref|ZP_11083199.1| DNA polymerase III subunit alpha [Aeromonas veronii AMC35]
 gi|404626236|gb|EKB23046.1| DNA polymerase III subunit alpha [Aeromonas veronii AMC35]
          Length = 1159

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1098 (43%), Positives = 728/1098 (66%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +IN ++ AAA +  PALA+TD  N+ G+++FY +A+ KGIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ ++    +  RL LL  +N+GY  +  L+S+ Y      GR  I   WL +
Sbjct: 64   PIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKSWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   GD+G  +  G   + E     +   FP+ +Y+E+ R  +P+    
Sbjct: 124  --HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPNAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+   LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVAIATEFELPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL++KSK GL
Sbjct: 242  SQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGN 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI++ R + G F +LFDF  R+D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F    ++ +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y +E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|152987648|ref|YP_001346883.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PA7]
 gi|150962806|gb|ABR84831.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa PA7]
          Length = 1185

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1187 (42%), Positives = 745/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 13   MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 72

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 73   IKPICGADIWLASREEDGPLSRLSLLAMNARGYRNLTELISRGWSEGQRNGEIIIERDWV 132

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 133  KAAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 190

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+++ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 191  EHLHAAVALASRCNAPLVATNDVRFIRQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 250

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 251  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 310

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+  +  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 311  GLEERLEVLLPKDTPDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 370

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 371  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 430

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 431  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 488

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 489  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 548

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 549  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 608

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 609  TYALLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 668

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 669  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 728

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 729  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 788

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 789  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 842

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 843  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 902

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 903  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 962

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 963  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1022

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1023 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1082

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   +      +  +LK   LR+      + +   
Sbjct: 1083 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFNRHRGSC 1138

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y  +   K  ++F  +++V P DDL  AL +  G  N  + Y
Sbjct: 1139 PITLDYT-SADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1184


>gi|238792741|ref|ZP_04636372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909]
 gi|238727849|gb|EEQ19372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909]
          Length = 1171

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1158 (43%), Positives = 744/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +EI   + + L +L +NN GY  L  L+S+AY          I  +WL K
Sbjct: 75   PIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIK 134

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G     +     + + FP ++Y+E+ R  +P+    
Sbjct: 135  HK--EGLILLSGGRMGDVGKFMLRGNQAQVDQCLEFYQEHFPGSYYLELIRTGRPDEENY 192

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+ +++F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 193  LHAAVTLATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMR 252

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ KSK GL
Sbjct: 253  DEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVEKSKQGL 311

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 312  EERLEFLFPDPEVRVQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 371

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 372  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 431

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 432  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 489

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 490  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 549

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  K+  T      +  +PL DK +++
Sbjct: 550  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINAKRAKTGLEPIDIASIPLEDKKSFD 609

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 610  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 669

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +
Sbjct: 670  EALSYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPA 729

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 730  EMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 789

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP IN   Y+F   +  +G   +I 
Sbjct: 790  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPEINSGLYHFH--VNDEG---EIV 843

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G++ IEAI+  RK  G F +LFD   R+D K +NRRI+  LI SGAFD   
Sbjct: 844  YGIGAIKGVGEAPIEAILEARKEGGHFKDLFDLCARVDTKKLNRRILEKLIMSGAFDRLG 903

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q  +F    +   +   +Y  VP W ++  L  
Sbjct: 904  PHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPPWQEQIVLDG 963

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T RG 
Sbjct: 964  ERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGN 1023

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1024 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMD 1083

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY   +  +  ++F 
Sbjct: 1084 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQ-REDARARLRFG 1142

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D L + L  L
Sbjct: 1143 ATWRVTPTDRLLIDLRTL 1160


>gi|431931617|ref|YP_007244663.1| DNA-directed DNA polymerase III PolC [Thioflavicoccus mobilis 8321]
 gi|431829920|gb|AGA91033.1| DNA-directed DNA polymerase III PolC [Thioflavicoccus mobilis 8321]
          Length = 1196

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1166 (42%), Positives = 720/1166 (61%), Gaps = 52/1166 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  QF HL LHSEYS++DGL+RI  +++A A    PA+A+TDL NLF +++FY++A   G
Sbjct: 1    MDHQFTHLHLHSEYSLVDGLIRIKPLVKAVATAGMPAVAVTDLGNLFALVRFYRAALGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKP+ G ++W+ N  +  KP RL+LLV+N  GY  L  L+S+ Y+E  + G  ++R +W+
Sbjct: 61   IKPLAGAELWLANAQDANKPYRLVLLVQNGVGYRNLTRLVSRGYLEGQHLGLPQVRPDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLIALSG   GD+  A+  GR+D AE     W   F D +Y+E+ R  +    
Sbjct: 121  VEAA--EGLIALSGGIEGDVARAMAAGRHDTAERRLDDWLAAFGDRYYLEVTRTGRQGEA 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A    +P+VAT+ ++FL   +F AHE R CI EG  L + +R+++++ EQ 
Sbjct: 179  EYLAAAVELAGAKGVPVVATNDVRFLAAEDFEAHEARVCIHEGRTLDDPRRVRRYSPEQF 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  +M +LF D+P A++N++EIAKRCNL+L  G+  LP FP P    I  F   +S+ 
Sbjct: 239  LRTPRQMAELFADLPEALENSVEIAKRCNLELRLGESVLPAFPVPPETTIEAFFAERSRA 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL+ RL   +        E  R Y +RL+ E++ I +M F GYFLIV+DFIQWAK+N IP
Sbjct: 299  GLEWRLRRTFDTSAADFAEHRRVYDERLELELQVINQMGFPGYFLIVADFIQWAKDNGIP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DP+ ++LLFERFLNP R+SMPDFD+DFC E RDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYALKITDLDPIEHDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V  RYG+ AVSQI+TFGTMAAK  +RDVGRVL   Y F D ++K++PF+ G  +TL  A+
Sbjct: 419  VAQRYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKVAKMVPFELG--MTLKKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            +E   L    +++EEVR LI+LA+++EG+ RN G HAGGV+IAP++L +F PLY + G  
Sbjct: 477  EESEDLKAAYEDDEEVRGLIDLARKLEGLARNAGKHAGGVVIAPTELTDFAPLYCEPGGE 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN----- 594
             +++QYDKDD+E++GL+KFDFLGL TL+I+D   + ++ IN        ++ P++     
Sbjct: 537  NLVTQYDKDDVEQVGLVKFDFLGLRTLTIID---WALRTINAGRAE--RDEEPIDIALID 591

Query: 595  --DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
              D   + LLK+  T AVFQLES+GMK ++K+ KPD FE++ AL++L+RPGP+   ++ +
Sbjct: 592  PADPKAFALLKRCETTAVFQLESRGMKELIKKLKPDSFEDMTALVALFRPGPLQSGMVDD 651

Query: 651  FCRRKHGE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            F  RKHGE    YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKK
Sbjct: 652  FIARKHGEAAVAYPHPDLEPILKPTYGVILYQEQVMQIAQVLASYTLGGADLLRRAMGKK 711

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+  G++   A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 712  KVEEMDKQRAIFEQGAVARGVAASTATYIFDLMEKFAGYGFNKSHSAAYALVSYQTLWLK 771

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             +Y + FMAA LS  MD+T+K+  L+ D  +  GL+++PP IN S+Y F   I  +G   
Sbjct: 772  ANYPAAFMAAVLSADMDNTDKVVGLI-DECRAMGLTVIPPCINRSEYRF--TIADEG--- 825

Query: 830  KIRYGLGAIKGTGKSTIEA-IVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             + YG+GAIKG G++ IEA +   R+ G F +L+D  +RID +  NRR++ +LI +GA D
Sbjct: 826  TVVYGIGAIKGVGEAAIEATLAARRRGGAFRDLWDLCRRIDLQKANRRVLEALIRAGACD 885

Query: 889  CFNEKRYMLVASIDVALKNAEKTK--KFINQLSLF---KNDDNNNLKEYLNYVKVPSWSK 943
                 R  L+  + +ALK AE+    +   Q  LF      D       L  +    W  
Sbjct: 886  GLGPNRATLMVQLPLALKLAEQQHETQAAGQGDLFGAAAGADATEPDPQLVQLAQDEWED 945

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT-------YSCTVSGIITEL 996
            +Q L  EK+ LG  L+ H    YE EI       +  L  T          TV G++  +
Sbjct: 946  EQVLQGEKETLGLYLTGHPIDRYEAEIAAMTRCRIGALIETDRGRGERERRTVVGLVVGV 1005

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +   T RG++  + +DD +  +E     +LYE+ ++ L  + +L V+G +  D +  +  
Sbjct: 1006 RQAKTQRGRLGTVTLDDRTGRIEATCFAELYERVRDRLVPDAILAVTGTMSFDEYRDSWS 1065

Query: 1057 INAEKIFDINVARILYGKKFSVMFNRT---------FNISILKKILLRFKCKNGLPFVL- 1106
            + A+++  +  AR+       +  + +           ++ L++ L  F+   GLP  L 
Sbjct: 1066 LRADEVQTLEEARLTLADHLELTLDLSDPAAHRRGEATLAELREALTTFR-DEGLPVCLD 1124

Query: 1107 YYCINKSIKYEMKFPLNYKVQPIDDL 1132
            Y C     +  +    +++V P + L
Sbjct: 1125 YRC--PGARGRLLLGRDWRVSPSEAL 1148


>gi|254672044|emb|CBA04625.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha275]
          Length = 991

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/925 (51%), Positives = 637/925 (68%), Gaps = 13/925 (1%)

Query: 3   PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
           P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+    GIK
Sbjct: 4   PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 63  PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
           PI   DVWI N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64  PIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122 KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
            N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124 -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182

Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183 ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
           F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243 FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301 GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
           GL++R++ LY D      +   Y+KRL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303 GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361 GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
           GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363 GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422

Query: 421 KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
           +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K + L +A+K
Sbjct: 423 REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMK 482

Query: 481 EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483 AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541 IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
            +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542 PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGKIPLDDQAAYQ 599

Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
           + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600 IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661 NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
            Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660 QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721 FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
           F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720 FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781 LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
           +S  +D+T+++K    D  +  G+  LPP+IN S Y F P       + KIRY LGAIKG
Sbjct: 780 MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPY-----PNMKIRYALGAIKG 833

Query: 841 TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
           TG++ +E+I+  R+ G  FT L +F +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834 TGEAAVESIIAARQSGGKFTGLLNFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900 SIDVALKNAEKTKKFINQLSLFKND 924
           +ID+A+ NA++     NQ  LF++D
Sbjct: 894 NIDLAMDNADQKAANANQGGLFRHD 918


>gi|398984053|ref|ZP_10690362.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM24]
 gi|399011322|ref|ZP_10713654.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM16]
 gi|398118064|gb|EJM07804.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM16]
 gi|398156170|gb|EJM44594.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM24]
          Length = 1173

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1190 (42%), Positives = 741/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A      PA+A+TD +N+  ++KFYK+    G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKALTAMNMPAVAVTDQNNMCSLVKFYKNTMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +IE    G   +  EW+
Sbjct: 61   IKPICGADLWLSNKDPDAPLSRISLLVMNAKGYRNLTELISRGFIEGQRNGMIIVEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+  G    AE   R W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--NEGLIMLSAAKEGEIGMAMIGGNPAEAEALTREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EMI+LF DIP AI+NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMIELFSDIPDAIENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  DG  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNTSEFKF--TVNDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y ++ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YASHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|398843127|ref|ZP_10600277.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM102]
 gi|398103945|gb|EJL94104.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM102]
          Length = 1173

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1186 (42%), Positives = 745/1186 (62%), Gaps = 52/1186 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLANKDPDNALSRISLLAMNAVGYRNLTELISRGFIDGQRNGSVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G  D AE  AR W  +FPD FY+E+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLAMLSGNPDEAETLAREWMAVFPDRFYLEVQRTSRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A+ I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALATKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             ++ R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQASIDQNRAVLLNAMEGAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y+N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YVNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG-LP 1103
            V  D F   +R+  +++  +  AR    +   + +  +      L+ +   FK   G  P
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKLHTKDLKGDQLRWLGELFKRHRGACP 1127

Query: 1104 FVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
              + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1128 ITMEYT-SPDAKALLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|238897448|ref|YP_002923125.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa
            5AT (Acyrthosiphon pisum)]
 gi|229465203|gb|ACQ66977.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa
            5AT (Acyrthosiphon pisum)]
          Length = 1160

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1159 (44%), Positives = 744/1159 (64%), Gaps = 35/1159 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL +I  +++ AA    PALA+TD SN  G++KFY +A+  GIK
Sbjct: 4    PRFIHLSVHSDYSMIDGLTKIKPLVQKAAALGMPALALTDFSNFCGLVKFYGAAHKVGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ N       +RL LL +N  GY  +  L+S AY          I   WL K
Sbjct: 64   PIIGADFYVQNPALENNFARLTLLARNQEGYHNITLLISAAYQRGYGSLGPVIDRHWLIK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSGA +GD+G  +        +     +   FPDN+YIE+ R  + +    
Sbjct: 124  HK--EGLILLSGAKMGDLGQFILRENQSQIDQCLHFYQTHFPDNYYIELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   INIA    +P+VAT+ ++F+  ++F AHE+R  I  G  L++ KR + ++ +Q  +
Sbjct: 182  LHSAINIAEKHGIPVVATNHVRFMDPSDFDAHEIRVAINAGFTLADPKRPQNYSPQQFMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M +LF DIP A+ N++EIAKRCNL L  G+   PK+PT K ++  DFLI++S+ GL
Sbjct: 242  SEQDMCELFSDIPEALTNSVEIAKRCNLNLRLGEYFFPKYPTGK-MSTEDFLIARSQEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             KRL  L+ DPEI K ++  Y +RL  E++ I +M F GYFLIV +FIQWAK+N IPVGP
Sbjct: 301  GKRLEFLFSDPEIRKQKREAYDQRLALELQVINEMGFPGYFLIVMEFIQWAKDNHIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP RIS+PDFD+DFC E RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALQITDIDPLEFDLLFERFLNPERISLPDFDVDFCMEKRDAVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+++VSQI+TFGTMAAK  IRDVGRVL   YSF D I+KLIP   G  +TL  A   E
Sbjct: 421  MYGRESVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRIAKLIPLDLG--MTLEKAFVAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L +  + +EEVR L+++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PELTKAYEADEEVRSLLDMARKLEGVTRNAGKHAGGVVIAPTKMTDFAPLYCDSQGQNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKK--INTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+DIE +GL+KFDFLGL TL+++ K +  I +  I        ++ +PLND  ++ 
Sbjct: 539  TQFDKNDIEYVGLVKFDFLGLRTLTVIHKAVEMINQRIITQGAQPIDISLIPLNDPKSFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T A+FQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK G 
Sbjct: 599  VLQRSETTAIFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKQGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD     P  + VL  TYGI++YQEQVMQIAQ+L GYSLG+AD+LRRA+GKK   
Sbjct: 659  ETISYPDIEWQHPCLQPVLEPTYGIILYQEQVMQIAQVLSGYSLGEADILRRAMGKKDPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+NGA + G+    A +IF+ +EKFAGYGFNKSH+ AYALLSY T +LKTHY
Sbjct: 719  EMAKQRSIFENGAKEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYALLSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D     GL++LPP+IN   Y+F   + + G   KI 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVGLV-DECARMGLTMLPPDINSGFYHFH--VNAQG---KIV 832

Query: 833  YGLGAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IE+I+   R+ G F +LFDF  R  KK +NRRI+  LI SGA D   
Sbjct: 833  YGMGAIKGVGEGAIESILEARRQGGEFKDLFDFCARTAKKKLNRRILEKLIFSGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ ++  A+K AE+  K     Q  +F     +  K   +Y +VP W ++  L  
Sbjct: 893  PHRAALMHALQNAIKAAEQHAKAELTGQADMFGVLTQDPKKIEQSYAQVPPWQQQTVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EIR ++    L +L PT    + TV+G +   K+ TT RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIRHYVGSSRLQDLSPTPRGKNVTVAGFVVSAKVMTTKRGA 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +++++ N  +EK +++L+++ +LI  G++  D F   +++ A ++ D
Sbjct: 1013 RIGLCKLDDRSAHLDIMLFNDAFEKYQHLLQKDLILIARGQISFDDFNNGLKMTAHELMD 1072

Query: 1065 INVARILYGKKFSVMFNRTFNISI----LKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
            I+ AR  + +  ++  + T    +    L+ IL    C++G   + +Y   K+   +++F
Sbjct: 1073 ISEAREKHVRALAISVSHTQVNKVFFDKLRDILE--PCRSGSVKIHFYYQGKNASAKLRF 1130

Query: 1121 PLNYKVQPIDDLKLALINL 1139
              ++ + P + L + L NL
Sbjct: 1131 GTDWHITPTNRLLIDLRNL 1149


>gi|378949084|ref|YP_005206572.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens F113]
 gi|359759098|gb|AEV61177.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens F113]
          Length = 1173

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1190 (42%), Positives = 744/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G  + AE  AR W  +FPD FYIE+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYIEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EHLHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRALDDPRRSKNYSNQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEDRLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFQDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGELFKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y +    K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEY-VRPDAKAVLQFGEGWRIDPADALIQALRDQFGKDNVFLQY 1172


>gi|330807796|ref|YP_004352258.1| DNA polymerase III subunit alpha [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|423695582|ref|ZP_17670072.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Q8r1-96]
 gi|327375904|gb|AEA67254.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|388009549|gb|EIK70800.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Q8r1-96]
          Length = 1173

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1190 (42%), Positives = 744/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G  + AE  AR W  +FPD FYIE+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYIEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EHLHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRALDDPRRSKNYSNQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFQDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGELFKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y +    K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEY-VRPDAKAVLQFGEGWRIDPADALIQALRDQFGKDNVFLQY 1172


>gi|398902874|ref|ZP_10651328.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM50]
 gi|398177967|gb|EJM65628.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM50]
          Length = 1173

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1186 (42%), Positives = 743/1186 (62%), Gaps = 52/1186 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNALSRISLLAMNAVGYRNLTELISRGFIDGQRNGSVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G    AEN AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLAMLSGNPAEAENLAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKIGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLTVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             ++ R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQASIDQNRAVLLNAMEGAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y+N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YVNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG-LP 1103
            V  D F   +R+  +++  +  AR    +   + +  +      L+ +   FK   G  P
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKLHTKDLKGDQLRWLGELFKRHRGACP 1127

Query: 1104 FVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
              + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1128 ITMEYT-SPDAKALLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|399003083|ref|ZP_10705754.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM18]
 gi|398123487|gb|EJM13036.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM18]
          Length = 1173

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 741/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNATGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+  G  D AE  AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLAMLGGNPDEAETLAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKLGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLTVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEAREDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +      +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLHAKDLKGDQLRWLGELFKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKALLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|398998523|ref|ZP_10701296.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM21]
 gi|398120228|gb|EJM09895.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM21]
          Length = 1173

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1190 (42%), Positives = 745/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK++   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKASMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNALSRISLLAMNAVGYRNLTELISRGFIDGQRNGSVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G    AEN AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLAMLSGNPVEAENLAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKIGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEDRLTVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVDEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             ++ R +L+A+++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQASIDQNRAVLLAAMEGAIKAAEQTARTQDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y ++ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YASHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +++  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLKLRVKRVMSMEDARTNLAESLRL----KLQTKDLKNDQLRWLGELFKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKALLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|398859864|ref|ZP_10615529.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM79]
 gi|398235800|gb|EJN21607.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM79]
          Length = 1173

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1186 (42%), Positives = 743/1186 (62%), Gaps = 52/1186 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNSLSRISLLAMNAVGYRNLTELISRGFIDGQRNGSVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G  D AE  AR W  +FPD FY+E+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLAMLSGNPDEAETLAREWMAVFPDRFYLEVQRTSRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A+ I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAAKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLTVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             ++ R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQASIDQNRAVLLNAMEGAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG-LP 1103
            V  D F   +R+  +++  +  AR    +   + +  +      L+ +   FK   G  P
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKLHTKDLKGDQLRWLGELFKRHRGACP 1127

Query: 1104 FVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
              + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1128 ITMEYT-SPDAKALLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|389683306|ref|ZP_10174638.1| DNA polymerase III, alpha subunit [Pseudomonas chlororaphis O6]
 gi|388552819|gb|EIM16080.1| DNA polymerase III, alpha subunit [Pseudomonas chlororaphis O6]
          Length = 1174

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1191 (42%), Positives = 752/1191 (63%), Gaps = 61/1191 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++  A    PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLAGMGMPAVAVTDQNNMCSLVKFYKAAMGTG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+      SR+ LLV N  GY  L EL+S+ +I+    G+  I  EW+
Sbjct: 61   IKPICGADLWLSNKDPENPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G    AE  AR W  +FPD FY+E+QR  +PN  
Sbjct: 121  AEAA--EGLIMLSAAKEGEIGLALLSGDLQEAETLAREWMAVFPDRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHAAVALADKIGAPLVATNDVRFIKREDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP +P P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQVKKNLPDVNIDFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  KTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       + VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYDGLRPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTH+ + FMAA LS  M +T+K+ +L+++ +++  L +  P++N S + F   + +DG  
Sbjct: 777  KTHHPAPFMAAVLSADMHNTDKVVVLIEE-VRSMKLRLDAPDVNSSDFKF--TVNNDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YGLGAIKG G+  +EAIV  R + G F +LFDF  R+D K IN+R +++LI SGA 
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAIVEARAEGGPFKDLFDFCSRVDLKRINKRTLDALIRSGAL 890

Query: 888  DCF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDN 926
            D                 +  R +L+++++ A+K AE+T +  +         +F  +D 
Sbjct: 891  DRLGPYFHDELKAYQANIDRNRAVLLSALEEAVKAAEQTARTADSGHADLFGGVFVEEDA 950

Query: 927  NNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS 986
            +    Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP   
Sbjct: 951  DV---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIVDLKPARD 1007

Query: 987  C-TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044
              TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G
Sbjct: 1008 TQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEG 1067

Query: 1045 KVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KC 1098
            +V  D F   +R+  +++  +  AR    +   +      +   LK   LR+      + 
Sbjct: 1068 EVSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KVHTEALKGDQLRWLGELCKRH 1123

Query: 1099 KNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +   P  + Y   +  K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 RGACPISMEYT-KEDAKALLQFGEAWRIDPADALIQALRDQFGRDNVFLQY 1173


>gi|56412504|ref|YP_149579.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197361439|ref|YP_002141075.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
 gi|56126761|gb|AAV76267.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197092915|emb|CAR58344.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
          Length = 1160

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  DGLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--DGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKRLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|388258200|ref|ZP_10135378.1| DNA polymerase III subunit alpha [Cellvibrio sp. BR]
 gi|387938321|gb|EIK44874.1| DNA polymerase III subunit alpha [Cellvibrio sp. BR]
          Length = 1177

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1088 (44%), Positives = 713/1088 (65%), Gaps = 40/1088 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S+ D L+RI  +++  A    PA AITD +N +G+IKFYK+A + G+KPI
Sbjct: 6    FVHLRLHTEFSLSDSLVRIKALVKRVAELNMPACAITDQTNFYGLIKFYKAAQSAGVKPI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D WI +     KP+ + LL  N+ GY  + EL+S+A+ +    G A ++ EWL  ++
Sbjct: 66   AGSDFWIASTDSEGKPTLITLLAMNDQGYKNIIELISRAWRQGQQQGVAYLQREWL--SE 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
            + DG+IALSG  LGD+G+A+  GR   A+   + W + FP  FY+E+QR  + N    + 
Sbjct: 124  FSDGVIALSGGKLGDVGMALLGGRAAQAQELLQGWMQDFPGRFYLELQRTGRENDENHLH 183

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+ +N P+VAT+ ++FLK +EF  HE R CI+EG  L + +R ++++ +Q  ++ 
Sbjct: 184  AAVALAAEMNCPVVATNDVRFLKASEFEVHEARVCISEGRTLDDPRRERRYSDQQYLRSA 243

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF DIP AI NTIEIAKRC + ++ GK  LP++P P+ +   +F    S  GL +
Sbjct: 244  EEMAELFSDIPEAIANTIEIAKRCTITIQMGKYFLPEYPVPEGMTEAEFFRKISHEGLDQ 303

Query: 305  RLLN-LYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            RL   L K    Y   +  Y+ RL FE++ I +M F GYFLIV DFIQWAK++ IPVGPG
Sbjct: 304  RLERILDKSTADYAERRKVYEDRLNFELDIINQMGFPGYFLIVMDFIQWAKDHDIPVGPG 363

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI YV D 
Sbjct: 364  RGSGAGSLVAYSLKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVISYVADN 423

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP  PG  +TL+ A++EEP
Sbjct: 424  YGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPTPG--MTLAQALEEEP 481

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
            QL E I  + +  ++ E+A Q+EG+ RNVG HAGGV+IAP+KL +F PLY  E   G+++
Sbjct: 482  QLKEFIAVDGDAGEIWEMAVQLEGLTRNVGKHAGGVVIAPTKLTDFSPLYCDETGGGLVT 541

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKK--INTKTTNFSLNKLPLNDKDTYNL 601
            Q+DK D+EE GL+KFDFLGL TL+I+D     I K  I        ++ +PL+D  T+ L
Sbjct: 542  QFDKGDVEEAGLVKFDFLGLRTLTIIDWARIMIDKQRIKKGEAPLDISAIPLDDPKTFGL 601

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE- 658
            LK+A T AVFQLES+GMK+++K  +PD  E++IAL++L+RPGP++  ++ +F  RKHG  
Sbjct: 602  LKRAETTAVFQLESRGMKDLIKRLQPDNIEDLIALVALFRPGPLESGMVDDFINRKHGRA 661

Query: 659  YFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
               YPD +      K VL  TYG++VYQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  E
Sbjct: 662  QVAYPDAKFQHQSLKPVLEPTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 721

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYA++SY TA+LK HY 
Sbjct: 722  MAKQREVFESGAKNQGVDPELAIKIFDLVEKFAGYGFNKSHSAAYAIVSYQTAWLKAHYP 781

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD T+K+   +++  +T  L +LPP++N  +++F   ++  G   +I Y
Sbjct: 782  AHFMAATMSSDMDKTDKVVTFIEEC-RTMKLKLLPPDVNSGEFHF--TVDDAG---RIIY 835

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF-- 890
            GLGAIKG G+  +E+I+  R + G F +LFDF  R+D + +N+R + ++I SGA D    
Sbjct: 836  GLGAIKGLGEGPVESIIAARNEGGPFKDLFDFCARVDPRKVNKRALEAIIRSGAADNLGP 895

Query: 891  ---------NEKRYMLVASIDVALKNAEKTKKFIN--QLSLFK---NDDNNNLKEYLNYV 936
                     +  R ++ A++  A+K AE+     N   + LF      D +N   Y ++ 
Sbjct: 896  TANTPQHNIDHDRAVMFAAMSEAVKTAEQAMANTNAGMMDLFGAVMASDESNSDVYADFR 955

Query: 937  KVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY-SCTVSGIITE 995
            +V +W+ K+ L  EK+ LG  L+ H    YE+E+   +   +S LKP   S T+SG++  
Sbjct: 956  RVRTWTMKERLHAEKETLGLYLTGHPIDEYESELTHLVSSRISNLKPEKGSQTISGLVIS 1015

Query: 996  LKLKTTYRGK-ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
             ++  T RG  + I+ +DD +  ++V +  +++   +++L ++ LL+VSG+V  D F   
Sbjct: 1016 QRVVKTKRGDNMAIVTLDDRTGRMDVTLFAEVFNAARDVLLKDGLLVVSGQVRYDDFSGM 1075

Query: 1055 IRINAEKI 1062
            ++++A+ I
Sbjct: 1076 LKMSADNI 1083


>gi|70728573|ref|YP_258322.1| DNA polymerase III subunit alpha [Pseudomonas protegens Pf-5]
 gi|68342872|gb|AAY90478.1| DNA polymerase III, alpha subunit [Pseudomonas protegens Pf-5]
          Length = 1173

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1189 (42%), Positives = 752/1189 (63%), Gaps = 58/1189 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A A    PA+A+TD +N+  ++KFYK++   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKALAGMGMPAVAVTDQNNMCSLVKFYKTSMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G+  I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+  G  ++AE  AR W  +F + FY+E+QR  +PN  
Sbjct: 121  AEAA--EGLIMLSAAKEGEIGMALIAGDLEVAETLAREWMAVFSERFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP +P P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       + VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++   L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRIMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAITEAREAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKN---DDNNN 928
                             ++ R +L+A+++ A+K AE+T +  +     LF     D++ +
Sbjct: 891  RLGPHFFDEPKAYQANIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGVFVDEDAD 950

Query: 929  LKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC- 987
            +  Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP     
Sbjct: 951  V--YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ 1008

Query: 988  TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKV 1046
            TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+V
Sbjct: 1009 TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEV 1068

Query: 1047 LEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKN 1100
              D F   +R+  +++  +  AR    +   +  +       LK   LR+      + + 
Sbjct: 1069 SNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKIHS----DALKGDQLRWLGDLFKRHRG 1124

Query: 1101 GLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
              P  + Y  + + K  ++F  N+++ P D L  AL +  G  N  ++Y
Sbjct: 1125 ACPITMEYTRDDA-KALLQFGENWRIDPADSLIQALRDQFGRDNVFLQY 1172


>gi|425897816|ref|ZP_18874407.1| DNA polymerase III, alpha subunit [Pseudomonas chlororaphis subsp.
            aureofaciens 30-84]
 gi|397891552|gb|EJL08030.1| DNA polymerase III, alpha subunit [Pseudomonas chlororaphis subsp.
            aureofaciens 30-84]
          Length = 1174

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1191 (42%), Positives = 753/1191 (63%), Gaps = 61/1191 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++  A    PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLAGMDMPAVAVTDQNNMCSLVKFYKAAMGTG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+      SR+ LLV N  GY  L EL+S+ +I+    G+  I  EW+
Sbjct: 61   IKPICGADLWLSNKDPENPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+ +G    AE  AR W  +FPD FY+E+QR  +PN  
Sbjct: 121  AEAA--EGLIMLSAAKEGEIGIALLSGDLQEAETLAREWMAVFPDRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHAAVALADKIGAPLVATNDVRFIKREDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP +P P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  + Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTQDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQVKKNLPDVNIDFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  KTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       + VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYEGLRPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTH+ + FMAA LS  M +T+K+ +L+++ +++  L +  P++N S + F   + +DG  
Sbjct: 777  KTHHPAPFMAAVLSADMHNTDKVVVLIEE-VRSMKLRLDAPDVNSSDFKF--TVNNDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YGLGAIKG G+  +EAIV  R + G F +LFDF  R+D K IN+R +++LI SGA 
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAIVEARAEGGPFKDLFDFCSRVDLKRINKRTLDALIRSGAL 890

Query: 888  DCF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDN 926
            D                 +  R +L+++++ A+K AE+T +  +         +F  +D 
Sbjct: 891  DRLGPYFHDEIKAYQANIDRNRAVLLSALEEAVKAAEQTARTADSGHADLFGGVFVEEDA 950

Query: 927  NNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS 986
            +    Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP   
Sbjct: 951  DV---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIVDLKPARD 1007

Query: 987  C-TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044
              TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G
Sbjct: 1008 TQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEG 1067

Query: 1045 KVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KC 1098
            +V  D F   +R+  +++  +  AR    +   +      +   LK   LR+      + 
Sbjct: 1068 EVSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KVHTEALKGDQLRWLGELCKRH 1123

Query: 1099 KNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +   P  + Y   +  K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 RGACPISMEYT-KEDAKALLQFGEAWRIDPADALIQALRDQFGRDNVFLQY 1173


>gi|52841197|ref|YP_094996.1| DNA polymerase III subunit alpha [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|378776915|ref|YP_005185352.1| DNA polymerase III subunit alpha [Legionella pneumophila subsp.
            pneumophila ATCC 43290]
 gi|52628308|gb|AAU27049.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|364507729|gb|AEW51253.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp.
            pneumophila ATCC 43290]
          Length = 1148

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1162 (44%), Positives = 748/1162 (64%), Gaps = 28/1162 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL++I  +++A       A+A+TD  NLF  +K +KSA   G
Sbjct: 1    MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSAVAVTDFCNLFAAVKVFKSATEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +         L+LL ++  GY  L  L+SKAY E   +G+  ++++W+
Sbjct: 61   IKPIIGSDLPCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQPRVQLQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++  +  GLIALSG   GDIG A+    + +A   A  W  +FP+ FY+EIQR  + +  
Sbjct: 121  QE--FSQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRTGRADEL 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ I +A  + LP+VAT+ ++F+ + +F AHE R CI EG  L++ +R+++++ +Q 
Sbjct: 179  HYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQYSSQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+QNT+EI+KRCN+KLE G   LP FP P    +  +L   S+ 
Sbjct: 239  LRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTVEAYLSHLSEI 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L++D    +    R  Y KRL+ E++ I  M F+GYFLIV+DFIQWAK N +
Sbjct: 299  GLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVADFIQWAKQNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITLS A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLSKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R + EEEV++L +LA ++EGI RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  MEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
            T I+SQ+DKDD+E +GL+KFDFLGL TL+I+D  +  + K   N   +   ++++P +D 
Sbjct: 537  TQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPIDISQIPTSDD 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  STFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F     +    K I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLQVLPPSINNSMYHF-----TVSDEKTIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S IE I+ ER + G F +LF F +R+D + +NRR+I +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDIWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   ++   ++  NYV+  SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQ--NYVESKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E+  FI + +S+L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADQYRRELGDFI-VPVSQLNPSLHKKAIICAQVVAIRKIITKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD +  ++ ++  +++E+  + L    +L++ G+V  D +   +++ A ++  I  
Sbjct: 1008 IIGMDDATARIDAVVFGEIFEQYSDPLATGNMLVIEGEVAIDDYNGGVKMTANQLLSIAS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  N+  N ++L  I    K  +G   V     N   K  +     + V 
Sbjct: 1068 ARTKFARCLELRLNQN-NAAVLPSIQSLLKTYSGRCAVQLAYANGVAKANLNLGQQWCVT 1126

Query: 1128 PIDDLKLALIN-LGLYNAIIEY 1148
            P D+L   L N LG    I+ Y
Sbjct: 1127 PSDELIGLLSNLLGEEQVIMRY 1148


>gi|423118771|ref|ZP_17106455.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5246]
 gi|376400837|gb|EHT13448.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5246]
          Length = 1160

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 739/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + + L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQSELMGDEFTELTVLAANNVGYQNLTLLISRAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSGA  GD+G+++  G   + +     + + FPD +Y+E+ R  + +    
Sbjct: 122  AEHQEGLILLSGARKGDVGVSLTRGNMALVDQCLSFYQQHFPDRYYLELIRTGRADEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR +K++ +Q  +
Sbjct: 182  LHAAVQLAEERGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRKYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEDEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDPEERLKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKHGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|339998248|ref|YP_004729131.1| DNA polymerase III subunit alpha [Salmonella bongori NCTC 12419]
 gi|339511609|emb|CCC29318.1| DNA polymerase III, alpha chain [Salmonella bongori NCTC 12419]
          Length = 1160

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + ++L +L  NN GY  L  L+SKAY          I  EWL +
Sbjct: 64   PIVGADFHVRSELLADELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDREWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G N + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNNALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLESEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SIDEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|16759221|ref|NP_454838.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. CT18]
 gi|29140771|ref|NP_804113.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
 gi|213163684|ref|ZP_03349394.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E00-7866]
 gi|213425957|ref|ZP_03358707.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E02-1180]
 gi|213648459|ref|ZP_03378512.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. J185]
 gi|378958378|ref|YP_005215864.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. P-stx-12]
 gi|25288562|pir||AI0530 DNA polymerase III, alpha chain [imported] - Salmonella enterica
            subsp. enterica serovar Typhi (strain CT18)
 gi|16501512|emb|CAD08689.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhi]
 gi|29136395|gb|AAO67962.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
 gi|374352250|gb|AEZ44011.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. P-stx-12]
          Length = 1160

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|421617900|ref|ZP_16058882.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri KOS6]
 gi|409780145|gb|EKN59788.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri KOS6]
          Length = 1173

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1187 (43%), Positives = 743/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MPVSFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ N  E+   SRL LL  N+ GY  L EL+S+ + E        I  EW+
Sbjct: 61   IKPICGADIWLANCDEDGPLSRLTLLAMNSVGYRNLTELISRGWTEGQRNDLVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALSGA  G++G A+ NG   +AE+    W ++FPD FY+E+QR  + N  
Sbjct: 121  KEAA--EGLIALSGAKEGEVGHALLNGDEALAESRLAEWREVFPDRFYLEVQRTNRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FLK+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALADRTGTPLVATNDVRFLKQDDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF D+P A++NT+EIA+RCN++++ G   LP FP P+ + I+D+L   S  
Sbjct: 239  LKTPEEMAELFSDLPEALENTVEIARRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ +K  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +  +E+ R++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPINIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+ K  +  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCSNNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY S FMAA LS  M +T+K+ IL+++  ++  L I PP++N+S++ F   +  DG   
Sbjct: 777  AHYPSPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVNVSEFKF--TVNDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGA+KG G+  +EAI   R + G F +LFDF  RID K IN+R + +LI SGA D
Sbjct: 831  RIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T + ++   + LF          
Sbjct: 891  RLGPYFYEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSLDSGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTV 989
             Y N+      S K+ L  EK  LG  L+ H    YE E+R+F    + +L+P     TV
Sbjct: 951  VYANHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIIDLRPARGEQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    RG K+  I +DD S  +E  +    +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKRGDKMGFITLDDRSGRIEASLFADAFNGAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   V          LK   +R+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVAS----EALKGDRMRWLADVCGRHRGAC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y      +  ++F  ++++ P D+L  AL +  G  N  ++Y
Sbjct: 1127 PITLEYT-GADARALLQFGESWRIDPADNLIQALRDQFGRDNVFLQY 1172


>gi|345870516|ref|ZP_08822468.1| DNA polymerase III, alpha subunit [Thiorhodococcus drewsii AZ1]
 gi|343921719|gb|EGV32432.1| DNA polymerase III, alpha subunit [Thiorhodococcus drewsii AZ1]
          Length = 1191

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1186 (41%), Positives = 740/1186 (62%), Gaps = 54/1186 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HL LHSEYS++DGL+RI  + +A      PA+A+TD  N F +++FYK+A   G
Sbjct: 1    MDPSFVHLHLHSEYSLVDGLVRIKPLAKAVVAAGMPAVAVTDQGNFFSLVRFYKAAIAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI+G D+W+ +  +   P RL+LLV+++ GY  L  L+S++Y++  + G  ++  +W+
Sbjct: 61   VKPIVGADLWVRDPGDPNHPHRLVLLVQDDLGYRNLTRLISRSYVDGQHMGMPQVDPDWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             ++   +GLIALSG   GD+  A+  G ++ AE    RW K+F D +Y+E+ R  +    
Sbjct: 121  PESA--EGLIALSGGPRGDVAQALLKGADEEAERRLDRWLKVFGDRYYLELLRTGRAQEG 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I++ +++A    +P+VAT+ ++F+ +++F AHE R CI EG  L + +R + +++EQ 
Sbjct: 179  ELIEKSVDLAIRHGVPVVATNDVRFIARSDFEAHEARVCIFEGRTLDDPRRPRGYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM +LF D+P A++N++EIAKRCNL+L+ G   LP FP P+ + I+ F   +S+ 
Sbjct: 239  LRTPQEMAELFADLPEALENSVEIAKRCNLELKLGDNYLPVFPVPEGMTIDSFFAEESRK 298

Query: 301  GLKKRLLNLY-KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL+ RL   + +D   +   +  Y +RLQ E++ I++M F GYFLIV+DFIQWAK+N IP
Sbjct: 299  GLEWRLDRTFDRDAPDFAERRKVYDERLQIELDVILQMGFPGYFLIVADFIQWAKDNGIP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DP+ ++LLFERFLNP R+SMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYALKITDLDPIEHDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V  +YG++AVSQI+TFGTMAAK  +RDVGRV+   Y F D I+K++PF+ G  +TL  A+
Sbjct: 419  VARKYGREAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDKIAKMVPFELG--MTLDKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            +E   L      +EEVR LI++A ++EG+ RN G HAGGV+IAP+ L +F PLY + G  
Sbjct: 477  QESDDLKRAYDTDEEVRVLIDMALKLEGLTRNAGKHAGGVVIAPTLLTDFAPLYCEPGGD 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT-----NFSLNKLPLN 594
             +++QYDKDD+E++GL+KFDFLGL TL+I+D   + +K IN            +N +  +
Sbjct: 537  NLVTQYDKDDVEQVGLVKFDFLGLRTLTIID---WALKTINEGRALKGEDPLDINLIDPH 593

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D D + LLK+  T AVFQLES+GMK ++K+ +PD F +I AL++L+RPGP+   ++ +F 
Sbjct: 594  DGDAFALLKRCETTAVFQLESRGMKELIKKLQPDSFGDITALVALFRPGPLQSGMVDDFI 653

Query: 653  RRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
             RKHG     YP P  + +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK 
Sbjct: 654  DRKHGRADVAYPHPDLEPILKPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKQ 713

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
            SEM + R  F  G+ K G+    A  IF+ ++KFAGYGFNKSH+ AYAL+SY T +LK H
Sbjct: 714  SEMDKQRAIFMEGSGKRGVEPETATYIFDLMDKFAGYGFNKSHSAAYALVSYQTLWLKAH 773

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + FMAA LS  MD+T+K+  L+ D  +   L + PP IN S Y F     +    + +
Sbjct: 774  YPAAFMAAVLSADMDNTDKVVTLI-DECRAMKLEVEPPEINRSSYQF-----TIADERTV 827

Query: 832  RYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
             YG+GAIKG G+S IE++V  R+ G  F +L+DF  RID   +NRR++ +L+ +GA D  
Sbjct: 828  IYGMGAIKGVGESAIESMVVARESGGPFRDLWDFCSRIDLHKVNRRVLEALVRAGALDKL 887

Query: 891  NEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNL----KEYLNYVKVPSWSKK 944
               R  L+A + +ALK AE+    +    + LF   +  +      + ++ V +  W  +
Sbjct: 888  GPNRATLMAHLPLALKAAEQHNASQAAGLVDLFGALEPTSAPQPDPQLVSDVHL-DWEDE 946

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT------------YSCTVSGI 992
            Q L  EK  LG  L+ H    YETE+R      +++L  T               TV G+
Sbjct: 947  QRLQGEKDTLGLYLTGHPIDRYETELRSMGGARIAKLLETDREQGRRDRRDREKRTVVGL 1006

Query: 993  ITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
            +  ++   T RG++  +V+DD +  +E  + ++LY++ + +L  +++L ++G +  D F 
Sbjct: 1007 VMGVRHGKTQRGRMGSVVLDDRTGRIEATVFSELYDQVRQLLVADQILSITGSLNFDEFR 1066

Query: 1053 KNIRINAEKIFDINVARILYGKKFSVMFNRT---------FNISILKKILLRFKCKNGLP 1103
                + A+ +     AR       ++  + +           ++ L++ L  F+  + LP
Sbjct: 1067 DAWSLRADSVRTFEEARETMADHLALTLDLSKPADHAQGAARVAALRETLNAFRDGD-LP 1125

Query: 1104 FVLYYCINKSIKYEMKFPLNYKVQPIDD-LKLALINLGLYNAIIEY 1148
              L Y +      ++ F   ++V+P D  LK   + LG    ++ Y
Sbjct: 1126 VRLRY-LRPGAMGDLVFSDTWRVRPTDALLKQLRVLLGADQVVVSY 1170


>gi|322831603|ref|YP_004211630.1| DNA polymerase III subunit alpha [Rahnella sp. Y9602]
 gi|384256717|ref|YP_005400651.1| DNA polymerase III subunit alpha [Rahnella aquatilis HX2]
 gi|321166804|gb|ADW72503.1| DNA polymerase III, alpha subunit [Rahnella sp. Y9602]
 gi|380752693|gb|AFE57084.1| DNA polymerase III subunit alpha [Rahnella aquatilis HX2]
          Length = 1160

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1158 (43%), Positives = 742/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL ++  +++ AA+   PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D+ + +EI   + ++L +L  NN GY  L  L+S+AY          + +EWL  
Sbjct: 64   PIIGADLNVQSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGYGAAGPIVDLEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA +GD+G  +  G +         + + FPD +Y+E+ R  +      
Sbjct: 122  AELNEGLILLSGARMGDVGKFLTRGNDLQVSQCLDFYQQYFPDRYYLELIRTGRAEEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+  T+F AHE+R  I +G  L + KR + +T +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDPKRPRNYTSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF D+P A+QN++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEDEMCELFEDLPEALQNSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVEKSKIGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+NS+PVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNSVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+Q+EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEAPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEEGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +N+RI+  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F        +   +Y  V  W ++  L  
Sbjct: 893  PHRAALMSSLSDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYANVMPWPEQTVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQF-IPIYLSELKPTYSCTVS---GIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++     L ++ PT    ++   G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++  +  EK +++L+++ +LI +G+V  D F   +++ A  + D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTEALEKFQHLLEKDRILIATGQVSFDDFSGGLKMMARDVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   ++ +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RENARARLRFG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
             +++V P D L L L  L
Sbjct: 1132 ASWRVTPTDKLLLDLRGL 1149


>gi|283783968|ref|YP_003363833.1| DNA polymerase III subunit alpha [Citrobacter rodentium ICC168]
 gi|282947422|emb|CBG86967.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
          Length = 1160

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + ++ GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFHVQSELMGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPVIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G  +  G + + E     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRGLLRGNSALVEECVAFYEQHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSADFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIA+RCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  TEEEMCELFSDIPEALENSVEIARRCNVTVRLGEYFLPQFPT-GDMTTEDFLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVSPSDRL 1142


>gi|378698210|ref|YP_005180167.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. SL1344]
 gi|379699452|ref|YP_005241180.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. ST4/74]
 gi|422024353|ref|ZP_16370843.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm1]
 gi|422029370|ref|ZP_16375639.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm2]
 gi|427544815|ref|ZP_18926147.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm8]
 gi|427560681|ref|ZP_18930911.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm9]
 gi|427580148|ref|ZP_18935700.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm3]
 gi|427601666|ref|ZP_18940513.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm4]
 gi|427626386|ref|ZP_18945422.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm6]
 gi|427649377|ref|ZP_18950177.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm10]
 gi|427659572|ref|ZP_18955130.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm11]
 gi|427664684|ref|ZP_18959876.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm12]
 gi|301156858|emb|CBW16334.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. SL1344]
 gi|323128551|gb|ADX15981.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. ST4/74]
 gi|414024086|gb|EKT07484.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm1]
 gi|414024422|gb|EKT07801.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm8]
 gi|414025981|gb|EKT09267.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm2]
 gi|414038221|gb|EKT20942.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm9]
 gi|414039005|gb|EKT21702.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm3]
 gi|414043308|gb|EKT25817.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm4]
 gi|414052478|gb|EKT34515.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm10]
 gi|414053884|gb|EKT35852.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm6]
 gi|414058163|gb|EKT39858.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm11]
 gi|414062175|gb|EKT43516.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. STm12]
          Length = 1160

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDHL 1142


>gi|156935300|ref|YP_001439216.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ATCC BAA-894]
 gi|389842147|ref|YP_006344231.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ES15]
 gi|156533554|gb|ABU78380.1| hypothetical protein ESA_03157 [Cronobacter sakazakii ATCC BAA-894]
 gi|387852623|gb|AFK00721.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ES15]
          Length = 1160

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PA AITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +  E+     S + +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIIGADFNMQCELLGDDFSHITVLAANNTGYQNLTLLISRAYQRGYGAAGPWIDQQWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LSG   GD+G  +  G N +AE     + + FPD +Y+E+ R  +P+    
Sbjct: 124  --LGEGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ ++F++  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF D+P A++N++EIA+RCN+ +  G+  LPKFPT  ++   DFL+ KSK GL
Sbjct: 242  TEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPKFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPEI   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEIRAQKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEMGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKNNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G+I   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPNDRL 1142


>gi|421498375|ref|ZP_15945493.1| DNA polymerase III, alpha subunit [Aeromonas media WS]
 gi|407182676|gb|EKE56615.1| DNA polymerase III, alpha subunit [Aeromonas media WS]
          Length = 1159

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1098 (43%), Positives = 726/1098 (66%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL +I  ++ AAA +  PALA+TD  N+ G+++FY SA+ KGIK
Sbjct: 4    PRFVHLRVHSDFSMVDGLQKIGPIVSAAAANNMPALALTDQMNMCGLVRFYGSAHGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ ++    +  RL LL  +N+GY  +  L+S+ Y      GR  I   WL  
Sbjct: 64   PIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKGWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++  G+I L G   GD+G  +  G   + E     +   FPD +Y+E+ R  +P+    
Sbjct: 122  VEHAKGVIVLCGGREGDLGKFLLKGNRQMVEQSLAFYQTHFPDAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+  +LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVAIAAEFDLPVVATNEVVFLGADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL+ KSK GL
Sbjct: 242  SQEEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EDRLAFLFPDPEVRAAKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGSMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDSGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK ++ 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFA 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGK 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK  +
Sbjct: 659  EAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPA 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSGFEEGAVKNGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI++ R + G F +LFDF  R+D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F    ++ +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y +E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|62178801|ref|YP_215218.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. SC-B67]
 gi|375113109|ref|ZP_09758279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. SCSA50]
 gi|62126434|gb|AAX64137.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Choleraesuis str. SC-B67]
 gi|322713255|gb|EFZ04826.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. SCSA50]
          Length = 1160

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417790340|ref|ZP_12437898.1| DNA polymerase III subunit alpha [Cronobacter sakazakii E899]
 gi|449309427|ref|YP_007441783.1| DNA polymerase III subunit alpha [Cronobacter sakazakii SP291]
 gi|333955542|gb|EGL73287.1| DNA polymerase III subunit alpha [Cronobacter sakazakii E899]
 gi|449099460|gb|AGE87494.1| DNA polymerase III subunit alpha [Cronobacter sakazakii SP291]
          Length = 1160

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PA AITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +  E+     S + +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIIGADFNMQCELLGDDFSHITVLAANNTGYQNLTLLISRAYQRGYGAAGPWIDQQWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LSG   GD+G  +  G N +AE     + + FPD +Y+E+ R  +P+    
Sbjct: 124  --LGEGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ ++F++  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF D+P A++N++EIA+RCN+ +  G+  LPKFPT  ++   DFL+ KSK GL
Sbjct: 242  TEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPKFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEMGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKNNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G+I   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPNDRL 1142


>gi|317046997|ref|YP_004114645.1| DNA polymerase III subunit alpha [Pantoea sp. At-9b]
 gi|316948614|gb|ADU68089.1| DNA polymerase III, alpha subunit [Pantoea sp. At-9b]
          Length = 1160

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1154 (43%), Positives = 741/1154 (64%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +++ AA    PA+AITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLVKKAAALGMPAIAITDFTNLCGLVKFYGTAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + ++L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNVVSELMGDELTQLTVLAANNTGYQNLTLLISRAYQRGYGIAGPVIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +YQ+GLI LSG   GD+G ++  G N +       + + FPD +Y+E+ R  +P+    
Sbjct: 122  AEYQEGLILLSGGRRGDVGRSLLRGNNALVAQCLAFYQQHFPDRYYLELTRTGRPDEEGY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHSAVELAIAEGVPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KS+ GL
Sbjct: 242  SEAEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVVKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +   ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPAVRAEKRQEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L++A T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        + VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDIEWQHESLQPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  FQ GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFQEGAEKMGVNGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  +G   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYPFH--VNDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAILEARNRDGYFKELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L++S++ ALK A++  K   I Q  +F        +   +Y  V  W ++ +
Sbjct: 890  RLGPHRAALMSSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPEQIQ 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYSCTVS---GIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT    V+   G++   +   T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVTVAAGLVIAARTMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + ++
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAKL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   +++ P D L
Sbjct: 1129 RFGAAWRISPSDRL 1142


>gi|398976846|ref|ZP_10686656.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM25]
 gi|398138729|gb|EJM27743.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM25]
          Length = 1173

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A      PA+A+TD +N+  ++KFYK+    G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNTMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SRL LLV N  GY  L EL+S+ +IE    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDGPLSRLSLLVMNAQGYRNLTELISRGFIEGQRNGMIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+  G    AE  AR W  +FPD FY+E+QR  +PN  
Sbjct: 121  AEA--NEGLIMLSAAKEGEIGMAMIGGNPAEAETLAREWMAVFPDRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP +P P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPDAVENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL  RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLDDRLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV R     +   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       + VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K+AE+T +  +         LF  DD +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGGLFVEDDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y  + K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YAIHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|153952|gb|AAA27057.1| polymerase III polymerase subunit (dnaE) [Salmonella enterica subsp.
            enterica serovar Typhimurium]
          Length = 1160

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAGLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|54293935|ref|YP_126350.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens]
 gi|53753767|emb|CAH15225.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens]
          Length = 1148

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1162 (43%), Positives = 746/1162 (64%), Gaps = 28/1162 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL++I  +++A        +A+TD  NLF  +K +KSA   G
Sbjct: 1    MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +         L+LL ++  GY  L  L+SKAY E   +G+  ++++W+
Sbjct: 61   IKPIIGSDLPCHDLEAPDTIFSLVLLCQDTTGYKNLTCLVSKAYQEGQYHGQPRVQLQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  +  GLIALSG   GDIG A+    + +A   A  W  +FP+ FY+EIQR  + +  
Sbjct: 121  PE--FSQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRTGRADEL 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ I +A  + LP+VAT+ ++F+ + +F AHE R CI EG  L++ +R+++++ +Q 
Sbjct: 179  HYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQYSSQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+QNT+EI+KRCN+KLE G   LP FP P    +  +L   S+ 
Sbjct: 239  LRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTVEAYLSHLSEI 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L++D    +    R  Y KRL+ E+  I  M F+GYFLIV+DFIQWAK N +
Sbjct: 299  GLEERLKQLFRDKSEGELLAARGEYDKRLKIELAVINNMGFAGYFLIVADFIQWAKQNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITLS A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLSKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R + EEEV++L +LA ++EGI RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  MEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
            T I+SQ+DKDD+E +GL+KFDFLGL TL+I+D  +  + K   N   +   ++++P +D 
Sbjct: 537  TQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPIDISQIPTSDD 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  STFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F     +    K I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLQVLPPSINNSMYHF-----TVSDEKTIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S IE I+ ER + G F +LF F +R+D + +NRR+I +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDVWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   ++   ++  NYV+  SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQ--NYVESKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E+  FI + + +L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADQYRRELGDFI-VPVGQLNPSLHKKAIICAQVVAIRKIITKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD +  ++ ++  +++E+  + L    +L++ G+V  D +   +++ A ++  I  
Sbjct: 1008 IIGMDDATARIDAVVFGEIFEQYSDPLGTGNMLVIEGEVAIDDYNGGVKMTANQLLSIAS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  N+  N+++L  I    K  +G   V +   N   K  +     + V 
Sbjct: 1068 ARTKFARCLELRLNQN-NVAVLPSIQSLLKTYSGRCAVQFVYANGVAKANLNLGQQWCVT 1126

Query: 1128 PIDDLKLALIN-LGLYNAIIEY 1148
            P D+L   L N LG    I+ Y
Sbjct: 1127 PSDELIGLLSNLLGEEQVIMRY 1148


>gi|16763621|ref|NP_459236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. LT2]
 gi|167990118|ref|ZP_02571218.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|378443684|ref|YP_005231316.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. D23580]
 gi|378448544|ref|YP_005235903.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 14028S]
 gi|378982773|ref|YP_005245928.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. T000240]
 gi|378987636|ref|YP_005250800.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. UK-1]
 gi|20141337|sp|P14567.2|DPO3A_SALTY RecName: Full=DNA polymerase III subunit alpha
 gi|16418736|gb|AAL19195.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Typhimurium str. LT2]
 gi|205331368|gb|EDZ18132.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261245463|emb|CBG23253.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. D23580]
 gi|267991922|gb|ACY86807.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 14028S]
 gi|312911201|dbj|BAJ35175.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. T000240]
 gi|332987183|gb|AEF06166.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. UK-1]
          Length = 1160

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|407366157|ref|ZP_11112689.1| DNA polymerase III subunit alpha [Pseudomonas mandelii JR-1]
          Length = 1173

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1190 (42%), Positives = 744/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNALSRISLLVMNAVGYRNLTELISRGFIDGQRNGSVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G    AEN AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLAMLSGNPAEAENLAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKIGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A+ NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALANTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L +D  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVDQPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLNAMEGAIKAAEQTARTHDSGHVDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTKDLKGDQLRWLGELFKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKALLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|398917453|ref|ZP_10658156.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM49]
 gi|398172847|gb|EJM60699.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM49]
          Length = 1173

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1188 (42%), Positives = 745/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLVMNAEGYRNLTELISRGFIDGQRNGAIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +     GLI LS A  G+IG A+ +G    AE  AR W ++FPD FY+EIQR  +PN  
Sbjct: 121  AEANA--GLIMLSAAKEGEIGQAMLSGNPAEAETLAREWMEVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAAEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFE 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R  G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARLAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLTAMEEAIKAAEQTARTQDSGHSDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  + ++ +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFSEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +++  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLKLRVKRVMSMEDARTNLAESLRLKLHAKDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMDYT-SPDAKAMLQFGEGWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|170718818|ref|YP_001783421.1| DNA polymerase III subunit alpha [Haemophilus somnus 2336]
 gi|168826947|gb|ACA32318.1| DNA polymerase III, alpha subunit [Haemophilus somnus 2336]
          Length = 1158

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1165 (43%), Positives = 747/1165 (64%), Gaps = 37/1165 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+I+G+ ++  +I+A       A+A+TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + +++   +   L LL KNN GY  +  LLSKAY E   Y    I   WL +
Sbjct: 64   PIIGADVLVKSDLLGDELFELTLLAKNNEGYHNITLLLSKAY-ERGYYNLPYIDQSWLAE 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              + +G+I LSG   GD+G  +    +   E     + + FPD+FY+ + R  + + +  
Sbjct: 123  --HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSLSRTGRSDEDRY 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A    LP+VAT+ + FL   +F AHE+R  I +G  L + KR K ++ +Q F+
Sbjct: 181  IQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKRPKLYSSQQYFR 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A++NT+ IA+RCN+ +  G   LPKFPT  +++  DFLI KSK GL
Sbjct: 241  SEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPT-GDLSPEDFLIQKSKEGL 299

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++   ++  Y  RLQ E++ I KM F GYFLIV +FIQW+K+N IPVGP
Sbjct: 300  EERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVMEFIQWSKDNDIPVGP 359

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RDRVI++V +
Sbjct: 360  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDKRDRVIEHVAE 419

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D I+KLIP  PG  +TL+ A + E
Sbjct: 420  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPADPG--MTLTKAFEAE 477

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L+E   N+EEV+ LI++A+++EG+ RN G HAGGV+I+PS + +F PLY        +
Sbjct: 478  PRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITDFSPLYCDSEGKHPV 537

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +    +   ++ +PLND D++N
Sbjct: 538  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAVDISTIPLNDPDSFN 597

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLKKA T AVFQLES+GMK+++K+ +PD FE+IIAL++L+RPGP++  +++NF  RKHG 
Sbjct: 598  LLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGV 657

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 658  EPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPE 717

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM   R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 718  EMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 777

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI     + ++  GL+I+PP+IN  K++F     S   + +I 
Sbjct: 778  PAEFMAAVMTSEMDNTDKIVSFYDECLR-MGLTIVPPDINTGKHHF-----SVNDNGEIV 831

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I AIV+ R + G F +LFD   R+D K INRR   +LI SGAFD   
Sbjct: 832  YGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKQINRRTFENLIKSGAFDKLG 891

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ ALK +++  K   I Q+ +F    +++      Y   P WS+KQ L  
Sbjct: 892  PHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRWSEKQILDG 951

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L+EL P       TV G+I  L+   T +G +
Sbjct: 952  ERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRFAVTKKGNR 1011

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +     E+  + L+++ ++IVSG V  D F + ++++  ++  +
Sbjct: 1012 LGIATLDDRSGLLDITLFADALERFGDKLQKDTVVIVSGTVSFDDFSQGLKMSVRELMTL 1071

Query: 1066 NVARILYGKKFSVMFNR----TFNISILKKILLRFKCKNG-LPFVLYYCINKSIKYEMKF 1120
            + AR  Y K  ++  ++       I  LK I+    C  G LP  LYY  +K  +  ++F
Sbjct: 1072 DEARSRYAKNLAISLSQEQITPHFIRQLKGIIE--PCSGGSLPIHLYYQ-SKDGRALIRF 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + + V P D+L  AL+ +   NA+
Sbjct: 1129 GVQWSVYPTDELLSALVTMLGENAV 1153


>gi|167553355|ref|ZP_02347104.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
 gi|198243100|ref|YP_002214192.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Dublin str. CT_02021853]
 gi|445147726|ref|ZP_21388329.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Dublin str. SL1438]
 gi|445155657|ref|ZP_21392377.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Dublin str. HWS51]
 gi|197937616|gb|ACH74949.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. CT_02021853]
 gi|205322170|gb|EDZ10009.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
 gi|444843983|gb|ELX69229.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Dublin str. SL1438]
 gi|444848525|gb|ELX73648.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Dublin str. HWS51]
          Length = 1160

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|197265397|ref|ZP_03165471.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
 gi|197243652|gb|EDY26272.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
          Length = 1160

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNNVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPGDRL 1142


>gi|200387887|ref|ZP_03214499.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
 gi|199604985|gb|EDZ03530.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
          Length = 1160

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|334703618|ref|ZP_08519484.1| DNA polymerase III, alpha subunit [Aeromonas caviae Ae398]
          Length = 1159

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1098 (43%), Positives = 723/1098 (65%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +I  ++ AAA +  PALA+TD  N+ G+++FY SA+ KGIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKIGPIVSAAAANNMPALALTDQMNMCGLVRFYGSAHGKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D W+ ++    +  RL LL  +N+GY  +  L+S+ Y      GR  I   WL  
Sbjct: 64   PLVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++  G+I LSG   GD+G  +  G   + E+    +   FPD +Y+E+ R  +P+    
Sbjct: 122  GEHAKGVIVLSGGREGDVGKFLLKGNRQMVEHCLAFYQTHFPDAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+   LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVAIATEFELPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL+ KSK GL
Sbjct: 242  SQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK ++ 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFA 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGK 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  IEAI+  R + G F +LFDF  R+D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIEAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F    ++ +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y +E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|206579408|ref|YP_002240328.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae 342]
 gi|288937034|ref|YP_003441093.1| DNA polymerase III subunit alpha [Klebsiella variicola At-22]
 gi|290512455|ref|ZP_06551821.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
 gi|206568466|gb|ACI10242.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
 gi|288891743|gb|ADC60061.1| DNA polymerase III, alpha subunit [Klebsiella variicola At-22]
 gi|289774796|gb|EFD82798.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
          Length = 1160

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 739/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G+++  G   + E     + + FPD +++E+ R  + +    
Sbjct: 122  VEHQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIRTGRQDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|443469621|ref|ZP_21059775.1| DNA polymerase III alpha subunit [Pseudomonas pseudoalcaligenes
            KF707]
 gi|442899073|gb|ELS25604.1| DNA polymerase III alpha subunit [Pseudomonas pseudoalcaligenes
            KF707]
          Length = 1174

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1189 (42%), Positives = 744/1189 (62%), Gaps = 57/1189 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLHSEYS++DGL+RI  +++A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MTASFVHLRLHSEYSLVDGLVRIKPLVKAVAGAGMPAVAVTDQSNMCSLVKFYKAAMGGG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   +R+ LL  + +GY  L EL+S+ + E  + G   I+ +W+
Sbjct: 61   IKPICGADIWLASPFEDGPLTRMTLLAMHADGYRNLTELVSRGWSEGQSNGLVIIQRDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     DGLIALSGA  G+IG+A+ +G    AE     W  +FPD FY+E+QR  + N  
Sbjct: 121  KAAA--DGLIALSGAKEGEIGMALLSGDQAGAEALLAEWMAVFPDRFYLELQRTARVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG +L + +R + ++ +Q 
Sbjct: 179  EHVHAAVALAERTGAPLVATNDVRFIKREDFEAHETRVCIGEGRVLDDPRRPRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN+++  GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPEEMAELFADIPEALENTVEIAKRCNIEVRLGKHFLPDFPTPNGMGIDDYLRHASYE 298

Query: 301  GLKKRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            GL++RL  L      P+ Y+ ++ RY  RL+FE+ TII+M F GYFLIV+DFIQWAKNN 
Sbjct: 299  GLEERLAVLLPRETTPD-YEEQRQRYVDRLEFELGTIIQMGFPGYFLIVADFIQWAKNNG 357

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI
Sbjct: 358  VPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 417

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  
Sbjct: 418  DYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEA 475

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A  +E  L + +K +EE +++ ++A ++EGI R  G HAGGV+IAP+KL +F P+   E 
Sbjct: 476  AYNQEEALRDFLKVDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEE 535

Query: 538  MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLND 595
              G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K       ++++PL+D
Sbjct: 536  GGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEMINREQEKKGLPAVDIDRIPLDD 595

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
            K TY++L+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  
Sbjct: 596  KKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFIN 655

Query: 654  RKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIG 707
            RKHG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+G
Sbjct: 656  RKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMG 715

Query: 708  KKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAY 767
            KKK  EM + R  F  G    G+  + +  IF+ +EKFAGYGFNKSH+ AY  +SY TA+
Sbjct: 716  KKKPEEMAKQRGGFIEGCSSNGIDPNLSGNIFDLVEKFAGYGFNKSHSAAYGWVSYQTAW 775

Query: 768  LKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK 827
            LK H+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S+Y F   ++  G 
Sbjct: 776  LKAHFPAPFMAAVLTADMHNTDKVVTLIEEC-RHMKLRIVAPDVNNSEYRF--TVDDAG- 831

Query: 828  HKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
              +I YGLGAIKG G+  +EAI   R + G F +LFDF  R+D K IN+R +++LI  GA
Sbjct: 832  --QIVYGLGAIKGVGEGPVEAITECRAEGGPFKDLFDFCNRVDLKRINKRTLDALIRGGA 889

Query: 887  FD----CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNN 928
             D     F+E+           R +L+AS++ A++ AE+T +  +   + LF        
Sbjct: 890  LDRLGPFFSEEVKAYQANIDRNRAVLLASMEEAIQAAEQTARSHDSGHMDLFGGLFGEPE 949

Query: 929  LKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT 988
               Y N+      S K+ L  EK  LG  L+ H    YE EIR+F    + ELKP     
Sbjct: 950  ADMYANHRNAKELSLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIVELKPARDTQ 1009

Query: 989  -VSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKV 1046
             ++G+I  L++    +G K+  I +DD S  +E  +    +     +L+ + L++V G+V
Sbjct: 1010 IIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFADAFNAAHGLLQTDALVVVEGEV 1069

Query: 1047 LEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKN 1100
              D F   +R+ A+++  +  AR    +   +      + S L+   LR+      + + 
Sbjct: 1070 SHDDFSGGLRLRAKRVLSLEEARTGLAESLRM----KVDFSALQGDRLRWLAELCGRHRG 1125

Query: 1101 GLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
              P  L Y  N + K  ++F  ++++ P D L  AL +  G  N  + Y
Sbjct: 1126 SCPLTLDYSGNDA-KAVLQFGDDWRIAPADALIQALRDQFGRDNVFLHY 1173


>gi|168264639|ref|ZP_02686612.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|168464204|ref|ZP_02698107.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|205351568|ref|YP_002225369.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|375122345|ref|ZP_09767509.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Gallinarum str. SG9]
 gi|378954040|ref|YP_005211527.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Gallinarum/pullorum str. RKS5078]
 gi|418762703|ref|ZP_13318830.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 35185]
 gi|418768603|ref|ZP_13324651.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 35199]
 gi|418770323|ref|ZP_13326344.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21539]
 gi|418777579|ref|ZP_13333506.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 33953]
 gi|418779920|ref|ZP_13335815.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 35188]
 gi|418786573|ref|ZP_13342386.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21559]
 gi|418803966|ref|ZP_13359578.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 35202]
 gi|418870345|ref|ZP_13424766.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 4176]
 gi|419788782|ref|ZP_14314466.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. Levine 1]
 gi|419791455|ref|ZP_14317107.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. Levine 15]
 gi|445129621|ref|ZP_21380881.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 9184]
 gi|195632694|gb|EDX51148.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|205271349|emb|CAR36142.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|205346919|gb|EDZ33550.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|326626595|gb|EGE32938.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Gallinarum str. SG9]
 gi|357204651|gb|AET52697.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Gallinarum/pullorum str. RKS5078]
 gi|392616868|gb|EIW99297.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. Levine 1]
 gi|392620318|gb|EIX02687.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. Levine 15]
 gi|392731334|gb|EIZ88563.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 35199]
 gi|392736180|gb|EIZ93347.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 35185]
 gi|392736917|gb|EIZ94078.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21539]
 gi|392743507|gb|EJA00577.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 33953]
 gi|392747403|gb|EJA04401.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21559]
 gi|392751153|gb|EJA08109.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 35188]
 gi|392771968|gb|EJA28677.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 35202]
 gi|392831028|gb|EJA86663.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 4176]
 gi|444852931|gb|ELX78004.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 9184]
          Length = 1160

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI +SG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|383188853|ref|YP_005198981.1| DNA-directed DNA polymerase III PolC [Rahnella aquatilis CIP 78.65 =
            ATCC 33071]
 gi|371587111|gb|AEX50841.1| DNA-directed DNA polymerase III PolC [Rahnella aquatilis CIP 78.65 =
            ATCC 33071]
          Length = 1160

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1158 (43%), Positives = 742/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL ++  +++ AA+   PALAITD +NL G++KFY +A+  GIK
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D+ + +EI   + ++L +L  NN GY  L  L+S+AY          + +EWL  
Sbjct: 64   PIIGADLNVQSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGYGAAGPIVDLEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA +GD+G  +  G +         + + FPD +Y+E+ R  +      
Sbjct: 122  AELNEGLILLSGARMGDVGKFLTRGNDLQVSQCLDFYQQYFPDRYYLELIRTGRAEEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+  T+F AHE+R  I +G  L + KR + +T +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDPKRPRNYTSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF D+P A+QN++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEDEMCELFEDLPEALQNSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVEKSKIGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N++PVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+Q+EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEAPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEEGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +N+RI+  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S+  ALK A++  K   I Q+ +F        +   +Y  V  W ++  L  
Sbjct: 893  PHRAALMSSLSDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYANVMPWPEQTVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQF-IPIYLSELKPTYSCTVS---GIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++     L ++ PT    ++   G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++  +  EK +++L+++ +LI +G+V  D F   +++ A  I D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTEALEKFQHLLEKDRILIATGQVSFDDFSGGLKMMARDIMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   ++ +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RENARARLRFG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
             +++V P D L L L  L
Sbjct: 1132 ASWRVTPTDKLLLDLRGL 1149


>gi|398852015|ref|ZP_10608687.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM80]
 gi|398245303|gb|EJN30826.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM80]
          Length = 1173

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1190 (42%), Positives = 744/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A      PA+A+TD +N+  ++KFYK+    G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKALTAMNMPAVAVTDQNNMCSLVKFYKNTMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SRL LLV N  GY  L EL+S+ +IE    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDAPLSRLSLLVMNAKGYRNLTELISRGFIEGQRNGMIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G    AE   R W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--NEGLIMLSAAKEGEIGMALISGNPAEAEALTREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VA++ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALADKLGAPLVASNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EMI+LF DIP AI+NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMIELFSDIPDAIENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVDEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCKTNNIEADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R  G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARADGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ----CFNEK-----------RYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                 F+E+           R +L+A+++ A+K+AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHEEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y  + K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YAVHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYT-SPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|410089182|ref|ZP_11285808.1| DNA polymerase III subunit alpha [Pseudomonas viridiflava UASWS0038]
 gi|409763469|gb|EKN48429.1| DNA polymerase III subunit alpha [Pseudomonas viridiflava UASWS0038]
          Length = 1173

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 739/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    ++   SR+ LLV N  GY  L EL+S+ +IE    G+  I+ EW+
Sbjct: 61   IKPICGADLWLAGRDQDAALSRISLLVMNAQGYRNLTELISRGFIEGQRNGQIVIQREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    DGLIALS A  G+IG+A+  G    A+   R W  +FPD FYIE+QR  + N  
Sbjct: 121  AQAS--DGLIALSAAKEGEIGMALLGGNPGEADELLREWMTVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALADRHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A+ N++EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALTNSVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+  +  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R  G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITEARSKGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVHADALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   K  K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GKDAKALLQFGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|426408016|ref|YP_007028115.1| DNA polymerase III subunit alpha [Pseudomonas sp. UW4]
 gi|426266233|gb|AFY18310.1| DNA polymerase III subunit alpha [Pseudomonas sp. UW4]
          Length = 1173

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1188 (42%), Positives = 742/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +IE    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLVMNAEGYRNLTELISRGFIEGQRNGAIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +     GLI LS A  G+IG A+ +G +  AE  AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEASA--GLIMLSAAKEGEIGQAMLSGNHAEAETLAREWMDVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R  G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARLAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLTAMEEAIKAAEQTARTQDSGHSDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  + ++ +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFSEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +++  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLKLRVKRVMSMEDARTNLAESLRLKLHAKDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMDYT-SPDAKALLQFGEGWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|204926920|ref|ZP_03218122.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
 gi|204323585|gb|EDZ08780.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
          Length = 1160

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLEGDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|168235011|ref|ZP_02660069.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|194737870|ref|YP_002113254.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Schwarzengrund str. CVM19633]
 gi|416423051|ref|ZP_11690629.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315996572]
 gi|416429688|ref|ZP_11694750.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-1]
 gi|416439432|ref|ZP_11700151.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-3]
 gi|416446689|ref|ZP_11705201.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-4]
 gi|416454879|ref|ZP_11710504.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-1]
 gi|416458293|ref|ZP_11712895.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-2]
 gi|416469231|ref|ZP_11718444.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 531954]
 gi|416479075|ref|ZP_11721971.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. NC_MB110209-0054]
 gi|416495262|ref|ZP_11728444.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CASC_09SCPH15965]
 gi|416508009|ref|ZP_11735806.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. SARB31]
 gi|416512440|ref|ZP_11737764.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. ATCC BAA710]
 gi|416531139|ref|ZP_11745488.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. LQC 10]
 gi|416533182|ref|ZP_11746150.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. SARB30]
 gi|416547431|ref|ZP_11754603.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 19N]
 gi|416555600|ref|ZP_11759085.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 29N]
 gi|416561808|ref|ZP_11761738.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 42N]
 gi|416572658|ref|ZP_11767403.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 4441 H]
 gi|416578105|ref|ZP_11770325.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 81038-01]
 gi|416588195|ref|ZP_11776731.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MD_MDA09249507]
 gi|416592363|ref|ZP_11779173.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 414877]
 gi|416600563|ref|ZP_11784510.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 366867]
 gi|416608813|ref|ZP_11789545.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 413180]
 gi|416612954|ref|ZP_11791891.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 446600]
 gi|416622431|ref|ZP_11796995.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609458-1]
 gi|416633085|ref|ZP_11801723.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556150-1]
 gi|416644998|ref|ZP_11807212.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609460]
 gi|416652247|ref|ZP_11811568.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 507440-20]
 gi|416657494|ref|ZP_11813710.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556152]
 gi|416667596|ref|ZP_11818325.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB101509-0077]
 gi|416673060|ref|ZP_11820768.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB102109-0047]
 gi|416694784|ref|ZP_11827380.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB110209-0055]
 gi|416708055|ref|ZP_11832917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB111609-0052]
 gi|416710525|ref|ZP_11834630.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009083312]
 gi|416717334|ref|ZP_11839586.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009085258]
 gi|416726649|ref|ZP_11846710.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315731156]
 gi|416727921|ref|ZP_11847410.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2009159199]
 gi|416739518|ref|ZP_11853921.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008282]
 gi|416749822|ref|ZP_11859453.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008283]
 gi|416754208|ref|ZP_11861186.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008284]
 gi|416763381|ref|ZP_11867055.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008285]
 gi|416767836|ref|ZP_11870212.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008287]
 gi|418483956|ref|ZP_13052961.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 80959-06]
 gi|418491547|ref|ZP_13058063.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035278]
 gi|418495144|ref|ZP_13061589.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035318]
 gi|418501464|ref|ZP_13067853.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035320]
 gi|418504184|ref|ZP_13070543.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035321]
 gi|418508842|ref|ZP_13075144.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035327]
 gi|418510765|ref|ZP_13077042.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Pomona str. ATCC 10729]
 gi|418524279|ref|ZP_13090266.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008286]
 gi|418857360|ref|ZP_13411989.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19470]
 gi|418862094|ref|ZP_13416639.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19536]
 gi|452121462|ref|YP_007471710.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Javiana str. CFSAN001992]
 gi|194713372|gb|ACF92593.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. CVM19633]
 gi|197291671|gb|EDY31021.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|322616055|gb|EFY12972.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315996572]
 gi|322620838|gb|EFY17698.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-1]
 gi|322623811|gb|EFY20648.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-3]
 gi|322627259|gb|EFY24050.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-4]
 gi|322630566|gb|EFY27330.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-1]
 gi|322638216|gb|EFY34917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-2]
 gi|322640701|gb|EFY37352.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 531954]
 gi|322645515|gb|EFY42042.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. NC_MB110209-0054]
 gi|322657142|gb|EFY53425.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CASC_09SCPH15965]
 gi|322657512|gb|EFY53784.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 19N]
 gi|322663832|gb|EFY60032.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 81038-01]
 gi|322666665|gb|EFY62843.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MD_MDA09249507]
 gi|322672177|gb|EFY68289.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 414877]
 gi|322676512|gb|EFY72583.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 366867]
 gi|322679396|gb|EFY75441.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 413180]
 gi|322686277|gb|EFY82261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 446600]
 gi|323193457|gb|EFZ78665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609458-1]
 gi|323197521|gb|EFZ82656.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556150-1]
 gi|323201210|gb|EFZ86279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609460]
 gi|323212143|gb|EFZ96967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556152]
 gi|323216448|gb|EGA01174.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB101509-0077]
 gi|323223362|gb|EGA07697.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB102109-0047]
 gi|323225923|gb|EGA10143.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB110209-0055]
 gi|323228536|gb|EGA12665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB111609-0052]
 gi|323236851|gb|EGA20927.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009083312]
 gi|323239649|gb|EGA23696.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009085258]
 gi|323242304|gb|EGA26333.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315731156]
 gi|323249966|gb|EGA33862.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2009159199]
 gi|323252396|gb|EGA36247.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008282]
 gi|323255679|gb|EGA39432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008283]
 gi|323262884|gb|EGA46434.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008284]
 gi|323265370|gb|EGA48866.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008285]
 gi|323271843|gb|EGA55261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008287]
 gi|363549667|gb|EHL34002.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. LQC 10]
 gi|363553002|gb|EHL37279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. SARB31]
 gi|363560417|gb|EHL44564.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 29N]
 gi|363568466|gb|EHL52444.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. SARB30]
 gi|363569404|gb|EHL53358.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. ATCC BAA710]
 gi|363573210|gb|EHL57097.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 4441 H]
 gi|363573659|gb|EHL57536.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 42N]
 gi|366060185|gb|EHN24450.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035318]
 gi|366060480|gb|EHN24743.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 80959-06]
 gi|366061668|gb|EHN25913.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035278]
 gi|366066978|gb|EHN31136.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035320]
 gi|366072512|gb|EHN36604.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035321]
 gi|366079332|gb|EHN43319.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CT_02035327]
 gi|366085469|gb|EHN49352.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Pomona str. ATCC 10729]
 gi|366826851|gb|EHN53761.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 507440-20]
 gi|372207941|gb|EHP21438.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008286]
 gi|392835307|gb|EJA90905.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19470]
 gi|392836783|gb|EJA92360.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19536]
 gi|451910466|gb|AGF82272.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Javiana str. CFSAN001992]
          Length = 1160

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|420375793|ref|ZP_14875619.1| DNA polymerase III subunit alpha [Shigella flexneri 1235-66]
 gi|391309454|gb|EIQ67123.1| DNA polymerase III subunit alpha [Shigella flexneri 1235-66]
          Length = 1160

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1151 (43%), Positives = 742/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + ++L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVRNELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDCYFLELIRTGRQDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   DFL++KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|423097051|ref|ZP_17084847.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Q2-87]
 gi|397887137|gb|EJL03620.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Q2-87]
          Length = 1173

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 743/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +IE    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDAPLSRISLLAMNAVGYRNLTELISRGFIEGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG A+ +   + AE  AR W  +FPD FYIE+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGQALLSDNAEEAEVLARDWMAVFPDRFYIEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EHLHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFQDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGELFKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y +    K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEY-LRPDAKAVLQFGEGWRIDPADALIQALRDQFGKDNVFLQY 1172


>gi|253988140|ref|YP_003039496.1| dna polymerase iii alpha subunit [Photorhabdus asymbiotica]
 gi|253779590|emb|CAQ82751.1| dna polymerase iii alpha subunit [Photorhabdus asymbiotica]
          Length = 1160

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 741/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL + + +++  A    PA AITD +NL G+++FY SA+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E+   + + L +L +NN GY  L  L+S+AY +        I+ +WL  
Sbjct: 64   PIIGADFYMESELLGDEYANLTILARNNTGYHNLTLLISEAYQQGYGAAGPTIKQKWLVS 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + +     + + FPD +Y+E+ R  + +    
Sbjct: 124  RK--EGLILLSGGRMGDVGKFLLRGNRAMVDQCLEFYQEHFPDCYYLELIRTGRVDDENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  NLP+VAT+ + F+ K +F AHE+R  I +G  L++ KR K ++ +Q  +
Sbjct: 182  LHAAVALATEKNLPVVATNDVCFIDKEDFDAHEIRVAIHDGYTLADPKRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT   ++  ++LI KSK GL
Sbjct: 242  SEQEMCELFSDIPEALENSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTENYLIEKSKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  LY DPE+   ++  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLTFLYPDPEVRAEKRPEYDERLDVELRVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  IYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLEKAFVAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDPEGLNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PLND  +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKGLEPIDIAAIPLNDNKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L++A T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        + VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKLGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  L+ +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLIDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R+D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARKKDGYFRELFDLCARVDTKKLNRRVMEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S++ ALK A++  K   I Q  +F        +   +Y  V  W ++  L  
Sbjct: 893  PHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEEVERSYANVSQWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      TV G++   K+  T RG 
Sbjct: 953  ERETLGLYLTGHPITRYLKEIERYTNGLRLKDVNPTPRGQVTTVVGLVLASKVIMTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +EV++ +   E+++++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1013 RIGLCTLDDRSGRLEVMLFSDALERHRHLLEQDRILIATGQVSFDDFNGGLKMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLLDRQIDDQLLNRLRGTLEPYRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D+L
Sbjct: 1132 ATWRVTPTDNL 1142


>gi|307609756|emb|CBW99268.1| DNA polymerase III, alpha chain [Legionella pneumophila 130b]
          Length = 1148

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1162 (43%), Positives = 746/1162 (64%), Gaps = 28/1162 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL++I  +++A        +A+TD  NLF  +K +KSA   G
Sbjct: 1    MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +         L+LL ++  GY  L  L+SKAY E   +G+  ++++W+
Sbjct: 61   IKPIIGSDLPCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQPRVQLQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  +  GLIALSG   GDIG A+    + +A   A  W  +FP+ FY+EIQR  + +  
Sbjct: 121  PE--FSQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRTGRADEL 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ I +A  + LP+VAT+ ++F+ + +F AHE R CI EG  L++ +R+++++ +Q 
Sbjct: 179  HYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQYSSQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+QNT+EI+KRCN+KLE G   LP FP P    +  +L   S+ 
Sbjct: 239  LRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTVEAYLSHLSEI 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L++D    +    R  Y KRL+ E++ I  M F+GYFLIV+DFIQWAK N +
Sbjct: 299  GLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVADFIQWAKQNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITLS A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLSKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R + EEEV++L +LA ++EGI RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  MEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
            T I+SQ+DKDD+E +GL+KFDFLGL TL+I+D  +  + K   N   +   ++++P +D 
Sbjct: 537  TQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPIDISQIPTSDD 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  STFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F     +    K I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLQVLPPSINNSMYHF-----TVSDEKTIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S IE I+ ER + G F +LF F +R+D + +NRR+I +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDVWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   ++   ++  NYV+  SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQ--NYVESKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E+  FI + + +L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADQYRRELGDFI-VPVGQLNPSLHKKAIICAQVVAIRKIITKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD +  ++ ++  +++E+  + L    +L++ G+V  D +   +++ A ++  I  
Sbjct: 1008 IIGMDDATARIDAVVFGEIFEQYSDPLGTGNMLVIEGEVAIDDYNGGVKMTANQLLSIAS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  N+  N ++L  I    K  +G   V +   N   K  +     + V 
Sbjct: 1068 ARTKFARCLELRLNQN-NAAVLPSIQSLLKTYSGRCAVQFVYANGVAKANLNLGQQWCVT 1126

Query: 1128 PIDDLKLALIN-LGLYNAIIEY 1148
            P D+L   L N LG    I+ Y
Sbjct: 1127 PSDELIGLLSNLLGEEQVIMRY 1148


>gi|395648148|ref|ZP_10435998.1| DNA polymerase III subunit alpha [Pseudomonas extremaustralis 14-3
            substr. 14-3b]
          Length = 1173

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 744/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    AE  AR W ++FPD FY+E+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGIALLGGNPHEAEVLAREWMQVFPDRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFCDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNEEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTEALKGDQLRWLGELLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  N + K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYTGNDA-KAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|113460344|ref|YP_718405.1| DNA polymerase III subunit alpha [Haemophilus somnus 129PT]
 gi|112822387|gb|ABI24476.1| DNA polymerase III, alpha subunit [Haemophilus somnus 129PT]
          Length = 1158

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1164 (43%), Positives = 747/1164 (64%), Gaps = 35/1164 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+I+G+ ++  +I+A       A+A+TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + +++   +   L LL KNN GY  +  LLSKAY E   Y    I   WL +
Sbjct: 64   PIIGADVLVKSDLLGDELFELTLLAKNNEGYHNITLLLSKAY-ERGYYNLPYIDQSWLAE 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              + +G+I LSG   GD+G  +    +   E     + + FPD+FY+ + R  + + +  
Sbjct: 123  --HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSLSRTGRSDEDRY 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A    LP+VAT+ + FL   +F AHE+R  I +G  L + KR K ++ +Q F+
Sbjct: 181  IQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKRPKLYSSQQYFR 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A++NT+ IA+RCN+ +  G   LPKFPT  +++  DFLI KSK GL
Sbjct: 241  SEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPT-GDLSPEDFLIQKSKEGL 299

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++   ++  Y  RLQ E++ I KM F GYFLIV +FIQW+K+N IPVGP
Sbjct: 300  EERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVMEFIQWSKDNDIPVGP 359

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP+R+SMPDFD+DFC + RDRVI++V +
Sbjct: 360  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPDRVSMPDFDVDFCMDKRDRVIEHVAE 419

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D I+KLIP  PG  +TL+ A + E
Sbjct: 420  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPADPG--MTLTKAFEVE 477

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L+E   N+EEV+ LI++A+++EG+ RN G HAGGV+I+PS + +F PLY        +
Sbjct: 478  PRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITDFSPLYCDSEGKHPV 537

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +    +   ++ +PLND D++N
Sbjct: 538  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAVDISTIPLNDPDSFN 597

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLKKA T AVFQLES+GMK+++K+ +PD FE+IIAL++L+RPGP++  +++NF  RKHG 
Sbjct: 598  LLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGV 657

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 658  EPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPE 717

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM   R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 718  EMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 777

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI     + ++  GL+I+PP+IN  K++F     S   + +I 
Sbjct: 778  PAEFMAAVMTSEMDNTDKIVSFYDECLR-MGLTIVPPDINTGKHHF-----SVNDNGEIV 831

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I AIV+ R + G F +LFD   R+D K +NRR   +LI SGAFD   
Sbjct: 832  YGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIKSGAFDKLG 891

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ ALK +++  K   I Q+ +F    +++      Y   P WS+KQ L  
Sbjct: 892  PHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRWSEKQILDG 951

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L+EL P       TV G+I  L+   T +G +
Sbjct: 952  ERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRFAVTKKGNR 1011

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +     E+  + L+++ ++IVSG V  D F + ++++  ++  +
Sbjct: 1012 LGIATLDDRSGLLDITLFADALERFGDKLQKDTVVIVSGTVSFDDFSQGLKMSVRELMTL 1071

Query: 1066 NVARILYGKKFSVMFNR----TFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            + AR  Y K  ++  ++       I  LK I+  F     LP  LYY  +K  +  ++F 
Sbjct: 1072 DEARSRYAKNLAISLSQEQITPHFIRQLKGIIEPF-SGGSLPIHLYYQ-SKDGRALIRFG 1129

Query: 1122 LNYKVQPIDDLKLALINLGLYNAI 1145
            + + V P D+L  AL+ +   NA+
Sbjct: 1130 VQWSVYPTDELLSALVTMLGENAV 1153


>gi|168244999|ref|ZP_02669931.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
 gi|194449006|ref|YP_002044221.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. SL476]
 gi|419731695|ref|ZP_14258605.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41579]
 gi|419736000|ref|ZP_14262862.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41563]
 gi|419740007|ref|ZP_14266744.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41573]
 gi|419743746|ref|ZP_14270410.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41566]
 gi|419748603|ref|ZP_14275097.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41565]
 gi|421571407|ref|ZP_16017085.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. CFSAN00322]
 gi|421575685|ref|ZP_16021294.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. CFSAN00325]
 gi|421578298|ref|ZP_16023876.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. CFSAN00326]
 gi|421583624|ref|ZP_16029140.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. CFSAN00328]
 gi|421884717|ref|ZP_16315924.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Senftenberg str. SS209]
 gi|194407310|gb|ACF67529.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL476]
 gi|205336213|gb|EDZ22977.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
 gi|379985668|emb|CCF88197.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Senftenberg str. SS209]
 gi|381291253|gb|EIC32503.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41579]
 gi|381292746|gb|EIC33920.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41563]
 gi|381296806|gb|EIC37907.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41573]
 gi|381311583|gb|EIC52398.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41566]
 gi|381313665|gb|EIC54446.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. 41565]
 gi|402520828|gb|EJW28168.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. CFSAN00322]
 gi|402520864|gb|EJW28203.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. CFSAN00325]
 gi|402524449|gb|EJW31747.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. CFSAN00326]
 gi|402531525|gb|EJW38730.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. CFSAN00328]
          Length = 1160

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI +SG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|152968778|ref|YP_001333887.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|238893180|ref|YP_002917914.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae NTUH-K2044]
 gi|402782317|ref|YP_006637863.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae 1084]
 gi|424934982|ref|ZP_18353354.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KpQ3]
 gi|425078281|ref|ZP_18481384.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae WGLW1]
 gi|425079962|ref|ZP_18483059.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae WGLW2]
 gi|425088913|ref|ZP_18492006.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae WGLW3]
 gi|425090081|ref|ZP_18493166.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae WGLW5]
 gi|428931653|ref|ZP_19005246.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae JHCK1]
 gi|449058404|ref|ZP_21736613.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae hvKP1]
 gi|150953627|gb|ABR75657.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|238545496|dbj|BAH61847.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae NTUH-K2044]
 gi|402543179|gb|AFQ67328.1| DNA polymerase III alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae 1084]
 gi|405590142|gb|EKB63676.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae WGLW1]
 gi|405600051|gb|EKB73218.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae WGLW3]
 gi|405606887|gb|EKB79857.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae WGLW2]
 gi|405614645|gb|EKB87344.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae WGLW5]
 gi|407809169|gb|EKF80420.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KpQ3]
 gi|426307925|gb|EKV69998.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae JHCK1]
 gi|448875398|gb|EMB10417.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae hvKP1]
          Length = 1160

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 738/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G+++  G   + E     + + FPD +++E+ R  + +    
Sbjct: 122  VEHQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIRTGRQDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|398930965|ref|ZP_10664896.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM48]
 gi|398164488|gb|EJM52624.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM48]
          Length = 1173

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1188 (42%), Positives = 742/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +IE    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLVMNAEGYRNLTELISRGFIEGQRNGAIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +     GLI LS A  G+IG A+ +G    AE  AR W ++FPD FY+EIQR  +PN  
Sbjct: 121  AEANA--GLIMLSAAKEGEIGQAMLSGNPAEAETLAREWMEVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R  G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARLAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLTAMEEAIKAAEQTARTQDSGHSDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  + ++ +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFSEAFHAAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +++  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLKLRVKRVMSMEDARTNLAESLRLKLHAKDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMDYT-SPDAKALLQFGEGWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|77457343|ref|YP_346848.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf0-1]
 gi|77381346|gb|ABA72859.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens Pf0-1]
          Length = 1173

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1190 (42%), Positives = 740/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A      PA+A+TD +N+  ++KFYK+    G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNTMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+  G    AE  AR W  +FPD FY+E+QR  +PN  
Sbjct: 121  AEA--NEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P AI+NT+EIAKRCN+ ++ GK  LP +P P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV R     +   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       + VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K+AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y  + K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YAVHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|398943021|ref|ZP_10670659.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM41(2012)]
 gi|398159952|gb|EJM48238.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM41(2012)]
          Length = 1173

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 742/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNALSRISLLAMNAVGYRNLTELISRGFIDGQRNGSVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G    AEN AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLAMLSGNPAEAENLAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKIGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ RL + L +D  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEDRLSVLLPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVDEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCKTNNIEADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQEGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLNAMEGAIKAAEQTARTHDSGHVDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGELFKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKALLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|168230540|ref|ZP_02655598.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
 gi|194468770|ref|ZP_03074754.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|194455134|gb|EDX43973.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|205335161|gb|EDZ21925.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
          Length = 1160

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI +SG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGAALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|194445238|ref|YP_002039471.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. SL254]
 gi|418787280|ref|ZP_13343083.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19447]
 gi|418792842|ref|ZP_13348582.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19449]
 gi|418798614|ref|ZP_13354289.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19567]
 gi|418805927|ref|ZP_13361505.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21550]
 gi|418810288|ref|ZP_13365829.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 22513]
 gi|418816286|ref|ZP_13371778.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21538]
 gi|418820994|ref|ZP_13376425.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 22425]
 gi|418826122|ref|ZP_13381370.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 22462]
 gi|418829536|ref|ZP_13384509.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM N18486]
 gi|418835438|ref|ZP_13390331.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM N1543]
 gi|418842921|ref|ZP_13397730.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21554]
 gi|418849204|ref|ZP_13403937.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 37978]
 gi|418854680|ref|ZP_13409347.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19593]
 gi|194403901|gb|ACF64123.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL254]
 gi|392766424|gb|EJA23202.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19567]
 gi|392766460|gb|EJA23237.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19447]
 gi|392766795|gb|EJA23568.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19449]
 gi|392782399|gb|EJA39036.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 22513]
 gi|392784154|gb|EJA40763.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21550]
 gi|392789647|gb|EJA46149.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21538]
 gi|392791732|gb|EJA48201.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 22425]
 gi|392803462|gb|EJA59655.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM N1543]
 gi|392803818|gb|EJA60001.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM N18486]
 gi|392806634|gb|EJA62732.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 21554]
 gi|392809146|gb|EJA65186.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 22462]
 gi|392821688|gb|EJA77511.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 37978]
 gi|392823845|gb|EJA79637.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19593]
          Length = 1160

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|345876952|ref|ZP_08828712.1| ribonuclease HII [endosymbiont of Riftia pachyptila (vent Ph05)]
 gi|344226060|gb|EGV52403.1| ribonuclease HII [endosymbiont of Riftia pachyptila (vent Ph05)]
          Length = 1208

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1107 (44%), Positives = 706/1107 (63%), Gaps = 40/1107 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P FIHLR+HSEYS++DG++RI  ++  A     PA+A+TD SNLF +IKFY++A   G
Sbjct: 35   MQPNFIHLRVHSEYSLVDGMVRIKPLVAKAVELGMPAVALTDQSNLFALIKFYQAALGGG 94

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ N  +  KP RLLLLV+N  GY  L  L+S++Y E  + GR  +   WL
Sbjct: 95   IKPIAGTDLWLRNPDDVNKPFRLLLLVQNLEGYRNLTRLVSRSYREGQHLGRPMLDRAWL 154

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E +   DGLIALS    GD+G A+  G    AE     W ++F D FY+E+ R  +P+  
Sbjct: 155  EGSV--DGLIALSAGRDGDVGRALLAGNQAAAERLLAGWLELFGDRFYLELNRTGRPDEE 212

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+  ++P+VAT+ ++FL   +F AHEVR CI +G  L +++R + ++++Q 
Sbjct: 213  AYLHAAVALAAARDVPVVATNDVRFLASEDFEAHEVRVCIHDGRTLEDSRRPRLYSEQQY 272

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +TQ EM +LF DIP A+ N++EIAKRC+L L  GK  LP FP P+ + I  F   +S+ 
Sbjct: 273  LRTQQEMCELFADIPEALANSVEIAKRCSLALTLGKHFLPDFPIPEGMTIEQFFSEESRK 332

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ RL  L+ D       ++R  Y +RLQ E++ I +M F GYFLIV+DFIQWAK+N+I
Sbjct: 333  GLEWRLEQLF-DTSSADFAEIRKPYDERLQIELDVINQMGFPGYFLIVADFIQWAKDNAI 391

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DP+ + LLFERFLNP R+SMPDFDIDFC + RD VI 
Sbjct: 392  PVGPGRGSGAGSLVAYVLKITDLDPIEHELLFERFLNPERVSMPDFDIDFCMDRRDEVID 451

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV  +YG+D+VSQI+T+G+MAAK  +RDVGRVL   Y F D ++K+IPF+ G  +TL  A
Sbjct: 452  YVARKYGRDSVSQIITYGSMAAKAVVRDVGRVLGHPYGFTDRVAKMIPFELG--MTLEKA 509

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            ++E   LA+  + +EEV +LI++A+++EG+ RN G HAGGV+IAP  L +F PLY +EG 
Sbjct: 510  LEESEDLADAYRTDEEVGELIKMARKLEGLARNAGKHAGGVVIAPGLLTDFAPLYCEEGG 569

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDK 596
              +++Q+DK+D+E+ GL+KFDFLGL TL+I+D  +  +     K       ++ + + D 
Sbjct: 570  GNLVTQFDKNDVEQAGLVKFDFLGLRTLTIIDWALQTVNAGRAKQGLEPIDISAIDMADP 629

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ +LK+  T AVFQLES+GMK ++K+ +PD F++I AL++L+RPGP+   ++ NF  R
Sbjct: 630  ATFKMLKRCETTAVFQLESRGMKELIKKLQPDSFDDITALVALFRPGPLQSGMVDNFINR 689

Query: 655  KHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GK
Sbjct: 690  KHGREAISYPDAQYQHGSLKPILDATYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGK 749

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +L
Sbjct: 750  KKPEEMAKQRAVFKEGAENNGIDAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTMWL 809

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA  S  MD+T+K+  L+ D  +   L + PP +NLS+Y F     +    
Sbjct: 810  KAHYPAAFMAAVCSADMDNTDKVVPLI-DESRRMQLKVEPPQVNLSQYKF-----TIADE 863

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
            K + YGLGAIKG G+S IE+IV ER   G F +LF F +RID K +NRR++ SLI +GA 
Sbjct: 864  KTVIYGLGAIKGVGESAIESIVLERDANGPFADLFSFCRRIDMKRVNRRVLESLIRAGAL 923

Query: 888  DCFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVK--VPSWSK 943
            D   E R  ++  + +ALK AE+  +   + Q  LF   ++         V   V  W  
Sbjct: 924  DGLGENRATMMLHLPLALKMAEQQHEAQEVGQDDLFGMGESAQGGAEPAVVPEGVEEWDD 983

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK------------PTYSCTVSG 991
            +Q L  EK+ LG  L+ H    YE + +Q     ++EL                   V G
Sbjct: 984  EQRLQGEKETLGLYLTGHPIDRYEQDRKQLASSRIAELSVENNGGGGGGRRRGVPVVVVG 1043

Query: 992  IITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            ++     + T RG++  +++DD S  +EV + N+ YE ++++L  + LL+VSG +  D +
Sbjct: 1044 LVVSASHRQTQRGRMGTLLLDDKSGRIEVTLFNEAYEAHRDLLVSDNLLVVSGSLSYDEY 1103

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSV 1078
               + + A+ +  +  AR LY     +
Sbjct: 1104 RGGLSVRADNLLTVEQARGLYASHLDL 1130


>gi|365142839|ref|ZP_09347878.1| DNA polymerase III subunit alpha [Klebsiella sp. 4_1_44FAA]
 gi|363651133|gb|EHL90214.1| DNA polymerase III subunit alpha [Klebsiella sp. 4_1_44FAA]
          Length = 1160

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G+++  G   + E     + + FPD +++E+ R  + +    
Sbjct: 122  VEHQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIRTGRQDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPAVRAERRPEYDQRLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|421143773|ref|ZP_15603705.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens BBc6R8]
 gi|404505034|gb|EKA19072.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens BBc6R8]
          Length = 1173

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 745/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    AE  AR W ++FP+ FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGIALLGGNPHEAEVLAREWMEVFPNRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EQLHAAVALAEKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDESKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTDALKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  N + K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYTGNDA-KAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|229588818|ref|YP_002870937.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens SBW25]
 gi|229360684|emb|CAY47542.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens SBW25]
          Length = 1173

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1190 (42%), Positives = 745/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    AE  AR W ++FPD FY+EIQR  +PN  
Sbjct: 121  AEA--NEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y  ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YGNHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTEALKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  N + K  ++F  ++++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYTGNDA-KAMLQFGESWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|418843551|ref|ZP_13398347.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19443]
 gi|392816307|gb|EJA72235.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. CVM 19443]
          Length = 1160

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|197251652|ref|YP_002145236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SL483]
 gi|440762711|ref|ZP_20941763.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SH11G1113]
 gi|440767245|ref|ZP_20946228.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SH08SF124]
 gi|440772190|ref|ZP_20951097.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SH10GFN094]
 gi|197215355|gb|ACH52752.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Agona str. SL483]
 gi|436419407|gb|ELP17283.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SH10GFN094]
 gi|436420897|gb|ELP18751.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SH08SF124]
 gi|436422434|gb|ELP20271.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SH11G1113]
          Length = 1160

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FP+ +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPERYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|329893785|ref|ZP_08269873.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
 gi|328923508|gb|EGG30822.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
          Length = 1160

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1157 (42%), Positives = 724/1157 (62%), Gaps = 33/1157 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+EYS+IDG++RI  ++   A    PA+A+TD  N FG++K YK+A   G+KPI
Sbjct: 4    FVHLRLHTEYSLIDGIVRIKPLMSKVAELGMPAVAVTDFCNFFGLVKAYKAALGAGVKPI 63

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D  I+   E  +   L LLV +  GY  L  L+SKAY E    G   I  EWL   +
Sbjct: 64   FGADFLISGLAETDRALPLTLLVTSLEGYANLTRLISKAYQEGQRLGVPYIEYEWL--TE 121

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
            +Q GLIALSG   G +G  +   + D+A   A +W  +FP  FYIEIQR  + N    I 
Sbjct: 122  FQGGLIALSGGREGQLGQLLLANKQDLALEHASQWMALFPGRFYIEIQRTGRDNEEPYIH 181

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
            + + +AS +  PIVAT+ ++FL+  EF AHE R CI EG  L + +R + +T +Q  ++ 
Sbjct: 182  EAVKLASALQCPIVATNDVRFLQADEFEAHEARVCIGEGRTLDDPRRPRNYTDQQYLRSP 241

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P A+ NT+EIAKRCNL L  G P LP++P P+ + ++ +    S  GL +
Sbjct: 242  QEMAELFQDLPEALANTVEIAKRCNLILNLGTPYLPEYPVPEGMTMDQYFRQLSHEGLAQ 301

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            R+    +     +     Y  RL  E++ II+M F GYFLIV DFI+WAK + IPVGPGR
Sbjct: 302  RIGGQGERIPDPRFSHQDYIDRLNIELDIIIQMGFPGYFLIVMDFIRWAKEHDIPVGPGR 361

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD VI YV   Y
Sbjct: 362  GSGAGSLVAYVLLITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDYVATHY 421

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SKLIPF+ G  +TL+ A+++E  
Sbjct: 422  GRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVG--MTLAKAVEQEEA 479

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
            L + ++++ + +++ ++A Q+EGI RNVG HAGGV+IAPSKL++F PLY  E   G+++Q
Sbjct: 480  LRDFLRDDSQAQEIWDMACQLEGITRNVGKHAGGVVIAPSKLVDFSPLYCDETGGGLVTQ 539

Query: 545  YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYNLL 602
            YDK+D+E+ GL+KFDFLGL TL+I+   I  I  +++        +N++PL+D   + LL
Sbjct: 540  YDKNDVEDAGLVKFDFLGLRTLTIIAWAIKMINPRRVAHGEQALDINQIPLDDNAVFQLL 599

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EY 659
            ++A+T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E 
Sbjct: 600  QQADTTAVFQLESRGMKDLIKRLRPDNFEDIIALVALFRPGPLQSGMVDNFINRKHGREA 659

Query: 660  FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
              YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM
Sbjct: 660  IAYPDAHYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM 719

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
             + R+ FQ+GA + G+    A  IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK HY +
Sbjct: 720  AKQREVFQSGAAERGIDPELAIRIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKVHYPA 779

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA +S  + +T+KI I +++  +  GL +  P++N  +Y F     +     +I YG
Sbjct: 780  EFMAAVMSSELQNTDKIVIFIEEC-RAMGLPLKLPDVNEGRYAF-----TVNDLGEIVYG 833

Query: 835  LGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGAIKG G+  +EAI+ ER   G F +LFDF  R D++ +N+R I +L+ +GAFD  +E 
Sbjct: 834  LGAIKGLGEGPVEAILRERDANGPFRDLFDFCARTDRRLLNKRAIEALVRAGAFDSLSEP 893

Query: 894  RYMLVASIDVAL----KNAEKTKKFINQL--SLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
            R++L+A++D A+    + A  T   I+ L   +  +  + +   Y  +     WS ++ L
Sbjct: 894  RWVLMAAVDDAVKAAEQKASNTASGIDDLFGEVMPSAPSADGNVYAAFRSARPWSGRERL 953

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT--YSCTVSGIITELKLKTTYRGK 1005
              EK  LG  ++ H    YE EIRQF+P  +++L+     S  + G+I  ++   T RG 
Sbjct: 954  SGEKDTLGLYVTGHPIDDYEREIRQFVPTKIADLRADGKSSQRIVGLIVAVRTMKTKRGD 1013

Query: 1006 ILIIV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
             + IV +DD S  +E  +  + ++ ++  L ++ L+++ G V  D +   + + A +I  
Sbjct: 1014 TMAIVTLDDRSARIEATVYAEAFQASREALTKDTLIVMEGGVAHDDYSGGLSMRANRILS 1073

Query: 1065 INVARILYGKKFSVMFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            ++ AR  Y  +  +  N   ++ ++ ++  +L        P V+ Y  + +    +    
Sbjct: 1074 LDEARGAYASELRITLNGKSDLVLVAQLAQVLNPSVGGACPVVIDYQRHDASSV-IVLGE 1132

Query: 1123 NYKVQPIDDLKLALINL 1139
             Y++ P D+L  AL  L
Sbjct: 1133 AYRIHPSDELLAALGQL 1149


>gi|398957185|ref|ZP_10677135.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM33]
 gi|398148632|gb|EJM37302.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM33]
          Length = 1173

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1188 (42%), Positives = 741/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +IE    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLVMNAEGYRNLTELISRGFIEGQRNGAIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +     GLI LS A  G+IG A+ +G    AE  AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEASA--GLIMLSAAKEGEIGQAMLSGNPAEAETLAREWMDVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R  G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARLAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLTAMEEAIKAAEQTARTQDSGHSDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  + ++ +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFSEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +++  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLKLRVKRVMSMEDARTNLAESLRLKLHAKDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMDYT-SPDAKALLQFGEGWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|388470890|ref|ZP_10145099.1| DNA polymerase III, alpha subunit [Pseudomonas synxantha BG33R]
 gi|388007587|gb|EIK68853.1| DNA polymerase III, alpha subunit [Pseudomonas synxantha BG33R]
          Length = 1173

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1190 (42%), Positives = 742/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    AE  AR W ++FPD FY+E+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYLEVQRTSRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSADEMAQLFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTEALKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y      K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYT-GSDAKAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|395794790|ref|ZP_10474107.1| DNA polymerase III subunit alpha [Pseudomonas sp. Ag1]
 gi|395341059|gb|EJF72883.1| DNA polymerase III subunit alpha [Pseudomonas sp. Ag1]
          Length = 1173

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 745/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    AE  AR W ++FP+ FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGIALLGGNPHEAEVLAREWMEVFPNRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EQLHAAVALAEKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTDALKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  N + K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYTGNDA-KAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|110834019|ref|YP_692878.1| DNA polymerase III subunit alpha [Alcanivorax borkumensis SK2]
 gi|110647130|emb|CAL16606.1| DNA polymerase III, alpha subunit [Alcanivorax borkumensis SK2]
          Length = 1166

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1109 (44%), Positives = 721/1109 (65%), Gaps = 49/1109 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLH++YS++DG++R+ ++ +   N+  PA+A+TD SNLF +IKFY++A N GIK
Sbjct: 4    PRFVHLRLHTDYSLVDGIVRVKELTKTCVNEQIPAVAVTDDSNLFALIKFYQNAMNAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D+W+       +P+ L  LV N  GY  L  L+S+A+  N + GRA ++ EWL  
Sbjct: 64   PLMGADLWVQG-THIDEPAYLSFLVLNEVGYQNLTLLISRAWQTNQDRGRALVKPEWL-- 120

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LS A  G++G  +  G+++ A+ +AR     + D FY+E+QR  +P     
Sbjct: 121  AELNEGLIVLSAASQGEVGQLLLAGKHEQAQQYARWLVSTYGDRFYLEVQRTSRPGDEDC 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A  + LP+VAT+ ++FL++ +F AHE R CI +G  L + +R KK+++EQ  K
Sbjct: 181  LHASVALAEQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRRPKKYSEEQYLK 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF D+P A++NT+EIA+RC L +  G+  LP FP P+ + I  +    S  GL
Sbjct: 241  SADEMAQLFSDLPEALENTVEIARRCTLDIRLGENFLPDFPIPEGMTIEQYFEKVSHDGL 300

Query: 303  KKRLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            ++RL  L    DPE Y  ++  Y  RL+FE++ I +M F GYFLIV+DFIQWAK+N +PV
Sbjct: 301  EERLKVLLDSDDPE-YALKRKDYDDRLRFELDIINQMGFPGYFLIVADFIQWAKDNEVPV 359

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E RDRVI YV
Sbjct: 360  GPGRGSGAGSLVAYALKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDRVINYV 419

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D+YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP  PG  +TLS A++
Sbjct: 420  ADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGVPG--MTLSKALE 477

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
            +E  L E ++++     E   +++E+A ++EG+ RNVG HAGGV+IAP KL +F PLY +
Sbjct: 478  QEETLREFLESDENSDKEAANEIMEMAFKLEGLTRNVGKHAGGVVIAPGKLTDFAPLYCE 537

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL---- 591
            E  T +++QYDKDD+E  GL+KFDFLGL TL+I+D   + +K  N K     L+ L    
Sbjct: 538  EDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIID---WAVKAANVKRAREGLDDLVIDH 594

Query: 592  -PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LI 648
             PL+D  +++LLK+ +T AVFQLESQGMK ++K+ KPD FE+IIAL++LYRPGP++  ++
Sbjct: 595  IPLDDSPSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRPGPLESGMV 654

Query: 649  KNFCRRKHG-EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLL 702
             NF  RKHG E   YPDP+ +      +L  +YG+++YQEQVMQIAQ L GY+LG AD+L
Sbjct: 655  DNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGYTLGGADML 714

Query: 703  RRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLS 762
            RRA+GKKK  EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL++
Sbjct: 715  RRAMGKKKPEEMEKQRAIFEEGAKGKGVDAGLAMKIFDLVEKFAGYGFNKSHSAAYALVA 774

Query: 763  YYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPII 822
            Y TA+LK HY + FMAA +S  M +T+K+   + D  KT GL +LPP++N   Y F    
Sbjct: 775  YQTAWLKVHYPAEFMAATISADMQNTDKVVTFI-DECKTMGLQVLPPDVNSCGYRFTVNP 833

Query: 823  ESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSL 881
            E D     I YGLGAIKG G+  IEAIVT R + G F +LFDF +RID K INRR + ++
Sbjct: 834  EGD-----IVYGLGAIKGLGEGPIEAIVTARAEGGEFKDLFDFCRRIDLKKINRRSLEAM 888

Query: 882  INSGAFDCFN-----EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLN 934
            + +G  D          R  L+A++  A+  A++  +      + +F   D++     + 
Sbjct: 889  VRAGVLDKLGLNSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAMDDSPATA-VE 947

Query: 935  YVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSG 991
            +    SW+ +  L  E+  LG  L+ H    YE E++QF+   ++ L+PT    + TV+G
Sbjct: 948  WKPARSWNDETRLNGERDTLGLFLTGHPIDQYEKEVQQFVTARINALQPTAKGEAATVAG 1007

Query: 992  IITELKLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049
            ++  L++  + R   ++  I +DD +  VEV +  + + +   +++++ LLI  G V  D
Sbjct: 1008 LVVALRITRSKRSGERMAFITLDDKTGRVEVSVFGKTFAEYGELVQKDTLLIFKGGVRND 1067

Query: 1050 RFLKNIRINAEKIFDINVARILYGKKFSV 1078
             +  +  + A++I D+  AR  + ++  V
Sbjct: 1068 EYTGSFNLVADEIMDMRQAREAFARRLRV 1096


>gi|392977688|ref|YP_006476276.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp.
            dissolvens SDM]
 gi|392323621|gb|AFM58574.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp.
            dissolvens SDM]
          Length = 1160

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 738/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + +++ +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFHVQSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ +SG  +GD+G  +  G + + +     + + FPD +Y+E+ R  +P+    
Sbjct: 122  AELNEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT   +   DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GEMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCLPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYIKEIERYVGGYRLKDMHPTERGKITTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|378977090|ref|YP_005225231.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae HS11286]
 gi|419975526|ref|ZP_14490935.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH1]
 gi|419981426|ref|ZP_14496702.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH2]
 gi|419986671|ref|ZP_14501801.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH4]
 gi|419992348|ref|ZP_14507305.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH5]
 gi|419998616|ref|ZP_14513401.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH6]
 gi|420004504|ref|ZP_14519140.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH7]
 gi|420010305|ref|ZP_14524780.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH8]
 gi|420016382|ref|ZP_14530674.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH9]
 gi|420021823|ref|ZP_14535999.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH10]
 gi|420027343|ref|ZP_14541337.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH11]
 gi|420033265|ref|ZP_14547072.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH12]
 gi|420044853|ref|ZP_14558329.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH16]
 gi|420050725|ref|ZP_14564021.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH17]
 gi|420056012|ref|ZP_14569173.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH18]
 gi|420060993|ref|ZP_14573987.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH19]
 gi|420067703|ref|ZP_14580493.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH20]
 gi|420072921|ref|ZP_14585554.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH21]
 gi|420078740|ref|ZP_14591194.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH22]
 gi|420085646|ref|ZP_14597862.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH23]
 gi|421913590|ref|ZP_16343267.1| DNA polymerase III alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae ST258-K26BO]
 gi|421919209|ref|ZP_16348715.1| DNA polymerase III alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae ST258-K28BO]
 gi|428148717|ref|ZP_18996570.1| DNA polymerase III alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae ST512-K30BO]
 gi|364516501|gb|AEW59629.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae HS11286]
 gi|397342747|gb|EJJ35903.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH1]
 gi|397343260|gb|EJJ36409.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH2]
 gi|397347355|gb|EJJ40463.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH4]
 gi|397359857|gb|EJJ52544.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH6]
 gi|397361273|gb|EJJ53938.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH5]
 gi|397365499|gb|EJJ58122.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH7]
 gi|397374963|gb|EJJ67271.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH9]
 gi|397379070|gb|EJJ71270.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH8]
 gi|397386408|gb|EJJ78491.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH10]
 gi|397393641|gb|EJJ85394.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH11]
 gi|397395605|gb|EJJ87310.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH12]
 gi|397410562|gb|EJK01839.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH17]
 gi|397411070|gb|EJK02335.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH16]
 gi|397421028|gb|EJK12064.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH18]
 gi|397427750|gb|EJK18512.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH20]
 gi|397432094|gb|EJK22759.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH19]
 gi|397438590|gb|EJK29082.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH21]
 gi|397444448|gb|EJK34723.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH22]
 gi|397448980|gb|EJK39134.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH23]
 gi|410112535|emb|CCM85892.1| DNA polymerase III alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae ST258-K26BO]
 gi|410118501|emb|CCM91340.1| DNA polymerase III alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae ST258-K28BO]
 gi|427541358|emb|CCM92708.1| DNA polymerase III alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae ST512-K30BO]
          Length = 1160

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1154 (43%), Positives = 740/1154 (64%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+S+AY     YG       W+++
Sbjct: 64   PIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISRAY--QRGYGALG---PWIDR 118

Query: 123  N---KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            N   ++Q+GLI LSG   GD+G+++  G   + E     + + FPD +++E+ R  + + 
Sbjct: 119  NWLVEHQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIRTGRQDE 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q
Sbjct: 179  EAYLHAAVALAEARGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              +++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK
Sbjct: 239  YMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSK 297

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ DPE     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +P
Sbjct: 298  EGLEERLAFLFPDPEERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 418  VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAF 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EPQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E   
Sbjct: 476  EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGL 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKD 597
              ++Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK 
Sbjct: 536  HPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  +
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   ++V P D L
Sbjct: 1129 RFGATWRVSPSDRL 1142


>gi|386033259|ref|YP_005953172.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae KCTC 2242]
 gi|424829060|ref|ZP_18253788.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae Ecl8]
 gi|339760387|gb|AEJ96607.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae KCTC 2242]
 gi|414706477|emb|CCN28181.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae subsp.
            pneumoniae Ecl8]
          Length = 1160

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 738/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G+++  G   + E     + + FPD +++E+ R  + +    
Sbjct: 122  VEHQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIRTGRQDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|117618855|ref|YP_855729.1| DNA polymerase III subunit alpha [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117560262|gb|ABK37210.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1159

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1098 (43%), Positives = 723/1098 (65%), Gaps = 32/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +IN ++ AAA +  PALA+TD  N+ G+++FY +A+ KG+K
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ ++    +  RL LL  +N+GY  +  L+S+ Y      GR  I   WL  
Sbjct: 64   PIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++  G+I LSG   GD+G  +  G   + E     +   FPD +Y+E+ R  +P+    
Sbjct: 122  AEHAKGVIVLSGGREGDVGKFLLKGNRQMTEQCLAFYQTHFPDAYYLELLRTGRPDEEVY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + IA+   LP+VAT+ + FL   +F AHE+R  I +G  L + +R ++++ +Q  +
Sbjct: 182  LHMAVAIATEFALPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++NT+EIAKRCN+ +  G+  LP FPT  ++   DFL+ KSK GL
Sbjct: 242  SQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFG+MAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG++RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +P++DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKRSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGK 658

Query: 658  EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD + +      +L  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D  +  GL+++PP++N  +Y F   +  DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVTLV-DECQRMGLTVIPPDVNTGRYRF--SVNEDG---HIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  I+AI+  R + G F +LFDF  R+D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIDAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+A+++ A++ AE+  K   + Q+ +F    ++ +++K+   +  VP W  K  L
Sbjct: 893  PHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKK--AFANVPHWPDKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+R++    L +L PT   TV+   G++   +   T RG
Sbjct: 951  EGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             K+ I  +DD S  ++V + ++  EK + +++++ +L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 NKMGIFTLDDRSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELL 1070

Query: 1064 DINVARILYGKKFSVMFN 1081
            DIN AR  + +   +  +
Sbjct: 1071 DINDARERFARAIRISLD 1088


>gi|148360386|ref|YP_001251593.1| DNA polymerase III subunit alpha [Legionella pneumophila str. Corby]
 gi|148282159|gb|ABQ56247.1| DNA polymerase III, alpha subunit [Legionella pneumophila str. Corby]
          Length = 1148

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1162 (44%), Positives = 745/1162 (64%), Gaps = 28/1162 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL++I  +++A        +A+TD  NLF  +K +KSA   G
Sbjct: 1    MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +         L+LL ++  GY  L  L+SKAY E   +G+  ++++W+
Sbjct: 61   IKPIIGSDLPCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQPRVQLQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  +  GLIALSG   GDIG A+    + +A   A  W  +FP+ FY+EIQR  + +  
Sbjct: 121  PE--FSRGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRTGRADEL 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ I +A  + LP+VAT+ ++F+ + +F AHE R CI EG  L++ +R++ ++ +Q 
Sbjct: 179  HYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQHYSSQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+QNT+EI+KRCN+KLE G   LP FP P    +  +L   S+ 
Sbjct: 239  LRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTVEAYLSHLSEV 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L++D    +    R  Y KRL+ E++ I  M F+GYFLIV+DFIQWAK N +
Sbjct: 299  GLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVADFIQWAKQNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITLS A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLSKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R + EEEV++L +LA ++EGI RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  MEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
            T I+SQ+DKDD+E +GL+KFDFLGL TL+I+D  +  + K   N   +   ++++P +D 
Sbjct: 537  TQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPIDISQIPTSDD 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  STFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F     +    K I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLQVLPPSINNSMYHF-----TVSDEKTIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S IE I+ ER + G F +LF F +R+D + +NRR+I +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDVWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   ++   ++  NYV+  SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQ--NYVESKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E+  FI + +S+L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADQYRRELGDFI-VPVSQLNPSLHKKAIICAQVVAIRKIITKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD +  ++ ++  +++E+  + L    +L++ G+V  D +   +++ A ++  I  
Sbjct: 1008 IIGMDDATARIDAVVFGEIFEQYSDPLATGNMLVIEGEVAIDDYNGGVKMTANQLLSIAS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  N+  N ++L  I    K  +G   V     N   K  +     + V 
Sbjct: 1068 ARTKFARCLELRLNQN-NAAVLPSIQSLLKTYSGRCAVQLAYANGVAKANLNLGQQWCVT 1126

Query: 1128 PIDDLKLALIN-LGLYNAIIEY 1148
            P D+L   L N LG    I+ Y
Sbjct: 1127 PSDELIGLLSNLLGEEQVIMRY 1148


>gi|398892811|ref|ZP_10645766.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM55]
 gi|398184912|gb|EJM72338.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM55]
          Length = 1173

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1188 (42%), Positives = 742/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLVMNAEGYRNLTELISRGFIDGQRNGAIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +     GLI LS A  G+IG A+ +G    AE  AR W ++FPD FY+EIQR  +PN  
Sbjct: 121  AEANA--GLIMLSAAKEGEIGQAMLSGNPAEAETLAREWMEVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFE 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R  G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARLAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLTAMEEAIKAAEQTARTQDSGHSDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  + ++ +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFSEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +++  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLKLRVKRVMSMEDARTNLAESLRLKLHAKDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMDYT-SPDAKALLQFGEGWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|359780494|ref|ZP_09283720.1| DNA polymerase III subunit alpha [Pseudomonas psychrotolerans L19]
 gi|359371806|gb|EHK72371.1| DNA polymerase III subunit alpha [Pseudomonas psychrotolerans L19]
          Length = 1173

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1167 (42%), Positives = 734/1167 (62%), Gaps = 47/1167 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DG++R+  +++AA     PA+A+TD  NL  ++KFYK+A   G
Sbjct: 1    MSASFVHLRLHTEYSLVDGIVRVKGLVKAAEAAGMPAVAVTDQGNLCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+     +   SR+ LLV N  GY  L ELLS+ + E    G+  I+ +W+
Sbjct: 61   IKPIAGADIWLAGREGDAPLSRMTLLVMNAKGYRNLTELLSRGFQEGQQDGQIVIQRDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +GLIALSG+  G+IG+A+  G   +A+     W ++F D FY+E+QR ++    
Sbjct: 121  KDAS--EGLIALSGSKEGEIGLALLEGDLALADQLFEEWQQVFQDRFYLEVQRTERVGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A      +VAT+ ++FLK  +F AHE R CI EG  L + +R +K++ +Q 
Sbjct: 179  EHLHAAVALADRCGGALVATNDVRFLKAEDFEAHETRVCIGEGRPLDDPRRERKYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FP P  + IND+L   S  
Sbjct: 239  LKSAAEMAELFSDLPEALENTVEIAKRCNIEIQLGKYFLPNFPIPNGMTINDYLRHVSFE 298

Query: 301  GLKKRLLNLYKDPEI--YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L+       Y+ ++  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +
Sbjct: 299  GLEERLAVLWPRETTPNYEEKRQEYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVADLYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLQKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +  +E+ +++ ++A ++EGI R  G HAGGV+IAP+KL +F P+   E  
Sbjct: 477  FEQEEPLRDFLATDEDAKEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEDG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E+ GL+KFDFLGL TL+I+   +  I +   +     LN   +PL+DK
Sbjct: 537  NGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINRTEVEEGREPLNIDFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYALLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       + VL+ TYGI++YQEQVMQIAQ++GGY+LGQAD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMGGYTLGQADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCANNGIDAELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+ IL+++  +   L I  P++N+S++ F     +DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVILIEEC-RHMKLRIDTPDVNISEFKF---TVNDG-- 830

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAIV  R  G F +LFDF  R+D K IN+R + +LI SGA D
Sbjct: 831  GRIVYGLGAIKGVGEGPVEAIVEARAEGPFKDLFDFCARVDLKRINKRTLEALIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             ++ R +L+A+++ A+ +AE+T +  N   + LF          
Sbjct: 891  RLGPHYHDELKAYQATIDQNRAVLLAAMEEAIASAEQTARSHNSGHVDLFGGVFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ +    + K+ L  EK+ LG  L+ H    YE E+R+     + +LKP+    TV
Sbjct: 951  VYANHRRARELNLKERLRGEKETLGLYLTGHPIEEYEGEVRRLARQRIVDLKPSRETQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    RG K+  + +DD S  +E  +  + +   + +L+ + L+IV G+V +
Sbjct: 1011 AGLIVNLRVMKNKRGDKMGFVTLDDRSGRIEASLFAEAFNAAQALLQTDALVIVEGEVSQ 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC---KNGLPFV 1105
            D F   +R+ A+++  +  AR    +   +   R+  ++  +   L   C   +   P  
Sbjct: 1071 DDFSGGLRLRAKRMLGLEEARTALAESLRIAV-RSEALAGDRLRWLGELCGRHRGACPVT 1129

Query: 1106 LYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + Y    + +  ++F  NY++ P D L
Sbjct: 1130 IDYQ-GPTARALLQFGENYRIDPADGL 1155


>gi|238911297|ref|ZP_04655134.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Tennessee str. CDC07-0191]
          Length = 1160

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI +SG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|336248826|ref|YP_004592536.1| DNA polymerase III subunit alpha [Enterobacter aerogenes KCTC 2190]
 gi|334734882|gb|AEG97257.1| DNA polymerase III subunit alpha [Enterobacter aerogenes KCTC 2190]
          Length = 1160

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G+++  G   + E     + + FPD +Y+E+ R  + +    
Sbjct: 122  VEHQEGLILLSGGRKGDVGVSLIRGNMPLVEQCLAFYQQHFPDRYYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVQLAEEHGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEERAKRRPEYDQRLDVELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|345865264|ref|ZP_08817452.1| DNA polymerase III subunit alpha [endosymbiont of Tevnia jerichonana
            (vent Tica)]
 gi|345123593|gb|EGW53485.1| DNA polymerase III subunit alpha [endosymbiont of Tevnia jerichonana
            (vent Tica)]
          Length = 1174

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1107 (44%), Positives = 707/1107 (63%), Gaps = 40/1107 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P FIHLR+HSEYS++DG++RI  ++  A     PA+A+TD SNLF +IKFY++A   G
Sbjct: 1    MQPNFIHLRVHSEYSLVDGMVRIKPLVAKAVELGMPAVALTDQSNLFALIKFYQAALGGG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ N  +  KP RLLLLV+N  GY  L  L+S++Y E  + GR  +   WL
Sbjct: 61   IKPIAGTDLWLRNPDDVNKPFRLLLLVQNLEGYRNLTRLVSRSYREGQHLGRPMLDRAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E +   DGLIALS    GD+G A+  G    AE     W ++F D FY+E+ R  +P+  
Sbjct: 121  EGSV--DGLIALSAGRDGDVGRALLAGNQAAAERLLAGWLELFGDRFYLELNRTGRPDEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+  ++P+VAT+ ++FL   +F AHEVR CI +G  L +++R + ++++Q 
Sbjct: 179  AYLHAAVALAAARDVPVVATNDVRFLASEDFEAHEVRVCIHDGRTLEDSRRPRLYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +TQ EM +LF DIP A+ N++EIAKRC+L L  GK  LP FP P+ + I  F   +S+ 
Sbjct: 239  LRTQQEMCELFADIPEALANSVEIAKRCSLALTLGKHFLPDFPIPEGMTIEQFFSEESRK 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ RL  L+ D       ++R  Y +RLQ E++ I +M F GYFLIV+DFIQWAK+N+I
Sbjct: 299  GLEWRLEQLF-DTSSADFAEIRKPYDERLQIELDVINQMGFPGYFLIVADFIQWAKDNAI 357

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DP+ + LLFERFLNP R+SMPDFDIDFC + RD VI 
Sbjct: 358  PVGPGRGSGAGSLVAYVLKITDLDPIEHELLFERFLNPERVSMPDFDIDFCMDRRDEVID 417

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV  +YG+D+VSQI+T+G+MAAK  +RDVGRVL   Y F D ++K+IPF+ G  +TL  A
Sbjct: 418  YVARKYGRDSVSQIITYGSMAAKAVVRDVGRVLGHPYGFTDRVAKMIPFELG--MTLEKA 475

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            ++E   LA+  + +EEV +LI++A+++EG+ RN G HAGGV+IAP  L +F PLY +EG 
Sbjct: 476  LEESEDLADAYRTDEEVGELIKMARKLEGLARNAGKHAGGVVIAPGLLTDFAPLYCEEGG 535

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDK 596
              +++Q+DK+D+E+ GL+KFDFLGL TL+I+D  +  +     K       ++ + + D 
Sbjct: 536  GNLVTQFDKNDVEQAGLVKFDFLGLRTLTIIDWALQTVNAGRAKQGLEPIDISAIDMADP 595

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ +LK+  T AVFQLES+GMK ++K+ +PD F++I AL++L+RPGP+   ++ NF  R
Sbjct: 596  ATFKMLKRCETTAVFQLESRGMKELIKKLQPDSFDDITALVALFRPGPLQSGMVDNFINR 655

Query: 655  KHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GK
Sbjct: 656  KHGREAISYPDAQYQHGSLKPILDATYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGK 715

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +L
Sbjct: 716  KKPEEMAKQRAVFKEGAENNGIDAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTMWL 775

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA  S  MD+T+K+  L+ D  +   L + PP +NLS+Y F     +    
Sbjct: 776  KAHYPAAFMAAVCSADMDNTDKVVPLI-DESRRMQLKVEPPQVNLSQYKF-----TIADE 829

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
            K + YGLGAIKG G+S IE+IV ER   G F +LF F +RID K +NRR++ SLI +GA 
Sbjct: 830  KTVIYGLGAIKGVGESAIESIVLERDANGPFADLFSFCRRIDMKRVNRRVLESLIRAGAL 889

Query: 888  DCFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVK--VPSWSK 943
            D   E R  ++  + +ALK AE+  +   + Q  LF   ++         V   V  W  
Sbjct: 890  DGLGENRATMMLHLPLALKMAEQQHEAQEVGQDDLFGMGESAQGGAEPAVVPEGVEEWDD 949

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK------------PTYSCTVSG 991
            +Q L  EK+ LG  L+ H    YE + +Q     ++EL                   V G
Sbjct: 950  EQRLQGEKETLGLYLTGHPIDRYEQDRKQLASSRIAELSVENNGGGGGGRRRGVPVVVVG 1009

Query: 992  IITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            ++  +  + T RG++  +++DD S  +EV + N+ YE ++++L  + LL+VSG +  D +
Sbjct: 1010 LVVSVSHRQTQRGRMGTLLLDDKSGRIEVTLFNEAYEAHRDLLVSDNLLVVSGSLSYDEY 1069

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSV 1078
               + + A+ +  +  AR LY     +
Sbjct: 1070 RGGLSVRADNLLTVEQARGLYASHLDL 1096


>gi|168823099|ref|ZP_02835099.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|409248657|ref|YP_006884498.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Weltevreden str. 2007-60-3289-1]
 gi|205340602|gb|EDZ27366.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|320084485|emb|CBY94278.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Weltevreden str. 2007-60-3289-1]
          Length = 1160

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI +SG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|312959407|ref|ZP_07773924.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6]
 gi|311286124|gb|EFQ64688.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6]
          Length = 1173

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1190 (42%), Positives = 744/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNALSRISLLAMNGVGYRNLTELISRGFIDGQRNGSVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+  G    AE  A+ W ++FPD FY+E+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEAPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTEALKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  N + K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYTGNDA-KAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|296101353|ref|YP_003611499.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ATCC 13047]
 gi|295055812|gb|ADF60550.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ATCC 13047]
          Length = 1160

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 738/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + +++ +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFHVQSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ +SG  +GD+G  +  G + + +     + + FPD +Y+E+ R  +P+    
Sbjct: 122  AELNEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT   +   DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GEMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCLPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYIKEIERYVGGYRLKDMHPTERGKITTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|399006232|ref|ZP_10708760.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM17]
 gi|398122691|gb|EJM12277.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM17]
          Length = 1174

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1191 (42%), Positives = 750/1191 (62%), Gaps = 61/1191 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++  A    PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLAGMGMPAVAVTDQNNMCSLVKFYKAAMGTG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+      SR+ LLV N  GY  L EL+S+ +I+    G+  I  EW+
Sbjct: 61   IKPICGADLWLSNKDPENPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    A+  AR W  +FPD FY+E+QR  +PN  
Sbjct: 121  AEAA--EGLIMLSAAKEGEIGIALLAGDLQEAQTLAREWMAVFPDRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHAAVALADKIGAPLVATNDVRFIKREDFEAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN++++ GK  LP +P P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE+  II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELNIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQVKKNLPDVNIDFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  KTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       + VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYEGLRPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCANNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTH+ + FMAA LS  M +T+K+ +L+++ +++  L +  P++N S + F   + +DG  
Sbjct: 777  KTHHPAPFMAAVLSADMHNTDKVVVLIEE-VRSMKLRLDAPDVNSSDFKF--TVNNDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YGLGAIKG G+  +EAIV  R + G F +LFDF  R+D K IN+R +++LI SGA 
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAIVEARAEGGPFKDLFDFCSRVDLKRINKRTLDALIRSGAL 890

Query: 888  DCF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDN 926
            D                 +  R +L+++++ A+K AE+T +  +         +F  +D 
Sbjct: 891  DRLGPYFHDEIKAYQANIDRNRAVLLSALEEAVKAAEQTARTADSGHADLFGGVFVEEDA 950

Query: 927  NNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS 986
            +    Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP   
Sbjct: 951  DV---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIVDLKPARD 1007

Query: 987  C-TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044
              TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G
Sbjct: 1008 TQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEG 1067

Query: 1045 KVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KC 1098
            +V  D F   +R+  +++  +  AR    +   +      +   LK   LR+      + 
Sbjct: 1068 EVSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KVHTEALKGDQLRWLGELCKRH 1123

Query: 1099 KNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +   P  + Y   +  K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 RGACPISMEYT-KEDAKALLQFGEAWRIDPADALIQALRDQFGRDNVFLQY 1173


>gi|296106547|ref|YP_003618247.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99
            Alcoy]
 gi|295648448|gb|ADG24295.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99
            Alcoy]
          Length = 1148

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1162 (43%), Positives = 746/1162 (64%), Gaps = 28/1162 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL++I  +++A        +A+TD  NLF  +K +KSA   G
Sbjct: 1    MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +         L+LL ++  GY  L  L+SKAY E   +G+  ++++W+
Sbjct: 61   IKPIIGSDLPCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQPRVQLQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  +  GLIALSG   GDIG A+    + +A   A  W  +FP+ FY+EIQR  + +  
Sbjct: 121  PE--FSQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRTGRADEL 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ + +A  + LP+VAT+ ++F+ + +F AHE R CI EG  L++ +R+++++ +Q 
Sbjct: 179  HYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQYSSQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+QNT+EI+KRCN+KL+ G   LP FP P    +  +L   S+ 
Sbjct: 239  LRSADEMELLFSDLPSALQNTVEISKRCNVKLDLGHNYLPNFPIPDGTTVEAYLSHLSEV 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L++D    +    R  Y KRL+ E++ I  M F+GYFLIV+DFIQWAK N +
Sbjct: 299  GLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVADFIQWAKQNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITLS A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLSKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R + EEEV++L +LA ++EGI RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  MEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
            T I+SQ+DKDD+E +GL+KFDFLGL TL+I+D  +  + K   N   +   ++++P +D 
Sbjct: 537  TQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPIDISQIPTSDD 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  STFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F     +    K I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLQVLPPSINNSMYHF-----TVSDEKTIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S IE I+ ER + G F +LF F +R+D + +NRR+I +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDVWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   ++   ++  NYV+  SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQ--NYVESKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E+  FI + +S+L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADQYRRELGDFI-VPVSQLNPSLHKKAIICAQVVAIRKIITKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD +  ++ ++  +++E+  + L    +L++ G+V  D +   +++ A ++  I  
Sbjct: 1008 IIGMDDATARIDAVVFGEIFEQYSDPLATGNMLVIEGEVAIDDYNGGVKMTANQLLSIAS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  N+  N ++L  I    K  +G   V     N   K  +     + V 
Sbjct: 1068 ARTKFARCLELRLNQN-NAAVLPSIQSLLKTYSGRCAVQLAYANGVAKANLNLGQQWCVT 1126

Query: 1128 PIDDLKLALIN-LGLYNAIIEY 1148
            P D+L   L N LG    I+ Y
Sbjct: 1127 PSDELIGLLSNLLGEEQVIMRY 1148


>gi|422007792|ref|ZP_16354778.1| DNA polymerase III subunit alpha [Providencia rettgeri Dmel1]
 gi|414097682|gb|EKT59337.1| DNA polymerase III subunit alpha [Providencia rettgeri Dmel1]
          Length = 1160

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1151 (43%), Positives = 748/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++  A+   PA AITD +NL G+++FY +A+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKVASMGMPAFAITDFTNLCGLVRFYGAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E+   + S L +L +NN GY  L  L+S+AY +        I+ EWL K
Sbjct: 64   PIIGADFYVESELLGDEISHLTVLARNNEGYQNLTLLISEAYQKGYGAVGPTIKREWLAK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  DGLI LSG   GD+G  +  G   + +     +   FPD +Y+E+ R  +P+    
Sbjct: 124  HK--DGLILLSGGRKGDVGQCLLRGNQALVDECLAFYETHFPDCYYLELVRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ + F++ ++F AHE+R  I +G  L++ KR K ++ +Q  +
Sbjct: 182  LHAAVELATKKGLPVVATNDVCFIESSDFDAHEIRVAIHDGFTLADPKRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ +SK GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPT-GDMKTEDFLVMRSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEKVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+D+ +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPIDIAAIPLHDQKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKVLPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAIV  R + G F  +FD   R+D K INRR++  LI +GAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIVEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S++ ALK A++  K   I Q  +F        +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMSSLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVESSYASVPKWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y +EI ++   + L ++ PT      TV G++   K+ TT RG 
Sbjct: 953  ERETLGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +++++ +   +K +++L+++ +LI +G+V  D F    ++   ++ D
Sbjct: 1013 RIGICTLDDRSGRLDIMLFSDALDKYQHMLEKDNILIATGQVSFDDFNGGNKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + ++  N  +L ++   L       +P  LYY  + + + ++KF 
Sbjct: 1073 ISEAREKYARGLAISLSDKQINDQLLNRLRSTLEPHRSGTIPVHLYYQKDDA-RAKLKFG 1131

Query: 1122 LNYKVQPIDDL 1132
            + ++V P+D L
Sbjct: 1132 VVWRVTPVDPL 1142


>gi|262044745|ref|ZP_06017792.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
            ATCC 13884]
 gi|259037895|gb|EEW39119.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
            ATCC 13884]
          Length = 1160

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 738/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHVAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G+++  G   + E     + + FPD +++E+ R  + +    
Sbjct: 122  VEHQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIRTGRQDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|207855749|ref|YP_002242400.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
 gi|421356728|ref|ZP_15807048.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 622731-39]
 gi|421366226|ref|ZP_15816431.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 640631]
 gi|421371144|ref|ZP_15821304.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 77-0424]
 gi|421374748|ref|ZP_15824869.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 607307-6]
 gi|421381954|ref|ZP_15832007.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 485549-17]
 gi|421386209|ref|ZP_15836223.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 596866-22]
 gi|421390944|ref|ZP_15840917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 596866-70]
 gi|421394378|ref|ZP_15844318.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 629164-26]
 gi|421399266|ref|ZP_15849162.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 629164-37]
 gi|421403462|ref|ZP_15853307.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 639672-46]
 gi|421406697|ref|ZP_15856509.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 639672-50]
 gi|421413743|ref|ZP_15863493.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 77-1427]
 gi|421417256|ref|ZP_15866967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 77-2659]
 gi|421422914|ref|ZP_15872578.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 78-1757]
 gi|421426222|ref|ZP_15875851.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 22510-1]
 gi|421431674|ref|ZP_15881256.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 8b-1]
 gi|421433570|ref|ZP_15883128.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648905 5-18]
 gi|421439707|ref|ZP_15889188.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648901 6-18]
 gi|421443024|ref|ZP_15892467.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 50-3079]
 gi|421448859|ref|ZP_15898244.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 58-6482]
 gi|436616667|ref|ZP_20514342.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 22704]
 gi|436795917|ref|ZP_20522635.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CHS44]
 gi|436806736|ref|ZP_20526891.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1882]
 gi|436812933|ref|ZP_20531265.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1884]
 gi|436831098|ref|ZP_20535808.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1594]
 gi|436852388|ref|ZP_20542709.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1566]
 gi|436855680|ref|ZP_20544838.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1580]
 gi|436866179|ref|ZP_20551955.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1543]
 gi|436870850|ref|ZP_20554485.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1441]
 gi|436877133|ref|ZP_20558300.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1810]
 gi|436887338|ref|ZP_20563675.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1558]
 gi|436895300|ref|ZP_20568363.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1018]
 gi|436902255|ref|ZP_20573084.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1010]
 gi|436909143|ref|ZP_20576031.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1729]
 gi|436916934|ref|ZP_20580593.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_0895]
 gi|436924092|ref|ZP_20585240.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_0899]
 gi|436933463|ref|ZP_20589670.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1457]
 gi|436940176|ref|ZP_20594184.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1747]
 gi|436952618|ref|ZP_20601190.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_0968]
 gi|436958861|ref|ZP_20603396.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1444]
 gi|436972313|ref|ZP_20610315.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1445]
 gi|436978680|ref|ZP_20612683.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1559]
 gi|436988486|ref|ZP_20616236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1565]
 gi|437003349|ref|ZP_20621529.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1808]
 gi|437023159|ref|ZP_20628907.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1811]
 gi|437036701|ref|ZP_20633980.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_0956]
 gi|437039975|ref|ZP_20634420.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1455]
 gi|437048546|ref|ZP_20639560.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1575]
 gi|437059996|ref|ZP_20646159.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1725]
 gi|437073116|ref|ZP_20652926.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1791]
 gi|437080753|ref|ZP_20657293.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1795]
 gi|437093736|ref|ZP_20664053.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 576709]
 gi|437113193|ref|ZP_20668669.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 635290-58]
 gi|437130348|ref|ZP_20676517.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 607308-19]
 gi|437138420|ref|ZP_20680944.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 607307-2]
 gi|437143112|ref|ZP_20684124.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 607308-9]
 gi|437152967|ref|ZP_20690219.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 629163]
 gi|437159542|ref|ZP_20694034.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SE15-1]
 gi|437171240|ref|ZP_20700535.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_N202]
 gi|437175111|ref|ZP_20702612.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_56-3991]
 gi|437186977|ref|ZP_20709864.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_76-3618]
 gi|437260532|ref|ZP_20717653.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_81-2490]
 gi|437265651|ref|ZP_20720529.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SL909]
 gi|437274317|ref|ZP_20725291.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SL913]
 gi|437286819|ref|ZP_20730321.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_69-4941]
 gi|437317120|ref|ZP_20738058.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 638970-15]
 gi|437322764|ref|ZP_20738981.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 17927]
 gi|437335617|ref|ZP_20742781.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CHS4]
 gi|437421191|ref|ZP_20754852.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 543463 22-17]
 gi|437459117|ref|ZP_20760969.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 561362 1-1]
 gi|437474025|ref|ZP_20766044.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 642044 4-1]
 gi|437544425|ref|ZP_20782931.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648899 3-17]
 gi|437554104|ref|ZP_20784321.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648900 1-16]
 gi|437576534|ref|ZP_20790703.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648901 1-17]
 gi|437596744|ref|ZP_20796359.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648901 39-2]
 gi|437615758|ref|ZP_20802336.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648903 1-6]
 gi|437646917|ref|ZP_20809171.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648904 3-6]
 gi|437659399|ref|ZP_20812226.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 653049 13-19]
 gi|437674350|ref|ZP_20816503.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 642044 8-1]
 gi|437717374|ref|ZP_20828361.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 543463 42-20]
 gi|437728723|ref|ZP_20830603.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648901 16-16]
 gi|437750562|ref|ZP_20833848.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 76-2651]
 gi|437807386|ref|ZP_20839763.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 33944]
 gi|437853454|ref|ZP_20847503.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 6.0562-1]
 gi|438085634|ref|ZP_20858742.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 81-2625]
 gi|438098865|ref|ZP_20862987.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 62-1976]
 gi|438115719|ref|ZP_20870592.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 53-407]
 gi|445170238|ref|ZP_21395637.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SE8a]
 gi|445193572|ref|ZP_21400183.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 20037]
 gi|445235782|ref|ZP_21406923.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SE10]
 gi|445248364|ref|ZP_21408568.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 436]
 gi|445333194|ref|ZP_21414697.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 18569]
 gi|445352672|ref|ZP_21420679.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 13-1]
 gi|445361482|ref|ZP_21423826.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. PT23]
 gi|206707552|emb|CAR31826.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
 gi|395991054|gb|EJI00180.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 640631]
 gi|395993647|gb|EJI02741.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 622731-39]
 gi|395999695|gb|EJI08712.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 485549-17]
 gi|396004915|gb|EJI13896.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 77-0424]
 gi|396007005|gb|EJI15964.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 607307-6]
 gi|396012947|gb|EJI21837.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 596866-70]
 gi|396013115|gb|EJI22003.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 596866-22]
 gi|396014828|gb|EJI23712.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 629164-26]
 gi|396028249|gb|EJI37010.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 639672-46]
 gi|396028612|gb|EJI37372.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 629164-37]
 gi|396032866|gb|EJI41582.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 639672-50]
 gi|396038172|gb|EJI46812.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 77-1427]
 gi|396038590|gb|EJI47225.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 78-1757]
 gi|396043141|gb|EJI51755.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 77-2659]
 gi|396052533|gb|EJI61040.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 8b-1]
 gi|396055318|gb|EJI63809.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 22510-1]
 gi|396061497|gb|EJI69919.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648905 5-18]
 gi|396068953|gb|EJI77297.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648901 6-18]
 gi|396071090|gb|EJI79416.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 58-6482]
 gi|396071758|gb|EJI80081.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 50-3079]
 gi|434961941|gb|ELL55181.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CHS44]
 gi|434966390|gb|ELL59236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 22704]
 gi|434969261|gb|ELL61975.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1882]
 gi|434975923|gb|ELL68197.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1884]
 gi|434982728|gb|ELL74538.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1594]
 gi|434985069|gb|ELL76769.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1566]
 gi|434992434|gb|ELL83891.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1580]
 gi|434994500|gb|ELL85850.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1543]
 gi|435001624|gb|ELL92716.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1441]
 gi|435009171|gb|ELL99967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1810]
 gi|435010399|gb|ELM01164.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1558]
 gi|435017416|gb|ELM07923.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1018]
 gi|435020042|gb|ELM10470.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1010]
 gi|435029983|gb|ELM20032.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1729]
 gi|435032716|gb|ELM22647.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_0895]
 gi|435040971|gb|ELM30723.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_0899]
 gi|435042247|gb|ELM31967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1457]
 gi|435046150|gb|ELM35767.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1747]
 gi|435049323|gb|ELM38850.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_0968]
 gi|435055697|gb|ELM45108.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1444]
 gi|435055895|gb|ELM45305.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1445]
 gi|435069586|gb|ELM58586.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1559]
 gi|435072416|gb|ELM61340.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1565]
 gi|435073006|gb|ELM61895.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1808]
 gi|435073372|gb|ELM62245.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_0956]
 gi|435075500|gb|ELM64315.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1811]
 gi|435087601|gb|ELM76088.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1455]
 gi|435091893|gb|ELM80266.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1725]
 gi|435098399|gb|ELM86640.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1575]
 gi|435109170|gb|ELM97125.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1791]
 gi|435111471|gb|ELM99375.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 576709]
 gi|435112083|gb|ELM99959.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CDC_2010K_1795]
 gi|435116756|gb|ELN04484.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 635290-58]
 gi|435125503|gb|ELN12944.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 607308-19]
 gi|435132872|gb|ELN20055.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 607307-2]
 gi|435141631|gb|ELN28572.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 607308-9]
 gi|435141989|gb|ELN28919.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 629163]
 gi|435146884|gb|ELN33666.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_N202]
 gi|435149607|gb|ELN36302.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SE15-1]
 gi|435157351|gb|ELN43812.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_56-3991]
 gi|435157852|gb|ELN44286.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_76-3618]
 gi|435163936|gb|ELN50049.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_81-2490]
 gi|435176322|gb|ELN61711.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SL913]
 gi|435177420|gb|ELN62745.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SL909]
 gi|435179576|gb|ELN64724.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 638970-15]
 gi|435184118|gb|ELN69063.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CVM_69-4941]
 gi|435195511|gb|ELN79903.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 17927]
 gi|435197986|gb|ELN82224.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. CHS4]
 gi|435200847|gb|ELN84813.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 543463 22-17]
 gi|435222366|gb|ELO04474.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 561362 1-1]
 gi|435224512|gb|ELO06473.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 642044 4-1]
 gi|435234237|gb|ELO15116.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648899 3-17]
 gi|435243882|gb|ELO24138.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648901 1-17]
 gi|435244285|gb|ELO24516.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648900 1-16]
 gi|435249307|gb|ELO29132.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648901 39-2]
 gi|435262134|gb|ELO41263.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648903 1-6]
 gi|435269939|gb|ELO48449.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 653049 13-19]
 gi|435271228|gb|ELO49696.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648904 3-6]
 gi|435278734|gb|ELO56564.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 642044 8-1]
 gi|435284392|gb|ELO61888.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 543463 42-20]
 gi|435290412|gb|ELO67340.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 648901 16-16]
 gi|435300895|gb|ELO76953.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 33944]
 gi|435311667|gb|ELO85773.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 76-2651]
 gi|435318838|gb|ELO91726.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 81-2625]
 gi|435326020|gb|ELO97854.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 62-1976]
 gi|435328164|gb|ELO99764.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 53-407]
 gi|435337844|gb|ELP07299.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 6.0562-1]
 gi|444859712|gb|ELX84652.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SE10]
 gi|444862629|gb|ELX87476.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. SE8a]
 gi|444866364|gb|ELX91095.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 20037]
 gi|444873481|gb|ELX97774.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 13-1]
 gi|444876223|gb|ELY00405.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 18569]
 gi|444884665|gb|ELY08486.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. PT23]
 gi|444890007|gb|ELY13382.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. 436]
          Length = 1160

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP +++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPESLENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+  R  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDETREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|398873957|ref|ZP_10629200.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM74]
 gi|398197657|gb|EJM84632.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM74]
          Length = 1173

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1188 (42%), Positives = 742/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLVMNAEGYRNLTELISRGFIDGQRNGAIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +     GLI LS A  G+IG A+ +G    AE  AR W ++FPD FY+EIQR  +PN  
Sbjct: 121  AEANA--GLIMLSAAKEGEIGQAMLSGNPAEAETLAREWMEVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R  G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARLAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLTAMEEAIKAAEQTARTQDSGHSDLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  + ++ +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFSEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +++  +++  +  AR    +   +  +    +   +  L ++L R   +  
Sbjct: 1068 VSNDDFSGGLKLRVKRVMSMEDARTNLAESLRLKLHAKDLKGDQLRWLGELLKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMDYT-SPDAKALLQFGEGWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|397663521|ref|YP_006505059.1| DNA polymerase III subunit alpha [Legionella pneumophila subsp.
            pneumophila]
 gi|395126932|emb|CCD05115.1| DNA polymerase III alpha subunit [Legionella pneumophila subsp.
            pneumophila]
          Length = 1148

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1162 (43%), Positives = 745/1162 (64%), Gaps = 28/1162 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL++I  +++A        +A+TD  NLF  +K +KSA   G
Sbjct: 1    MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +         L+LL ++  GY  L  L+SKAY E   +G+  ++++W+
Sbjct: 61   IKPIIGSDLPCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQPRVQLQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  +  GLIALSG   GDIG A+    + +A   A  W  +FP+ FY+EIQR  + +  
Sbjct: 121  PE--FSQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRTGRADEL 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ I +A  + LP+VAT+ ++F+ + +F AHE R CI EG  L++ +R+++++ +Q 
Sbjct: 179  HYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQYSSQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+QNT+EI+KRCN+KLE G   LP FP P    +  +L   S+ 
Sbjct: 239  LRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTVEAYLSHLSEI 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L++D    +    R  Y KRL+ E++ I  M F+GYFLIV+DFIQWAK N +
Sbjct: 299  GLEERLKQLFRDKSEGELLAARGDYDKRLKIELDVINNMGFAGYFLIVADFIQWAKQNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITLS A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLSKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R + EEEV++L +LA ++EG+ RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  MEQEEELRRRYEEEEEVKELFDLALKLEGVTRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
            T I+SQ+DKDD+E +GL+KFDFLGL TL+I+D  +  + K   N   +   ++++P +D 
Sbjct: 537  TQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPIDISQIPTSDD 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  STFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F     +    K I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLQVLPPSINNSMYHF-----TVSDEKTIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S IE I+ ER + G F +LF F +R+D + +NRR+I +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDIWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   ++   ++  NYV+  SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQ--NYVESKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E+  FI + + +L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADRYRRELGDFI-VPVGQLNPSLHKKAIICAQVVAIRKIITKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD +  ++ ++  +++E+  + L    +L++ G+V  D +   +++ A ++  I  
Sbjct: 1008 IIGMDDATARIDTVVFGEIFEQYSDPLATGNMLVIEGEVAIDDYNGGVKMTANQLLSIAS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  N+  N ++L  I    K  +G   V     N   K  +     + V 
Sbjct: 1068 ARTKFARCLELRLNQN-NAAVLPSIQSLLKTYSGRCAVQLAYANGVAKANLNLGQQWCVT 1126

Query: 1128 PIDDLKLALIN-LGLYNAIIEY 1148
            P D+L   L N LG    I+ Y
Sbjct: 1127 PSDELIGLLSNLLGEEQVIMRY 1148


>gi|418295729|ref|ZP_12907579.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri ATCC 14405 =
            CCUG 16156]
 gi|379067062|gb|EHY79805.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri ATCC 14405 =
            CCUG 16156]
          Length = 1173

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1187 (42%), Positives = 742/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MPVSFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SRL LL  N  GY  L EL+S+ + E        I  +W+
Sbjct: 61   IKPICGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELVSRGWTEGQRNDLVIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +G+IALSGA  G++G A+ NG   +AE+    W ++F D FY+EIQR  + N  
Sbjct: 121  KQAA--EGVIALSGAKEGEVGQALLNGDEALAESRLAEWREVFADRFYLEIQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FLK+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALAERSGTPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF D+P A++NT+EIAKRCN++++ G   LP FP P+ + I+D+L   S  
Sbjct: 239  LKTPEEMAELFSDLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL +RL + L KD   Y+ +K  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLDERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +  +E+ R++ E+A+++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLSVDEDAREIWEMARKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K+     +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVESAGLVKFDFLGLRTLTIIKWALETINREQAKSGLEPINIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+ K  +  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCSSNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY S FMAA LS  M +T+K+ IL+++  ++  L I PP++N+S++ F   +  DG   
Sbjct: 777  AHYPSPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVNVSEFKF--TVNDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGA+KG G+  +EAI   R + G F +LFDF  RID K IN+R + +LI SGA D
Sbjct: 831  RIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A+++AE+T + ++   + LF          
Sbjct: 891  RLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQSAEQTARSLDSGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTV 989
             Y N+      S K+ L  EK  LG  L+ H    YE E+R+F    + +L+P     T+
Sbjct: 951  VYANHRNARDLSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIIDLRPARGEQTI 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  I +DD S  +E  +  + +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFNTAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   V          LK   +R+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVAG----EALKGERMRWLAEVCGRHRGAC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y   +  +  ++F   +++ P D+L  AL +  G  N  ++Y
Sbjct: 1127 PITLEYT-GRDARALLQFGEAWRIDPADNLIQALRDQFGRDNVFLQY 1172


>gi|440737180|ref|ZP_20916753.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens BRIP34879]
 gi|447915651|ref|YP_007396219.1| DNA polymerase III subunit alpha [Pseudomonas poae RE*1-1-14]
 gi|440382362|gb|ELQ18866.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens BRIP34879]
 gi|445199514|gb|AGE24723.1| DNA polymerase III subunit alpha [Pseudomonas poae RE*1-1-14]
          Length = 1173

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1190 (42%), Positives = 743/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGVDLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+I LS A  G+IGIA+  G    AE  AR W ++FPD FYIE+QR  +PN  
Sbjct: 121  AQA--SEGVIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYIEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L +D  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPRDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPHFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTEALKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  N + K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYTGNDA-KAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|154271|gb|AAA27191.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium]
          Length = 1160

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 733/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+ FC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVSFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             +  MAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEIMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T SG++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTASGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAGLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|192360327|ref|YP_001981623.1| DNA polymerase III subunit alpha [Cellvibrio japonicus Ueda107]
 gi|190686492|gb|ACE84170.1| DNA polymerase III, alpha subunit [Cellvibrio japonicus Ueda107]
          Length = 1177

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1090 (44%), Positives = 713/1090 (65%), Gaps = 44/1090 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+E+S+ D L+RI  +I+  A    PA AITD +N +G+IKFYK+A   GIKPI
Sbjct: 6    FVHLRLHTEFSLSDSLVRIKPLIKRVAELNMPACAITDQTNFYGLIKFYKAAQGTGIKPI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D  + +   + KP+ L LL  NN GY  + EL+S+A+      G A I+ EW+  ++
Sbjct: 66   AGSDFLMASHETDGKPTLLTLLAMNNQGYKNIIELISRAWRSGQQQGIAYIQREWI--SE 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
            Y +G+IALSG   GD+G+A+  GR   A+   + W + FP+ FY+E+QR  + N    + 
Sbjct: 124  YSEGVIALSGGKFGDVGMALLGGRQAQAQELLQGWMRDFPNRFYLELQRTGRENDENYLH 183

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              +++A+ +  P+VAT+ ++FLK +EF  HE R CI EG  L + +R ++++ +Q  ++ 
Sbjct: 184  AAVDLAAQMQCPVVATNDVRFLKTSEFEVHEARVCIGEGRTLDDPRRERRYSDQQYLRSA 243

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM++LF DIP AI N++EIAKRC + ++ GK  LP++P P+ +   +F    S  GL  
Sbjct: 244  EEMVELFSDIPEAIANSVEIAKRCTITIQMGKYFLPEYPVPEGLTEAEFFRKISLEGLDW 303

Query: 305  RLLN-LYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            RL   L K    Y   +  Y++RL FE++ II+M F GYFLIV DFIQWAK++ IPVGPG
Sbjct: 304  RLEKILDKSLPDYAERRKVYEERLNFELDIIIQMGFPGYFLIVMDFIQWAKDHDIPVGPG 363

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI YV + 
Sbjct: 364  RGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIAYVAEN 423

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP  PG  +TL+ A++EEP
Sbjct: 424  YGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPTPG--MTLAQALEEEP 481

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
            QL E +  + + +++ E+A Q+EG+ RNVG HAGGV+IAP+KL +F PL+  E  +G+++
Sbjct: 482  QLKEFLAQDGDAQEIWEMAVQLEGLTRNVGKHAGGVVIAPTKLTDFAPLFCDETGSGLVT 541

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK--TTNFSLNKLPLNDKDTYNL 601
            Q+DK D+EE GL+KFDFLGL TL+I+D     I K   K   +   +N +PL+D  T+ L
Sbjct: 542  QFDKGDVEEAGLVKFDFLGLRTLTIIDWARIMIDKQRRKRGESPLDINAIPLDDAKTFGL 601

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGEY 659
            LK+A T AVFQLES+GMK+++K  +PD  E++IAL++L+RPGP++  ++ +F  RKHG  
Sbjct: 602  LKRAETTAVFQLESRGMKDLIKRLQPDNIEDLIALVALFRPGPLESGMVDDFINRKHGRA 661

Query: 660  -FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
               YPD +      K VL  TYG++VYQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  E
Sbjct: 662  EVAYPDAKFQHASLKPVLEPTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 721

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYA++SY TA+LK HY 
Sbjct: 722  MAKQRSVFEEGAKKQGVDPDLAIKIFDLVEKFAGYGFNKSHSAAYAIVSYQTAWLKAHYP 781

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD T+K+   +++  +T  L +LPP++N  +++F   ++  G   +I Y
Sbjct: 782  AHFMAATMSSDMDKTDKVVTFIEEC-RTMKLKLLPPDVNSGEFHF--TVDDAG---RIIY 835

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF-- 890
            GLGAIKG G+  +E+I+  R   G F +LFDF  R+D + +N+R + ++I SGA D    
Sbjct: 836  GLGAIKGLGEGPVESIIAARNDGGPFKDLFDFCARVDARKVNKRALEAIIRSGAADSLGP 895

Query: 891  ---------NEKRYMLVASIDVALKNAEKTKKFIN--QLSLF-----KNDDNNNLKEYLN 934
                     +  R ++ +++  A+K AE+     N   + LF       +  N++  Y +
Sbjct: 896  TYDTPEYNIDHDRAVMFSAMAEAVKTAEQATANSNAGMMDLFGAVMASEESTNDV--YAD 953

Query: 935  YVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGII 993
            + +V +W+ K+ L  EK+ LG  L+ H    YE+E+  F+   ++ LKP     T++G+I
Sbjct: 954  FRRVRTWTIKERLHAEKETLGLYLTGHPIDEYESELSHFVSSRIANLKPEKGNQTIAGLI 1013

Query: 994  TELKLKTTYRGK-ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
               ++  T RG  + I+ +DD +  +++ +  + Y   +++L ++ LL++SG+V  D F 
Sbjct: 1014 ISQRIVKTKRGDNMAILTLDDRTGRMDITLFAEAYNNARDLLLKDGLLVISGQVRYDDFS 1073

Query: 1053 KNIRINAEKI 1062
              ++++AE +
Sbjct: 1074 GMLKMSAETV 1083


>gi|14194702|sp|Q9XDH6.1|DPO3A_PSEFL RecName: Full=DNA polymerase III subunit alpha
 gi|5531684|gb|AAD44402.1|AF062919_1 DNA polymerase III [Pseudomonas fluorescens]
          Length = 1173

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1190 (42%), Positives = 740/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LLV N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+  G    AE  AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--NEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P AI+NT+EIAKRCN+ ++ GK  LP +P P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV R     +   D +SK++PF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMVPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ K D  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       + VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K+AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y  + K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YAIHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|398877496|ref|ZP_10632641.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM67]
 gi|398884014|ref|ZP_10638960.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM60]
 gi|398195643|gb|EJM82677.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM60]
 gi|398202391|gb|EJM89237.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM67]
          Length = 1173

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1190 (42%), Positives = 740/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK++   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKASMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNALSRISLLAMNAVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IG+A+ +G    AE  AR W  +FPD FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGLAMLSGNPAEAEKLAREWMAVFPDRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EQLHGAVALAEKIGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF DIP A++NT+EIAKRCN++++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDIPEALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLTVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+++D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTVIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCKTNNIEADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ I+T  L +  P++N S++ F   +  +G  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-IRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             ++ R +L+ +++ A+K AE+T +  +         LF   D +
Sbjct: 891  RLGPYFHDEPKAYQASIDQNRAVLLNAMEGAIKAAEQTARTHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTKDLKGDQLRWLGELFKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  +   K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITMEYT-SPDAKALLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172


>gi|407802912|ref|ZP_11149751.1| DNA polymerase III subunit alpha [Alcanivorax sp. W11-5]
 gi|407023072|gb|EKE34820.1| DNA polymerase III subunit alpha [Alcanivorax sp. W11-5]
          Length = 1166

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1109 (43%), Positives = 712/1109 (64%), Gaps = 49/1109 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR+H++YS++DG+ R+  +++   +   PA+A+TD SNLF +IKFYK+A   GIK
Sbjct: 4    PAFIHLRVHTDYSLVDGVARVKPLVKQCVSRQMPAVAVTDDSNLFCLIKFYKAAQGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI G D+W+ + +  ++P+RL  LV+N  GY  L  L+S+A+  N   GRA +R EWL  
Sbjct: 64   PIAGADLWLESTV-LEEPARLCALVQNGTGYQNLTLLISRAWQHNQQRGRAVVRREWL-- 120

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            ++  +GLI LS A  G++G  +  G+ + A   A  +  +  D FYIE+QR  +P     
Sbjct: 121  DELHEGLIFLSAARQGEVGQLLLAGKQEEATQVASGFRDLCGDRFYIEVQRTSRPGDEHC 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +AS ++LP+VAT+ ++FL++ +F AHE R CI +G  + + +R +K++ +Q  K
Sbjct: 181  LHASVALASALDLPVVATNDVRFLRQDDFEAHEARVCIHDGAAIDDPRRPRKYSDQQYLK 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF D+P A+ NT+EIA+RC+L +   +  LP FP P    I  F+  +S+ GL
Sbjct: 241  SAEEMAELFSDLPEALANTVEIARRCSLDIRLNENFLPDFPIPDGYTIEQFIQEESRRGL 300

Query: 303  KKRLLNLYKDP--EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
             KRL  L  DP  E Y   +  Y+ RLQFE++TI  M F GYFLIVSDFI+WAK N +PV
Sbjct: 301  DKRL-ALILDPAAEDYAARRKEYEDRLQFELDTINSMGFPGYFLIVSDFIRWAKENGVPV 359

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI YV
Sbjct: 360  GPGRGSGAGSLVAYSLEITDLDPIEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIAYV 419

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D+YG+ AV QI+TFGTMAAK  +RDV RV    Y   D +SK+IP  PG  +TL  A++
Sbjct: 420  ADKYGRAAVGQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPPTPG--MTLEKALE 477

Query: 481  EEPQLAERIKN-----EEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
            +E  L + + N     +E   ++ E+A ++EG+ RNVG HAGGV+IAP +L +F PL+  
Sbjct: 478  QEEVLRDFLNNSENSDQESAAEIWEMALKLEGLTRNVGKHAGGVVIAPGQLTDFAPLHCD 537

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNK 590
            E    +++Q+DKDD+E  GL+KFDFLGL TL+I+D   + +K +N +          + +
Sbjct: 538  EHGENLVTQFDKDDVEAAGLVKFDFLGLKTLTIID---WAVKAVNARRAREGEAPLDITQ 594

Query: 591  LPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LI 648
            +PL D  ++ LLK+  T AVFQLESQGMK ++K+ KPD FE+IIAL++LYRPGP++  ++
Sbjct: 595  IPLEDSPSFELLKRGETTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRPGPLESGMV 654

Query: 649  KNFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLL 702
             NF  RKHG E   YPDP+      K +L  TYG+++YQEQVMQIAQ+L GYSLG AD+L
Sbjct: 655  DNFINRKHGREPLAYPDPQYQHELLKPILEPTYGVILYQEQVMQIAQVLAGYSLGGADML 714

Query: 703  RRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLS 762
            RRA+GKKK  EM + R+ F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL++
Sbjct: 715  RRAMGKKKPEEMAKQREVFEEGARNKGIDGDLAIKIFDLVEKFAGYGFNKSHSAAYALVA 774

Query: 763  YYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPII 822
            Y TA+LK HY + FMAA +S  M +T+K+   + D  K+ GL++LPP++N   Y F   +
Sbjct: 775  YQTAWLKVHYPAEFMAAVISADMQNTDKVVTFI-DECKSMGLNVLPPDVNSCGYRF--TV 831

Query: 823  ESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSL 881
              DG    I YGLGAIKG G+  I+AIV  R+ G  F +LFDF +R+D K INRR + +L
Sbjct: 832  NQDG---DIVYGLGAIKGLGEGPIDAIVQAREQGVVFDDLFDFCRRVDMKRINRRSMEAL 888

Query: 882  INSGAFDCF-----NEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLN 934
            + +GA D       +  R +L+AS+  A + AE+  +        LF      +    + 
Sbjct: 889  VRAGALDKLGPTQHHRDRAILMASLADATQAAEQDARNAEAGMSDLFGGGAEVSATP-VA 947

Query: 935  YVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSG 991
            + +   W+    L  E+  LG  L+ H    +E E+ +F+   L+ L PT    + T++G
Sbjct: 948  WKQARIWNDDLRLNGERDTLGLFLTGHPIDQFEREVERFVSARLNALTPTGKGEAATIAG 1007

Query: 992  IITELKLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049
            ++  +++  + R   ++  + +DD +  VEV +  + + +  ++++++ LL+V G V  D
Sbjct: 1008 LVVAMRITRSKRSGERMAFLTLDDKTGRVEVSVFGRTFAQYGDMVQKDVLLVVRGGVRHD 1067

Query: 1050 RFLKNIRINAEKIFDINVARILYGKKFSV 1078
             +     ++A++I DI  AR ++ ++  V
Sbjct: 1068 DYTGGFSMSADEILDIGRARAMFARRLMV 1096


>gi|397687885|ref|YP_006525204.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 10701]
 gi|395809441|gb|AFN78846.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 10701]
          Length = 1173

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1187 (42%), Positives = 739/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+H+EYS++DGL+R+  +++  A+   PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MPVSFVHLRVHTEYSLVDGLVRVKPLVKTVASAGMPAVAVTDQSNMCSLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E        I  +W+
Sbjct: 61   VKPICGADIWLASRDEDGPLSRLTLLAMNGQGYRNLTELVSRGWAEGQRNDLVIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    DGLIALSG+  G++G A+ NG   +A+     W +IFP+ FY+E+QR  + N  
Sbjct: 121  KQAA--DGLIALSGSKEGEVGQALLNGEQGLADALLAEWCEIFPERFYLEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FLK+ +F AHE R CI EG +L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALAERSGTPLVATNDVRFLKQEDFEAHETRVCIGEGRVLGDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT +EM +LF D+P A++NT+EIAKRCN++++ G   LP FP P+ + I+D+L   S  
Sbjct: 239  LKTPAEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ +K  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKKQVYVDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              E  L + +  +E+ +++ ++A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  DMEEPLRDFLAVDEDAKEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCTNNGIEPELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY S FMAA LS  M +T+K+ IL+++  ++  L I PP++N+S++ F   +  DG   
Sbjct: 777  AHYPSPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVNVSEFKF--TVNDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGA+KG G+  +EAI   R + G F +LFDF  RID K IN+R + +LI SGA D
Sbjct: 831  RIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKF--INQLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +      + LF          
Sbjct: 891  RLGPYFHDEPKAYQANIDRNRAVLLAAMEEAVQAAEQTARSEESGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ K    S K+ L  EK  LG  L+ H    YE E+R+F    + +L+P     TV
Sbjct: 951  VYANHRKARELSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIIDLRPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  I +DD S  +E  +  + +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFNTAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   V   R      LK   +R+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVAR----EALKGDRMRWLADVCGRHRGAC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y      +  ++F  ++++ P D L   L +  G  N  ++Y
Sbjct: 1127 PITLEYT-GSDARALLQFGESWRIDPADQLIQVLRDQFGRDNVFLQY 1172


>gi|397666642|ref|YP_006508179.1| DNA polymerase III subunit alpha [Legionella pneumophila subsp.
            pneumophila]
 gi|395130053|emb|CCD08286.1| DNA polymerase III alpha subunit [Legionella pneumophila subsp.
            pneumophila]
          Length = 1148

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1162 (43%), Positives = 747/1162 (64%), Gaps = 28/1162 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL++I  +++A        +A+TD  NLF  +K +KSA   G
Sbjct: 1    MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +         L+LL ++  GY  L  L+SKAY E   +G+  ++++W+
Sbjct: 61   IKPIIGSDLPCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQPRVQLQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  +  GLIALSG   GDIG A+    + +A   A  W  +FP+ FY+EIQR  + +  
Sbjct: 121  PE--FSQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRTGRADEL 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ + +A  + LP+VAT+ ++F+ + +F AHE R CI EG  L++ +R+++++ +Q 
Sbjct: 179  HYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQYSSQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+QNT+EI+KRCN+KL+ G   LP FP P    +  +L   S+ 
Sbjct: 239  LRSADEMELLFSDLPSALQNTVEISKRCNVKLDLGHNYLPNFPIPNGTTVEAYLSHLSEI 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L++D    +    R  Y KRL+ E++ I  M F+GYFLIV+DFIQWAK N +
Sbjct: 299  GLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVADFIQWAKQNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITLS A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLSKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R + EEEV++L +LA ++EGI RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  MEQEEELRRRYEEEEEVKELFDLAMKLEGITRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
            T I+SQ+DKDD+E +GL+KFDFLGL TL+I+D  +  + K   N   +   ++++P +D+
Sbjct: 537  TQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPIDISQIPTSDE 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  STFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGSADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F     +    K I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLQVLPPSINNSMYHF-----TVSDEKTIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S IE I+ ER + G F +LF F +R+D + +NRR+I +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDIWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   ++   ++  NYV+  SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQ--NYVESKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E+  FI + +S+L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADQYRRELGDFI-VPVSQLNPSLHKKAIICAQVVAIRKIITKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD +  ++ ++  +++E+  + L    +L++ G+V  D +   +++ A ++  I  
Sbjct: 1008 IIGMDDATARIDAVVFGEIFEQYSDPLVTGNMLVIEGEVAIDDYNGGVKMTANQLLSIAS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  ++  N ++L  I    K  +G   V     N   K  +     + V 
Sbjct: 1068 ARTKFARCLELRLSQN-NAAVLPSIQSLLKTYSGRCAVQLAYANGVAKANLNLGQQWCVT 1126

Query: 1128 PIDDLKLALIN-LGLYNAIIEY 1148
            P D+L   L N LG    I+ Y
Sbjct: 1127 PSDELIGLLSNLLGEEQVIMRY 1148


>gi|432452938|ref|ZP_19695185.1| DNA polymerase III subunit alpha [Escherichia coli KTE193]
 gi|433031590|ref|ZP_20219415.1| DNA polymerase III subunit alpha [Escherichia coli KTE112]
 gi|430975532|gb|ELC92427.1| DNA polymerase III subunit alpha [Escherichia coli KTE193]
 gi|431561525|gb|ELI34894.1| DNA polymerase III subunit alpha [Escherichia coli KTE112]
          Length = 1160

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NNNGY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNNGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRAAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|295098673|emb|CBK87763.1| DNA polymerase III, alpha subunit [Enterobacter cloacae subsp.
            cloacae NCTC 9394]
          Length = 1160

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 739/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + +++ +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ +SG  +GD+G  +  G N + +     + + FPD +Y+E+ R  + +    
Sbjct: 124  --LNEGLLLISGGRMGDVGKCLLRGNNALVDQCVSFYEEYFPDRYYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  + K ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEAVRKEKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|432479508|ref|ZP_19721474.1| DNA polymerase III subunit alpha [Escherichia coli KTE210]
 gi|431011646|gb|ELD25721.1| DNA polymerase III subunit alpha [Escherichia coli KTE210]
          Length = 1160

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  TELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|395229062|ref|ZP_10407378.1| DNA polymerase III subunit alpha [Citrobacter sp. A1]
 gi|421844809|ref|ZP_16277966.1| DNA polymerase III subunit alpha [Citrobacter freundii ATCC 8090 =
            MTCC 1658]
 gi|424729161|ref|ZP_18157763.1| dna polymerase iii subunit alpha [Citrobacter sp. L17]
 gi|394717115|gb|EJF22813.1| DNA polymerase III subunit alpha [Citrobacter sp. A1]
 gi|411774288|gb|EKS57798.1| DNA polymerase III subunit alpha [Citrobacter freundii ATCC 8090 =
            MTCC 1658]
 gi|422895885|gb|EKU35671.1| dna polymerase iii subunit alpha [Citrobacter sp. L17]
          Length = 1160

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 742/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + ++L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVRSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G N + +     + + FP+ +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNNALVDECVAFYEEHFPNCYFLELIRTGRQDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   DFL++KS+ GL
Sbjct: 242  SEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|422768439|ref|ZP_16822164.1| DNA polymerase III [Escherichia coli E1520]
 gi|323935024|gb|EGB31397.1| DNA polymerase III [Escherichia coli E1520]
          Length = 1160

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NNNGY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNNGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|387505111|ref|YP_006157367.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            RM12579]
 gi|374357105|gb|AEZ38812.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            RM12579]
          Length = 1160

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  N++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GNMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFSEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|404398811|ref|ZP_10990395.1| DNA polymerase III subunit alpha [Pseudomonas fuscovaginae UPB0736]
          Length = 1174

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1187 (42%), Positives = 741/1187 (62%), Gaps = 53/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+RI  +++A      PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEFSLVDGLVRIKPLVKALNGMGMPAVAVTDQSNMCSLVKFYKAAMGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+      SR+ LL  N  GY  L EL+S+ YIE    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPEAPLSRISLLAMNAEGYRNLTELISRGYIEGQRNGLIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +     GLI LS A  G+IG+A+  G   +AE  A  W  IFPD FY+E+QR  +PN  
Sbjct: 121  AEAA--PGLIMLSAAKEGEIGMALVAGNPALAEALALEWMAIFPDRFYLEVQRTSRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  I  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALADRIGAPLVATNDVRFIKQDDFYAHETRVCIGEGRALDDPRRSRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSAEEMAELFSDLPEALENTVEIAKRCNISVQLGKYFLPDFPTPNGMGIDDYLRHVSHE 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +
Sbjct: 299  GLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVLRITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +E+ R++ E+A ++EG+ R  G HAGGV+IAP+KL +F P+   E  
Sbjct: 477  YEQEEMLRDFLKVDEDGREIWEMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K+   + +++ +PL+D+
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKSNLPDLNIDFIPLDDR 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  KTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYDGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCANNGIDGELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTH+ + FMAA LS  M +T+K+ IL+++ +++  L +  P++N S + F   +  DG  
Sbjct: 777  KTHHPAPFMAAVLSADMHNTDKVVILIEE-VRSMKLRLDAPDVNSSDFKF--TVNDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YGLGAIKG G+  +EAIV  R + G F +LFDF  R+D K IN+R +++LI SGA 
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAIVEARAEGGAFKDLFDFCSRVDLKRINKRTLDALIRSGAL 890

Query: 888  DCF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDN 926
            D                 +  R +L+A+++ A+K AE+T +  +         LF  +D 
Sbjct: 891  DRLGPYFHDEIKAYQANIDRNRAVLLAALEEAIKAAEQTARTADSGHADLFGGLFVEEDA 950

Query: 927  NNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS 986
            +    + N  ++   + K  L  EK  LG  L+ H    YE EIR+F    + +LKP   
Sbjct: 951  DVYGSHRNAREL---TLKDRLRGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARD 1007

Query: 987  C-TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044
              TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G
Sbjct: 1008 TQTVAGMIIALRVMKNKKGDKMGFITLDDRSARIEASLFADAFMAAQSLLQTDAMVVVEG 1067

Query: 1045 KVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG-L 1102
            +V  D F   +R+  +++  +  AR    +   + +      ++ L+ +   FK   G  
Sbjct: 1068 EVSNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKVQGAALKVNELRWLGDLFKQYRGAC 1127

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y      K  ++   ++K+ P D L  AL + LG  N  ++Y
Sbjct: 1128 PITLEYT-GPDAKALLQLGDSWKIDPADGLIQALRDQLGRDNVFLQY 1173


>gi|395233842|ref|ZP_10412080.1| DNA polymerase III subunit alpha [Enterobacter sp. Ag1]
 gi|394731698|gb|EJF31427.1| DNA polymerase III subunit alpha [Enterobacter sp. Ag1]
          Length = 1160

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1154 (43%), Positives = 736/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY S +  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGSGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + NE+   + S L +L  NN GY  L  L+S+AY          I  EWL  
Sbjct: 64   PIIGADFNVANELLGDELSHLTVLAANNEGYQNLTLLISRAYQRGYGAAGPIIDREWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GDIG ++  G   + +     W + F D FY+E+ R  + +    
Sbjct: 122  VELNEGLILLSGGRMGDIGKSLLRGNQLLVDQCLEFWQQHFADRFYLELIRTGRVDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALADERGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT   +   DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GEMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDDQGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRRAKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRGTFEEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +L P+IN   Y+F   +  DG   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLSPDINSGLYHFH--VNDDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G F +LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNQGGHFLDLFDLCARSDIKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ ++  ALK A++  K   I Q  +F        +   +Y  V  W ++  
Sbjct: 890  RLGPHRAALMNALGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVIPWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L E+ PT      T +G++   ++  T 
Sbjct: 950  LEGERETLGLYLTGHPINQYLKEIERYVGGMRLKEMHPTERGKMTTAAGLVIASRVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  +
Sbjct: 1070 LMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RVDARARL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   ++V P D L
Sbjct: 1129 RFGATWRVSPSDRL 1142


>gi|54296983|ref|YP_123352.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris]
 gi|53750768|emb|CAH12175.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris]
          Length = 1148

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1162 (43%), Positives = 745/1162 (64%), Gaps = 28/1162 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+E+S++DGL++I  +++A        +A+TD  NLF  +K +KSA   G
Sbjct: 1    MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+   +         L+LL ++  GY  L  L+SKAY E   +G+  ++++W+
Sbjct: 61   IKPIIGSDLPCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQPRVQLQWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  +  GLIALSG   GDIG A+    + +A   A  W  +FP+ FY+EIQR  + +  
Sbjct: 121  PE--FSQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRTGRADEL 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               ++ + +A  + LP+VAT+ ++F+ + +F AHE R CI EG  L++ +R+++++ +Q 
Sbjct: 179  HYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQYSSQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF D+PSA+QNT+EI+KRCN+KLE G   LP FP P    +  +L   S+ 
Sbjct: 239  LRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTVEAYLSHLSEI 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L++D    +    R  Y KRL+ E++ I  M F+GYFLIV+DFIQWAK N +
Sbjct: 299  GLEERLKQLFRDKSEGELLVARGEYDKRLKIELDVINNMGFAGYFLIVADFIQWAKQNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC EGRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMEGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG+ +VSQI+TFGTMAAK  +RDVGRVL   Y F D ++KLIPF+ G  ITLS A
Sbjct: 419  YVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFELG--ITLSKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L  R + EEEV++L +LA ++EG+ RN G HAGGV+IAPS+L +F  +Y +EG 
Sbjct: 477  MEQEEELRRRYEEEEEVKELFDLALKLEGVTRNAGKHAGGVVIAPSQLTDFTAIYCEEGS 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
            T I+SQ+DKDD+E +GL+KFDFLGL TL+I+D  +  + K   N   +   ++++P +D 
Sbjct: 537  TQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPIDISQIPTSDD 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK   T AVFQLES+GMK ++   +PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 597  STFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQSGMVDDFIDR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  E
Sbjct: 657  KHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY 
Sbjct: 717  MAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA +S  MD+T+K+   + D      L +LPP+IN S Y+F     +    K I Y
Sbjct: 777  AAFMAAVMSSDMDNTDKVVTFI-DECAHMKLQVLPPSINNSMYHF-----TVSDEKTIIY 830

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S IE I+ ER + G F +LF F +R+D + +NRR+I +LI SGAFD +  
Sbjct: 831  GLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDIWKV 890

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
            +R +L AS++ ALK AEK    +   Q  LF   ++   ++  NYV+  SWS+ Q L  E
Sbjct: 891  ERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQ--NYVESKSWSEAQRLEGE 948

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS--CTVSGIITELKLKTTYRGKILI 1008
            ++VLGF L+ H    Y  E+  FI + + +L P+      +   +  ++   T RGK L+
Sbjct: 949  REVLGFYLTGHPADRYRRELGDFI-VPVGQLNPSLHKKAIICAQVVAIRKIITKRGKKLV 1007

Query: 1009 IV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            I+ +DD +  ++ ++  +++++  + L    +L++ G+V  D +   I++ A ++  I  
Sbjct: 1008 IIGMDDATARIDAVVFGEIFDQYSDPLATGNMLVIEGEVAIDDYNGGIKVTANQLLSIAS 1067

Query: 1068 ARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            AR  + +   +  N+  N ++L  I    K  +G   V     N   K  +     + V 
Sbjct: 1068 ARTKFARCLELRLNQN-NAAVLPSIQSLLKTYSGRCAVQLAYANGVAKANLNLGQQWCVT 1126

Query: 1128 PIDDLKLALIN-LGLYNAIIEY 1148
            P D+L   L N LG    I+ Y
Sbjct: 1127 PSDELIGLLSNLLGEEQVIMRY 1148


>gi|419332445|ref|ZP_13874012.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC12D]
 gi|378192328|gb|EHX52891.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC12D]
          Length = 1160

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY     ++  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADVRARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|395500365|ref|ZP_10431944.1| DNA polymerase III subunit alpha [Pseudomonas sp. PAMC 25886]
          Length = 1173

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1190 (42%), Positives = 743/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    AE  AR W  +FP+ FY+EIQR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGIALLGGNPHEAEVLAREWMDVFPNRFYLEIQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
             Q+   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EQLHAAVALAEKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF   D +
Sbjct: 891  RLGPHFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVRTDALKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y  N + K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYTGNDA-KAMLQFGETWRIDPGDGLIQALRDQFGRDNVFLQY 1172


>gi|455643781|gb|EMF22905.1| DNA polymerase III subunit alpha [Citrobacter freundii GTC 09479]
          Length = 1160

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 742/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + ++L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVRSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G N + +     + + FP+ +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNNALVDECVAFYEEHFPNCYFLELIRTGRQDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   DFL++KS+ GL
Sbjct: 242  SEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|392420731|ref|YP_006457335.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri CCUG 29243]
 gi|390982919|gb|AFM32912.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri CCUG 29243]
          Length = 1173

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1187 (42%), Positives = 740/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MPVSFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SRL LL  N  GY  L EL+S+ + E        I  +W+
Sbjct: 61   IKPICGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLVIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +G+IALSGA  G++G A+ NG   +AE+    W  +F D FY+E+QR  + N  
Sbjct: 121  KQAA--EGVIALSGAREGEVGQALLNGDEALAESRLAEWRDVFADRFYLEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FLK+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVALAGRSGTPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT +EM +LF D+P A++NT+EIAKRCN++++ G   LP FP P+ + I+D+L   S  
Sbjct: 239  LKTPAEMAELFSDLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ +K  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +  +E+ R++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPINIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+ K  +  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCSNNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY S FMAA LS  M +T+K+ IL+++  ++  L I PP++N+S++ F   +  DG   
Sbjct: 777  AHYPSPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVNISEFKF--TVNDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGA+KG G+  +EAI   R + G F +LFDF  RID K IN+R + +LI SGA D
Sbjct: 831  RIVYGLGAVKGVGEGPVEAIAECRAEGGSFKDLFDFCARIDLKRINKRTLEALIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFI--NQLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +      + LF          
Sbjct: 891  RLGPYFFEEVKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTV 989
             Y N+ K    S K+ L  EK  LG  L+ H    YE E+R+F    + +L+P     T+
Sbjct: 951  VYANHRKARELSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVDLRPARGEQTI 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  I +DD S  +E  +  + +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFNTAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   V          LK   +R+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVAG----EALKGERMRWLAEVCGRHRGAC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y   +  +  ++F   +++ P D+L  AL +  G  N  ++Y
Sbjct: 1127 PITLEYT-GRDARALLQFGEAWRIDPADNLIQALRDQFGRDNVFLQY 1172


>gi|417700186|ref|ZP_12349334.1| DNA polymerase III subunit alpha [Shigella flexneri K-218]
 gi|418252923|ref|ZP_12878345.1| DNA polymerase III, &alpha subunit [Shigella flexneri 6603-63]
 gi|333009444|gb|EGK28900.1| DNA polymerase III subunit alpha [Shigella flexneri K-218]
 gi|397901990|gb|EJL18326.1| DNA polymerase III, &alpha subunit [Shigella flexneri 6603-63]
          Length = 1160

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTMRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|387892469|ref|YP_006322766.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens A506]
 gi|423690352|ref|ZP_17664872.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens SS101]
 gi|387162121|gb|AFJ57320.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens A506]
 gi|388000116|gb|EIK61445.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens SS101]
          Length = 1173

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1190 (42%), Positives = 741/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    AE  AR W ++FP  FY+E+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPGRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTEALKGDQLRWLGDLLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y      K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYT-GSDAKAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|291281006|ref|YP_003497824.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            CB9615]
 gi|416819016|ref|ZP_11893086.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. USDA
            5905]
 gi|419124153|ref|ZP_13669063.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC5C]
 gi|419140149|ref|ZP_13684933.1| DNA polymerase III subunit alpha [Escherichia coli DEC5E]
 gi|425246541|ref|ZP_18639780.1| DNA polymerase III subunit alpha [Escherichia coli 5905]
 gi|209745710|gb|ACI71162.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|290760879|gb|ADD54840.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            CB9615]
 gi|320663614|gb|EFX30898.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. USDA
            5905]
 gi|377978947|gb|EHV42226.1| DNA polymerase III subunit alpha [Escherichia coli DEC5E]
 gi|377983872|gb|EHV47114.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC5C]
 gi|408175523|gb|EKI02425.1| DNA polymerase III subunit alpha [Escherichia coli 5905]
          Length = 1160

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  N++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GNMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|408483302|ref|ZP_11189521.1| DNA polymerase III subunit alpha [Pseudomonas sp. R81]
          Length = 1173

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1190 (42%), Positives = 741/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++       PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  L EL+S+ +I+    G   I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LS A  G+IGIA+  G    AE  A+ W ++FPD FY+E+QR  +PN  
Sbjct: 121  AEA--SEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+KK +F AHE R CI EG  L + +R K +++EQ 
Sbjct: 179  EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN++++ GK  LP FP P  + I+++    S  
Sbjct: 239  LKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL + L KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  IRDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ ++A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+DK
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+ +++ A+K AE+T +  +         LF  +D +
Sbjct: 891  RLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+  +++  +  AR    +   +          LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL----KVKTEALKGDQLRWLGELLKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y      K  ++F   +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPVTMEYT-GSDAKAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172


>gi|417715483|ref|ZP_12364421.1| DNA polymerase III subunit alpha [Shigella flexneri K-227]
 gi|333021818|gb|EGK41067.1| DNA polymerase III subunit alpha [Shigella flexneri K-227]
          Length = 1160

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGYALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I ++DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICMLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|170682325|ref|YP_001742312.1| DNA polymerase III subunit alpha [Escherichia coli SMS-3-5]
 gi|170520043|gb|ACB18221.1| DNA polymerase III, alpha subunit [Escherichia coli SMS-3-5]
          Length = 1160

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A +  LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  I L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|432390078|ref|ZP_19632944.1| DNA polymerase III subunit alpha [Escherichia coli KTE21]
 gi|432717197|ref|ZP_19952201.1| DNA polymerase III subunit alpha [Escherichia coli KTE9]
 gi|432791410|ref|ZP_20025507.1| DNA polymerase III subunit alpha [Escherichia coli KTE78]
 gi|432797380|ref|ZP_20031409.1| DNA polymerase III subunit alpha [Escherichia coli KTE79]
 gi|430923691|gb|ELC44426.1| DNA polymerase III subunit alpha [Escherichia coli KTE21]
 gi|431267318|gb|ELF58836.1| DNA polymerase III subunit alpha [Escherichia coli KTE9]
 gi|431343078|gb|ELG30048.1| DNA polymerase III subunit alpha [Escherichia coli KTE78]
 gi|431346594|gb|ELG33499.1| DNA polymerase III subunit alpha [Escherichia coli KTE79]
          Length = 1160

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A +  LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVMRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417975906|ref|ZP_12616702.1| DNA polymerase III subunit alpha [Escherichia coli XH001]
 gi|344194304|gb|EGV48378.1| DNA polymerase III subunit alpha [Escherichia coli XH001]
          Length = 1160

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAGMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|419956564|ref|ZP_14472631.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            GS1]
 gi|388608321|gb|EIM37524.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            GS1]
          Length = 1160

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1151 (43%), Positives = 739/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + +++ +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ +SG  +GD+G  +  G N + +     + + FPD +Y+E+ R  + +    
Sbjct: 124  --LNEGLLLISGGRMGDVGKCLLRGNNALVDQCVSFYEEYFPDRYYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEARGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  + K ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEAVRKEKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417731663|ref|ZP_12380337.1| DNA polymerase III subunit alpha [Shigella flexneri 2747-71]
 gi|332762055|gb|EGJ92326.1| DNA polymerase III subunit alpha [Shigella flexneri 2747-71]
          Length = 1160

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTEHGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|254513858|ref|ZP_05125919.1| putative DNA polymerase IIIalpha subunit subfamily [gamma
            proteobacterium NOR5-3]
 gi|219676101|gb|EED32466.1| putative DNA polymerase IIIalpha subunit subfamily [gamma
            proteobacterium NOR5-3]
          Length = 1168

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1068 (43%), Positives = 699/1068 (65%), Gaps = 31/1068 (2%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            + +F+HLR+HSEYS+ DGL+RI  +    A    PA+A+TD+ N +G+IKF+K+A + G+
Sbjct: 1    MSEFVHLRVHSEYSLKDGLVRIKSLAARVAELEMPAVAVTDVCNFYGLIKFHKAAVSAGV 60

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            KPI G DVW+T+ +++     L LLV N  GYL L  LLS+AY E        +  EWL 
Sbjct: 61   KPIFGADVWVTDSLKSDDAYPLCLLVMNPEGYLNLTRLLSRAYREGQTLDGPRVLWEWL- 119

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
             ++  +GL+ALS    G++G A+ N + D+A     R   +FP  FY+E+ R  +     
Sbjct: 120  -SEAGEGLLALSCGAAGEVGQALVNEKMDLARQRMERCLAVFPGRFYLELHRTGRVGDEE 178

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +   +++A+  N P+VAT+ ++F+  +EF AHE R CIAE  +L + +R +++++EQ  
Sbjct: 179  HVHAALDLATQFNCPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQRRYSQEQYL 238

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            ++  EM +LF DIP A++NT+ IA+RC++++E G+  LP++P P  + ++ F    +  G
Sbjct: 239  RSSEEMQELFEDIPEALENTLAIARRCSMEMELGRVCLPEYPVPDGMTMDTFFRESAHRG 298

Query: 302  LKKRL--LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            L +RL  L +++       E+  Y++RL FE++TII M F GYFLIV DFI+WAK + IP
Sbjct: 299  LDERLQTLQIHRRENAQALER-EYRERLDFELDTIIAMGFPGYFLIVMDFIRWAKEHGIP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSLSITD+DP+ Y LLFERFLNP R+SMPDFD+DFC E RD VI Y
Sbjct: 358  VGPGRGSGAGSLVAYSLSITDLDPIEYELLFERFLNPERVSMPDFDVDFCMERRDEVIDY 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGT+AAK  +RDV RV    Y   D +SK+IPF+ G  +TL  AI
Sbjct: 418  VADLYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFEVG--MTLQKAI 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + ++++ E +++ ++A Q+EGI RNVG HAGGV+IAPS+L +F  LY      
Sbjct: 476  EQEESLQQFLRDDGEAQEIWDMAVQLEGITRNVGKHAGGVVIAPSELTDFSALYCDGEGA 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
            G+++Q+DK+D+E+ GL+KFDFLGL TL+I+D     I +I  +       +N++PL+D  
Sbjct: 536  GLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARQDEPPLDINQIPLDDHA 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LL+ A T AVFQLES+GMK ++   +PD FE+IIAL++LYRPGP+   ++ NF  RK
Sbjct: 596  SFELLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQIL GY+LG ADLLRRA+GKK
Sbjct: 656  HGREKVSYPDAEYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  GA   G+    A ++F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK
Sbjct: 716  KPEEMAKQRSVFAAGAAAKGVDADLATKLFDLVEKFAGYGFNKSHSAAYALVSYQTAWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            +HY + FMAA +S  +D+T+KI + +++  +  GL++  P++N  +Y F     +  +  
Sbjct: 776  SHYPAAFMAAVMSSELDNTDKIVVFIEEC-RRMGLTVRLPDVNEGRYMF-----TVSEAG 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +  ++  R + G F +LFDF  R D + +NR+ + +L+ SGAFD
Sbjct: 830  EIVYGLGAIKGLGEGPVSGLLESREEHGPFHDLFDFCARTDPRKLNRKALEALVRSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKE---YLNYVKVPSWSK 943
                 R++L+A ID AL+ AE+    +    + LF      + ++   Y     +  W+ 
Sbjct: 890  SLGTDRWILLAGIDDALRAAEQNAANRDAGMVDLFGETVQASREQGDPYAELRHIRPWTD 949

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT--YSCTVSGIITELKLKTT 1001
            ++ L  E+  LG  ++ H     E EIR+F+P  L++L+P    +C V+G+I  ++   +
Sbjct: 950  RERLQGERDTLGLYVTGHPIDSCEDEIRRFVPQRLADLRPDNRGNCRVAGLILSMRAMKS 1009

Query: 1002 YRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049
             RG + + V+DD S  +E    +++Y++ + +L +++++I  G++ +D
Sbjct: 1010 ARGSMAVFVLDDRSARLEATAYSEVYQQYRELLVKDQIVIAEGRLSQD 1057


>gi|377578732|ref|ZP_09807708.1| DNA polymerase III subunit alpha [Escherichia hermannii NBRC 105704]
 gi|377540045|dbj|GAB52873.1| DNA polymerase III subunit alpha [Escherichia hermannii NBRC 105704]
          Length = 1160

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1154 (43%), Positives = 736/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGGAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + N I   + + L +L  +N GY  L  L+S+AY          I ++WL +
Sbjct: 64   PIIGADFNVHNPIMGDELNELTVLAADNTGYQNLTLLISRAYQRGYGAAGPFIDLDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            ++  DGLI LSGA  GD+G ++  G   + +     + + F D FY+E+ R  + +    
Sbjct: 124  HR--DGLILLSGARKGDVGKSLLRGNMALVDQCLSFYQQHFADRFYLELIRTGRTDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEEKGLPVVATNDVRFINTDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIA+RCN+ +  G+  LP+FPT  ++   DFL++KSK GL
Sbjct: 242  SEDEMCELFADIPEALANSVEIARRCNVTVRLGEYFLPQFPT-GDMTTEDFLVAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEMGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRRAKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFEEGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   
Sbjct: 776  AHYPAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYANCQPWPEQTV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVITAAGLVIASRVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEQDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI  AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  +
Sbjct: 1070 VMDIADAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   ++V P D L
Sbjct: 1129 RFGATWRVSPSDRL 1142


>gi|260596604|ref|YP_003209175.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
 gi|260215781|emb|CBA28207.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
          Length = 1160

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PA AITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +  ++  +  S + +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIIGADFNMQCDLLGEDFSHITVLAANNTGYQNLTLLISRAYQRGYGAAGPWIDQQWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LSG   GD+G  +  G N +AE     + + FPD +Y+E+ R  +P+    
Sbjct: 124  --LGEGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ ++F++  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEEKGVPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF D+P A++N++EIA+RCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  TEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE    ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEERVQKRPPYDERLEIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEMGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALDMINARRAKQGLEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G+I   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPNDRL 1142


>gi|37524688|ref|NP_928032.1| DNA polymerase III subunit alpha [Photorhabdus luminescens subsp.
            laumondii TTO1]
 gi|36784113|emb|CAE12982.1| DNA polymerase III alpha subunit [Photorhabdus luminescens subsp.
            laumondii TTO1]
          Length = 1160

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 741/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL + + +++  A    PA AITD +NL G+++FY SA+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E+   + + L +L +NN GY  L  L+S+AY +        I+ EWL  
Sbjct: 64   PIIGADFYVESELLGDEHASLTILARNNTGYHNLTLLISEAYQKGYGAIGPTIKQEWLIN 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG  +GD+G  +  G   + +     + + FP  +Y+E+ R  + +    
Sbjct: 124  HK--EGLILLSGGRMGDVGKFLLRGNQAMVDQCLEFYQEHFPGCYYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  +LP+VAT+ + F+   +F AHE+R  I +G  L++ KR K ++ +Q  +
Sbjct: 182  LHAAVALATEKSLPVVATNDVCFIDGEDFDAHEIRVAIHDGYTLADPKRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT   ++  D+LI++S+ GL
Sbjct: 242  SEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDYLINRSQQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  LY DP++   ++  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLYPDPKVRAEKRPEYDERLDIELRVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  MYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDPEGLNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I    TK       +  +PLND  +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRTKKGLEPIDIAAIPLNDAKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L++A T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        + VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEDGAKKLGINGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  L+ +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLIDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R+D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARQKDGYFRELFDLCARVDTKKLNRRVMEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S++ ALK A++  K     Q  +F        +   +Y  +  W ++  L  
Sbjct: 893  PHRAALMSSLEDALKAADQHAKAEATGQTDMFGVLAEAPEEVERSYANISQWPEQIVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      TV G++   K+  T RG 
Sbjct: 953  ERETLGLYLTGHPITRYLKEIERYTSGLRLKDVNPTPRGQVTTVIGLVLASKVIITKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++ +   EK +++L+++ +LI +G+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFSDALEKYRHLLEQDRILIATGQVSFDDFNGGLKMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLSDRQIDDQLLSRLRSALEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D+L
Sbjct: 1132 ATWRVTPTDNL 1142


>gi|24111619|ref|NP_706129.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 301]
 gi|30061741|ref|NP_835912.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
 gi|384541755|ref|YP_005725816.1| DNA polymerase III subunit alpha [Shigella flexneri 2002017]
 gi|417721165|ref|ZP_12370019.1| DNA polymerase III subunit alpha [Shigella flexneri K-304]
 gi|420329284|ref|ZP_14831001.1| DNA polymerase III subunit alpha [Shigella flexneri K-1770]
 gi|420339654|ref|ZP_14841191.1| DNA polymerase III subunit alpha [Shigella flexneri K-404]
 gi|24050388|gb|AAN41836.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 301]
 gi|30039983|gb|AAP15717.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 2457T]
 gi|281599539|gb|ADA72523.1| DNA polymerase III, alpha subunit [Shigella flexneri 2002017]
 gi|333022222|gb|EGK41461.1| DNA polymerase III subunit alpha [Shigella flexneri K-304]
 gi|391260910|gb|EIQ19960.1| DNA polymerase III subunit alpha [Shigella flexneri K-1770]
 gi|391275197|gb|EIQ33990.1| DNA polymerase III subunit alpha [Shigella flexneri K-404]
          Length = 1160

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|215485345|ref|YP_002327776.1| DNA polymerase III subunit alpha [Escherichia coli O127:H6 str.
            E2348/69]
 gi|417284379|ref|ZP_12071674.1| DNA polymerase III, alpha subunit [Escherichia coli 3003]
 gi|417754010|ref|ZP_12402107.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC2B]
 gi|419000353|ref|ZP_13547919.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC1B]
 gi|419005909|ref|ZP_13553367.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC1C]
 gi|419011743|ref|ZP_13559113.1| DNA polymerase III subunit alpha [Escherichia coli DEC1D]
 gi|419022271|ref|ZP_13569520.1| DNA polymerase III subunit alpha [Escherichia coli DEC2A]
 gi|419027164|ref|ZP_13574368.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC2C]
 gi|419032715|ref|ZP_13579816.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC2D]
 gi|419037947|ref|ZP_13585010.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC2E]
 gi|215263417|emb|CAS07737.1| DNA polymerase III, alpha subunit [Escherichia coli O127:H6 str.
            E2348/69]
 gi|377851650|gb|EHU16595.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC1C]
 gi|377854414|gb|EHU19292.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC1B]
 gi|377865277|gb|EHU30069.1| DNA polymerase III subunit alpha [Escherichia coli DEC1D]
 gi|377869354|gb|EHU34071.1| DNA polymerase III subunit alpha [Escherichia coli DEC2A]
 gi|377880940|gb|EHU45506.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC2B]
 gi|377884646|gb|EHU49154.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC2D]
 gi|377886400|gb|EHU50882.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC2C]
 gi|377899455|gb|EHU63803.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC2E]
 gi|386242588|gb|EII84323.1| DNA polymerase III, alpha subunit [Escherichia coli 3003]
          Length = 1160

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|452878629|ref|ZP_21955823.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa VRFPA01]
 gi|452184702|gb|EME11720.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa VRFPA01]
          Length = 1099

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1104 (44%), Positives = 712/1104 (64%), Gaps = 42/1104 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E    G   I  +W+
Sbjct: 61   IKPICGADIWLASREEDGPLSRLSLLAMNARGYRNLTELISRGWSEGQRNGEIIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +GLIALS A  G+IG A+ +G    AE   R W ++FP+ FY+E+QR  + N  
Sbjct: 121  KAAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ ++F+++ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALASRCNAPLVATNDVRFIRQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM +LF D+P A++NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+  +  Y  RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + +K++EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYALLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA L+  M +T+K+  L+++  +   L I+ P++N S++ F   ++ DG   
Sbjct: 777  THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAI   R + G F  LFDF  R+D K IN+R + +LI +GA D
Sbjct: 831  RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +  +   + LF          
Sbjct: 891  RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE E+R+F    + ELKP     TV
Sbjct: 951  VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  + ++ +   +++L+ + L++V G+V +
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILY 1072
            D F   +R+ A+++  +  AR  +
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGW 1094


>gi|422645664|ref|ZP_16708799.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. maculicola
            str. ES4326]
 gi|330959213|gb|EGH59473.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. maculicola
            str. ES4326]
          Length = 1173

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1190 (42%), Positives = 740/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A++  R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADDLLREWLQVFPDRFYIEVQRTNRTNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAQRHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY--KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L   +  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLSVLLPKETTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVHADALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|440289017|ref|YP_007341782.1| DNA-directed DNA polymerase III PolC [Enterobacteriaceae bacterium
            strain FGI 57]
 gi|440048539|gb|AGB79597.1| DNA-directed DNA polymerase III PolC [Enterobacteriaceae bacterium
            strain FGI 57]
          Length = 1160

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA   QPALAITD +N+ G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGQPALAITDFTNMCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI G D  +  ++   + ++L +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIAGADFHVQCDLLGDEMTQLTVLAANNTGYQNLTLLISRAYQRGYGAAGPWIDRDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     + + FPD +++E+ R  +P+    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNMQLVEECVSFYEEHFPDCYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QN++EIAKRCN+ +  G+  LP+FPT  +++  DFL++KS  GL
Sbjct: 242  SEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDFLVAKSHEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPPYDERLDTELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGAFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++  +  +K +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTEALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMMAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|424417134|ref|ZP_17899254.1| DNA polymerase III subunit alpha [Escherichia coli PA32]
 gi|424453258|ref|ZP_17904845.1| DNA polymerase III subunit alpha [Escherichia coli PA33]
 gi|390753603|gb|EIO23280.1| DNA polymerase III subunit alpha [Escherichia coli PA32]
 gi|390758189|gb|EIO27657.1| DNA polymerase III subunit alpha [Escherichia coli PA33]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDHILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|74310804|ref|YP_309223.1| DNA polymerase III subunit alpha [Shigella sonnei Ss046]
 gi|383176791|ref|YP_005454796.1| DNA polymerase III subunit alpha [Shigella sonnei 53G]
 gi|418261653|ref|ZP_12883608.1| DNA polymerase III, &alpha subunit [Shigella sonnei str. Moseley]
 gi|420356759|ref|ZP_14857784.1| DNA polymerase III subunit alpha [Shigella sonnei 3226-85]
 gi|73854281|gb|AAZ86988.1| DNA polymerase III alpha subunit [Shigella sonnei Ss046]
 gi|391290069|gb|EIQ48545.1| DNA polymerase III subunit alpha [Shigella sonnei 3226-85]
 gi|397903485|gb|EJL19782.1| DNA polymerase III, &alpha subunit [Shigella sonnei str. Moseley]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +      +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEAHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|422628292|ref|ZP_16693501.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. pisi str.
            1704B]
 gi|330936801|gb|EGH40958.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. pisi str.
            1704B]
          Length = 1173

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1190 (42%), Positives = 739/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMTELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDVGRV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVGRVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|422587004|ref|ZP_16661675.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            morsprunorum str. M302280]
 gi|330872712|gb|EGH06861.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            morsprunorum str. M302280]
          Length = 1173

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I++  +   PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPAEADELLREWLAVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+ +T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY--KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L      E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A+++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLDIAFIPLDDL 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVHADALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GRDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|365103848|ref|ZP_09333509.1| DNA polymerase III subunit alpha [Citrobacter freundii 4_7_47CFAA]
 gi|363644461|gb|EHL83742.1| DNA polymerase III subunit alpha [Citrobacter freundii 4_7_47CFAA]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 742/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + ++L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVRSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G + + +     + + FP+ +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNCYFLELIRTGRQDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   DFL++KS+ GL
Sbjct: 242  SEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQVEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|260866333|ref|YP_003232735.1| DNA polymerase III subunit alpha DnaE [Escherichia coli O111:H- str.
            11128]
 gi|257762689|dbj|BAI34184.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
            11128]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGVAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|218698604|ref|YP_002406233.1| DNA polymerase III subunit alpha [Escherichia coli IAI39]
 gi|386622595|ref|YP_006142323.1| DNA polymerase III subunit alpha [Escherichia coli O7:K1 str. CE10]
 gi|218368590|emb|CAR16327.1| DNA polymerase III alpha subunit [Escherichia coli IAI39]
 gi|349736333|gb|AEQ11039.1| DNA polymerase III alpha subunit [Escherichia coli O7:K1 str. CE10]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  I L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|331661558|ref|ZP_08362482.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
 gi|331061473|gb|EGI33436.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVMRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARVRLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|261822584|ref|YP_003260690.1| DNA polymerase III subunit alpha [Pectobacterium wasabiae WPP163]
 gi|261606597|gb|ACX89083.1| DNA polymerase III, alpha subunit [Pectobacterium wasabiae WPP163]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 729/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA    PALAITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ ++    + + L +L  NN GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADFYVESDELGDELAHLTVLAMNNEGYQNLTLLISHAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G  +  G    AE     + + FP  +Y+E+ R  +P+    
Sbjct: 122  IEHQEGLILLSGGRRGDVGRFLLRGNQAQAEQCVAFYQEHFPQRYYLELTRTSRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   + +A+   LP+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  IHSAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPEALVNSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTADFLVQCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ DPE+    +L Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EDRLEFLFPDPEVRAARRLEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPADTL 1142


>gi|417126962|ref|ZP_11974516.1| DNA polymerase III, alpha subunit [Escherichia coli 97.0246]
 gi|386145212|gb|EIG91676.1| DNA polymerase III, alpha subunit [Escherichia coli 97.0246]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEASGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|423127500|ref|ZP_17115179.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5250]
 gi|376394539|gb|EHT07189.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5250]
          Length = 1160

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + S+L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSELLGDELSQLTVLATNNVGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G   + +     + + FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNMALVDQCVDFYEQHFPDCYFLELIRTGRQDEEPY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAETRGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPDERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGARKRGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|366159371|ref|ZP_09459233.1| DNA polymerase III subunit alpha [Escherichia sp. TW09308]
 gi|432375109|ref|ZP_19618132.1| DNA polymerase III subunit alpha [Escherichia coli KTE11]
 gi|430892367|gb|ELC14859.1| DNA polymerase III subunit alpha [Escherichia coli KTE11]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAERRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|15799866|ref|NP_285878.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            EDL933]
 gi|15829440|ref|NP_308213.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            Sakai]
 gi|168752166|ref|ZP_02777188.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|168758707|ref|ZP_02783714.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|168764953|ref|ZP_02789960.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|168769951|ref|ZP_02794958.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|168777708|ref|ZP_02802715.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|168782076|ref|ZP_02807083.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|168789293|ref|ZP_02814300.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|168802470|ref|ZP_02827477.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|195939880|ref|ZP_03085262.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            EC4024]
 gi|208806614|ref|ZP_03248951.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208812760|ref|ZP_03254089.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208820436|ref|ZP_03260756.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209398477|ref|YP_002268792.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            EC4115]
 gi|217326041|ref|ZP_03442125.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|254791317|ref|YP_003076154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            TW14359]
 gi|261226938|ref|ZP_05941219.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            FRIK2000]
 gi|261255342|ref|ZP_05947875.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            FRIK966]
 gi|387880742|ref|YP_006311044.1| DNA polymerase III subunit alpha [Escherichia coli Xuzhou21]
 gi|416314032|ref|ZP_11658490.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1044]
 gi|416318934|ref|ZP_11661486.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            EC1212]
 gi|416325823|ref|ZP_11666147.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1125]
 gi|416790023|ref|ZP_11880919.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str.
            493-89]
 gi|416795838|ref|ZP_11883380.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. H
            2687]
 gi|416807867|ref|ZP_11888206.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            3256-97]
 gi|416828353|ref|ZP_11897952.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            LSU-61]
 gi|419048343|ref|ZP_13595268.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3A]
 gi|419054836|ref|ZP_13601697.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3C]
 gi|419060391|ref|ZP_13607179.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3D]
 gi|419073257|ref|ZP_13618833.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3F]
 gi|419084107|ref|ZP_13629526.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4B]
 gi|419101076|ref|ZP_13646257.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4D]
 gi|419101745|ref|ZP_13646914.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4E]
 gi|419112812|ref|ZP_13657850.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4F]
 gi|419118514|ref|ZP_13663502.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC5B]
 gi|420283420|ref|ZP_14785645.1| DNA polymerase III subunit alpha [Escherichia coli TW06591]
 gi|420290207|ref|ZP_14792376.1| DNA polymerase III subunit alpha [Escherichia coli TW11039]
 gi|420295928|ref|ZP_14798026.1| DNA polymerase III subunit alpha [Escherichia coli TW09109]
 gi|420301412|ref|ZP_14803447.1| DNA polymerase III subunit alpha [Escherichia coli TW10119]
 gi|420307513|ref|ZP_14809489.1| DNA polymerase III subunit alpha [Escherichia coli EC1738]
 gi|420312968|ref|ZP_14814883.1| DNA polymerase III subunit alpha [Escherichia coli EC1734]
 gi|421821798|ref|ZP_16257243.1| DNA polymerase III subunit alpha [Escherichia coli FRIK920]
 gi|421828550|ref|ZP_16263882.1| DNA polymerase III subunit alpha [Escherichia coli PA7]
 gi|424074947|ref|ZP_17812339.1| DNA polymerase III subunit alpha [Escherichia coli FDA505]
 gi|424094081|ref|ZP_17829894.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1985]
 gi|424144714|ref|ZP_17876522.1| DNA polymerase III subunit alpha [Escherichia coli PA15]
 gi|424150859|ref|ZP_17882165.1| DNA polymerase III subunit alpha [Escherichia coli PA24]
 gi|424260211|ref|ZP_17893147.1| DNA polymerase III subunit alpha [Escherichia coli PA25]
 gi|424260897|ref|ZP_17893483.1| DNA polymerase III subunit alpha [Escherichia coli PA28]
 gi|424472598|ref|ZP_17922310.1| DNA polymerase III subunit alpha [Escherichia coli PA42]
 gi|424490689|ref|ZP_17939160.1| DNA polymerase III subunit alpha [Escherichia coli TW09195]
 gi|424497809|ref|ZP_17945132.1| DNA polymerase III subunit alpha [Escherichia coli EC4203]
 gi|424504055|ref|ZP_17950880.1| DNA polymerase III subunit alpha [Escherichia coli EC4196]
 gi|424510296|ref|ZP_17956599.1| DNA polymerase III subunit alpha [Escherichia coli TW14313]
 gi|424560730|ref|ZP_18002056.1| DNA polymerase III subunit alpha [Escherichia coli EC4437]
 gi|424566740|ref|ZP_18007706.1| DNA polymerase III subunit alpha [Escherichia coli EC4448]
 gi|425101664|ref|ZP_18504352.1| DNA polymerase III subunit alpha [Escherichia coli 5.2239]
 gi|425123334|ref|ZP_18524949.1| DNA polymerase III subunit alpha [Escherichia coli 8.0586]
 gi|425129359|ref|ZP_18530502.1| DNA polymerase III subunit alpha [Escherichia coli 8.2524]
 gi|425135702|ref|ZP_18536471.1| DNA polymerase III subunit alpha [Escherichia coli 10.0833]
 gi|425183829|ref|ZP_18581489.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1997]
 gi|425215369|ref|ZP_18610723.1| DNA polymerase III subunit alpha [Escherichia coli PA23]
 gi|425221935|ref|ZP_18616830.1| DNA polymerase III subunit alpha [Escherichia coli PA49]
 gi|425228187|ref|ZP_18622619.1| DNA polymerase III subunit alpha [Escherichia coli PA45]
 gi|425234486|ref|ZP_18628480.1| DNA polymerase III subunit alpha [Escherichia coli TT12B]
 gi|425264780|ref|ZP_18656736.1| DNA polymerase III subunit alpha [Escherichia coli 5412]
 gi|425320946|ref|ZP_18709666.1| DNA polymerase III subunit alpha [Escherichia coli EC1737]
 gi|425351809|ref|ZP_18738230.1| DNA polymerase III subunit alpha [Escherichia coli EC1850]
 gi|425357793|ref|ZP_18743807.1| DNA polymerase III subunit alpha [Escherichia coli EC1856]
 gi|425363907|ref|ZP_18749509.1| DNA polymerase III subunit alpha [Escherichia coli EC1862]
 gi|425389839|ref|ZP_18773334.1| DNA polymerase III subunit alpha [Escherichia coli EC1868]
 gi|425408494|ref|ZP_18790683.1| DNA polymerase III subunit alpha [Escherichia coli NE098]
 gi|425414763|ref|ZP_18796434.1| DNA polymerase III subunit alpha [Escherichia coli FRIK523]
 gi|425425912|ref|ZP_18806997.1| DNA polymerase III subunit alpha [Escherichia coli 0.1304]
 gi|428950717|ref|ZP_19022898.1| DNA polymerase III subunit alpha [Escherichia coli 88.1042]
 gi|428956564|ref|ZP_19028312.1| DNA polymerase III subunit alpha [Escherichia coli 89.0511]
 gi|428975413|ref|ZP_19045624.1| DNA polymerase III subunit alpha [Escherichia coli 90.2281]
 gi|428981183|ref|ZP_19050954.1| DNA polymerase III subunit alpha [Escherichia coli 93.0055]
 gi|428993330|ref|ZP_19062274.1| DNA polymerase III subunit alpha [Escherichia coli 94.0618]
 gi|428999419|ref|ZP_19067969.1| DNA polymerase III subunit alpha [Escherichia coli 95.0183]
 gi|429823669|ref|ZP_19355226.1| DNA polymerase III subunit alpha [Escherichia coli 96.0109]
 gi|444928701|ref|ZP_21247873.1| DNA polymerase III subunit alpha [Escherichia coli 99.0814]
 gi|444934100|ref|ZP_21253064.1| DNA polymerase III subunit alpha [Escherichia coli 99.0815]
 gi|444939668|ref|ZP_21258338.1| DNA polymerase III subunit alpha [Escherichia coli 99.0816]
 gi|444956265|ref|ZP_21274289.1| DNA polymerase III subunit alpha [Escherichia coli 99.1753]
 gi|444983664|ref|ZP_21300540.1| DNA polymerase III subunit alpha [Escherichia coli PA11]
 gi|444994218|ref|ZP_21310829.1| DNA polymerase III subunit alpha [Escherichia coli PA13]
 gi|445005196|ref|ZP_21321550.1| DNA polymerase III subunit alpha [Escherichia coli PA47]
 gi|445026853|ref|ZP_21342642.1| DNA polymerase III subunit alpha [Escherichia coli 99.1781]
 gi|445054465|ref|ZP_21369427.1| DNA polymerase III subunit alpha [Escherichia coli 99.0670]
 gi|452969971|ref|ZP_21968198.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            EC4009]
 gi|81848972|sp|Q8X8X5.1|DPO3A_ECO57 RecName: Full=DNA polymerase III subunit alpha
 gi|12512912|gb|AAG54486.1|AE005194_7 DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EDL933]
 gi|13359642|dbj|BAB33609.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            Sakai]
 gi|187767109|gb|EDU30953.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|188013925|gb|EDU52047.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|189000426|gb|EDU69412.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|189354514|gb|EDU72933.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|189361079|gb|EDU79498.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|189365137|gb|EDU83553.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|189371108|gb|EDU89524.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|189375552|gb|EDU93968.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|208726415|gb|EDZ76016.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208734037|gb|EDZ82724.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208740559|gb|EDZ88241.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209159877|gb|ACI37310.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|209745704|gb|ACI71159.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745706|gb|ACI71160.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745708|gb|ACI71161.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745712|gb|ACI71163.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|217322262|gb|EEC30686.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|254590717|gb|ACT70078.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            TW14359]
 gi|320190290|gb|EFW64940.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            EC1212]
 gi|320644760|gb|EFX13804.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str.
            493-89]
 gi|320652916|gb|EFX21154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. H
            2687]
 gi|320658304|gb|EFX26033.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            3256-97 TW 07815]
 gi|320668927|gb|EFX35722.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            LSU-61]
 gi|326339761|gb|EGD63569.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1044]
 gi|326345095|gb|EGD68838.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1125]
 gi|377887364|gb|EHU51841.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3A]
 gi|377915463|gb|EHU79572.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3C]
 gi|377919740|gb|EHU83778.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3D]
 gi|377933832|gb|EHU97676.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3F]
 gi|377935632|gb|EHU99426.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4D]
 gi|377941337|gb|EHV05079.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4B]
 gi|377951885|gb|EHV15493.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4F]
 gi|377955966|gb|EHV19518.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4E]
 gi|377974745|gb|EHV38072.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC5B]
 gi|386794200|gb|AFJ27234.1| DNA polymerase III subunit alpha [Escherichia coli Xuzhou21]
 gi|390654556|gb|EIN32602.1| DNA polymerase III subunit alpha [Escherichia coli FDA505]
 gi|390676389|gb|EIN52495.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1985]
 gi|390711911|gb|EIN84869.1| DNA polymerase III subunit alpha [Escherichia coli PA15]
 gi|390716634|gb|EIN89429.1| DNA polymerase III subunit alpha [Escherichia coli PA25]
 gi|390734897|gb|EIO06326.1| DNA polymerase III subunit alpha [Escherichia coli PA24]
 gi|390738236|gb|EIO09454.1| DNA polymerase III subunit alpha [Escherichia coli PA28]
 gi|390778087|gb|EIO45845.1| DNA polymerase III subunit alpha [Escherichia coli TW06591]
 gi|390781275|gb|EIO48959.1| DNA polymerase III subunit alpha [Escherichia coli PA42]
 gi|390802933|gb|EIO69962.1| DNA polymerase III subunit alpha [Escherichia coli TW11039]
 gi|390812726|gb|EIO79402.1| DNA polymerase III subunit alpha [Escherichia coli TW09109]
 gi|390820005|gb|EIO86311.1| DNA polymerase III subunit alpha [Escherichia coli TW10119]
 gi|390837966|gb|EIP02284.1| DNA polymerase III subunit alpha [Escherichia coli EC4203]
 gi|390841082|gb|EIP05053.1| DNA polymerase III subunit alpha [Escherichia coli EC4196]
 gi|390845011|gb|EIP08697.1| DNA polymerase III subunit alpha [Escherichia coli TW09195]
 gi|390862641|gb|EIP24816.1| DNA polymerase III subunit alpha [Escherichia coli TW14313]
 gi|390904619|gb|EIP63615.1| DNA polymerase III subunit alpha [Escherichia coli EC1738]
 gi|390912448|gb|EIP71100.1| DNA polymerase III subunit alpha [Escherichia coli EC4437]
 gi|390912820|gb|EIP71466.1| DNA polymerase III subunit alpha [Escherichia coli EC1734]
 gi|390917749|gb|EIP76166.1| DNA polymerase III subunit alpha [Escherichia coli EC4448]
 gi|408073676|gb|EKH07985.1| DNA polymerase III subunit alpha [Escherichia coli PA7]
 gi|408077412|gb|EKH11620.1| DNA polymerase III subunit alpha [Escherichia coli FRIK920]
 gi|408117487|gb|EKH48672.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1997]
 gi|408151020|gb|EKH79538.1| DNA polymerase III subunit alpha [Escherichia coli PA23]
 gi|408154539|gb|EKH82870.1| DNA polymerase III subunit alpha [Escherichia coli PA49]
 gi|408159811|gb|EKH87863.1| DNA polymerase III subunit alpha [Escherichia coli PA45]
 gi|408168074|gb|EKH95527.1| DNA polymerase III subunit alpha [Escherichia coli TT12B]
 gi|408193782|gb|EKI19300.1| DNA polymerase III subunit alpha [Escherichia coli 5412]
 gi|408254669|gb|EKI76172.1| DNA polymerase III subunit alpha [Escherichia coli EC1737]
 gi|408286314|gb|EKJ05242.1| DNA polymerase III subunit alpha [Escherichia coli EC1850]
 gi|408289599|gb|EKJ08357.1| DNA polymerase III subunit alpha [Escherichia coli EC1856]
 gi|408301874|gb|EKJ19435.1| DNA polymerase III subunit alpha [Escherichia coli EC1862]
 gi|408319596|gb|EKJ35722.1| DNA polymerase III subunit alpha [Escherichia coli EC1868]
 gi|408338274|gb|EKJ52922.1| DNA polymerase III subunit alpha [Escherichia coli NE098]
 gi|408351212|gb|EKJ65003.1| DNA polymerase III subunit alpha [Escherichia coli FRIK523]
 gi|408353712|gb|EKJ67207.1| DNA polymerase III subunit alpha [Escherichia coli 0.1304]
 gi|408560755|gb|EKK37018.1| DNA polymerase III subunit alpha [Escherichia coli 5.2239]
 gi|408586254|gb|EKK61037.1| DNA polymerase III subunit alpha [Escherichia coli 8.0586]
 gi|408592185|gb|EKK66578.1| DNA polymerase III subunit alpha [Escherichia coli 8.2524]
 gi|408593937|gb|EKK68245.1| DNA polymerase III subunit alpha [Escherichia coli 10.0833]
 gi|427215891|gb|EKV85057.1| DNA polymerase III subunit alpha [Escherichia coli 88.1042]
 gi|427219333|gb|EKV88302.1| DNA polymerase III subunit alpha [Escherichia coli 89.0511]
 gi|427235384|gb|EKW03005.1| DNA polymerase III subunit alpha [Escherichia coli 90.2281]
 gi|427254203|gb|EKW20571.1| DNA polymerase III subunit alpha [Escherichia coli 93.0055]
 gi|427255299|gb|EKW21570.1| DNA polymerase III subunit alpha [Escherichia coli 94.0618]
 gi|427272313|gb|EKW37066.1| DNA polymerase III subunit alpha [Escherichia coli 95.0183]
 gi|429260872|gb|EKY44403.1| DNA polymerase III subunit alpha [Escherichia coli 96.0109]
 gi|444543511|gb|ELV22773.1| DNA polymerase III subunit alpha [Escherichia coli 99.0814]
 gi|444552604|gb|ELV30391.1| DNA polymerase III subunit alpha [Escherichia coli 99.0815]
 gi|444568483|gb|ELV45158.1| DNA polymerase III subunit alpha [Escherichia coli 99.0816]
 gi|444583673|gb|ELV59369.1| DNA polymerase III subunit alpha [Escherichia coli 99.1753]
 gi|444601460|gb|ELV76267.1| DNA polymerase III subunit alpha [Escherichia coli PA11]
 gi|444616191|gb|ELV90361.1| DNA polymerase III subunit alpha [Escherichia coli PA13]
 gi|444634104|gb|ELW07595.1| DNA polymerase III subunit alpha [Escherichia coli PA47]
 gi|444651363|gb|ELW24172.1| DNA polymerase III subunit alpha [Escherichia coli 99.1781]
 gi|444675190|gb|ELW46671.1| DNA polymerase III subunit alpha [Escherichia coli 99.0670]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|416777834|ref|ZP_11875474.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            G5101]
 gi|425258665|ref|ZP_18651070.1| DNA polymerase III subunit alpha [Escherichia coli EC96038]
 gi|445010374|ref|ZP_21326580.1| DNA polymerase III subunit alpha [Escherichia coli PA48]
 gi|320639990|gb|EFX09575.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            G5101]
 gi|408194102|gb|EKI19602.1| DNA polymerase III subunit alpha [Escherichia coli EC96038]
 gi|444633778|gb|ELW07281.1| DNA polymerase III subunit alpha [Escherichia coli PA48]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTVPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|237729490|ref|ZP_04559971.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
 gi|226909219|gb|EEH95137.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 742/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + ++L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVRSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G + + +     + + FP+ +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNCYFLELIRTGRQDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   DFL++KS+ GL
Sbjct: 242  SEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|407695766|ref|YP_006820554.1| DNA polymerase III subunit alpha subfamily protein [Alcanivorax
            dieselolei B5]
 gi|407253104|gb|AFT70211.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            dieselolei B5]
          Length = 1167

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1109 (43%), Positives = 720/1109 (64%), Gaps = 48/1109 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLH++YS++DG++R+ ++I+       PA+A+TD +NLF +IKFY +A N GIK
Sbjct: 4    PRFVHLRLHTDYSLVDGVVRVKELIKTCTAQGMPAVAVTDENNLFALIKFYSNAQNAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D+W+  +    +PS +  LV+N  GY  L  L+S+A+  N    RA IR EWL  
Sbjct: 64   PVMGADLWVQADDPEDEPSYITCLVQNEQGYRNLTLLISRAWQTNQVRERALIRREWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  GD+G  +   + D+A   A  +  +F D +Y+E+QR ++P     
Sbjct: 122  LELNEGLIVLSGARFGDVGKWLLAEKTDLARERATEYKTVFGDRYYLEVQRTQRPGDEDC 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+ +++P+VA++ ++FLK+ +F AHE R CI +G  L + +R +K+++EQ  K
Sbjct: 182  LHASVALAAELDIPVVASNDVRFLKREDFEAHEARVCIHDGNTLDDPRRPRKYSEEQYLK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF D+P A+QN++EIA+RC L +  GK  LP FP P+ + I  +    S+ GL
Sbjct: 242  SAEEMAELFSDLPEALQNSVEIARRCTLDIRLGKNFLPDFPVPEGMTIEQYFEKVSRDGL 301

Query: 303  KKRLLNLYKDPEI--YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            ++RL+ +  DP+   Y   +  Y  RL+FE++ I +M F GYFLIV+DFIQW K + +PV
Sbjct: 302  EERLVKIL-DPQAPDYAERRKIYDDRLKFELDIINQMGFPGYFLIVADFIQWGKEHQVPV 360

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DP++Y+LLFERFLNP R+SMPDFD+DFC E RDRVI YV
Sbjct: 361  GPGRGSGAGSLVAYALKITDLDPIAYDLLFERFLNPERVSMPDFDVDFCMEKRDRVINYV 420

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D+YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP  PG  +TLS A++
Sbjct: 421  ADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGMADRLSKMIPGTPG--MTLSKALE 478

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
            +E  L + ++++     E V +++E+A ++EG+ RNVG HAGGV+IAP KL +F PL+  
Sbjct: 479  QEETLRDFLEDDGNPDKEAVNEIMEMAFKLEGLTRNVGKHAGGVVIAPGKLTDFAPLHCD 538

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNK 590
            E    +++QYDKDD+E+ GL+KFDFLGL TL+I+D   + +K +N +          + +
Sbjct: 539  EHGENLVTQYDKDDVEQAGLVKFDFLGLKTLTIID---WAMKAVNVRRQREGDGPLEIER 595

Query: 591  LPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LI 648
            +PL+D  +++LLK+ +T AVFQLESQGMK ++K+ KPD FE+IIAL++LYRPGP++  ++
Sbjct: 596  IPLDDSPSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRPGPLESGMV 655

Query: 649  KNFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLL 702
             NF  RKHG E   YPDP+      + +L  TYG+++YQEQVMQIAQ+L GY+LG AD+L
Sbjct: 656  DNFINRKHGREPLAYPDPQYQHEWLESILKPTYGVILYQEQVMQIAQVLAGYTLGGADML 715

Query: 703  RRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLS 762
            RRA+GKKK  EM + R+ F++GA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL++
Sbjct: 716  RRAMGKKKPEEMAKQREIFESGAKEKGVDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVA 775

Query: 763  YYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPII 822
            Y TA+LK HY + FMAA +S  M +T+K+   + D   + GL +LPP++N   Y F    
Sbjct: 776  YQTAWLKAHYPAEFMAAVISADMQNTDKVVTFI-DECHSMGLKVLPPDVNSCGYRFTVNP 834

Query: 823  ESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSL 881
            E D     I YGLGAIKG G+  IEAIV+ R     F +LFDF +RID K INRR + +L
Sbjct: 835  EGD-----IIYGLGAIKGLGEGPIEAIVSARGDTDGFDDLFDFCRRIDLKKINRRSLEAL 889

Query: 882  INSGAFDCFNEKRYM-----LVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLN 934
            + +GA D     R+      L+A++  A+  AE+  +        LF +         + 
Sbjct: 890  VRAGALDKLGPNRHFRDRATLLATLPDAIAAAEQDARNEEAGMTDLFGSMQTAETP-VVE 948

Query: 935  YVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSG 991
            +     W+ +  L  E+  LG  L+ H    +E E+RQF+    + L+PT    + TV+G
Sbjct: 949  WKPAREWNDELRLNGERDTLGLFLTGHPIDQFEHEVRQFVSARFNALQPTAKGEAATVAG 1008

Query: 992  IITELKLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049
            ++  L++  + R   ++  + +DD +  +EV +  + + +    ++++ LL+V G V  D
Sbjct: 1009 LVVALRITRSKRSGERMAFVTLDDKTGRLEVSVFGKTFAQFGERIQKDILLVVRGGVRND 1068

Query: 1050 RFLKNIRINAEKIFDINVARILYGKKFSV 1078
             +     + A+++ D+  AR ++ ++  V
Sbjct: 1069 DYSGGFNLVADEVMDMRQAREVFARRLCV 1097


>gi|386617690|ref|YP_006137270.1| DNA polymerase III subunit alpha [Escherichia coli NA114]
 gi|387828252|ref|YP_003348189.1| DNA polymerase III alpha subunit [Escherichia coli SE15]
 gi|432420308|ref|ZP_19662867.1| DNA polymerase III subunit alpha [Escherichia coli KTE178]
 gi|432498484|ref|ZP_19740265.1| DNA polymerase III subunit alpha [Escherichia coli KTE216]
 gi|432557215|ref|ZP_19793909.1| DNA polymerase III subunit alpha [Escherichia coli KTE49]
 gi|432692872|ref|ZP_19928092.1| DNA polymerase III subunit alpha [Escherichia coli KTE162]
 gi|432709030|ref|ZP_19944099.1| DNA polymerase III subunit alpha [Escherichia coli KTE6]
 gi|432917172|ref|ZP_20121843.1| DNA polymerase III subunit alpha [Escherichia coli KTE173]
 gi|432924467|ref|ZP_20126754.1| DNA polymerase III subunit alpha [Escherichia coli KTE175]
 gi|432979572|ref|ZP_20168360.1| DNA polymerase III subunit alpha [Escherichia coli KTE211]
 gi|433095065|ref|ZP_20281291.1| DNA polymerase III subunit alpha [Escherichia coli KTE139]
 gi|433104368|ref|ZP_20290393.1| DNA polymerase III subunit alpha [Escherichia coli KTE148]
 gi|281177409|dbj|BAI53739.1| DNA polymerase III alpha subunit [Escherichia coli SE15]
 gi|333968191|gb|AEG34996.1| DNA polymerase III alpha subunit [Escherichia coli NA114]
 gi|430947896|gb|ELC67584.1| DNA polymerase III subunit alpha [Escherichia coli KTE178]
 gi|431032929|gb|ELD45635.1| DNA polymerase III subunit alpha [Escherichia coli KTE216]
 gi|431094833|gb|ELE00462.1| DNA polymerase III subunit alpha [Escherichia coli KTE49]
 gi|431237892|gb|ELF32874.1| DNA polymerase III subunit alpha [Escherichia coli KTE162]
 gi|431252751|gb|ELF46265.1| DNA polymerase III subunit alpha [Escherichia coli KTE6]
 gi|431448457|gb|ELH29174.1| DNA polymerase III subunit alpha [Escherichia coli KTE173]
 gi|431450108|gb|ELH30600.1| DNA polymerase III subunit alpha [Escherichia coli KTE175]
 gi|431498522|gb|ELH77708.1| DNA polymerase III subunit alpha [Escherichia coli KTE211]
 gi|431620803|gb|ELI89630.1| DNA polymerase III subunit alpha [Escherichia coli KTE139]
 gi|431634812|gb|ELJ03033.1| DNA polymerase III subunit alpha [Escherichia coli KTE148]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A +  LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|385872898|gb|AFI91418.1| DNA polymerase III, alpha subunit [Pectobacterium sp. SCC3193]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 729/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA    PALAITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ ++    + + L +L  NN GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADFYVESDELGDELAHLTVLAMNNEGYQNLTLLISHAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G  +  G    AE     + + FP  +Y+E+ R  +P+    
Sbjct: 122  IEHQEGLILLSGGRRGDVGRFLLRGNQAQAEQCVAFYQEHFPQRYYLELTRTSRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   + +A+   LP+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  IHSAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPEALVNSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTADFLVQCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ DPE+    +L Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EDRLEFLFPDPEVRAARRLEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPADAL 1142


>gi|16128177|ref|NP_414726.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MG1655]
 gi|157158983|ref|YP_001461353.1| DNA polymerase III subunit alpha [Escherichia coli E24377A]
 gi|170079820|ref|YP_001729140.1| DNA polymerase III subunit alpha [Escherichia coli str. K-12 substr.
            DH10B]
 gi|188493055|ref|ZP_03000325.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
 gi|193063148|ref|ZP_03044239.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
 gi|209917374|ref|YP_002291458.1| DNA polymerase III subunit alpha [Escherichia coli SE11]
 gi|218552765|ref|YP_002385678.1| DNA polymerase III subunit alpha [Escherichia coli IAI1]
 gi|218693649|ref|YP_002401316.1| DNA polymerase III subunit alpha [Escherichia coli 55989]
 gi|238899582|ref|YP_002925378.1| DNA polymerase III subunit alpha [Escherichia coli BW2952]
 gi|260842416|ref|YP_003220194.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
            12009]
 gi|293418069|ref|ZP_06660691.1| DNA polymerase III subunit alpha [Escherichia coli B185]
 gi|307311368|ref|ZP_07591010.1| DNA polymerase III, alpha subunit [Escherichia coli W]
 gi|331640638|ref|ZP_08341786.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|331666425|ref|ZP_08367306.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
 gi|331680763|ref|ZP_08381422.1| DNA polymerase III subunit alpha [Escherichia coli H591]
 gi|332282858|ref|ZP_08395271.1| DNA polymerase subunit III alpha [Shigella sp. D9]
 gi|378714478|ref|YP_005279371.1| DNA polymerase III subunit alpha [Escherichia coli KO11FL]
 gi|386279227|ref|ZP_10056915.1| DNA polymerase III subunit alpha [Escherichia sp. 4_1_40B]
 gi|386596924|ref|YP_006093324.1| DNA polymerase III subunit alpha [Escherichia coli DH1]
 gi|386607485|ref|YP_006122971.1| DNA polymerase III subunit alpha [Escherichia coli W]
 gi|386612348|ref|YP_006132014.1| DNA polymerase III subunit alpha DnaE [Escherichia coli UMNK88]
 gi|386698682|ref|YP_006162519.1| DNA polymerase III subunit alpha [Escherichia coli KO11FL]
 gi|386707912|ref|YP_006171633.1| DNA polymerase III subunit alpha [Escherichia coli W]
 gi|387619951|ref|YP_006127578.1| DNA polymerase III subunit alpha [Escherichia coli DH1]
 gi|388476302|ref|YP_488486.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            W3110]
 gi|407467638|ref|YP_006785920.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            2009EL-2071]
 gi|407483645|ref|YP_006780794.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            2011C-3493]
 gi|410484185|ref|YP_006771731.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            2009EL-2050]
 gi|416342909|ref|ZP_11676913.1| DNA polymerase III alpha subunit [Escherichia coli EC4100B]
 gi|417133769|ref|ZP_11978554.1| DNA polymerase III, alpha subunit [Escherichia coli 5.0588]
 gi|417142723|ref|ZP_11985104.1| DNA polymerase III, alpha subunit [Escherichia coli 97.0259]
 gi|417153171|ref|ZP_11991962.1| DNA polymerase III, alpha subunit [Escherichia coli 96.0497]
 gi|417176835|ref|ZP_12006631.1| DNA polymerase III, alpha subunit [Escherichia coli 3.2608]
 gi|417181915|ref|ZP_12008751.1| DNA polymerase III, alpha subunit [Escherichia coli 93.0624]
 gi|417225411|ref|ZP_12028702.1| DNA polymerase III, alpha subunit [Escherichia coli 96.154]
 gi|417252424|ref|ZP_12044183.1| DNA polymerase III, alpha subunit [Escherichia coli 4.0967]
 gi|417260689|ref|ZP_12048187.1| DNA polymerase III, alpha subunit [Escherichia coli 2.3916]
 gi|417273489|ref|ZP_12060834.1| DNA polymerase III, alpha subunit [Escherichia coli 2.4168]
 gi|417279514|ref|ZP_12066820.1| DNA polymerase III, alpha subunit [Escherichia coli 3.2303]
 gi|417293169|ref|ZP_12080449.1| DNA polymerase III, alpha subunit [Escherichia coli B41]
 gi|417579403|ref|ZP_12230229.1| DNA polymerase III subunit alpha [Escherichia coli STEC_B2F1]
 gi|417600447|ref|ZP_12251034.1| DNA polymerase III subunit alpha [Escherichia coli STEC_94C]
 gi|417611196|ref|ZP_12261672.1| DNA polymerase III subunit alpha [Escherichia coli STEC_EH250]
 gi|417616525|ref|ZP_12266964.1| DNA polymerase III subunit alpha [Escherichia coli G58-1]
 gi|417632664|ref|ZP_12282887.1| DNA polymerase III subunit alpha [Escherichia coli STEC_S1191]
 gi|417637452|ref|ZP_12287633.1| DNA polymerase III subunit alpha [Escherichia coli TX1999]
 gi|417665254|ref|ZP_12314823.1| DNA polymerase III subunit alpha [Escherichia coli STEC_O31]
 gi|417803524|ref|ZP_12450564.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            LB226692]
 gi|417864294|ref|ZP_12509340.1| hypothetical protein C22711_1227 [Escherichia coli O104:H4 str.
            C227-11]
 gi|418301073|ref|ZP_12912867.1| DNA polymerase III subunit alpha [Escherichia coli UMNF18]
 gi|419140555|ref|ZP_13685314.1| DNA polymerase III subunit alpha [Escherichia coli DEC6A]
 gi|419162448|ref|ZP_13706929.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC6E]
 gi|419168155|ref|ZP_13712556.1| DNA polymerase III subunit alpha [Escherichia coli DEC7A]
 gi|419173543|ref|ZP_13717405.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC7B]
 gi|419179205|ref|ZP_13722832.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC7C]
 gi|419184665|ref|ZP_13728191.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC7D]
 gi|419276289|ref|ZP_13818561.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10E]
 gi|419287696|ref|ZP_13829815.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC11A]
 gi|419292994|ref|ZP_13835056.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC11B]
 gi|419298375|ref|ZP_13840400.1| DNA polymerase III subunit alpha [Escherichia coli DEC11C]
 gi|419315029|ref|ZP_13856862.1| DNA polymerase III subunit alpha [Escherichia coli DEC12A]
 gi|419320827|ref|ZP_13862572.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC12B]
 gi|419327028|ref|ZP_13868665.1| DNA polymerase III subunit alpha [Escherichia coli DEC12C]
 gi|419338198|ref|ZP_13879689.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC12E]
 gi|419368464|ref|ZP_13909598.1| DNA polymerase III subunit alpha [Escherichia coli DEC14A]
 gi|419373622|ref|ZP_13914684.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC14B]
 gi|419384305|ref|ZP_13925213.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC14D]
 gi|419389600|ref|ZP_13930443.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15A]
 gi|419400164|ref|ZP_13940899.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15C]
 gi|419410495|ref|ZP_13951174.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15D]
 gi|419812912|ref|ZP_14337772.1| DNA polymerase III subunit alpha [Escherichia coli O32:H37 str. P4]
 gi|419865192|ref|ZP_14387581.1| DNA polymerase III subunit alpha [Escherichia coli O103:H25 str.
            CVM9340]
 gi|419870139|ref|ZP_14392276.1| DNA polymerase III subunit alpha [Escherichia coli O103:H2 str.
            CVM9450]
 gi|419921780|ref|ZP_14439816.1| DNA polymerase III subunit alpha [Escherichia coli 541-15]
 gi|419937842|ref|ZP_14454688.1| DNA polymerase III subunit alpha [Escherichia coli 75]
 gi|419951504|ref|ZP_14467695.1| DNA polymerase III subunit alpha [Escherichia coli CUMT8]
 gi|420383824|ref|ZP_14883216.1| DNA polymerase III subunit alpha [Escherichia coli EPECa12]
 gi|421775112|ref|ZP_16211722.1| DNA polymerase III, alpha subunit [Escherichia coli AD30]
 gi|422333345|ref|ZP_16414356.1| DNA polymerase III subunit alpha [Escherichia coli 4_1_47FAA]
 gi|422761861|ref|ZP_16815619.1| DNA polymerase III [Escherichia coli E1167]
 gi|422772893|ref|ZP_16826579.1| DNA polymerase III [Escherichia coli E482]
 gi|422776824|ref|ZP_16830478.1| DNA polymerase III [Escherichia coli H120]
 gi|422792835|ref|ZP_16845534.1| DNA polymerase III [Escherichia coli TA007]
 gi|422816200|ref|ZP_16864415.1| DNA polymerase III subunit alpha [Escherichia coli M919]
 gi|422990887|ref|ZP_16981658.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            C227-11]
 gi|422992827|ref|ZP_16983591.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            C236-11]
 gi|422998036|ref|ZP_16988792.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            09-7901]
 gi|423006520|ref|ZP_16997264.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            04-8351]
 gi|423008142|ref|ZP_16998880.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-3677]
 gi|423022328|ref|ZP_17013031.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4404]
 gi|423027483|ref|ZP_17018176.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4522]
 gi|423033320|ref|ZP_17024004.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4623]
 gi|423036186|ref|ZP_17026860.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C1]
 gi|423041306|ref|ZP_17031973.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C2]
 gi|423047992|ref|ZP_17038649.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C3]
 gi|423056530|ref|ZP_17045335.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C4]
 gi|423058541|ref|ZP_17047337.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C5]
 gi|423700966|ref|ZP_17675425.1| DNA polymerase III subunit alpha [Escherichia coli H730]
 gi|425118257|ref|ZP_18520011.1| DNA polymerase III subunit alpha [Escherichia coli 8.0569]
 gi|427803257|ref|ZP_18970324.1| DNA polymerase III [Escherichia coli chi7122]
 gi|427807862|ref|ZP_18974927.1| DNA polymerase III, alpha subunit [Escherichia coli]
 gi|429722385|ref|ZP_19257284.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-9450]
 gi|429774463|ref|ZP_19306467.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02030]
 gi|429779723|ref|ZP_19311679.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02033-1]
 gi|429783778|ref|ZP_19315692.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02092]
 gi|429789116|ref|ZP_19320992.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02093]
 gi|429795346|ref|ZP_19327173.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02281]
 gi|429801272|ref|ZP_19333051.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02318]
 gi|429804904|ref|ZP_19336652.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02913]
 gi|429809715|ref|ZP_19341418.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-03439]
 gi|429815475|ref|ZP_19347135.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-04080]
 gi|429820686|ref|ZP_19352301.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-03943]
 gi|429906737|ref|ZP_19372707.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-9990]
 gi|429910932|ref|ZP_19376889.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-9941]
 gi|429916772|ref|ZP_19382713.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-4984]
 gi|429921810|ref|ZP_19387732.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-5604]
 gi|429927627|ref|ZP_19393534.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-4986]
 gi|429931560|ref|ZP_19397456.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-4987]
 gi|429938103|ref|ZP_19403984.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-4988]
 gi|429938818|ref|ZP_19404692.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-5603]
 gi|429946459|ref|ZP_19412315.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-6006]
 gi|429949107|ref|ZP_19414955.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec12-0465]
 gi|429957374|ref|ZP_19423203.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec12-0466]
 gi|432368176|ref|ZP_19611284.1| DNA polymerase III subunit alpha [Escherichia coli KTE10]
 gi|432379800|ref|ZP_19622775.1| DNA polymerase III subunit alpha [Escherichia coli KTE12]
 gi|432415136|ref|ZP_19657771.1| DNA polymerase III subunit alpha [Escherichia coli KTE44]
 gi|432483826|ref|ZP_19725755.1| DNA polymerase III subunit alpha [Escherichia coli KTE212]
 gi|432562105|ref|ZP_19798738.1| DNA polymerase III subunit alpha [Escherichia coli KTE51]
 gi|432578897|ref|ZP_19815333.1| DNA polymerase III subunit alpha [Escherichia coli KTE56]
 gi|432625743|ref|ZP_19861732.1| DNA polymerase III subunit alpha [Escherichia coli KTE77]
 gi|432635503|ref|ZP_19871393.1| DNA polymerase III subunit alpha [Escherichia coli KTE81]
 gi|432659451|ref|ZP_19895116.1| DNA polymerase III subunit alpha [Escherichia coli KTE111]
 gi|432669006|ref|ZP_19904561.1| DNA polymerase III subunit alpha [Escherichia coli KTE119]
 gi|432684064|ref|ZP_19919387.1| DNA polymerase III subunit alpha [Escherichia coli KTE156]
 gi|432689968|ref|ZP_19925222.1| DNA polymerase III subunit alpha [Escherichia coli KTE161]
 gi|432702727|ref|ZP_19937859.1| DNA polymerase III subunit alpha [Escherichia coli KTE171]
 gi|432735648|ref|ZP_19970440.1| DNA polymerase III subunit alpha [Escherichia coli KTE42]
 gi|432753010|ref|ZP_19987581.1| DNA polymerase III subunit alpha [Escherichia coli KTE29]
 gi|432830159|ref|ZP_20063769.1| DNA polymerase III subunit alpha [Escherichia coli KTE135]
 gi|432833285|ref|ZP_20066834.1| DNA polymerase III subunit alpha [Escherichia coli KTE136]
 gi|432872727|ref|ZP_20092543.1| DNA polymerase III subunit alpha [Escherichia coli KTE147]
 gi|432879440|ref|ZP_20096467.1| DNA polymerase III subunit alpha [Escherichia coli KTE154]
 gi|432952841|ref|ZP_20145584.1| DNA polymerase III subunit alpha [Escherichia coli KTE197]
 gi|432966325|ref|ZP_20155245.1| DNA polymerase III subunit alpha [Escherichia coli KTE203]
 gi|433046234|ref|ZP_20233678.1| DNA polymerase III subunit alpha [Escherichia coli KTE120]
 gi|433090531|ref|ZP_20276844.1| DNA polymerase III subunit alpha [Escherichia coli KTE138]
 gi|433128471|ref|ZP_20313959.1| DNA polymerase III subunit alpha [Escherichia coli KTE163]
 gi|433133372|ref|ZP_20318758.1| DNA polymerase III subunit alpha [Escherichia coli KTE166]
 gi|433171950|ref|ZP_20356520.1| DNA polymerase III subunit alpha [Escherichia coli KTE232]
 gi|442590825|ref|ZP_21009580.1| DNA polymerase III alpha subunit [Escherichia coli O10:K5(L):H4 str.
            ATCC 23506]
 gi|443616195|ref|YP_007380051.1| DNA polymerase III subunit alpha [Escherichia coli APEC O78]
 gi|450238452|ref|ZP_21898880.1| DNA polymerase III subunit alpha [Escherichia coli S17]
 gi|118794|sp|P10443.1|DPO3A_ECOLI RecName: Full=DNA polymerase III subunit alpha
 gi|146663|gb|AAC36920.1| DNA polymerase III holoenzyme, alpha subunit [Escherichia coli]
 gi|1552761|gb|AAB08613.1| DNA polymerase III alpha chain [Escherichia coli]
 gi|1786381|gb|AAC73295.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MG1655]
 gi|4902925|dbj|BAA77859.1| DNA polymerase III alpha subunit [Escherichia coli str. K12 substr.
            W3110]
 gi|157081013|gb|ABV20721.1| DNA polymerase III, alpha subunit [Escherichia coli E24377A]
 gi|169887655|gb|ACB01362.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            DH10B]
 gi|188488254|gb|EDU63357.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
 gi|192931056|gb|EDV83659.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
 gi|209910633|dbj|BAG75707.1| DNA polymerase III alpha subunit [Escherichia coli SE11]
 gi|218350381|emb|CAU96064.1| DNA polymerase III alpha subunit [Escherichia coli 55989]
 gi|218359533|emb|CAQ97071.1| DNA polymerase III alpha subunit [Escherichia coli IAI1]
 gi|238860829|gb|ACR62827.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
 gi|257757563|dbj|BAI29060.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
            12009]
 gi|260450613|gb|ACX41035.1| DNA polymerase III, alpha subunit [Escherichia coli DH1]
 gi|291430787|gb|EFF03785.1| DNA polymerase III subunit alpha [Escherichia coli B185]
 gi|306908347|gb|EFN38845.1| DNA polymerase III, alpha subunit [Escherichia coli W]
 gi|315059402|gb|ADT73729.1| DNA polymerase III alpha subunit [Escherichia coli W]
 gi|315134874|dbj|BAJ42033.1| DNA polymerase III subunit alpha [Escherichia coli DH1]
 gi|320200290|gb|EFW74876.1| DNA polymerase III alpha subunit [Escherichia coli EC4100B]
 gi|323380039|gb|ADX52307.1| DNA polymerase III, alpha subunit [Escherichia coli KO11FL]
 gi|323939940|gb|EGB36138.1| DNA polymerase III [Escherichia coli E482]
 gi|323945661|gb|EGB41710.1| DNA polymerase III [Escherichia coli H120]
 gi|323970663|gb|EGB65919.1| DNA polymerase III [Escherichia coli TA007]
 gi|324118304|gb|EGC12199.1| DNA polymerase III [Escherichia coli E1167]
 gi|331040384|gb|EGI12591.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|331066636|gb|EGI38513.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
 gi|331072226|gb|EGI43562.1| DNA polymerase III subunit alpha [Escherichia coli H591]
 gi|332105210|gb|EGJ08556.1| DNA polymerase subunit III alpha [Shigella sp. D9]
 gi|332341517|gb|AEE54851.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli UMNK88]
 gi|339413171|gb|AEJ54843.1| DNA polymerase III subunit alpha [Escherichia coli UMNF18]
 gi|340742070|gb|EGR76211.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            LB226692]
 gi|341917583|gb|EGT67198.1| hypothetical protein C22711_1227 [Escherichia coli O104:H4 str.
            C227-11]
 gi|345344701|gb|EGW77066.1| DNA polymerase III subunit alpha [Escherichia coli STEC_B2F1]
 gi|345354605|gb|EGW86826.1| DNA polymerase III subunit alpha [Escherichia coli STEC_94C]
 gi|345367170|gb|EGW99257.1| DNA polymerase III subunit alpha [Escherichia coli STEC_EH250]
 gi|345383659|gb|EGX13532.1| DNA polymerase III subunit alpha [Escherichia coli G58-1]
 gi|345391461|gb|EGX21251.1| DNA polymerase III subunit alpha [Escherichia coli STEC_S1191]
 gi|345395772|gb|EGX25510.1| DNA polymerase III subunit alpha [Escherichia coli TX1999]
 gi|354859386|gb|EHF19834.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            04-8351]
 gi|354859873|gb|EHF20320.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            C227-11]
 gi|354866570|gb|EHF26993.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            C236-11]
 gi|354876904|gb|EHF37264.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            09-7901]
 gi|354881913|gb|EHF42241.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4404]
 gi|354885011|gb|EHF45322.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-3677]
 gi|354886458|gb|EHF46745.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4522]
 gi|354889974|gb|EHF50221.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4623]
 gi|354902174|gb|EHF62296.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C1]
 gi|354905500|gb|EHF65583.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C2]
 gi|354908007|gb|EHF68063.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C3]
 gi|354910278|gb|EHF70306.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C4]
 gi|354918479|gb|EHF78435.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-4632 C5]
 gi|359331042|dbj|BAL37489.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MDS42]
 gi|373245860|gb|EHP65325.1| DNA polymerase III subunit alpha [Escherichia coli 4_1_47FAA]
 gi|378000738|gb|EHV63804.1| DNA polymerase III subunit alpha [Escherichia coli DEC6A]
 gi|378017596|gb|EHV80468.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC6E]
 gi|378019437|gb|EHV82268.1| DNA polymerase III subunit alpha [Escherichia coli DEC7A]
 gi|378028752|gb|EHV91369.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC7C]
 gi|378034292|gb|EHV96858.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC7D]
 gi|378039034|gb|EHW01539.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC7B]
 gi|378134850|gb|EHW96165.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10E]
 gi|378136663|gb|EHW97954.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC11A]
 gi|378147766|gb|EHX08912.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC11B]
 gi|378158172|gb|EHX19202.1| DNA polymerase III subunit alpha [Escherichia coli DEC11C]
 gi|378176030|gb|EHX36838.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC12B]
 gi|378176526|gb|EHX37332.1| DNA polymerase III subunit alpha [Escherichia coli DEC12A]
 gi|378177566|gb|EHX38357.1| DNA polymerase III subunit alpha [Escherichia coli DEC12C]
 gi|378193947|gb|EHX54470.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC12E]
 gi|378223406|gb|EHX83630.1| DNA polymerase III subunit alpha [Escherichia coli DEC14A]
 gi|378227584|gb|EHX87754.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC14B]
 gi|378237836|gb|EHX97854.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC14D]
 gi|378246207|gb|EHY06139.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15A]
 gi|378249960|gb|EHY09869.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15D]
 gi|378252397|gb|EHY12288.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15C]
 gi|383390209|gb|AFH15167.1| DNA polymerase III subunit alpha [Escherichia coli KO11FL]
 gi|383403604|gb|AFH09847.1| DNA polymerase III subunit alpha [Escherichia coli W]
 gi|385154211|gb|EIF16227.1| DNA polymerase III subunit alpha [Escherichia coli O32:H37 str. P4]
 gi|385540599|gb|EIF87420.1| DNA polymerase III subunit alpha [Escherichia coli M919]
 gi|385713666|gb|EIG50597.1| DNA polymerase III subunit alpha [Escherichia coli H730]
 gi|386123816|gb|EIG72405.1| DNA polymerase III subunit alpha [Escherichia sp. 4_1_40B]
 gi|386151623|gb|EIH02912.1| DNA polymerase III, alpha subunit [Escherichia coli 5.0588]
 gi|386154748|gb|EIH11106.1| DNA polymerase III, alpha subunit [Escherichia coli 97.0259]
 gi|386169895|gb|EIH36403.1| DNA polymerase III, alpha subunit [Escherichia coli 96.0497]
 gi|386179527|gb|EIH57006.1| DNA polymerase III, alpha subunit [Escherichia coli 3.2608]
 gi|386184904|gb|EIH67640.1| DNA polymerase III, alpha subunit [Escherichia coli 93.0624]
 gi|386200459|gb|EIH99450.1| DNA polymerase III, alpha subunit [Escherichia coli 96.154]
 gi|386216355|gb|EII32844.1| DNA polymerase III, alpha subunit [Escherichia coli 4.0967]
 gi|386225847|gb|EII48172.1| DNA polymerase III, alpha subunit [Escherichia coli 2.3916]
 gi|386233671|gb|EII65651.1| DNA polymerase III, alpha subunit [Escherichia coli 2.4168]
 gi|386237613|gb|EII74557.1| DNA polymerase III, alpha subunit [Escherichia coli 3.2303]
 gi|386252741|gb|EIJ02432.1| DNA polymerase III, alpha subunit [Escherichia coli B41]
 gi|388338086|gb|EIL04563.1| DNA polymerase III subunit alpha [Escherichia coli O103:H25 str.
            CVM9340]
 gi|388340295|gb|EIL06542.1| DNA polymerase III subunit alpha [Escherichia coli O103:H2 str.
            CVM9450]
 gi|388397189|gb|EIL58218.1| DNA polymerase III subunit alpha [Escherichia coli 541-15]
 gi|388411381|gb|EIL71562.1| DNA polymerase III subunit alpha [Escherichia coli 75]
 gi|388414465|gb|EIL74422.1| DNA polymerase III subunit alpha [Escherichia coli CUMT8]
 gi|391310173|gb|EIQ67829.1| DNA polymerase III subunit alpha [Escherichia coli EPECa12]
 gi|397787189|gb|EJK98018.1| DNA polymerase III subunit alpha [Escherichia coli STEC_O31]
 gi|406779347|gb|AFS58771.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            2009EL-2050]
 gi|407055942|gb|AFS75993.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            2011C-3493]
 gi|407063673|gb|AFS84720.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            2009EL-2071]
 gi|408459544|gb|EKJ83325.1| DNA polymerase III, alpha subunit [Escherichia coli AD30]
 gi|408574473|gb|EKK50243.1| DNA polymerase III subunit alpha [Escherichia coli 8.0569]
 gi|412961439|emb|CCK45344.1| DNA polymerase III [Escherichia coli chi7122]
 gi|412968041|emb|CCJ42654.1| DNA polymerase III, alpha subunit [Escherichia coli]
 gi|429352513|gb|EKY89228.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02030]
 gi|429353569|gb|EKY90277.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02033-1]
 gi|429354067|gb|EKY90772.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02092]
 gi|429367557|gb|EKZ04151.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02093]
 gi|429368709|gb|EKZ05295.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02281]
 gi|429370935|gb|EKZ07498.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02318]
 gi|429383309|gb|EKZ19770.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-02913]
 gi|429386158|gb|EKZ22608.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-03439]
 gi|429387071|gb|EKZ23516.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-03943]
 gi|429398331|gb|EKZ34674.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            11-04080]
 gi|429400047|gb|EKZ36365.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-9450]
 gi|429400381|gb|EKZ36698.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-9990]
 gi|429411472|gb|EKZ47682.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-4984]
 gi|429413044|gb|EKZ49234.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-4986]
 gi|429420096|gb|EKZ56230.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-4987]
 gi|429423958|gb|EKZ60065.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-4988]
 gi|429430115|gb|EKZ66182.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-5603]
 gi|429436057|gb|EKZ72074.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-5604]
 gi|429443241|gb|EKZ79194.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec12-0465]
 gi|429445663|gb|EKZ81604.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-6006]
 gi|429452132|gb|EKZ88019.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec12-0466]
 gi|429456983|gb|EKZ92826.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            Ec11-9941]
 gi|430889837|gb|ELC12497.1| DNA polymerase III subunit alpha [Escherichia coli KTE10]
 gi|430894409|gb|ELC16698.1| DNA polymerase III subunit alpha [Escherichia coli KTE12]
 gi|430944561|gb|ELC64654.1| DNA polymerase III subunit alpha [Escherichia coli KTE44]
 gi|431020051|gb|ELD33442.1| DNA polymerase III subunit alpha [Escherichia coli KTE212]
 gi|431101068|gb|ELE06037.1| DNA polymerase III subunit alpha [Escherichia coli KTE51]
 gi|431109853|gb|ELE13803.1| DNA polymerase III subunit alpha [Escherichia coli KTE56]
 gi|431166095|gb|ELE66422.1| DNA polymerase III subunit alpha [Escherichia coli KTE77]
 gi|431174769|gb|ELE74805.1| DNA polymerase III subunit alpha [Escherichia coli KTE81]
 gi|431204273|gb|ELF02846.1| DNA polymerase III subunit alpha [Escherichia coli KTE111]
 gi|431214711|gb|ELF12465.1| DNA polymerase III subunit alpha [Escherichia coli KTE119]
 gi|431225982|gb|ELF23168.1| DNA polymerase III subunit alpha [Escherichia coli KTE156]
 gi|431232641|gb|ELF28307.1| DNA polymerase III subunit alpha [Escherichia coli KTE161]
 gi|431248128|gb|ELF42337.1| DNA polymerase III subunit alpha [Escherichia coli KTE171]
 gi|431287919|gb|ELF78705.1| DNA polymerase III subunit alpha [Escherichia coli KTE42]
 gi|431291668|gb|ELF82171.1| DNA polymerase III subunit alpha [Escherichia coli KTE29]
 gi|431380824|gb|ELG65463.1| DNA polymerase III subunit alpha [Escherichia coli KTE135]
 gi|431389384|gb|ELG73097.1| DNA polymerase III subunit alpha [Escherichia coli KTE136]
 gi|431406072|gb|ELG89304.1| DNA polymerase III subunit alpha [Escherichia coli KTE147]
 gi|431415238|gb|ELG97788.1| DNA polymerase III subunit alpha [Escherichia coli KTE154]
 gi|431472566|gb|ELH52454.1| DNA polymerase III subunit alpha [Escherichia coli KTE197]
 gi|431475686|gb|ELH55490.1| DNA polymerase III subunit alpha [Escherichia coli KTE203]
 gi|431574078|gb|ELI46863.1| DNA polymerase III subunit alpha [Escherichia coli KTE120]
 gi|431616304|gb|ELI85371.1| DNA polymerase III subunit alpha [Escherichia coli KTE138]
 gi|431652365|gb|ELJ19519.1| DNA polymerase III subunit alpha [Escherichia coli KTE163]
 gi|431663942|gb|ELJ30694.1| DNA polymerase III subunit alpha [Escherichia coli KTE166]
 gi|431697254|gb|ELJ62399.1| DNA polymerase III subunit alpha [Escherichia coli KTE232]
 gi|441608829|emb|CCP95493.1| DNA polymerase III alpha subunit [Escherichia coli O10:K5(L):H4 str.
            ATCC 23506]
 gi|443420703|gb|AGC85607.1| DNA polymerase III subunit alpha [Escherichia coli APEC O78]
 gi|449325767|gb|EMD15669.1| DNA polymerase III subunit alpha [Escherichia coli S17]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|422297501|ref|ZP_16385136.1| DNA polymerase III subunit alpha [Pseudomonas avellanae BPIC 631]
 gi|407991083|gb|EKG33023.1| DNA polymerase III subunit alpha [Pseudomonas avellanae BPIC 631]
          Length = 1173

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I++  +   PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPAEADELLREWLAVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+ +T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY--KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L      E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A+++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLDIAFIPLDDL 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVHADALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|331671690|ref|ZP_08372488.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
 gi|432546501|ref|ZP_19783313.1| DNA polymerase III subunit alpha [Escherichia coli KTE236]
 gi|432546906|ref|ZP_19783706.1| DNA polymerase III subunit alpha [Escherichia coli KTE237]
 gi|432600694|ref|ZP_19836950.1| DNA polymerase III subunit alpha [Escherichia coli KTE66]
 gi|432625150|ref|ZP_19861149.1| DNA polymerase III subunit alpha [Escherichia coli KTE76]
 gi|432818404|ref|ZP_20052131.1| DNA polymerase III subunit alpha [Escherichia coli KTE115]
 gi|331071535|gb|EGI42892.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
 gi|431068283|gb|ELD76788.1| DNA polymerase III subunit alpha [Escherichia coli KTE236]
 gi|431086718|gb|ELD92740.1| DNA polymerase III subunit alpha [Escherichia coli KTE237]
 gi|431144733|gb|ELE46427.1| DNA polymerase III subunit alpha [Escherichia coli KTE66]
 gi|431153216|gb|ELE54135.1| DNA polymerase III subunit alpha [Escherichia coli KTE76]
 gi|431359393|gb|ELG46038.1| DNA polymerase III subunit alpha [Escherichia coli KTE115]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVMRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|404373496|ref|ZP_10978759.1| DNA polymerase III subunit alpha [Escherichia sp. 1_1_43]
 gi|226840709|gb|EEH72711.1| DNA polymerase III subunit alpha [Escherichia sp. 1_1_43]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHEILKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|422971413|ref|ZP_16974688.1| DNA polymerase III subunit alpha [Escherichia coli TA124]
 gi|371598762|gb|EHN87557.1| DNA polymerase III subunit alpha [Escherichia coli TA124]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAAIGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVMRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|365846709|ref|ZP_09387211.1| DNA polymerase III subunit alpha [Yokenella regensburgei ATCC 43003]
 gi|364573841|gb|EHM51328.1| DNA polymerase III subunit alpha [Yokenella regensburgei ATCC 43003]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + S+L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQCDLLGDEFSQLTVLAANNVGYQNLTLLISRAYQRGYGAPGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSGA +GD+G A+  G   + E     +   FPD +Y+E+ R  + +    
Sbjct: 122  VELQEGLILLSGARMGDVGKALLRGNMPLVEQLVSFYETHFPDRYYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A    LP+VAT+ ++F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVDLAQARGLPVVATNDVRFIDSGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF D+P A++N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ KSK GL
Sbjct: 242  SEDEMCELFADLPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GEMSTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYAADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGMHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQTVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYVGGCRLKDMHPTDRGKVTTAAGLVIASRVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+ + +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQHLLENDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|334123361|ref|ZP_08497386.1| DNA-directed DNA polymerase III alpha subunit [Enterobacter
            hormaechei ATCC 49162]
 gi|333390570|gb|EGK61702.1| DNA-directed DNA polymerase III alpha subunit [Enterobacter
            hormaechei ATCC 49162]
          Length = 1160

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1151 (43%), Positives = 738/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + +++ +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLIGDELTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ +SG  +GD+G  +  G N + +     + + FPD +Y+E+ R  + +    
Sbjct: 124  --LNEGLLLISGGRMGDVGKCLLRGNNALVDQCVSFYEEYFPDRYYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEERGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  NEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  + K ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEAVRKEKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|293476841|ref|ZP_06665249.1| DNA polymerase III subunit alpha [Escherichia coli B088]
 gi|291321294|gb|EFE60736.1| DNA polymerase III subunit alpha [Escherichia coli B088]
          Length = 1162

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 6    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 66   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 124  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 183

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 184  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 243

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 244  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 303  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 363  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 423  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 481  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 541  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 601  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 660

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 661  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 721  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 781  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 835  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 894

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 895  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 954

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 955  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1014

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1015 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1074

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1075 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1133

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1134 ATWRVSPSDRL 1144


>gi|402844895|ref|ZP_10893242.1| DNA polymerase III, alpha subunit [Klebsiella sp. OBRC7]
 gi|402272495|gb|EJU21713.1| DNA polymerase III, alpha subunit [Klebsiella sp. OBRC7]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + S+L +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLLGDELSQLTVLAANNTGYQNLTLLISRAYQRGYGAAGPIIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G   + +     + + FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNMALVDQCVDFYEQHFPDCYFLELIRTGRQDEEPY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAETRGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPDERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGARKRGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417595034|ref|ZP_12245710.1| DNA polymerase III subunit alpha [Escherichia coli 3030-1]
 gi|345363246|gb|EGW95389.1| DNA polymerase III subunit alpha [Escherichia coli 3030-1]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYRRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|218703438|ref|YP_002410957.1| DNA polymerase III subunit alpha [Escherichia coli UMN026]
 gi|387605659|ref|YP_006094515.1| DNA polymerase III subunit alpha [Escherichia coli 042]
 gi|417585003|ref|ZP_12235786.1| DNA polymerase III subunit alpha [Escherichia coli STEC_C165-02]
 gi|419935212|ref|ZP_14452297.1| DNA polymerase III subunit alpha [Escherichia coli 576-1]
 gi|432351817|ref|ZP_19595130.1| DNA polymerase III subunit alpha [Escherichia coli KTE2]
 gi|432400263|ref|ZP_19643024.1| DNA polymerase III subunit alpha [Escherichia coli KTE26]
 gi|432429294|ref|ZP_19671760.1| DNA polymerase III subunit alpha [Escherichia coli KTE181]
 gi|432464036|ref|ZP_19706156.1| DNA polymerase III subunit alpha [Escherichia coli KTE204]
 gi|432474180|ref|ZP_19716197.1| DNA polymerase III subunit alpha [Escherichia coli KTE208]
 gi|432492487|ref|ZP_19734332.1| DNA polymerase III subunit alpha [Escherichia coli KTE213]
 gi|432520832|ref|ZP_19758003.1| DNA polymerase III subunit alpha [Escherichia coli KTE228]
 gi|432541006|ref|ZP_19777886.1| DNA polymerase III subunit alpha [Escherichia coli KTE235]
 gi|432634629|ref|ZP_19870536.1| DNA polymerase III subunit alpha [Escherichia coli KTE80]
 gi|432644220|ref|ZP_19880034.1| DNA polymerase III subunit alpha [Escherichia coli KTE83]
 gi|432664340|ref|ZP_19899942.1| DNA polymerase III subunit alpha [Escherichia coli KTE116]
 gi|432768992|ref|ZP_20003371.1| DNA polymerase III subunit alpha [Escherichia coli KTE50]
 gi|432773335|ref|ZP_20007637.1| DNA polymerase III subunit alpha [Escherichia coli KTE54]
 gi|432837743|ref|ZP_20071239.1| DNA polymerase III subunit alpha [Escherichia coli KTE140]
 gi|432883874|ref|ZP_20099077.1| DNA polymerase III subunit alpha [Escherichia coli KTE158]
 gi|432909741|ref|ZP_20117014.1| DNA polymerase III subunit alpha [Escherichia coli KTE190]
 gi|432958912|ref|ZP_20149770.1| DNA polymerase III subunit alpha [Escherichia coli KTE202]
 gi|433017157|ref|ZP_20205433.1| DNA polymerase III subunit alpha [Escherichia coli KTE105]
 gi|433051398|ref|ZP_20238647.1| DNA polymerase III subunit alpha [Escherichia coli KTE122]
 gi|433061391|ref|ZP_20248365.1| DNA polymerase III subunit alpha [Escherichia coli KTE125]
 gi|433066304|ref|ZP_20253159.1| DNA polymerase III subunit alpha [Escherichia coli KTE128]
 gi|433157121|ref|ZP_20342004.1| DNA polymerase III subunit alpha [Escherichia coli KTE177]
 gi|433176544|ref|ZP_20361024.1| DNA polymerase III subunit alpha [Escherichia coli KTE82]
 gi|433201624|ref|ZP_20385441.1| DNA polymerase III subunit alpha [Escherichia coli KTE95]
 gi|218430535|emb|CAR11401.1| DNA polymerase III alpha subunit [Escherichia coli UMN026]
 gi|284919959|emb|CBG33014.1| DNA polymerase III alpha subunit [Escherichia coli 042]
 gi|345342366|gb|EGW74762.1| DNA polymerase III subunit alpha [Escherichia coli STEC_C165-02]
 gi|388404950|gb|EIL65389.1| DNA polymerase III subunit alpha [Escherichia coli 576-1]
 gi|430881396|gb|ELC04650.1| DNA polymerase III subunit alpha [Escherichia coli KTE2]
 gi|430930378|gb|ELC50879.1| DNA polymerase III subunit alpha [Escherichia coli KTE26]
 gi|430948476|gb|ELC68064.1| DNA polymerase III subunit alpha [Escherichia coli KTE181]
 gi|430983339|gb|ELD00003.1| DNA polymerase III subunit alpha [Escherichia coli KTE204]
 gi|431011871|gb|ELD25945.1| DNA polymerase III subunit alpha [Escherichia coli KTE208]
 gi|431014239|gb|ELD27948.1| DNA polymerase III subunit alpha [Escherichia coli KTE213]
 gi|431046215|gb|ELD56334.1| DNA polymerase III subunit alpha [Escherichia coli KTE228]
 gi|431065161|gb|ELD73938.1| DNA polymerase III subunit alpha [Escherichia coli KTE235]
 gi|431165481|gb|ELE65834.1| DNA polymerase III subunit alpha [Escherichia coli KTE80]
 gi|431176101|gb|ELE76087.1| DNA polymerase III subunit alpha [Escherichia coli KTE83]
 gi|431205379|gb|ELF03872.1| DNA polymerase III subunit alpha [Escherichia coli KTE116]
 gi|431320150|gb|ELG07798.1| DNA polymerase III subunit alpha [Escherichia coli KTE50]
 gi|431321845|gb|ELG09445.1| DNA polymerase III subunit alpha [Escherichia coli KTE54]
 gi|431392574|gb|ELG76147.1| DNA polymerase III subunit alpha [Escherichia coli KTE140]
 gi|431420800|gb|ELH03076.1| DNA polymerase III subunit alpha [Escherichia coli KTE158]
 gi|431448791|gb|ELH29504.1| DNA polymerase III subunit alpha [Escherichia coli KTE190]
 gi|431483407|gb|ELH63099.1| DNA polymerase III subunit alpha [Escherichia coli KTE202]
 gi|431538089|gb|ELI14194.1| DNA polymerase III subunit alpha [Escherichia coli KTE105]
 gi|431576491|gb|ELI49178.1| DNA polymerase III subunit alpha [Escherichia coli KTE122]
 gi|431589670|gb|ELI60884.1| DNA polymerase III subunit alpha [Escherichia coli KTE125]
 gi|431593166|gb|ELI63730.1| DNA polymerase III subunit alpha [Escherichia coli KTE128]
 gi|431683290|gb|ELJ48928.1| DNA polymerase III subunit alpha [Escherichia coli KTE177]
 gi|431711721|gb|ELJ76034.1| DNA polymerase III subunit alpha [Escherichia coli KTE82]
 gi|431727350|gb|ELJ91110.1| DNA polymerase III subunit alpha [Escherichia coli KTE95]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A +  LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVMRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|194428253|ref|ZP_03060795.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
 gi|194413628|gb|EDX29908.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEATYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|157159649|ref|YP_001456967.1| DNA polymerase III subunit alpha [Escherichia coli HS]
 gi|191167047|ref|ZP_03028869.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
 gi|194439917|ref|ZP_03071979.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
 gi|251783742|ref|YP_002998046.1| DNA polymerase III, alpha subunit, subunit of DNA polymerase III,
            core enzyme and DNA polymerase III, holoenzyme
            [Escherichia coli BL21(DE3)]
 gi|253774789|ref|YP_003037620.1| DNA polymerase III subunit alpha [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|254160303|ref|YP_003043411.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
 gi|254287106|ref|YP_003052854.1| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)]
 gi|331651089|ref|ZP_08352117.1| DNA polymerase III subunit alpha [Escherichia coli M718]
 gi|386703382|ref|YP_006167229.1| DNA polymerase III subunit alpha [Escherichia coli P12b]
 gi|387610656|ref|YP_006113772.1| DNA polymerase III subunit alpha [Escherichia coli ETEC H10407]
 gi|417168452|ref|ZP_12000903.1| DNA polymerase III, alpha subunit [Escherichia coli 99.0741]
 gi|417190594|ref|ZP_12013190.1| DNA polymerase III, alpha subunit [Escherichia coli 4.0522]
 gi|417216521|ref|ZP_12023193.1| DNA polymerase III, alpha subunit [Escherichia coli JB1-95]
 gi|417244400|ref|ZP_12038410.1| DNA polymerase III, alpha subunit [Escherichia coli 9.0111]
 gi|417589805|ref|ZP_12240526.1| DNA polymerase III subunit alpha [Escherichia coli 2534-86]
 gi|419195143|ref|ZP_13738558.1| DNA polymerase III subunit alpha [Escherichia coli DEC8A]
 gi|419201238|ref|ZP_13744470.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC8B]
 gi|419224831|ref|ZP_13767726.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9A]
 gi|419230671|ref|ZP_13773467.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9B]
 gi|419241584|ref|ZP_13784236.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9D]
 gi|419246988|ref|ZP_13789607.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9E]
 gi|419281816|ref|ZP_13824041.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10F]
 gi|419891799|ref|ZP_14411840.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CVM9570]
 gi|419893463|ref|ZP_14413447.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CVM9574]
 gi|419929354|ref|ZP_14447029.1| DNA polymerase III subunit alpha [Escherichia coli 541-1]
 gi|420087293|ref|ZP_14599264.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CVM9602]
 gi|420092428|ref|ZP_14604130.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CVM9634]
 gi|422788420|ref|ZP_16841157.1| DNA polymerase III [Escherichia coli H489]
 gi|422830349|ref|ZP_16878508.1| DNA polymerase III subunit alpha [Escherichia coli B093]
 gi|422957475|ref|ZP_16969689.1| DNA polymerase III subunit alpha [Escherichia coli H494]
 gi|424774787|ref|ZP_18201797.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CFSAN001632]
 gi|425303696|ref|ZP_18693511.1| DNA polymerase III subunit alpha [Escherichia coli N1]
 gi|432529485|ref|ZP_19766543.1| DNA polymerase III subunit alpha [Escherichia coli KTE233]
 gi|432532398|ref|ZP_19769406.1| DNA polymerase III subunit alpha [Escherichia coli KTE234]
 gi|432614986|ref|ZP_19851123.1| DNA polymerase III subunit alpha [Escherichia coli KTE75]
 gi|432678596|ref|ZP_19914001.1| DNA polymerase III subunit alpha [Escherichia coli KTE143]
 gi|432808817|ref|ZP_20042727.1| DNA polymerase III subunit alpha [Escherichia coli KTE91]
 gi|432856993|ref|ZP_20084244.1| DNA polymerase III subunit alpha [Escherichia coli KTE144]
 gi|432858488|ref|ZP_20084984.1| DNA polymerase III subunit alpha [Escherichia coli KTE146]
 gi|432932444|ref|ZP_20132346.1| DNA polymerase III subunit alpha [Escherichia coli KTE184]
 gi|433191973|ref|ZP_20376006.1| DNA polymerase III subunit alpha [Escherichia coli KTE90]
 gi|442597798|ref|ZP_21015576.1| DNA polymerase III alpha subunit [Escherichia coli O5:K4(L):H4 str.
            ATCC 23502]
 gi|450185120|ref|ZP_21888967.1| DNA polymerase III subunit alpha [Escherichia coli SEPT362]
 gi|450209557|ref|ZP_21893972.1| DNA polymerase III subunit alpha [Escherichia coli O08]
 gi|157065329|gb|ABV04584.1| DNA polymerase III, alpha subunit [Escherichia coli HS]
 gi|190902940|gb|EDV62667.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
 gi|194421163|gb|EDX37188.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
 gi|242376015|emb|CAQ30698.1| DNA polymerase III, alpha subunit, subunit of DNA polymerase III,
            core enzyme and DNA polymerase III, holoenzyme
            [Escherichia coli BL21(DE3)]
 gi|253325833|gb|ACT30435.1| DNA polymerase III, alpha subunit [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|253972204|gb|ACT37875.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
 gi|253976413|gb|ACT42083.1| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)]
 gi|309700392|emb|CBI99680.1| DNA polymerase III alpha subunit [Escherichia coli ETEC H10407]
 gi|323959945|gb|EGB55592.1| DNA polymerase III [Escherichia coli H489]
 gi|331051543|gb|EGI23592.1| DNA polymerase III subunit alpha [Escherichia coli M718]
 gi|345346163|gb|EGW78499.1| DNA polymerase III subunit alpha [Escherichia coli 2534-86]
 gi|371598092|gb|EHN86906.1| DNA polymerase III subunit alpha [Escherichia coli H494]
 gi|371605341|gb|EHN93958.1| DNA polymerase III subunit alpha [Escherichia coli B093]
 gi|378054657|gb|EHW16935.1| DNA polymerase III subunit alpha [Escherichia coli DEC8A]
 gi|378058145|gb|EHW20365.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC8B]
 gi|378083231|gb|EHW45166.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9A]
 gi|378083538|gb|EHW45470.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9B]
 gi|378095889|gb|EHW57671.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9D]
 gi|378104004|gb|EHW65666.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9E]
 gi|378141416|gb|EHX02633.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10F]
 gi|383101550|gb|AFG39059.1| DNA polymerase III, alpha subunit [Escherichia coli P12b]
 gi|386170500|gb|EIH42553.1| DNA polymerase III, alpha subunit [Escherichia coli 99.0741]
 gi|386191566|gb|EIH80307.1| DNA polymerase III, alpha subunit [Escherichia coli 4.0522]
 gi|386193383|gb|EIH87667.1| DNA polymerase III, alpha subunit [Escherichia coli JB1-95]
 gi|386211065|gb|EII21535.1| DNA polymerase III, alpha subunit [Escherichia coli 9.0111]
 gi|388348818|gb|EIL14386.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CVM9570]
 gi|388367397|gb|EIL31081.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CVM9574]
 gi|388403381|gb|EIL63908.1| DNA polymerase III subunit alpha [Escherichia coli 541-1]
 gi|394393543|gb|EJE70228.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CVM9602]
 gi|394400446|gb|EJE76360.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CVM9634]
 gi|408232747|gb|EKI55915.1| DNA polymerase III subunit alpha [Escherichia coli N1]
 gi|421933643|gb|EKT91430.1| DNA polymerase III subunit alpha [Escherichia coli O111:H8 str.
            CFSAN001632]
 gi|431057823|gb|ELD67241.1| DNA polymerase III subunit alpha [Escherichia coli KTE233]
 gi|431064879|gb|ELD73737.1| DNA polymerase III subunit alpha [Escherichia coli KTE234]
 gi|431158695|gb|ELE59293.1| DNA polymerase III subunit alpha [Escherichia coli KTE75]
 gi|431225552|gb|ELF22752.1| DNA polymerase III subunit alpha [Escherichia coli KTE143]
 gi|431352040|gb|ELG38826.1| DNA polymerase III subunit alpha [Escherichia coli KTE91]
 gi|431395501|gb|ELG79013.1| DNA polymerase III subunit alpha [Escherichia coli KTE144]
 gi|431408731|gb|ELG91914.1| DNA polymerase III subunit alpha [Escherichia coli KTE146]
 gi|431457454|gb|ELH37793.1| DNA polymerase III subunit alpha [Escherichia coli KTE184]
 gi|431723795|gb|ELJ87740.1| DNA polymerase III subunit alpha [Escherichia coli KTE90]
 gi|441653463|emb|CCQ03792.1| DNA polymerase III alpha subunit [Escherichia coli O5:K4(L):H4 str.
            ATCC 23502]
 gi|449323642|gb|EMD13595.1| DNA polymerase III subunit alpha [Escherichia coli O08]
 gi|449325390|gb|EMD15297.1| DNA polymerase III subunit alpha [Escherichia coli SEPT362]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|422834474|ref|ZP_16882536.1| DNA polymerase III subunit alpha [Escherichia coli E101]
 gi|371601994|gb|EHN90713.1| DNA polymerase III subunit alpha [Escherichia coli E101]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVKLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|423112620|ref|ZP_17100311.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5245]
 gi|376390997|gb|EHT03679.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5245]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + S+L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLLGDELSQLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G   + +     +++ FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNMALVDQCVDFYAQHFPDCYFLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVKLAETRGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEERIKRRPEYDERLDVELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|293403253|ref|ZP_06647350.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
 gi|298378789|ref|ZP_06988673.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
 gi|291430168|gb|EFF03182.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
 gi|298281123|gb|EFI22624.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
          Length = 1162

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 6    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 66   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 124  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 183

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A +  LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 184  LHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 243

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 244  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVMRAKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 303  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 363  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 423  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 481  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 541  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 601  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 660

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 661  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 721  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 781  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 835  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 894

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 895  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 954

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 955  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1014

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1015 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1074

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1075 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1133

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1134 ATWRVSPSDRL 1144


>gi|293408276|ref|ZP_06652116.1| DNA polymerase III subunit alpha [Escherichia coli B354]
 gi|291472527|gb|EFF15009.1| DNA polymerase III subunit alpha [Escherichia coli B354]
          Length = 1162

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 6    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 66   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 124  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 183

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 184  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 243

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 244  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 303  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 363  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 423  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 481  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 541  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 601  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 660

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 661  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 721  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 781  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 835  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 894

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 895  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 954

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 955  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1014

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1015 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1074

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1075 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1133

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1134 ATWRVSPSDRL 1144


>gi|375259099|ref|YP_005018269.1| DNA polymerase III subunit alpha [Klebsiella oxytoca KCTC 1686]
 gi|365908577|gb|AEX04030.1| DNA polymerase III subunit alpha [Klebsiella oxytoca KCTC 1686]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + S+L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLLGDELSQLTVLAANNAGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G   + +     + + FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNMALVDQCVDFYEQHFPDCYFLELIRTGRQDEEPY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAETRGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPDERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGARKRGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|432944749|ref|ZP_20141159.1| DNA polymerase III subunit alpha [Escherichia coli KTE196]
 gi|433041679|ref|ZP_20229218.1| DNA polymerase III subunit alpha [Escherichia coli KTE117]
 gi|431464680|gb|ELH44799.1| DNA polymerase III subunit alpha [Escherichia coli KTE196]
 gi|431561324|gb|ELI34708.1| DNA polymerase III subunit alpha [Escherichia coli KTE117]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRSEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|386287210|ref|ZP_10064385.1| DNA polymerase III subunit alpha [gamma proteobacterium BDW918]
 gi|385279742|gb|EIF43679.1| DNA polymerase III subunit alpha [gamma proteobacterium BDW918]
          Length = 1161

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1173 (42%), Positives = 739/1173 (63%), Gaps = 36/1173 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HSEYS++DGL+R+ ++ +  A    PA+A+TDL+N + +IKF K+A   G
Sbjct: 1    MNDSFVHLRVHSEYSLVDGLVRVKELTKRVAKLGMPAVALTDLNNFYALIKFQKAAMAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI GCD+ + ++ +  + + + LL +N  GY  L EL+S+AY +    G+A     W+
Sbjct: 61   VKPIFGCDLLMRDDDDPDQTTVICLLAQNEKGYRNLTELISRAYQDGQYLGKAYAYRSWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E+    +GLIALSG   GD+G A+  G+ D+A++   RW  +FPD FY+E+QR  + N +
Sbjct: 121  EQAS--EGLIALSGGREGDVGQALLAGKADVAQHSLSRWLAVFPDRFYLELQRTGRQNED 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   I +A   N P+VAT+ ++FL   EF AH+ R CI +G +L + +R + ++ +Q 
Sbjct: 179  DYIHAAIGLAERNNCPVVATNDVRFLDAGEFEAHDARVCIRDGRVLDDPRRPRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  +M +LF DIP A+QN++EIAKRCNL ++ G   LP++P P+ +    +       
Sbjct: 239  LRSPEDMAELFADIPEALQNSVEIAKRCNLTIQLGTYYLPEYPIPEGMTQETYFRQLCHD 298

Query: 301  GLKKRLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL +RL  L+    PE ++  +  Y+ RL+FE+  I++M F GYFLIV DFIQWAK++ I
Sbjct: 299  GLDQRLDFLFDRNSPE-FEAHQSEYRDRLEFELNVILQMGFPGYFLIVMDFIQWAKDHDI 357

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI 
Sbjct: 358  PVGPGRGSGAGSLVAYALKITDLDPIQYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIN 417

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV D YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  ITL  A
Sbjct: 418  YVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKAYGLADKLSKMIPFEVG--ITLEKA 475

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L E +  +E+ +++ ++A Q+EG++R VG HAGGV+IAPSKL +F PLY  +  
Sbjct: 476  FEQEEILREFLAADEQAQEIWDMATQLEGVVRGVGKHAGGVVIAPSKLTDFAPLYCDDAG 535

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDK 596
             G+++Q+DK D+EE GL+KFDFLGL TL+I+   +  +     K     L+   +PL D+
Sbjct: 536  GGLVTQFDKSDVEEAGLVKFDFLGLRTLTIIHWALKIVNAQRAKLGEDPLDIMSIPLQDR 595

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ +LK+A T AVFQLES+GMK+++K   PD FE+IIAL++L+RPGP+   ++ +F  R
Sbjct: 596  PTFEMLKRAETTAVFQLESRGMKDLIKRLLPDCFEDIIALVALFRPGPLQSGMVDDFINR 655

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P+      K VL  TYGI++YQEQVMQIAQ++GG SLG ADLLRRA+GK
Sbjct: 656  KHGRAELAYPHPQYQHECLKPVLDPTYGIILYQEQVMQIAQVMGGVSLGGADLLRRAMGK 715

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            K  +EM + R  FQ GA++ G S+  A+ IF+ +EKFAGYGFNKSH+ AYAL+SY TA+L
Sbjct: 716  KNAAEMDKQRSLFQTGAVEKGFSEELASNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWL 775

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA +S  +D+T+KI I +++  +   L    P++N  +Y F     +    
Sbjct: 776  KTHYPAPFMAAVMSSELDNTDKIVIFIEEC-REMKLDYKLPSVNEGEYMF-----TVNDR 829

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YGLGAIKG G+  +E I+  R  G  F NLF+F +R D + +N+R I +LI SGAF
Sbjct: 830  GQIVYGLGAIKGLGEGPVENIIAARNGGGPFKNLFEFCERTDPRKVNKRAIEALIRSGAF 889

Query: 888  DCFNEKRYMLVASIDVALKNAEKTKKFI--NQLSLFKND---DNNNLKEYLNYVKVPSWS 942
            D   E R +L+A++  A++ AE+         + LF      ++     Y ++  V  W+
Sbjct: 890  DDLGEDRAVLMAAMPDAVQAAEQAASNAESGMMDLFGGSLAVEDEGGDVYASFKNVRRWT 949

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT-YSCTVSGIITELKLKTT 1001
             K+ L+ EK+ LG  ++ H    YE E+R+F+P  + +L P  +  T++G++   +    
Sbjct: 950  TKERLLGEKETLGLYVTGHPIDDYEAELRRFVPRKIVDLNPEKHPQTIAGLVMSTRTMKN 1009

Query: 1002 YRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             RG  +  +++DD S  +EV + +  Y++ +  L ++ +++V G    D +    ++  +
Sbjct: 1010 KRGDTMAFVLLDDRSARIEVALFSDAYDECREKLIKDTVIVVEGVCSNDEYSGGKKMRVK 1069

Query: 1061 KIFDINVARILYGK--KFSVMFNRTFNISILK-KILLRFKCKNGLPFVLYYCINKSIKYE 1117
             +  I  AR  + +  + SV  +   + +I + K  L        P V+ Y   +    +
Sbjct: 1070 AVRSIAEARDQHARELQLSVSADLVNDDAIARLKGALSVAKGGRCPVVINYQRPEG-SGK 1128

Query: 1118 MKFPLNYKVQPIDDLKLALI-NLGLYNAIIEYS 1149
            ++   N+++ P D+L L L    G  N +I Y 
Sbjct: 1129 IRLGDNWRILPNDELLLRLGEECGANNVVINYD 1161


>gi|218547639|ref|YP_002381430.1| DNA polymerase III subunit alpha [Escherichia fergusonii ATCC 35469]
 gi|422783046|ref|ZP_16835830.1| DNA polymerase III [Escherichia coli TW10509]
 gi|422806594|ref|ZP_16855025.1| DNA polymerase III [Escherichia fergusonii B253]
 gi|218355180|emb|CAQ87787.1| DNA polymerase III alpha subunit [Escherichia fergusonii ATCC 35469]
 gi|323975648|gb|EGB70744.1| DNA polymerase III [Escherichia coli TW10509]
 gi|324112405|gb|EGC06382.1| DNA polymerase III [Escherichia fergusonii B253]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417269674|ref|ZP_12057034.1| DNA polymerase III, alpha subunit [Escherichia coli 3.3884]
 gi|386228479|gb|EII55835.1| DNA polymerase III, alpha subunit [Escherichia coli 3.3884]
          Length = 1160

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGEGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|304312463|ref|YP_003812061.1| DNA polymerase III subunit alpha [gamma proteobacterium HdN1]
 gi|301798196|emb|CBL46418.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1]
          Length = 1173

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1095 (44%), Positives = 709/1095 (64%), Gaps = 25/1095 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLRLH+EYS++DGL+R+  ++E AA    PA+A+TD S L+G++KF K     G+K
Sbjct: 20   PTFVHLRLHTEYSLVDGLVRVKKLVEKAAELGMPAVAVTDYSGLYGLVKFQKYGLPAGVK 79

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI G D+W+ N      PS + LL  +  GY  + +L+S+A++     G+A +  E L  
Sbjct: 80   PIYGADIWLANLDVEGSPSLITLLAMDVQGYRNITKLVSEAFLTGQRNGKAIVSRELL-- 137

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +++ DG+I LSG   G++G A+   R D AE  AR  + ++PD FY+E+QR ++      
Sbjct: 138  HQFADGIICLSGGRQGELGQALLQERPDRAEQIAREMAALYPDRFYLEVQRTERAGDETY 197

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FLK++++ AHEVR CI  G  L + +R   ++ +Q  K
Sbjct: 198  LHLAVALADRFALPVVATNDVRFLKRSDYEAHEVRVCINAGWTLDDPRREMNYSDQQYLK 257

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM+ LF D+P A++NT+EIAKRCN+++  G   LP +P P+ + I+ +L+ +++ GL
Sbjct: 258  SPQEMVALFADLPEALENTVEIAKRCNVEIPLGTYFLPDYPVPEGMTIDSYLVHQAEEGL 317

Query: 303  KKRLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
              RL  LY    P+  +  + RY +RL+ E++ IIKM F GYFLIV+DFIQWAKNN +PV
Sbjct: 318  NARLAFLYDITRPDFAEI-RARYDERLRIELDCIIKMGFPGYFLIVADFIQWAKNNGVPV 376

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY++ ITD+DPL Y+LLFERFLNP RISMPDFD+DFC EGRDRVI YV
Sbjct: 377  GPGRGSGAGSLVAYAIKITDLDPLEYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDYV 436

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             ++YG+DAVSQI+TFG+MAAK  +RDVGRV    Y F D I+KLIPF+ G  +TL  A++
Sbjct: 437  AEKYGRDAVSQIITFGSMAAKAVVRDVGRVQGKSYGFVDRIAKLIPFELG--MTLEKAME 494

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +EPQL E    +EEV  L+++A ++EGI R VG HAGGV+IAPS L N+ PLY  E    
Sbjct: 495  QEPQLKELYNADEEVHDLLDMALKLEGICRGVGKHAGGVVIAPSALTNYVPLYCDETGHN 554

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTK-TTNFSLNKLPLNDKDT 598
            +++QYDKDD+E+ GL+KFDFLGL TL+I+D  +  I  ++  K      + ++ L+D  T
Sbjct: 555  LVTQYDKDDVEQAGLVKFDFLGLRTLTIIDWALGIINPRLQRKGEAAVDIARIRLDDPAT 614

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKH 656
            + LL+ A T AVFQLES+GMK+++K  KP  FE+IIAL++L+RPGP+   ++ +F  RKH
Sbjct: 615  FRLLQSAETTAVFQLESRGMKDLIKRLKPSVFEDIIALVALFRPGPLGSGMVDDFIARKH 674

Query: 657  G-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G +   YP P  K VL  TYG ++YQEQVM I Q+L GYSLG AD+LRRA+GKKK  EM 
Sbjct: 675  GKQAVTYPHPDLKPVLDTTYGTILYQEQVMLIPQVLAGYSLGGADILRRAMGKKKADEMA 734

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R  F +G  K  + +  A EIF+ +E+FA YGFNKSH+ AYAL+SY TA+LK HY + 
Sbjct: 735  KQRSIFTDGCAKNQIDEKLAGEIFDTMEEFAKYGFNKSHSAAYALVSYQTAWLKAHYPAG 794

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FM+A LS  M +T+KI I + D  +  GL I+ P++N S Y F     +D  H  I YGL
Sbjct: 795  FMSAVLSADMHNTDKIVIFI-DECRRMGLQIVSPHVNTSAYKF---DVNDANH--IVYGL 848

Query: 836  GAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G   IEAI+  R  G  FT+LF+F +R+D K +NRR++ +LI SGA D     R
Sbjct: 849  GAIKGLGAGPIEAIIEARDAGAPFTDLFEFCRRVDMKKLNRRVLEALIRSGAMDGMGPDR 908

Query: 895  YMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE-EKKV 953
             +++AS+D A K A +  +  +   +    +    +E+     V   +   EL++ EK  
Sbjct: 909  AIMLASLDEAAKAAGQAAESADAGMMDLFGELGGAEEFTPAWSVAKPASPDELLQGEKDT 968

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS----CTVSGIITELKLKTTYRG-KILI 1008
            LG  L+ H    +E E+  FI   + ++KP+ S      ++G++  ++     RG ++  
Sbjct: 969  LGLYLTGHPIDQFEEELSHFISSKICDVKPSQSRDQKSIIAGLVIAVRTMKNKRGDRMGF 1028

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            + +DD S  +EV + + ++E+ + +L ++ +L+  G V  D F   +++   K+F I  A
Sbjct: 1029 LTLDDKSGRMEVSLFSDVFEQYRELLTKDVVLVAEGDVSMDDFSGGLKMVVRKLFSIGQA 1088

Query: 1069 RILYGKKFSVMFNRT 1083
            R  + +  ++  N +
Sbjct: 1089 RESFARLITLRLNAS 1103


>gi|419343852|ref|ZP_13885238.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13A]
 gi|419353176|ref|ZP_13894464.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13C]
 gi|419358521|ref|ZP_13899753.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13D]
 gi|419363473|ref|ZP_13904657.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13E]
 gi|378190856|gb|EHX51434.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13A]
 gi|378208623|gb|EHX69004.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13D]
 gi|378209605|gb|EHX69974.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13C]
 gi|378220330|gb|EHX80591.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13E]
          Length = 1160

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEVDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|193067721|ref|ZP_03048688.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
 gi|432677780|ref|ZP_19913210.1| DNA polymerase III subunit alpha [Escherichia coli KTE142]
 gi|192959133|gb|EDV89569.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
 gi|431207962|gb|ELF06192.1| DNA polymerase III subunit alpha [Escherichia coli KTE142]
          Length = 1160

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHENLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|409426387|ref|ZP_11260942.1| DNA polymerase III subunit alpha [Pseudomonas sp. HYS]
          Length = 1173

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1188 (41%), Positives = 742/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  + +A      PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MSASFVHLRLHTEYSLVDGLVRIKPLAKALVAMNMPAVAVTDQSNMCSLVKFYKNAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ N   +   SR+ LL  +  GY  L EL+S+ +++    G   I   W+
Sbjct: 61   IKPICGADLWLANSDPDAPLSRICLLAMDAKGYRNLTELISRGWVDGQRNGLVIIERPWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLIALS A  GDIG+A+ NG  D AE   R W ++FP+ FY+E+QR  +    
Sbjct: 121  AEA--SEGLIALSAAKEGDIGMALLNGNPDEAEALLRDWLQMFPERFYVEVQRTNRAGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  ++ P+VAT+ ++F+K++++ AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVALADKLDAPLVATNDVRFIKQSDYDAHETRVCIGEGRALDDPRRSRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPEEMAELFSDLPEAIANTVEIAKRCNIQVQLGKHFLPDFPTPNGMGIDDYLRHVSHE 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +
Sbjct: 299  GLEERLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV D YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K++E+ +++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E  
Sbjct: 477  YEQEEILRDFLKSDEDAKEIWDMALKLEGVCRGTGKHAGGVVIAPTKLTDFSPIACDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+DK
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKKGLDDLNIDFIPLDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  KTYDLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCATNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTH+ + FMAA LS  M +T+K+  L+++ +++  L +  P++N S + F   +  DG  
Sbjct: 777  KTHHPAPFMAAVLSADMHNTDKVVTLIEE-VRSMKLRLDAPDVNTSDFKF--TVNDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAIV  R  G F +LFDF +R+D K IN+R +++LI SGA D
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAIVEARAAGPFKDLFDFCERVDLKRINKRTLDALIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K+AE+T +  +         LF   D +
Sbjct: 891  RLGPYFHDELKAYQANIDRNRAVLLAAMEEAIKSAEQTARTADSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKARELTLKERLRGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  + +DD S  +E  +    +   + +L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQALLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +R+  +++  +  AR    +   +  +    +   +S L ++  R   +  
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRLKVHADALKGDRLSWLGELFKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y      K  ++F  ++++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMEYT-GSDAKAMLQFGESWRIDPADGLIQALRDQFGRENVFLQY 1172


>gi|91209254|ref|YP_539240.1| DNA polymerase III subunit alpha [Escherichia coli UTI89]
 gi|117622469|ref|YP_851382.1| DNA polymerase III subunit alpha [Escherichia coli APEC O1]
 gi|191172778|ref|ZP_03034315.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
 gi|218557125|ref|YP_002390038.1| DNA polymerase III subunit alpha [Escherichia coli S88]
 gi|222155009|ref|YP_002555148.1| DNA polymerase III subunit alpha [Escherichia coli LF82]
 gi|237704343|ref|ZP_04534824.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|331681569|ref|ZP_08382206.1| DNA polymerase III subunit alpha [Escherichia coli H299]
 gi|386597934|ref|YP_006099440.1| DNA polymerase III subunit alpha [Escherichia coli IHE3034]
 gi|386607276|ref|YP_006113576.1| DNA polymerase III subunit alpha [Escherichia coli UM146]
 gi|387615531|ref|YP_006118553.1| DNA polymerase III subunit alpha [Escherichia coli O83:H1 str. NRG
            857C]
 gi|416334577|ref|ZP_11671410.1| DNA polymerase III alpha subunit [Escherichia coli WV_060327]
 gi|417288242|ref|ZP_12075528.1| DNA polymerase III, alpha subunit [Escherichia coli TW07793]
 gi|419699113|ref|ZP_14226736.1| DNA polymerase III subunit alpha [Escherichia coli SCI-07]
 gi|419942381|ref|ZP_14458984.1| DNA polymerase III subunit alpha [Escherichia coli HM605]
 gi|422750426|ref|ZP_16804336.1| DNA polymerase III [Escherichia coli H252]
 gi|422756525|ref|ZP_16810348.1| DNA polymerase III [Escherichia coli H263]
 gi|422839814|ref|ZP_16887785.1| DNA polymerase III subunit alpha [Escherichia coli H397]
 gi|432356544|ref|ZP_19599792.1| DNA polymerase III subunit alpha [Escherichia coli KTE4]
 gi|432366042|ref|ZP_19609177.1| DNA polymerase III subunit alpha [Escherichia coli KTE5]
 gi|432439520|ref|ZP_19681885.1| DNA polymerase III subunit alpha [Escherichia coli KTE189]
 gi|432444643|ref|ZP_19686954.1| DNA polymerase III subunit alpha [Escherichia coli KTE191]
 gi|432469517|ref|ZP_19711573.1| DNA polymerase III subunit alpha [Escherichia coli KTE206]
 gi|432572078|ref|ZP_19808572.1| DNA polymerase III subunit alpha [Escherichia coli KTE55]
 gi|432586514|ref|ZP_19822887.1| DNA polymerase III subunit alpha [Escherichia coli KTE58]
 gi|432596083|ref|ZP_19832373.1| DNA polymerase III subunit alpha [Escherichia coli KTE62]
 gi|432711872|ref|ZP_19946926.1| DNA polymerase III subunit alpha [Escherichia coli KTE8]
 gi|432730906|ref|ZP_19965767.1| DNA polymerase III subunit alpha [Escherichia coli KTE45]
 gi|432757699|ref|ZP_19992233.1| DNA polymerase III subunit alpha [Escherichia coli KTE22]
 gi|432762457|ref|ZP_19996921.1| DNA polymerase III subunit alpha [Escherichia coli KTE46]
 gi|432777068|ref|ZP_20011324.1| DNA polymerase III subunit alpha [Escherichia coli KTE59]
 gi|432790768|ref|ZP_20024889.1| DNA polymerase III subunit alpha [Escherichia coli KTE65]
 gi|432800512|ref|ZP_20034503.1| DNA polymerase III subunit alpha [Escherichia coli KTE84]
 gi|432819535|ref|ZP_20053250.1| DNA polymerase III subunit alpha [Escherichia coli KTE118]
 gi|432825664|ref|ZP_20059321.1| DNA polymerase III subunit alpha [Escherichia coli KTE123]
 gi|432896856|ref|ZP_20107950.1| DNA polymerase III subunit alpha [Escherichia coli KTE192]
 gi|433003726|ref|ZP_20192165.1| DNA polymerase III subunit alpha [Escherichia coli KTE227]
 gi|433010933|ref|ZP_20199338.1| DNA polymerase III subunit alpha [Escherichia coli KTE229]
 gi|433012358|ref|ZP_20200747.1| DNA polymerase III subunit alpha [Escherichia coli KTE104]
 gi|433026553|ref|ZP_20214507.1| DNA polymerase III subunit alpha [Escherichia coli KTE106]
 gi|433027203|ref|ZP_20215083.1| DNA polymerase III subunit alpha [Escherichia coli KTE109]
 gi|433076343|ref|ZP_20262923.1| DNA polymerase III subunit alpha [Escherichia coli KTE131]
 gi|433152320|ref|ZP_20337294.1| DNA polymerase III subunit alpha [Escherichia coli KTE176]
 gi|433161966|ref|ZP_20346736.1| DNA polymerase III subunit alpha [Escherichia coli KTE179]
 gi|433166901|ref|ZP_20351587.1| DNA polymerase III subunit alpha [Escherichia coli KTE180]
 gi|433196754|ref|ZP_20380692.1| DNA polymerase III subunit alpha [Escherichia coli KTE94]
 gi|433325069|ref|ZP_20402286.1| DNA polymerase III subunit alpha [Escherichia coli J96]
 gi|91070828|gb|ABE05709.1| DNA polymerase III alpha subunit [Escherichia coli UTI89]
 gi|115511593|gb|ABI99667.1| DNA polymerase III alpha subunit [Escherichia coli APEC O1]
 gi|190906928|gb|EDV66530.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
 gi|218363894|emb|CAR01559.1| DNA polymerase III alpha subunit [Escherichia coli S88]
 gi|222032014|emb|CAP74753.1| DNA polymerase III subunit alpha [Escherichia coli LF82]
 gi|226902255|gb|EEH88514.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|294489552|gb|ADE88308.1| DNA polymerase III, alpha subunit [Escherichia coli IHE3034]
 gi|307629760|gb|ADN74064.1| DNA polymerase III subunit alpha [Escherichia coli UM146]
 gi|312944792|gb|ADR25619.1| DNA polymerase III subunit alpha [Escherichia coli O83:H1 str. NRG
            857C]
 gi|320196939|gb|EFW71560.1| DNA polymerase III alpha subunit [Escherichia coli WV_060327]
 gi|323950817|gb|EGB46694.1| DNA polymerase III [Escherichia coli H252]
 gi|323955145|gb|EGB50920.1| DNA polymerase III [Escherichia coli H263]
 gi|331081790|gb|EGI52951.1| DNA polymerase III subunit alpha [Escherichia coli H299]
 gi|371608298|gb|EHN96854.1| DNA polymerase III subunit alpha [Escherichia coli H397]
 gi|380349755|gb|EIA38020.1| DNA polymerase III subunit alpha [Escherichia coli SCI-07]
 gi|386249027|gb|EII95199.1| DNA polymerase III, alpha subunit [Escherichia coli TW07793]
 gi|388422943|gb|EIL82492.1| DNA polymerase III subunit alpha [Escherichia coli HM605]
 gi|430880135|gb|ELC03456.1| DNA polymerase III subunit alpha [Escherichia coli KTE4]
 gi|430881149|gb|ELC04411.1| DNA polymerase III subunit alpha [Escherichia coli KTE5]
 gi|430969928|gb|ELC87021.1| DNA polymerase III subunit alpha [Escherichia coli KTE189]
 gi|430976755|gb|ELC93613.1| DNA polymerase III subunit alpha [Escherichia coli KTE191]
 gi|431001495|gb|ELD17078.1| DNA polymerase III subunit alpha [Escherichia coli KTE206]
 gi|431111805|gb|ELE15696.1| DNA polymerase III subunit alpha [Escherichia coli KTE55]
 gi|431124415|gb|ELE27061.1| DNA polymerase III subunit alpha [Escherichia coli KTE58]
 gi|431134679|gb|ELE36628.1| DNA polymerase III subunit alpha [Escherichia coli KTE62]
 gi|431260416|gb|ELF52514.1| DNA polymerase III subunit alpha [Escherichia coli KTE8]
 gi|431278920|gb|ELF69893.1| DNA polymerase III subunit alpha [Escherichia coli KTE45]
 gi|431297600|gb|ELF87250.1| DNA polymerase III subunit alpha [Escherichia coli KTE22]
 gi|431302409|gb|ELF91595.1| DNA polymerase III subunit alpha [Escherichia coli KTE46]
 gi|431331702|gb|ELG18948.1| DNA polymerase III subunit alpha [Escherichia coli KTE59]
 gi|431333780|gb|ELG20965.1| DNA polymerase III subunit alpha [Escherichia coli KTE65]
 gi|431351408|gb|ELG38195.1| DNA polymerase III subunit alpha [Escherichia coli KTE84]
 gi|431371294|gb|ELG57079.1| DNA polymerase III subunit alpha [Escherichia coli KTE118]
 gi|431375048|gb|ELG60392.1| DNA polymerase III subunit alpha [Escherichia coli KTE123]
 gi|431431000|gb|ELH12779.1| DNA polymerase III subunit alpha [Escherichia coli KTE192]
 gi|431518677|gb|ELH96131.1| DNA polymerase III subunit alpha [Escherichia coli KTE227]
 gi|431519145|gb|ELH96597.1| DNA polymerase III subunit alpha [Escherichia coli KTE229]
 gi|431527980|gb|ELI04694.1| DNA polymerase III subunit alpha [Escherichia coli KTE106]
 gi|431536927|gb|ELI13083.1| DNA polymerase III subunit alpha [Escherichia coli KTE104]
 gi|431546920|gb|ELI21307.1| DNA polymerase III subunit alpha [Escherichia coli KTE109]
 gi|431603337|gb|ELI72763.1| DNA polymerase III subunit alpha [Escherichia coli KTE131]
 gi|431679134|gb|ELJ45050.1| DNA polymerase III subunit alpha [Escherichia coli KTE176]
 gi|431693357|gb|ELJ58773.1| DNA polymerase III subunit alpha [Escherichia coli KTE179]
 gi|431695166|gb|ELJ60502.1| DNA polymerase III subunit alpha [Escherichia coli KTE180]
 gi|431726652|gb|ELJ90460.1| DNA polymerase III subunit alpha [Escherichia coli KTE94]
 gi|432346618|gb|ELL41099.1| DNA polymerase III subunit alpha [Escherichia coli J96]
          Length = 1160

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|331645327|ref|ZP_08346438.1| DNA polymerase III subunit alpha [Escherichia coli M605]
 gi|417660816|ref|ZP_12310397.1| DNA polymerase 3 alpha subunit [Escherichia coli AA86]
 gi|330910034|gb|EGH38544.1| DNA polymerase 3 alpha subunit [Escherichia coli AA86]
 gi|331046084|gb|EGI18203.1| DNA polymerase III subunit alpha [Escherichia coli M605]
          Length = 1160

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGPAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A + +LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAESRSLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|423106541|ref|ZP_17094242.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5242]
 gi|376377978|gb|EHS90745.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5242]
          Length = 1160

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + ++L +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLLGDELNQLTVLAANNTGYQNLTLLISRAYQRGYGAAGPIIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G   + +     + + FPD +Y+E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNMALVDQCVDFYEQHFPDCYYLELIRTGRQDEEPY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAETRGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPDERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGARKRGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|260853394|ref|YP_003227285.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            11368]
 gi|417295286|ref|ZP_12082539.1| DNA polymerase III, alpha subunit [Escherichia coli 900105 (10e)]
 gi|419213559|ref|ZP_13756594.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC8D]
 gi|419252823|ref|ZP_13795375.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10A]
 gi|419258766|ref|ZP_13801230.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10B]
 gi|419264518|ref|ZP_13806908.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10C]
 gi|419270368|ref|ZP_13812703.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10D]
 gi|419875685|ref|ZP_14397510.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CVM9534]
 gi|419880128|ref|ZP_14401537.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CVM9545]
 gi|419904673|ref|ZP_14423664.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM9942]
 gi|419906028|ref|ZP_14424962.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM10026]
 gi|420100321|ref|ZP_14611501.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CVM9455]
 gi|420105931|ref|ZP_14616363.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CVM9553]
 gi|420113063|ref|ZP_14622828.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM10021]
 gi|420119509|ref|ZP_14628785.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM10030]
 gi|420125514|ref|ZP_14634316.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM10224]
 gi|420132845|ref|ZP_14641148.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM9952]
 gi|424756637|ref|ZP_18184443.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CFSAN001630]
 gi|425376925|ref|ZP_18761357.1| DNA polymerase III subunit alpha [Escherichia coli EC1865]
 gi|257752043|dbj|BAI23545.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
            11368]
 gi|378070174|gb|EHW32257.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC8D]
 gi|378108927|gb|EHW70539.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10A]
 gi|378118788|gb|EHW80290.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10B]
 gi|378120132|gb|EHW81613.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10C]
 gi|378122112|gb|EHW83556.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC10D]
 gi|386260905|gb|EIJ16373.1| DNA polymerase III, alpha subunit [Escherichia coli 900105 (10e)]
 gi|388347903|gb|EIL13550.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CVM9534]
 gi|388367137|gb|EIL30832.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM9942]
 gi|388369936|gb|EIL33502.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CVM9545]
 gi|388379958|gb|EIL42584.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM10026]
 gi|394394939|gb|EJE71455.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM10224]
 gi|394412949|gb|EJE87035.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM10021]
 gi|394417679|gb|EJE91396.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CVM9553]
 gi|394421028|gb|EJE94523.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CVM9455]
 gi|394427705|gb|EJF00358.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM9952]
 gi|394431384|gb|EJF03592.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CVM10030]
 gi|408311126|gb|EKJ28138.1| DNA polymerase III subunit alpha [Escherichia coli EC1865]
 gi|421949559|gb|EKU06493.1| DNA polymerase III subunit alpha [Escherichia coli O111:H11 str.
            CFSAN001630]
          Length = 1160

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G   + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417230432|ref|ZP_12032018.1| DNA polymerase III, alpha subunit [Escherichia coli 5.0959]
 gi|386206922|gb|EII11428.1| DNA polymerase III, alpha subunit [Escherichia coli 5.0959]
          Length = 1160

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLGFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|218688059|ref|YP_002396271.1| DNA polymerase III subunit alpha [Escherichia coli ED1a]
 gi|306815217|ref|ZP_07449366.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
 gi|331661255|ref|ZP_08362187.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
 gi|419912641|ref|ZP_14431089.1| DNA polymerase III subunit alpha [Escherichia coli KD1]
 gi|432384741|ref|ZP_19627654.1| DNA polymerase III subunit alpha [Escherichia coli KTE15]
 gi|432385570|ref|ZP_19628472.1| DNA polymerase III subunit alpha [Escherichia coli KTE16]
 gi|432512382|ref|ZP_19749629.1| DNA polymerase III subunit alpha [Escherichia coli KTE224]
 gi|432609890|ref|ZP_19846066.1| DNA polymerase III subunit alpha [Escherichia coli KTE72]
 gi|432644593|ref|ZP_19880400.1| DNA polymerase III subunit alpha [Escherichia coli KTE86]
 gi|432654227|ref|ZP_19889949.1| DNA polymerase III subunit alpha [Escherichia coli KTE93]
 gi|432697491|ref|ZP_19932667.1| DNA polymerase III subunit alpha [Escherichia coli KTE169]
 gi|432744110|ref|ZP_19978819.1| DNA polymerase III subunit alpha [Escherichia coli KTE43]
 gi|432892760|ref|ZP_20104927.1| DNA polymerase III subunit alpha [Escherichia coli KTE165]
 gi|432902485|ref|ZP_20112233.1| DNA polymerase III subunit alpha [Escherichia coli KTE194]
 gi|432941879|ref|ZP_20139377.1| DNA polymerase III subunit alpha [Escherichia coli KTE183]
 gi|432970321|ref|ZP_20159203.1| DNA polymerase III subunit alpha [Escherichia coli KTE207]
 gi|432983907|ref|ZP_20172649.1| DNA polymerase III subunit alpha [Escherichia coli KTE215]
 gi|433037110|ref|ZP_20224738.1| DNA polymerase III subunit alpha [Escherichia coli KTE113]
 gi|433081089|ref|ZP_20267569.1| DNA polymerase III subunit alpha [Escherichia coli KTE133]
 gi|433099723|ref|ZP_20285844.1| DNA polymerase III subunit alpha [Escherichia coli KTE145]
 gi|433142683|ref|ZP_20327869.1| DNA polymerase III subunit alpha [Escherichia coli KTE168]
 gi|433191506|ref|ZP_20375573.1| DNA polymerase III subunit alpha [Escherichia coli KTE88]
 gi|218425623|emb|CAR06409.1| DNA polymerase III alpha subunit [Escherichia coli ED1a]
 gi|305850879|gb|EFM51334.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
 gi|331052297|gb|EGI24336.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
 gi|388391175|gb|EIL52648.1| DNA polymerase III subunit alpha [Escherichia coli KD1]
 gi|430901964|gb|ELC23860.1| DNA polymerase III subunit alpha [Escherichia coli KTE15]
 gi|430911098|gb|ELC32396.1| DNA polymerase III subunit alpha [Escherichia coli KTE16]
 gi|431045512|gb|ELD55745.1| DNA polymerase III subunit alpha [Escherichia coli KTE224]
 gi|431152521|gb|ELE53472.1| DNA polymerase III subunit alpha [Escherichia coli KTE72]
 gi|431185597|gb|ELE85326.1| DNA polymerase III subunit alpha [Escherichia coli KTE86]
 gi|431196275|gb|ELE95220.1| DNA polymerase III subunit alpha [Escherichia coli KTE93]
 gi|431247680|gb|ELF41901.1| DNA polymerase III subunit alpha [Escherichia coli KTE169]
 gi|431296483|gb|ELF86195.1| DNA polymerase III subunit alpha [Escherichia coli KTE43]
 gi|431426181|gb|ELH08226.1| DNA polymerase III subunit alpha [Escherichia coli KTE165]
 gi|431438614|gb|ELH19988.1| DNA polymerase III subunit alpha [Escherichia coli KTE194]
 gi|431456480|gb|ELH36824.1| DNA polymerase III subunit alpha [Escherichia coli KTE183]
 gi|431487763|gb|ELH67407.1| DNA polymerase III subunit alpha [Escherichia coli KTE207]
 gi|431507973|gb|ELH86255.1| DNA polymerase III subunit alpha [Escherichia coli KTE215]
 gi|431557218|gb|ELI30992.1| DNA polymerase III subunit alpha [Escherichia coli KTE113]
 gi|431607341|gb|ELI76711.1| DNA polymerase III subunit alpha [Escherichia coli KTE133]
 gi|431624046|gb|ELI92670.1| DNA polymerase III subunit alpha [Escherichia coli KTE145]
 gi|431668063|gb|ELJ34639.1| DNA polymerase III subunit alpha [Escherichia coli KTE168]
 gi|431699575|gb|ELJ64580.1| DNA polymerase III subunit alpha [Escherichia coli KTE88]
          Length = 1160

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|420323841|ref|ZP_14825631.1| DNA polymerase III subunit alpha [Shigella flexneri CCH060]
 gi|420351058|ref|ZP_14852261.1| DNA polymerase III subunit alpha [Shigella boydii 4444-74]
 gi|421680904|ref|ZP_16120746.1| DNA polymerase III, &alpha subunit [Shigella flexneri 1485-80]
 gi|391257716|gb|EIQ16826.1| DNA polymerase III subunit alpha [Shigella flexneri CCH060]
 gi|391289892|gb|EIQ48376.1| DNA polymerase III subunit alpha [Shigella boydii 4444-74]
 gi|404342139|gb|EJZ68529.1| DNA polymerase III, &alpha subunit [Shigella flexneri 1485-80]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y    ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYASGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|424066551|ref|ZP_17804015.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. avellanae
            str. ISPaVe013]
 gi|408002150|gb|EKG42413.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. avellanae
            str. ISPaVe013]
          Length = 1173

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSYD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|423111361|ref|ZP_17099055.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5243]
 gi|376376560|gb|EHS89337.1| DNA polymerase III subunit alpha [Klebsiella oxytoca 10-5243]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + S+L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLLGDELSQLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G   + +     +++ FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNMALVDQCVDFYAQHFPDCYFLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVKLAETRGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEERIKRRPEYDERLDVELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|397656072|ref|YP_006496774.1| DNA polymerase III subunit alpha [Klebsiella oxytoca E718]
 gi|394344702|gb|AFN30823.1| DNA polymerase III alpha subunit [Klebsiella oxytoca E718]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + S+L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLLGDELSQLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K   GLI LSG  +GD+G ++  G   + +     + + FPD +++E+ R  + +    
Sbjct: 124  LK--GGLILLSGGRMGDVGRSLLRGNMALVDQCVDFYEQHFPDCYFLELIRTGRQDEEPY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAETRGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPDERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGARKRGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417151664|ref|ZP_11991191.1| DNA polymerase III, alpha subunit [Escherichia coli 1.2264]
 gi|432430345|ref|ZP_19672795.1| DNA polymerase III subunit alpha [Escherichia coli KTE187]
 gi|432469106|ref|ZP_19711169.1| DNA polymerase III subunit alpha [Escherichia coli KTE205]
 gi|432581377|ref|ZP_19817795.1| DNA polymerase III subunit alpha [Escherichia coli KTE57]
 gi|432842446|ref|ZP_20075874.1| DNA polymerase III subunit alpha [Escherichia coli KTE141]
 gi|433071096|ref|ZP_20257813.1| DNA polymerase III subunit alpha [Escherichia coli KTE129]
 gi|433118662|ref|ZP_20304385.1| DNA polymerase III subunit alpha [Escherichia coli KTE157]
 gi|433181626|ref|ZP_20365938.1| DNA polymerase III subunit alpha [Escherichia coli KTE85]
 gi|433206355|ref|ZP_20390064.1| DNA polymerase III subunit alpha [Escherichia coli KTE97]
 gi|386159855|gb|EIH21669.1| DNA polymerase III, alpha subunit [Escherichia coli 1.2264]
 gi|430957651|gb|ELC76303.1| DNA polymerase III subunit alpha [Escherichia coli KTE187]
 gi|430988240|gb|ELD04740.1| DNA polymerase III subunit alpha [Escherichia coli KTE205]
 gi|431123137|gb|ELE25880.1| DNA polymerase III subunit alpha [Escherichia coli KTE57]
 gi|431398214|gb|ELG81637.1| DNA polymerase III subunit alpha [Escherichia coli KTE141]
 gi|431595645|gb|ELI65638.1| DNA polymerase III subunit alpha [Escherichia coli KTE129]
 gi|431650485|gb|ELJ17806.1| DNA polymerase III subunit alpha [Escherichia coli KTE157]
 gi|431712773|gb|ELJ77051.1| DNA polymerase III subunit alpha [Escherichia coli KTE85]
 gi|431733954|gb|ELJ97357.1| DNA polymerase III subunit alpha [Escherichia coli KTE97]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417831286|ref|ZP_12477814.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            01-09591]
 gi|340736155|gb|EGR65205.1| DNA polymerase III subunit alpha [Escherichia coli O104:H4 str.
            01-09591]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+  F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITEFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|432763467|ref|ZP_19997924.1| DNA polymerase III subunit alpha [Escherichia coli KTE48]
 gi|431314542|gb|ELG02494.1| DNA polymerase III subunit alpha [Escherichia coli KTE48]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYSCTV---SGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT    V   +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITGAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|365969096|ref|YP_004950657.1| DNA polymerase III subunit alpha [Enterobacter cloacae EcWSU1]
 gi|365748009|gb|AEW72236.1| DNA polymerase III subunit alpha [Enterobacter cloacae EcWSU1]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + +++ +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFHVQSDLIGDELTQISVLAMNNVGYQNLTLLISKAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  DGL+ +SG  +GD+G  +  G + + +     + + FPD +Y+E+ R  + +    
Sbjct: 122  AELNDGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEHFPDRYYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEERGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  NEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F        +H +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFHV-----NEHGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  Y L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYVGGYRLKDMHPTERGKITTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|170021463|ref|YP_001726417.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 8739]
 gi|169756391|gb|ACA79090.1| DNA polymerase III, alpha subunit [Escherichia coli ATCC 8739]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD++I++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQLIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|302187913|ref|ZP_07264586.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            642]
 gi|424071204|ref|ZP_17808630.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. avellanae
            str. ISPaVe037]
 gi|407999278|gb|EKG39664.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. avellanae
            str. ISPaVe037]
          Length = 1173

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQSGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|170768453|ref|ZP_02902906.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
 gi|170122557|gb|EDS91488.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E    + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQSEPLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+LI ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLIKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y  RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDVRLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W  +  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPDQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY    + +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRTDA-RARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|423709905|ref|ZP_17684259.1| DNA polymerase III subunit alpha [Escherichia coli B799]
 gi|385705123|gb|EIG42190.1| DNA polymerase III subunit alpha [Escherichia coli B799]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|419918927|ref|ZP_14437099.1| DNA polymerase III subunit alpha [Escherichia coli KD2]
 gi|388388998|gb|EIL50541.1| DNA polymerase III subunit alpha [Escherichia coli KD2]
          Length = 1160

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|421728179|ref|ZP_16167334.1| DNA polymerase III subunit alpha [Klebsiella oxytoca M5al]
 gi|410370860|gb|EKP25586.1| DNA polymerase III subunit alpha [Klebsiella oxytoca M5al]
          Length = 1160

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + S+L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSDLLGDELSQLTVLAANNAGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G ++  G   + +     + + FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRSLLRGNMALVDQCVDFYEQHFPDCYFLELIRTGRQDEEPY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVGLAETRGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPDERTKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEGPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGARKRGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|422616491|ref|ZP_16685197.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. japonica
            str. M301072]
 gi|422664965|ref|ZP_16724838.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aptata
            str. DSM 50252]
 gi|440720428|ref|ZP_20900846.1| DNA polymerase III subunit alpha [Pseudomonas syringae BRIP34876]
 gi|440726556|ref|ZP_20906809.1| DNA polymerase III subunit alpha [Pseudomonas syringae BRIP34881]
 gi|330896075|gb|EGH28296.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. japonica
            str. M301072]
 gi|330975384|gb|EGH75450.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aptata
            str. DSM 50252]
 gi|440365953|gb|ELQ03040.1| DNA polymerase III subunit alpha [Pseudomonas syringae BRIP34876]
 gi|440366138|gb|ELQ03223.1| DNA polymerase III subunit alpha [Pseudomonas syringae BRIP34881]
          Length = 1173

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|422651076|ref|ZP_16713875.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. actinidiae
            str. M302091]
 gi|330964158|gb|EGH64418.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. actinidiae
            str. M302091]
          Length = 1173

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I++  +   PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPAEADELLREWLTVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+ +T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY--KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L      E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLMPGDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A+++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLDIAFIPLDDL 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSYDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVHADALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|308048684|ref|YP_003912250.1| DNA polymerase III subunit alpha [Ferrimonas balearica DSM 9799]
 gi|307630874|gb|ADN75176.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
          Length = 1165

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1165 (42%), Positives = 741/1165 (63%), Gaps = 41/1165 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY  A+  GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLAKVGPLLKRVAELGMPAVALTDQTNLCGLVKFYSGAHGSGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+ + ++  + SRL++L  NN GY  L EL+S+AY+      R  I  EWLE+
Sbjct: 64   PIIGADFWMLSPLQGDEQSRLVVLAMNNTGYANLTELISRAYLRGHVDHRPVIDREWLEE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LSGA  G++G A+  G   +A   A  +   FPD +Y+E+ R  + +    
Sbjct: 124  --LGEGLILLSGAKDGELGKALVKGNLAMAREIASFYQTHFPDRYYVELHRTGRADDESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   ++ A  + LP+VAT+ + FL+K +F  HE+R CI +G  L + +R + ++++Q  +
Sbjct: 182  LHSAVDFADEMGLPLVATNEVVFLQKEDFEFHEIRVCIHDGYPLDDARRPRLYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QN++EIAKRCN+ +  G+  LP FPT  ++ I DFL+  S+ GL
Sbjct: 242  SEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPDFPT-GDLKIEDFLVKVSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE    ++  Y +RL+ E+E I  M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDPEERAAKRPAYDERLKIELEVINNMGFPGYFLIVMEFIQWSKDNNIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++  +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHTAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  +RDVGRVL   + F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPFGFVDRISKLIPGDPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEVR LI++A+++EG  RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PQLQEVYDGDEEVRTLIDIARKLEGTTRNAGKHAGGVVIAPTKITDFAPLYCDDEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+   +  +             +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMLNPALEAKGKAPVRIESIPLDDPRSFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+++ T AVFQLES+GMK ++   KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRSETTAVFQLESRGMKELISRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDETWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++KTH+
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S+FMAA +S  MD+T+K+  LV D     GL +LPP++N   Y F     +  + ++I 
Sbjct: 779  PSYFMAAVMSADMDNTDKVVTLV-DECNRMGLPVLPPDVNQGLYKF-----NVNEKEEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  ++ I+  R + G F +LFDF  R+D K +NRR I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPVDEILAARERGGKFLDLFDFCNRVDLKKVNRRTIEKLILAGAMDNLG 892

Query: 892  EK-------RYMLVASIDVALKNAEKTKKFINQL--SLFKNDDNNNLKEYLNYVKVPSWS 942
             +       R  L+A+++ A+K+A +  + + Q    LF        + + ++VKV  WS
Sbjct: 893  PRLPDGAPHRASLMATLEEAMKSAAQNARNLAQGMDDLFGTLTPEPEQAHHSFVKVAPWS 952

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLK 999
             K+ L  E++ LG  L+ H    Y  E+++F    L ++ PT    +   +G++   ++ 
Sbjct: 953  DKEWLDGERETLGLYLTGHPINQYLKELKKFTAGRLKDVSPTGRGKTTRAAGLVIASRIM 1012

Query: 1000 TTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
             T RG K+ I  +DD S  +EV++  +  EK +++L  + +L+V G+V  D+F    +++
Sbjct: 1013 ITKRGSKMGIFTLDDKSGRLEVMLFAEGVEKYQDLLTTDRVLVVEGEVSFDQFSGGNKLS 1072

Query: 1059 AEKIFDINVARILYGKKFSVMFNRTFNISIL---KKILLRFKCKNGLPF-VLYYCINKSI 1114
            A+++ DI  AR  Y +   +  ++  + +      K LL+     G P  + Y   +   
Sbjct: 1073 AKEVLDIGQARERYARALILTLDQQQSDAARLDSLKALLKEHGAGGCPVQIQYQRPDAHG 1132

Query: 1115 KYEMKFPLNYKVQPIDDLKLALINL 1139
             +E+  P  Y+V P D+L   L  L
Sbjct: 1133 VFELGDP--YRVVPTDELLSGLKKL 1155


>gi|298157169|gb|EFH98257.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1173

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1190 (42%), Positives = 737/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPDRFYIEVQRTNRNNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|417621415|ref|ZP_12271746.1| DNA polymerase III subunit alpha [Escherichia coli STEC_H.1.8]
 gi|345387177|gb|EGX17005.1| DNA polymerase III subunit alpha [Escherichia coli STEC_H.1.8]
          Length = 1160

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPQIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417606114|ref|ZP_12256647.1| DNA polymerase III subunit alpha [Escherichia coli STEC_DG131-3]
 gi|345366282|gb|EGW98374.1| DNA polymerase III subunit alpha [Escherichia coli STEC_DG131-3]
          Length = 1160

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LYAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|432812334|ref|ZP_20046184.1| DNA polymerase III subunit alpha [Escherichia coli KTE101]
 gi|431358437|gb|ELG45095.1| DNA polymerase III subunit alpha [Escherichia coli KTE101]
          Length = 1160

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGCDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|82775574|ref|YP_401921.1| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197]
 gi|81239722|gb|ABB60432.1| DNA polymerase III, alpha subunit [Shigella dysenteriae Sd197]
          Length = 1160

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEDMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVSLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|254448006|ref|ZP_05061470.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015]
 gi|198262432|gb|EDY86713.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015]
          Length = 1175

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1181 (42%), Positives = 739/1181 (62%), Gaps = 56/1181 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++D ++RI  +I  AA    PALA+TD  NLF ++KF+ +A   G
Sbjct: 1    MSSSFVHLRLHTEYSLVDSVVRIKPLISTAAEQGMPALALTDQCNLFAMVKFFGAASAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IK + G D+ + NE   K  + LLLL  ++ GY  L EL+S+AY E    G   I   WL
Sbjct: 61   IKALFGADLLVRNEDPKKPSTVLLLLAMDDVGYRNLTELVSQAYTEGQAGGLPVIERTWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E     +GLIALSG   GDIG A+    ++        + + FP+ FY+E+QR  +    
Sbjct: 121  EGRT--EGLIALSGGPWGDIGRAIAFNHHEQIPPLLAFYKQHFPNRFYLELQRTGREGEA 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
               +  +++A+   LP+VAT+ ++F+   +F +HEVR CI EG +L + +R + ++ EQ 
Sbjct: 179  LYNETAVSLAAEHQLPVVATNDVRFIHADDFDSHEVRVCIHEGRLLDDPRRSRHYSPEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM++LF D+P AI+NT+EIAKRCN+    G+  LP +P P    I+ F   +S+ 
Sbjct: 239  LRSPEEMVELFSDLPEAIENTLEIAKRCNVAPHMGEYFLPDYPVPDGETIDSFFRKQSQE 298

Query: 301  GLKKRLLNLYKDPEIYKCEK--LRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ R+  L +D      E     Y+ RL+ EI  I+ M F GYFLIV+DFIQWAKNN +
Sbjct: 299  GLEWRMEKLQRDTGTTWDEAKVQSYRDRLEREIGVILNMGFPGYFLIVADFIQWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC EGRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPIEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV  +YG+D VSQI+T+G+MAAK  +RDVGRVL   Y F D I+KLIP + G  ITLS A
Sbjct: 419  YVAQKYGRDQVSQIITYGSMAAKAVVRDVGRVLGHGYGFVDGIAKLIPMEVG--ITLSQA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            ++E  +L +R + +EEV  L+++A ++EG+ RN G HAGGV+IAPSKL +F PLY +EG 
Sbjct: 477  LEESEELKQRYEEDEEVTNLLDMALKLEGLSRNAGKHAGGVVIAPSKLTDFTPLYCEEGG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPL 593
             G+++Q+DKDD+E IGL+KFDFLGL TL+I++   + +K+IN++          ++ +PL
Sbjct: 537  GGLVTQFDKDDVEAIGLVKFDFLGLRTLTIIN---WALKEINSRLEAAGHPLLDIDAIPL 593

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNF 651
            +D  T++LLK   T AVFQLES GMKN++K+ +PD FE+I+AL++L+RPGP+D  ++ +F
Sbjct: 594  DDAPTFDLLKAQQTTAVFQLESSGMKNLIKKLQPDSFEDIVALVALFRPGPLDSGMVDDF 653

Query: 652  CRRKHGE-YFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
             RRKHG+   +YP P       K VL  TYGI++YQEQVMQIAQ++GGYSLG ADLLRRA
Sbjct: 654  IRRKHGQDEVSYPHPDYQYDGLKPVLEPTYGIILYQEQVMQIAQVMGGYSLGGADLLRRA 713

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM + ++ F  G    G+    A  IF+ +EKFAGYGFNKSH+ AYAL+SY T
Sbjct: 714  MGKKKLEEMAKQKEVFLKGCGDNGIDLSLAENIFDLVEKFAGYGFNKSHSAAYALVSYQT 773

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
            A+LK HY S FMAA LS   D+T+K+  L+++  +  GL+ILPP++N S Y F   ++ D
Sbjct: 774  AWLKAHYPSAFMAAVLSADSDNTDKVVNLIEEC-RNMGLTILPPDVNSSAYKF--TMQDD 830

Query: 826  GKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINS 884
               K IRYGLGA+KG G+  IEAI  ER+  G + +L DF +RID + +NRR+  +LI  
Sbjct: 831  ---KTIRYGLGALKGVGQGVIEAINEEREANGDYADLLDFCRRIDGRKLNRRVTEALIRG 887

Query: 885  GAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWS 942
            GA D     R  L+A++  AL  A + +K     Q+ +F   D++N    ++   +  W 
Sbjct: 888  GALDSIGPNRASLMAALGDALMAASQHQKNQATGQVDIFGALDHSNEMASVDVPLIKEWH 947

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYL-SELKP----------------TY 985
            +  +L  E+ VLG  L+ H F  +  E+       L S ++                   
Sbjct: 948  EDDKLRAERDVLGLYLTGHPFNRFARELSAITHKNLHSHVEAVEAQESASRGDDFRARAI 1007

Query: 986  SCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSG 1044
            S TV+G++ +++ K    G ++LI+ +DD ++ V++ +  ++ ++  + + ++ +LI  G
Sbjct: 1008 SATVAGLVVDVQSKRFGNGNELLIVTLDDRTDRVDLTLRGEVLQEYADKVVKDAVLIADG 1067

Query: 1045 KVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN-RTFNISILKKILLRFKCKNG-- 1101
            ++ +DRF    ++  +++  I+  R    K+  +  N +  +   + K+ +      G  
Sbjct: 1068 RLSKDRFNGGAQMRVDRLMSIDEVRSHRVKRLDLFVNGQARHPDFVTKLAVALDSYKGGQ 1127

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQP----IDDLKLALIN 1138
             P V++Y         ++F   + + P    I+DL+  L N
Sbjct: 1128 CPVVVHYRYGDMAWVPVEFDAQWSIAPRETLIEDLRDLLGN 1168


>gi|401762378|ref|YP_006577385.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ENHKU01]
 gi|400173912|gb|AFP68761.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ENHKU01]
          Length = 1160

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1154 (43%), Positives = 738/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D  + +++   + +++ +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PVVGADFHVQSDLIGDELTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ +SG  +GD+G  +  G + + +     + + FPD +Y+E+ R  + +    
Sbjct: 122  AELNEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEERGLPVVATNDVRFLESGDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGEHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYIKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  +
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   ++V P D L
Sbjct: 1129 RFGATWRVSPSDRL 1142


>gi|443644989|ref|ZP_21128839.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. syringae
            B64]
 gi|443285006|gb|ELS44011.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. syringae
            B64]
          Length = 1173

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRPHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|339493533|ref|YP_004713826.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri ATCC 17588 =
            LMG 11199]
 gi|386020197|ref|YP_005938221.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 4166]
 gi|327480169|gb|AEA83479.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 4166]
 gi|338800905|gb|AEJ04737.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri ATCC 17588 =
            LMG 11199]
          Length = 1173

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1187 (42%), Positives = 737/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SRL LL  N  GY  L EL+S+ + E        I  EW+
Sbjct: 61   IKPICGADIWLAGCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +GLIALSGA  G+IG A+ NG   +A +    W ++F D FY+E+QR  + N  
Sbjct: 121  KEAA--EGLIALSGAKEGEIGHALLNGDEALAASRLAEWREVFADRFYLEVQRTNRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FLK+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF D+P A++NT+EIAKRCN++++ G   LP FP P+ + I+D+L   S  
Sbjct: 239  LKTPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ +K  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +  +E+ R++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             H+ S FMAA LS  M +T+K+ IL+++  ++  L I PP++N+S++ F   +  DG   
Sbjct: 777  AHHPSPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVNVSEFKF--TVNDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGA+KG G+  +EAI   R + G F +LFDF  RID K IN+R + +LI SGA D
Sbjct: 831  RIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFI--NQLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +      + LF          
Sbjct: 891  RLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTV 989
             Y N+      S K+ L  EK  LG  L+ H    YE EIR+F    + +L+P     T+
Sbjct: 951  VYANHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLRPARGEQTI 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  I +DD S  +E  +  + +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFNSAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   V          LK   +R+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVAG----EALKGERMRWLAEVCGRHRGAC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y      +  ++F  ++++ P D+L  AL +  G  N  ++Y
Sbjct: 1127 PITLEYT-GHDARALLQFGEDWRIDPADNLIQALRDQFGRDNVFLQY 1172


>gi|194435013|ref|ZP_03067254.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
 gi|194416749|gb|EDX32877.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
          Length = 1160

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+  +K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKSAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|66044606|ref|YP_234447.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            B728a]
 gi|63255313|gb|AAY36409.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1173

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 738/1190 (62%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|432552222|ref|ZP_19788956.1| DNA polymerase III subunit alpha [Escherichia coli KTE47]
 gi|431087921|gb|ELD93842.1| DNA polymerase III subunit alpha [Escherichia coli KTE47]
          Length = 1160

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I  G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHNGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMYELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|26246130|ref|NP_752169.1| DNA polymerase III subunit alpha [Escherichia coli CFT073]
 gi|227884903|ref|ZP_04002708.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
 gi|386627706|ref|YP_006147426.1| DNA polymerase III subunit alpha [Escherichia coli str. 'clone D i2']
 gi|386632626|ref|YP_006152345.1| DNA polymerase III subunit alpha [Escherichia coli str. 'clone D
            i14']
 gi|386637542|ref|YP_006104340.1| DNA polymerase III subunit alpha [Escherichia coli ABU 83972]
 gi|416895532|ref|ZP_11925433.1| DNA polymerase III subunit alpha [Escherichia coli STEC_7v]
 gi|417112212|ref|ZP_11964335.1| DNA polymerase III, alpha subunit [Escherichia coli 1.2741]
 gi|422802500|ref|ZP_16850993.1| DNA polymerase III [Escherichia coli M863]
 gi|432434733|ref|ZP_19677144.1| DNA polymerase III subunit alpha [Escherichia coli KTE188]
 gi|432454962|ref|ZP_19697174.1| DNA polymerase III subunit alpha [Escherichia coli KTE201]
 gi|432494012|ref|ZP_19735834.1| DNA polymerase III subunit alpha [Escherichia coli KTE214]
 gi|432510417|ref|ZP_19749277.1| DNA polymerase III subunit alpha [Escherichia coli KTE220]
 gi|432522326|ref|ZP_19759471.1| DNA polymerase III subunit alpha [Escherichia coli KTE230]
 gi|432567057|ref|ZP_19803589.1| DNA polymerase III subunit alpha [Escherichia coli KTE53]
 gi|432591187|ref|ZP_19827520.1| DNA polymerase III subunit alpha [Escherichia coli KTE60]
 gi|432606050|ref|ZP_19842250.1| DNA polymerase III subunit alpha [Escherichia coli KTE67]
 gi|432649554|ref|ZP_19885324.1| DNA polymerase III subunit alpha [Escherichia coli KTE87]
 gi|432782072|ref|ZP_20016259.1| DNA polymerase III subunit alpha [Escherichia coli KTE63]
 gi|432976889|ref|ZP_20165716.1| DNA polymerase III subunit alpha [Escherichia coli KTE209]
 gi|432993941|ref|ZP_20182562.1| DNA polymerase III subunit alpha [Escherichia coli KTE218]
 gi|432998359|ref|ZP_20186909.1| DNA polymerase III subunit alpha [Escherichia coli KTE223]
 gi|433056510|ref|ZP_20243611.1| DNA polymerase III subunit alpha [Escherichia coli KTE124]
 gi|433085836|ref|ZP_20272246.1| DNA polymerase III subunit alpha [Escherichia coli KTE137]
 gi|433114121|ref|ZP_20299946.1| DNA polymerase III subunit alpha [Escherichia coli KTE153]
 gi|433123782|ref|ZP_20309381.1| DNA polymerase III subunit alpha [Escherichia coli KTE160]
 gi|433137851|ref|ZP_20323145.1| DNA polymerase III subunit alpha [Escherichia coli KTE167]
 gi|433147603|ref|ZP_20332690.1| DNA polymerase III subunit alpha [Escherichia coli KTE174]
 gi|433211103|ref|ZP_20394727.1| DNA polymerase III subunit alpha [Escherichia coli KTE99]
 gi|442607284|ref|ZP_21022061.1| DNA polymerase III alpha subunit [Escherichia coli Nissle 1917]
 gi|81846737|sp|Q8FL05.1|DPO3A_ECOL6 RecName: Full=DNA polymerase III subunit alpha
 gi|26106527|gb|AAN78713.1|AE016755_213 DNA polymerase III alpha subunit [Escherichia coli CFT073]
 gi|227838041|gb|EEJ48507.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
 gi|307552034|gb|ADN44809.1| DNA polymerase III alpha subunit [Escherichia coli ABU 83972]
 gi|323964923|gb|EGB60389.1| DNA polymerase III [Escherichia coli M863]
 gi|327255163|gb|EGE66766.1| DNA polymerase III subunit alpha [Escherichia coli STEC_7v]
 gi|355418605|gb|AER82802.1| DNA polymerase III subunit alpha [Escherichia coli str. 'clone D i2']
 gi|355423525|gb|AER87721.1| DNA polymerase III subunit alpha [Escherichia coli str. 'clone D
            i14']
 gi|386142996|gb|EIG84132.1| DNA polymerase III, alpha subunit [Escherichia coli 1.2741]
 gi|430968218|gb|ELC85451.1| DNA polymerase III subunit alpha [Escherichia coli KTE188]
 gi|430986895|gb|ELD03461.1| DNA polymerase III subunit alpha [Escherichia coli KTE201]
 gi|431029786|gb|ELD42817.1| DNA polymerase III subunit alpha [Escherichia coli KTE214]
 gi|431032560|gb|ELD45270.1| DNA polymerase III subunit alpha [Escherichia coli KTE220]
 gi|431055666|gb|ELD65205.1| DNA polymerase III subunit alpha [Escherichia coli KTE230]
 gi|431103636|gb|ELE08279.1| DNA polymerase III subunit alpha [Escherichia coli KTE53]
 gi|431133748|gb|ELE35715.1| DNA polymerase III subunit alpha [Escherichia coli KTE60]
 gi|431142318|gb|ELE44068.1| DNA polymerase III subunit alpha [Escherichia coli KTE67]
 gi|431194840|gb|ELE94055.1| DNA polymerase III subunit alpha [Escherichia coli KTE87]
 gi|431332965|gb|ELG20186.1| DNA polymerase III subunit alpha [Escherichia coli KTE63]
 gi|431483847|gb|ELH63536.1| DNA polymerase III subunit alpha [Escherichia coli KTE209]
 gi|431511679|gb|ELH89810.1| DNA polymerase III subunit alpha [Escherichia coli KTE218]
 gi|431516170|gb|ELH93784.1| DNA polymerase III subunit alpha [Escherichia coli KTE223]
 gi|431575450|gb|ELI48185.1| DNA polymerase III subunit alpha [Escherichia coli KTE124]
 gi|431610739|gb|ELI80024.1| DNA polymerase III subunit alpha [Escherichia coli KTE137]
 gi|431637648|gb|ELJ05703.1| DNA polymerase III subunit alpha [Escherichia coli KTE153]
 gi|431650994|gb|ELJ18301.1| DNA polymerase III subunit alpha [Escherichia coli KTE160]
 gi|431665884|gb|ELJ32593.1| DNA polymerase III subunit alpha [Escherichia coli KTE167]
 gi|431679266|gb|ELJ45179.1| DNA polymerase III subunit alpha [Escherichia coli KTE174]
 gi|431736526|gb|ELJ99851.1| DNA polymerase III subunit alpha [Escherichia coli KTE99]
 gi|441711424|emb|CCQ08038.1| DNA polymerase III alpha subunit [Escherichia coli Nissle 1917]
          Length = 1160

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|110640403|ref|YP_668131.1| DNA polymerase III subunit alpha [Escherichia coli 536]
 gi|110341995|gb|ABG68232.1| DNA polymerase III alpha subunit [Escherichia coli 536]
          Length = 1160

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E R++VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKREQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|345297958|ref|YP_004827316.1| DNA polymerase III subunit alpha [Enterobacter asburiae LF7a]
 gi|345091895|gb|AEN63531.1| DNA polymerase III, alpha subunit [Enterobacter asburiae LF7a]
          Length = 1160

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1154 (43%), Positives = 736/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + +++ +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSELLGDEMTQITVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                DGL+ +SG  +GD+G ++  G + + +     + + FPD +Y+E+ R  + +    
Sbjct: 124  --LNDGLLLISGGRMGDVGQSLLRGNSALVDQCIAFYEEYFPDRYYLELIRTGRADEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEERGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  NEDEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVVKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  + K ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRGTFEEGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F        +H 
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFHV-----NEHG 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEQSYSNCQPWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPI-YLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYIKEIERYVGGNRLKDMHPTDRGKITTAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  +
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   ++V P D L
Sbjct: 1129 RFGATWRVSPSDRL 1142


>gi|416282273|ref|ZP_11646346.1| DNA polymerase III alpha subunit [Shigella boydii ATCC 9905]
 gi|320180909|gb|EFW55831.1| DNA polymerase III alpha subunit [Shigella boydii ATCC 9905]
          Length = 1160

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHSV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A +  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGNALKAAGQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|440744187|ref|ZP_20923491.1| DNA polymerase III subunit alpha [Pseudomonas syringae BRIP39023]
 gi|440374201|gb|ELQ10937.1| DNA polymerase III subunit alpha [Pseudomonas syringae BRIP39023]
          Length = 1173

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 737/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+  +  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|311280847|ref|YP_003943078.1| DNA polymerase III subunit alpha [Enterobacter cloacae SCF1]
 gi|308750042|gb|ADO49794.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
          Length = 1160

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1154 (43%), Positives = 736/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + N++   + S+L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIVGADFHVQNDLLGDEMSQLTVLAANNTGYQNLTLLISRAYQRGYGAQGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G   + E  A  + + FPD +++E+ R  + +    
Sbjct: 122  VELNEGLILLSGGRMGDVGKSLLRGNAALVEQCAAFYEEHFPDRYFLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVKLAEERGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT   +   DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GEMTTEDFLVVKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D    K ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDESGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRRAKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPITQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++  +  +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTEALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  +
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   ++V P D L
Sbjct: 1129 RFGATWRVSPSDRL 1142


>gi|419304692|ref|ZP_13846609.1| DNA polymerase III subunit alpha [Escherichia coli DEC11D]
 gi|419309726|ref|ZP_13851605.1| DNA polymerase III subunit alpha [Escherichia coli DEC11E]
 gi|378154346|gb|EHX15422.1| DNA polymerase III subunit alpha [Escherichia coli DEC11D]
 gi|378161935|gb|EHX22904.1| DNA polymerase III subunit alpha [Escherichia coli DEC11E]
          Length = 1160

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM + F DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCEQFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|432396039|ref|ZP_19638832.1| DNA polymerase III subunit alpha [Escherichia coli KTE25]
 gi|432405072|ref|ZP_19647796.1| DNA polymerase III subunit alpha [Escherichia coli KTE28]
 gi|432721785|ref|ZP_19956714.1| DNA polymerase III subunit alpha [Escherichia coli KTE17]
 gi|432726195|ref|ZP_19961084.1| DNA polymerase III subunit alpha [Escherichia coli KTE18]
 gi|432739963|ref|ZP_19974686.1| DNA polymerase III subunit alpha [Escherichia coli KTE23]
 gi|432989129|ref|ZP_20177802.1| DNA polymerase III subunit alpha [Escherichia coli KTE217]
 gi|433109364|ref|ZP_20295248.1| DNA polymerase III subunit alpha [Escherichia coli KTE150]
 gi|430919061|gb|ELC40012.1| DNA polymerase III subunit alpha [Escherichia coli KTE25]
 gi|430933297|gb|ELC53708.1| DNA polymerase III subunit alpha [Escherichia coli KTE28]
 gi|431268998|gb|ELF60359.1| DNA polymerase III subunit alpha [Escherichia coli KTE17]
 gi|431277443|gb|ELF68457.1| DNA polymerase III subunit alpha [Escherichia coli KTE18]
 gi|431287335|gb|ELF78153.1| DNA polymerase III subunit alpha [Escherichia coli KTE23]
 gi|431500029|gb|ELH79046.1| DNA polymerase III subunit alpha [Escherichia coli KTE217]
 gi|431633526|gb|ELJ01806.1| DNA polymerase III subunit alpha [Escherichia coli KTE150]
          Length = 1160

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGPAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     +   FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEVHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|354598867|ref|ZP_09016884.1| DNA polymerase III, alpha subunit [Brenneria sp. EniD312]
 gi|353676802|gb|EHD22835.1| DNA polymerase III, alpha subunit [Brenneria sp. EniD312]
          Length = 1160

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1152 (43%), Positives = 731/1152 (63%), Gaps = 35/1152 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA+   PALAITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAASLGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL-E 121
            PIIG DV++ +E    + + L LL  +N GY  L  L+S AY          I   WL E
Sbjct: 64   PIIGADVYVASEELGDELAHLTLLAMDNEGYQNLTLLISHAYQRGYGAEGPTIDRHWLIE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            KN    GL+ LSG   GD+G  +  G    AE     + + FPD +Y+E+ R  +P+   
Sbjct: 124  KNS---GLLLLSGGRNGDVGKFMLRGNQTQAEQCLAFYQQYFPDRYYLELIRTGRPDEES 180

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +   + +A+   LP+VAT+ ++F+ + +F AHE+R  I +G  L + KR + ++ +Q  
Sbjct: 181  YLHAAVELATRYGLPVVATNDVRFISEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYM 240

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            +T+ EM +LF DIP  + N++EIAKRCN+ +  G+  LP+FPT  ++   D+L+ ++K G
Sbjct: 241  RTEEEMCQLFADIPEGLANSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDYLVKRAKEG 299

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L++RL  L+ DP+    ++L Y +RL  E++ I +M F GYFLIV +FIQW+K+N++PVG
Sbjct: 300  LEERLEFLFPDPQERAQKRLEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNNVPVG 359

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V 
Sbjct: 360  PGRGSGAGSLVAYSLKITDLDPLQFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVA 419

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            D YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   
Sbjct: 420  DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAA 477

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EPQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        
Sbjct: 478  EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHP 537

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTY 599
            ++Q+DK D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+DK ++
Sbjct: 538  VTQFDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDIASIPLDDKKSF 597

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG 657
            ++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG
Sbjct: 598  DMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 658  -EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
             E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK  
Sbjct: 658  REAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNP 717

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK H
Sbjct: 718  VEMAKQRGGFEDGAKSRGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I
Sbjct: 778  YPAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EI 831

Query: 832  RYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
             YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD  
Sbjct: 832  VYGIGAIKGVGEGPIEAIIEARNQDGYFKELFDLCARTDIKKLNRRVLEKLIMSGAFDRL 891

Query: 891  NEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
               R  L+ S+  ALK A++  K   I Q+ +F    +   +   +Y  V  W ++  L 
Sbjct: 892  GPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVAPWPEQVVLD 951

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
             E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG
Sbjct: 952  GERETLGLYLTGHPITQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRG 1011

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I +  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ 
Sbjct: 1012 NRIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELM 1071

Query: 1064 DINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKF 1120
            DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F
Sbjct: 1072 DISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVNLYYQ-REDARARLRF 1130

Query: 1121 PLNYKVQPIDDL 1132
               +++ P D L
Sbjct: 1131 GAAWRITPTDAL 1142


>gi|429330776|ref|ZP_19211558.1| DNA polymerase III subunit alpha [Pseudomonas putida CSV86]
 gi|428764556|gb|EKX86689.1| DNA polymerase III subunit alpha [Pseudomonas putida CSV86]
          Length = 1174

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1186 (41%), Positives = 740/1186 (62%), Gaps = 51/1186 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+RI  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MSASFVHLRLHTEFSLVDGLVRIKPLAKALAGMNMPAVAVTDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+  +      +R+  LV +  GY  L EL+S+ + +    G   I+ EW+
Sbjct: 61   IKPICGADLWLAGDDPEAPLARICFLVMDAKGYRNLTELISRGWTDGQRNGLVVIQREWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLIALS A  GDIG+A+ NG    AE   + W  +FPD FY+E+QR  +    
Sbjct: 121  AEAA--EGLIALSAAKEGDIGMALMNGNEAEAEALLQDWMAMFPDRFYVEVQRTNRAGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  +  P+VAT+ ++F+K+++F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVALADRLGAPLVATNDVRFIKQSDFDAHETRVCIGEGRALDDPRRSRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN+ ++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSPEEMAELFSDLPEALENSVEIAKRCNITVQLGKYFLPDFPTPNGMGIDDYLRHVSHE 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +
Sbjct: 299  GLEERLAVLWPKETTPDYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RIS+PDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISLPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +E+ +++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E  
Sbjct: 477  YEQEEMLRDFLKTDEDAKEIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKAGLPDVNIDFIPLDDR 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  KTYELLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YP P       K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHPDYQYDGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G +  G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCVNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTH+ + FMAA LS  M +T+K+ IL+++ +++  L +  P++N S + F   + +DG  
Sbjct: 777  KTHHPAAFMAAVLSADMHNTDKVVILIEE-VRSMKLRLDAPDVNFSDFKF--TVNNDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YGLGAIKG G+  +EAI+  R  G  F +LFDF  R+D K IN+R +++L+ SGA 
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAIMEARAAGGPFNDLFDFCARVDLKRINKRTLDALVRSGAL 890

Query: 888  DCF---------------NEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNL 929
            D                 +  R +L+++++ A+K+AE+T +  +     LF    D  + 
Sbjct: 891  DRLGPFFHDEIKAYQANIDRNRAVLLSAMEEAIKSAEQTARTHDSGHSDLFGGLFDEPDA 950

Query: 930  KEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-T 988
              Y N+ K    + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP     T
Sbjct: 951  DVYANHRKARELTLKERLRGEKDTLGLYLTGHPIDEYEGEIRRFARQRIVDLKPARDTQT 1010

Query: 989  VSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047
            V+G+I  L++    +G K+  + +DD S  +E  +    +  ++ +L+ + +++V G+V 
Sbjct: 1011 VAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMASQALLQNDAMVVVEGEVS 1070

Query: 1048 EDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLP 1103
             D F   +R+  +++  +  AR        +  +    +   ++ L  +L R   +   P
Sbjct: 1071 NDDFSGGLRLRVKRVMSMEDARTNLADSLRLKLHADALKGDRLAWLGDLLKRH--RGACP 1128

Query: 1104 FVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
              + Y      K +++F  ++++ P D L  AL +  G  N  + Y
Sbjct: 1129 VSMEYT-GSDAKAQLQFGEDWRIDPADGLIQALRDQFGRENVFLHY 1173


>gi|416274861|ref|ZP_11643822.1| DNA polymerase III alpha subunit [Shigella dysenteriae CDC 74-1112]
 gi|320173335|gb|EFW48538.1| DNA polymerase III alpha subunit [Shigella dysenteriae CDC 74-1112]
          Length = 1160

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMA+K  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y    ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYASGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVYPSDRL 1142


>gi|420345283|ref|ZP_14846717.1| DNA polymerase III subunit alpha [Shigella boydii 965-58]
 gi|391276690|gb|EIQ35455.1| DNA polymerase III subunit alpha [Shigella boydii 965-58]
          Length = 1160

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRAHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+  +K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKSAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|213969133|ref|ZP_03397272.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|301383972|ref|ZP_07232390.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            Max13]
 gi|302064142|ref|ZP_07255683.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            K40]
 gi|213926131|gb|EEB59687.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1173

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1190 (41%), Positives = 737/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I++  +   PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+ + +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY--KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L      E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A+++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLDIAFIPLDDL 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVHTDALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|424746724|ref|ZP_18174946.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CFSAN001629]
 gi|421947741|gb|EKU04804.1| DNA polymerase III subunit alpha [Escherichia coli O26:H11 str.
            CFSAN001629]
          Length = 1160

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G   + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++   D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADTDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|28868755|ref|NP_791374.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28851994|gb|AAO55069.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            str. DC3000]
          Length = 1173

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1190 (41%), Positives = 737/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I++  +   PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLTVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+ + +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY--KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L      E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A+++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLDIAFIPLDDL 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVHADALKGERLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|71733672|ref|YP_275963.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|257487067|ref|ZP_05641108.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            str. ATCC 11528]
 gi|289626019|ref|ZP_06458973.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. NCPPB 3681]
 gi|289651464|ref|ZP_06482807.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 2250]
 gi|416018055|ref|ZP_11565056.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. B076]
 gi|416025740|ref|ZP_11569388.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
 gi|422583730|ref|ZP_16658850.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 0893_23]
 gi|422679951|ref|ZP_16738224.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            str. ATCC 11528]
 gi|71554225|gb|AAZ33436.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|320323105|gb|EFW79194.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. B076]
 gi|320329623|gb|EFW85612.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
 gi|330868557|gb|EGH03266.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 0893_23]
 gi|331009298|gb|EGH89354.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            str. ATCC 11528]
          Length = 1173

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 737/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FP+ FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRTNRNNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|432410186|ref|ZP_19652873.1| DNA polymerase III subunit alpha [Escherichia coli KTE39]
 gi|430938905|gb|ELC59130.1| DNA polymerase III subunit alpha [Escherichia coli KTE39]
          Length = 1160

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+V T+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVTTNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|389798380|ref|ZP_10201397.1| DNA polymerase III subunit alpha [Rhodanobacter sp. 116-2]
 gi|388444988|gb|EIM01076.1| DNA polymerase III subunit alpha [Rhodanobacter sp. 116-2]
          Length = 1197

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1093 (45%), Positives = 688/1093 (62%), Gaps = 61/1093 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  ++ HL LHSEYS++D  +RI  ++ A   D  PALA+TD SN+F ++KFYK+    G
Sbjct: 19   MTVRYTHLHLHSEYSLVDSTIRIKALVAACVRDGIPALALTDDSNMFALVKFYKACSAAG 78

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI GCD+W+    ++ +P RL LL ++  GYL L  L+S+A+ E  + GRA +   WL
Sbjct: 79   IKPIGGCDLWMAAP-DDPRPWRLTLLCQHRAGYLNLSRLVSRAWQEGQHGGRALVEAGWL 137

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
              +   DGLIAL G    ++G    N  N+ A    R  +++FP+  Y+E+ R  +    
Sbjct: 138  TADA-SDGLIALLGRE-SEVGRLALNQGNEAALAKLRPLARLFPERLYLELTRCGREGEE 195

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
                  + +A+ + LP++A++ ++FL + +F AHE R CI +G +L++ KR + ++ +Q 
Sbjct: 196  AWNTAALALAAELGLPVLASNDVRFLTQNDFGAHEARVCIQQGRVLADPKRPRDYSDQQY 255

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM  LF D+P A++NT+E+AKRC L+L+FG   LP FP P   +++  +   ++ 
Sbjct: 256  LKTPEEMAALFADLPEALENTVELAKRCTLELKFGTYYLPDFPVPAGHDLDSHIRELARQ 315

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GLK+RL N    P         Y+ RL+ E++ I+KM F GYFLIV+DFI W K N IPV
Sbjct: 316  GLKERLANA---PLAADHTLADYQARLERELDVIVKMGFPGYFLIVADFINWGKQNGIPV 372

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVA++L ITD+DPL +NLLFERFLNP R+SMPDFDIDFC + RD VI YV
Sbjct: 373  GPGRGSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYV 432

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI- 479
              +YG+D VSQI+T+G+MAAK  +RD GRVL   Y+  D I+KLIP +P  L TLS A+ 
Sbjct: 433  ARKYGRDRVSQIITYGSMAAKAVLRDSGRVLGFGYTQVDRIAKLIPARPLDL-TLSCALG 491

Query: 480  -----KEEP-----QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
                 K+EP     +  E  + +EE R LI+LA ++E + RN G HAGGV+IAPS L +F
Sbjct: 492  RSEKAKKEPERVVKEFCELYEQDEEARALIDLALKLENLTRNAGKHAGGVVIAPSPLTDF 551

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN---- 585
             PLY + G  G+++QYDKDD+E +GL+KFDFLGL TL+I+D   + +K IN +       
Sbjct: 552  APLYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIID---WAVKAINARRAKAGEA 608

Query: 586  -FSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGP 644
               ++ LPL+D  +Y LLKKA TVAVFQLES GM+ MLK+AKPD FE+IIAL++LYRPGP
Sbjct: 609  LLDISALPLDDPASYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGP 668

Query: 645  MDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLR 703
            MDLI +F  RKHG E   YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLR
Sbjct: 669  MDLIPSFVARKHGREDVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLR 728

Query: 704  RAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763
            RA+GKKK  EM + R  F+ GA K GLS  KA+ IF+ +EKFAGYGFNKSHA AYAL+SY
Sbjct: 729  RAMGKKKLEEMAKERAKFREGAAKDGLSGEKADSIFDLMEKFAGYGFNKSHAAAYALVSY 788

Query: 764  YTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE 823
             TA+LK HY + FMAA +S  MD+T+K+   + D  +  G+++ PP++N S+Y F  +  
Sbjct: 789  QTAWLKAHYPAEFMAATISSDMDNTDKVVTFL-DESRAIGIAVQPPDVNASEYMFVAV-- 845

Query: 824  SDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883
               + K I+YGLGAIKG G+   EAIV ER  G + +L DF +R+D   +NRR++ +LI 
Sbjct: 846  ---EPKVIQYGLGAIKGVGQGACEAIVAERANGRYADLADFCRRVDPTRLNRRVLEALIL 902

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEY-LNYVKVPS 940
            SGA D     R  L+  +  A+K AE+    +   Q  +F     N      +    VP 
Sbjct: 903  SGALDALAANRASLMLQLPDAIKAAEQHLRDRQSGQNDMFGAAMGNATPVLKIELPTVPE 962

Query: 941  WSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK------------------ 982
            W  +Q+L  E+  LG  LS H    ++ E+ Q     L E+                   
Sbjct: 963  WPLEQKLQGERDTLGHYLSGHPTDPWKDELAQLSSCPLGEIADRYQPPKPRKNDHDDGNR 1022

Query: 983  ----PTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENE 1038
                P    TV+G++T ++ +         + ++D S  +EV    +LY++   +L  +E
Sbjct: 1023 FRRGPDTPWTVAGMVTAVRKRGDSDA---FVRLEDGSGIIEVSFFGELYQQMAPLLTRDE 1079

Query: 1039 LLIVSGKVLEDRF 1051
            +L+V G +  D F
Sbjct: 1080 MLVVDGGLRIDDF 1092


>gi|418020371|ref|ZP_12659651.1| DNA-directed DNA polymerase III [Candidatus Regiella insecticola
            R5.15]
 gi|347604276|gb|EGY28962.1| DNA-directed DNA polymerase III [Candidatus Regiella insecticola
            R5.15]
          Length = 1160

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1159 (44%), Positives = 746/1159 (64%), Gaps = 35/1159 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL + + +++ AA+   PALAITD +NL G+IKFY SA   GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSTLVKKAASLGMPALAITDFTNLCGLIKFYSSAQAAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +++   + ++L +L +N  GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIIGADFYLQSKLLGDELAQLTILARNQQGYQNLTLLISKAYQRGYGASGPLIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              + +GLI LSG   GD+G  +  G           + + F DN+Y+E+ R  +P+    
Sbjct: 122  ITHSEGLILLSGGRSGDVGKFMLRGNQAQMLECLAFYQQYFADNYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            ++  I +AS  ++P+VAT+ ++F+  ++F AHE+R  I +G  L++TKR K ++ +Q  +
Sbjct: 182  LRGAIALASQHDIPVVATNDVRFIDASDFDAHEIRVAIHDGATLADTKRPKNYSPQQFMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM +LF DIP A+ N+IEIAKRCNL +  G+  LP+FPT   ++  DF   K++ GL
Sbjct: 242  NEQEMCELFSDIPEALTNSIEIAKRCNLSIRLGEYFLPQFPT-GAMSTEDFFAEKAQLGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D    K ++  Y +RL  EI+ I +M F+GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDVNTKKQKRAAYDERLNVEIKVINQMGFAGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL+++LLFERFLNP RISMPDFDIDFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDIDFCMEKRDQVIEHVAN 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D I+KLIP   G  +TL  A   E
Sbjct: 421  IYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPLDVG--MTLEKAFVAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLAELYQADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++ T+  I  ++ +    +  +  +PL+DK ++ 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWTLVMINAQRASKGLPSIDITTIPLDDKKSFA 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRAETTAVFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EALSYPDIQWQHELLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKDPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+NGA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRSIFENGAKQQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMA  ++  MD+T+K+  +V D     GL +L P+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAGVMTADMDNTDKLVGMV-DECTRMGLKVLRPDINSGSYHFN--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGAIKG G+  I AI+  R   G+F NLFD   R + K +NRR++  LI SGAFD   
Sbjct: 833  YGLGAIKGVGEGPITAILNARNVDGYFKNLFDLCARTETKKLNRRVLEKLILSGAFDHLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y  +  W ++  L  
Sbjct: 893  PHRASLMHSLEAALKAADQHAKAEAIGQKDMFGVLTEAPEQVEHSYANIAPWQQQIVLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  E+ ++   I L +L  T    + TV+G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKELERYSGGIRLKDLHVTERGKTTTVAGLVIAARVIVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++  +  EK +++L+++ +LI +G+V  D F   +++N  ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTETLEKYQHLLEKDRILIATGQVSVDDFNGGLKMNVREVMD 1072

Query: 1065 INVARILY--GKKFSVMFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
            IN AR  +  G   S+M N+  N   L ++  LL+  C   +P  +YY  + + + +++ 
Sbjct: 1073 INQAREKHACGLAISLMHNK-INDQFLNRLRQLLQPHCSGTIPVHIYYQCSDA-RAKLRL 1130

Query: 1121 PLNYKVQPIDDLKLALINL 1139
               +++ P + L + L  L
Sbjct: 1131 GATWRITPTERLLIDLRTL 1149


>gi|300724779|ref|YP_003714104.1| DNA polymerase III subunit alpha [Xenorhabdus nematophila ATCC 19061]
 gi|297631321|emb|CBJ92016.1| DNA polymerase III, alpha subunit [Xenorhabdus nematophila ATCC
            19061]
          Length = 1160

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1147 (43%), Positives = 736/1147 (64%), Gaps = 33/1147 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++  A    PA AITD +NL G++KFY SA++ GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKVAKLGMPAFAITDFTNLCGLVKFYGSAHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +++   + + L +L  NN GY  L  L+S++Y +        I+ EWLEK
Sbjct: 64   PIIGADFYVESDLLGDEYAHLTVLACNNEGYQNLTLLISESYQKGYGAVGPTIKREWLEK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  GLI LSG  +GD+G  +  G   + E     + + FP+++Y+E+ R  + +    
Sbjct: 124  --YSAGLILLSGGRMGDVGKFLLRGNRAMVEQCLDFYQEHFPNSYYLELIRTGRLDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  NLP+VAT+ + FL+  +F AHE+R  I +G  +++ KR K ++ +Q  +
Sbjct: 182  LHAAVELAAEKNLPVVATNDVCFLESEDFDAHEIRVAIHDGYTMADPKRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QN++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEQEMCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVEKSKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  LY DPEI   ++  Y  RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLYPDPEIRAQKRPEYDDRLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP RISMPDFD+DFC E RD+VI +V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F P+Y        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPIYCDPEGQNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  +  ++         +  +PL+D+ +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRAKKDLEPIDIAAIPLDDQKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK+  
Sbjct: 659  EEISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+IK G++   + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEAGSIKQGVNGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G F  LFD   R+D K INRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARQKAGHFKELFDLCARVDTKKINRRVMEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S++ A K A++  K     Q  +F        +    Y   P W  +  L  
Sbjct: 893  PHRAALMSSLEDAFKAADQHAKAEATGQTDMFGVLAEKPEQVEHAYASTPKWPDQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      TV G++   K+ TT RG 
Sbjct: 953  ERETLGLYLTGHPITSYLKEIERYTNGMRLKDVNPTPRGQVTTVVGLVLASKILTTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +E+++ +   E+ +++L ++++LI +G+V  D F   +++   ++ D
Sbjct: 1013 RIGISTLDDRSGRLEIMLFSDALERYQHLLVQDKILIATGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  + +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 ISEAREKFARGLAISLSDRQIDEQLLNRLRGALEPHRSGTIPVHLYYQ-RVDARARLRFG 1131

Query: 1122 LNYKVQP 1128
              ++V P
Sbjct: 1132 ATWRVTP 1138


>gi|401677355|ref|ZP_10809330.1| DNA-directed DNA polymerase III alpha subunit [Enterobacter sp. SST3]
 gi|400215203|gb|EJO46114.1| DNA-directed DNA polymerase III alpha subunit [Enterobacter sp. SST3]
          Length = 1160

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1151 (43%), Positives = 739/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +++   + +++ +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFHVQSDLIGDELTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ +SG  +GD+G ++  G + + +     + + FP+ +Y+E+ R  + +    
Sbjct: 122  AELNEGLLLISGGRMGDVGKSLLRGNSALVDQCVSFYEEYFPNRYYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEERGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I     K     L+   +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYIKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|261338818|ref|ZP_05966676.1| hypothetical protein ENTCAN_05013 [Enterobacter cancerogenus ATCC
            35316]
 gi|288318641|gb|EFC57579.1| DNA polymerase III, alpha subunit [Enterobacter cancerogenus ATCC
            35316]
          Length = 1160

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1154 (43%), Positives = 737/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGVGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + +++ +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFHVQSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGAQGPWIDRDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ +SG  +GD+G  +  G + + +     + + FPD +Y+E+ R  + +    
Sbjct: 124  --LNEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEHFPDRYYLELIRTGRADEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEQRGLPVVATNDVRFLESGDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  TEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVVKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D    K ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F        +H 
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFHV-----NEHG 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPI-YLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYIKEIERYVGGNRLKDMHPTDRGKITTAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  +
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   ++V P D L
Sbjct: 1129 RFGAAWRVSPSDRL 1142


>gi|422594818|ref|ZP_16669108.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans
            str. M301315]
 gi|330985125|gb|EGH83228.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans
            str. M301315]
          Length = 1173

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 736/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FP+ FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRTNRNNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+  +  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEDPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|146310386|ref|YP_001175460.1| DNA polymerase III subunit alpha [Enterobacter sp. 638]
 gi|145317262|gb|ABP59409.1| DNA polymerase III, alpha subunit [Enterobacter sp. 638]
          Length = 1160

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1156 (43%), Positives = 739/1156 (63%), Gaps = 43/1156 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAAHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + +++ +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIIGADFHVQSELLGDEMTQISVLAMNNTGYQNLTLLISRAYQRGYGAAGPWIDRDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GL+ +SG  +GD+G ++  G N + E     + + FPD FY+E+ R  +P+    
Sbjct: 124  --LNEGLLLISGGRMGDVGKSLIRGNNVLVEQCVAFYEEHFPDRFYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEQRGLPVVATNDVRFINAEDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIA+RCN+ +  G+  LP+FPT   ++  DFL+ KSK GL
Sbjct: 242  SEDEMCELFADIPEALENSVEIARRCNVTVRLGEYFLPQFPT-GEMSTEDFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ D      ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EDRLEFLFPDEAERNEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDESGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRRAKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDVQWQHDCLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRGTFEDGAKKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINAGMYHFH--VNDDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAILEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKK 944
                 R  L+ S+  ALK A++  K   I Q  +F    D+   +++  +Y     W + 
Sbjct: 890  RLGPHRAALMNSLGEALKAADQHAKAEAIGQADMFGVLADEPEQIEQ--SYANCQPWPEH 947

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPI-YLSELKPTYS---CTVSGIITELKLKT 1000
              L  E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  
Sbjct: 948  TVLEGERETLGLYLTGHPINQYLKEIERYVGGNRLKDMHPTERGKMTTAAGLVIAARVMV 1007

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T RG +I I  +DD S  +EV++  +  EK +++L+ + +LIVSG+V  D F   +++ A
Sbjct: 1008 TKRGNRIGICTLDDRSGRLEVMLFTEALEKYQHLLENDRILIVSGQVSFDDFSGGLKMMA 1067

Query: 1060 EKIFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKY 1116
             ++ DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + 
Sbjct: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARA 1126

Query: 1117 EMKFPLNYKVQPIDDL 1132
             ++F   ++V P D L
Sbjct: 1127 RLRFGATWRVSPSDRL 1142


>gi|213865541|ref|ZP_03387660.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. M223]
          Length = 1093

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1085 (45%), Positives = 707/1085 (65%), Gaps = 29/1085 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVAR 1069
            I+ AR
Sbjct: 1073 IDEAR 1077


>gi|242240381|ref|YP_002988562.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech703]
 gi|242132438|gb|ACS86740.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech703]
          Length = 1160

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1151 (43%), Positives = 734/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA    PA+AITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E    + +RL +L  NN+GY  L  L+S+AY          I  EWL  
Sbjct: 64   PIIGADFYLQSEELGDELARLSVLAMNNDGYQNLTLLISRAYQRGYGAAGPTIEREWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q GL+ LSG   GDIG  +  G   + +     + + FP  FY+E+ R  +P+    
Sbjct: 122  VEHQAGLLLLSGGRQGDIGKFLLRGNQTLVDQCVAFYQQHFPQRFYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ + F+ + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAVVALATERGLPVVATNDVCFISEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   D+L+ +++ GL
Sbjct: 242  SEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDYLVLRAREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D E     +  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N++PVGP
Sbjct: 301  EERLVFLFPDEEERANRRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNNVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RD VI +V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLGEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I     K       +  +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINPRREKQGLEPVDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV +  +  GL ILPP+IN   Y+F   +   G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVGLVDECWR-MGLKILPPDINSGLYHFH--VNDAG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F +LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  A+K+AE+  +   I Q  +F     +  +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLPDAMKSAEQHARAEAIGQSDMFGVLTESPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYSCTVS---GIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++     L ++ PT    V+   G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYAGGGRLKDMHPTERGKVTIAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +R+ A ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLRMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY + +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYY-LREDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPTDGL 1142


>gi|429082355|ref|ZP_19145429.1| DNA polymerase III alpha subunit [Cronobacter condimenti 1330]
 gi|426548908|emb|CCJ71470.1| DNA polymerase III alpha subunit [Cronobacter condimenti 1330]
          Length = 1160

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 731/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PA AITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +  E+     S + +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNMQCELLGDDFSHITVLAANNTGYQNLTLLISRAYQRGYGAAGPWIDQQWLAD 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LSG   GD+G  +  G   +AE     + + FPD +Y E+ R  +P+    
Sbjct: 124  --LGEGLILLSGGRQGDVGKCLLRGNTVMAEQALAFYQEHFPDRYYFELVRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ ++F++  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIA+RCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  TEDEMCELFSDIPEALENSVEIARRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+    ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPQERAQKRPAYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     +
Sbjct: 479  PQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDEMGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALDMINARRAKQGLEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFEDGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEQSYANCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G+I   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIDRYVGGMRLKDMHPTERGKLTTAAGLIISARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPNDRL 1142


>gi|254428613|ref|ZP_05042320.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            sp. DG881]
 gi|196194782|gb|EDX89741.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            sp. DG881]
          Length = 1166

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1108 (43%), Positives = 719/1108 (64%), Gaps = 47/1108 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLRLH++YS++DG++R+ ++I+   N   PA+A+TD SNLF +IKFY++A N GIK
Sbjct: 4    PRFVHLRLHTDYSLVDGVVRVKELIKTCVNQQIPAVAVTDDSNLFALIKFYQNAMNAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D+W+      ++P+ L  LV N  GY  L  L+S+A+  N + GRA ++ EW+ +
Sbjct: 64   PLMGADLWVQG-THIEEPACLSFLVLNEAGYQNLTLLISRAWQTNQDRGRALVKPEWVAE 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +GLI LS A  G++G  +   + ++A+ +A   + ++ D FY+E+QR  +P     
Sbjct: 123  --LNEGLIVLSAASQGEVGQLLLAEKYELAQQYASWLASVYGDRFYLEVQRTSRPGDEDC 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A  + LP+VAT+ ++FL++ +F AHE R CI +G  L + +R KK+++EQ  K
Sbjct: 181  LHASVTLAGQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRRPKKYSEEQYLK 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF D+P A++NT+EIA+RC L +  G+  LP FP P  + I  +    S  GL
Sbjct: 241  SAEEMAELFADLPEALENTVEIARRCTLDIRLGENFLPDFPIPDGMTIEQYFEKVSSDGL 300

Query: 303  KKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            ++RL + L KD   Y  ++  Y  RL+FE++ I +M F GYFLIV+DFIQW K+N +PVG
Sbjct: 301  EERLKVLLDKDDPEYAIKRKDYDDRLRFELDIINQMGFPGYFLIVADFIQWGKDNEVPVG 360

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY++ ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E RDRVI YV 
Sbjct: 361  PGRGSGAGSLVAYAMKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDRVINYVA 420

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            D+YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP  PG  +TL+ A+++
Sbjct: 421  DKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGIPG--MTLTKALEQ 478

Query: 482  EPQLAERIKNEE-----EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQE 536
            E  L E ++++E        +++E+A ++EG+ RNVG HAGGV+IAP KL +F PLY +E
Sbjct: 479  EETLREFLESDENSDKDAANEIMEMAFKLEGLTRNVGKHAGGVVIAPGKLTDFAPLYCEE 538

Query: 537  GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL----- 591
              T +++QYDKDD+E  GL+KFDFLGL TL+I+D   + +K  N K     L+ L     
Sbjct: 539  DGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIID---WAVKAANVKRGREGLDDLVIDHI 595

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIK 649
            PL+D  +++LLK+ +T AVFQLESQGMK ++K+ +PD FE+IIAL++LYRPGP++  ++ 
Sbjct: 596  PLDDGPSFDLLKRGDTTAVFQLESQGMKELIKKLQPDVFEDIIALVALYRPGPLESGMVD 655

Query: 650  NFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLR 703
            NF  RKHG E   YPDP+      + +L  +YG+++YQEQVMQIAQ L GY+LG AD+LR
Sbjct: 656  NFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGYTLGGADMLR 715

Query: 704  RAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763
            RA+GKKK  EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL++Y
Sbjct: 716  RAMGKKKPEEMAKQRAIFEEGAKGKGVDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVAY 775

Query: 764  YTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE 823
             TA+LK HY + FMAA +S  M +T+K+   + D  KT GL +LPP++N   Y F    E
Sbjct: 776  QTAWLKVHYPAEFMAATISADMQNTDKVVTFI-DECKTMGLQVLPPDVNSCGYRFTVNPE 834

Query: 824  SDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLI 882
             D     I YGLGAIKG G+  I+AIV+ R   G F +LFDF +RID K INRR + +++
Sbjct: 835  GD-----IVYGLGAIKGLGEGPIDAIVSARADGGEFKDLFDFCRRIDLKKINRRSLEAMV 889

Query: 883  NSGAFDCFNEK-----RYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNY 935
             +G  D    K     R  L+A++  A+  A++  +      + +F   D++     + +
Sbjct: 890  RAGVLDKLGPKSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAVDDSPATA-VEW 948

Query: 936  VKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGI 992
                +W+ +  L  E+  LG  L+ H    YE E+RQF+   ++ L+PT    + T++G+
Sbjct: 949  KPARAWNDETRLNGERDTLGLFLTGHPIDQYEKEVRQFVTARINSLQPTGKGEAATIAGL 1008

Query: 993  ITELKLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050
            +  L++  + R   ++  I +DD +  VEV +  + + +   +++++ LLI  G V  D 
Sbjct: 1009 VVALRITRSKRSGDRMAFITLDDKTGRVEVSVFGKTFAEYGELVQKDTLLIFKGGVRNDE 1068

Query: 1051 FLKNIRINAEKIFDINVARILYGKKFSV 1078
            +     + A++I D+  AR  + ++  V
Sbjct: 1069 YTGGFNLVADEIMDMRQARETFARRLRV 1096


>gi|422608982|ref|ZP_16680941.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. mori str.
            301020]
 gi|330894609|gb|EGH27270.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. mori str.
            301020]
          Length = 1173

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1190 (42%), Positives = 736/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+ +TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVGVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  G +KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGRVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|419955760|ref|ZP_14471883.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri TS44]
 gi|387967460|gb|EIK51762.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri TS44]
          Length = 1173

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1187 (42%), Positives = 738/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  +I+A A+   PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MSVSFVHLRLHTEFSLVDGLVRVKPLIKAVASAGMPAVAVTDQSNMCSLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI G D+W+ +  E+   SRL LL  +  GY  L EL+S+ + E        I  +W+
Sbjct: 61   VKPICGADIWLASREEDGPLSRLTLLAMDAKGYRNLTELVSRGWTEGQRNDLVIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +G+IALSGA  G+IG A+ NG   +AE   + WS +F   FY+E+QR  + N  
Sbjct: 121  KDAA--EGVIALSGAKEGEIGQALLNGDEGLAEALLKEWSAVFAGRFYLEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FL++ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVALAGRCGAPLVATNDVRFLRQEDFEAHETRVCIGEGRTLDDPRRPRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF D+P A++NT+EIAKRCN++++ G   LP FP P  + I+D+L   S  
Sbjct: 239  LKTPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPAGMTIDDYLRQVSYE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y  +K  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYATKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEAYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +  +E+ R++ ++A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLAVDEDGREIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDKD 597
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+   +  I +   K    ++N   +PL+DK 
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEAVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG       + +Y     + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEISYPHSDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCANNGIDGELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            THY S FMAA LS  M +T+K+ IL+++  ++  L I PP++N+S++ F   +  DG   
Sbjct: 777  THYPSPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVNVSEFKF--TVNDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGA+KG G+  +EAI   R  G  F +LFDF  R+D K IN+R + +LI SGA D
Sbjct: 831  RIVYGLGAVKGVGEGPVEAIAECRAAGGPFKDLFDFCSRVDLKRINKRTLEALIRSGALD 890

Query: 889  ----CFNEK-----------RYMLVASIDVALKNAEKTKKF--INQLSLFKND-DNNNLK 930
                 F+E+           R +L+A+++ A++ AE+T +      + LF          
Sbjct: 891  RLGPYFHEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSEESGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ K    S K+ L  EK  LG  L+ H    YE E+R+F    + +L+P     T+
Sbjct: 951  VYANHRKARELSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVDLRPARDTQTI 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  I +DD S  +E  +  + +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFSSAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   V          LK   +R+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVAS----EALKGDRMRWLAEVFGRHRGAC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y      +  ++F  N+++ P D+L  AL +  G  N  ++Y
Sbjct: 1127 PITLEYT-GPDARALLQFGENWRIDPADNLIQALRDQFGRDNVFLQY 1172


>gi|352086322|ref|ZP_08953863.1| DNA polymerase III, alpha subunit [Rhodanobacter sp. 2APBS1]
 gi|351679621|gb|EHA62758.1| DNA polymerase III, alpha subunit [Rhodanobacter sp. 2APBS1]
          Length = 1197

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1093 (45%), Positives = 688/1093 (62%), Gaps = 61/1093 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  ++ HL LHSEYS++D  +RI  ++ A   D  PALA+TD SN+F ++KFYK+    G
Sbjct: 19   MTVRYTHLHLHSEYSLVDSTIRIKALVAACVRDGIPALALTDDSNMFALVKFYKACSAAG 78

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI GCD+W+    ++ +P RL LL ++  GYL L  L+S+A+ E  + GRA +   WL
Sbjct: 79   IKPIGGCDLWMAAP-DDPRPWRLTLLCQHRAGYLNLSRLVSRAWQEGQHGGRALVEAGWL 137

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
              +   DGLIAL G    ++G    N  N+ A    R  +++FP+  Y+E+ R  +    
Sbjct: 138  SVDA-SDGLIALLGRE-SEVGRLALNQGNEAALAKLRPLAQLFPERLYLELTRCGREGEE 195

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
                  + +A+ + LP++A++ ++FL + +F AHE R CI +G +L++ KR + ++ +Q 
Sbjct: 196  AWNTAALALAAELGLPVLASNDVRFLTQNDFGAHEARVCIQQGRVLADPKRPRDYSDQQY 255

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM  LF D+P A++NT+E+AKRC L+L+FG   LP FP P   +++  +   ++ 
Sbjct: 256  LKTPEEMAALFADLPEALENTVELAKRCTLELKFGTYYLPDFPVPAGHDLDSHIRELARQ 315

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GLK+RL N    P         Y+ RL+ E++ I+KM F GYFLIV+DFI W K N IPV
Sbjct: 316  GLKERLANA---PLAADHTLADYQARLERELDVIVKMGFPGYFLIVADFINWGKQNGIPV 372

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVA++L ITD+DPL +NLLFERFLNP R+SMPDFDIDFC + RD VI YV
Sbjct: 373  GPGRGSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYV 432

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI- 479
              +YG+D VSQI+T+G+MAAK  +RD GRVL   Y+  D I+KLIP +P  L TLS A+ 
Sbjct: 433  ARKYGRDRVSQIITYGSMAAKAVLRDSGRVLGFGYTQVDRIAKLIPARPLDL-TLSCALG 491

Query: 480  -----KEEP-----QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
                 K+EP     +  E  + +EE R LI+LA ++E + RN G HAGGV+IAPS L +F
Sbjct: 492  RSEKAKKEPERVVKEFCELYEQDEEARALIDLALKLENLTRNAGKHAGGVVIAPSPLTDF 551

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN---- 585
             PLY + G  G+++QYDKDD+E +GL+KFDFLGL TL+I+D   + +K IN +       
Sbjct: 552  APLYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIID---WAVKAINARRAKAGEA 608

Query: 586  -FSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGP 644
               ++ LPL+D  +Y LLKKA TVAVFQLES GM+ MLK+AKPD FE+IIAL++LYRPGP
Sbjct: 609  LLDISALPLDDPASYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGP 668

Query: 645  MDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLR 703
            MDLI +F  RKHG E   YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLR
Sbjct: 669  MDLIPSFVARKHGREDVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLR 728

Query: 704  RAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763
            RA+GKKK  EM + R  F+ GA K GLS  KA+ IF+ +EKFAGYGFNKSHA AYAL+SY
Sbjct: 729  RAMGKKKLEEMAKERAKFREGAAKDGLSGEKADSIFDLMEKFAGYGFNKSHAAAYALVSY 788

Query: 764  YTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE 823
             TA+LK HY + FMAA +S  MD+T+K+   + D  +  G+++ PP++N S+Y F  +  
Sbjct: 789  QTAWLKAHYPAEFMAATISSDMDNTDKVVTFL-DESRAIGIAVQPPDVNASEYMFVAV-- 845

Query: 824  SDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883
               + K I+YGLGAIKG G+   EAIV ER  G + +L DF +R+D   +NRR++ +LI 
Sbjct: 846  ---EPKVIQYGLGAIKGVGQGACEAIVAERANGRYADLADFCRRVDPTRLNRRVLEALIL 902

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEY-LNYVKVPS 940
            SGA D     R  L+  +  A+K AE+    +   Q  +F     N      +    VP 
Sbjct: 903  SGALDALAANRASLMLQLPDAIKAAEQHLRDRQSGQNDMFGAAMGNATPVLKIELPTVPE 962

Query: 941  WSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK------------------ 982
            W  +Q+L  E+  LG  LS H    ++ E+ Q     L E+                   
Sbjct: 963  WPLEQKLQGERDTLGHYLSGHPTDPWKDELAQLSSCPLGEIADRYQPPKPRKNDHDDGNR 1022

Query: 983  ----PTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENE 1038
                P    TV+G++T ++ +         + ++D S  +EV    +LY++   +L  +E
Sbjct: 1023 FRRGPDTPWTVAGMVTAVRKRGDSDA---FVRLEDGSGIIEVSFFGELYQQMAPLLTRDE 1079

Query: 1039 LLIVSGKVLEDRF 1051
            +L+V G +  D F
Sbjct: 1080 MLVVDGGLRIDDF 1092


>gi|419219398|ref|ZP_13762359.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC8E]
 gi|378073904|gb|EHW35949.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC8E]
          Length = 1160

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    L +VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLLVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|422671205|ref|ZP_16730571.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aceris
            str. M302273]
 gi|330968945|gb|EGH69011.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aceris
            str. M302273]
          Length = 1173

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1190 (42%), Positives = 737/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W ++FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+ +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPG +   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGLLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +TNK+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTNKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T     LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVRAEALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|409393678|ref|ZP_11244978.1| DNA polymerase III subunit alpha [Pseudomonas sp. Chol1]
 gi|409393821|ref|ZP_11245104.1| DNA polymerase III subunit alpha [Pseudomonas sp. Chol1]
 gi|409121659|gb|EKM97725.1| DNA polymerase III subunit alpha [Pseudomonas sp. Chol1]
 gi|409121820|gb|EKM97882.1| DNA polymerase III subunit alpha [Pseudomonas sp. Chol1]
          Length = 1173

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1187 (42%), Positives = 737/1187 (62%), Gaps = 54/1187 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+E+S++DGL+R+  + +A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MSVSFVHLRLHTEFSLVDGLVRVKPLTKAVAGAGMPAVAVTDQSNMCSLVKFYKAAQGGG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+ +  E+   SRL LL  N  GY  L EL+S+ + E        I  +W+
Sbjct: 61   IKPICGADIWLASREEDGPLSRLTLLAMNAKGYRNLTELVSRGWTEGQRNDLVVIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             KN  + GLIALSGA  G+IG A+ N    +AE   + WS +F + FY+E+QR  + N  
Sbjct: 121  -KNAAE-GLIALSGAKEGEIGQALLNADEGLAEALLQEWSAVFAERFYLEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++FL++ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYLHAAVALAERCGAPLVATNDVRFLRQEDFEAHETRVCIGEGRTLDDPRRPRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF D+P A++NT+EIAKRCN++++ G   LP FP P  + I+D+L   S  
Sbjct: 239  LKTPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPAGMTIDDYLRQVSYE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y  +K  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYAAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEAYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +  +E+ R++ ++A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLAVDEDAREIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E+ GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPVNIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCANNGIDAELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY S FMAA LS  M +T+K+ IL+++  ++  L I PP++++S++ F   +  DG   
Sbjct: 777  AHYPSPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVSVSEFKF--TVNDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGA+KG G+  +EAI   R  G  F +LFDF  R+D + IN+R + +LI SGA D
Sbjct: 831  RIVYGLGAVKGVGEGPVEAIAECRAAGGPFKDLFDFCSRVDLRRINKRTLEALIRSGALD 890

Query: 889  ----CFNEK-----------RYMLVASIDVALKNAEKTKKF--INQLSLFKND-DNNNLK 930
                 F+E+           R +L+A+++ A++ AE+T +      + LF          
Sbjct: 891  RLGPYFHEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSEESGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ K    S K+ L  EK  LG  L+ H    YE E+R+F    + +L+P     TV
Sbjct: 951  VYANHRKARELSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVDLRPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  I +DD S  +E  +  + +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFNTAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
            D F   +R+ A+++  +  AR    +   V          LK   +R+      + +   
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVAS----DALKGDRMRWLADVFGRHRGAC 1126

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            P  L Y      +  ++F  N+++ P D+L  AL +  G  N  ++Y
Sbjct: 1127 PITLEYT-GADARALLQFGENWRIDPADNLIQALRDQFGRDNVFLQY 1172


>gi|354721552|ref|ZP_09035767.1| DNA polymerase III subunit alpha [Enterobacter mori LMG 25706]
          Length = 1160

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1154 (43%), Positives = 738/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+ DGL +   +++ AA    PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMSDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + +++ +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFHVQSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGAMGPWIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GL+ +SG  +GD+G  +  G + + +     + + FPD +Y+E+ R  + +    
Sbjct: 122  AELNEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEERGLPVVATNDVRFLEAGDFDAHEMRVAIHDGFTLDDPKRPRNYSSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  NEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVVKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  + K ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRGTFEEGARKNGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYIKEIERYVGGHRLKDMHPTDRGKITTAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  +
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   ++V P D L
Sbjct: 1129 RFGATWRVSPSDRL 1142


>gi|381394710|ref|ZP_09920422.1| DNA polymerase III subunit alpha [Glaciecola punicea DSM 14233 = ACAM
            611]
 gi|379329677|dbj|GAB55555.1| DNA polymerase III subunit alpha [Glaciecola punicea DSM 14233 = ACAM
            611]
          Length = 1166

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1183 (42%), Positives = 753/1183 (63%), Gaps = 51/1183 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLHS++S+ DGL ++  ++EA+ N     LA+TDL N+ G++KFY +A  KG
Sbjct: 1    MTSNFVHLRLHSDFSMQDGLNKVKPILEASQNAGSKTLALTDLMNMCGLVKFYSAAKEKG 60

Query: 61   IKPIIGCDVWITNEI--ENKKPSR----------LLLLVKNNNGYLQLCELLSKAYIENI 108
            IKP++GCD+++ NE    NK  SR          + LL  N  GY  +   +S AY++  
Sbjct: 61   IKPLVGCDIYLLNESLSTNKSASRADSKDSQIVQVCLLAMNEKGYRNITNCISDAYLQGH 120

Query: 109  NYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
               +  +  + L K  Y +G+I LSGA  GD+GIA+ +G+  I ++    + K F D FY
Sbjct: 121  IQHKVVVTQDILAK--YSEGVIVLSGAMDGDVGIAIASGKEKIMQDVLSFYQKHFADRFY 178

Query: 169  IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
            IE+QR      N  IQ+ + +A+  +LP+VAT+ ++FL   +F AHEVR CI+EG  L +
Sbjct: 179  IELQRTGHIGQNSYIQEAVALAAKNDLPVVATNNVRFLNSDDFEAHEVRVCISEGFTLDD 238

Query: 229  TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNI 288
            T+R+K++T +Q  +T  EMI LF DIP AI+N++EIAKRCN+KL  G+  LP FPT  ++
Sbjct: 239  TRRVKRYTNQQYLRTPQEMISLFSDIPEAIENSVEIAKRCNVKLTLGEYFLPNFPT-GDM 297

Query: 289  NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSD 348
             + +FL+ +S+ GL++RL  L+ D  +   ++  Y  RL+ E++ I +M F GYFLIV +
Sbjct: 298  TVGEFLVKESELGLERRLAFLFPDEAVRLEKRPEYDDRLKIELKVINQMGFPGYFLIVME 357

Query: 349  FIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDF 408
            FIQW+K+N+IPVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFDIDF
Sbjct: 358  FIQWSKDNNIPVGPGRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDF 417

Query: 409  CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468
            C + RD VI +V + YG+DAVSQI+TFGT+AAK  IRDVGRV+   Y F D ISK+IP +
Sbjct: 418  CMDRRDEVIDHVAEIYGRDAVSQIITFGTLAAKAVIRDVGRVMSHPYGFVDRISKMIPGE 477

Query: 469  PGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLIN 528
            PG  +TL+ A + EP+L    + +E+V++LI++A+ +EG+ RN G HAGGV+I+P+ + +
Sbjct: 478  PG--MTLAKAFEVEPRLPALYEQDEDVKELIDMARILEGVTRNAGKHAGGVVISPTTITD 535

Query: 529  FCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL 588
            F PLY  +     ++Q+DK+D+E  GL+KFDFLGL TL+I+   I  ++++  K     +
Sbjct: 536  FSPLYCDDTGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIQNAIDMVQEV--KGIEIDI 593

Query: 589  NKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD-- 646
              LPL+DK +++LLK+A T AVFQLES+GMK+++K   PD FEEIIAL++L+RPGP+   
Sbjct: 594  ATLPLDDKKSFSLLKRAETTAVFQLESRGMKDLIKRLTPDVFEEIIALVALFRPGPLQSG 653

Query: 647  LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQAD 700
            ++ NF  RKHG E  ++PD        +++L  TYGI++YQEQVMQIAQ++ GYSLG AD
Sbjct: 654  MVDNFIDRKHGREAVSFPDATYQHACLQEILEPTYGIILYQEQVMQIAQVMSGYSLGAAD 713

Query: 701  LLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYAL 760
            LLRRA+GKK   EM + R FF+ GAI   +  + A +IF+ +EKFAGYGFNKSH+ AYAL
Sbjct: 714  LLRRAMGKKNLQEMEKQRSFFKQGAIDNDIDPNLAMKIFDLVEKFAGYGFNKSHSAAYAL 773

Query: 761  LSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFP 820
            +SY T +LK HY S FMAA LS  MD+T K+  L+ D     G+ +LPP++N  ++ F  
Sbjct: 774  VSYQTLWLKAHYPSEFMAAVLSADMDNTEKVVTLI-DECSNMGIKVLPPDLNSGQHKF-- 830

Query: 821  IIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIIN 879
             ++ +G    I YG+GAIKG G+  +EA++  R+  G F +LFDF  ++D K INRR++ 
Sbjct: 831  TVDQEG---AIVYGIGAIKGVGEGPVEAVIEARQAQGLFADLFDFCAKVDLKKINRRVLE 887

Query: 880  SLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVK 937
             LI +GA D     R  L AS+  A+  A +  K     Q  +F   +    +   ++ +
Sbjct: 888  KLIMAGALDKLGPHRAALSASLKEAMNAASQNAKATLAGQSDMFGMQEFTQEQSENSFQQ 947

Query: 938  VPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIIT 994
            VP W ++  L  EK+ LG  L+ H    Y +E + +    + +L P       T +G+I 
Sbjct: 948  VPPWPERVWLDGEKETLGLYLTGHPMSQYISECKHYTDCVIKDLVPARRDVFTTTAGLIY 1007

Query: 995  ELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
              ++ T  +G +  ++ +DD S  +E+ ++  ++E+ + +L  ++L+ + G+V  DR+ +
Sbjct: 1008 ATRVLTNKQGRRWALVTLDDKSARMEMRVSPDIFERYEEVLSVDKLIWIKGQVSFDRYNE 1067

Query: 1054 NIRINAEKIFDINVARILYGKKFSVMFNRTFN------ISILKKILLRFKCKNGLPFVLY 1107
               +N  ++  +  AR  + K+ +V  N   N      +S L+ IL R+  K G   +  
Sbjct: 1068 GTTMNITELMTLVEARNRFAKRLTV--NLLANVCSASLVSKLQDILYRY--KGGTCPLHL 1123

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEYS 1149
               +  +  E++  +N+ ++  D+L   L + LG  N  + +S
Sbjct: 1124 KVQHPDVALELQTGVNWSLRLEDELMSELKHMLGDENVHLAFS 1166


>gi|422015880|ref|ZP_16362473.1| DNA polymerase III subunit alpha [Providencia burhodogranariea DSM
            19968]
 gi|414096594|gb|EKT58251.1| DNA polymerase III subunit alpha [Providencia burhodogranariea DSM
            19968]
          Length = 1160

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 743/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++  A    PA AITD +NL G++KFY +A+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E    + + L +L +NN GY  L  L+S+AY +        I+ +WL K
Sbjct: 64   PIIGADFFVESEQLGDEIAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIQRDWLIK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG   GD+G  +  G   + +   R +   FP  +Y+E+ R  +P+    
Sbjct: 124  HK--EGLILLSGGRQGDVGQFLLRGNQALVDECLRFYETHFPGCYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A+   LP+VAT+ + FL+  +F AHE+R  I +G  LS+ KR KK++ +Q  +
Sbjct: 182  LHAAIELATLRGLPVVATNEVCFLETGDFDAHEIRVAIHDGFTLSDPKRPKKYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ +SK GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPT-GDMKTEDFLVLRSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEKVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLDKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEVYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I    +K       +  +PL D  +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRSKKNLEPIDIATIPLQDTKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+I  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGSINNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKVLPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G F  +FD   R+D K INRR++  LI +GAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARQKGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S++ ALK A++  K   I Q  +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMSSLEDALKAADQHAKAEAIGQSDMFGVLADAPEQVESSYASVPKWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y +EI ++   + L ++ PT      TV G++   K+ TT RG 
Sbjct: 953  ERETLGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQMTTVVGLVLSSKVITTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +++++ +   +K +++L+++ +LI +G+V  D F    ++   ++ D
Sbjct: 1013 RIGICTLDDRSGRLDIMLFSDALDKYQHLLEKDSILIATGQVSFDDFNGGNKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  N  +L ++   L       +P  LYY   +  + ++KF 
Sbjct: 1073 ISEAREKYARGLAISLSDRQINDQLLNRLRSTLEPHRSGTIPVHLYYQ-KEDARAKLKFG 1131

Query: 1122 LNYKVQPIDDL 1132
            + ++V P+D L
Sbjct: 1132 VVWRVTPVDAL 1142


>gi|378578231|ref|ZP_09826911.1| DNA polymerase III alpha subunit [Pantoea stewartii subsp. stewartii
            DC283]
 gi|377819340|gb|EHU02420.1| DNA polymerase III alpha subunit [Pantoea stewartii subsp. stewartii
            DC283]
          Length = 1160

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1156 (42%), Positives = 738/1156 (63%), Gaps = 43/1156 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL +   +I+ AA    PA+AITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFIHLHVHSDYSMIDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + +++ +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNVASELMGDELTQITVLAANNTGYQNLTLLISRAYQRGYGVAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSG   GD+G ++  G + +       + + F D +Y+E+ R  +P+    
Sbjct: 122  AELQEGLILLSGGRRGDVGRSLLRGNSALVSECLAFYQQHFADRYYLELVRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KS+ GL
Sbjct: 242  SEDEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  +   ++  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAMLFPDEAVRAEKRPEYDERLDVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLDKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQYPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL-----NKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLPPIDIATIPLEDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L++A T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFKEGAEKMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  +G   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYQFH--VNDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKK 944
                 R  L+++++ ALK A++  K   I Q  +F    D+   +++  +Y  V  W ++
Sbjct: 890  RLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQ--SYASVTPWPEQ 947

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKT 1000
             +L  E++ LG  L+ H    Y  EI +++  + L ++ PT        +G++   ++  
Sbjct: 948  VQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIAARVMV 1007

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A
Sbjct: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067

Query: 1060 EKIFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKY 1116
             ++ DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + 
Sbjct: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARA 1126

Query: 1117 EMKFPLNYKVQPIDDL 1132
            +++F   +++ P D L
Sbjct: 1127 KLRFGAAWRISPSDRL 1142


>gi|291616361|ref|YP_003519103.1| DnaE [Pantoea ananatis LMG 20103]
 gi|386080578|ref|YP_005994103.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis PA13]
 gi|291151391|gb|ADD75975.1| DnaE [Pantoea ananatis LMG 20103]
 gi|354989759|gb|AER33883.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis PA13]
          Length = 1160

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1156 (42%), Positives = 742/1156 (64%), Gaps = 43/1156 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +I+ AA    PA+AITD +NL G++KFY SA+  G+K
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGSAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + +++ +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNVASELMGDELTQITVLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSG   GD+G ++  G + +  +    + + F D +++E+ R  +P+    
Sbjct: 122  AELQEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLELVRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + F+ + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KS+ GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  +   ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQYPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL-----NKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLPPIDIATIPLEDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L++A T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  +G   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYQFH--VNDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKK 944
                 R  L+++++ ALK A++  K   I Q  +F    D+   +++  +Y  V  W ++
Sbjct: 890  RLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQ--SYASVTPWPEQ 947

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKT 1000
             +L  E++ LG  L+ H    Y  EI +++  + L ++ PT        +G++   ++  
Sbjct: 948  VQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIAARVMV 1007

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A
Sbjct: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067

Query: 1060 EKIFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKY 1116
             ++ DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + 
Sbjct: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARA 1126

Query: 1117 EMKFPLNYKVQPIDDL 1132
            +++F   +++ P D L
Sbjct: 1127 KLRFGAAWRISPSDRL 1142


>gi|50119986|ref|YP_049153.1| DNA polymerase III subunit alpha [Pectobacterium atrosepticum
            SCRI1043]
 gi|49610512|emb|CAG73957.1| DNA polymerase III alpha subunit [Pectobacterium atrosepticum
            SCRI1043]
          Length = 1160

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1151 (43%), Positives = 726/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++  A    PALAITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKTAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ ++    + + L +L  +N GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADFYVESDELGDELAHLTVLAMDNEGYQNLTLLISHAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G  +  G    AE     + + FP  +Y+E+ R  +P+    
Sbjct: 122  IEHQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELTRTSRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   + +A+   LP+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  IHAAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTADFLVQCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL +L+ DPE+    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EDRLESLFPDPEVRVARRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V +
Sbjct: 361  GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDMVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKLGQEPIDIATIPLGDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYAAGVRLKDMHPTDRGKMTTAVGLVLAARVMITKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGICTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPADAL 1142


>gi|407716286|ref|YP_006837566.1| DNA polymerase III subunit alpha [Cycloclasticus sp. P1]
 gi|407256622|gb|AFT67063.1| DNA polymerase III, alpha subunit [Cycloclasticus sp. P1]
          Length = 1167

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1097 (44%), Positives = 704/1097 (64%), Gaps = 49/1097 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +FIHLR H+EYS++DG++R+  +++  A    PA+ +TD SNLF  +KFY++A   GIKP
Sbjct: 6    KFIHLRNHTEYSLVDGIIRVKPLVKRVAELAMPAIGVTDQSNLFATVKFYRAALAAGIKP 65

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIE-WLEK 122
            IIG DV I + +  KKP  + LL +N  GYL LCEL+S+AY+   + G A +  +  LEK
Sbjct: 66   IIGADVQIRDSVAQKKPYIITLLAQNQQGYLALCELISEAYLNGQDKGVAYLTSKKILEK 125

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            N   +GLIALSG   G     +Q+   + A+     W ++F D FYIE+QR  +      
Sbjct: 126  N---EGLIALSGCLDGLFSTPLQSNDTEQADTMLSTWLQVFKDRFYIELQRIGRSGEEGL 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
              Q + +AS  + PIVAT+   FLK  EF AHE R CI +G +LS+T+R+K  T++Q  K
Sbjct: 183  NNQLLALASKHHAPIVATNSACFLKPEEFDAHEARVCINQGRVLSDTRRVKTHTEQQYLK 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q +M+ LF D+P A++NT+EIAKRCN++L  G+  LP FP P+ + I+++    S+ GL
Sbjct: 243  SQEDMLALFSDLPEALENTVEIAKRCNVELSLGENFLPDFPVPEGMTIDEYFADLSQKGL 302

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KR+       +    ++ +Y+ RL+ E++ I +M F GYFLIV+DFIQWAK+N +PVGP
Sbjct: 303  EKRIQETSHRIKFDDEKRAQYQARLKRELDVICQMGFPGYFLIVADFIQWAKDNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA S++AY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSIIAYALRITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVGE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG+D VSQI+T+G+MAAK  IRDVGRVL   Y F D ++K IPF+ G  +TL+ A+ E 
Sbjct: 423  KYGRDKVSQIITYGSMAAKAVIRDVGRVLGHPYGFVDRLAKAIPFEIG--MTLTKALDES 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L    K  +EVR+LI+LA  +EG+ RN G HAGGV+IAPSKL +F PLY +EG   ++
Sbjct: 481  PDLLNAYKESDEVRELIDLALMLEGVARNAGKHAGGVVIAPSKLTDFSPLYCEEGGANLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT-----NFSLNKLPLNDKD 597
            +Q+DKDDIE +GL+KFDFLGL TL+I+D   + ++ IN +         +++ LP +D+ 
Sbjct: 541  TQFDKDDIEAVGLVKFDFLGLRTLTIID---WALQNINQRLAAKGEKAVNIDLLPRDDEL 597

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LLK   T AVFQLES+GMK++++  +PD FE+IIAL++L+RPGP+   ++ ++   K
Sbjct: 598  TYELLKNYATTAVFQLESRGMKDLIRRLRPDTFEDIIALVALFRPGPLQSGMVDDYINVK 657

Query: 656  HG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
            HG +   YP P    +L  T G+++YQEQVMQIAQ L GYSLG ADLLRRA+GKKK  EM
Sbjct: 658  HGRKKAEYPHPTLIPILEPTNGVILYQEQVMQIAQDLAGYSLGSADLLRRAMGKKKPEEM 717

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
             + R+ F  GA+   + +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY S
Sbjct: 718  AKQREMFTTGAVANNVEESVATYIFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAHYPS 777

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA LS  MD+T+K+ +L  D  +  GL+ILPP++N S Y F    E D     I YG
Sbjct: 778  EFMAAVLSSDMDNTDKV-VLFIDECRDMGLNILPPDVNSSYYRFTTNEEGD-----IIYG 831

Query: 835  LGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGA+KG G+  IE+I+ +R+  G +++  D   RID +  NRR+  +LI +GA DCF+  
Sbjct: 832  LGALKGVGEGAIESIIQQRELNGPYSSHEDLANRIDLRKANRRVQEALIRAGALDCFDTN 891

Query: 894  RYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            R  L+  +   L+ AE+  K     Q  LF        ++  N V+V +WS+ + L  EK
Sbjct: 892  RAQLMQQLTNVLQVAEQQGKSAMAGQNDLFGVSLVETTQKS-NAVRVKAWSEHERLKHEK 950

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSEL------------------KPTYSCTVSGII 993
             +LG  L+ H F     E+   +   L+ L                  KP    TVSG++
Sbjct: 951  TILGLYLTGHPFDTVRDEMSNIVSGKLAALHDMELSSPGGGQYRRAKGKP---ITVSGLV 1007

Query: 994  TELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
              ++ + T  G KI  I++DD S  +E +  ++++E     L+  +++++ G +  D F 
Sbjct: 1008 LNIRTRPTKSGAKIATIILDDGSARMEAVAYSEVFETYSEQLQVEQIVVIEGSISFDDFA 1067

Query: 1053 KNIRINAEKIFDINVAR 1069
               RI+ E +  +  AR
Sbjct: 1068 GQNRISIESVMTVEQAR 1084


>gi|293394718|ref|ZP_06639010.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM
            4582]
 gi|291422844|gb|EFE96081.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM
            4582]
          Length = 1172

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1160 (43%), Positives = 746/1160 (64%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL ++  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 14   PRFIHLRVHSDYSMIDGLAKVGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 73

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +++   + ++L +L  NN+GY  L  L+S+AY          I  +WL +
Sbjct: 74   PIIGADFHVQSDVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAGPIIDRDWLVE 133

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            ++  +GLI LSG  +GD+G  +  G +   E     + + FPDN+Y+E+ R  +P+    
Sbjct: 134  HR--EGLILLSGGRMGDVGKFLLRGNHAQVEQCLAFYQQYFPDNYYLELIRTGRPDEENY 191

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  +LP+VAT+ ++FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 192  LHAAVALATERDLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 251

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL++KSK GL
Sbjct: 252  NEDEMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVAKSKEGL 310

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N++PVGP
Sbjct: 311  EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP 370

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 371  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 430

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 431  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 488

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 489  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 548

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I K   KT      +  +PL+DK +++
Sbjct: 549  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINKRRAKTDLPPIDIAAIPLDDKKSFD 608

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 609  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 668

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 669  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 728

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 729  EMAKQRGGFEDGAKARGIDGELSIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 788

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y+F   +  DG   +I 
Sbjct: 789  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGQYHFH--VNDDG---EIV 842

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 843  YGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDR 902

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ S+  ALK A++  K   I Q+ +F        +   +Y  V  W ++  L
Sbjct: 903  LGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVAPWQEQVVL 962

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 963  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKR 1022

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1023 GNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTAREL 1082

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + +++
Sbjct: 1083 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RIDARAKLR 1141

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1142 FGATWRVTPTDRLLIDLRTL 1161


>gi|421082965|ref|ZP_15543844.1| DNA polymerase III, alpha chain [Pectobacterium wasabiae CFBP 3304]
 gi|401702191|gb|EJS92435.1| DNA polymerase III, alpha chain [Pectobacterium wasabiae CFBP 3304]
          Length = 1160

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1151 (43%), Positives = 726/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA    PALAITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ ++    + + L +L  NN GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADFYVESDELGDELAHLTVLAMNNEGYQNLTLLISHAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G  +  G    AE     + + FP  +Y+E+ R  +P+    
Sbjct: 122  IEHQEGLILLSGGRRGDVGRFLLRGNQAQAEQCVAFYQEHFPQRYYLELTRTSRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   + +A+   LP+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  IHSAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   ++  DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPEALVNSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTADFLVQCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ +PE+    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EDRLEFLFPEPEVRAARRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDMVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPADAL 1142


>gi|302134069|ref|ZP_07260059.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            NCPPB 1108]
          Length = 1173

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1190 (41%), Positives = 736/1190 (61%), Gaps = 60/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I++  +   PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FPD FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYIEVQRTNRANDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+ + +F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++N++EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY--KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L      E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK   RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVGRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A+++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLDIAFIPLDDL 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F +G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K IN+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
            V  D F   +R+ A+++  I  AR    +   V    T +   LK   LR+      + +
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDARTNLAESLRV----TVHTDALKGDRLRWLGDLCKRHR 1123

Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
               P  + Y   +  +  ++    +++ P D L  AL +  G  N  ++Y
Sbjct: 1124 GACPITVDYT-GQDARALLQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172


>gi|90020753|ref|YP_526580.1| DNA polymerase III subunit alpha [Saccharophagus degradans 2-40]
 gi|89950353|gb|ABD80368.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40]
          Length = 1173

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1168 (42%), Positives = 732/1168 (62%), Gaps = 44/1168 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  QF+HLR+ +E+S++D ++R+  ++  AA    PA+A+TD  N FG++KFYK+A   G
Sbjct: 1    MSSQFVHLRVRTEFSLVDSIIRVKPLVARAAQAQMPAIAVTDFHNFFGLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI GCD  +    E   P+   LL  N  GY  + EL+S +Y +   +G   I+ EWL
Sbjct: 61   VKPICGCDFRMEPLDEESNPAIFTLLAMNPEGYRNITELISLSYQKGQKHGEPYIKFEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            EK  +  G+IALSG  +G++G A+   R   AE   +RW  ++P+ FYIE+QR  + N  
Sbjct: 121  EK--FSAGVIALSGGRVGEVGQALVGNRQVDAEAALQRWIDVYPNRFYIELQRTGRENEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              + + + +A    LP+VAT+ ++FL +  F  HE R CI EG  L + +R +K+T +Q 
Sbjct: 179  RYLHKAMALAEKYQLPVVATNDVRFLDQDLFDVHEARVCIGEGRALDDPRRERKYTDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF DIP AI+NT+EIAKRC+++++ G   LP++P P+ +  N F    S  
Sbjct: 239  LKTAEEMQELFSDIPEAIENTVEIAKRCSIEIQLGTYFLPEYPIPEGMTENSFFEKISYE 298

Query: 301  GLKKRLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  + K  DP+ Y  +K  Y  RL+FE++ II+M F GYFLIV DFIQWAK+++I
Sbjct: 299  GLERRLKTILKEDDPD-YATKKQPYLNRLKFELDIIIQMGFPGYFLIVMDFIQWAKDHNI 357

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC E RD+VI 
Sbjct: 358  PVGPGRGSGAGSLVAYVLDITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEKRDQVIS 417

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV D YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP  PG  +TL+ A
Sbjct: 418  YVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPDPG--MTLTKA 475

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L E +  + + +++ ++A ++EGI RNVG HAGGV+IAP++L++F PLY  E  
Sbjct: 476  FEQEEPLREFLAMDGDGQEIWDMALKLEGITRNVGKHAGGVVIAPTRLVDFAPLYCDESG 535

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDK 596
            +G+++Q+DK+D+EE GL+KFDFLGL TL+I+D  +  I    TK  +    ++ +PL+D 
Sbjct: 536  SGLVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWAVKMIDAQRTKLGDPPLDISAIPLDDA 595

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             T+ LLK+A T AVFQLES+GMK+++   KPD  EE+IAL++L+RPGP+   ++ +F  R
Sbjct: 596  KTFALLKRAETTAVFQLESRGMKDLITRLKPDTLEEMIALVALFRPGPLQSGMVDDFINR 655

Query: 655  KHGE-YFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     YPD +      + +L  TYG++VYQEQVMQIAQ L GYSLG ADLLRRA+GK
Sbjct: 656  KHGRAQVAYPDAKYQHECLQPILEPTYGVIVYQEQVMQIAQELAGYSLGGADLLRRAMGK 715

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  FQ+GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY TA+L
Sbjct: 716  KKPEEMAKQRSTFQDGAASKGIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL 775

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K H+ + FMAA +S  MD T+K+   +++  +   L++LPP++N  ++ F   ++ D   
Sbjct: 776  KAHFPAHFMAATMSSDMDKTDKVVTFIEEC-RNMKLNLLPPDVNRGEFQF--TVDDD--- 829

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
              + YGLGAIKG G+  +EAI+  RK  G F +LFDF  R+D K IN+R + +L+ SGA 
Sbjct: 830  NNVIYGLGAIKGLGEGPVEAIIAARKDGGDFKDLFDFCARVDSKKINKRALEALVRSGAL 889

Query: 888  DCFNE------KRYMLVASIDVALKNAEKTKKFIN--QLSLFKN---DDNNNLKEYLNYV 936
            D           R ++ A++  A+K AE++    N     LF       +     Y  + 
Sbjct: 890  DNLGPGIDVDYDRAVMAAAVPEAVKAAEQSAANANAGMSDLFGEVVPVASERGDAYSEFT 949

Query: 937  KVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITE 995
             V  WS K+ L  E+  LG  L+ H    Y+ E++  +   +  LKP  +   V+G++  
Sbjct: 950  HVRRWSLKERLNGERDTLGLYLTGHPIDEYDEELKHLVSNRIVNLKPDRAKQKVAGLVVA 1009

Query: 996  LKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
             ++  T RG K+  + +DD +  +E  +    Y + K+ L ++ LL++ G+V  D +   
Sbjct: 1010 FRVMKTKRGDKMAFVTLDDRTGRLETAVFADTYNEYKDKLIKDALLVIEGQVSNDDYSGG 1069

Query: 1055 IRINAEKIFDINVARI--LYGKKFSVMFNR-TFNISILKKILLRFKCKNGLPFVLYYCIN 1111
            +++ A+ + D++ AR   + G K      +   N S   +  L+     G P  + Y  +
Sbjct: 1070 LKMRADSVIDMSEAREQNVAGIKVHWHIEKLPKNYSNQFRDTLQQYSDGGCPVTIIYHKS 1129

Query: 1112 KSIKYEMKFPLNYKVQPIDDLKLALINL 1139
             S   E+K   +++V+P ++L   L+NL
Sbjct: 1130 AS-SVELKLGDDWRVRPSEEL---LVNL 1153


>gi|269138108|ref|YP_003294808.1| DNA polymerase III subunit alpha [Edwardsiella tarda EIB202]
 gi|387866839|ref|YP_005698308.1| DNA polymerase III subunit alpha [Edwardsiella tarda FL6-60]
 gi|267983768|gb|ACY83597.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202]
 gi|304558152|gb|ADM40816.1| DNA polymerase III alpha subunit [Edwardsiella tarda FL6-60]
          Length = 1162

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1152 (43%), Positives = 735/1152 (63%), Gaps = 41/1152 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL +   +++  A    PA AITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DV + +E    + S L +L  +N GY  L +L+S AY          I  +WL  
Sbjct: 64   PLVGADVLVRSETMGDELSALTILACDNEGYQNLTQLISHAYQRGYGAEGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y+ GLI LSGA  GD+G  +  G   +       + + FPD++++E+ R  +P+    
Sbjct: 122  IAYRAGLILLSGARHGDVGKLLLRGNQTLVGECVDFYQQHFPDSYFLELVRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ ++FL+ ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHLAVELAQQRDLPLVATNDVRFLEASDFDAHEIRVAIHDGYTLDDPKRPRNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF D+P A+QN++EIAKRCN+ +  G+  LP+FPT   ++  DFL+ K+  GL
Sbjct: 242  SEEEMCELFADLPEALQNSVEIAKRCNVTIRLGQYFLPQFPT-GEMSTEDFLVKKAHEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D       +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLSFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RDRVI +V D
Sbjct: 361  GRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK D+E  GL+KFDFLGL TL+I++   + ++ IN +     L+      +PL+D+ 
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIIN---WALEMINARRARQGLDPVDIAAIPLDDQK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L++A T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYG+++YQEQVMQIAQ+L GYSLG ADLLRRA+GKK
Sbjct: 656  HGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA   G++   A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            THY + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y+F   +  +G   
Sbjct: 776  THYPAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGQYHFH--VNDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
            +I YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRR++  LI SGA
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRVMEKLIMSGA 889

Query: 887  FDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKK 944
            FD     R  L++S++ ALK AE+  +   I Q  +F        +   +Y  VP W  +
Sbjct: 890  FDRLGPHRAALMSSLNDALKAAEQHARAEAIGQADMFGVLAEEPEQVEQSYGSVPPWPVQ 949

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKT 1000
              L  E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++ T
Sbjct: 950  MVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMTTAVGLVLGARVMT 1009

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T RG +I +  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A
Sbjct: 1010 TKRGNRIGMCTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMIA 1069

Query: 1060 EKIFDINVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKY 1116
             ++ DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + 
Sbjct: 1070 RELMDISEAREKYARGLAISLTDRQIDDQLLNRLREALEPHRSGTIPVHLYYQ-RADARA 1128

Query: 1117 EMKFPLNYKVQP 1128
             ++F   ++V P
Sbjct: 1129 RVRFGAAWRVTP 1140


>gi|119505681|ref|ZP_01627751.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2080]
 gi|119458493|gb|EAW39598.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2080]
          Length = 1153

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1149 (42%), Positives = 723/1149 (62%), Gaps = 37/1149 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLRLH+E+S++DGL+RI  ++   A    PA+A+TD +N +G+IK YK+A   G+K 
Sbjct: 3    EFVHLRLHTEFSLVDGLVRIPKLMGEVAAQGMPAVAVTDATNFYGLIKAYKAAQRAGLKL 62

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G D+W+ +  +  +P  + LL  N  GY  L  L+SKA+ E   +G   I  +WL  +
Sbjct: 63   IVGVDLWVEDADDRDRPKPISLLAMNEQGYQNLTLLISKAWREGQYHGSPRIERDWL--D 120

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
             + +G++ALS    G+ G  + NG  + A    +RW   FP+ FYIE+ R  +      +
Sbjct: 121  AHAEGVLALSAGCQGEFGQLLNNGHVEEARASLKRWMATFPERFYIEVHRTGRIGEEDFL 180

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
               + +A+ +  PIVAT+ ++FL  +EF AHE R CI  G  L + +R ++++++Q  +T
Sbjct: 181  HAAVELAAEMECPIVATNDVRFLNTSEFEAHEARVCIGYGRTLDDPRRPREYSEQQYLRT 240

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EM +LF D+P ++ NT+EIA+RC++ +  G+P LP FP P    I DFL   S  GL 
Sbjct: 241  PEEMAELFSDLPESLANTVEIARRCSVTIPLGEPSLPDFPVPDGTTIEDFLSQLSHDGLS 300

Query: 304  KRLLNL-YKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +RL  L   DP+        YK+RL FE+  I +M F GYFL+V DFI+W K   IPVGP
Sbjct: 301  RRLEQLQLTDPDTLS----EYKQRLDFELGVINEMGFPGYFLVVMDFIRWGKQQGIPVGP 356

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC + RD VI+YV D
Sbjct: 357  GRGSGAGSLVAYVLEITDLDPLAYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVIEYVAD 416

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV D  Y   D +SKLIPF+ G  ITL  A+++E
Sbjct: 417  TYGREAVSQIITFGTMAAKAVVRDVARVQDKPYGLADKMSKLIPFEVG--ITLEKAVEQE 474

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              LA+ +K +   +++ ++A Q+EG+ RNVG HAGGV+IAPS+L +F PLY  E   G++
Sbjct: 475  EALAQLLKEDGSAQEIWDMAIQLEGVTRNVGKHAGGVVIAPSRLTDFSPLYCDEAGGGLV 534

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDKDTYN 600
            +QYDK+D+EE GL+KFDFLGL TL+I+D  +  I K   + +     ++++PL+D   + 
Sbjct: 535  TQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVAMINKARGHEQPEKLDISEIPLDDSRVFT 594

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK A T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 595  LLKSAETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNFINRKHGR 654

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E   YPD        + +L  TYGI++YQEQVMQIAQ L GY+LG ADLLRRA+GKKK  
Sbjct: 655  EALAYPDASYQHSSLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPE 714

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+  + A +IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LKTH+
Sbjct: 715  EMAKQRSVFEEGASKKGIDPNLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKTHF 774

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  +D+T+K+ + ++D  K+ G+ +  P +N   Y F     +     +I 
Sbjct: 775  PAEFMAAVMSSELDNTDKL-LTLRDECKSMGVPLRLPGVNEGAYLF-----TVNAANEIV 828

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGAIKG G+  +E ++  R   G F +LFD   R D + +NRR + +LI SGA D F 
Sbjct: 829  YGLGAIKGLGEGPVENLLAARVADGAFKDLFDLCSRTDPRKVNRRALEALIKSGALDGFG 888

Query: 892  EKRYMLVASIDVALKNAEKT--KKFINQLSLFKN-DDNNNLKEYLNYVKVPSWSKKQELI 948
             +R++ +A++D AL+ AE+T          LF +     +   Y  +  V  W+ K+ L 
Sbjct: 889  VERWIQLAALDDALRAAEQTVANDEAGMTDLFGDVAPTADGDPYAEHRGVRPWTLKEILN 948

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILI 1008
             EK+ +G  LS H    YE E+R+F P  L +L+P  + TV+G+I +++   T RG + +
Sbjct: 949  GEKESVGSFLSGHPIQEYEAEVRKFAPRRLRDLQPDSNTTVAGLIVDIRTIKTQRGVMAV 1008

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            + +DDN+  +E  +  + Y +++ +L ++ ++++SG+V  D +   + + A +I  +  A
Sbjct: 1009 LKLDDNTGQIESTVYAEAYTEHRELLVKDRIVLLSGRVQSDEYSGGLSMRAREIRSLEQA 1068

Query: 1069 RI-----LYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLN 1123
            R+     +  + F    +R     ++K++LL          V Y+    S +  +     
Sbjct: 1069 RLSRVSEIRLEVFDGGLDRQLR-QLIKEVLLTSGGGECPVTVDYFQPLGSARVALGD--Q 1125

Query: 1124 YKVQPIDDL 1132
            ++V P DDL
Sbjct: 1126 WRVNPSDDL 1134


>gi|389774296|ref|ZP_10192415.1| DNA polymerase III subunit alpha [Rhodanobacter spathiphylli B39]
 gi|388437895|gb|EIL94650.1| DNA polymerase III subunit alpha [Rhodanobacter spathiphylli B39]
          Length = 1179

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1184 (42%), Positives = 726/1184 (61%), Gaps = 65/1184 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   + HL LHSEYS++D  +RI  ++ A   D  PA+A+TD SN+F ++KFYK+    G
Sbjct: 1    MTVSYTHLHLHSEYSLVDSTIRIKALVAACVRDGIPAVALTDDSNMFALVKFYKACSAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI GCD+WI++  ++ +P RL LL +N +GYL L  L+S+A+ E  + GRA +   WL
Sbjct: 61   IKPIGGCDLWISSS-DDPRPWRLTLLCQNRDGYLNLSRLVSRAWQEGQHGGRALVDASWL 119

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                 + GLIAL G       +A+  G  D A+   R  +++FPD  Y+E+ R  +    
Sbjct: 120  TAGATE-GLIALLGRDSETARLAIGQG-IDAAQARLRPLARLFPDRLYLELTRCGRDGEE 177

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
                  + +A  + LP++A++ ++FLK+ +F AHE R CI +G +L++ KR ++++ +Q 
Sbjct: 178  NWNTAALALAGELALPVLASNDVRFLKQDDFAAHEARVCINQGRVLADPKRPREYSDQQY 237

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT +EM  LF D+P A++N++E+AKRC L+L+FG   LP FP P+  +++  +   S+ 
Sbjct: 238  LKTPAEMAALFADLPEALENSVELAKRCTLELKFGTYYLPDFPVPEGHDLDSHIRELSRQ 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL +    P         Y  RL+ E++ I+KM F GYFLIV+DFI W K N IPV
Sbjct: 298  GLRERLEHA---PLAADHTLDDYHARLERELDVIVKMGFPGYFLIVADFINWGKQNGIPV 354

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVA++L ITD+DPL +NLLFERFLNP R+SMPDFDIDFC + RD VI YV
Sbjct: 355  GPGRGSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYV 414

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI- 479
              +YG+D VSQI+T+G+MAAK  +RD GRVL + Y   D ++K++P +P  L TLS+A+ 
Sbjct: 415  ARKYGRDRVSQIITYGSMAAKAVLRDSGRVLSMPYGQVDRLAKMVPPRPLDL-TLSDALG 473

Query: 480  -----KEEP-----QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
                 K+E      +  E  + +E+ R LI+LA  +E + RN G HAGGV+IAP+ L +F
Sbjct: 474  RSEKSKKETDRVVKEFCETYEQDEDARALIDLALSLENLTRNAGKHAGGVVIAPTPLTDF 533

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN---- 585
             PLY + G  G+++QYDKDD+E +GL+KFDFLGL TL+I+D   + +K IN +       
Sbjct: 534  APLYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIID---WAVKAINARRAKAGEA 590

Query: 586  -FSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGP 644
               ++ LPL+D  +Y LLKKA TVAVFQLES GM+ MLK+AKPD FE+IIAL++LYRPGP
Sbjct: 591  LLDISALPLDDPASYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGP 650

Query: 645  MDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLR 703
            MDLI +F  RKHG E   YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLR
Sbjct: 651  MDLIPSFVARKHGREEVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLR 710

Query: 704  RAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763
            RA+GKKK  EM + R  F+ GA K GLS  KA+ IF+ +EKFAGYGFNKSHA AYAL+SY
Sbjct: 711  RAMGKKKLEEMAKERAKFREGAAKDGLSGEKADAIFDLMEKFAGYGFNKSHAAAYALVSY 770

Query: 764  YTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE 823
             TA+LK HY + FMAA +S  MD+T+K+   + D  +  G+++ PP++N S+Y F  I  
Sbjct: 771  QTAWLKAHYPAEFMAATISSDMDNTDKVVTFL-DESRAIGIAVQPPDVNASEYMFVAI-- 827

Query: 824  SDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLIN 883
               + K I+YGLGAIKG G+   EAIV ER  G +T+L DF +R+D   +NRR++ +LI 
Sbjct: 828  ---EPKVIQYGLGAIKGVGQGACEAIVAERAHGKYTDLADFCRRVDPTRLNRRVLEALIM 884

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEY-LNYVKVPS 940
            +GA D     R  L+  +  A+K AE+    +   Q  +F     N      ++   VP 
Sbjct: 885  AGALDALAANRASLMLQLPDAIKAAEQHLRDRQSGQNDMFGAAMGNTTPVVKIDLPTVPE 944

Query: 941  WSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------------------- 981
            W  +Q+L  E+  LG  LS H    ++ E+ Q     L E+                   
Sbjct: 945  WPLEQKLQGERDTLGHYLSGHPTDPWKEELAQLSTCPLGEIVDRYQPPKPRKNDDGDNNR 1004

Query: 982  ---KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENE 1038
                P    TV+G++T ++ +         + ++D +  +EV    +LY++   +L  ++
Sbjct: 1005 FRRGPDTPWTVAGMVTAVRKRGDSDA---FVRLEDGTGIIEVSFFGELYQQMAPLLTRDQ 1061

Query: 1039 LLIVSGKVLEDRFL-KNIRINAEKIFDINVARILYGKKFSVMFNRTFN--ISILKKILLR 1095
            +L+V G +  D F     ++ A     +  A   + +   +  N       + L++ L  
Sbjct: 1062 MLVVDGGLRIDDFSGGGFQLRARSALSLEDACRKHARLLQLKLNGIGPDFAAQLQRTLAG 1121

Query: 1096 FKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
            ++        L+   N+S + +++    ++V  I DL  A+  L
Sbjct: 1122 YRGGRA-SVTLHGYRNRSAQADLELGEAWRVDAIPDLLRAVRAL 1164


>gi|448243647|ref|YP_007407700.1| DNA polymerase III alpha subunit [Serratia marcescens WW4]
 gi|445214011|gb|AGE19681.1| DNA polymerase III alpha subunit [Serratia marcescens WW4]
          Length = 1162

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1160 (43%), Positives = 741/1160 (63%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++  A    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTAPLVKRVAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFHVQSEELGDELAQLTVLASNNEGYQNLTLLISRAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSGA  GD+G  +  G     +     + + FPD +Y+E+ R  + +    
Sbjct: 122  IEHREGLILLSGARQGDVGKFLLRGNQAQVDQCLDFYQQHFPDCYYLELIRTGRQDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N++PVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  T      +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKARGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ S+  ALK A++  K   I Q+ +F        +   +Y  +  W ++  L
Sbjct: 893  LGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANIAPWPEQVVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++  +  EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1013 GNRIGICTLDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREV 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  + +++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARAKLR 1131

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1132 FGATWRVTPTDRLLIDLRTL 1151


>gi|429092015|ref|ZP_19154664.1| DNA polymerase III alpha subunit [Cronobacter dublinensis 1210]
 gi|426743328|emb|CCJ80777.1| DNA polymerase III alpha subunit [Cronobacter dublinensis 1210]
          Length = 1159

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1151 (43%), Positives = 735/1151 (63%), Gaps = 34/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PA AITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +  E+  +  S + +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIIGADFNMQCELLGEDFSHITVLAANNTGYQNLTLLISRAYQRGYGALGPWIDQQWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                +G++ LSG   GD+G  +  G N +AE     + + FPD +Y+E+ R  +P+    
Sbjct: 124  --LGEGIL-LSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVRTGRPDEERY 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ ++F++  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 181  LHAAVALAEEKGVPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIA+RCN+ +  G+  LPKFPT  ++   DFL+ KSK GL
Sbjct: 241  TEDEMCELFSDIPEALENSVEIARRCNVTVRLGEYFLPKFPT-GDMTTEDFLVLKSKEGL 299

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE    ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 300  EERLEFLFPDPEERAQKRPAYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 359

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 360  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 419

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 420  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEVE 477

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     +
Sbjct: 478  PQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDEMGQHPV 537

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+DK +++
Sbjct: 538  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALDMINARRAKQGLEPIDIAAIPLDDKKSFD 597

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 598  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 657

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 658  EAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 717

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 718  EMAKQRSIFEDGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 777

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 778  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 831

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 832  YGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 891

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 892  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEQSYANCQPWPEQVVLEG 951

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G+I   ++  T RG 
Sbjct: 952  ERETLGLYLTGHPINQYLKEIDRYVGGMRLKDMHPTERGKLTTAAGLIISARVMVTKRGN 1011

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1012 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1071

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1072 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1130

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1131 ATWRVSPNDRL 1141


>gi|253687352|ref|YP_003016542.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            carotovorum PC1]
 gi|251753930|gb|ACT12006.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp.
            carotovorum PC1]
          Length = 1160

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1151 (43%), Positives = 727/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA    PALAITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++    + + L +L  NN GY  L  L+S+AY          I   WL  
Sbjct: 64   PIIGADFCVESDELGDELAHLTILAMNNEGYQNLTLLISQAYQRGYGAAGPTIDRNWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSG   GD+G  +  G    AE     + + FP  +Y+E+ R  +P+    
Sbjct: 122  IEHREGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEYFPQRYYLELIRTSRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELATKHGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVECSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAARRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKARGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q+ +F        +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPADAL 1142


>gi|238918790|ref|YP_002932304.1| DNA polymerase III, subunit alpha, putative [Edwardsiella ictaluri
            93-146]
 gi|238868358|gb|ACR68069.1| DNA polymerase III, subunit alpha, putative [Edwardsiella ictaluri
            93-146]
          Length = 1162

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1149 (43%), Positives = 730/1149 (63%), Gaps = 35/1149 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL +   +++  A    PA AITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DV + +E    + S L LL  +N GY  L +L+S AY          I  +WL  
Sbjct: 64   PLVGADVLVRSETMGDELSALTLLACDNQGYQNLTQLISHAYQRGYGAEGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y+ GLI LSGA  GD+G  +  G   +A      + + FPD++++E+ R  +P+    
Sbjct: 122  IAYRAGLILLSGARQGDVGKLLLRGNQTLAGECVDFYQRHFPDSYFLELVRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ ++FL+ ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHLAVELAQQRDLPLVATNDVRFLETSDFDAHEIRVAIHDGYTLDDPKRPRNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF D+P A+QN++EIAKRCN+ +  G+  LP+FPT   +    FL+ K+  GL
Sbjct: 242  SEEEMCELFADLPEALQNSVEIAKRCNVTIRLGEYFLPQFPT-GEMTTEAFLVKKAHEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D       +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLTFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RDRVI +V D
Sbjct: 361  GRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+D+ +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRACQGLEPVDIAAIPLDDQKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L++A T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  ILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYG+++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 659  EELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G++   A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN  +Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGQYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRR++  LI SGAFD 
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRMMEKLIMSGAFDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L++S+  ALK AE+  +   I Q+ +F        +   +Y  VP W  +  L
Sbjct: 893  LGPHRAALMSSLSDALKAAEQHARAEAIGQVDMFGVLAEEPEQVEQSYGSVPPWPAQMVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++ TT R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMTTAVGLVLGARVMTTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I +  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1013 GNRIGMCTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMIAREL 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLREALEPHRSGTIPVHLYYQ-RADARARVR 1131

Query: 1120 FPLNYKVQP 1128
            F   ++V P
Sbjct: 1132 FGAAWRVTP 1140


>gi|378768457|ref|YP_005196930.1| DNA polymerase III subunit alpha [Pantoea ananatis LMG 5342]
 gi|386014753|ref|YP_005933030.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis AJ13355]
 gi|327392812|dbj|BAK10234.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis AJ13355]
 gi|365187943|emb|CCF10893.1| DNA polymerase III, alpha subunit [Pantoea ananatis LMG 5342]
          Length = 1160

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1156 (42%), Positives = 741/1156 (64%), Gaps = 43/1156 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +I+ AA    PA+AITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + +++ +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNVASELMGDELTQITVLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSG   GD+G ++  G + +  +    + + F D +++E+ R  +P+    
Sbjct: 122  AELQEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLELVRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + F+ + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KS+ GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  +   ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQYPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL-----NKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLPPIDIATIPLEDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L++A T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  +G   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYQFH--VNDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKK 944
                 R  L+++++ ALK A++  K   I Q  +F    D+   +++  +Y  V  W ++
Sbjct: 890  RLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQ--SYASVTPWPEQ 947

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKT 1000
             +L  E++ LG  L+ H    Y  EI +++  + L ++ PT        +G++   ++  
Sbjct: 948  VQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIAARVMV 1007

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A
Sbjct: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067

Query: 1060 EKIFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKY 1116
             ++ DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + 
Sbjct: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARA 1126

Query: 1117 EMKFPLNYKVQPIDDL 1132
            +++F   +++ P D L
Sbjct: 1127 KLRFGAAWRISPSDRL 1142


>gi|398848571|ref|ZP_10605380.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM84]
 gi|398247826|gb|EJN33260.1| DNA-directed DNA polymerase III PolC [Pseudomonas sp. GM84]
          Length = 1174

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1185 (41%), Positives = 738/1185 (62%), Gaps = 57/1185 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A A    PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+  L  N  GY  L EL+S+ + +    G   ++ +W+    
Sbjct: 65   SGADLWLAGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVILQRDWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR+D AE     W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALMAGRDDEAEALLGDWMSMFPERFYVEVQRTNRAGDETYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +  P+VAT+ ++F+K+++F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADKLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRGYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  GL++
Sbjct: 243  EEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPDLNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIEADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +L+++ +++  L +  P++N S++ F   +  DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLIEE-VRSMKLRLDAPDVNASEFKF--TVNDDG---RII 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +R+D K +N+R +++LI SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARTQGGPFKDLFDFCERVDLKRVNKRTLDALIRSGALDRLG 894

Query: 889  ------------CFNEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNNNLK 930
                          +  R  L+++++ A+K AE+T +  +         LF  +D++   
Sbjct: 895  PHFHDEIKAYHASIDVNRATLLSALEEAIKAAEQTARTADSGHVDLFGGLFVEEDSDV-- 952

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP+    T+
Sbjct: 953  -YANHRKVRELTLKERLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDLKPSRETQTI 1011

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  + +DD S  +E  +    Y   + +L+ + +++V G+V  
Sbjct: 1012 AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADTYMGAQALLQNDAMVVVEGEVSN 1071

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPF 1104
            D F   +R+  +++  +  AR    +   +       +   ++ L +++ R   + G P 
Sbjct: 1072 DDFSGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLNWLGELITRH--RGGCPI 1129

Query: 1105 VLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             L Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1130 TLEYT-GSDAKAMLQFGDQWSIDPADGLIQALRDQFGRENVFLQY 1173


>gi|304414199|ref|ZP_07395567.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola
            LSR1]
 gi|304283413|gb|EFL91809.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola
            LSR1]
          Length = 1160

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1159 (43%), Positives = 747/1159 (64%), Gaps = 35/1159 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL + + +++ AA+   PALAITD +NL G+IKFY SA   GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSALVKKAASLGMPALAITDFTNLCGLIKFYSSAQAAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +++ + + ++L +L +N  GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIIGADFYLQSKLLDDELAQLTILARNQQGYQNLTLLISKAYQRGYGASGPLIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              + +GLI LSG   GD+G  +  G           + + F DN+Y+E+ R  +P+    
Sbjct: 122  ITHSEGLILLSGGRSGDVGKFMLRGNQTQMLECLAFYQQYFADNYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            ++  I +AS  ++P+VAT+ ++F+  ++F AHE+R  I +G  L++TKR K ++ +Q  +
Sbjct: 182  LRGAIALASQHDIPVVATNDVRFIDTSDFEAHEIRVAIHDGATLADTKRPKNYSPQQFMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM  LF DIP A+ N+IEIAKRCNL +  G+  LP+FPT   ++  DF   K++ GL
Sbjct: 242  NEQEMCALFSDIPEALTNSIEIAKRCNLSIRLGEYFLPQFPT-GAMSTEDFFAEKAQLGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D    K  +  Y +RL  EI+ I +M F+GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDVNTKKQRRAAYDERLNVEIKVINQMGFAGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL+++LLFERFLNP RISMPDFDIDFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDIDFCMEKRDQVIEHVAN 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D I+KLIP   G  +TL  A   E
Sbjct: 421  IYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPLDVG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLAELYQADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++ T+  I  ++ +    +  +  +PL+DK ++ 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWTLVMINAQQASKGLPSIDITTIPLDDKKSFA 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRAETTAVFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EALSYPDIQWQHELLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKDPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+NGA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSIFENGAKQQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMA  ++  MD+T+K+  +V + I+  GL +L P+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAGVMTADMDNTDKLVGMVDECIRM-GLKVLLPDINSGSYHFN--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I AI+  R+  G F +LFD   R + K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPITAILNARQAGGHFKDLFDLCARTETKKLNRRVLEKLILSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F     +  +   +Y  +  W ++  L  
Sbjct: 893  PHRASLMHSLETALKAADQHAKAEAIGQKDMFGVLTGSPEQVEHSYANIAPWQEQIVLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  E+ ++   I L +L  T    + TV+G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKELERYSGGIRLKDLHVTERGKTTTVAGLVIAARVIVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++  +  EK +++L+++ +LI +G+V  D F   +++N  ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTETLEKYQHLLEKDRILIATGQVSVDDFNGGLKMNVREVMD 1072

Query: 1065 INVARILY--GKKFSVMFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
            IN AR  +  G   S+M N+  N   L ++  LL+  C   +P  +YY  + + + +++ 
Sbjct: 1073 INQAREKHACGLAISLMHNK-INDQFLNRLRQLLQPHCSGTIPVHIYYQCSDA-RAKLRL 1130

Query: 1121 PLNYKVQPIDDLKLALINL 1139
               +++ P + L + L  L
Sbjct: 1131 GAAWRITPTERLLIDLRTL 1149


>gi|403057428|ref|YP_006645645.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            carotovorum PCC21]
 gi|402804754|gb|AFR02392.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp.
            carotovorum PCC21]
          Length = 1160

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1151 (42%), Positives = 730/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA    PALAITD +NL G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++    + + L +L  NN GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADFCVESDELGDELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G  +  G    AE     + + FP  +Y+E+ R  +P+    
Sbjct: 122  VEHQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYLELIRTSRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   +P+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVQCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++         +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      TV G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTVVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPADAL 1142


>gi|271499510|ref|YP_003332535.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech586]
 gi|270343065|gb|ACZ75830.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech586]
          Length = 1160

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1151 (43%), Positives = 728/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY  A++ GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E    + + L +L  NN GY  L  L+S+AY          I  EWL  
Sbjct: 64   PIIGADFYLQSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGYGADGPTIDREWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q G++ LSG   GDIG  +  G   + E     + + FP  FY+E+ R  +P+    
Sbjct: 122  VEHQAGILLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELTRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A+   LP+VAT+ + F+ + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAIKLATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+  +K GL
Sbjct: 242  SEDEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDYLVMCAKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E+    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEVRAQRRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY  +     +
Sbjct: 479  PQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDQEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I     K       +  +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLEPVDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F +LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  A+K+A++  K   I Q  +F        +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLADAMKSADQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEVMLFTDALEKYQHLLEQDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RQDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPTDVL 1142


>gi|431927928|ref|YP_007240962.1| DNA-directed DNA polymerase III PolC [Pseudomonas stutzeri RCH2]
 gi|431826215|gb|AGA87332.1| DNA-directed DNA polymerase III PolC [Pseudomonas stutzeri RCH2]
          Length = 1173

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1185 (42%), Positives = 735/1185 (62%), Gaps = 50/1185 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MPVSFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SRL LL  N  GY  L EL+S+ + E        I  +W+
Sbjct: 61   IKPICGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLVIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +     +GLIALSGA  G++G A+ NG   +AE     W  +F D FY+EIQR  + N  
Sbjct: 121  KLAA--EGLIALSGAKEGEVGQALLNGDEALAEARLAEWRDVFADRFYLEIQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +     +A     P+VAT+ ++FLK+ +F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EHLHAAAALADRTGTPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT +EM +LF D+P A++NT+EIAKRCN++++ G   LP FP P+ + I+D+L   S  
Sbjct: 239  LKTPAEMAELFSDLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFE 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L KD   Y+ +K  Y  RL+FE+ TII+M F GYFLIV DFI+WAKNN +P
Sbjct: 299  GLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +  +E+ R++ E+A ++EGI R  G HAGGV+IAP+KL +F P+   E   
Sbjct: 477  EMEEPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
            G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K      +++ +PL+DK 
Sbjct: 537  GLVTQFDKDDVESAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPINIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+ K  +  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCSNNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY S FMAA LS  M +T+K+ IL+++  ++  L I PP++N+S++ F   +  DG   
Sbjct: 777  AHYPSPFMAAVLSADMHNTDKVVILIEEC-RSMKLRIDPPDVNVSEFKF--TVNDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGA+KG G+  +EAI   R + G F +LFDF  RID K IN+R + +LI SGA D
Sbjct: 831  RIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFI--NQLSLFKND-DNNNLK 930
                             +  R +L+A+++ A++ AE+T +      + LF          
Sbjct: 891  RLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTV 989
             Y N+      S K+ L  EK  LG  L+ H    YE E+R+F    + +L+P     T+
Sbjct: 951  VYANHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIIDLRPARGEQTI 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  I +DD S  +E  +  + +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFNSAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPF 1104
            D F   +R+ A+++  +  AR    +   V       R   +  L ++  R   +   P 
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVAGEALRGERMRWLAEVCGRH--RGACPI 1128

Query: 1105 VLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             L Y   +  +  ++F   +++ P D+L  AL +  G  N  ++Y
Sbjct: 1129 TLEYT-GRDARALLQFGEEWRIDPADNLIQALRDQFGRDNVFLQY 1172


>gi|187733784|ref|YP_001878986.1| DNA polymerase III subunit alpha [Shigella boydii CDC 3083-94]
 gi|187430776|gb|ACD10050.1| DNA polymerase III, alpha subunit [Shigella boydii CDC 3083-94]
          Length = 1160

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1151 (43%), Positives = 733/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + +       + + FPD +++E+ R  + +    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVGECVAFYEEHFPDRYFLELIRTGRLDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y    ++ + +R  +  +L ++   L       +P  LYY      +  ++F 
Sbjct: 1073 IDEAREKYASGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|440232115|ref|YP_007345908.1| DNA-directed DNA polymerase III PolC [Serratia marcescens FGI94]
 gi|440053820|gb|AGB83723.1| DNA-directed DNA polymerase III PolC [Serratia marcescens FGI94]
          Length = 1162

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1160 (43%), Positives = 739/1160 (63%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY +A+  G+K
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKRAAALAMPALAITDFTNLCGLVKFYGTAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + + L  L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFHVQSEVLGDELAELTALAANNAGYQNLTLLISRAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSGA +GD+G  +  G     +     + + FPD++Y+E+ R  +P+    
Sbjct: 122  IEHREGLILLSGARMGDVGKFMLRGNQAQVDQCLEFYQQYFPDSYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAAERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSVQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   +   DFL++KS+ GL
Sbjct: 242  SEDEMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPT-GEMTTEDFLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  LY DPE     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLYPDPEERARRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K+      +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKSGEPPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKSIGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ S+  ALK A++  K   I Q+ +F        +   +Y  V  W ++  L
Sbjct: 893  LGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVAPWQEQVVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVVAARVMVTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1013 GNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTAREL 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + +++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RIDARAKLR 1131

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1132 FGATWRVTPTDRLLIDLRTL 1151


>gi|422336958|ref|ZP_16417930.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus F0387]
 gi|353345510|gb|EHB89801.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus F0387]
          Length = 1158

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1158 (42%), Positives = 740/1158 (63%), Gaps = 39/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+A+TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMALTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + +++  ++  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGADVLVQSDLCGEERFRLTLLAKNNEGYKNITLLLSKAY----ERGYADVPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRT--GVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               IQ  + +A   +LP+VAT+ + FL++ +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  EEYIQAVLTLAEQTDLPVVATNDVCFLQEDDFEAHEIRVAIHDGYTLEDPKRPKNYTGQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IP
Sbjct: 297  EGLEERLKVLFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNNIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       +N +PL+D  
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDINTIPLDDHQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ +L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAIKNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q  +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQRNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVSRYLKELSHYSPVRLKELTPNYRGQMSTASGLVVNTRIAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  +K    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALDKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNR-TFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
              I+ AR  Y K  ++  N+   N + +K  K +L     N LP  +YY ++   +  +K
Sbjct: 1069 MTIDEARARYAKSLAICLNQEQINTTFIKQFKAILEPYSGNTLPVHIYY-LSPQGRALVK 1127

Query: 1120 FPLNYKVQPIDDLKLALI 1137
              + + V P D+L   L+
Sbjct: 1128 MGVQWSVNPTDELLGELV 1145


>gi|335419057|ref|ZP_08550115.1| DNA polymerase III, alpha subunit [Salinisphaera shabanensis E1L3A]
 gi|334897192|gb|EGM35328.1| DNA polymerase III, alpha subunit [Salinisphaera shabanensis E1L3A]
          Length = 1166

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1114 (43%), Positives = 706/1114 (63%), Gaps = 44/1114 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+HLR+H+EYS+ DG++RI  ++        PA+A+TD  NLFG++KFYK+A   G
Sbjct: 1    MPAEFVHLRVHTEYSLSDGIVRIKPLLSQTREAGMPAVAVTDNVNLFGMVKFYKTALGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI+G D+ I +E   + PSRL LL ++  GY  LC+LL++AY+   + G+   + EW+
Sbjct: 61   IKPIVGVDLQI-DEGPQETPSRLTLLAQHREGYRNLCDLLTQAYLHGQHRGQVLCQREWV 119

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                  DGLIALSG  +GD GIA+  G+ +IA+  A  W +IF D +Y+E+ R ++    
Sbjct: 120  ADKA--DGLIALSGGMVGDTGIALMAGKPEIADARAAEWQQIFGDRYYLEVTRCERSGEA 177

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              + + + +A   ++PIVAT+ ++F    +F AHE R  I  G  L++ +R K +T EQ 
Sbjct: 178  AWLSETVGLALRRDIPIVATNDVRFPHADDFDAHEARVAIHGGYTLADPRRPKNYTPEQY 237

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  +M +LF D+P A++N++EIA+RCNL+L  G+  LP+FP P   +   FL S+S+ 
Sbjct: 238  LKTPEQMAELFADLPEALENSVEIARRCNLELTLGENVLPEFPVPDGHDAASFLRSESES 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +RL  LY D +  +  K  Y  RL  E++ I  M F GYFLIV+DFI+WA+ N +PV
Sbjct: 298  GLAERLELLYPDEDERERRKPEYDARLDHELDVIKSMGFPGYFLIVADFIRWARENGVPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+YV
Sbjct: 358  GPGRGSGAGSLVAYVLGITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
              RYG++ VSQI+T+GTMAAK  +RDVGRVL   Y   D I+K +PF P   +TL+ A++
Sbjct: 418  AQRYGQEKVSQIITYGTMAAKAVVRDVGRVLGHPYGMVDRIAKQVPFAPD--MTLTRALE 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            E  +L +  + +EEV  L+ELA  +EG+ RN G HAGGV+IAPS LI+F PLY + G   
Sbjct: 476  ESEELRQS-REDEEVGYLLELALALEGLSRNPGKHAGGVVIAPSNLIDFTPLYCEAGGGN 534

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++Q+DKDD+E +GL+KFDFLGL TL+I+D+ +        K+      +  +PL+DK  
Sbjct: 535  RVTQFDKDDVEAVGLVKFDFLGLRTLTIIDRAVQVANDRLAKSGKDPIDIRSIPLDDKKP 594

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            Y LLK  +T AVFQLES GM+ ++K+ KPD  E+I+AL++LYRPGP++  ++++F  RKH
Sbjct: 595  YELLKAGDTTAVFQLESSGMRRLVKQLKPDELEDIVALVALYRPGPLESGMVEDFIDRKH 654

Query: 657  GEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+    YP     +VL  TYG+++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  EM 
Sbjct: 655  GKARVVYPHDSLAEVLEPTYGVILYQEQVMQIAQVLAGYSLGNADLLRRAMGKKKPEEMA 714

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R  F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK +Y + 
Sbjct: 715  KQRDGFVKGAVANGIEEDTAAYIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAYYPAD 774

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FM+A LS  MD T+K+ I++ D     G+ ++PP++N S+Y F  + ++      IRYGL
Sbjct: 775  FMSAVLSADMDHTDKVVIMI-DECHRLGIDVVPPDVNASEYNFSVVDDT-----AIRYGL 828

Query: 836  GAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  IE ++ ER+  G + NL+DF +RID    NRR + +LIN+GA D     R
Sbjct: 829  GAIKGLGRGAIETVIEERRQNGVYANLYDFCRRIDTSKANRRALEALINAGALDALGPNR 888

Query: 895  YMLVASIDVALKNAEKTKKFI----NQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
              L+  +  AL  AE+ +       N +     D ++N+   L   + P W + + L  E
Sbjct: 889  ASLMQGLTRALAAAEQDRSAASAGQNDMFGLAEDASDNMGPPLE--ERPEWPEDERLRAE 946

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY----------------SCTVSGIIT 994
            +  LG  L+ H    +E E+       ++E                     S  V+G++ 
Sbjct: 947  RDTLGLYLTGHPIRAWEDELALMTHGKIAEQVAAMPRPEEGGGRGRRGNKRSAVVAGLVV 1006

Query: 995  ELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
            E  ++   +G+ +I+V+DD S  +E  +  +   +  ++L  ++L++V GK+  D F   
Sbjct: 1007 E--VRRMKKGRRIIVVLDDGSARIECPLFEEKAAEYGHLLAADKLVVVEGKLQYDDFSDG 1064

Query: 1055 IRINAEKIFDINVARILYGKKFSVMFNRTFNISI 1088
             R+NAE + D + A+  +  +  V+   T N+ +
Sbjct: 1065 FRLNAETVMDFDTAQARFAHR--VLLRATPNVDV 1096


>gi|227114702|ref|ZP_03828358.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            brasiliensis PBR1692]
          Length = 1160

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1151 (42%), Positives = 729/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA    PALAITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++    + + L +L  NN GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADFCVESDELGDELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G  +  G    AE     + + FP  +Y+E+ R  +P+    
Sbjct: 122  VEHQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYLELIRTSRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   +P+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVQCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++         +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYASGVRLKDMHPTDRGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPADAL 1142


>gi|336317513|ref|ZP_08572365.1| DNA-directed DNA polymerase III PolC [Rheinheimera sp. A13L]
 gi|335878135|gb|EGM76082.1| DNA-directed DNA polymerase III PolC [Rheinheimera sp. A13L]
          Length = 1156

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1084 (44%), Positives = 708/1084 (65%), Gaps = 28/1084 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR+HS++S+IDG+ +I  +++AA     PALA+TD  N+ G+++FY +A++ GIK
Sbjct: 4    PGFIHLRVHSDFSMIDGIKKIKPIVKAAKELNMPALALTDQMNMCGLVRFYSTAHDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D+W+ + +      RLL+L  +N GY  L  LLSKAY+      + +I  +WL  
Sbjct: 64   PIVGADLWVQHPLFPGDACRLLILAADNVGYQNLTMLLSKAYLRGHVQHKPQIDHDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +Y++GLI LSGA  G +G A+  G    A      + + FP  F+IE+ R  +P+    
Sbjct: 122  VEYKEGLIVLSGAKDGPLGKALIKGNVPSALALVEFYQQHFPGRFFIELTRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  I +A    LP+VAT+ +  L   +F AHE+R  I +G  L + +R K ++++Q  +
Sbjct: 182  IQAAIELAEREQLPVVATNEVVMLSPDDFPAHEIRVAIHDGFTLEDKRRPKNYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EMI+LF DIP A+QN++EIAKRCN+ +  G+  LP FPT   ++  DFL+ KSK GL
Sbjct: 242  SAEEMIELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPAFPT-GGLSDADFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +KRLL L+ DPE+ K +++ Y +RL  E+  I +M F GYFL+V +FIQW+K+N IPVGP
Sbjct: 301  EKRLLQLFPDPEVRKVKRVEYDERLDIELGVINQMGFPGYFLVVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+LSITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALSITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A KEE
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPTPG--MTLEQAFKEE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E    ++EV+ LI++A+Q+EG+ RN G HAGGV+IAP+K+ +F P+Y        +
Sbjct: 479  PRLPELYAADQEVKDLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFAPVYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+IL   +    +   +       +N +PL D+ +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTILQWAVNMTNERLAREGKPLVDINTIPLTDRKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L KA+T AVFQLES+GMK++++  +PD FE++IAL++L+RPGP+   ++ NF  RK G 
Sbjct: 599  VLMKADTTAVFQLESRGMKDLIRRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKRGR 658

Query: 658  EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD   +      +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 659  EEISYPDSTWQHDSLIPILEPTYGIILYQEQVMQIAQVLSGYSLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA++ G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++K HY
Sbjct: 719  EMAKQRDTFRDGAVENGVDAELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI ILV D  +   L ++PP++N  +Y F     +  +   I 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVILV-DECEHMKLKLIPPDVNSGEYKF-----TVNRQGHIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  +EAI+  R K G FT+LFDF  ++D K +NRR+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPVEAILAARAKHGTFTDLFDFCNKVDLKQLNRRVIEKLILSGAMDQLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++A+++ A+K AE+  K   + Q  LF             + +VP W  +  L  
Sbjct: 893  PHRAAMMATLEEAMKGAEQQAKAEAMGQSDLFGLMAPEPEHAASAFKQVPIWPDEVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV---SGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+  +    L +++P     V   +G++  ++     +G +
Sbjct: 953  ERETLGLYLTGHPINRYLVELPHYSSGRLVDMQPGRRDQVVHAAGLVLAVRTMINKKGRR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
              I+ +DD S  ++V    + +E  +++L+++++L+VSG+V  D F   + ++  ++ DI
Sbjct: 1013 WAIVTLDDKSARLDVRFFPEQFENFEHLLQKDKILVVSGQVSFDDFSGGLTMSGREVVDI 1072

Query: 1066 NVAR 1069
              AR
Sbjct: 1073 IAAR 1076


>gi|251791881|ref|YP_003006601.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
 gi|247533268|gb|ACS96514.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
          Length = 1158

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1158 (42%), Positives = 740/1158 (63%), Gaps = 39/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+A+TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMALTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + +++  ++  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGADVLVQSDLCGEERFRLTLLAKNNEGYKNITLLLSKAY----ERGYADVPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRT--GVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               IQ  + +A   +LP+VAT+ + FL++ +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  EEYIQAALTLAEQTDLPVVATNDVCFLQEDDFEAHEIRVAIHDGYTLEDPKRPKNYTGQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IP
Sbjct: 297  EGLEERLKVLFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNNIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       +N +PL+D  
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDINTIPLDDHQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ +L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAIKNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q  +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQRNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVSRYLKELSHYSPVRLKELTPNYRGQMSTASGLVVNTRIAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  +K    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALDKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNR-TFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
              I+ AR  Y K  ++  N+   N + +K  K +L     N LP  +YY ++   +  +K
Sbjct: 1069 MTIDEARARYAKSLAICLNQEQINTTFIKQFKAILEPYSGNTLPVHIYY-LSPQGRALVK 1127

Query: 1120 FPLNYKVQPIDDLKLALI 1137
              + + V P D+L   L+
Sbjct: 1128 MGVQWSVNPTDELLGELV 1145


>gi|325278077|ref|ZP_08143596.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51]
 gi|324096784|gb|EGB95111.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51]
          Length = 1174

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1182 (42%), Positives = 739/1182 (62%), Gaps = 51/1182 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A A    PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+ LL  N  GY  L EL+S+ + +    G   ++ EW+    
Sbjct: 65   CGADLWLAGADPEAPLSRICLLAMNPKGYRNLTELISRGWTDGQRNGLVILQREWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR+D A+   + W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALLAGRDDEAQALLQDWMGMFPERFYVEVQRTNRARDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +  P+VAT+ ++F+K+++F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADRLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSS 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  GL++
Sbjct: 243  EEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDVNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   +  DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNDDG---RIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +RID K +N+R +++L+ SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLKEYL 933
              F+++           R  L++++  A+K AE+     +   + LF    D  ++  Y 
Sbjct: 895  PHFHDEIKAYHAHIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMFDAADVDVYA 954

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP+    T++G+
Sbjct: 955  NHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRETQTIAGM 1014

Query: 993  ITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            I  L++    +G K+  + +DD S  +E  +    Y   +++L+ + +++V G+V  D F
Sbjct: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAYIAAQSLLQADAMVVVEGEVSNDDF 1074

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLY 1107
               +R+  +++  +  AR    +   +       +   +  L +++ R   +   P  L 
Sbjct: 1075 SGGLRLRVKQVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRH--RGACPITLE 1132

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1133 YT-GSDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173


>gi|386823768|ref|ZP_10110910.1| DNA polymerase III subunit alpha [Serratia plymuthica PRI-2C]
 gi|386379308|gb|EIJ20103.1| DNA polymerase III subunit alpha [Serratia plymuthica PRI-2C]
          Length = 1162

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1160 (43%), Positives = 743/1160 (64%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + ++L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFHVQSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSGA  GD+G  +  G     +     + + FPD++Y+E+ R  +P+    
Sbjct: 122  IEHREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAVVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  NEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  T      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKTGLEPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGQYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L++S+  ALK A++  K   I Q+ +F        +   +Y  VP W ++  L
Sbjct: 893  LGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1013 GNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTAREL 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  + +++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARAKLR 1131

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1132 FGATWRVTPTDRLLIDLRTL 1151


>gi|254282070|ref|ZP_04957038.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
 gi|219678273|gb|EED34622.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
          Length = 1142

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1145 (41%), Positives = 716/1145 (62%), Gaps = 44/1145 (3%)

Query: 10   LHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDV 69
            +H+EYS++DGL++I  ++ A A    PA+AITDL+N +G+IK YK+A + GIK I+G D 
Sbjct: 1    MHTEYSLVDGLVKIKPLMSALAAAKMPAVAITDLTNFYGLIKAYKAAASAGIKLIVGADF 60

Query: 70   WITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGL 129
            W+ +  +  +   L LL ++  GY  L  L+++A+ +  ++GRA ++  WL    + +GL
Sbjct: 61   WVVDPDDPDRHHSLCLLAQDETGYQNLTTLITRAWRDGQHHGRASVQRAWL--GDHAEGL 118

Query: 130  IALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINI 189
            IALSG  LG +G  +     + A      + + FPD FYIE+QR  +P     I   + +
Sbjct: 119  IALSGGRLGHVGQLLLLQHPEEARQALIDYQRDFPDRFYIELQRTGRPGEEDYIHAAVAL 178

Query: 190  ASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIK 249
            A+ ++ P+VAT+ ++FL  +EF AHE R CI EG  L + +R + ++++Q  ++  EM  
Sbjct: 179  AAELDCPVVATNDVRFLTPSEFEAHEARVCIGEGRTLDDPRRPRDYSEKQFLRSAEEMAA 238

Query: 250  LFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNL 309
            LF DIP AI+NT+EIA+RC++ +  G+P LP FP P+  +   FL   +  GL  RL  L
Sbjct: 239  LFSDIPEAIENTVEIARRCSVSIRLGEPFLPNFPVPEEHSTESFLAHLANEGLAVRLRAL 298

Query: 310  Y-KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGA 368
               DP  Y+       +RL FE++ I +M F GYFL+V DFI+WAK   IPVGPGRGSGA
Sbjct: 299  GNPDPAPYQ-------ERLDFELKIINEMGFPGYFLVVMDFIRWAKQQGIPVGPGRGSGA 351

Query: 369  SSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDA 428
             SLVAY+L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC + RD VI YV D YG++A
Sbjct: 352  GSLVAYALEITDLDPLTYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVIDYVADMYGREA 411

Query: 429  VSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAER 488
            VSQI+TFGTMAAK  +RDV RV D  +   D +SKLIPF+ G  +TL  A+++E  + + 
Sbjct: 412  VSQIITFGTMAAKAVVRDVARVQDKPFGLADKMSKLIPFEVG--MTLEKALRQEDAIKDL 469

Query: 489  IKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKD 548
            ++ +   +++ ++A Q+EG  RNVG HAGGV+IAPS+L +F PLY  E   G+++QYDK+
Sbjct: 470  LREDSAAQEIWDMAVQLEGATRNVGKHAGGVVIAPSRLTDFSPLYCDEEGGGVVTQYDKN 529

Query: 549  DIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYNLLKKAN 606
            D+EE GL+KFDFLGL TL+I+D  +  I  ++         ++ LPL+D   + +L++A 
Sbjct: 530  DVEEAGLVKFDFLGLRTLTIIDWAVRMIDERRAREGEAKLDISTLPLDDPAVFKVLQQAE 589

Query: 607  TVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYP 663
            T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YP
Sbjct: 590  TTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREQVSYP 649

Query: 664  D-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
            D     P  + +L  TYGI++YQEQVMQIAQ L GY+LG ADLLRRA+GKKK  EM + R
Sbjct: 650  DAQYQHPVLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKKKLEEMAKQR 709

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
              F  GA + G+    A  IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK HY + FMA
Sbjct: 710  SVFAEGASRKGIDPDLATRIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPAEFMA 769

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAI 838
            A +S  +D+T+K+ I ++D  K  G+++ PP+ N  +Y F     S     +I YGLGAI
Sbjct: 770  AVMSSELDNTDKL-ITLRDECKQLGITVRPPDANEGEYAF-----SVNDRGEIIYGLGAI 823

Query: 839  KGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            KG G+  +E+I+  R  G F +LF+F  R D + +NRR I +LINSGA D    +R++++
Sbjct: 824  KGLGEGPVESILAARNAGPFVDLFEFCDRTDPRKVNRRAIEALINSGALDGLGVERWIMM 883

Query: 899  ASIDVALKNAEKTK--KFINQLSLFKN--DDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
            ++++ AL+ AE+           LF +     +    Y ++     WS K+ L  EK+ +
Sbjct: 884  SAVEDALRAAEQAANNTAAGMGDLFGDVLAAGHRHDPYEHHRNARPWSSKRLLNGEKESI 943

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDN 1014
            G  LS H    YE E+R+F    + +L+   S TV+G+I  ++   T RG + ++ IDD 
Sbjct: 944  GSFLSGHPMEEYEAEVRKFASRRIRDLQADNSATVAGLIVSVRTIRTQRGVLAVLGIDDG 1003

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            S  +E  +   +Y +N+ +L+++ ++++ G++  D F   + +  + +  +  AR     
Sbjct: 1004 SGQIEATVFADIYSENRELLEKDRIVLLEGRLQTDEFSGGLNLRVKSVRSLEQAR---EG 1060

Query: 1075 KFSVMFNRTFNISI-------LKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            + + M  R     +       L+++LL+++     P  + Y      +  ++    ++V 
Sbjct: 1061 RITAMLVRMDRAQLDSGLRQSLRELLLKYRGGE-CPICIDYQ-QPLGQARIRLGSQWQVT 1118

Query: 1128 PIDDL 1132
            P D L
Sbjct: 1119 PTDSL 1123


>gi|82542783|ref|YP_406730.1| DNA polymerase III subunit alpha [Shigella boydii Sb227]
 gi|81244194|gb|ABB64902.1| DNA polymerase III alpha subunit [Shigella boydii Sb227]
          Length = 1142

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1109 (44%), Positives = 719/1109 (64%), Gaps = 30/1109 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    
Sbjct: 122  IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 242  SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI 1092
            I+ AR  Y    ++ + +R  +  +L ++
Sbjct: 1073 IDEAREKYASGLAISLTDRQIDDQLLNRL 1101


>gi|307129835|ref|YP_003881851.1| DNA polymerase III subunit alpha [Dickeya dadantii 3937]
 gi|306527364|gb|ADM97294.1| DNA polymerase III alpha subunit [Dickeya dadantii 3937]
          Length = 1160

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1151 (43%), Positives = 727/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E    + + L +L  NN GY  L  L+S+AY          I   WL  
Sbjct: 64   PIIGADFYLQSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGADGPTIDRAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q GL+ LSG   GDIG  +  G   + E     + + FP  FY+E+ R  +P+    
Sbjct: 122  VEHQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ + F+ + +F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 182  LHAAVELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPKNYSVQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+  SK GL
Sbjct: 242  SEEEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDYLVMCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E+    +  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLTFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I  ++   +     +  +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F +LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  A+K+AE+  K   I Q  +F        +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLADAMKSAEQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +EV++     +K +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEVMLFTDALDKYQHLLEQDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RQDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              +++ P D L
Sbjct: 1132 AAWRITPTDGL 1142


>gi|381405593|ref|ZP_09930277.1| DNA polymerase III subunit alpha [Pantoea sp. Sc1]
 gi|380738792|gb|EIB99855.1| DNA polymerase III subunit alpha [Pantoea sp. Sc1]
          Length = 1160

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1154 (42%), Positives = 739/1154 (64%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +I+ AA    PA+AITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D  + +E+   + ++L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PVIGADFKVASELMGDELTQLTVLAANNTGYQNLTLLISRAYQRGYGVDGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSG   GD+G ++  G + +       + + FPD +Y+E+ R  +P+    
Sbjct: 122  MELQEGLILLSGGRRGDVGRSLLRGNSALVSQCLSFYQQHFPDRYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + F+ + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   D+L++KS+ GL
Sbjct: 242  SEAEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D      ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLVFLFPDEAERLQKRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL    + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPAMYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEHGQFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIASIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN S  Y F + ++     
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDIN-SGLYPFHVNDA----G 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L++++  ALK A++  K   I Q  +F        +   +Y  V  W ++ +
Sbjct: 890  RLGPHRAALMSALGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTRWPEQVQ 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT        +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + ++
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAKL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   +++ P D L
Sbjct: 1129 RFGAAWRISPSDRL 1142


>gi|333928794|ref|YP_004502373.1| DNA polymerase III subunit alpha [Serratia sp. AS12]
 gi|333933747|ref|YP_004507325.1| DNA polymerase III subunit alpha [Serratia plymuthica AS9]
 gi|386330617|ref|YP_006026787.1| DNA polymerase III subunit alpha [Serratia sp. AS13]
 gi|333475354|gb|AEF47064.1| DNA polymerase III, alpha subunit [Serratia plymuthica AS9]
 gi|333492854|gb|AEF52016.1| DNA polymerase III, alpha subunit [Serratia sp. AS12]
 gi|333962950|gb|AEG29723.1| DNA polymerase III, alpha subunit [Serratia sp. AS13]
          Length = 1162

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1160 (43%), Positives = 743/1160 (64%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + ++L +L  NN+GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFHVQSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSGA  GD+G  +  G     +     + + FPD++Y+E+ R  +P+    
Sbjct: 122  IEHREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLDIELRVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  +      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKSGLEPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGQYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRRILEKLIMSGAFDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L++S+  ALK A++  K   I Q+ +F        +   +Y  VP W ++  L
Sbjct: 893  LGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1013 GNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTAREL 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  + +++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARAKLR 1131

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1132 FGATWRVTPTDRLLIDLRTL 1151


>gi|227326551|ref|ZP_03830575.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            carotovorum WPP14]
          Length = 1160

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1151 (42%), Positives = 729/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL ++  +++ AA    PALAITD +NL G++KFY  A+  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++    + + L +L  NN GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADFCVESDELGDELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q+GLI LSG   GD+G  +  G    AE     + + FP  +Y+E+ R  +P+    
Sbjct: 122  IEHQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELIRTSRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   +P+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELATKHGIPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVQCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++         +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q+ +F    +   +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +E+++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPADAL 1142


>gi|157372010|ref|YP_001479999.1| DNA polymerase III subunit alpha [Serratia proteamaculans 568]
 gi|157323774|gb|ABV42871.1| DNA polymerase III, alpha subunit [Serratia proteamaculans 568]
          Length = 1162

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1160 (43%), Positives = 739/1160 (63%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + ++L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFHVQSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSGA  GD+G  +  G     E     + + FPD++Y+E+ R  +P+    
Sbjct: 122  IEHREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDSYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL   +F AHE+R  I +G  L + KR + +T +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFLVADDFDAHEIRVAIHDGFTLDDPKRPRNYTSQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             + EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  DEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EDRLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  T      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKTGLEPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGQYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ S+  ALK A++  K   I Q+ +F        +   +Y  VP W ++  L
Sbjct: 893  LGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPLWQEQVVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1013 GNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTAREL 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  + +++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARAKLR 1131

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1132 FGATWRVTPTDRLLIDLRTL 1151


>gi|251790730|ref|YP_003005451.1| DNA polymerase III subunit alpha [Dickeya zeae Ech1591]
 gi|247539351|gb|ACT07972.1| DNA polymerase III, alpha subunit [Dickeya zeae Ech1591]
          Length = 1160

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1151 (43%), Positives = 728/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY  A++ GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E    + + L +L  NN GY  L  L+S+AY          I   WL  
Sbjct: 64   PIIGADFYLQSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGYGADGPTIDRAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q GL+ LSG   GDIG  +  G   + E     + + FP  FY+E+ R  +P+    
Sbjct: 122  VEHQAGLLLLSGGRHGDIGKFLLRGNQALVEQCVAFYQQHFPQRFYLELTRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP++AT+ + F+ + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVTLATAHGLPVIATNEVCFISQDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+  +K GL
Sbjct: 242  SEDEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDYLVMCAKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEDVRAQRRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        +
Sbjct: 479  PQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I     K       +  +PL+DK+++ 
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLEPVDIAAIPLDDKNSFG 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA + G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFKEGAERMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F +LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  A+K+A++  K   I Q  +F        +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMNSLADAMKSADQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++   ++ D
Sbjct: 1013 RIGVCTLDDRSGRLEVMLFTDALEKYQHLLEQDRILIASGQVSFDDFSGGLKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RQDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 AAWRVTPTDVL 1142


>gi|372267438|ref|ZP_09503486.1| DNA polymerase III subunit alpha [Alteromonas sp. S89]
          Length = 1172

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1097 (43%), Positives = 710/1097 (64%), Gaps = 39/1097 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HSEYS+IDGL+RI  +I   A    PA+AITD +N +  +KFYK+    G
Sbjct: 1    MTQPFVHLRVHSEYSLIDGLVRIKPLIGRVAELEMPAVAITDQTNFYAQVKFYKACMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKP+ G D W+  E   ++P+ + L   N++GY  + EL+S+A++E   +G A +  EW+
Sbjct: 61   IKPVTGADFWL-KEGGEEQPTLVSLYAMNSDGYRNITELISRAWMEGQYHGHAFVEREWI 119

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    +G++ LSGA  GD+G A+  GR   AE  A+ WS IFP  +Y+E+QR  +    
Sbjct: 120  KEAS--EGVLMLSGAKYGDVGRALVAGRASQAEALAQEWSSIFPGRYYLELQRTGRAGDE 177

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   +++A  +NLP+VAT+ ++F++ +EF AHEVR CI EG  L + +R ++++ EQ 
Sbjct: 178  EYLHAAVDLAGEMNLPVVATNDVRFIEDSEFEAHEVRVCIREGRALDDPRRERRYSAEQY 237

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM +LF DIP A++NT+EIA+RC+  ++ GK  LP+FP P+ +  N F    S  
Sbjct: 238  LRTPEEMHELFKDIPEALENTVEIARRCSSPIQLGKYFLPQFPIPEGMTENQFFEKISFD 297

Query: 301  GLKKRLLN-LYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL +RL + L K    Y+  K  Y+ RL+FE++ +I+M F GYFLIV DFIQWAK++ IP
Sbjct: 298  GLYERLEHILDKSAPDYEARKKEYEDRLRFELDIVIQMGFPGYFLIVMDFIQWAKDHDIP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SL+AYS  ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC E RDRVI Y
Sbjct: 358  VGPGRGSGAGSLIAYSQKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEKRDRVINY 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP   G  +TL  A 
Sbjct: 418  VAENYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPADVG--MTLQKAF 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L E ++N+EE +++ E+A Q+EG+ RNVG HAGGV+IAP+KL +F PLY  E   
Sbjct: 476  EQEEILREFLENDEEGQEIWEMALQLEGVARNVGKHAGGVVIAPTKLTDFAPLYCDETGA 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILD--KTIYFIKKINTKTTNFSLNKLPLNDKD 597
            G+++Q+DK+D+E+ GL+KFDFLGL TL+I+D  K +   ++         +  LPL+D +
Sbjct: 536  GLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAKAMVDEQRAREGKEPLVIEALPLDDSE 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            T+ L+K+A T AVFQLES+GMK+++K  +PD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 596  TFKLIKRAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQSGMVDDFINRK 655

Query: 656  HGE-YFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG     YPD      + K +L  TYG++VYQEQVMQIAQ L GY+LG AD+LRRA+GKK
Sbjct: 656  HGRAQVAYPDAKYQHEKLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK
Sbjct: 716  KPEEMAKQRATFEEGAKEQGVDPDLAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA +S  MD T+K+ I +++  +  GL ++PP++NL  Y F     S   + 
Sbjct: 776  AHYPAQFMAATMSSDMDKTDKVVIFIEEC-RAMGLDLVPPDVNLGSYQF-----SVDVNN 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  I+ I+ ER+ G  F +LFDF  RID + +N+R + +L+ SGA D
Sbjct: 830  RIIYGLGAIKGLGEGPIDNIIAERESGGPFADLFDFCSRIDPRKVNKRALEALVRSGALD 889

Query: 889  C----------FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKN--DDNNNLKEYLN 934
                        +  R +L  ++D A+K+AE+  K      + LF       ++   Y +
Sbjct: 890  SIGPDTNSADGLDYSRAVLFNALDEAVKSAEQQSKNDSAGMMDLFGEVVRSASDGDVYED 949

Query: 935  YVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY-SCTVSGII 993
            +     WS ++ L  EK  LG  L+ H    YE E++  +   +++LKP   +  V+G++
Sbjct: 950  FRGARPWSIRERLEGEKNTLGLYLTGHPIDEYEEELKHLVNARIADLKPGRENQKVAGLV 1009

Query: 994  TELKLKTTYRGKILIIV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
              +++  T RG  + IV +DD S  +E  + ++ + +++  L ++ LL++ G +  D + 
Sbjct: 1010 VGMRVMKTKRGDSMAIVSLDDRSARIEAAVFSEAFGEHREKLVKDSLLVLEGSISHDDYS 1069

Query: 1053 KNIRINAEKIFDINVAR 1069
              ++++   +  ++  R
Sbjct: 1070 GGLKMSVNSVSTLDDLR 1086


>gi|167032174|ref|YP_001667405.1| DNA polymerase III subunit alpha [Pseudomonas putida GB-1]
 gi|166858662|gb|ABY97069.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1]
          Length = 1174

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1182 (41%), Positives = 739/1182 (62%), Gaps = 51/1182 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A A    PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+  L  N  GY  L EL+S+ + +    G   ++ EW+    
Sbjct: 65   CGADLWLAGADPEAPLSRICFLAMNPQGYRNLTELISRGWTDGQRNGLVILQREWIAPAS 124

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+ NGR+D A+   + W  +FP+ FY+E+QR  +      + 
Sbjct: 125  --EGLIALSAGKEGDIGMALLNGRDDEAQALLQDWMGMFPERFYVEVQRTNRARDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A     P+VAT+ ++F+K+++F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADKFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRGYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  GL++
Sbjct: 243  EEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSYEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K++E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKNNLPDLNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHADYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   + +DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNNDG---RIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF  RID K +N+R +++L+ SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCDRIDLKRVNKRTLDALVRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLKEYL 933
              F+++           R  L++++  A+K AE+     +   + LF +  D   +  Y 
Sbjct: 895  PHFHDEIKAYQANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDEAQVDVYA 954

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP+    T++G+
Sbjct: 955  NHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRETQTIAGM 1014

Query: 993  ITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            I  L++    +G K+  + +DD S  +E  +    Y   +++L+ + +++V G+V  D F
Sbjct: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAYIAAQSLLQADAMVVVEGEVSNDDF 1074

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLY 1107
               +R+  +++  +  AR    +   +       +   +  L +++ R   +   P  L 
Sbjct: 1075 SGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRH--RGACPITLE 1132

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1133 YT-GSDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173


>gi|270264805|ref|ZP_06193069.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13]
 gi|270041103|gb|EFA14203.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13]
          Length = 1183

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1160 (43%), Positives = 744/1160 (64%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 25   PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 84

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + ++L +L  NN+GY  L  L+S+AY          I  +WL  
Sbjct: 85   PIIGADFHVQSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAGPIIDRDWL-- 142

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSGA  GD+G  +  G     +     + + FPD++Y+E+ R  +P+    
Sbjct: 143  IEHREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYLELIRTGRPDEENY 202

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 203  LHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYMR 262

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 263  SADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVLKSKEGL 321

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 322  EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 381

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 382  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 441

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 442  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 499

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 500  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 559

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  +      +  +PL DK +++
Sbjct: 560  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKSGLEPIDIAAIPLEDKKSFD 619

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 620  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 679

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 680  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 739

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 740  EMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 799

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y+F   +  +G   +I 
Sbjct: 800  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGQYHFH--VNDEG---EIV 853

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 854  YGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRRILEKLIMSGAFDR 913

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L++S+  ALK A++  K   I Q+ +F        +   +Y  VP W ++  L
Sbjct: 914  LGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVL 973

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 974  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKR 1033

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1034 GNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTAREL 1093

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  + +++
Sbjct: 1094 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARAKLR 1152

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1153 FGATWRVTPTDRLLIDLRTL 1172


>gi|387774001|ref|ZP_10129281.1| DNA polymerase III, alpha subunit [Haemophilus parahaemolyticus
            HK385]
 gi|386903088|gb|EIJ67908.1| DNA polymerase III, alpha subunit [Haemophilus parahaemolyticus
            HK385]
          Length = 1157

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1161 (43%), Positives = 747/1161 (64%), Gaps = 43/1161 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M+P+F+HL++HS++S+I+GL ++  +++ A  D   A+A+TD SN  G++KFY  A + G
Sbjct: 1    MLPRFVHLKVHSDFSMINGLAKVKPLVKNAVADNMVAMALTDFSNFCGLVKFYGEALSSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI--- 117
            +KPIIG D+ +    E ++   L LL KNN GY  +  LLSKAY      G  ++ I   
Sbjct: 61   LKPIIGADILVRAIPETEELDELTLLAKNNKGYHNITMLLSKAY----QQGYVDLPIVEK 116

Query: 118  EWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
            EWL   +Y +G+I LSG  LGD+G A+       AEN    + + FP++FY+ + R  + 
Sbjct: 117  EWL--TEYNEGIIVLSGGRLGDVGKALLKENAKEAENLTAFYQQYFPEHFYLSLCRTGRT 174

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
            +    I+  +  AS  N+P+VA + + FLK  +F AHE+R  I +   L + KR KK++ 
Sbjct: 175  DEENYIKAAVPFASQHNIPLVAVNDVVFLKPDDFDAHEIRVAIHDSYTLDDPKRPKKYSA 234

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q F+T+ EM +LF DIPSA+ NT+EIAKRC++ +  G+  LP FPT   ++  D+L+ K
Sbjct: 235  QQYFRTEEEMCRLFADIPSALANTVEIAKRCSVTIRLGEYFLPNFPT-GELSTEDYLVQK 293

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            S+ GL++RL  L+ D E  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K N 
Sbjct: 294  SREGLEERLEFLFPDEEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKENG 353

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            IPVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI
Sbjct: 354  IPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 413

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             +V D YG+ AVSQI+TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL  
Sbjct: 414  DHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPLDPG--MTLEK 471

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY-KQE 536
            A   EP+L E   ++EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY   E
Sbjct: 472  AFAAEPKLPELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSE 531

Query: 537  GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLN 594
            GM   ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I  + ++       +  +PL+
Sbjct: 532  GMHP-VTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARMLSEGKEPVRIESIPLD 590

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            DK +++LL ++ T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF 
Sbjct: 591  DKKSFDLLLQSKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFI 650

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E  +YPD +      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+
Sbjct: 651  DRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAM 710

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   R+ F+ GAI  G+  + A +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 711  GKKKPEEMAAQREIFEKGAINKGIDGNLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 770

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK H+ + FMAA +S  MD+T+KI + + D     GL+++PP+IN  K+ F     S  
Sbjct: 771  WLKAHFPAEFMAAVMSSEMDNTDKI-VGLYDECMNMGLTVVPPDINSGKHRF-----SVN 824

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            +  +I YGLGAIKG G+  I+ I++ R+  G F +LFD T R+D K INRR  ++LI SG
Sbjct: 825  EKGEIVYGLGAIKGVGEGPIDTILSARQQDGIFKDLFDLTARVDLKKINRRTFDALIMSG 884

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            + D     R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS+
Sbjct: 885  SLDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSE 944

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKT 1000
            +  L  E+  LG  LS H    +  E+  + P+ L+EL+PT+   + TV+G++   ++  
Sbjct: 945  QTILEGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTFRGQNATVAGMVVGYRVAV 1004

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T RG +I I  I+D S  +++ + ++  E   ++++++ ++I +G +  D F   ++++A
Sbjct: 1005 TKRGSRIGIATIEDRSGRLDITLFSEALETYGDLIEKDGIIIATGSIQFDDFSGGLKMSA 1064

Query: 1060 EKIFDINVARILYGKKFSVMFNR-TFNISILKKI---LLRFKCKNGLPFVLYYCINKSIK 1115
             +I  ++ AR    K  ++  N+   +   +K++   +  +K +  LP   YY  N+  +
Sbjct: 1065 REIMTLDDARTRNAKSLALAINQEQLDAKFVKELTACIAPYK-EGTLPLHFYYQ-NEQGR 1122

Query: 1116 YEMKFPLNYKVQPIDDLKLAL 1136
              +K  L ++V P + + + L
Sbjct: 1123 ALLKGGLEWRVTPSEKMLVGL 1143


>gi|421522634|ref|ZP_15969275.1| DNA polymerase III subunit alpha [Pseudomonas putida LS46]
 gi|402753734|gb|EJX14227.1| DNA polymerase III subunit alpha [Pseudomonas putida LS46]
          Length = 1174

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1182 (41%), Positives = 738/1182 (62%), Gaps = 51/1182 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A      PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+  L  +  GY  L EL+S+ + +    G   +R EW+    
Sbjct: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILRREWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR D AE   + W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALLAGRQDEAEVLLQDWMGMFPERFYVEVQRTNRARDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +  P+VAT+ ++F+K+T+F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADKLGAPLVATNDVRFIKQTDFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  GL++
Sbjct: 243  EEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   + +DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNNDG---RIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +RID K +N+R +++L+ SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLKEYL 933
              F+++           R  L++++  A+K AE+     +   + LF +  D  ++  Y 
Sbjct: 895  PHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYA 954

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP+    T++G+
Sbjct: 955  NHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGM 1014

Query: 993  ITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            I  L++    +G K+  + +DD S  +E  +    +   +++L+ + +++V G+V  D F
Sbjct: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDF 1074

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLY 1107
               +R+  +++  +  AR    +   +       +   +  L +++ R   +   P  L 
Sbjct: 1075 SGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRH--RGACPITLE 1132

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1133 YT-GSDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173


>gi|451965813|ref|ZP_21919069.1| DNA polymerase III subunit alpha [Edwardsiella tarda NBRC 105688]
 gi|451315385|dbj|GAC64431.1| DNA polymerase III subunit alpha [Edwardsiella tarda NBRC 105688]
          Length = 1162

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1153 (43%), Positives = 736/1153 (63%), Gaps = 43/1153 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL + + +++  A    PA AITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLHVHSDYSMIDGLAKTSPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G DV + +E+   + + L +L  +N GY  L +L+S AY          I  +WL  
Sbjct: 64   PLVGADVLMRSEMMGDELASLTILASDNTGYQNLTQLISHAYQRGYGAEGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +Y+ GLI LSGA  GD+G  +  G           + + FPD +++E+ R  +P+    
Sbjct: 122  VQYRQGLILLSGARQGDVGKLLLRGNQASVNECVDFYQRYFPDCYFLELVRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VA++ ++FL+ ++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHMAVELAQQRDLPLVASNDVRFLEASDFDAHEIRVAIHDGYTLDDPKRPRNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF D+P A+QN++EIAKRCN+ +  G+  LP+FPT   +    FL+ K+  GL
Sbjct: 242  SEAEMCELFADLPEALQNSVEIAKRCNVTIRLGEYFLPQFPT-GEMTTEAFLVKKAHEGL 300

Query: 303  KKRLLNLYKD-PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            ++RL  L+ D  E  +C +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVG
Sbjct: 301  EERLTFLFPDEAERARC-RPPYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAYSL ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RDRVI +V 
Sbjct: 360  PGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVA 419

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            + YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + 
Sbjct: 420  EMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEA 477

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EPQL E  + +EEVR LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        
Sbjct: 478  EPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHP 537

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDK 596
            ++Q+DK D+E  GL+KFDFLGL TL+I++   + ++ IN +     L       +PL+D+
Sbjct: 538  VTQFDKSDVEYAGLVKFDFLGLRTLTIIN---WALEMINARRARHGLEPVDIAAIPLDDQ 594

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             ++++L++A T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  R
Sbjct: 595  KSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654

Query: 655  KHG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG E  +YPD        K VL  TYG+++YQEQVMQIAQ+L GYSLG ADLLRRA+GK
Sbjct: 655  KHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGGADLLRRAMGK 714

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F+ GA   G+    A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +L
Sbjct: 715  KKPEEMAKQRSVFEEGARNNGVDGELAMHIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y+F   +  +G  
Sbjct: 775  KTHYPAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGQYHFH--VNDEG-- 829

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
             +I YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRR++  LI SG
Sbjct: 830  -EIVYGIGAIKGVGEGPIEAIIEARNRGEQGYFKDLFDLCARTDTKKLNRRVMEKLIMSG 888

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L++S++ ALK AE+  +   I Q  +F        +   +Y  VP W  
Sbjct: 889  AFDRLGPHRAALMSSLNDALKAAEQHARAEAIGQADMFGVLAEEPEQVEKSYGSVPPWPP 948

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLK 999
            +  L  E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++ 
Sbjct: 949  QMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTERGKMTTAVGLVLGARVM 1008

Query: 1000 TTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
            TT RG +I +  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ 
Sbjct: 1009 TTKRGNRIGMCTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMI 1068

Query: 1059 AEKIFDINVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIK 1115
            A ++ DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +
Sbjct: 1069 ARELMDISEAREKYARGLAISLTDRQIDDQLLNRLREALEPHRSGTIPVHLYYQ-RADAR 1127

Query: 1116 YEMKFPLNYKVQP 1128
              ++F   ++V P
Sbjct: 1128 ARVRFGAAWRVTP 1140


>gi|422023707|ref|ZP_16370209.1| DNA polymerase III subunit alpha [Providencia sneebia DSM 19967]
 gi|414091722|gb|EKT53403.1| DNA polymerase III subunit alpha [Providencia sneebia DSM 19967]
          Length = 1160

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1154 (42%), Positives = 743/1154 (64%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++  A+   PALAITD +NL G++KFY +A+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKVASMGMPALAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E    + + L +L +NN GY  L  L+S+AY +        I  +WL K
Sbjct: 64   PIIGADFYVESEQLGDEVAHLTVLARNNEGYQNLTLLISEAYQKGYGALGPTIYRDWLVK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K   GLI LSG   GD+G  +  G   + +     +   FP ++Y+E+ R  +P+    
Sbjct: 124  HKA--GLILLSGGRQGDVGQFLLRGNQALVDECLSFYEMHFPGSYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F+   +F AHE+R  I +G  L + KR K ++ +Q  +
Sbjct: 182  LHAVVELATQRGLPVVATNDVRFIDSGDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ +SK GL
Sbjct: 242  TEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPT-GDMATEDFLVMRSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLQFLFPDEKVRAEKRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVSQ 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I++   + ++ IN +    SL       +PL D  
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIN---WALEMINARRAKKSLEPIDIAAIPLQDTK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+G K
Sbjct: 656  HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGXK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFKDGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R K G F  +FD   R+D K INRR++  LI +GAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARQKGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L++S++ ALK A++  K   I Q  +F        +   +Y  +P W ++  
Sbjct: 890  HLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVESSYASIPEWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI ++   + L ++ PT      TV G++   K+ TT 
Sbjct: 950  LDGERETLGLYLTGHPITRYLNEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSSKVITTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +++++ +   +K +++L+++ +LI +G+V  D F    ++   +
Sbjct: 1010 RGNRIGICTLDDRSGRLDIMLFSDALDKYQHLLEKDSILIATGQVSFDDFNGGNKMTVRE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + ++  N  +L ++   L       +P  LYY  + + + ++
Sbjct: 1070 LMDISEAREKYARGLAISLSDKQINDQLLNRLRSALEPYRSGTIPVHLYYQKDDA-RAKL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            KF + ++V P+D L
Sbjct: 1129 KFGVIWRVTPVDAL 1142


>gi|397697693|ref|YP_006535576.1| DNA polymerase III subunit alpha [Pseudomonas putida DOT-T1E]
 gi|397334423|gb|AFO50782.1| DNA polymerase III subunit alpha [Pseudomonas putida DOT-T1E]
          Length = 1174

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1182 (41%), Positives = 738/1182 (62%), Gaps = 51/1182 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A      PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+  L  +  GY  L EL+S+ + +    G   ++ EW+    
Sbjct: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR D AE   + W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +  P+VAT+ ++F+K+T+F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADKLGAPLVATNDVRFIKQTDFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  GL++
Sbjct: 243  EEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   + +DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNNDG---RIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +RID K +N+R +++L+ SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLKEYL 933
              F+++           R  L++++  A+K AE+     +   + LF +  D  ++  Y 
Sbjct: 895  PHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYA 954

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP+    T++G+
Sbjct: 955  NHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGM 1014

Query: 993  ITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            I  L++    +G K+  + +DD S  +E  +    +   +++L+ + +++V G+V  D F
Sbjct: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDF 1074

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLY 1107
               +R+  +++  +  AR    +   +       +   +  L +++ R   +   P  L 
Sbjct: 1075 SGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRH--RGACPITLE 1132

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1133 YT-GSDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173


>gi|421785166|ref|ZP_16221598.1| DNA-directed DNA polymerase III alpha subunit [Serratia plymuthica
            A30]
 gi|407752581|gb|EKF62732.1| DNA-directed DNA polymerase III alpha subunit [Serratia plymuthica
            A30]
          Length = 1162

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1160 (43%), Positives = 743/1160 (64%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E+   + ++L +L  NN+GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFHVQSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSGA  GD+G  +  G     +     + + FPD++Y+E+ R  +P+    
Sbjct: 122  IEHREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
               EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  NADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  +      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKSGLEPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGQYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRRILEKLIMSGAFDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L++S+  ALK A++  K   I Q+ +F        +   +Y  VP W ++  L
Sbjct: 893  LGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++     EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1013 GNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTAREL 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  + +++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARAKLR 1131

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1132 FGATWRVTPTDRLLIDLRTL 1151


>gi|387890457|ref|YP_006320755.1| DNA polymerase III subunit alpha [Escherichia blattae DSM 4481]
 gi|414593645|ref|ZP_11443287.1| DNA polymerase III subunit alpha [Escherichia blattae NBRC 105725]
 gi|386925290|gb|AFJ48244.1| DNA polymerase III alpha subunit [Escherichia blattae DSM 4481]
 gi|403195253|dbj|GAB80939.1| DNA polymerase III subunit alpha [Escherichia blattae NBRC 105725]
          Length = 1160

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +I  +++ AA    PA+AITD +N+ G++KFY  A+  G+K
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKKAAALGMPAMAITDFTNMCGLVKFYNGAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG DV +  E+   +   L +L  NN+GY  L  L+S+AY          I   WLE+
Sbjct: 64   PVIGADVHMACELFPDELCDLTILAMNNDGYQNLTLLISRAYQRGYGAEGPWIDQAWLEE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                DGLI LSGA  GD+G A+  G + +AE     + + F D +Y+E+ R  + +    
Sbjct: 124  --LNDGLILLSGARHGDVGKALVRGNHVLAEQALSFYQQHFADRYYLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A     P+VAT+ ++F ++ EF AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALAEETGTPVVATNDVRFREQDEFEAHEIRVAIHDGFTLDDPKRPRNYSAQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QNT+EIAKRCN+ +  G   LP+FPT  ++   D+L+ KS  GL
Sbjct: 242  SEDEMCELFADIPEALQNTVEIAKRCNVTVRLGTYFLPQFPT-GDMTTEDYLVKKSHEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+    ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDPDERAQKRPPYDERLETELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITD+DPL  +LLFERFLNP R+SMPDFD+DFC E RDRVI++V +
Sbjct: 361  GRGSGAGSLVAYSLKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDRVIEHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARRLEGVTRNAGKHAGGVVISPTKITDFAPLYCDEQGQHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLEPVDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S++ ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCTPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L E+ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLKEIERYVGGMRLKEMHPTERGKVITAAGLVLAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDKL 1142


>gi|422404678|ref|ZP_16481729.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
 gi|330878150|gb|EGH12299.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
          Length = 1154

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1104 (44%), Positives = 706/1104 (63%), Gaps = 48/1104 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A      PA+A+TD +N+  ++KFYK+A   G
Sbjct: 1    MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SR+ LL  N  GY  L EL+S+ +IE    G+  I+ +W+
Sbjct: 61   IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+IALS A  G+IG+A+  G    A+   R W  +FP+ FYIE+QR  + N  
Sbjct: 121  AQAS--EGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRTNRNNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+T+F AHE R CI EG  L + +R   ++ +Q 
Sbjct: 179  EHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P A++NT+EIAKRCN+ ++ G   LP FP P  + I+++    S  
Sbjct: 239  LKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRLLNLY-KDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L  KD  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI+
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K +EE  ++ E+A ++EGI+RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   +PL+D 
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDM 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  DG  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVSDDG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  R+D K +N+R ++ LI SGA D
Sbjct: 832  -RILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A++ AE+T +  +         LF   D +
Sbjct: 891  RLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEADAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+ K    S K  L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +  + +   +++L+ + +++V G+
Sbjct: 1008 QTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVAR 1069
            V  D F   +R+ A+++  I  AR
Sbjct: 1068 VSNDDFSGGLRLRAKRVMSIEDAR 1091


>gi|406595875|ref|YP_006747005.1| DNA polymerase III subunit alpha [Alteromonas macleodii ATCC 27126]
 gi|406373196|gb|AFS36451.1| DNA polymerase III subunit alpha [Alteromonas macleodii ATCC 27126]
          Length = 1154

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1086 (45%), Positives = 697/1086 (64%), Gaps = 32/1086 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   FIHLR+HS++S++DGL ++  ++   A    PA+AITD  N+ G++KFY  A+N G
Sbjct: 1    MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D W+TNE+   +P RL L+  NN GY  +  L+SKAY+      RA I  EWL
Sbjct: 61   IKPIIGTDFWVTNEVFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLSHRAVIDQEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  + +G+IALSGA  GD+G+ +      I ++    +   FPD FY+E+ R  +    
Sbjct: 121  AE--HSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLELIRTGRQGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A    LP+VAT+ + F+ +  F AHE+R CI +G  L + +R K+++ +Q 
Sbjct: 179  DYLHLAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDNRRPKRYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM++LF DIP AI+NT+EIAKRCN+ +   +  LP+FPT   +   DFL+  S+ 
Sbjct: 239  LRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPT-GGMTTEDFLVKVSEE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ D E+ K ++  Y  RL+ E+E I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG+ AVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL  A K
Sbjct: 418  AELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFK 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQL E  +++EEV+ LI++A+ +EG+ RN G HAGGV+IAP+ + +F PLY  +    
Sbjct: 476  AEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGKN 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             ++Q+DK+D+E  GL+KFDFLGL TL+I+   I  IK+   K  +  ++ +PL D  ++ 
Sbjct: 536  PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKE--GKNVDVDISAIPLEDPKSFR 593

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 594  TLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 653

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  
Sbjct: 654  EEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPE 713

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 714  EMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHY 773

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  G+ ILPP++N  KY F   ++S+G   +I 
Sbjct: 774  PAEFMAAVMSADMDNTDKIVTLV-DECERMGIEILPPDLNTGKYKF--TVDSEG---RIV 827

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R+  G F +LFDF  +ID K +N+R++  L+ +GA D   
Sbjct: 828  YGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMDNLG 887

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+AS+  AL  A +  K     Q  +F     +  ++K+   +  VP W +K  L
Sbjct: 888  PHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQ--AFADVPEWPEKVWL 945

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              EK  LG  L+ H    Y  E+R +    L +LKPT      +  G++  +++ T  RG
Sbjct: 946  EGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMTNKRG 1005

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +  I+ +DD S  ++V     +YE+ +++L+ + +L++ G+V  D F     I A  + 
Sbjct: 1006 RRWAIVTLDDKSARIDVRFFPDMYEQFESVLETDRILLIKGQVSFDDFSGGNTITARDVM 1065

Query: 1064 DINVAR 1069
            DI  AR
Sbjct: 1066 DIVQAR 1071


>gi|407686741|ref|YP_006801914.1| DNA polymerase III subunit alpha [Alteromonas macleodii str.
            'Balearic Sea AD45']
 gi|407290121|gb|AFT94433.1| DNA polymerase III subunit alpha [Alteromonas macleodii str.
            'Balearic Sea AD45']
          Length = 1154

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1086 (45%), Positives = 697/1086 (64%), Gaps = 32/1086 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   FIHLR+HS++S++DGL ++  ++   A    PA+AITD  N+ G++KFY  A+N G
Sbjct: 1    MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D W+TNE+   +P RL L+  NN GY  +  L+SKAY+      RA I  EWL
Sbjct: 61   IKPIIGTDFWVTNEVFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLAHRAVIDQEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               ++ +G+I LSGA  GDIG+ +      I ++    +   FPD FY+E+ R  +    
Sbjct: 121  --AEHSEGVIVLSGAQQGDIGVGLMKNNAKILDSALEFYQTHFPDRFYLELIRTGRQGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A    LP+VAT+ + F+ +  F AHE+R CI +G  L +T+R K+++ +Q 
Sbjct: 179  DYLHLAVELAEQRGLPVVATNEVCFIDQEGFEAHEIRVCIHDGYTLDDTRRPKRYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM++LF DIP A++NT+EIAKRCN+ +   +  LP+FPT   +   DFL+  S+ 
Sbjct: 239  LRTAEEMVELFSDIPEALENTVEIAKRCNVTVRLNEYFLPQFPT-GGMTTEDFLVKVSEE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ D E+ K ++  Y  RL+ E+E I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG+ AVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL  A K
Sbjct: 418  AELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFK 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQL E  +++EEV+ LI++A+ +EG+ RN G HAGGV+IAP+ + +F PLY  +    
Sbjct: 476  AEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGKN 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             ++Q+DK+D+E  GL+KFDFLGL TL+I+   I  IK+   K  +  ++ +PL D  ++ 
Sbjct: 536  PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKE--GKNVDVDISAIPLEDPKSFR 593

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 594  TLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 653

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  
Sbjct: 654  EEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPE 713

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 714  EMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHY 773

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  G+ ILPP++N  KY F   ++S+G   +I 
Sbjct: 774  PAEFMAAVMSADMDNTDKIVTLV-DECERMGIEILPPDLNAGKYKF--TVDSEG---RIV 827

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R+  G F +LFDF  +ID K +N+R++  L+ +GA D   
Sbjct: 828  YGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMDNLG 887

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+AS+  AL  A +  K     Q  +F     +  ++K+   +  VP W +K  L
Sbjct: 888  PHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQ--AFADVPEWPEKVWL 945

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              EK  LG  L+ H    Y  E+R +    L +LKPT      +  G++  +++ T  RG
Sbjct: 946  EGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMTNKRG 1005

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +  I+ +DD S  ++V     +YE+ +++L+ + +L++ G+V  D F     I A  + 
Sbjct: 1006 RRWAIVTLDDKSARIDVRFFPDMYEQFESVLETDRILLIKGQVSFDDFSGGNTITARDVM 1065

Query: 1064 DINVAR 1069
            DI  AR
Sbjct: 1066 DIVQAR 1071


>gi|257464972|ref|ZP_05629343.1| DNA polymerase III subunit alpha [Actinobacillus minor 202]
 gi|257450632|gb|EEV24675.1| DNA polymerase III subunit alpha [Actinobacillus minor 202]
          Length = 1157

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1165 (43%), Positives = 745/1165 (63%), Gaps = 45/1165 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P+F+HL++HS++S+I+GL ++  +++AAA D   A+A+TD +N  G++KFY  +   G
Sbjct: 1    MSPRFVHLKVHSDFSMINGLAKVKSLVKAAAADNMVAMALTDFTNFCGLVKFYGESLASG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI--- 117
            IKPIIG D+ + +E E+++   L LL KNN GY  +  LLS AY      G  ++ +   
Sbjct: 61   IKPIIGADILVRSESESEEVYELTLLAKNNQGYHNITLLLSMAY----QQGYVDLPLVEK 116

Query: 118  EWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
             WL +  Y +G+I LSG   GD+G A+       AEN    + + FP++FY  + R  + 
Sbjct: 117  AWLAE--YNEGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSVCRTGRA 174

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
            +    I   +  A+   +PIVA + + FLK+ +F AHE+R  I +   L + KR KK++ 
Sbjct: 175  DEERYISAIVPFANQKGIPIVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSP 234

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q F+++ EM +LF D+PSA++NTIEIAKRC++ +  G+  LP FPT  ++   +FLI K
Sbjct: 235  QQYFRSEEEMCRLFADLPSALENTIEIAKRCSVTVRLGEYFLPNFPT-GDLTTEEFLIKK 293

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            S+ GL++RL  L+ DPE    ++  Y KRLQ E++ I +M F GYFLIV +FIQW+K+N 
Sbjct: 294  SEEGLEERLAFLFPDPEERASKREVYDKRLQVELDVINQMGFPGYFLIVMEFIQWSKDNG 353

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            IPVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI
Sbjct: 354  IPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 413

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             +V + YG+DAVSQI+TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL  
Sbjct: 414  DHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLEK 471

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A   EP+L E   ++EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY    
Sbjct: 472  AFAAEPKLPELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDSE 531

Query: 538  MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLP 592
                ++ +DK+D+E  GL+KFDFLGL TL+I+    + ++ IN + T        +  +P
Sbjct: 532  GLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALEMINARLTAEGKEPVRIESIP 588

Query: 593  LNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
            LNDK +++LL  A T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++N
Sbjct: 589  LNDKKSFDLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQN 648

Query: 651  FCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            F  RKHG E  +YPD +      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRR
Sbjct: 649  FIDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRR 708

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM   R+ F+ GAI+  +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY 
Sbjct: 709  AMGKKKPEEMAAQREIFEKGAIEKNIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 768

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            T +LK HY + FMAA +S  MD+T+KI  L  + I   GL+++PP+IN  K++F     S
Sbjct: 769  TLWLKAHYPAEFMAAVMSSEMDNTDKIVGLYDECI-NMGLTVVPPDINSGKHHF-----S 822

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLIN 883
              +  +I YGLGAIKG G+  I+AI+  R K G F +LFD T R+D K INRR  ++LI 
Sbjct: 823  VNEKGEIVYGLGAIKGVGEGPIDAILEARQKDGIFKDLFDLTARVDLKKINRRTFDALIM 882

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSW 941
            SG+ D     R  L+ +++ ALK +++  K   + Q  +F        +    Y   P W
Sbjct: 883  SGSLDKLGPHRAALMKNLEDALKASDQHTKMEALGQSDMFGVLTETPEEVQNAYANTPKW 942

Query: 942  SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKL 998
            S++  L  E+  LG  LS H    +  E+  + P+ L+EL+PTY     TV+GI+   ++
Sbjct: 943  SEQVVLDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRV 1002

Query: 999  KTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057
              T RG +I I  I+D S  +++ + ++  E   ++  ++ ++I +G V  D F   +++
Sbjct: 1003 AVTKRGSRIGIATIEDRSGKLDITLFSEALETYGDLFIKDSIIIATGSVQFDDFSGGLKM 1062

Query: 1058 NAEKIFDINVARILYGKKFSVMFNR-TFNISILKKILLRFKC-KNG-LPFVLYYCINKSI 1114
            +A +I  ++ AR+   K  ++  ++   N   +K++    +  K G LP   YY   +  
Sbjct: 1063 SAREIATLDEARVRNAKSLALAIHQEQLNAKFVKELTACIEPYKAGVLPLHFYYQSEQG- 1121

Query: 1115 KYEMKFPLNYKVQPIDDLKLALINL 1139
            +  +K  + ++V P +++   L NL
Sbjct: 1122 RVLLKSGVEWRVTPKEEMLTGLKNL 1146


>gi|389809728|ref|ZP_10205450.1| DNA polymerase III subunit alpha [Rhodanobacter thiooxydans LCS2]
 gi|388441627|gb|EIL97889.1| DNA polymerase III subunit alpha [Rhodanobacter thiooxydans LCS2]
          Length = 1179

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1090 (45%), Positives = 685/1090 (62%), Gaps = 55/1090 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  ++ HL LHSEYS++D  +RI  ++ A   D  PA+A+TD SN+F ++KFYK+    G
Sbjct: 1    MTVRYTHLHLHSEYSLVDSTIRIKALVAACVRDGIPAVALTDDSNMFALVKFYKACSAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI GCD+WI+   ++ +P RL LL ++  GYL L  L+S+A+ E  + GRA +   WL
Sbjct: 61   IKPIGGCDLWIS-PADDPRPWRLTLLCQHREGYLNLSRLVSRAWQEGQHGGRALVEAGWL 119

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                   GLIAL G    ++G    N   + A    R  +++FP+  Y+E+ R  +    
Sbjct: 120  NAGA-SSGLIALLGRE-SEVGRIALNQGVEAALARLRPLARLFPERLYLELTRCGREGEE 177

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
                  + +A+ + LP++A++ ++FL + +F AHE R CI +G +L++ KR + ++ +Q 
Sbjct: 178  NWNTAALALAAELGLPVLASNDVRFLTQDDFGAHEARVCIQQGRVLADPKRPRDYSNQQY 237

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM  LF DIP A++NT+E+AKRC L+L+FGK  LP FP P   +++  +   ++ 
Sbjct: 238  LKTPDEMAALFADIPEALENTVELAKRCTLELKFGKYYLPDFPVPAGHDLDSHIRGLARQ 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GLK+RL N    P         Y+ RL+ E++ I+KM F GYFLIV+DFI W K N IPV
Sbjct: 298  GLKERLANA---PLAADHTLADYEARLERELDVIVKMGFPGYFLIVADFINWGKQNGIPV 354

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVA++L ITD+DPL +NLLFERFLNP R+SMPDFDIDFC + RD VI YV
Sbjct: 355  GPGRGSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYV 414

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI- 479
              +YG+D VSQI+T+G+MAAK  +RD GRVL + Y   D ++K++P +P  L TLS+A+ 
Sbjct: 415  ARKYGRDRVSQIITYGSMAAKAVLRDSGRVLGMGYGQVDKLAKMVPPRPLDL-TLSDALG 473

Query: 480  -----KEEP-----QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
                 K+EP     +  E  + +E+   LI+LA ++E + RN G HAGGV+IAP+ L +F
Sbjct: 474  RSEKSKKEPDRVVREFCEAYEQDEDAHALIDLALKLENLTRNAGKHAGGVVIAPTPLTDF 533

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN 589
             PLY + G  G+++QYDKDD+E +GL+KFDFLGL TL+I+D  +  I     KT    L+
Sbjct: 534  APLYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAKTGEAPLD 593

Query: 590  --KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
               LPL+D   Y LLKKA TVAVFQLES GM+ MLK+AKPD FE+IIAL++LYRPGPMDL
Sbjct: 594  ISTLPLDDPAPYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGPMDL 653

Query: 648  IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            I +F  RKHG E   YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGYSLG ADLLRRA+
Sbjct: 654  IPSFVARKHGREEVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAM 713

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F+ GA K GLS  KA+ IF+ +EKFAGYGFNKSHA AYAL+SY TA
Sbjct: 714  GKKKLEEMAKERAKFREGAAKDGLSGEKADAIFDLMEKFAGYGFNKSHAAAYALVSYQTA 773

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA +S  MD+T+K+   + D  +  G+++ PP++N S+Y F  +     
Sbjct: 774  WLKAHYPAEFMAATISSDMDNTDKVVTFL-DESRAIGIAVQPPDVNASEYMFVAV----- 827

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
            + K I+YGLGAIKG G+   EAIV ER  G +T+L DF +R+D   +NRR++ +L+ SGA
Sbjct: 828  EPKVIQYGLGAIKGVGQGACEAIVAERTRGRYTDLADFCRRVDPTKLNRRVLEALVLSGA 887

Query: 887  FDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEY-LNYVKVPSWSK 943
             D     R  L+  +  A+K AE+    +   Q  +F     N      +    VP W  
Sbjct: 888  LDALAANRASLMLQLPDAIKAAEQHLRDRQSGQNDMFGAAMGNATPVLKIELPTVPEWPL 947

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK--------------------- 982
            +Q+L  E+  LG  LS H    ++ E+ Q     L E+                      
Sbjct: 948  EQKLQGERDTLGHYLSGHPTDPWKEELAQLSTCPLGEIADRYQPPKPRKNDDGDNNRFRR 1007

Query: 983  -PTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLI 1041
             P    TV+G++T ++ +         + ++D S  +EV    +LY++   +L  +E+L+
Sbjct: 1008 GPDTPWTVAGMVTAVRKRGDSDA---FVRLEDGSGIIEVSFFGELYQQIAPLLTRDEMLV 1064

Query: 1042 VSGKVLEDRF 1051
            V G +  D F
Sbjct: 1065 VDGGLRIDEF 1074


>gi|385785663|ref|YP_005816772.1| DNA polymerase III subunit alpha [Erwinia sp. Ejp617]
 gi|310764935|gb|ADP09885.1| DNA polymerase III subunit alpha [Erwinia sp. Ejp617]
          Length = 1160

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1151 (42%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++ AA+   PA+ ITD +NL G++KFY +A+ +G+K
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +++E    + +++ +L  +N+GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNVSSEAMGDELTQITVLAADNDGYQNLTLLISRAYQRGYGPAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q GLI LSG   GD+G  +  G           + + FPD +Y+E+ R  +P+    
Sbjct: 122  AEHQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYLELIRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FL +++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIA+RCN+ +  G+  LP+FPT   ++  DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPT-GEMSTEDFLVVKSKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDENGDHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  K+  +      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYQFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++++  ALK A++  K   I Q+ +F        +   +Y  V  W ++ +L  
Sbjct: 893  PHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPEQIQLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A  + D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKFQHMLEKDRILIVSGQVSFDDFNGGLKMMARDMMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +  ++G +P  LYY   +  + +++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQ-REDARAKLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|417853290|ref|ZP_12498701.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. Anand1_goat]
 gi|338219986|gb|EGP05574.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. Anand1_goat]
          Length = 1159

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1158 (42%), Positives = 735/1158 (63%), Gaps = 49/1158 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+I+G+ ++  +I+A  +++  A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PIIG DV + +E+   +P  L LL KNN GY  +  LLSKAY    +++ Y    +   W
Sbjct: 64   PIIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQDLPY----LDQAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++  +G+I LSG H GD+G  +  G     E+    +   FPD+FY+ + R  +   
Sbjct: 120  LAEHR--EGIIVLSGGHNGDVGKKLLKGHAAEIESAVTFYQDFFPDHFYLSLSRTGRYEE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A    LP+VAT+ + FL + +F AHE+R  I +   L + KR K++T +Q
Sbjct: 178  ERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKRPKRYTNQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  DFL+ KSK
Sbjct: 238  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDFLVKKSK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++ +  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct: 417  VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P  + +F PLY      
Sbjct: 475  AAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
              ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  INT+          +  +PL+
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINTRLAKEGKPPVDIATIPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  ++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF 
Sbjct: 592  DPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFI 651

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E   YPDP       K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+
Sbjct: 652  DRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAM 711

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   R+ F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 712  GKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 771

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTHY + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S  
Sbjct: 772  WLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRM-GLKVAPPDINTGKHHF-----SVN 825

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            +H +I YG+GAIKG G+  IEA+++ R + G F +LFD   R+D K INRR   SLI SG
Sbjct: 826  EHGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSG 885

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L  +++ ALK +++  K   + Q  +F     ++      Y   P WS+
Sbjct: 886  AFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRWSE 945

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
            K  L  E++ LG  LS H    Y  E+  +    L +L P       TVSG++   +   
Sbjct: 946  KVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAV 1005

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T +G ++ I  +DD S  +++ +  +  +K  + L+++ ++IVSG+V  D F   ++++ 
Sbjct: 1006 TKKGNRLGIATLDDRSGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSV 1065

Query: 1060 EKIFDINVARILYGKKFSVMFNR-----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
             ++  ++ AR  Y K  ++  +      TF I  LK +L  +     LP  +YY  + + 
Sbjct: 1066 RELMSLDEARSRYAKSLAICLSEENMKPTF-IRELKALLTPYSGGT-LPIYVYYA-STAG 1122

Query: 1115 KYEMKFPLNYKVQPIDDL 1132
            +  +K  + + V P D L
Sbjct: 1123 QCRVKMGVQWSVNPTDQL 1140


>gi|148549377|ref|YP_001269479.1| DNA polymerase III subunit alpha [Pseudomonas putida F1]
 gi|395445017|ref|YP_006385270.1| DNA polymerase III subunit alpha [Pseudomonas putida ND6]
 gi|148513435|gb|ABQ80295.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1]
 gi|388559014|gb|AFK68155.1| DNA polymerase III subunit alpha [Pseudomonas putida ND6]
          Length = 1174

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1182 (41%), Positives = 737/1182 (62%), Gaps = 51/1182 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A      PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+  L  N  GY  L EL+S+ + +    G   ++ EW+    
Sbjct: 65   CGADLWLAGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVILQREWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR D AE   + W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  GL++
Sbjct: 243  EEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   + +DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNNDG---RIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +RID K +N+R +++L+ SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLKEYL 933
              F+++           R  L++++  A+K AE+     +   + LF +  D  ++  Y 
Sbjct: 895  PHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYA 954

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP+    T++G+
Sbjct: 955  NHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGM 1014

Query: 993  ITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            I  L++    +G K+  + +DD S  +E  +    +   +++L+ + +++V G+V  D F
Sbjct: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDF 1074

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLY 1107
               +R+  +++  +  AR    +   +       +   +  L +++ R   +   P  L 
Sbjct: 1075 SGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRH--RGACPITLE 1132

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1133 YT-GSDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173


>gi|372271432|ref|ZP_09507480.1| DNA polymerase III subunit alpha [Marinobacterium stanieri S30]
          Length = 1166

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1164 (42%), Positives = 738/1164 (63%), Gaps = 45/1164 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSEYS+ DGL+RI  ++  AA    PA+AITD +NLF ++KFYK+A   G+K
Sbjct: 4    PAFVHLRVHSEYSLFDGLVRIKSLVSTAAAQNMPAVAITDQTNLFALVKFYKAALGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPS-RLLLLVKNNNGYLQLCELLSKAYIE--NINYGRAEIRIEW 119
            P+ G D+W+ N  E +    R+ L+V+N  GY  L EL+S+AY E  NI   RA +R +W
Sbjct: 64   PLCGVDLWVENPEEPEGEPFRITLMVRNGQGYRNLMELVSRAYAEGQNIVPERALVRKDW 123

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            + +    DGLIALSG  LGD+G A+ +G  D AE     W  +FPDN+Y+EIQR  +P  
Sbjct: 124  IAEKA--DGLIALSGGRLGDVGRALLSGNPDQAEILLAEWQAMFPDNYYLEIQRTGRPGD 181

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A+    P+VAT+ + FLK+ +F AHE R CI  G  L + +R + ++ +Q
Sbjct: 182  EALVHASVELAARKGCPLVATNEVMFLKQEDFEAHEARVCINLGRTLEDPQRPRNYSDQQ 241

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F++  EM +LF DIPSA++NT+EIA+RCN+++E G   LP+FP P+ + ++DF    S 
Sbjct: 242  YFRSAEEMAELFSDIPSALENTVEIARRCNIEIELGTYYLPRFPVPEGMLMDDFFRQVSW 301

Query: 300  HGLKKRLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
             GL++RL  L    DP+ Y+ ++  Y+KRL+FE++ II+M F GYFLIV DFI+W K N 
Sbjct: 302  DGLEERLEFLLDKNDPD-YQEKRKPYEKRLEFELDIIIQMGFPGYFLIVMDFIKWGKENG 360

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            IPVGPGRGSGA SLVAY L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI
Sbjct: 361  IPVGPGRGSGAGSLVAYVLKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDQVI 420

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YV  +YG+DAVSQI+T+GTMAAK  +RDV RV    +   D +SKLIPF+ G  +TL+ 
Sbjct: 421  DYVARKYGRDAVSQIITYGTMAAKAVVRDVARVQGKPFGLADRLSKLIPFEVG--MTLNK 478

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A ++E  L + +   EE  +++E+A ++EG+ RNVG HAGGV+IAP+KL +F   Y  E 
Sbjct: 479  AWEQEDALRDFVNGNEEAEEIMEMAYKLEGVTRNVGKHAGGVVIAPTKLTDFAATYCDEE 538

Query: 538  MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLP 592
              G+++Q+DK+D+EE GL+KFDFLGL TL+I+D   + +K IN K          +  + 
Sbjct: 539  GHGLVTQFDKNDVEEAGLVKFDFLGLRTLTIID---WALKTINHKREKEGEGPLEIESID 595

Query: 593  LNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
            L D  T+ LL+ A T AVFQLES GMK++++   P+ FE+I+AL++L+RPGP+   ++ +
Sbjct: 596  LEDPATFKLLQSAQTTAVFQLESSGMKDLIRRLLPNRFEDIVALVALFRPGPLQSGMVDD 655

Query: 651  FCRRKHGEY-FNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            F  RKHG     +P P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRR
Sbjct: 656  FINRKHGRAPLAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAGYTLGGADMLRR 715

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM + R  F  G    G+ K  A  IF+ +EKFAGYGFNKSH+ AYAL+SY 
Sbjct: 716  AMGKKKPEEMAKQRAIFLEGCANQGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQ 775

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            TA+LK HY + FMAA LS  M +T+K+ I +++  +  GL++  PN+N S  Y F + ++
Sbjct: 776  TAWLKQHYPAAFMAAVLSSDMQNTDKVVIFIEEC-RQMGLTVRLPNVNDSD-YMFTVNDA 833

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLIN 883
            D    ++ YGLGA+KG G+  + AI+  RK G  F +LFDF +R+    +N+R++ +L+ 
Sbjct: 834  D----EVVYGLGAVKGVGEGPVGAIMAARKEGGPFKDLFDFCERVGAGRLNKRVLEALVR 889

Query: 884  SGAFDCFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKNDDNNNLKE-YLNYVKVPS 940
             GA D     R +L  +I  ALK A+++ +  +   + +F   +  +  + Y  + K   
Sbjct: 890  CGALDSLGPSRAVLWEAIASALKAADQSARNADAGMMDMFGEVEAESPGDPYAEFGKARD 949

Query: 941  WSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT--VSGIITELKL 998
            W+ K+ L  EK  LG  ++ H    YE+E+++ +   L EL+P    T  ++G++ +++L
Sbjct: 950  WTDKERLQGEKDTLGLYVTGHPIDEYESELKRLVSRKLVELQPNRGATQKMAGLVVDMRL 1009

Query: 999  KTTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057
            K T +G  L  + +DD S  +E+ +   +++  ++++ ++ +L+V G+V +D +   +++
Sbjct: 1010 KKTKKGDTLCFLTLDDRSARMEITLFGDVFDAARSLINKDAVLVVEGEVAQDDYNGGLKV 1069

Query: 1058 NAEKIFDINVARILYGKKFSVMFNRT-FNISILKKILLRFKCKNG----LPFVLYYCINK 1112
             A K+  +   R    +   ++ +R       +K++    K        LP  L Y   +
Sbjct: 1070 RASKVMSMAQVRTGAARCVEILCDRNQLGRQQMKQLGDTLKAHRSVLLKLPVALNYQ-RE 1128

Query: 1113 SIKYEMKFPLNYKVQPIDDLKLAL 1136
                 +    ++ V+P DDL L L
Sbjct: 1129 DAAARLWLDESWAVEPGDDLLLQL 1152


>gi|407682826|ref|YP_006798000.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'English
            Channel 673']
 gi|407244437|gb|AFT73623.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'English
            Channel 673']
          Length = 1154

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1086 (45%), Positives = 697/1086 (64%), Gaps = 32/1086 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   FIHLR+HS++S++DGL ++  ++   A    PA+AITD  N+ G++KFY  A+N G
Sbjct: 1    MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D W+TNE+   +P RL L+  NN GY  +  L+SKAY+      RA I  EWL
Sbjct: 61   IKPIIGTDFWVTNEVFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLSHRAVIDQEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  + +G+IALSGA  GD+G+ +      I ++    +   FPD FY+E+ R  +    
Sbjct: 121  AE--HSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLELIRTGRQGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A    LP+VAT+ + F+ +  F AHE+R CI +G  L + +R K+++ +Q 
Sbjct: 179  DYLHLAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDNRRPKRYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM++LF DIP AI+NT+EIAKRCN+ +   +  LP+FPT   +   DFL+  S+ 
Sbjct: 239  LRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPT-GGMTTEDFLVKVSEE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ D E+ K ++  Y  RL+ E+E I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG+ AVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL  A K
Sbjct: 418  AELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFK 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQL E  +++EEV+ LI++A+ +EG+ RN G HAGGV+IAP+ + +F PLY  +    
Sbjct: 476  AEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGKN 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             ++Q+DK+D+E  GL+KFDFLGL TL+I+   I  IK+   K  +  ++ +PL D  ++ 
Sbjct: 536  PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKE--GKNVDVDISAIPLEDPKSFR 593

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 594  TLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 653

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  
Sbjct: 654  EEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPE 713

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 714  EMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHY 773

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  G+ ILPP++N  KY F   ++S+G   +I 
Sbjct: 774  PAEFMAAVMSADMDNTDKIVTLV-DECERMGIEILPPDLNAGKYKF--TVDSEG---RIV 827

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R+  G F +LFDF  +ID K +N+R++  L+ +GA D   
Sbjct: 828  YGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMDNLG 887

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+AS+  AL  A +  K     Q  +F     +  ++K+   +  VP W +K  L
Sbjct: 888  PHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQ--AFADVPEWPEKVWL 945

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              EK  LG  L+ H    Y  E+R +    L +LKPT      +  G++  +++ T  RG
Sbjct: 946  EGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMTNKRG 1005

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +  I+ +DD S  ++V     +YE+ +++L+ + +L++ G+V  D F     I A  + 
Sbjct: 1006 RRWAIVTLDDKSARIDVRFFPDMYEQFESVLETDRILLIKGQVSFDDFSGGNTITARDVM 1065

Query: 1064 DINVAR 1069
            DI  AR
Sbjct: 1066 DIVQAR 1071


>gi|339486128|ref|YP_004700656.1| DNA polymerase III subunit alpha [Pseudomonas putida S16]
 gi|431801173|ref|YP_007228076.1| DNA polymerase III subunit alpha [Pseudomonas putida HB3267]
 gi|338836971|gb|AEJ11776.1| DNA polymerase III, alpha subunit [Pseudomonas putida S16]
 gi|430791938|gb|AGA72133.1| DNA polymerase III subunit alpha [Pseudomonas putida HB3267]
          Length = 1174

 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1182 (42%), Positives = 735/1182 (62%), Gaps = 51/1182 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A A    PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+  L  N  GY  L EL+S+ + E    G   ++ EW+    
Sbjct: 65   CGADLWLAAADPEAPLSRICFLAMNPKGYRNLTELISRGWTEGQRNGLVILQREWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR D AE   + W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMAMFPERFYVEVQRTNRARDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A     P+VAT+ ++F+K+++F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADRFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRMYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  GL++
Sbjct: 243  EEMTELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDVNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  Y-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                YP P       K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHPDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTH+
Sbjct: 721  EMAKQRGGFIEGCANNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHH 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   + +DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNNDG---RIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +RID K +N+R +++LI SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLKEYL 933
              F+++           R  L++++  A+K AE+     +   + LF    +  +   Y 
Sbjct: 895  PHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMFEEADADVYA 954

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP+    T++G+
Sbjct: 955  NHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRDTQTIAGM 1014

Query: 993  ITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            I  L++    +G K+  + +DD S  +E  +    +   +++L+ + +++V G+V  D F
Sbjct: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDF 1074

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLY 1107
               +R+  +++  +  AR    +   +       +   +  L +++ R   +   P  L 
Sbjct: 1075 SGGLRLRVKQVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRH--RGACPITLE 1132

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1133 YT-GSDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173


>gi|269101954|ref|ZP_06154651.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp.
            damselae CIP 102761]
 gi|268161852|gb|EEZ40348.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp.
            damselae CIP 102761]
          Length = 1159

 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1152 (42%), Positives = 732/1152 (63%), Gaps = 36/1152 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S+IDGL ++  +I+ A+    PALAITD +NL G++KFY +A++ GIK
Sbjct: 4    PRFIHLRVHSDFSMIDGLAKVKPIIKKASELQMPALAITDFTNLCGLVKFYYAAHDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    +   L +L  NN GY  L  L+S+AY       +  I  EWL K
Sbjct: 64   PIIGADFKVQSEELGDELFDLTILAANNEGYKNLTLLISEAYQRGHVQHQPVIDKEWLIK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  DGLI LSG   GD+G A+  G  ++ E     +   F D++Y+E+ R  +P+    
Sbjct: 124  HK--DGLILLSGGKTGDVGKALLKGNQNMVEQCVAFYQTYFSDSYYLELVRTGRPDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A    LP+VAT+ ++ L   +F AHE+R  I +G  L++  R K ++ +Q  +
Sbjct: 182  LHFAIELAEKAQLPVVATNDVRLLSADQFEAHEIRVAIHDGYTLADPNRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT   ++  DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-GELSTEDFLVVKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP+I    +  Y +RL+ E+E I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPDIRAERRPEYDERLEVELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD+VI +V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P +PG  +TL+ A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEPG--MTLAKAFDAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +   ++EEV+ LI++ + +EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQQSYDSDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPLYCDAEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTKTTN-FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  +  +  ++  +P+ D+ ++ 
Sbjct: 539  TQFDKNDVESAGLVKFDFLGLRTLTIIDWALGMINPRLEAQGEDPVNIAAIPMADQKSFT 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      KD+L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDEKWQHESLKDILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRAVFEAGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D      L +LPP++N   Y F   ++  G    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIIGLV-DECHRMKLKLLPPDVNKGLYRFN--VDDQG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  IE I+  R+  G F +LFDF  RID K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIENIIAAREAGGHFKDLFDFCARIDTKKVNKRVLERLIKSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F        +    Y  +P W  K  L  
Sbjct: 893  PNRASMMASLDDAIRAASQHHQAEAFGQTDMFGVLTEAPEEVEHKYANIPEWPDKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y +E++ +    L + +PT    + TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPINSYLSELKHYTTWRLKDAQPTRRDGAATVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  E+  ++++ + +++V+G+V  D +   +R++A ++ DI
Sbjct: 1013 IGLLTLDDRSGRMEVMLFSEALERYLDLIETDRIVVVTGQVSFDDYNGGLRMSAREVLDI 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFK-----CKNGLPFVLYYCINKSIKYEMKF 1120
            + AR  + +  ++         I  K   RF       K G   V  Y    + + ++  
Sbjct: 1073 SDAREKHLRGLAISVTEQ---QIDDKFFARFSEILEPHKAGTVPVNVYYQRSNARAKLTL 1129

Query: 1121 PLNYKVQPIDDL 1132
               +++ P D L
Sbjct: 1130 GTEWRITPADQL 1141


>gi|290473672|ref|YP_003466544.1| DNA polymerase III subunit alpha [Xenorhabdus bovienii SS-2004]
 gi|289172977|emb|CBJ79748.1| DNA polymerase III, alpha subunit [Xenorhabdus bovienii SS-2004]
          Length = 1144

 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1137 (43%), Positives = 734/1137 (64%), Gaps = 39/1137 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +I+  A    PA AITD +NL G++KFY SA++ GIKPIIG D ++ +++
Sbjct: 1    MIDGLAKTGSLIKKVAKLDMPAFAITDFTNLCGLVKFYGSAHSAGIKPIIGADFYVESDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L +NN GY  L  L+S+AY +        I+ EWL   KY+ GLI LSG 
Sbjct: 61   LGDEYAHLTILARNNEGYQNLTFLISEAYQKGYGAIGPTIKQEWL--IKYKAGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   +A+     + + FPD++Y+E+ R  + +    +   + +A+  NL
Sbjct: 119  RMGDVGKFLLRGNRAMADQCLDFYQEHFPDSYYLELIRTGRQDEENYLHAAVEVAAEKNL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + FL+  +F AHE+R  I +G  +++ KR K ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVCFLESDDFEAHEIRVAIHDGYTMADPKRPKNYSPQQYLRSEQEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+QN++EIAKRCN+ +  G+  LP+FPT  +++  D+L+ KSK GL+ RL  LY DP+I
Sbjct: 239  EALQNSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDYLVEKSKQGLEDRLNFLYPDPQI 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
               ++  Y +RL  E+E I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RAEKRSEYDERLDIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITDIDPL+++LLFERFLNP RISMPDFD+DFC E RD+VI +V D YG+DAVSQI+TF
Sbjct: 358  LKITDIDPLAFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F P+Y        ++Q+DK+D+E  GL
Sbjct: 476  RVLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPIYCDPEGLNPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDKDTYNLLKKANTVAV 610
            +KFDFLGL TL+I++   + +  +N + T+       +  +PL+D+ ++++L+++ T AV
Sbjct: 536  VKFDFLGLRTLTIIN---WALDMVNARRTHKNLEPIDITAIPLDDQISFDMLQRSETTAV 592

Query: 611  FQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPD--- 664
            FQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD   
Sbjct: 593  FQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVEW 652

Query: 665  --PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQ 722
                 K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK+  EM + R  F+
Sbjct: 653  QHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEEMAKQRSVFE 712

Query: 723  NGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLS 782
             GAI  G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++
Sbjct: 713  EGAISQGINGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT 772

Query: 783  LSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTG 842
              MD+T K+  LV +  +  GL +LPP+IN   Y+F    ES+     I YG+GAIKG G
Sbjct: 773  ADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFHVNDESE-----IVYGIGAIKGVG 826

Query: 843  KSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
            +  IEAI+  R K G F  LFD   R+D K +NRR++  LI SGAFD     R  L++S+
Sbjct: 827  EGPIEAILEARQKEGHFKELFDLCARVDTKKLNRRVMEKLIMSGAFDRLGPHRAALMSSL 886

Query: 902  DVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            + ALK A++  K   I Q  +F        +  L+Y   P W ++  L  E++ LG  L+
Sbjct: 887  EDALKAADQHAKAEAIGQTDMFGVLAEKPEQVELSYASTPKWPEQVVLDGERETLGLYLT 946

Query: 960  EHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDN 1014
             H    Y  EI ++   + L ++ PT      TV G++   K+ TT RG +I I  +DD 
Sbjct: 947  GHPITSYLKEIERYTNGLRLKDVSPTPRGQVTTVVGLVLASKILTTKRGNRIGICTLDDR 1006

Query: 1015 SNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGK 1074
            S  +E+++ +   E+ +++L+++++LI +G+V  D F   +++   ++ DI+ AR  + +
Sbjct: 1007 SGRLEIMLFSDALERYQHLLEQDKILIATGQVSFDDFSGGLKMTVRELMDISEAREKFAR 1066

Query: 1075 KFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
              ++ + +R  N  +  ++  +L       +P  LYY      +  ++F   ++V P
Sbjct: 1067 GIAISLSDRQINKQLFNRLRGVLEPHRSGTIPVHLYYQ-RVDARARLRFGATWRVTP 1122


>gi|157376278|ref|YP_001474878.1| DNA polymerase III subunit alpha [Shewanella sediminis HAW-EB3]
 gi|157318652|gb|ABV37750.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 1157

 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1164 (42%), Positives = 734/1164 (63%), Gaps = 47/1164 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DGL ++  +I        PA+A+TD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGLAKVKPIIGKVTELGMPAVALTDQTNLCGLVKFYGACHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D W+     +K    + +L  +N+GYL L  L+S AY+      RA I   WL K
Sbjct: 64   PLIGADFWVKVPGFDKDLCSVTVLAMDNDGYLNLTLLISDAYLRGHIDDRAVIDHGWLAK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  GLI LSG  LGD+G A+  G     ++    +   FPD +Y+E+ R  +P+    
Sbjct: 124  --YSKGLILLSGGRLGDVGRALLKGNQAQVDSLVEFYQTHFPDRYYLELLRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ + F     F AHE+R  I++G  L++ +R KK++ EQ FK
Sbjct: 182  LHMAVELATEKGLPVVATNQVVFNSPDLFEAHEIRVAISDGFTLADPRRPKKYSAEQYFK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  +M +LF DIP AI NT+EIAKRCN+ +  G+  LP FPT  +++I DFL+  S+ GL
Sbjct: 242  SSEQMCELFEDIPEAIDNTVEIAKRCNVTVRLGEYFLPNFPT-GDLSIEDFLVEVSEKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ + +M F GYFLIV +FIQW K+  IP+GP
Sbjct: 301  EERLEFLFPDPEVRAEKRPAYDERLDVELKVVNQMGFPGYFLIVMEFIQWGKDQDIPIGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK++P +PG  +TL+ A + E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV+ LI++ + +EG+ RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQESYDADEEVKDLIDMCRTLEGVTRNAGKHAGGVVISPTTITDFAPIYCDAEGLNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS-----LNKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + ++ IN K          +  +PL+D  
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIID---WALQMINPKLKRLGKDPVRIESIPLDDPA 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERK 655

Query: 656  HG-EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD   +      VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK
Sbjct: 656  HGREAVSYPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            THY + FMAA +S  MD+T+KI ILV D  +  G+ +LPP++N     F   ++ +G   
Sbjct: 776  THYPAEFMAAVMSADMDNTDKIVILV-DECERMGMPLLPPDVNKGLLKFN--VDDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            KI YG+GAIKG G   +E+I++ RK G F +LFDF  R+D K +N+RI+  LI +GA D 
Sbjct: 830  KIVYGIGAIKGVGDGPVESILSARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDN 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQ 945
                R  ++A++  A++ A++  K   I Q  +F   N D  ++K+   +V+   W  K 
Sbjct: 890  LGPHRAAMLATLPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDVKQ--QFVECTPWPDKV 947

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTY 1002
             L  E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T 
Sbjct: 948  WLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATRVMMTK 1007

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG K+ ++ +DD S  +EV++  + +EK  ++L+ + +LI+ G+V  D F    R+ A  
Sbjct: 1008 RGSKMGLVTLDDKSARLEVMLFTEAFEKFNHLLETDRILIIEGEVSFDDFSGGNRMTARN 1067

Query: 1062 IFDINVARILYGKKFSVMFNRTFNISILKKILLRFK-----CKNG-LPFVLYYCINKSIK 1115
            I D+  AR  + K   V  +     +I    L  FK      KNG +P V+ Y  +++ K
Sbjct: 1068 IIDMGEARSHFAKGVEVDIDAE---AIDLPWLETFKEAVEPWKNGAVPVVVNYAQSQA-K 1123

Query: 1116 YEMKFPLNYKVQPIDDLKLALINL 1139
             + +   +++V P D+L LAL  L
Sbjct: 1124 AQFRLGESWRVNPTDELMLALETL 1147


>gi|227357235|ref|ZP_03841592.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906]
 gi|227162498|gb|EEI47487.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906]
          Length = 1144

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1148 (43%), Positives = 735/1148 (64%), Gaps = 37/1148 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++  A+   PA AITD +NL G++KFY +A+  GIKPI+G DV++  E+
Sbjct: 1    MIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIVGADVYLETEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L ++N GY  L  L+S+AY          I+ EWL    Y++GL+ LSG 
Sbjct: 61   LGDEYAHLTILARDNVGYQNLTLLISEAYKHGYGAAGPVIKQEWL--TTYKEGLLLLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD++Y+E+ R  +P+    + + + +AS   L
Sbjct: 119  RMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIRTGRPDEESYLHEAVALASEKGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL   +F AHE+R  I +G  LS+ KR K ++ +Q  +T+ EM +LF DIP
Sbjct: 179  PVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPKHYSPQQYMRTEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++N++EIAKRCN+ +  G+  LP+FPT  +++  DFLI KSK GL++RL  L+ DP+ 
Sbjct: 239  EALENSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLIKKSKEGLEERLAFLFPDPQE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             +  +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAYS
Sbjct: 298  REKRRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYS 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        ++Q+DK+D+E  GL
Sbjct: 476  KSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNNPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I     K +     ++ + L D+ ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINARRAKKSLEPVDISAISLTDQRSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKD- 669
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD + +  
Sbjct: 596  ESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGVEEISYPDVKWQHE 655

Query: 670  ----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
                VL  TYG+++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEAGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
            IK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  IKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAIV  R + G F ++FD   R + K +NRR++  LI SGAFD     R  L++S++ A
Sbjct: 830  IEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSGAFDKLGPHRAALMSSLEDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y  VP W  +  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQSDMFGVLAEAPEQVERSYANVPKWPDQVVLEGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIP-IYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI ++     L +L PT       V+G++   K+ TT RG +I I  +DD S  
Sbjct: 950  ITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLASKVFTTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +E+++ +   +K +++L+++ +LI +G+V  D F   +++   ++ DIN AR  Y +  +
Sbjct: 1010 LEIMLFSDALDKYQHLLEQDRILIATGQVSFDDFNGGLKMTVRELMDINEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPID---- 1130
            + + +R  N  +L ++  +L       +P  LY+  + +    ++F   ++V P D    
Sbjct: 1070 ISLSDRQINEQLLNRLRGVLEPHRSGTIPVHLYFQKHDACA-RLRFGATWRVTPTDMLLT 1128

Query: 1131 DLKLALIN 1138
            DL+  L N
Sbjct: 1129 DLRTLLGN 1136


>gi|407699181|ref|YP_006823968.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Black
            Sea 11']
 gi|407248328|gb|AFT77513.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Black
            Sea 11']
          Length = 1154

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1086 (45%), Positives = 697/1086 (64%), Gaps = 32/1086 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   FIHLR+HS++S++DGL ++  ++   A    PA+AITD  N+ G++KFY  A+N G
Sbjct: 1    MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D W+TNE+   +P RL L+  NN GY  +  L+SKAY+      RA I  EWL
Sbjct: 61   IKPIIGTDFWVTNEVFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLAHRAVIDQEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  + +G+I LSGA  GD+G+ +      I ++    +   FPD FY+E+ R  +    
Sbjct: 121  AE--HSEGVIVLSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLELIRTGRQGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A   +LP+VAT+ + F+ +  F AHE+R CI +G  L + +R K+++ +Q 
Sbjct: 179  DYLHLAVELAEQRDLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDNRRPKRYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM++LF DIP AI+NT+EIAKRCN+ +   +  LP+FPT   +   DFL+  S+ 
Sbjct: 239  LRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPT-GGMTTEDFLVKVSEE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ D E+ K ++  Y  RL+ E+E I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG+ AVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL  A K
Sbjct: 418  AELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFK 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQL E  +++EEV+ LI++A+ +EG+ RN G HAGGV+IAP+ + +F PLY  +    
Sbjct: 476  AEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGKN 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             ++Q+DK+D+E  GL+KFDFLGL TL+I+   I  IK+   K  +  ++ +PL D  ++ 
Sbjct: 536  PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKE--GKNVDVDISAIPLEDPKSFR 593

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 594  TLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 653

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  
Sbjct: 654  EEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPE 713

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 714  EMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHY 773

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  G+ ILPP++N  KY F   ++S+G   +I 
Sbjct: 774  PAEFMAAVMSADMDNTDKIVTLV-DECERMGIEILPPDLNAGKYKF--TVDSEG---RIV 827

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R+  G F +LFDF  +ID K +N+R++  L+ +GA D   
Sbjct: 828  YGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMDNLG 887

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  L+AS+  AL  A +  K     Q  +F     +  ++K+   +  VP W +K  L
Sbjct: 888  PHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQ--AFADVPEWPEKVWL 945

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              EK  LG  L+ H    Y  E+R +    L +LKPT      +  G++  +++ T  RG
Sbjct: 946  EGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMTNKRG 1005

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +  I+ +DD S  ++V     +YE+ +++L+ + +L++ G+V  D F     I A  + 
Sbjct: 1006 RRWAIVTLDDKSARIDVRFFPDMYEQFESVLETDRILLIKGQVSFDDFSGGNTITARDVM 1065

Query: 1064 DINVAR 1069
            DI  AR
Sbjct: 1066 DIVQAR 1071


>gi|170723228|ref|YP_001750916.1| DNA polymerase III subunit alpha [Pseudomonas putida W619]
 gi|169761231|gb|ACA74547.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619]
          Length = 1174

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1185 (41%), Positives = 739/1185 (62%), Gaps = 57/1185 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A A    PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCALVKFYKAAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+  L  N  GY  L EL+S+ + +    G   ++ EW+    
Sbjct: 65   CGADLWLAGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVILQREWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR   AE     W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALMAGRTTEAEALLHDWMGMFPERFYVEVQRTNRVGDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +  P+VAT+ ++F+K+++F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADKVGAPLVATNDVRFIKQSDFDAHESRVCIGEGWTLDDPRRPRMYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   S  GL++
Sbjct: 243  DEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI YV D
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAD 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPDVNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +L+++ +++  L +  P++N S++ F   +  DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLIEE-VRSMKLRLDAPDVNASEFKF--TVNDDG---RII 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +R+D K +N+R +++LI SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARDQGGPFKDLFDFCERVDLKRVNKRTLDALIRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNNNLK 930
              F+++           R  L+++++ A+K AE+T +  +         LF  +D++   
Sbjct: 895  PHFHDEIKAYHASIDINRATLLSALEEAIKAAEQTARTADSGHVDLFGGLFVEEDSDV-- 952

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ KV   + K+ L  EK  LG  L+ H    YE EIR+F    + +LKP+    T+
Sbjct: 953  -YANHRKVRELTLKERLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDLKPSRETQTI 1011

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  +++    +G K+  + +DD S  +E  +    +   + +L+ + +++V G+V  
Sbjct: 1012 AGMIIAMRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMGAQALLQNDAMVVVEGEVSN 1071

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPF 1104
            D F   +R+  +++  +  AR    +   +       +   ++ L +++ R   + G P 
Sbjct: 1072 DDFSGGLRLRVKQVMTMEDARTKLAESLRLKITHDALKGDRLNWLGELITRH--RGGCPI 1129

Query: 1105 VLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             L Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1130 TLEYT-GSDAKAMLQFGDQWSIDPADGLIQALRDQFGRENVFLQY 1173


>gi|163750366|ref|ZP_02157606.1| DNA polymerase III subunit alpha [Shewanella benthica KT99]
 gi|161329856|gb|EDQ00842.1| DNA polymerase III subunit alpha [Shewanella benthica KT99]
          Length = 1157

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1160 (42%), Positives = 734/1160 (63%), Gaps = 39/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HS++S+ DGL ++  ++        PA+A+TD +NL G++KFY + ++ G+K
Sbjct: 4    PSFVHLRVHSDFSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+     +K+   + +L   N GY  L  L+S AY+      +A I   WL K
Sbjct: 64   PIIGADFWMQVPGFDKEFCAITVLAMTNEGYSNLTLLISDAYLRGHIKDKAVIDQGWLAK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  GL+ LSG   GD+G A+ NG +    +    +   FPD +Y+E+ R  +P+    
Sbjct: 124  --YSKGLLLLSGGRQGDVGRALLNGNHGQVASLIEFYRTHFPDRYYLELLRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + F     F AHE+R  I++G  L++ +R KK++++Q FK
Sbjct: 182  LHLAVALAQEKDLPVVATNQVVFNGPEFFEAHEIRVAISDGFTLADPRRPKKYSEQQYFK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T  EM +LF DIP AI NT+EIAKRCN+ +  G+  LP FPT  +++I DFL+  SK GL
Sbjct: 242  TSEEMCELFQDIPEAIANTVEIAKRCNVTVRLGEYFLPNFPT-GDLSIEDFLVKVSKDGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ DPE+   ++ RY +RL  E++ I +M F GYFLIV +FIQW K+ +IP+GP
Sbjct: 301  EDRLEFLFPDPEVRAQKRPRYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDQNIPIGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL+ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK++P +PG  +TL+ A + E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV+ LI++ + +EG+ RN G HAGGV+I+P+K+ +F P+Y        +
Sbjct: 479  PALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKITDFAPIYCDSEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  K+         +  +PL+DK  + 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKELGKEPVRIESIPLDDKKCFK 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  ++PD   +      VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKKK  
Sbjct: 659  EVVSFPDAEYQHESLRWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI ILV D  +  G  +LPP++N     F   ++ +G   KI 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVILV-DECERMGQPLLPPDVNKGLLKF--TVDEEG---KIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G   +E+I+  RK G F +LFDF  R+D K +N+RI+  LI +GA D    
Sbjct: 833  YGIGAIKGVGDGPVESILAARKNGPFKDLFDFCARVDLKKLNKRIMEKLIFAGALDSLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N D  ++K+   +V+   W  K  L 
Sbjct: 893  HRAAMMATLPEAVRAADQNAKAEAIGQHDMFGLLNSDVEDIKQ--QFVQCTPWPDKVWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E+  LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI+ G+V  D F    R+ A  I D
Sbjct: 1011 KMGLVTLDDKSARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
            +  AR  +     +     + + T+ +   K+++  ++ K  +P ++ Y   ++ K + K
Sbjct: 1071 MGEARNHFASALEIDIDSDLIDETW-LDSFKQVVEPWR-KGAVPIIINYAQPQA-KAQFK 1127

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
               N++V P D+L LAL  L
Sbjct: 1128 LGDNWRVNPTDELMLALETL 1147


>gi|386834920|ref|YP_006240237.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. 3480]
 gi|385201623|gb|AFI46478.1| DNA polymerase III alpha subunit [Pasteurella multocida subsp.
            multocida str. 3480]
          Length = 1159

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1158 (42%), Positives = 734/1158 (63%), Gaps = 49/1158 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+I+G+ ++  +I+A  +++  A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PIIG DV + +E+   +P  L LL KNN GY  +  LLSKAY    +++ Y    +   W
Sbjct: 64   PIIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQDLPY----LDQAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++  +G+I LSG H GD+G  +  G     E+    +   FPD+FY+ + R  +   
Sbjct: 120  LAEHR--EGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSLSRTGRYEE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A    LP+VAT+ + FL + +F AHE+R  I +   L + KR K +T +Q
Sbjct: 178  ERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKRPKLYTNQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  DFL+ KSK
Sbjct: 238  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDFLVKKSK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++ +  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct: 417  VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P  + +F PLY      
Sbjct: 475  AAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
              ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  INT+          +  +PL+
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINTRLAKEGKPPVDIATIPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  ++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF 
Sbjct: 592  DPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFI 651

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E   YPDP       K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+
Sbjct: 652  DRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAM 711

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   R+ F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 712  GKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 771

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTHY + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S  
Sbjct: 772  WLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRM-GLKVAPPDINTGKHHF-----SVN 825

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            +H +I YG+GAIKG G+  IEA+++ R + G F +LFD   R+D K INRR   SLI SG
Sbjct: 826  EHGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSG 885

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L  +++ ALK +++  K   + Q  +F     ++      Y   PSWS+
Sbjct: 886  AFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPSWSE 945

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
            K  L  E++ LG  LS H    Y  E+  +    L +L P       TVSG++   +   
Sbjct: 946  KVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAV 1005

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T +G ++ I  +DD S  +++ +  +  +K  + L+++ ++IVSG+V  D F   ++++ 
Sbjct: 1006 TKKGNRLGIATLDDRSGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSV 1065

Query: 1060 EKIFDINVARILYGKKFSVMFNR-----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
             ++  ++ AR  Y K  ++  +      TF I  LK +L  +     LP  +YY  + + 
Sbjct: 1066 RELMSLDEARSRYAKSLAICLSEENMKPTF-IRELKALLTPYSGGT-LPIYVYYA-STAG 1122

Query: 1115 KYEMKFPLNYKVQPIDDL 1132
            +  +K  + + V P D L
Sbjct: 1123 QCRVKMGVQWSVNPTDQL 1140


>gi|406979141|gb|EKE00991.1| hypothetical protein ACD_21C00250G0064 [uncultured bacterium]
          Length = 1154

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1153 (42%), Positives = 729/1153 (63%), Gaps = 30/1153 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +FIHL LH+EYSI DG++RI  ++ A  +   PA+A TD SNLF ++KFYK+A   G
Sbjct: 1    MATKFIHLNLHTEYSISDGIVRIEQLMAACGDKNMPAIAFTDQSNLFALVKFYKAAVASG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+W+ N  + + P ++LLL +N  GY  + +L+S ++++  + G   I+  WL
Sbjct: 61   IKPIIGVDIWLENTKDERNPFKVLLLAQNQKGYQNILKLVSLSFVQGQHLGVPIIKRSWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    DGLI LSG   GD+G ++       A+   + W K+FP  +Y+E+QR  +   +
Sbjct: 121  QE--LADGLIVLSGGKDGDVGQSLLADDLVQAQQLLKFWLKVFPGCYYVELQRTGRARED 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +Q+ +++A  +  P+VAT+ ++F+ K EF AHE R CI  G +L +  R + ++ +Q 
Sbjct: 179  EYLQKALDLAEQLQCPVVATNVVRFVSKQEFEAHEARVCINSGYVLDDPNRPRLYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM +LF DIP ++ N++EIAKRCN++L  GK  LP FP P  +    +   ++  
Sbjct: 239  LRSPEEMEELFSDIPESLINSVEIAKRCNVELVLGKTFLPIFPVPPKLTPEIYFAEEAHI 298

Query: 301  GLKKRLLNLY--KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GLKKR   ++    P+  K  +  Y +RL++EI+ I KM F+ YFLIV+DFI WAK N +
Sbjct: 299  GLKKRFQKIFDVTSPDFAKKSE-EYARRLEYEIDVINKMGFASYFLIVADFICWAKQNGV 357

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITDIDP+ Y LLFERFLNP R+S+PDFD+DFC +GRDRVI+
Sbjct: 358  PVGPGRGSGAGSLVAYALDITDIDPIKYELLFERFLNPERVSLPDFDVDFCMDGRDRVIE 417

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV  RYGKD V+QI+T+GTMAA+  +RDVGRVL   Y + D I+KLIPF+ G  I+L  A
Sbjct: 418  YVVGRYGKDKVAQIITYGTMAARAVVRDVGRVLGYPYGYVDKIAKLIPFEIG--ISLERA 475

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            ++EE  L ++   EE+ + LI+LA ++EGI RN G HAGGV+IAPS L +F PLY +   
Sbjct: 476  LQEEELLQQKYNQEEDTKTLIDLAMKLEGITRNAGKHAGGVVIAPSALTDFMPLYCEAAG 535

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKI--NTKTTNFSLNKLPLNDK 596
             G+++Q+DKDD+E +GL+KFDFLGL TL+I++  +  I  +  +   +   +N +PL+DK
Sbjct: 536  EGVVTQFDKDDVETVGLVKFDFLGLRTLTIINLALQNINAVRKHQGESPIDINLIPLDDK 595

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+  NT AVFQ ES+  ++++K  KPD F +++AL ++ RPG +   ++  F  R
Sbjct: 596  ATYKLLRDCNTTAVFQFESRMSRDIIKRFKPDCFTDVVALGAIIRPGVLQSGMLDEFVDR 655

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            K+G     Y  P+ + +L  TYG++VYQEQVMQ+AQ L GYSLG ADLLRRA+GKKK  E
Sbjct: 656  KNGRSRITYLHPKLEPILRPTYGVVVYQEQVMQMAQSLAGYSLGAADLLRRAMGKKKPEE 715

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M   R  F +GA K  + KH AN IF+ +EKFAGYGFNKSH+TAYAL+SY TA+LK HY 
Sbjct: 716  MALQRAVFIDGAAKNNIDKHLANTIFDLMEKFAGYGFNKSHSTAYALISYQTAWLKAHYP 775

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA LS  MD+T+K+   + D  K   L+I+PP+IN S Y F   + + G   +I Y
Sbjct: 776  AEFMAAVLSSDMDNTDKVVFFLNDC-KKSNLTIIPPDINSSNYQF--TVNASG---EILY 829

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGA+KG G++ ++ I+  R + G F +LFD  KR+D + +N+R++ +LI +GA D    
Sbjct: 830  GLGAVKGVGQAAVDIILAARSEQGSFRDLFDLCKRVDARKVNKRVLEALIYAGALDKIGP 889

Query: 893  KRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             R   +A++ +A++ AE+  K     Q+ LF           L+Y+ V  W+K++ L  E
Sbjct: 890  GRASQIATLGIAMRAAEQHGKHSASGQIDLFGELSPEENSNTLDYIAVAEWTKEERLQHE 949

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY--SCTVSGIITELKLKTTYRG-KIL 1007
            K +LGF L+ H    + +E+ +FI   +SEL P    +  ++G I  LK+  T  G ++ 
Sbjct: 950  KDILGFYLNGHPIEQFVSELDEFISASISELVPETGRAVLIAGFIKNLKIVNTKSGNRLA 1009

Query: 1008 IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
            II ++D + S++V +  + +   +  L E +L+IV G+V  D F    RI A K  +++ 
Sbjct: 1010 IITLEDMTASIDVTMYAENFASARECLVEGQLVIVEGEVGVDSFSDGYRIRATKAMNLDQ 1069

Query: 1068 ARILYGK----KFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLN 1123
            AR +Y +    K +        + +L  IL  +       FV Y   N  +  ++     
Sbjct: 1070 ARSIYVRGIVLKLTAEQISDEALHVLYGILSGYHGGKCPVFVAYN--NGEVAAKLALGDK 1127

Query: 1124 YKVQPIDDLKLAL 1136
            +KV P ++L + L
Sbjct: 1128 WKVYPKEELLVKL 1140


>gi|294140019|ref|YP_003555997.1| DNA polymerase III subunit alpha [Shewanella violacea DSS12]
 gi|293326488|dbj|BAJ01219.1| DNA polymerase III, alpha subunit [Shewanella violacea DSS12]
          Length = 1157

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1160 (42%), Positives = 730/1160 (62%), Gaps = 39/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HS+YS+ DGL ++  ++        PA+A+TD +NL G++KFY + +  G+K
Sbjct: 4    PSFVHLRVHSDYSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+     +K    + ++  +N+GYL L  L+S AY+      RA I  EWL  
Sbjct: 64   PIIGADFWVRVPGFDKDLCSVTVIAMDNDGYLNLTLLISDAYLRGHINDRAVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             KY +GL+ LSG   GD+G A+  G     ++    +   FPD +Y+E+ R  +P+    
Sbjct: 122  IKYSNGLLLLSGGRHGDVGRALLKGNKPQVDSLVEFYQTHFPDRYYLELLRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F     F AHE+R  I++G  L++ +R KK++ +Q FK
Sbjct: 182  LHLAVELAQEKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRRPKKYSDQQYFK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM  LF DIP AI NT+EIAKRC++ +  G+  LP FPT   ++I DFL+  S+ GL
Sbjct: 242  SSEEMCALFEDIPEAIANTVEIAKRCSVTVRLGEYFLPNFPT-GELSIEDFLVKVSEDGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+  IP+GP
Sbjct: 301  ENRLEFLFPDPEVRAQKRPAYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDQDIPIGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK++P +PG  +TL+ A + E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV+ LI++ + +EG+ RN G HAGGV+I+P+K+ +F P+Y        +
Sbjct: 479  PALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKITDFAPIYCDSEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  K+         +  +PL+DK ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKALGKEPVRIESIPLDDKKSFK 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  ++PD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKKK  
Sbjct: 659  EEVSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI ILV D  +  G  +LPP++N     F   ++ +G   KI 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVILV-DECERMGQPLLPPDVNKGLLKFN--VDEEG---KIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G   +E+I+  RK G F +LFDF  R+D K +N+RI+  LI +GA D    
Sbjct: 833  YGIGAIKGVGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDSLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N D  ++K+   +V+   W  K  L 
Sbjct: 893  HRAAMMATLPAAVRAADQNAKAEAIGQHDMFGLLNSDTEDIKQ--QFVQCTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI+ G+V  D F    R+ A  I D
Sbjct: 1011 KMGLVTLDDKSARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
            +  AR  +     V       + T+ +   K+++  +K K  +P ++ Y   ++ K ++K
Sbjct: 1071 MGEARNHFASALEVDIDSDSIDETW-LDSFKQVVEPWK-KGSVPIIVNYAQPQA-KAQLK 1127

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
               N++V P D+L LAL  L
Sbjct: 1128 LGDNWRVNPTDELMLALETL 1147


>gi|88812392|ref|ZP_01127642.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231]
 gi|88790399|gb|EAR21516.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231]
          Length = 1174

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1169 (42%), Positives = 720/1169 (61%), Gaps = 57/1169 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F HL LHSE+S+ DGL+R+  +++A A    PA+A+TD  NLFG +KFY++A N G+KPI
Sbjct: 5    FAHLHLHSEFSLQDGLIRVKPLMQAVAQAGMPAVALTDQGNLFGAVKFYRAAVNAGVKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG ++ + +   +++P+RL+LL  +  GY  L  LL++ Y+E    G   +  EWL    
Sbjct: 65   IGAEIRVADADASERPARLVLLCADTQGYRTLTRLLTRGYLEGQQQGVPVVDREWLRGRC 124

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
               GLI LSG  +GD+G A+ +G   +A      W + F D +Y+E+QR  +P     +Q
Sbjct: 125  A--GLIGLSGGRVGDVGRALLSGEPALAARKLEFWREQFGDRYYLELQRTGRPGDEEHVQ 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A+   + +VAT+ + FL+  ++ AHEVR CI +G  L++  R + ++++Q  ++ 
Sbjct: 183  AAVELATAHGVAVVATNDVCFLRPEDYAAHEVRVCIQDGRTLADKHRPRHYSEQQYLRSP 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P A++NT EIA+RCNL L      LP FP P+  +I+D L  +++ GL++
Sbjct: 243  KEMAELFADVPEALENTAEIARRCNLHLTLSHSALPVFPIPEGASIDDVLRQEAERGLQE 302

Query: 305  RL-LNLYKD-PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  +L  D P+  +  +  Y +RL+ E+E I +M F  YFLIV+DFI+WAK   IPVGP
Sbjct: 303  RLQCSLVTDHPDGVELRR-SYSERLERELEVINQMGFPSYFLIVADFIRWAKRQGIPVGP 361

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPLSY+LLFERFLNP R+SMPDFDIDFC E RDRVI YV  
Sbjct: 362  GRGSGAGSLVAYALQITDLDPLSYDLLFERFLNPERVSMPDFDIDFCMENRDRVIDYVGG 421

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYG+D VSQIVT GTMAA+  +RDVGRVL   Y + D I+K+IPF+ G  ITL  A+ +E
Sbjct: 422  RYGRDKVSQIVTHGTMAARAVVRDVGRVLGHPYGYVDRIAKMIPFEIG--ITLEKALAQE 479

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
             +L    + +EEVR L+ +A+++EG+ RNVG HAGGV+IAPS+L +F PLY + G  G+ 
Sbjct: 480  EELHRLYREDEEVRTLLGMARKLEGLARNVGRHAGGVVIAPSELTDFAPLYCEPGGQGLA 539

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT-----NFSLNKLPLNDKD 597
            +QYDKDDIE +GL+KFDFLGL TL+I+D T   +K +NT+ +        +  L L+D  
Sbjct: 540  TQYDKDDIEAVGLVKFDFLGLRTLTIIDWT---VKAVNTQRSACDEPALDIAALALDDAK 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            T+ LLK+  T AVFQLES+GMK++++  +PD FE+IIAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TFELLKRCATTAVFQLESRGMKDLMRRLQPDTFEDIIALVALFRPGPLQSGMVDDFIARK 656

Query: 656  HGE-YFNYP-----DPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG     YP         + +L  TYGI++YQEQVMQIAQ L GYSLG ADLLRRA+GKK
Sbjct: 657  HGRAAVAYPTRALHHEALEPILKSTYGIILYQEQVMQIAQTLAGYSLGAADLLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  GAI+ GL++ +A  +F+ +EKFAGYGFNKSH+ AYALL+Y TA+LK
Sbjct: 717  KPQEMAQQRHIFLQGAIECGLARQQAEGLFDLMEKFAGYGFNKSHSAAYALLAYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA LS  MD+T+K+  L+ D  +   + + PP++N S Y F        +  
Sbjct: 777  AHYPAPFMAAVLSSDMDNTDKVVALI-DECRCLQIILDPPDVNRSGYAF-----QAREMT 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             I YGLGA+KG G S IEA+V  R+ G  + +LFD  +R+D + +N+R+I +LI SG+ D
Sbjct: 831  HIVYGLGAVKGLGLSAIEALVEAREAGGPYADLFDLCRRVDLRRVNKRVIETLIRSGSLD 890

Query: 889  CFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNNNLKEYLNYVK--VPSWSKK 944
                 R      +  AL++AE+    +   Q+ LF        +  L      VP W ++
Sbjct: 891  GLAVNRATAWQQLPDALRSAEQQCRNRDTGQVDLFGLGATPLEQAPLTVSDPGVPEWDEQ 950

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLK-- 999
            + L  EK  LG  L+ H    YE E+   +   L+++        +   G   E + K  
Sbjct: 951  ERLAAEKATLGLYLTGHPIEHYEAELDGIVSARLNQVSAGACGEPARGVGRKREGERKVV 1010

Query: 1000 ------------TTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047
                        T   G++  I +DD +  ++VI+  + Y++ ++ L +++LL+V G + 
Sbjct: 1011 VAGLVVALRARPTQNGGRMGFITLDDRTGRMDVIVFPEAYKRFQHRLVKDQLLVVEGVLG 1070

Query: 1048 EDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFN----ISILKKILLRFKCKNGLP 1103
             D F    R+ AE++ DI  AR  Y +   +           I  L+++L  F+ +   P
Sbjct: 1071 YDEFTDGFRVAAERVLDIGEARETYARCLVLGVTAAQAGDGFIPALREVLEPFR-QGCCP 1129

Query: 1104 FVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
              L Y   +     ++    ++V+P D+L
Sbjct: 1130 VWLEY-QGRGAWVTLRLGSAWRVRPTDEL 1157


>gi|389792823|ref|ZP_10196005.1| DNA polymerase III subunit alpha [Rhodanobacter fulvus Jip2]
 gi|388435687|gb|EIL92584.1| DNA polymerase III subunit alpha [Rhodanobacter fulvus Jip2]
          Length = 1179

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1092 (45%), Positives = 690/1092 (63%), Gaps = 59/1092 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  ++ HL LHSEYS++D  +RI  ++ A   D  PA+A+TD SN+F ++KFYK+    G
Sbjct: 1    MTVRYTHLHLHSEYSLVDSTIRIKALVGACVRDGIPAVALTDDSNMFALVKFYKACSAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI GCD+WI++  ++ +P RL +L +++ GYL L  L+S+A+ +  + GRA +   WL
Sbjct: 61   IKPIGGCDLWISSP-DDPRPWRLTVLCQHHAGYLNLSRLVSRAWRDGQHGGRALVDAGWL 119

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
              +    GLIAL G       IA+  G    A +  +  + +FPD  Y+E+ R  +    
Sbjct: 120  TADATF-GLIALLGRDSEVARIALNQG-TPAARSKLQPLAHLFPDRLYLELTRCGREGEE 177

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
                Q + + +++NLP++A++ ++FLK+ +F AHE R CI +G +L++ KR   ++ +Q 
Sbjct: 178  NWNTQALALGADLNLPVLASNDVRFLKQDDFEAHEARVCINQGRVLADPKRPHDYSDQQY 237

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
              T  EM  LF D+P A++NT+E+AKRCNL+L+FG   LP FP P   ++  ++   S+H
Sbjct: 238  LTTPEEMAALFADLPEALENTVELAKRCNLELKFGTYYLPDFPVPGGHDLASYIRELSRH 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL      P      +  Y +RL+ E++ I++M F GYFLIVSDFI+W K+N IPV
Sbjct: 298  GLEERLALA---PLANNHTRQDYDQRLERELDVIVEMGFPGYFLIVSDFIRWGKDNGIPV 354

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVA++L ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI YV
Sbjct: 355  GPGRGSGAGSLVAWALKITDLDPLQFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYV 414

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI- 479
              +YG+D VSQI+T+G+MAAK  +RD GRVL + Y   D ++KLIP +P  L TLS+A+ 
Sbjct: 415  SRKYGRDRVSQIITYGSMAAKAVLRDSGRVLSMGYGQVDKLAKLIPPRPLDL-TLSDALN 473

Query: 480  -----KEEPQLAER-----IKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
                 K+EP    R      + +E+ R LI+LA ++E + RN G HAGGV+IAP+ L +F
Sbjct: 474  RSEKAKKEPDRVVREFCDIYEQDEDARALIDLALKLENLTRNAGKHAGGVVIAPTPLTDF 533

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN 589
             PLY + G  G+++Q+DKDD+E +GL+KFDFLGL TL+I+D  +  I     KT    L+
Sbjct: 534  APLYCEPGGGGVVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAKTGEEPLD 593

Query: 590  --KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
               LPL+D   Y LLKKA TVAVFQLES GM+ MLK+AKPD FE+IIAL++LYRPGPMDL
Sbjct: 594  IAALPLDDPAPYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGPMDL 653

Query: 648  IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            I +F  RKHG E   YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGY+LG ADLLRRA+
Sbjct: 654  IPSFVARKHGREDVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYTLGGADLLRRAM 713

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F+ GA K GLS  KA+ IF+ +EKFAGYGFNKSHA AYAL+SY TA
Sbjct: 714  GKKKLEEMAKERVKFREGAAKDGLSGDKADAIFDLMEKFAGYGFNKSHAAAYALVSYQTA 773

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA +S  MD+T+K+   + D  +  G+ + PP++N S+Y F        
Sbjct: 774  WLKAHYPAEFMAATISSDMDNTDKVVTFL-DESRVLGIDVRPPDVNASEYMFVAT----- 827

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
            + K I+YGLGAIKG G+   EAIV ER  G +T+L DF +RID   +NRR++ +LI  G+
Sbjct: 828  EAKTIQYGLGAIKGVGQGACEAIVAERANGPYTDLADFCRRIDPTRLNRRVLEALILCGS 887

Query: 887  FDCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNN---LKEYLNYVKVPSW 941
             D     R  L+A +  A+K AE+    K   Q  +F     N    LK  L  V    W
Sbjct: 888  LDALAPTRASLIAQLPNAMKAAEQHLRDKQSGQNDMFGAAMGNATPVLKVELPVVA--EW 945

Query: 942  SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL-------------------- 981
              +Q+L  E+  LG  LS H    ++ E+ Q     L E+                    
Sbjct: 946  PLEQKLQGERDTLGHYLSGHPTDPWKDELAQLSTCPLGEIVDRYQPPKPRRNDDGDSNRF 1005

Query: 982  --KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENEL 1039
               P    T++G++  ++ +         + I+D S S+EV    +LY++   +L  +++
Sbjct: 1006 RRGPDTPWTIAGMVAAVRKRGDSDA---FVRIEDGSGSIEVSFFGELYQQIAPLLTRDQI 1062

Query: 1040 LIVSGKVLEDRF 1051
            LIV G +  D F
Sbjct: 1063 LIVEGGLRIDDF 1074


>gi|386013520|ref|YP_005931797.1| protein DnaE [Pseudomonas putida BIRD-1]
 gi|313500226|gb|ADR61592.1| DnaE [Pseudomonas putida BIRD-1]
          Length = 1174

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1182 (41%), Positives = 738/1182 (62%), Gaps = 51/1182 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A      PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+     +   SR+  L  +  GY  L EL+S+ + +    G   ++ EW+    
Sbjct: 65   CGADLWLAGADPDAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR D AE   + W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   +  GL++
Sbjct: 243  EEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   + +DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNNDG---RIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +RID K +N+R +++L+ SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLKEYL 933
              F+++           R  L++++  A+K AE+     +   + LF +  D  ++  Y 
Sbjct: 895  PHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADIDVYA 954

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP+    T++G+
Sbjct: 955  NHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGM 1014

Query: 993  ITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            I  L++    +G K+  + +DD S  +E  +    +   +++L+ + +++V G+V  D F
Sbjct: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDF 1074

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLY 1107
               +R+  +++  +  AR    +   +       +   +  L +++ R   +   P  L 
Sbjct: 1075 SGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRH--RGACPITLE 1132

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1133 YT-GSDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173


>gi|114048185|ref|YP_738735.1| DNA polymerase III subunit alpha [Shewanella sp. MR-7]
 gi|113889627|gb|ABI43678.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-7]
          Length = 1158

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1158 (42%), Positives = 741/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +NL G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+     + +   L ++  NN+GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGHVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSG   GD+G A+  G N   E+    + + F   +Y+E+ R  +P+    
Sbjct: 122  VTYNEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A++NT+EIAKRCN+ +   +  LP FPT  +++I DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I K+  K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL+I+PP++N   + F   ++ D    +I 
Sbjct: 779  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLTIIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A+  A++  K   I Q  +F   N D  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFNRT-FNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  +     +  + +  N S+L+ I       +NG +P V+ Y   ++ K + +  
Sbjct: 1071 ISEARSHFASALEIDLDASQLNPSVLESIEQSISPWRNGAVPVVINYSQAQA-KGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
             +++V P D+L  AL +L
Sbjct: 1130 EHWRVNPSDELVFALESL 1147


>gi|425064787|ref|ZP_18467907.1| DNA polymerase III alpha subunit [Pasteurella multocida subsp.
            gallicida P1059]
 gi|404384778|gb|EJZ81205.1| DNA polymerase III alpha subunit [Pasteurella multocida subsp.
            gallicida P1059]
          Length = 1159

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1158 (42%), Positives = 734/1158 (63%), Gaps = 49/1158 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+I+G+ ++  +I+A  +++  A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PIIG DV + +E+   +P  L LL KNN GY  +  LLSKAY    +++ Y    +   W
Sbjct: 64   PIIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQDLPY----LDQAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++  +G+I LSG H GD+G  +  G     E+    +   FP++FY+ + R  +   
Sbjct: 120  LAEHR--EGIIVLSGGHNGDVGKKLLKGHATEIESAVAFYQDFFPEHFYLSLSRTGRYEE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A    LP+VAT+ + FL + +F AHE+R  I +   L + KR K++T +Q
Sbjct: 178  ERYVSLALTLAEEKGLPVVATNDVLFLHEEDFEAHEIRVAIHDSYTLDDPKRPKRYTNQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  DFL+ KSK
Sbjct: 238  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDFLVKKSK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++ +  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct: 417  VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P  + +F PLY      
Sbjct: 475  AAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
              ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  INT+          +  +PL+
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINTRLAKEGKPPVDIATIPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  ++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF 
Sbjct: 592  DPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFI 651

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E   YPDP       K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+
Sbjct: 652  DRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAM 711

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   R+ F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 712  GKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 771

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTHY + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S  
Sbjct: 772  WLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVAPPDINTGKHHF-----SVN 825

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            +H +I YG+GAIKG G+  IEA+++ R + G F +LFD   R+D K INRR   SLI SG
Sbjct: 826  EHGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSG 885

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L  +++ ALK +++  K   + Q  +F     ++      Y   P WS+
Sbjct: 886  AFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRWSE 945

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
            K  L  E++ LG  LS H    Y  E+  +    L +L P       TVSG++   +   
Sbjct: 946  KVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAV 1005

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T +G ++ I  +DD S  +++ +  +  +K  + L+++ ++IVSG+V  D F   ++++ 
Sbjct: 1006 TKKGNRLGIATLDDRSGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSV 1065

Query: 1060 EKIFDINVARILYGKKFSVMFNR-----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
             ++  ++ AR  Y K  ++  +      TF I  LK +L  +     LP  +YY  + + 
Sbjct: 1066 RELMSLDEARSRYAKSLAICLSEENMKPTF-IRELKALLTPYSGGT-LPIYVYYA-STAG 1122

Query: 1115 KYEMKFPLNYKVQPIDDL 1132
            +  +K  + + V P D L
Sbjct: 1123 QCRVKMGVQWSVNPTDQL 1140


>gi|292489212|ref|YP_003532099.1| DNA polymerase III subunit alpha [Erwinia amylovora CFBP1430]
 gi|292898554|ref|YP_003537923.1| DNA polymerase III subunit alpha [Erwinia amylovora ATCC 49946]
 gi|428786173|ref|ZP_19003655.1| DNA polymerase III alpha subunit [Erwinia amylovora ACW56400]
 gi|291198402|emb|CBJ45509.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC 49946]
 gi|291554646|emb|CBA22332.1| DNA polymerase III alpha subunit [Erwinia amylovora CFBP1430]
 gi|426275301|gb|EKV53037.1| DNA polymerase III alpha subunit [Erwinia amylovora ACW56400]
          Length = 1160

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1151 (42%), Positives = 738/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL + + +++ AA+   PA+ ITD +NL G++KFY +A+ +G+K
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSPLVKYAASIGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +++E    + +++ +L  +N GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNVSSEAMGDELTQITVLAADNEGYQNLTLLISRAYQRGYGPAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q GLI LSG   GD+G  +  G +         + + FPD +Y+E+ R  +P+    
Sbjct: 122  AEHQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYLELIRTGRPDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FL +++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIA+RCN+ +  G+  LP+FPT   +   DFL+ +SK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPT-GEMTTEDFLVVESKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDENGDHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  K+  +      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM   R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++  GL +LPP+IN   Y F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECLR-MGLKVLPPDINSGLYQFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++++  ALK A++  K   I Q+ +F        +   +Y  V  W ++ +L  
Sbjct: 893  PHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPEQIQLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A  + D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKFQHMLEKDRILIVSGQVSFDDFNGGLKMMARDMMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +  ++G +P  LYY   +  + +++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQ-REDARAKLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|262276512|ref|ZP_06054321.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886]
 gi|262220320|gb|EEY71636.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886]
          Length = 1159

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1159 (43%), Positives = 739/1159 (63%), Gaps = 38/1159 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A + G+K
Sbjct: 4    PRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +  +       ++ +L  NN GY  L  L+SKAY+      +  I I+WL +
Sbjct: 64   PIIGADFKMQTDTFGDDLCQITVLAANNAGYKNLTLLISKAYLRGHIQHQPVIDIQWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  DGLI LSG   GD+G A+  G   +A   A  + + FPD +YIE+ R  + +    
Sbjct: 124  LK--DGLIILSGGKNGDVGKALLKGNMALAAQCAAFYQQHFPDAYYIELIRTGRADEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +  A    LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVEFAEEQGLPVVATNEVCFLTPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ NT+EIAKRCN+ +   +  LP FPT + + I +FLI KSK GL
Sbjct: 242  SEEEMCELFQDIPEALANTVEIAKRCNVTVRLNEYFLPNFPT-EGMEIGEFLIKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDPEVRAEKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNNIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDKRDKVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQLAE  + +EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLAELYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTITDFAPLYCDSEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       ++ + ++D+ ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALSMINPRLEKMGQAPVRIDAIKMDDQASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ A T AVFQLES+GMK ++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNAETTAVFQLESRGMKELIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 659  EAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRATFEQGAIKNGVDGELAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV++  +   L+ILPP++N   Y F     +  +  +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVGLVEEC-RRMKLTILPPDVNAGLYRF-----NVNEKGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G++ IE I+  R + G+F +LFDF  RID K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEAPIENIIKAREEGGYFRDLFDFCARIDTKKVNKRVIEKLIQSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D ALK+A +    +   Q  +F        +    Y KVP W  K  L  
Sbjct: 893  PHRAAMMASLDDALKSASQHHQAEAFGQTDMFGVLTAAPEEVEHKYTKVPPWPDKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E++ +I   L +   T      TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPINSYVKELKHYITWRLEDAHATKRDVVSTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   EK  ++++++ +L+VSG+V  D F   ++++A ++ DI
Sbjct: 1013 IGILTLDDRSGRMEVMLFSDALEKYLDLIEKDRILVVSGQVSFDDFNGGLKMSAREVLDI 1072

Query: 1066 NVARILYGKKFSV-MFNRTFNISILKK---ILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            + AR  Y +  ++ + +R  +    ++   IL+  +    +P  LYY  + + + ++   
Sbjct: 1073 SQAREKYLRGLAISVTDRQIDNKFFERFSDILVPHRAGT-VPVNLYYQRDNA-RAKLVLG 1130

Query: 1122 LNYKVQP----IDDLKLAL 1136
              ++V P    IDDLK  L
Sbjct: 1131 AEWRVTPDDKLIDDLKTLL 1149


>gi|259907557|ref|YP_002647913.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|387870314|ref|YP_005801684.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae DSM 12163]
 gi|224963179|emb|CAX54663.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|283477397|emb|CAY73313.1| DNA polymerase III alpha subunit [Erwinia pyrifoliae DSM 12163]
          Length = 1160

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1151 (42%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++ AA+   PA+ ITD +NL G++KFY +A+ +G+K
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +++E    + +++ +L  +N+GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNVSSEAMGDELTQITVLAADNDGYQNLTLLISRAYQRGYGPAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q GLI LSG   GD+G  +  G           + + FPD +Y+E+ R  +P+    
Sbjct: 122  AEHQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYLELIRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FL +++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIA+RCN+ +  G+  LP+FPT   ++  DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPT-GEMSTEDFLVVKSKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDENGDHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  K+  +      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYQFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++++  ALK A++  K   I Q+ +F        +   +Y  V  W ++ +L  
Sbjct: 893  PHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPEQIQLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A  + D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKFQHMLEKDRILIVSGQVSFDDFNGGLKMMARDMMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +  ++G +P  LYY   +  + +++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQ-REDARAKLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|119774291|ref|YP_927031.1| DNA polymerase III subunit alpha [Shewanella amazonensis SB2B]
 gi|119766791|gb|ABL99361.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 1157

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1159 (42%), Positives = 736/1159 (63%), Gaps = 37/1159 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DGL ++  ++  A  +   A+A+TD +NL G++KFY + ++KGIK
Sbjct: 4    PRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   + +L  +N GY  L +L+S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMLVPGFEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQGRVAIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  G++ LSGA  GD+G A+  G    A +  + + K FPD ++IE+ R  + +    
Sbjct: 122  LTYNSGILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIELIRTGRADEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +  A+ + LP+VAT+ + FL   +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP AI+NT+EIAKRCN+ +  G+  LP FPT   ++  DFL+ +SK GL
Sbjct: 242  SEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPT-GELSTADFLVERSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP     ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDVGRVL   Y F D ISK+IP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PGLQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+D  +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPVDIAAIPLDDSKSFS 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +LK+  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  VLKRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGH 658

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G++K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D     GL I+PP++N   + F   ++ D     I 
Sbjct: 779  PSEFMAAVMSADMDNTDKIVTLV-DECDRMGLKIIPPDVNKGLFKF--TVDED---LNIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +EAI+  RK G FT+LFDF  RID K +N+R+I  LI SGA D    
Sbjct: 833  YGIGAIKGVGEGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIYSGALDSLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K     Q  +F   NDD  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFGHLLEKDRILICEGEVSFDDFSGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKK---ILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
            I+ AR  + K   V + ++    ++L K   ++  +K    +P ++ +         ++ 
Sbjct: 1071 ISEARSHFAKALEVDLASQQATEAMLDKFFDVITPWK-GGAVPLIVNFS-RADASGRLQL 1128

Query: 1121 PLNYKVQPIDDLKLALINL 1139
              +++V P DDL LAL  L
Sbjct: 1129 GDDWRVDPSDDLVLALQTL 1147


>gi|26988338|ref|NP_743763.1| DNA polymerase III subunit alpha [Pseudomonas putida KT2440]
 gi|24983087|gb|AAN67227.1|AE016349_8 DNA polymerase III, alpha subunit [Pseudomonas putida KT2440]
          Length = 1174

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1182 (41%), Positives = 737/1182 (62%), Gaps = 51/1182 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSE+S++DGL+RI  + +A      PA+AITD SN+  ++KFYK+A   GIKPI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
             G D+W+         SR+  L  +  GY  L EL+S+ + +    G   ++ EW+    
Sbjct: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPA- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
              +GLIALS    GDIG+A+  GR D AE   + W  +FP+ FY+E+QR  +      + 
Sbjct: 124  -SEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVH 182

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A  +  P+VAT+ ++F+K+ +F AHE R CI EG  L + +R + ++ +Q  K+ 
Sbjct: 183  AAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSA 242

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF D+P AI NT+EIAKRCN++++ GK  LP FPTP  + I+D+L   +  GL++
Sbjct: 243  EEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLEE 302

Query: 305  RLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +PVGP
Sbjct: 303  RLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGP 362

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI YV +
Sbjct: 363  GRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAE 422

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A ++E
Sbjct: 423  AYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQE 480

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
              L + +K +E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E   G++
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE 600

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 659  ------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                  + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKKK  
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LKTHY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   + +DG   +I 
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNNDG---RIV 834

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD--- 888
            YGLGAIKG G+  +EAIV  R + G F +LFDF +RID K +N+R +++L+ SGA D   
Sbjct: 835  YGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLG 894

Query: 889  -CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLKEYL 933
              F+++           R  L++++  A+K AE+     +   + LF +  D  ++  Y 
Sbjct: 895  PHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYA 954

Query: 934  NYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGI 992
            N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP+    T++G+
Sbjct: 955  NHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGM 1014

Query: 993  ITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            I  L++    +G K+  + +DD S  +E  +    +   +++L+ + +++V G+V  D F
Sbjct: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDF 1074

Query: 1052 LKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLY 1107
               +R+  +++  +  AR    +   +       +   +  L +++ R   +   P  L 
Sbjct: 1075 SGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRH--RGACPITLE 1132

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1133 YT-GSDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173


>gi|312173372|emb|CBX81626.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 1160

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1151 (42%), Positives = 738/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL + + +++ AA+   PA+ ITD +NL G++KFY +A+ +G+K
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSPLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +++E    + +++ +L  +N GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFNVSSEAMGDELTQITVLAADNEGYQNLTLLISRAYQRGYGPAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++Q GLI LSG   GD+G  +  G +         + + FPD +Y+E+ R  +P+    
Sbjct: 122  AEHQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYLELIRTGRPDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FL +++F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIA+RCN+ +  G+  LP+FPT   +   DFL+ +SK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPT-GEMTTEDFLVVESKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFSPLYCDENGDHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  K+  +      +  +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM   R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++  GL +LPP+IN   Y F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECLR-MGLKVLPPDINSGLYQFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++++  ALK A++  K   I Q+ +F        +   +Y  V  W ++ +L  
Sbjct: 893  PHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPEQIQLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A  + D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKFQHMLEKDRILIVSGQVSFDDFNGGLKMMARDMMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +  ++G +P  LYY   +  + +++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQ-REDARAKLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|104783180|ref|YP_609678.1| DNA polymerase III subunit alpha [Pseudomonas entomophila L48]
 gi|95112167|emb|CAK16894.1| DNA polymerase III, alpha chain [Pseudomonas entomophila L48]
          Length = 1174

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1186 (41%), Positives = 736/1186 (62%), Gaps = 51/1186 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HSE+S++DGL+RI  + +A A    PA+AITD SN+  ++KFYK+A   G
Sbjct: 1    MSVSFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+         SR+  L  N  GY  L EL+S+ + +    G   I+ +W+
Sbjct: 61   IKPICGADLWLAGADSEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVIIQRDWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
                  +GLIALS    GDIG+A+  GR   AE     W  +FP+ FY+E+QR  +    
Sbjct: 121  APA--SEGLIALSAGKEGDIGMALMAGRQAEAEVLLGDWMGMFPERFYVEVQRTNRAGDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+K+++F AHE R CI EG  L + +R + ++ +Q 
Sbjct: 179  EYVHAAVALADQFGAPLVATNDVRFVKQSDFDAHETRVCIGEGWTLDDPRRPRGYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM +LF D+P AI NT+EIAKRCN+ ++ GK  LP FPTP  + I+D+L   S  
Sbjct: 239  LKSAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMGIDDYLRHVSHE 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL  L+        E+ R  Y  RL+FE++ II+M F GYFLIV DFI+WAKNN +
Sbjct: 299  GLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV + YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + +K++E+ R++ ++A ++EG+ R  G HAGGV+IAP+KL +F P+   E  
Sbjct: 477  YEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   K    + +++ +PL+D+
Sbjct: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKNNLPDVNIDFIPLDDR 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  KTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G +   +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA LS  M +T+K+ +LV++ +++  L +  P++N S + F   +  +G  
Sbjct: 777  KTHYPAPFMAAVLSADMHNTDKVVVLVEE-VRSMKLRLDAPDVNFSDFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YGLGAIKG G+  +EAIV  R + G F +LFDF +RID K +N+R +++LI SGA 
Sbjct: 832  -RIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRSGAL 890

Query: 888  D----CFNEK-----------RYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNL 929
            D     F+++           R  L++++  A+K AE+     +   + LF +  D  ++
Sbjct: 891  DRLGPHFHDEIKAYQANIDINRATLLSALGEAVKAAEQAAHTADSGHVDLFGSMFDEADV 950

Query: 930  KEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-T 988
              Y N+ KV   + K+ L  EK  LG  L+ H    YETEIR+F    + +LKP     T
Sbjct: 951  DVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPARDTQT 1010

Query: 989  VSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVL 1047
            ++G+I  L++    +G K+  + +DD S  +E  +    +   + +L+ + +++V G+V 
Sbjct: 1011 IAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQALLQTDAMVVVEGEVS 1070

Query: 1048 EDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLP 1103
             D F   +R+  + +  +  AR    +   +  +    +   +S L +++ R   + G P
Sbjct: 1071 NDDFSGGLRLRVKTVMTMEDARTKLAESLRLKLSHEALKGDRLSWLGELINRH--RGGCP 1128

Query: 1104 FVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
              L Y      K  ++F   + + P D L  AL +  G  N  ++Y
Sbjct: 1129 ITLEYT-GSDAKAMLQFGDQWSIDPADGLIQALRDQFGRENVFLQY 1173


>gi|398795123|ref|ZP_10555038.1| DNA-directed DNA polymerase III PolC [Pantoea sp. YR343]
 gi|398206954|gb|EJM93710.1| DNA-directed DNA polymerase III PolC [Pantoea sp. YR343]
          Length = 1160

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1154 (43%), Positives = 737/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +++ AA    PA+AITD  NL G+++FY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLVKKAAALGMPAIAITDYINLCGLVRFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + ++L LL  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIVGADFQVASELMGDELTQLTLLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDWLLE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                  LI LSG   GD+G ++  G + +       + + FP+ +Y+E+ R  + +    
Sbjct: 124  LGEG--LILLSGGRRGDVGRSLLRGNSAMVAQCLSFYQQHFPNRYYLELMRTGRADEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  +++  DFL++KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDFLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++R+  L+ DP +   +++ Y +RL+ E+  I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERMEFLFPDPAVRAEKRVEYDERLEIELTVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V D
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFLAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDENGQFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL-----NKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLPPIDIAAIPLEDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  FQ+GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFQDGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  +G   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYPFH--VNDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNEGGYFKELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L++++  ALK A++  K   I Q  +F        +   +Y  +  W ++ +
Sbjct: 890  RLGPHRAALMSALGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASITPWPEQIQ 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYSCTVS---GIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT    V+   G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVTVAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  IDD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTIDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + ++
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAKL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   +++ P D L
Sbjct: 1129 RFGAAWRISPSDRL 1142


>gi|332307490|ref|YP_004435341.1| DNA polymerase III subunit alpha [Glaciecola sp. 4H-3-7+YE-5]
 gi|332174819|gb|AEE24073.1| DNA polymerase III, alpha subunit [Glaciecola sp. 4H-3-7+YE-5]
          Length = 1155

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1150 (43%), Positives = 726/1150 (63%), Gaps = 30/1150 (2%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLR+HS+YS++DGL +I  +I    +   PA+A+TD  N+ G++KFY+ A+  GIKP
Sbjct: 5    KFVHLRVHSDYSMLDGLNKIKPLISQVKSLNMPAVALTDQMNMCGLVKFYEQAHANGIKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IIG D W+ +        RL LL  NN GY  +  L+SKAY+      +A I  EWL + 
Sbjct: 65   IIGTDFWVQSSALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAVIDQEWLAE- 123

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
             + +G+I LSG  +GD+G+ +  G   +AE     + + FPD FY+E+ R  +      I
Sbjct: 124  -HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQEHFPDRFYLELTRTARVGEEDYI 182

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
             + +  A   NLP+VAT+ + F+    F AHE+R  I +G  L++ +R K ++++Q  ++
Sbjct: 183  HRAVEWAGQHNLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLYSEQQYMRS 242

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EM +LF DIP AI+NT+EIAKRCN+ +  G   LP FPT  +++I DFL+  S+ GL+
Sbjct: 243  SEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPT-GDMSIADFLVKVSEEGLE 301

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            KRL  L+ D E    ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N IPVGPG
Sbjct: 302  KRLAFLFPDEEERLAKRPEYDERLKVELVVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG 361

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V + 
Sbjct: 362  RGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEM 421

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG+DAVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A +EEP
Sbjct: 422  YGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPG--MTLTKAFEEEP 479

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
            +L E    +EEV+ LI++A+ +EG+ RN G HAGGV+IAP K+ +F PLY  +     ++
Sbjct: 480  RLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPLYCDDEGKNPVT 539

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
            Q+DK+D+E  GL+KFDFLGL TL+I+   I  I   + K  +  +  +P++DK ++ LL+
Sbjct: 540  QFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIS--SGKGIDIDILAIPMDDKKSFKLLQ 597

Query: 604  KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYF 660
            ++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  
Sbjct: 598  RSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAI 657

Query: 661  NYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            +YPD        K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  EM 
Sbjct: 658  SYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAMGKKKPEEMA 717

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F+ GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + 
Sbjct: 718  KQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE 777

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  MD+T+KI  LV D  +  G+++LPP++N   Y F   ++S+G   +I YG+
Sbjct: 778  FMAAVMSADMDNTDKIVTLV-DECQRMGITLLPPDVNAGSYKF--TVDSEG---RIVYGI 831

Query: 836  GAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  I AI+  R+    FT+LFDF  ++D K IN+R++  L+ +GA D     R
Sbjct: 832  GAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLGPHR 891

Query: 895  YMLVASIDVALKNAEKTKKFIN--QLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              ++A++  A+  A++  K  +  Q  +F        +    +VKVP W +K  L  EK 
Sbjct: 892  ASIMATLPEAIAAADQHAKAESHGQSDMFGLLTTEPEQVEQAFVKVPPWPEKVWLDGEKD 951

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRGKIL-I 1008
             LG  L+ H    Y  EIR +    L +LKPT    VS   G++  +++ T  RG+   I
Sbjct: 952  TLGLYLTGHPINQYLQEIRHYCTGRLVDLKPTNKDVVSYAVGLVLGVRVMTNKRGRRWGI 1011

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            + +DD S  ++V     L+E+ ++IL+ + +L+VSG+V  D F     I A    DI  A
Sbjct: 1012 VTLDDKSARIDVRFFPDLFEQYEDILQSDRILVVSGQVSFDEFSGGNTIGARDAMDIVQA 1071

Query: 1069 RILYGKKFSVMFNRTF-NISILKKI-LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKV 1126
            R    K  S+ F+ ++ N S L K+  +    + G   V  + ++   +  +     + V
Sbjct: 1072 REKNAKWLSMQFDSSWCNASTLAKLQAILTPYQGGSCPVQAHVVHPDAEVTLALGAQWYV 1131

Query: 1127 QPIDDLKLAL 1136
             P D L   L
Sbjct: 1132 TPEDQLLFEL 1141


>gi|365837033|ref|ZP_09378415.1| DNA polymerase III subunit alpha [Hafnia alvei ATCC 51873]
 gi|364562910|gb|EHM40737.1| DNA polymerase III subunit alpha [Hafnia alvei ATCC 51873]
          Length = 1144

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1145 (43%), Positives = 730/1145 (63%), Gaps = 33/1145 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL ++  +++  A    PA AITD +N+ G++KFY SA+  GIKPIIG DV + +E+
Sbjct: 1    MIDGLAKVGPLVKKVAALGMPAFAITDHTNMCGLVKFYGSAHGAGIKPIIGADVLVKSEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + S L +L  NN GY  L  L+S+AY          I  +WL   +Y++GLI LSG 
Sbjct: 61   LGDELSHLTILAANNTGYQNLTLLISQAYQRGYGADGPVIDRDWL--VEYREGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              GD+G  +  G   +A      + + F D++Y+E+ R  +P+    +   + +A    L
Sbjct: 119  RQGDVGKMLLRGNQQLAHECVDFYQQHFADSYYLELIRTGRPDEESYLHFAVALAEEREL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR K ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPKNYSAQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++N++EIAKRCN+ +  G+  LP+FPT   ++  DFL++KSK GL++RL  L+ DPE+
Sbjct: 239  EALENSVEIAKRCNVTIRLGEYFLPQFPT-GEMSTEDFLVAKSKEGLEERLEFLFPDPEV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RDRVI +V + YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAEMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P +PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPEPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY        ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I+D  +  I     K       +  +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIIDWALEMINARRAKAGEDPIDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEVSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFKEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             + G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  ERMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL +LPP+IN  +Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWR-MGLKVLPPDINSGQYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G F  LFD   R D K +NRR++  LI SGAFD     R  L+ S++ A
Sbjct: 830  IEAIIDARNEGGHFKELFDLCARTDTKKLNRRMLEKLIMSGAFDRLGPHRAALMNSLNDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q+ +F        +   +Y  V  W  +  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYSSVAPWPAQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI ++   + L ++ PT      T  G++   ++ TT RG +I +  +DD S  
Sbjct: 950  ITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVVAARVMTTKRGNRIGVCTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K +++L+++ +LI SG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQHLLEKDRILIASGQVSFDDFSGGLKMIARELMDISEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKL 1134
            + + +R  +  +L ++   L       +P  LYY  + + + +++F   ++V P D L +
Sbjct: 1070 ISLTDRQIDDQLLNRLRDSLEPHRSGTIPVHLYYQRDNA-RAKLRFGAAWRVTPTDRLLV 1128

Query: 1135 ALINL 1139
             L  L
Sbjct: 1129 DLRTL 1133


>gi|416893218|ref|ZP_11924504.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus ATCC
            33389]
 gi|347814246|gb|EGY30896.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus ATCC
            33389]
          Length = 1160

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1157 (42%), Positives = 735/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+A+TD +N  G+++FY  A + G+K
Sbjct: 6    PRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMALTDFTNFCGLVRFYGEALSSGVK 65

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + +E+   +P  L LL KNN GY  +  LLS+AY E        I  +WL +
Sbjct: 66   PIIGADVLVKSELCGDEPFHLTLLAKNNEGYKNITLLLSRAY-ERGYSDLPYIDQQWLVE 124

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  DG+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+    
Sbjct: 125  HK--DGIIILSGGVRGDVGRKLLRNNADELKSAVDFYREFFPDHFYLTLTRTGRPDEERY 182

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 183  IQAALELAEREQLPVVATNDVCFLQADDFEAHEIRVAIHDGFTLDDPKRPKLYTHQQYFR 242

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  D+L+ ++K GL
Sbjct: 243  SEQEMCELFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDYLVKRAKEGL 301

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 302  EERLKVLFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNNIPVGP 361

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRD VI++V +
Sbjct: 362  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDCVIEHVAE 421

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 422  MYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAFEAE 479

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E    +EEVR +I++A ++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 480  PKLQEIYDADEEVRAIIDMACKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGKHPV 539

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       +N +PL+D  ++ 
Sbjct: 540  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDINTIPLDDHQSFE 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 600  VLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 659

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 660  EEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 719

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 720  EMAKQRSVFEEGAIKNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 779

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ +I 
Sbjct: 780  PAEFMAAVMTSEMDNTDKIVGLYDECMRM-GLKVVPPDINTGKHHF-----SVNENGEIV 833

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD   
Sbjct: 834  YGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFDKLG 893

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      N +   +Y  +  W++K  L  
Sbjct: 894  PHRAALQRNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIVPWTEKTILDG 953

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +G  
Sbjct: 954  ERETLGLYLSSHPVSRYLKELSHYSPVRLKELTPNYRGQMSTASGLVVNTRIAVTKKGNH 1013

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I  IDD S  +++ +  +  +K    L+++ +++VSG+V  D F + +R++   +  I
Sbjct: 1014 IGIATIDDRSGRLDLTLFGETLDKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDLMTI 1073

Query: 1066 NVARILYGKKFSVMFNR-TFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  N+   N + +K  K +L     N LP  +YY ++   +  +K  +
Sbjct: 1074 DEARARYAKSLAICLNQEQINTTFIKQFKAILAPYSGNTLPVHIYY-LSPQGRALVKMGV 1132

Query: 1123 NYKVQPIDDLKLALINL 1139
             + V P D+L   L+  
Sbjct: 1133 QWSVNPTDELLGELVEF 1149


>gi|383310874|ref|YP_005363684.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. HN06]
 gi|417852969|ref|ZP_12498414.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            gallicida str. Anand1_poultry]
 gi|421262731|ref|ZP_15713827.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. P52VAC]
 gi|425062713|ref|ZP_18465838.1| DNA polymerase III alpha subunit [Pasteurella multocida subsp.
            gallicida X73]
 gi|338215790|gb|EGP02019.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            gallicida str. Anand1_poultry]
 gi|380872146|gb|AFF24513.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. HN06]
 gi|401690537|gb|EJS85780.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. P52VAC]
 gi|404383728|gb|EJZ80174.1| DNA polymerase III alpha subunit [Pasteurella multocida subsp.
            gallicida X73]
          Length = 1159

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1158 (42%), Positives = 733/1158 (63%), Gaps = 49/1158 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+I+G+ ++  +I+A  +++  A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PIIG DV + +E+   +P  L LL KNN GY  +  LLSKAY    +++ Y    +   W
Sbjct: 64   PIIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQDLPY----LDQAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++  +G+I LSG H GD+G  +  G     E+    +   FPD+FY+ + R  +   
Sbjct: 120  LAEHR--EGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSLSRTGRYEE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A    LP+VAT+ + FL + +F AHE+R  I +   L + KR K +T +Q
Sbjct: 178  ERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKRPKLYTNQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  DFL+ KSK
Sbjct: 238  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDFLVKKSK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++ +  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct: 417  VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P  + +F PLY      
Sbjct: 475  AAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
              ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  INT+          +  +PL+
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINTRLAKEGKPPVDIATIPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  ++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF 
Sbjct: 592  DPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFI 651

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E   YPDP       K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+
Sbjct: 652  DRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAM 711

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   R+ F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 712  GKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 771

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTHY + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S  
Sbjct: 772  WLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRM-GLKVAPPDINTGKHHF-----SVN 825

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            +H +I YG+GAIKG G+  IEA+++ R + G F +LFD   R+D K INRR   SLI SG
Sbjct: 826  EHGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSG 885

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L  +++ ALK +++  K   + Q  +F     ++      Y   P WS+
Sbjct: 886  AFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRWSE 945

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
            K  L  E++ LG  LS H    Y  E+  +    L +L P       TVSG++   +   
Sbjct: 946  KVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAV 1005

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T +G ++ I  +DD S  +++ +  +  +K  + L+++ ++IVSG+V  D F   ++++ 
Sbjct: 1006 TKKGNRLGIATLDDRSGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSV 1065

Query: 1060 EKIFDINVARILYGKKFSVMFNR-----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
             ++  ++ AR  Y K  ++  +      TF I  LK +L  +     LP  +YY  + + 
Sbjct: 1066 RELMSLDEARSRYAKSLAICLSEENMKPTF-IRELKALLTPYSGGT-LPIYVYYA-STAG 1122

Query: 1115 KYEMKFPLNYKVQPIDDL 1132
            +  +K  + + V P D L
Sbjct: 1123 QCRVKMGVQWSVNPTDQL 1140


>gi|424815096|ref|ZP_18240247.1| DNA polymerase III subunit alpha [Escherichia fergusonii ECD227]
 gi|325496116|gb|EGC93975.1| DNA polymerase III subunit alpha [Escherichia fergusonii ECD227]
          Length = 1150

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1144 (43%), Positives = 728/1144 (63%), Gaps = 33/1144 (2%)

Query: 10   LHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDV 69
            +HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D 
Sbjct: 1    MHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADF 60

Query: 70   WITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGL 129
             +  ++   + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GL
Sbjct: 61   NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGL 118

Query: 130  IALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINI 189
            I LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +
Sbjct: 119  ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 178

Query: 190  ASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIK 249
            A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +
Sbjct: 179  AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 238

Query: 250  LFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNL 309
            LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L
Sbjct: 239  LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFL 297

Query: 310  YKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGAS 369
            + D E     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA 
Sbjct: 298  FPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAG 357

Query: 370  SLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAV 429
            SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAV
Sbjct: 358  SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 417

Query: 430  SQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERI 489
            SQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  
Sbjct: 418  SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIY 475

Query: 490  KNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDD 549
            + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D
Sbjct: 476  EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 535

Query: 550  IEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANT 607
            +E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T
Sbjct: 536  VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 595

Query: 608  VAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPD 664
             AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD
Sbjct: 596  TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 655

Query: 665  PR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
             +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R 
Sbjct: 656  VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 715

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F  GA K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA
Sbjct: 716  VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 775

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIK
Sbjct: 776  VMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIK 829

Query: 840  GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            G G+  IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+
Sbjct: 830  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 889

Query: 899  ASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGF 956
             S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG 
Sbjct: 890  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 949

Query: 957  CLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVI 1011
             L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +
Sbjct: 950  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1009

Query: 1012 DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARIL 1071
            DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  
Sbjct: 1010 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK 1069

Query: 1072 YGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P
Sbjct: 1070 YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSP 1128

Query: 1129 IDDL 1132
             D L
Sbjct: 1129 SDRL 1132


>gi|383316021|ref|YP_005376863.1| DNA-directed DNA polymerase III PolC [Frateuria aurantia DSM 6220]
 gi|379043125|gb|AFC85181.1| DNA-directed DNA polymerase III PolC [Frateuria aurantia DSM 6220]
          Length = 1184

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1178 (42%), Positives = 712/1178 (60%), Gaps = 73/1178 (6%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +FI L LHSEYS++D  +RI  ++ A A    PA+A+TD SN+F ++KFYK+    G
Sbjct: 1    MSARFIPLHLHSEYSLVDSTIRIKQLVAACAEAGLPAVALTDDSNMFALVKFYKACSAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E + P R+ LL +N  GYL L  L+S+ + +    GR  +  +WL
Sbjct: 61   IKPICGSDLWLAGHDEGR-PWRMTLLCQNREGYLNLSRLVSQVWRDGQTAGRPLLDTQWL 119

Query: 121  E--KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178
                +    GLIAL G       +A+  G  D+A    + W + FPD  Y+E+ R   P 
Sbjct: 120  GTGPDGASAGLIALFGRDSETARLAMDQGL-DVARTALQPWLQRFPDRLYLELSRTGHPR 178

Query: 179  MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
                    + +A+ ++LP++A++  +FLK+++F AHE R CI +G +L++ KR + +T +
Sbjct: 179  EEHWNNLALQLATELDLPVIASNDTRFLKQSDFDAHEARVCINQGRVLADPKRPRDYTDQ 238

Query: 239  QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
            Q  K    M  LF D+P A++NT+E+A+RCNL+L FG   LP FP P+  ++  ++   +
Sbjct: 239  QYLKNAEAMAALFADVPEALENTVELARRCNLELSFGTYYLPDFPVPEGHDLASYIREIA 298

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            + GLK+RL      P         Y+ RL+ E++ IIKM F GYFLIV+DFI W K N I
Sbjct: 299  REGLKERLAAA---PLAEGHSLADYEARLERELDVIIKMGFPGYFLIVADFINWGKQNGI 355

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVA+ L ITD+DPL +NLLFERFLNP R+SMPDFDIDFC + RD VI 
Sbjct: 356  PVGPGRGSGAGSLVAWVLKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVID 415

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKL-----I 473
            YV  +YG+D VSQI+T+G+MAAK  +RD GRVL + Y+  D I+KL+P +P  L     +
Sbjct: 416  YVSRKYGRDHVSQIITYGSMAAKAVLRDSGRVLGMGYNAVDRIAKLVPPRPLDLTLSCVL 475

Query: 474  TLSNAIKEEP-----QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLIN 528
              S   K+EP     +  E    +EE R LI+LA  +E + RNVG HAGGV+IAP+ L +
Sbjct: 476  GRSEKAKKEPDRVVREFCELYDQDEEARALIDLALSLENLTRNVGKHAGGVVIAPTPLTD 535

Query: 529  FCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--- 585
            F PLY + G  G+++QYDKDD+E +GL+KFDFLGL TL+I+D   + +K IN +      
Sbjct: 536  FAPLYCEPGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIID---WAVKAINRRREAAGE 592

Query: 586  --FSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPG 643
                +  LPL+D  TY+LLK A TVAVFQLES GM+ MLK+A+ D FE+IIAL++LYRPG
Sbjct: 593  ALLDIESLPLDDAATYDLLKSARTVAVFQLESSGMQRMLKDAQADRFEDIIALVALYRPG 652

Query: 644  PMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLL 702
            PMDLI +F  RKHG E   YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGYSLG ADLL
Sbjct: 653  PMDLIPSFVARKHGREDVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLL 712

Query: 703  RRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLS 762
            RRA+GKKK  EM + R  F+ GA K GL+  KA+ IF+ +EKFAGYGFNKSHA AYAL+S
Sbjct: 713  RRAMGKKKVEEMAKERAKFREGAAKDGLTGEKADAIFDLMEKFAGYGFNKSHAAAYALVS 772

Query: 763  YYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPII 822
            Y TA+LK HY + FMAA +S  MD+T+K  +   D  +  GL ILPP++N S + F  + 
Sbjct: 773  YQTAWLKAHYPAEFMAATISSDMDNTDK-AVTFLDESRAIGLEILPPDVNHSDFMFVAV- 830

Query: 823  ESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSL 881
                + + IRYGLGAIKG G+   EAIV ER+  G +T+L DF +RI    +N+R++ +L
Sbjct: 831  ----EPRVIRYGLGAIKGVGEGVCEAIVAERRQHGAYTDLGDFCRRIGDAKLNKRVLEAL 886

Query: 882  INSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKND------DNNNLKEYLNY 935
            + SGA D     R  L+A +  A++ A++  +  NQLS  +ND        +     L  
Sbjct: 887  LLSGALDALGPHRACLMAQLPDAIRAADQHLR--NQLS-GQNDMFGAPAGASGPALALEM 943

Query: 936  VKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL-------------- 981
             +VP W  +Q L  E+  LG  LS H    +  E+ Q     L E+              
Sbjct: 944  PQVPEWPLEQLLNGERDTLGHFLSGHPTDPWREELAQLASCPLGEIVERYQPPRPRKSDG 1003

Query: 982  --------KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNI 1033
                     P    TV+G++T ++ +         + ++D S  +EV     LY++   +
Sbjct: 1004 DEGNRFRRGPDTPWTVAGLVTAIRKRGDSDA---YVRLEDGSGLIEVSFFGDLYQQVAPL 1060

Query: 1034 LKENELLIVSGKVLEDRFL-KNIRINAEKIFDINVARILYGKKFSVMFNRT---FNISIL 1089
            L  +++L+V G +  D F     ++ A+    ++ A   Y +   +  N     F+ S L
Sbjct: 1061 LVRDQMLVVEGGLRVDEFSGGGFQLRAKSAMSLDDACRRYARLLKLSLNGVRPDFSAS-L 1119

Query: 1090 KKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQ 1127
            +++L  F+       VL    N+  + +++   +++V+
Sbjct: 1120 QQVLNGFRGGRAT-VVLSGYQNRQARADLELGEDWRVE 1156


>gi|378774902|ref|YP_005177145.1| DNA polymerase III subunit alpha [Pasteurella multocida 36950]
 gi|356597450|gb|AET16176.1| DNA polymerase III subunit alpha [Pasteurella multocida 36950]
          Length = 1159

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1158 (42%), Positives = 733/1158 (63%), Gaps = 49/1158 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+I+G+ ++  +I+A  +++  A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PIIG DV + +E+   +P  L LL KNN GY  +  LLSKAY    +++ Y    +   W
Sbjct: 64   PIIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQDLPY----LDQAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +  Y++G+I LSG H GD+G  +  G     E+    +   FP++FY+ + R  +   
Sbjct: 120  LAE--YREGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPEHFYLSLSRTGRYEE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A    LP+VAT+ + FL + +F AHE+R  I +   L + KR K +T +Q
Sbjct: 178  ERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKRPKLYTNQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  DFL+ KSK
Sbjct: 238  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDFLVKKSK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++ +  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct: 417  VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P  + +F PLY      
Sbjct: 475  AAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
              ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  INT+          +  +PL+
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINTRLAKEGKPPVDIATIPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  ++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF 
Sbjct: 592  DPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFI 651

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E   YPDP       K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+
Sbjct: 652  DRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAM 711

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   R+ F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 712  GKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 771

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTHY + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S  
Sbjct: 772  WLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVAPPDINTGKHHF-----SVN 825

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            +H +I YG+GAIKG G+  IEA+++ R + G F +LFD   R+D K INRR   SLI SG
Sbjct: 826  EHGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSG 885

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L  +++ ALK +++  K   + Q  +F     ++      Y   P WS+
Sbjct: 886  AFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRWSE 945

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
            K  L  E++ LG  LS H    Y  E+  +    L +L P       TVSG++   +   
Sbjct: 946  KVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAV 1005

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T +G ++ I  +DD S  +++ +  +  +K  + L+++ ++IVSG+V  D F   ++++ 
Sbjct: 1006 TKKGNRLGIATLDDRSGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSV 1065

Query: 1060 EKIFDINVARILYGKKFSVMFNR-----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
             ++  ++ AR  Y K  ++  +      TF I  LK +L  +     LP  +YY  + + 
Sbjct: 1066 RELMSLDEARSRYAKSLAICLSEENMKPTF-IRELKALLTPYSGGT-LPIYVYYA-STAG 1122

Query: 1115 KYEMKFPLNYKVQPIDDL 1132
            +  +K  + + V P D L
Sbjct: 1123 QCRVKMGVQWSVNPTDQL 1140


>gi|383935859|ref|ZP_09989292.1| DNA polymerase III subunit alpha [Rheinheimera nanhaiensis E407-8]
 gi|383703178|dbj|GAB59383.1| DNA polymerase III subunit alpha [Rheinheimera nanhaiensis E407-8]
          Length = 1156

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1087 (44%), Positives = 703/1087 (64%), Gaps = 34/1087 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR+HS++S++DGL ++  +++AA     PALA+TD  N  G+++FY +A+  GIK
Sbjct: 4    PTFIHLRVHSDFSMVDGLAKVKPIVKAAQKLAMPALALTDQMNFCGLVRFYSTAHEAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D ++ + +   + SR+LLL  +N GY  L +L+SKAY+     G+ +I  +WL  
Sbjct: 64   PIVGVDCYVRHPLFGNETSRMLLLAADNTGYQNLSQLISKAYLRGHVDGKPQIEHDWLAD 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  G+I LSG   G +G A+        +     + + F D FY+E+ R  +P+    
Sbjct: 124  --YSQGVIMLSGGKDGLLGKALLKENPHSIKELLAFYQQHFADRFYLELIRTGRPDEELY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ+ +++A    LP+VAT+ + FL+  +F AHE+R  I +G  L + +R + ++++Q  K
Sbjct: 182  IQKAVSLAEQYQLPLVATNEVVFLQPDDFAAHEIRVAIHDGFTLDDKRRPQNYSQQQYLK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M +LF D+P A++N++EIAKRCN+ +  G+  LP FPT   +   DFL+ KS+ GL
Sbjct: 242  SEQDMQQLFADLPEALENSVEIAKRCNVTIRLGEYFLPAFPT-GGMTDADFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RLL L+ D  +   ++  Y +RLQ E++ I +M F GYFL+V +FIQW+K+N IPVGP
Sbjct: 301  EERLLQLFPDEAVRAEKRTEYDERLQIELDVINQMGFPGYFLVVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A KEE
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPTPG--MTLEQAFKEE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + ++EV+ LI++A+Q+EG+ RN G HAGGV+IAP+K+ +F PLY  +     +
Sbjct: 479  PRLPELYQQDQEVKDLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDDEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+IL    + +   N + +        +NK+PL DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTILQ---WAVNMANARLSREGKPLVDINKIPLTDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            +Y++L KA+T AVFQLES+GMK++++  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SYDVLMKADTTAVFQLESRGMKDLIRRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
             G E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKK
Sbjct: 656  RGREEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYSLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  FQ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++K
Sbjct: 716  KPEEMAKQRDTFQQGAANNGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA +S  MD+T+KI  LV D  +   L ++PP++N   Y F     +  +  
Sbjct: 776  AHYPAEFMAAVMSADMDNTDKIVTLV-DECERMKLKLIPPDVNTGVYKF-----TVNEQG 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             I YG+GAIKG G+  IEAI+  R + G F++LFDF  ++D K +NRR+I  LI SGA D
Sbjct: 830  HIVYGIGAIKGVGEGPIEAILQARQQHGSFSDLFDFCAKVDLKKLNRRVIEKLILSGAMD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+AS++ A+K AE+  K   + Q  LF             + +V  W  +  
Sbjct: 890  RLGPHRAALMASLEEAMKAAEQHAKAQAVGQDDLFGLLSPEPEHAAAAFKQVAPWPDEVW 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYR 1003
            L  E++ LG  L+ H    Y  EI ++I   LSEL+PT    S TV+G++  +++    +
Sbjct: 950  LEGERETLGLYLTGHPINRYLDEIPRYINCRLSELQPTRKDQSVTVAGLVVSVRVMINKK 1009

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +  I+ +DD S  ++V     L E  +  L+++ +L+++G+V  D F   + +    +
Sbjct: 1010 GRRWAIVTLDDKSARLDVRFFPDLLESFEQQLQKDSILVITGQVSFDDFNGGLTMTGRDV 1069

Query: 1063 FDINVAR 1069
             +I   R
Sbjct: 1070 SEITAVR 1076


>gi|289825701|ref|ZP_06544869.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-3139]
          Length = 1063

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1070 (45%), Positives = 697/1070 (65%), Gaps = 29/1070 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + NE+   + + L +L  NN GY  L  L+SKAY          I  +WL +
Sbjct: 64   PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG  +GD+G  +  G   + E     +   FPD +++E+ R  + +    
Sbjct: 124  LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK +++
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
            +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F + 
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFRRG 1062


>gi|308185755|ref|YP_003929886.1| DNA polymerase III subunit alpha [Pantoea vagans C9-1]
 gi|308056265|gb|ADO08437.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
          Length = 1160

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1154 (42%), Positives = 735/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +I+ AA    PA+AITD +NL G++KFY  A++ GIK
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D  + +E+   + ++L +L  ++ GY  L  L+S+AY          I  +WL  
Sbjct: 64   PVIGADFNVASELMGDELTQLTVLASSDTGYQNLTLLISRAYQRGYGVDGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSG   GD+G ++  G N +       + + FPD +Y+E+ R  + +    
Sbjct: 122  IELQEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVVKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D      ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLVFLFPDEAERAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL      +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEHGQFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKEGLEPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN S  Y F + E+     
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDIN-SGLYPFHVNEA----G 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L++++  ALK A++  K   I Q  +F        +   +Y  V  W ++ +
Sbjct: 890  RLGPHRAALMSALSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPEQVQ 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT        +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + ++
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAKL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   +++ P D L
Sbjct: 1129 RFGAAWRISPSDRL 1142


>gi|343496831|ref|ZP_08734918.1| DNA polymerase III subunit alpha [Vibrio nigripulchritudo ATCC 27043]
 gi|342820624|gb|EGU55443.1| DNA polymerase III subunit alpha [Vibrio nigripulchritudo ATCC 27043]
          Length = 1159

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1093 (44%), Positives = 705/1093 (64%), Gaps = 28/1093 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPIVKKVAEYGMPAMALTDFTNLCGLVKFYNTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L  +N GY  L  L+S+AY       +  I   WL  
Sbjct: 64   PIIGADFTMQSEEFGDELTKLTVLASDNTGYKNLTLLISEAYQRGHVQHQPVIDKSWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +Y +GLI LSG  +G++G A+  G   +       +   FPD FY+E+ R  + +    
Sbjct: 122  AQYSEGLIILSGGRVGEVGRALLKGNQALVSECVEFYKTHFPDRFYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A    LP+VAT+ + F+ + +F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDLADKAELPVVATNDVVFITEDQFDAHEIRVAIHDGFTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFLI KSK GL
Sbjct: 242  TEDEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGLAIEDFLIKKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL  E+E +  M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  ERRLAFLFPDEEERAKRRPEYDERLDIELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PQLPEIYEADEEVKELIDMCRVLEGCTRNAGKHAGGVVISPTTITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKVGKEKVRIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        KD L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDETWQHESLKDTLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++  G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLKVLPPDINSGLYRFN--VDDTG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IE I+  R + G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIENIIAAREEGGYFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A+K A +  +     Q+ +F    +        Y +VP+W +K  L  
Sbjct: 893  PHRAAMMASLDDAVKAASQHHQAESFGQVDMFGVLTDAPEDVETKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L + +PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPINTYIKELGKYTSCRLKDAQPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   E+   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALERYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSV 1078
              AR  Y +  SV
Sbjct: 1073 GNAREKYARGLSV 1085


>gi|390436918|ref|ZP_10225456.1| DNA polymerase III subunit alpha [Pantoea agglomerans IG1]
          Length = 1160

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1155 (43%), Positives = 734/1155 (63%), Gaps = 41/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +I+ AA    PA+AITD +NL G++KFY  A++ GIK
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D  + +E+   + ++L +L  +N GY  L  L+S+AY          I  +WL  
Sbjct: 64   PVIGADFNVASELMGDELTQLTVLASSNTGYQNLTLLISRAYQRGYGVDGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSG   GD+G ++  G N +       + + FPD +Y+E+ R  + +    
Sbjct: 122  IELQEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVVKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            ++RL  L+ D E  + EK   Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVG
Sbjct: 301  EERLEFLFPD-EAERLEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V 
Sbjct: 360  PGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            D YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   
Sbjct: 420  DMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFIA 477

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EPQL      +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     
Sbjct: 478  EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEHGQFP 537

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDK 596
            ++Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK
Sbjct: 538  VTQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIASIPLDDK 594

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             ++++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  R
Sbjct: 595  KSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654

Query: 655  KHG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GK
Sbjct: 655  KHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +L
Sbjct: 715  KKPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +   G  
Sbjct: 775  KAHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYQFH--VNDAG-- 829

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAF
Sbjct: 830  -EIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAF 888

Query: 888  DCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQ 945
            D     R  L++S+  ALK A++  K   I Q  +F        +   +Y  V  W ++ 
Sbjct: 889  DRLGPHRAALMSSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPEQV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTT 1001
            +L  E++ LG  L+ H    Y  EI +++  + L ++ PT        +G++   ++  T
Sbjct: 949  QLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVMVT 1008

Query: 1002 YRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A 
Sbjct: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAR 1068

Query: 1061 KIFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYE 1117
            ++ DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + +
Sbjct: 1069 EVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAK 1127

Query: 1118 MKFPLNYKVQPIDDL 1132
            ++F   +++ P D L
Sbjct: 1128 LRFGAAWRISPSDRL 1142


>gi|304396659|ref|ZP_07378540.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
 gi|440759543|ref|ZP_20938677.1| DNA polymerase III alpha subunit [Pantoea agglomerans 299R]
 gi|304356168|gb|EFM20534.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
 gi|436426725|gb|ELP24428.1| DNA polymerase III alpha subunit [Pantoea agglomerans 299R]
          Length = 1160

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1154 (42%), Positives = 734/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +I+ AA    PA+AITD +NL G++KFY  A++ GIK
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D  + +E+   + ++L +L  +N GY  L  L+S+AY          I  +WL  
Sbjct: 64   PVIGADFNVASELMGDELTQLTVLASSNTGYQNLTLLISRAYQRGYGVDGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSG   GD+G ++  G N +       + + FPD +Y+E+ R  + +    
Sbjct: 122  IELQEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVVKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D      ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDEAERAEKRPEYDERLEIELTVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL      +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEHGQFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIASIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSIFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN S  Y F + ++     
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDIN-SGLYPFHVNDA----G 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L++S+  ALK A++  K   I Q  +F        +   +Y  V  W ++ +
Sbjct: 890  RLGPHRAALMSSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPEQVQ 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT        +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + ++
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVNLYYQ-RADARAKL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   +++ P D L
Sbjct: 1129 RFGAAWRISPSDRL 1142


>gi|333908979|ref|YP_004482565.1| DNA polymerase III subunit alpha [Marinomonas posidonica IVIA-Po-181]
 gi|333478985|gb|AEF55646.1| DNA polymerase III, alpha subunit [Marinomonas posidonica
            IVIA-Po-181]
          Length = 1159

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1158 (44%), Positives = 739/1158 (63%), Gaps = 43/1158 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   FIHL++H+E+S++DGL+++  ++        PA+AITD +NL G ++FYK A +KG
Sbjct: 1    MSASFIHLKVHTEFSLVDGLVKVKGLLGTTELMSMPAVAITDENNLCGFVRFYKGAMDKG 60

Query: 61   IKPIIGCDVWI---TNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI 117
            IKPI G DV I   T E+E++   R+ LL  +N GY  + E++SK Y      GR  I+ 
Sbjct: 61   IKPICGTDVVIADDTGELESR--YRMTLLAMSNKGYKNIIEIISKGYQLGQVEGRPIIQR 118

Query: 118  EWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
            EW+E +   + +IALSGA  GDIG+ +Q GR ++A+     W  +FPD FY+E+QR  + 
Sbjct: 119  EWIEASS--EDVIALSGAGYGDIGLLLQKGRPELAKQHLSYWMSVFPDRFYVELQRTSRA 176

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
                 I   + +A+ +  P+VAT+ ++FLK+  F AHE R CI +G  L + +R++++++
Sbjct: 177  GEEDYIHAVVPLAAELGCPVVATNDVRFLKRENFEAHEARVCIHDGVTLDDPRRVRRYSE 236

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            EQ FKT  EM +LF DIP A++NT+EIAKRC++ +  GK  LP +P P  + + +F    
Sbjct: 237  EQYFKTPEEMAELFQDIPEALENTVEIAKRCSVDVLLGKYFLPDYPVPDGMTMEEFFNKL 296

Query: 298  SKHGLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
            S  GLK+R  + + K  E  +  +  Y  RL FE+  I +M F GYFLIV DFIQWAK+N
Sbjct: 297  SFDGLKERFDVLVLKYGERIEKRRQEYWDRLDFELNIINQMGFPGYFLIVMDFIQWAKDN 356

Query: 357  SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
             IPVGPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+V
Sbjct: 357  DIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKV 416

Query: 417  IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
            I YV   YG+DAVSQI+TFG MAAK  +RDV RV    YS  D +SKLIPF+ G  +TLS
Sbjct: 417  IDYVSRTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIG--MTLS 474

Query: 477  NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQE 536
             A++EEP L E + ++EE   ++E+A  +EG++RN G HAGGV+IAP+KL++F PLY +E
Sbjct: 475  KALEEEPALPEFLSSDEEAADVMEMAMSLEGVVRNFGKHAGGVVIAPTKLVDFAPLYCEE 534

Query: 537  GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLN 594
              +G+++QYDK+D+EE GL+KFDFLGL TL+++D  +  I  I+       L+   + L 
Sbjct: 535  DGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWAVKNINDIHALEGKPPLDIALIDLE 594

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFC 652
            DK TY+LL++A T AVFQLES+GMK ++K+  P  FE+IIAL++LYRPGP+   ++ +F 
Sbjct: 595  DKSTYDLLQRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLGSGMVDDFI 654

Query: 653  RRKHGE---YFNYPDPRTKD---VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG     F +PD +  D   VL  TYGI++YQEQVMQIAQ+L  +SLG ADLLRRA+
Sbjct: 655  NRKHGRSELAFPHPDYQHNDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGGADLLRRAM 714

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK   M E R  F  GA+K  + K  +  IF+ +EKFAGYGFNKSH+ AYAL+SY TA
Sbjct: 715  GKKKAEVMAEQRLIFMEGALKNNVDKDLSGNIFDLMEKFAGYGFNKSHSAAYALVSYQTA 774

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LK HY + FMAA LS  M +T+KI I +++  ++  L++  PN+N S Y F     +  
Sbjct: 775  WLKNHYPAPFMAAVLSADMQNTDKIVIFIEEC-RSMNLALELPNVNESVYKF-----TVN 828

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
              + I YGLGAIKG G+  IEAIV  RK G F ++FDF +R+ KK +N+R++ +L+ SGA
Sbjct: 829  PKEAIVYGLGAIKGVGEGPIEAIVEARKDGPFEHIFDFCQRVGKK-VNKRVMEALVRSGA 887

Query: 887  FDCFNEKRYMLVASIDVALKNAEKTKKFINQ----LSLFKNDDNNNLKEYLNYVKVP-SW 941
            FD     R  L A ID ALK A +  K  NQ    + LF      N ++    + +   W
Sbjct: 888  FDTIGPNRATLYACIDEALKRAVQDAK--NQDAGMMDLFGVAVEENTEDAYKEIGIQHEW 945

Query: 942  SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT--VSGIITELKL- 998
              +Q L  EK  LG  ++ H    YE E+R+F    + +L+P    T  ++G+I +L++ 
Sbjct: 946  PGRQRLDGEKDTLGLYVTGHPIDEYEKEVRRFARSKIVDLQPKRGDTQVMAGLIVDLRVT 1005

Query: 999  KTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
            K+   G I  + +DD S  +EV +    YE  K+++ ++E+++V G++  D F    ++ 
Sbjct: 1006 KSKKGGNIAFVTLDDRSARIEVTVFPDNYENFKDVIVKDEVVVVEGEISVDEFRGGQKVI 1065

Query: 1059 AEKIFDINVARILYGKKFSVMFNR----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
            A  + DI  ARI Y +   + ++        I  L   +  F+  +G   V+ +   ++ 
Sbjct: 1066 ARNVLDIAQARIRYVEALRITWSSETVTPAEIQSLADQMSEFR-GDGCDVVIGFDTPEAF 1124

Query: 1115 KYEMKFPLNYKVQPIDDL 1132
              +++   +++V+P DDL
Sbjct: 1125 G-DIRLGSSWRVRPDDDL 1141


>gi|152995316|ref|YP_001340151.1| DNA polymerase III subunit alpha [Marinomonas sp. MWYL1]
 gi|150836240|gb|ABR70216.1| DNA polymerase III, alpha subunit [Marinomonas sp. MWYL1]
          Length = 1158

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1156 (44%), Positives = 730/1156 (63%), Gaps = 40/1156 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   FIHLR+H+E+S++DGL++I  ++        PA+AITD +NL G ++FYK A  KG
Sbjct: 1    MSTSFIHLRVHTEFSLVDGLVKIKGLLGTTEFMSMPAVAITDENNLCGFVRFYKGAMEKG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G DV +  + +     R  LL  +N GY  +  ++SK Y      GR  I+ EW+
Sbjct: 61   IKPICGADVVVAEDDDVDSRYRFTLLATSNKGYKNIIAIISKGYQLGQVEGRPIIQREWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E   + + +IALSGA  GDIG  +Q GR++ A+N    W  IFP+ FY+E+QR  +P   
Sbjct: 121  ET--HSEDVIALSGAGFGDIGYLLQKGRHEQAKNRLAHWMSIFPNRFYVELQRTSRPGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   + +A  ++ P+VAT+ ++FLK+  F AHE R CI +G  L + +R +++++EQ 
Sbjct: 179  SYIHAVVPLAGELDCPVVATNDVRFLKRENFEAHEARVCIHDGVTLDDPRRKRRYSEEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FKT  EM +LF DIP A++NT+EIAKRC++ +  G+  LP +P P+ + + +F    S  
Sbjct: 239  FKTPEEMAELFQDIPEALENTVEIAKRCSVDVLLGEYFLPDYPVPEGMTMEEFFSKLSYD 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL +R  N        + EK R  Y  RL FE+  I +M F GYFLIV DFIQWAK+N I
Sbjct: 299  GLIERF-NFLTKKYGERIEKRRQEYWDRLDFELTIINQMGFPGYFLIVMDFIQWAKDNDI 357

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RDRVI 
Sbjct: 358  PVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDRVID 417

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV   YG+DAVSQI+TFG MAAK  +RDV RV    YS  D +SKLIPF+ G  +TL  A
Sbjct: 418  YVSRTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIG--MTLKKA 475

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            ++EEP L E +  +E+  +++E+A  +EG++RN G HAGGV+IAP+KLI+F PLY +E  
Sbjct: 476  LEEEPALPEFLAGDEDAAEVMEMAISLEGVVRNFGKHAGGVVIAPTKLIDFAPLYCEEDG 535

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKIN--TKTTNFSLNKLPLNDK 596
            +G+++QYDK+D+EE GL+KFDFLGL TL+++D  +  I  IN         ++ + L D+
Sbjct: 536  SGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWAVKNIDAINELEGKPPLDISLIDLEDR 595

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRR 654
             TY+LLK+A T AVFQLES+GMK ++K+  P  FE+IIAL++LYRPGP+   ++ +F  R
Sbjct: 596  STYDLLKRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLGSGMVDDFINR 655

Query: 655  KHGE---YFNYPDPRTKD---VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG     F +PD + +D   VL  TYGI++YQEQVMQIAQ+L  +SLG ADLLRRA+GK
Sbjct: 656  KHGRAELAFPHPDYQHQDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGGADLLRRAMGK 715

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK   M E R  F  GA+K  + K  +  IF+ +EKFAGYGFNKSH+ AYAL+SY TA+L
Sbjct: 716  KKPEVMAEQRLIFMEGALKNNIDKDLSGNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWL 775

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+KI I +++  ++  L++  PN+N S + F   +   G  
Sbjct: 776  KNHYPAPFMAAVLSADMQNTDKIVIFIEEC-RSMKLALELPNVNESVFKF--TVNPKG-- 830

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
              I YGLGAIKG G+  I+AIV  RK G F ++FDF +R+ +K +N+R++ +L+ SGAFD
Sbjct: 831  -AIVYGLGAIKGVGEGPIDAIVEARKDGPFEHIFDFCQRVGRK-VNKRVMEALVRSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKFINQ----LSLFKNDDNNNLKEYLNYVKVP-SWSK 943
                 R  L A ID ALK A +  K  NQ    + LF      N ++    + +   W  
Sbjct: 889  TIGPNRATLFACIDEALKRAVQDAK--NQDAGMMDLFGITVEENTEDAYREIGIQHEWPP 946

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT--VSGIITELKL-KT 1000
            +Q L  EK  LG  ++ H    YE EIR+F+   + +L+P    T  ++G+I +L++ K+
Sbjct: 947  RQRLDGEKDTLGLYVTGHPIDEYEKEIRRFVRSKIVDLQPKRGDTQVMAGLIVDLRITKS 1006

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
               G I  + +DD S  +EV +    Y+  K+++ ++E++IV G++  D F    ++ A 
Sbjct: 1007 KKGGNIAFVTLDDRSARIEVTVFPDNYDTFKDVIVKDEVVIVEGEITVDEFRGGQKVIAR 1066

Query: 1061 KIFDINVARILYGKKFSVMFNR----TFNISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
             I DI  ARI Y +   + +         I  L   +  ++  +G   V+ +   ++   
Sbjct: 1067 NILDIAQARIRYVEALRITWTSETVTPTEIQTLANYMESYR-GDGCDVVIGFDTPQACG- 1124

Query: 1117 EMKFPLNYKVQPIDDL 1132
            +++    +KV+P D+L
Sbjct: 1125 DIRLGSGWKVRPDDEL 1140


>gi|410642023|ref|ZP_11352541.1| DNA polymerase III subunit alpha [Glaciecola chathamensis S18K6]
 gi|410647265|ref|ZP_11357700.1| DNA polymerase III subunit alpha [Glaciecola agarilytica NO2]
 gi|410133120|dbj|GAC06099.1| DNA polymerase III subunit alpha [Glaciecola agarilytica NO2]
 gi|410138340|dbj|GAC10728.1| DNA polymerase III subunit alpha [Glaciecola chathamensis S18K6]
          Length = 1155

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1150 (43%), Positives = 725/1150 (63%), Gaps = 30/1150 (2%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLR+HS+YS++DGL ++  +I    +   PA+A+TD  N+ G++KFY+ A+  GIKP
Sbjct: 5    KFVHLRVHSDYSMLDGLNKVKPLISQVKSLNMPAVALTDQMNMCGLVKFYEQAHANGIKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IIG D W+ +        RL LL  NN GY  +  L+SKAY+      +A I  EWL + 
Sbjct: 65   IIGTDFWVQSSALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAVIDQEWLAE- 123

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
             + +G+I LSG  +GD+G+ +  G   +AE     + + FPD FY+E+ R  +      I
Sbjct: 124  -HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQEHFPDRFYLELTRTARVGEEDYI 182

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
             + +  A   NLP+VAT+ + F+    F AHE+R  I +G  L++ +R K ++++Q  ++
Sbjct: 183  HRAVEWAGQHNLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLYSEQQYMRS 242

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EM +LF DIP AI+NT+EIAKRCN+ +  G   LP FPT  +++I DFL+  S+ GL+
Sbjct: 243  SEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPT-GDMSIADFLVKVSEEGLE 301

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            KRL  L+ D E    ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N IPVGPG
Sbjct: 302  KRLAFLFPDEEERLAKRPEYDERLKVELVVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG 361

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V + 
Sbjct: 362  RGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEM 421

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG+DAVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A +EEP
Sbjct: 422  YGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPG--MTLTKAFEEEP 479

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
            +L E    +EEV+ LI++A+ +EG+ RN G HAGGV+IAP K+ +F PLY  +     ++
Sbjct: 480  RLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPLYCDDEGKNPVT 539

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
            Q+DK+D+E  GL+KFDFLGL TL+I+   I  I   + K  +  +  +P++DK ++ LL+
Sbjct: 540  QFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIS--SGKGIDIDILAIPMDDKKSFKLLQ 597

Query: 604  KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYF 660
            ++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  
Sbjct: 598  RSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAI 657

Query: 661  NYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            +YPD        K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  EM 
Sbjct: 658  SYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAMGKKKPEEMA 717

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F+ GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + 
Sbjct: 718  KQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE 777

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  MD+T+KI  LV D  +  G+++LPP++N   Y F   ++S+G   +I YG+
Sbjct: 778  FMAAVMSADMDNTDKIVTLV-DECQRMGITLLPPDVNAGSYKF--TVDSEG---RIVYGI 831

Query: 836  GAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  I AI+  R+    FT+LFDF  ++D K IN+R++  L+ +GA D     R
Sbjct: 832  GAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLGPHR 891

Query: 895  YMLVASIDVALKNAEKTKKFIN--QLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              ++A++  A+  A++  K  +  Q  +F        +    +VKVP W +K  L  EK 
Sbjct: 892  ASIMATLPEAIAAADQHAKAESHGQSDMFGLLTTEPEQVEQAFVKVPPWPEKVWLDGEKD 951

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRGKIL-I 1008
             LG  L+ H    Y  EIR +    L +LKPT    VS   G++  +++ T  RG+   I
Sbjct: 952  TLGLYLTGHPINQYLQEIRHYCTGRLVDLKPTNKDVVSYAVGLVLGVRVMTNKRGRRWGI 1011

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            + +DD S  ++V     L+E+ + IL+ + +L+VSG+V  D F     I A    DI  A
Sbjct: 1012 VTLDDKSARIDVRFFPDLFEQYEEILQSDRILVVSGQVSFDEFSGGNTIGARDAMDIVQA 1071

Query: 1069 RILYGKKFSVMFNRTF-NISILKKI-LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKV 1126
            R    K  S+ F+ ++ N S L K+  +    + G   V  + ++   +  +     + V
Sbjct: 1072 REKNAKWLSMQFDSSWCNASTLAKLQAILTPYQGGSCPVQAHVVHPDAEVTLALGAQWYV 1131

Query: 1127 QPIDDLKLAL 1136
             P D L   L
Sbjct: 1132 TPEDQLLFEL 1141


>gi|109897589|ref|YP_660844.1| DNA polymerase III subunit alpha [Pseudoalteromonas atlantica T6c]
 gi|109699870|gb|ABG39790.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c]
          Length = 1155

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1150 (43%), Positives = 725/1150 (63%), Gaps = 30/1150 (2%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLR+HS+YS++DGL ++  +I    +   PA+A+TD  N+ G++KFY+ A++ GIKP
Sbjct: 5    KFVHLRVHSDYSMLDGLNKVKPLIAHVKSLNMPAVALTDQMNMCGLVKFYEQAHSNGIKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IIG D W+ ++       RL LL  NN GY  +  L+SKAY+      +A I  EWL   
Sbjct: 65   IIGTDFWVQSDALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAVIDQEWL--V 122

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++ +G+I LSG  +GD+G+ +  G   +AE     + + FPD FY+E+ R  +      I
Sbjct: 123  EHSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQQHFPDRFYLELTRTGRLGEEDYI 182

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
             + +  A   +LP+VAT+ + F+    F AHE+R  I +G  L++ +R K ++++Q  +T
Sbjct: 183  HRAVEWAGQHDLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLYSEQQYMRT 242

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EM +LF DIP AI+NT+EIAKRCN+ +  G   LP FPT  +++I DFL+  S+ GL+
Sbjct: 243  SEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPT-GDMSIADFLVKVSEEGLE 301

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            KRL  L+ D E    ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N IPVGPG
Sbjct: 302  KRLAFLFPDEEERLAKRPEYDERLKIELVVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG 361

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V + 
Sbjct: 362  RGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEM 421

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG+DAVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A +EEP
Sbjct: 422  YGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPG--MTLTKAFEEEP 479

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
            +L E    +EEV+ LI++A+ +EG+ RN G HAGGV+IAP K+ +F PLY  +     ++
Sbjct: 480  RLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPLYCDDEGKNPVT 539

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
            Q+DK+D+E  GL+KFDFLGL TL+I+   I  I     K  +  +  +P++DK ++ LL+
Sbjct: 540  QFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISA--GKGVDIDILAIPMDDKKSFKLLQ 597

Query: 604  KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYF 660
            ++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  
Sbjct: 598  RSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAI 657

Query: 661  NYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            +YPD        K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  EM 
Sbjct: 658  SYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAMGKKKPEEMA 717

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F+ GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + 
Sbjct: 718  KQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE 777

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  MD+T+KI  LV D  +  G+++LPP++N   Y F   ++S+G   +I YG+
Sbjct: 778  FMAAVMSADMDNTDKIVTLV-DECQRMGITLLPPDVNAGSYKF--TVDSEG---RIVYGI 831

Query: 836  GAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  I AI+  R+    FT+LFDF  ++D K IN+R++  L+ +GA D     R
Sbjct: 832  GAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLGPHR 891

Query: 895  YMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              ++A++  A+  A++  K     Q  +F        +    + KVP W++K  L  EK 
Sbjct: 892  ASIMATLPEAISAADQHAKAEAHGQSDMFGLLTTEPEQVEQAFAKVPHWAEKVWLDGEKV 951

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRGKIL-I 1008
             LG  L+ H    Y  EI+ +    L +LKPT+   VS   G++  +++ T  RG+   I
Sbjct: 952  TLGLYLTGHPINQYAQEIKHYCTGRLIDLKPTHKDVVSYAVGLVIGVRVMTNKRGRRWGI 1011

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            + +DD S  ++V     L+E+ + IL+ + +L+VSG+V  D F     I A    DI  A
Sbjct: 1012 VTLDDKSARIDVRFFPDLFEQYEEILQSDRILVVSGQVSFDEFSGGNTIGARDAMDIVQA 1071

Query: 1069 RILYGKKFSVMFNRTF-NISILKKI-LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKV 1126
            R    K  S+ F  ++ N S L K+  +    + G   V  + ++   +  +     + V
Sbjct: 1072 REKNAKWLSMQFESSWCNASTLAKLQAILAPYQGGSCPVQAHVVHPDAEVTLALGAQWYV 1131

Query: 1127 QPIDDLKLAL 1136
             P D L   L
Sbjct: 1132 TPEDQLLFEL 1141


>gi|383495054|ref|YP_005395743.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 798]
 gi|380461875|gb|AFD57278.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 798]
          Length = 1144

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1138 (43%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDHL 1126


>gi|224582079|ref|YP_002635877.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
 gi|224466606|gb|ACN44436.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
          Length = 1144

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1138 (43%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|254480316|ref|ZP_05093564.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
 gi|214039878|gb|EEB80537.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
          Length = 1135

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1137 (41%), Positives = 720/1137 (63%), Gaps = 35/1137 (3%)

Query: 36   PALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQ 95
            PA+A+TD+SN +G++K +KSA++ G++PI G D+ + +  + +K   L LL  N  GY  
Sbjct: 10   PAVAVTDVSNFYGLVKVHKSAFSAGVQPIFGTDLRVLDADDPEKSYPLCLLAMNQTGYHN 69

Query: 96   LCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENF 155
            L  L+S++Y E    G   ++  WLE+    +G+IALS    GD+G A+   ++++A   
Sbjct: 70   LTLLISRSYTEGQYLGVPYVQKAWLEECA--EGVIALSAGARGDVGQAIIGEKSELAVAR 127

Query: 156  ARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHE 215
            A+ W  ++P  FY+E+ R  +      +   +N+A+ +  P+VAT+ ++FL  +EF AHE
Sbjct: 128  AKYWMALYPQRFYLELHRTGREGDETHLHGAVNLAAQLQCPVVATNDVRFLDASEFEAHE 187

Query: 216  VRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFG 275
             R CI EG  L + +R + +T++Q  ++  EM +LF DIP A+ NT++IA+RCN+ LE G
Sbjct: 188  ARVCIGEGRTLDDPRRARSYTEQQYLRSPEEMTELFADIPEALANTVQIARRCNVVLELG 247

Query: 276  KPKLPKFPTPKNININDFLISKSKHGLKKRLLNLY-KDPEIYKCEKLRYKKRLQFEIETI 334
            KP LP +P P+ + +++F    S  GL  RL  L+    + +  ++ +Y++RL+FE+ETI
Sbjct: 248  KPYLPDYPVPEGMTMDEFFRQLSHDGLDARLEALFDSSADDFPAKQKQYRERLEFELETI 307

Query: 335  IKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFL 394
            I+M F GYFLIV DFI+WAK + IPVGPGRGSGA SLVAY++ ITD+DPL Y+LLFERFL
Sbjct: 308  IQMGFPGYFLIVMDFIRWAKQHDIPVGPGRGSGAGSLVAYAMEITDLDPLEYDLLFERFL 367

Query: 395  NPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLR 454
            NP R+SMPDFD+DFC + RD+VI YV D YG++AVSQI+TFGTMAAK  +RDV RV    
Sbjct: 368  NPERVSMPDFDVDFCMDKRDQVIDYVADTYGREAVSQIITFGTMAAKAVVRDVARVQGKS 427

Query: 455  YSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGM 514
            Y   D +SKLIPF+ G  +TL  A+++E  L E +  +E+ +++ ++A+Q+EG+ R VG 
Sbjct: 428  YGLADKLSKLIPFEVG--MTLEKALEQEEALKEFLAEDEQAQEIWDMAEQLEGVTRGVGK 485

Query: 515  HAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIY 574
            HAGGV+IAPSKL +F PL+  E  +G+++QYDK D+E+ GL+KFDFLGL TL+I+D  + 
Sbjct: 486  HAGGVVIAPSKLTDFSPLFCDESGSGLVTQYDKGDVEDAGLVKFDFLGLRTLTIIDWAVK 545

Query: 575  FIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEE 632
             I  +        L+  ++PL+D+ ++ LLK A T AVFQLES GMK++++  +PD FE+
Sbjct: 546  MINTVRDTDGQAPLDIMQIPLDDQPSFTLLKSAKTTAVFQLESSGMKDLIERLQPDCFED 605

Query: 633  IIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQV 684
            I+AL++L+RPGP+   ++ NF  RKHG E  ++PD +      K +L  TYGI++YQEQV
Sbjct: 606  IVALVALFRPGPLQSGMVDNFINRKHGREELSFPDAKWQHEWLKPILQPTYGIILYQEQV 665

Query: 685  MQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEK 744
            MQIAQ L GY+LG AD+LRRA+GKKK  EM + R  F+ GA   G+    A  IF+ +EK
Sbjct: 666  MQIAQELAGYTLGGADMLRRAMGKKKPEEMAKQRTIFEEGAKSKGVDSELAMRIFDLVEK 725

Query: 745  FAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGL 804
            FAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA +S  +D+T+KI + V D  K   L
Sbjct: 726  FAGYGFNKSHSAAYALVSYQTCWLKTHYPAPFMAAVMSSELDNTDKIVVFV-DECKRMKL 784

Query: 805  SILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFD 863
            S+  P++N  +Y F    + D     I YGLGAIKG G+  +E I+  R+  G FT+LFD
Sbjct: 785  SLKLPDVNEGQYMFTVNAQGD-----IIYGLGAIKGLGEGPVEIILATRETDGPFTDLFD 839

Query: 864  FTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK----FINQL- 918
            F  R D + +NR+ I +LI SGA D   E R++L+AS++ ALK AE++       I+ L 
Sbjct: 840  FCARTDPRKVNRKAIEALIRSGALDSLGETRWVLMASMEDALKAAEQSASNRDAGIDDLF 899

Query: 919  -SLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIY 977
              +  + +N     Y  + KV  W+ K+ L  E+  LG  ++ H    Y+ EIR+F P  
Sbjct: 900  GEVVPSQENGTEDVYAGFRKVRPWTDKERLGGERDTLGLYITGHPIDEYQVEIRKFAPKR 959

Query: 978  LSELKPTYSCT--VSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILK 1035
            + +++P       + G+I   +   T RG + ++ +DD+S  +EV + +++Y + + +L 
Sbjct: 960  IVDVRPDKQGNQLLVGLIMATRTMNTQRGTMAVLTLDDSSAQMEVTLFSEVYNQFRELLV 1019

Query: 1036 ENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN-RTFNISILKKI-- 1092
            ++ ++++ GKV +D       + A  +  I+ AR  Y  + ++  N   F+     ++  
Sbjct: 1020 KDTIVLIEGKVQQDDRSGKPVVRASGVRSIDEARQSYASRLTLRVNAERFDDHFTTRLEQ 1079

Query: 1093 LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL-KLALINLGLYNAIIEY 1148
            +L        P  + Y + +S +  +     ++V P D+L ++    LG     +EY
Sbjct: 1080 ILAGAAGGRCPVSIDY-LQQSNRARVHLSERWRVVPSDELIQILRDELGHEQVALEY 1135


>gi|88706741|ref|ZP_01104443.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71]
 gi|88699062|gb|EAQ96179.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71]
          Length = 1168

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/1068 (42%), Positives = 693/1068 (64%), Gaps = 31/1068 (2%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            +  F+HLR+HSEYS+ DGL+RI  +    A    PA+A+TD+ N +G+IKF+K+A N GI
Sbjct: 1    MSDFVHLRVHSEYSLSDGLVRIKALAARTAELGMPAIAVTDVCNFYGLIKFHKAAVNAGI 60

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            KPI G DVW+T  +++ +   L LLV N  GYL L  LLS+AY E   +    +  +W+ 
Sbjct: 61   KPIFGADVWVTESLKDDEAHPLCLLVMNATGYLNLTRLLSRAYREGQTHEGPRVLWDWVA 120

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            ++   +GL+ALS    G++G A+ N +  +A     R  +IFP  FY+E+ R  +     
Sbjct: 121  ESA--EGLLALSCGAAGEVGQALVNDKPAVARQRLERCLEIFPGRFYLELHRTGRVGDEE 178

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +   + +A     P+VAT+ ++F+  +EF AHE R CIAE  +L + +R +++++EQ  
Sbjct: 179  HVHAAVALAEQYACPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQRRYSEEQYL 238

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            ++  EM +LF DIP A++NT+ IA+RC++++E G+  LP +P P+ + ++ +    S  G
Sbjct: 239  RSVEEMQELFEDIPEALENTVAIARRCSMEIELGRVCLPDYPVPEGMTMDAYFRELSHRG 298

Query: 302  LKKRL--LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            L +RL  L +++       E+  Y+ RL FE++TII M F GYFLIV DFI+WAK   IP
Sbjct: 299  LDERLKTLQIHQRENAEDLER-DYRARLDFELDTIIDMGFPGYFLIVMDFIRWAKERGIP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY LSITD+DP+ Y LLFERFLNP R+SMPDFD+DFC E RD VI Y
Sbjct: 358  VGPGRGSGAGSLVAYCLSITDLDPMEYELLFERFLNPERVSMPDFDVDFCMERRDEVIDY 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG++AVSQI+TFGT+AAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A+
Sbjct: 418  VAETYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFEVG--MTLEKAL 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  L + ++++ E +++ ++A Q+EG+ RNVG HAGGV+IAPS+L +F  LY      
Sbjct: 476  EQEESLQQFLRDDSEAQEIWDMAVQLEGVTRNVGKHAGGVVIAPSELTDFSALYCDGEGA 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
            G+++Q+DK+D+E+ GL+KFDFLGL TL+I+D     I +I  +       +N++PL+D  
Sbjct: 536  GLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARNDEPPLDINQIPLDDPA 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            +++LL+ A T AVFQLES+GMK ++   +PD FE+IIAL++LYRPGP+   ++ NF  RK
Sbjct: 596  SFDLLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQIL GY+LG ADLLRRA+GKK
Sbjct: 656  HGREKVSYPDADYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  GA   G+    A ++F+ +EKFAGYGFNKSH+ AYAL+SY TA+LK
Sbjct: 716  KPEEMAKQRSVFAAGAASKGVDADLATKLFDLVEKFAGYGFNKSHSAAYALVSYQTAWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA +S  +D+T+KI + +++  +  GL++  P++N  +Y F     +  +  
Sbjct: 776  AHYPAAFMAAVMSSELDNTDKIVVFIEEC-RRMGLTVRLPDVNEGRYMF-----TVSEAG 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +  ++  R+  G F +LFDF  R D + +NR+ + +L+ SGAFD
Sbjct: 830  EIVYGLGAIKGLGEGPVSGLLESREADGPFRDLFDFCARTDPRKLNRKALEALVRSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKE---YLNYVKVPSWSK 943
                +R++L+A ID AL+ AE+    +    + LF      + ++   Y +   V  W+ 
Sbjct: 890  SLGTERWVLLAGIDDALRAAEQNAANRDAGMVDLFGETVEASQEQGDPYGSLRHVRPWTD 949

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY--SCTVSGIITELKLKTT 1001
            ++ L  E+  LG  ++ H     E E+R+F P  L++L+     +C V+G+I  ++   +
Sbjct: 950  RERLQGERDTLGLYVTGHPIDACEDELRRFAPQRLADLRTDSRGNCRVAGLILSMRAMKS 1009

Query: 1002 YRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049
             RG + + V+DD S  +E    +++Y++ + +L +++++I  G++ +D
Sbjct: 1010 ARGAMAVFVLDDRSARLEATAYSEVYQQYRELLVKDQIVIAEGRLSQD 1057


>gi|345429132|ref|YP_004822249.1| DNA polymerase III alpha subunit [Haemophilus parainfluenzae T3T1]
 gi|301155192|emb|CBW14656.1| DNA polymerase III alpha subunit [Haemophilus parainfluenzae T3T1]
          Length = 1159

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1169 (42%), Positives = 746/1169 (63%), Gaps = 45/1169 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+IDG++++  +++A A +   ALA+TD +N  G+++FY    + GIK
Sbjct: 5    PRFVHLRTHTDFSMIDGIVKVKPLVKACAANNMVALALTDFTNFCGVVRFYGETLSSGIK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE---NINYGRAEIRIEW 119
            PIIG DV + +E+  ++   L LL KNN GY  +  LLSKAY     ++ Y    I  EW
Sbjct: 65   PIIGADVHVKSELCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGYVDLPY----IDQEW 120

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L   ++++G+I LSG   GDI   +    +  AE+    + + FPD+FY+ + R  +P+ 
Sbjct: 121  L--IEHREGVIVLSGGTQGDIAKKLLKENSFEAESAVSFYQEFFPDHFYLSLSRTGRPDE 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K++T++Q
Sbjct: 179  ERYIQAALKLAEAHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDPKRPKRYTEQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF DIPSA++NT+ IA+RCN+ L  G+  LPKFPT  +++  D+L+ KSK
Sbjct: 239  YFRSEEEMCDLFSDIPSALENTVLIAQRCNVTLRLGEYFLPKFPT-GDLSTEDYLVMKSK 297

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 298  EGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK+IP  PG  +TL+ A 
Sbjct: 418  VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPPDPG--MTLAKAF 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+PS + +F PLY      
Sbjct: 476  EAEPQLQTAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITDFAPLYCDNEGL 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
              ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  IN + T        +  +PL+
Sbjct: 536  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINARLTREGKPLVDIAAIPLD 592

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D +++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF 
Sbjct: 593  DPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFI 652

Query: 653  RRKHG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+
Sbjct: 653  DRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAM 712

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 713  GKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTH+ + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  
Sbjct: 773  WLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINVGKHHF-----SVN 826

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            ++ +I YG+GAIKG G+  I+A++T R + G F +LFD   R+D K INRR   SLI SG
Sbjct: 827  ENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESLIMSG 886

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L  +++ ALK +++  K   + Q  +F      + +    Y   P +++
Sbjct: 887  AFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHEEVENAYAHTPPYTE 946

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
            KQ L  E++ LG  LS H    Y  E+  +    L +L P       TV+G++   +  T
Sbjct: 947  KQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQISTVAGLLVSTRFAT 1006

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T +G +I I  IDD S  +++ +  +  ++    L+++ +++VSG+V  D F   ++++ 
Sbjct: 1007 TKKGNRIGIATIDDRSGRLDLTLFGESLDQFGEKLQKDTVVVVSGQVSFDDFSGGLKMSV 1066

Query: 1060 EKIFDINVARILYGKKFSVMFN-RTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKY 1116
              +  ++ AR  Y K  ++  +    + S +KK+  +L       LP  +YY   K  + 
Sbjct: 1067 RDLMTLDEARSRYAKSLAISLSEEQISPSFIKKLKEMLEPVSGGTLPINVYYQSAKG-RA 1125

Query: 1117 EMKFPLNYKVQPIDDLKLALINLGLYNAI 1145
             ++  + + + P D++   L+NL   NA+
Sbjct: 1126 LLRLGIQWSITPTDEILTELVNLLGENAV 1154


>gi|374982231|ref|ZP_09723552.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium str. TN061786]
 gi|321222185|gb|EFX47257.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium str. TN061786]
          Length = 1144

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1138 (43%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|381157794|ref|ZP_09867027.1| DNA-directed DNA polymerase III PolC [Thiorhodovibrio sp. 970]
 gi|380879152|gb|EIC21243.1| DNA-directed DNA polymerase III PolC [Thiorhodovibrio sp. 970]
          Length = 1203

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1170 (41%), Positives = 726/1170 (62%), Gaps = 54/1170 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL LHSE+S++DGL+R   ++ AAA    PA+A+TDL+NLF +++FYK+A   G
Sbjct: 1    MEQSFVHLHLHSEFSLVDGLVRPKALVAAAAEAGMPAVAVTDLTNLFCLVRFYKAAMAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPI+G +  + +  +   P RL+LLV++  GY  L  L+S+AY+E  + G   I   WL
Sbjct: 61   VKPIVGSEFRVDDPADPAHPHRLVLLVQDLTGYRNLTRLISRAYLERQDTGFPRIDRAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             ++   +GLIALS    GD+G A+  G  + AE     W  +F D FY+E+ R  + + +
Sbjct: 121  TESA--EGLIALSAGQHGDVGQALVRGHREEAEQRLSDWLGLFGDRFYLEVMRTGRADED 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              ++  +++A+  ++P+VAT+ ++FLK  +F AHEVR CI EG  L + +R + ++ EQ 
Sbjct: 179  LYLEACVDLATAHSVPVVATNDVRFLKTEDFDAHEVRVCIHEGVTLEDPRRPRHYSAEQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T +EM +LF D+P A++N++EIAKRCNL+LE GK  LP  P P+   +NDF+   S+ 
Sbjct: 239  LRTPAEMAELFADLPEALENSLEIAKRCNLELELGKSYLPDSPLPEGRTVNDFIAEASRQ 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL  RL   +        E+ R Y +RL  E++ I  M F GYFLIV+DFIQWAK+  IP
Sbjct: 299  GLDWRLARTFDTQAPDFAERRRVYDERLDIELKVICDMGFPGYFLIVADFIQWAKDQGIP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DP+ ++LLFERFLNP R+SMPDFDIDFC E RD VI Y
Sbjct: 359  VGPGRGSGAGSLVAYALKITDLDPIEHDLLFERFLNPERVSMPDFDIDFCMERRDEVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V  +YG+DAVSQI+TFGTMAAK  +RDVGRVL   Y F D I+K++PF+    +TL  A+
Sbjct: 419  VARKYGRDAVSQIITFGTMAAKAVVRDVGRVLGQPYGFVDKIAKMVPFE--LKMTLDKAL 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
             E  +L      +E V  +I++A+++EG+ RN G HAGGV+IAP+KL +F PLY + G  
Sbjct: 477  VESEELKAAYAEDEAVTAIIDMARKLEGLARNAGKHAGGVVIAPTKLTDFAPLYCEPGGE 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
             +++Q+DKDD+E+ GL+KFDFLGL TL+I+D   + +K +N +          + ++   
Sbjct: 537  NLVTQFDKDDVEQAGLVKFDFLGLRTLTIID---WALKTVNARRAEQGEPPLEIERIDPY 593

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D+  + LLK+  T AVFQLES+GMK ++K+ +PD F +I AL++L+RPGP+   ++ +F 
Sbjct: 594  DEKAFALLKRCETTAVFQLESRGMKELIKKLQPDSFGDITALVALFRPGPLQSGMVDDFI 653

Query: 653  RRKHGE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
             RKHG     YP P  + +L  TYG+++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK 
Sbjct: 654  DRKHGRAAVAYPHPDLEPILKPTYGVILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKA 713

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM + R  F+ GA + G+    A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH
Sbjct: 714  EEMDKQRAIFEQGAAERGVDAGVATRIFDLMEKFAGYGFNKSHSAAYALVSYQTLWLKTH 773

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + FMAA LS  MD+T+K+  L+ D  +   LS+ PP IN S++ F     +     ++
Sbjct: 774  YPAAFMAAVLSADMDNTDKVVTLI-DECRAMQLSVEPPCINGSEWRF-----TTAGDARV 827

Query: 832  RYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
             YGLGAIKG G+S IE+I+  R    F +L+DF +RID + +NRR++ +LI +GA D   
Sbjct: 828  IYGLGAIKGVGESAIESILKVRDGRPFADLWDFCRRIDLRRVNRRVVEALIRAGALDKLG 887

Query: 892  EKRYMLVASIDVALKNAEKTKKFI----NQLSLFKNDDNNNLKE-YLNYVKVPSWSKKQE 946
            + R  L   + VALK AE+         N L     DD + + +  +   + P W + + 
Sbjct: 888  KNRATLFNQLPVALKLAEQAHASASSGQNDLFGMGGDDADAVPDPQIAADQWPEWDEDER 947

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC--------------TVSGI 992
            L+ EK+ LG  L+ H    YE+E+   +   ++ L                    TV G+
Sbjct: 948  LLGEKETLGLYLTGHPIDAYESELNAMVSRRIAGLLEGGQSFGFGEEGGARGEPRTVVGL 1007

Query: 993  ITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
            +  +++  T RG++  + +DD +  +E  + ++LYE+ + +L  + +L+VSG+V+ D+F 
Sbjct: 1008 VVAVRVNKTQRGRMASVTLDDRTGRIEATVFSELYEQTRELLVTDSILVVSGQVVFDQFR 1067

Query: 1053 KNIRINAEKIFDINVARILYGKKFSVMFN----------RTFNISILKKILLRFKCKNGL 1102
             +  + A  +  +  AR        +  +          +T  +  +  IL +F+  +GL
Sbjct: 1068 DSWSLRASAVRPLADARAELADHLHLTLDLAEPARHAQGQTL-VDNMIDILQQFR-GSGL 1125

Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
               ++Y        E++   ++++ P D+L
Sbjct: 1126 TVRVHYR-RPGATGELRLGEDWRIAPSDNL 1154


>gi|452747327|ref|ZP_21947124.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri NF13]
 gi|452008848|gb|EME01084.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri NF13]
          Length = 1173

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1185 (41%), Positives = 734/1185 (61%), Gaps = 50/1185 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+R+  +I+A A    PA+A+TD+SN+  ++KFYK+A   G
Sbjct: 1    MPVSFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKAAQGAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W+    E+   SRL LL  N  GY  L EL+S+ + E        I  +W+
Sbjct: 61   IKPICGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELVSRGWTEGQRNDLVIIERDWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +++   +GLIALSGA  G+IG+A+ NG   +AE     W  +FP+ FY+E+QR  + N  
Sbjct: 121  KQSS--EGLIALSGAKEGEIGLALLNGEESLAEALLAEWQSVFPERFYLEVQRTSRVNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A    +P+VAT+ ++FLK+ +F AHE R CI E   L +++R + ++ +Q 
Sbjct: 179  EHLHAAVALAERCAVPLVATNDVRFLKQDDFEAHETRVCIGESRTLDDSRRPRNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM +LF D+P A++NT+EIA+RCN++++ G   LP FP P  + ++D+    S  
Sbjct: 239  LKTPEEMYELFSDLPEALENTVEIARRCNIEVQLGTYFLPDFPVPDGMTMDDYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL++RL + L +D   Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +P
Sbjct: 299  GLEERLEVLLPRDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVP 358

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY   ITD+DPL+Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI Y
Sbjct: 359  VGPGRGSGAGSLVAYVQKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDY 418

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V ++YG++AVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 419  VAEKYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 476

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E  L + +  +E+ R++ ++A ++EGI R  G HAGGV+IAP+KL +F P+   +   
Sbjct: 477  EMEEPLRDFLAVDEDAREIWDMALRLEGITRGTGKHAGGVVIAPTKLTDFAPIACDDEGG 536

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
             +++Q+DKDD+E  GL+KFDFLGL TL+I+   +  I +   +       ++ +PL+DK 
Sbjct: 537  SLVTQFDKDDVESAGLVKFDFLGLRTLTIIKWALETINREQARKGLEPVDIDFIPLDDKP 596

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  RK
Sbjct: 597  TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656

Query: 656  HGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657  HGRAEISYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F  G    G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717  KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY S FMAA LS  M +T+K+  L+++  ++  L I  P++N S++ F   +  DG   
Sbjct: 777  AHYPSPFMAAVLSADMHNTDKVVTLIEEC-RSMKLRIDAPDVNNSEFKF--TVSDDG--- 830

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  +EAIV  R + G F +LFDF  R+D K IN+R + +LI  GA D
Sbjct: 831  RIIYGLGAIKGVGEGPVEAIVECRSEGGPFKDLFDFCSRVDLKRINKRTLEALIRGGALD 890

Query: 889  ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
                             ++ R +L+++++ A++ AE+T + ++   + LF          
Sbjct: 891  RMGPYFSDDPKLYQAGIDQNRAVLLSAMEEAIQAAEQTARSLDSGHMDLFGGLFAEPEAD 950

Query: 931  EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
             Y N+ K    + K+ L  EK  LG  L+ H    YE E+R+F    + +L+P     TV
Sbjct: 951  VYANHRKARELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIIDLRPARDTQTV 1010

Query: 990  SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
            +G+I  L++    +G K+  I +DD S  +E  +  + +   + +L+ + L++V G+V  
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAEAFNTAQALLQTDALVVVEGEVSN 1070

Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPF 1104
            D F   +R+ A+++  +  AR    +   V       R   +  L  +  R   +   P 
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRVKVGSDALRGDRVRWLADVCGRH--RGACPI 1128

Query: 1105 VLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             L Y      K  ++F  ++++ P D L  AL +  G  N  ++Y
Sbjct: 1129 TLEYT-GSDAKALLQFGESWRIDPADHLIQALRDQFGRDNVFLQY 1172


>gi|220934350|ref|YP_002513249.1| DNA polymerase III subunit alpha [Thioalkalivibrio sulfidophilus
            HL-EbGr7]
 gi|219995660|gb|ACL72262.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sulfidophilus
            HL-EbGr7]
          Length = 1162

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1162 (41%), Positives = 729/1162 (62%), Gaps = 46/1162 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL LH+E+S++DGL+R+  +++A      PA+A+TD  NLFG++KFYK+A   G
Sbjct: 1    MTTSFVHLHLHTEFSLVDGLVRVEPLVQAVREAGMPAVAVTDQGNLFGMVKFYKAALKAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIE-W 119
            IKPI+G D W++     + PSRL+LL ++ +GY  L  L+S++Y E    G A +    W
Sbjct: 61   IKPIVGVDTWVSAPQAGEAPSRLVLLAQDEDGYRNLTRLISRSYQEGQQSGDAPVLDRGW 120

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
             +      GLIALSG   G+IG A+   +   AE     W  +FP  FY+EI R  +   
Sbjct: 121  FDGASR--GLIALSGGREGEIGRALMGSQPSAAEELCEFWEGLFPGRFYLEIGRTGREGE 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   +++A + +LP+VAT+ ++FL  ++F AHE R CI +G +L + +R + +T +Q
Sbjct: 179  EDHLHAAVDLAQSRSLPVVATNDVRFLAASDFDAHEARVCIHDGRVLDDPRRPRDYTPQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              +T  EM  LF DIP A++N++EIA+RCN+ L  GK  LP++P P  +  +D+    S+
Sbjct: 239  YLRTAEEMAALFADIPEALENSVEIARRCNVSLTLGKSVLPEYPVPAGMTTDDYFRKASR 298

Query: 300  HGLKKRLLNLYKDPEIYKCEKLR-YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
             GL  RL  + +     +  K R Y++RL+ E++ I +M F GYFLIV+DFIQWAK+N+I
Sbjct: 299  EGLDARLAVILEGVTDNREAKERAYRERLEIELDVICQMGFPGYFLIVADFIQWAKDNAI 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC E RDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYALKITDLDPLLYDLLFERFLNPERVSMPDFDIDFCMEQRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV  RYG++ VSQI+T GTMAAK  +RDVGRVL   Y F D I+KLIPF+ G  +TL  A
Sbjct: 419  YVAQRYGREKVSQIITHGTMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFEIG--MTLDKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E +L    + +EEV  LI+LA+++EG+ RN G HAGGV+IAP++L +F PLY + G 
Sbjct: 477  LEQEEELRRLYEEDEEVSGLIDLARKLEGVARNAGKHAGGVVIAPTELTDFSPLYCEPGG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDK 596
              +++ +DKDD+E +GL+KFDFLGL TL+I+D  +  I  ++         +N++PL+D 
Sbjct: 537  QSVVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVRTIDQQRKAEGQAPLDVNRIPLDDP 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
            +T+ LLK+  T AVFQLES+GMK ++K  +PD FE+I+AL++LYRPGP+   ++ +F  R
Sbjct: 597  ETFGLLKRQETTAVFQLESRGMKELIKRLQPDVFEDIVALVALYRPGPLQSGMVDDFINR 656

Query: 655  KHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            KHG    +YP P  + +L  TYG+++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  E
Sbjct: 657  KHGRAKVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 716

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R+ F  GA   G+ +  A+ IF+ +EKFAGYGFNKSH+ AYALLSY TA+LK HY 
Sbjct: 717  MAKQREIFLAGATGRGVQEATASYIFDLMEKFAGYGFNKSHSAAYALLSYQTAWLKQHYP 776

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FM+A LS  MD T+K+  L+++  +   L ++PP+IN S++ F          + + Y
Sbjct: 777  AAFMSAVLSADMDHTDKVVNLIEEC-RAMELHVVPPDINRSQHRF-----GVADARTVIY 830

Query: 834  GLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+S I+A++  R+ G  F +L D   R D + INRR + +LI +GA D    
Sbjct: 831  GLGAIKGVGESAIQALIQAREAGGPFQSLDDLCVRADSQKINRRTLEALIRAGALDSIGP 890

Query: 893  KRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             R  L+A++  AL  AE+    + + Q  LF         + ++  ++P W +   L  E
Sbjct: 891  NRATLMANLPKALSRAEQHLRNESLGQEDLFGGPVTPGASD-VDDEQLPEWDEDLRLSAE 949

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSEL--------------KPTYSCTVSGIITEL 996
            K+ LG  L+ H    ++ E++      +++L              +     TV G++  +
Sbjct: 950  KETLGLYLTGHPIDRFQAELKAIHSKRIADLVAEVGDQTPGEGRRRKEQQATVGGLVINI 1009

Query: 997  KLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            + K T  G+I  + +DD S  +EV +  + + + +++L ++ LL+V G+   D F   +R
Sbjct: 1010 RTKPTQTGRIGFVTLDDRSGRIEVGLFGEDFNRYQHLLVKDRLLVVQGQAGVDEFNGGVR 1069

Query: 1057 INAEKIFDINVA--RILYGKKFSVMFNRTFN--ISILKKILLRFKCKNGLPFVLYYCINK 1112
            + A ++ D++ A  + + G    V+  R  N  +  LK  L   + +   P  ++Y   +
Sbjct: 1070 LRARQVMDLDEALSQCVKGLDLRVL-GRPVNGLVDELKDALAPSR-EGPCPVYIHY---R 1124

Query: 1113 SIKYEMKFPL--NYKVQPIDDL 1132
              +++  F L  +++V+P  DL
Sbjct: 1125 DDRFQACFELGEDWRVRPSGDL 1146


>gi|188533052|ref|YP_001906849.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
 gi|188028094|emb|CAO95951.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
          Length = 1160

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1151 (42%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++ AA    PA+ ITD +NL G++KFY +A+ +G+K
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTAPLVKYAAKMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + +++ +L  +N GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIIGADFNVNSEAMGDELTQITVLAADNQGYQNLTLLISRAYQRGYGPAGPTIDRDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +Q GLI LSG   GD+G  +  G +         + + FPD +Y+E+ R  +P+    
Sbjct: 124  --HQQGLILLSGGRRGDVGKMLLRGNHVQVNECLNFYQQHFPDRYYLELIRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   ++P+VAT+ + FL +++F AHE+R  I +G  L + KR ++++ +Q  +
Sbjct: 182  LHAAVELAVAQSVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPREYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIA+RCN+ +  G+  LP+FPT   +   DFL+ KSK GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPT-GEMTTEDFLVVKSKQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D +I    +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLTFLFPDEKIRAERRPAYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDEHGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K+    ++   +PL DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKSGEAPIDIAAIPLEDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK   
Sbjct: 659  EAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYQFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++++  ALK A++  K   I Q+ +F        +   +Y  V  W ++ +L  
Sbjct: 893  PHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPEQIQLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI +++    L ++ PT      T +G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +EV++     +K +++L+++ +LIVSG+V  D F   +++ A  + D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKFQHMLEKDRILIVSGQVSFDDFNGGLKMMARDMID 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++    +  ++G +P  LYY   +  +  ++F 
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDGQLLNRLRQSLEPYRSGTIPVHLYYQ-REDARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142


>gi|315633674|ref|ZP_07888964.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
            ATCC 33393]
 gi|315477716|gb|EFU68458.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
            ATCC 33393]
          Length = 1172

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1154 (42%), Positives = 727/1154 (62%), Gaps = 45/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+K
Sbjct: 18   PRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGVK 77

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + NE+  ++  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 78   PIIGADVLVQNELCGEERFRLTLLAKNNEGYKNITLLLSKAY----ERGYADVPYIDQQW 133

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 134  LVEHRA--GVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYHEFFPDHFYLTLTRTGRPDE 191

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               IQ  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 192  EHYIQAALELAEREQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKNYTSQQ 251

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LPKFPT  +++  D+L+ +++
Sbjct: 252  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPKFPT-GDLSTEDYLVKRAR 310

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+ RL  L+ D       +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 311  EGLEARLKVLFPDENERAARRAEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 370

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++
Sbjct: 371  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEH 430

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 431  VAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 488

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 489  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 548

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       +N +PL+D  
Sbjct: 549  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDINTIPLDDHQ 608

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ +L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 609  SFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 668

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 669  HGREEVSYPDANYQHETLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 728

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 729  KPEEMAKQRSVFEEGAIKNGIDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 788

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 789  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENG 842

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 843  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 902

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q  +F      N +   +Y  +  W++K  
Sbjct: 903  KLGPHRAALQQNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPWTEKTI 962

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 963  LDGERETLGLYLSSHPVSRYLKELSHYSPMRLKELTPNYRGQMSTASGLVVNTRIAVTKK 1022

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  +K    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1023 GNHIGIATIDDRSGRLDLTLFGEALDKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1082

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N LP  +YY   +  + 
Sbjct: 1083 MTIDEARARYAKSLAICLSQE---QITPQFIKKFKHILQPYSSNSLPVHIYYQSPQG-RA 1138

Query: 1117 EMKFPLNYKVQPID 1130
             +K  + + V P D
Sbjct: 1139 LVKMGVQWSVNPTD 1152


>gi|386389575|ref|ZP_10074389.1| DNA polymerase III, alpha subunit [Haemophilus paraphrohaemolyticus
            HK411]
 gi|385695345|gb|EIG25907.1| DNA polymerase III, alpha subunit [Haemophilus paraphrohaemolyticus
            HK411]
          Length = 1157

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1166 (42%), Positives = 744/1166 (63%), Gaps = 47/1166 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M+P+F+HL++HS++S+I+GL ++  +++ A  D   A+A+TD +N  G++KFY  A + G
Sbjct: 1    MLPRFVHLKVHSDFSMINGLAKVKPLVKTAVADNMVAMALTDFTNFCGLVKFYGEALSSG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI--- 117
            +KPIIG D+ +    E ++   L LL KNN GY  +  LLSKAY      G  ++ +   
Sbjct: 61   LKPIIGADILVRATPECEELDELTLLAKNNTGYHNITMLLSKAY----QQGYIDLPVVEK 116

Query: 118  EWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQP 177
            EWL   +  +G+I LSG   GD+G A+       AEN    + + FP++FY+ + R  + 
Sbjct: 117  EWL--TELNEGIIVLSGGRSGDVGKALLKENAKEAENLTAFYQQYFPEHFYLSLCRTGRA 174

Query: 178  NMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTK 237
            +    I+  +  AS  N+P+VA + + FLK  +F AHE+R  I +   L + KR KK++ 
Sbjct: 175  DEENYIKAAVPFASQHNIPLVAVNDVVFLKPDDFEAHEIRVAIHDSYTLDDPKRPKKYSA 234

Query: 238  EQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK 297
            +Q F+ + EM +LF DIPSA+ NT+EIAKRC++ +  G+  LP FPT   ++  D+L+ K
Sbjct: 235  QQYFRAEEEMCRLFADIPSALANTVEIAKRCSVTVRLGEYFLPNFPT-GELSTEDYLVQK 293

Query: 298  SKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
            S+ GL++RL  L+ D E  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K N 
Sbjct: 294  SREGLEERLEFLFPDEEERKSKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKENG 353

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            IPVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI
Sbjct: 354  IPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 413

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             +V D YG+ AVSQI+TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL  
Sbjct: 414  DHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLEK 471

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY-KQE 536
            A   EP+L E   ++EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY   E
Sbjct: 472  AFAAEPKLPELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSE 531

Query: 537  GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKL 591
            GM   ++ +DK+D+E  GL+KFDFLGL TL+I+    + ++ IN +          +  +
Sbjct: 532  GMHP-VTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALEMINARMEAEGKEPVRIESI 587

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIK 649
            PL+DK +++LL ++ T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++
Sbjct: 588  PLDDKKSFDLLLQSKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQ 647

Query: 650  NFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLR 703
            NF  RKHG E  +YPD +      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLR
Sbjct: 648  NFIDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLR 707

Query: 704  RAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSY 763
            RA+GKKK  EM   R+ F+ GAI  G+  + A +IF+ +EKFAGYGFNKSH+ AYAL+SY
Sbjct: 708  RAMGKKKPEEMAAQREIFEKGAINKGIDGNLAMKIFDLVEKFAGYGFNKSHSAAYALVSY 767

Query: 764  YTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIE 823
             T +LK H+ + FMAA +S  MD+T+KI + + D     GL+++PP+IN  K+ F     
Sbjct: 768  QTLWLKAHFPAEFMAAVMSSEMDNTDKI-VGLYDECMNMGLTVVPPDINSGKHRF----- 821

Query: 824  SDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLI 882
            S  +  +I YGLGAIKG G+  I+AI++ R+  G F +LFD T R+D K INRR  ++LI
Sbjct: 822  SVNEKGEIVYGLGAIKGVGEGPIDAILSARQQDGIFKDLFDLTARVDLKKINRRTFDALI 881

Query: 883  NSGAFDCFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPS 940
             SG+ D     R  L+ +++ ALK +++  K   + Q  +F        +    Y   P 
Sbjct: 882  MSGSLDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPK 941

Query: 941  WSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELK 997
            WS++  L  E+  LG  LS H    +  E+  + P+ L+EL+PT+   + TV+GI+   +
Sbjct: 942  WSEQTILDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTFRGQNATVAGIVVGYR 1001

Query: 998  LKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +  T RG +I I  I+D S  +++ + ++  E   +++++  ++I +G V  D F   ++
Sbjct: 1002 IAVTKRGSRIGIATIEDRSGKLDITLFSEALETYGDLIEKESIIIATGSVQFDDFSGGLK 1061

Query: 1057 INAEKIFDINVARILYGKKFSVMFNR-TFNISILKKILLRFKC-KNG-LPFVLYYCINKS 1113
            ++A +I  ++ AR    K  ++  N+   +   +K +    +  K G LP   YY   + 
Sbjct: 1062 MSAREIMTLDDARTHNAKSLALAINQEQLDAKFVKDLTACIEPYKEGTLPLHFYYQSEQG 1121

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINL 1139
             +  +K  + ++V P +++ + L  L
Sbjct: 1122 -RALLKGGVEWRVTPKEEMLVGLRTL 1146


>gi|375117668|ref|ZP_09762835.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. SD3246]
 gi|326621935|gb|EGE28280.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. SD3246]
          Length = 1144

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1138 (43%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|161612604|ref|YP_001586569.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
 gi|161361968|gb|ABX65736.1| hypothetical protein SPAB_00295 [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
          Length = 1144

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1138 (43%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI +SG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK--EGLILISGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|114321000|ref|YP_742683.1| DNA polymerase III subunit alpha [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227394|gb|ABI57193.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1182

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1104 (43%), Positives = 703/1104 (63%), Gaps = 49/1104 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL +HSE+S+ DG+LRI ++++A A    PA+AITD  NLFG++KFYK+A   G+KPI
Sbjct: 7    FVHLNVHSEFSLSDGILRIPELVDAVAGQGMPAVAITDQGNLFGMVKFYKAALAAGVKPI 66

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEI-RIEWLEKN 123
            +G ++ + +E   +  S L LL ++ +GY  L  LLS +Y +        + +  WLE +
Sbjct: 67   VGAEIRVEDEEAERDHSALTLLCRDLDGYAALSRLLSLSYQQGRTVDDTPVVQRAWLEAD 126

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               +GLI LSG   GD+G A+  G    AE+ AR ++  FPD +++E+QR  +P     +
Sbjct: 127  --HEGLIVLSGGKDGDVGKALLAGNTRRAESLARWYAGHFPDAYFLELQRTGRPGDEDHL 184

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
               + +A+ + LP+VAT+ ++FL   ++ AHEVR CI +G  L + KR +++T +Q  ++
Sbjct: 185  HAAVALATELALPVVATNAVRFLAADDYDAHEVRVCIHDGYTLDDPKRPRRYTNQQYLRS 244

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
             +EM  LF D+P A++NT+EIA+RC+L L  G+  LP FP P+ + I +FL  ++  GL+
Sbjct: 245  PAEMGALFSDLPEALENTVEIARRCSLDLTLGENVLPDFPIPEGLTIEEFLHQEALRGLE 304

Query: 304  KRLLNL-YKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            +RL      + E  +  +  Y++RL +E+  I +M F GYFLIV+DFI+WAK + IPVGP
Sbjct: 305  QRLEERGLAEGETEEGVRETYRQRLDWELGIINQMGFPGYFLIVADFIRWAKEHDIPVGP 364

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L+ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC E RD VI+YV  
Sbjct: 365  GRGSGAGSLVAYALAITDLDPLRYDLLFERFLNPERVSMPDFDVDFCMEQRDEVIEYVAR 424

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            RYG++ VSQI T GTMAA+  +RDVGRVL   Y + D I+KL+PF+PG  + L+ A + E
Sbjct: 425  RYGREKVSQIATHGTMAARAVVRDVGRVLGHGYGYVDRIAKLVPFEPG--MQLTKAFELE 482

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L    + +EE   L+ +A ++EG+ RNVG HAGGV+IAP+ L +F PLY + G  G+ 
Sbjct: 483  PELKALYEKDEEAGPLLSMALKLEGLARNVGKHAGGVVIAPTALTDFSPLYCEPGGEGLA 542

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK--TTNFSLNKLPLNDKDTYN 600
            +QYDKDD+EE+GL+KFDFLGL TL+I+D T+  +  +  +   T   + ++PL+D+ T++
Sbjct: 543  TQYDKDDVEEVGLVKFDFLGLRTLTIIDWTVKAVNALREQRGETPLDIARIPLDDRATFD 602

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LLK+  T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ +F  RKHG 
Sbjct: 603  LLKRCQTTAVFQLESRGMKELIKRLQPDSFEDIIALVALFRPGPLQSGMVDDFIDRKHGR 662

Query: 659  -YFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
                YP P       + +L  TYG+++YQEQVMQIAQ L GYSLG ADLLRRA+GKKK +
Sbjct: 663  AQVAYPTPELHHDDLEPILKPTYGVILYQEQVMQIAQALAGYSLGAADLLRRAMGKKKAA 722

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R+ F  GA ++GLS+  A  IF+ +EKFAGYGFNKSH+ AYALLSY TA+LK HY
Sbjct: 723  EMAKQREIFLKGAQEHGLSEAHAGAIFDLMEKFAGYGFNKSHSAAYALLSYQTAWLKHHY 782

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMA+ LS  MD+T+K+ I +++  +  GL++ PP++N S Y F    E     + I 
Sbjct: 783  PAPFMASVLSSDMDNTDKVVIFIEE-CREMGLTVRPPDVNRSGYRFRAEDE-----QTII 836

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGA+KG G+S ++AI+ ER   G F +L D   R+D + +NRR++ +L  SG+ D   
Sbjct: 837  YGLGAVKGVGQSALDAIIEERDAHGPFKDLQDLCNRVDLRKVNRRVLEALCRSGSLDSLI 896

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFK-NDDNNNLKE----YLNYVKVPSWSKK 944
              R   +A +  AL  AE+  +     Q  LF    D   + E    + +  +   W + 
Sbjct: 897  PNRATGMAWLPEALAAAEQKTRNAAAGQEDLFGLPGDGAAVAEAEEPHFSTPEQAEWDEH 956

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEI-----RQFIPIYLSELKPTY-------------S 986
              L  EK+ LG  L+ H    YE E+     R+   +  +  +P               S
Sbjct: 957  DRLAAEKETLGLFLTGHPIDPYEAELSHLAERRIAQVLAAAGEPGEKPENGRGRRRNGPS 1016

Query: 987  CTVSGIITELKLKTTYR-GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
              V G++  L+ + T   G++  +V+DD +  +E ++  + YE+ + ++  + +L+V G 
Sbjct: 1017 VRVVGLVVSLRTRNTASGGRMASLVLDDRTARMEAMLFPEAYERLRGLIAVDRVLVVQGS 1076

Query: 1046 VLEDRFLKNIRINAEKIFDINVAR 1069
            +  D F    RI  E++ DIN AR
Sbjct: 1077 LDYDDFAGGWRITVEQLQDINDAR 1100


>gi|320540046|ref|ZP_08039702.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str.
            Tucson]
 gi|320029895|gb|EFW11918.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str.
            Tucson]
          Length = 1162

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1160 (43%), Positives = 742/1160 (63%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGVGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D+ + +++   + ++L +L  N+ GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADLHVQSDVLGDELAQLTVLATNSAGYQNLTLLISRAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GL+ LSGA  GD+G  +  G     E     + + FPD +Y+E+ R  +P+    
Sbjct: 122  IEHREGLLLLSGARHGDVGKFLLRGNQPQVEQCLDFYQQYFPDCYYLELIRTGRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL++ +F AHE+R  I EG  L + KR + ++ +Q  +
Sbjct: 182  LHAAVTLATERGLPVVATNDVRFLEEDDFDAHEIRVAIHEGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL
Sbjct: 242  SEDDMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDMTTEDFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLTFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNHVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVSE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D I+KL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TLSI+D  +  I     K+      +  +PLNDK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLSIIDWALEMINARCAKSGEPPIDIAAIPLNDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKLRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN  +Y F   + ++G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWRM-GLKILPPDINSGQYRFH--VNNEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGA D 
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGALDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ S+  ALK A++  K   I Q+ +F        +   +Y  VP W ++  L
Sbjct: 893  LGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLSEAPEQVEQSYANVPRWQEQVVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++  +  EK +++L+++ +LI +G+V  D F   +++ A ++
Sbjct: 1013 GNRIGICTLDDRSGRLEVMLFTEALEKYQHLLEKDRILIATGQVSFDDFSGGLKMMAREV 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  +  ++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDAQARLR 1131

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1132 FGATWRVTPTDRLLIDLRTL 1151


>gi|429120924|ref|ZP_19181579.1| DNA polymerase III alpha subunit [Cronobacter sakazakii 680]
 gi|426324554|emb|CCK12316.1| DNA polymerase III alpha subunit [Cronobacter sakazakii 680]
          Length = 1144

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1138 (43%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PA AITD +NL G++KFY  A+  GIKPIIG D  +  E+
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGIKPIIGADFNMQCEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
                 S + +L  NN GY  L  L+S+AY          I  +WL +    +GLI LSG 
Sbjct: 61   LGDDFSHITVLAANNTGYQNLTLLISRAYQRGYGAAGPWIDQQWLAE--LGEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              GD+G  +  G N +AE     + + FPD +Y+E+ R  +P+    +   + +A    +
Sbjct: 119  RQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVRTGRPDEERYLHAAVALAEEKGV 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F++  +F AHE+R  I +G  L + KR + ++ +Q  +T+ EM +LF D+P
Sbjct: 179  PVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYLRTEEEMCELFSDLP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++N++EIA+RCN+ +  G+  LPKFPT  ++   DFL+ KSK GL++RL  L+ DPE+
Sbjct: 239  EALENSVEIARRCNVTVRLGEYFLPKFPT-GDMTTEDFLVMKSKEGLEERLEFLFPDPEV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
               ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RAQKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E    +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLQEIYDADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK+D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEMGHHPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I  ++         +  +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINARRAKQGLEPIDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPD-----P 665
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD      
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIQWQHE 655

Query: 666  RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F++GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSIFEDGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
               G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KNNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTDKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G+I   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     EK +++L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPNDRL 1126


>gi|372276090|ref|ZP_09512126.1| DNA polymerase III subunit alpha [Pantoea sp. SL1_M5]
          Length = 1160

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1155 (43%), Positives = 734/1155 (63%), Gaps = 41/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +I+ AA    PA+AITD +NL G++KFY  A++ GIK
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D  + +E+   + ++L +L  +N GY  L  L+S+AY          I  +WL  
Sbjct: 64   PVIGADFNVASELMGDELTQLTVLASSNTGYQNLTLLISRAYQRGYGVDGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             + Q+GLI LSG   GD+G ++  G N +       + + FPD +Y+E+ R  + +    
Sbjct: 122  IELQEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLELIRTGRQDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + F+   +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVVKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKL-RYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            ++RL  L+ D E  + EK   Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVG
Sbjct: 301  EERLEFLFPD-EAERLEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V 
Sbjct: 360  PGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            D YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   
Sbjct: 420  DMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFIA 477

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EPQL      +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     
Sbjct: 478  EPQLPAIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEHGQFP 537

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN-----KLPLNDK 596
            ++Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK
Sbjct: 538  VTQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLEPIDIASIPLDDK 594

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             ++++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  R
Sbjct: 595  KSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654

Query: 655  KHG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GK
Sbjct: 655  KHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +L
Sbjct: 715  KKPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +   G  
Sbjct: 775  KAHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYQFH--VNDAG-- 829

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAF
Sbjct: 830  -EIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAF 888

Query: 888  DCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQ 945
            D     R  L++S+  ALK A++  K   I Q  +F        +   +Y  V  W ++ 
Sbjct: 889  DRLGPHRAALMSSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPEQV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTT 1001
            +L  E++ LG  L+ H    Y  EI +++  + L ++ PT        +G++   ++  T
Sbjct: 949  QLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVMVT 1008

Query: 1002 YRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A 
Sbjct: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAR 1068

Query: 1061 KIFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYE 1117
            ++ DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + +
Sbjct: 1069 EVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAK 1127

Query: 1118 MKFPLNYKVQPIDDL 1132
            ++F   +++ P D L
Sbjct: 1128 LRFGAAWRISPSDRL 1142


>gi|284008505|emb|CBA75016.1| DNA polymerase III subunit alpha [Arsenophonus nasoniae]
          Length = 1160

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1158 (43%), Positives = 744/1158 (64%), Gaps = 33/1158 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YSIIDGL +IN ++   A    PALAITD +NL+G+IKFY +A+ +GIK
Sbjct: 4    PRFIHLRVHSDYSIIDGLAKINPLVNRVAELGMPALAITDFTNLYGLIKFYGAAHAEGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E+   + + L +L ++N GY  L  L+S AY +        I+ EWL  
Sbjct: 64   PIIGADFYLESELLGDEVAHLTILARDNKGYHNLTLLISAAYQKGYGAIGPTIKREWLVT 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GL+ LSG  LGD+G  +  G   + E     +   FP+N+Y+E+ R  +P+    
Sbjct: 124  HK--EGLLLLSGGCLGDVGKFLLRGNQQLVEQCLDFYQTHFPNNYYLELVRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   +P+VAT+ ++F+   +F AHE+R  I +G  L++ KR K ++ +Q  +
Sbjct: 182  LHAAVQLAAEKGVPVVATNNVRFINSDDFAAHEIRVAIHDGFTLADQKRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM++LF DIP A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFLI  +K GL
Sbjct: 242  SEQEMVELFADIPEALENSVEIAKRCNVMMRLGEYFLPQFPT-GDMATEDFLIKCAKAGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  LY + +     ++ Y +RL  E+  I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLQFLYPNEKERAERRIEYDERLDTELRVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAQ 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D I+KL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPSDPG--MTLEKAFVVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDPEGQNPL 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+   +  I +   K       +  +PL D+  ++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIISWALDMINQRRAKQNLAPIDIATIPLTDQKCFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++A T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        + VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDVEWQHASLQTVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+      +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAQQRSIFEAGAVKNGIDGELGMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +   G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVSLVDECWR-MGLKVLPPDINSGLYHFH--VNDRG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F  +FD   R+D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIESRQKGGYFKEIFDLCARVDTKKLNRRVMEKLIMSGAFDHLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S++ ALK A++  K   I Q  +F        +   +Y  V  W +   L  
Sbjct: 893  PHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVEQSYASVAKWPEHLILEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y +EI ++   + L ++ PT      TV G+    K+ TT RG 
Sbjct: 953  ERETLGLYLTGHPITAYLSEIERYTSGLRLKDVNPTPRGQMSTVVGLALTAKVVTTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +++++ +   EK +++L+++++LI +G+V  D F    +++  ++ D
Sbjct: 1013 RIGICTLDDRSGRLDIMLFSDALEKYQHLLEKDKILIATGQVSFDEFNGGNKMSVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            ++ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   K  + ++K  
Sbjct: 1073 LSEARAKYARSIAISLTDRQIDDQLLNRLRSTLEPYRSGTIPVNLYYQ-KKDARAKLKLG 1131

Query: 1122 LNYKVQPIDDLKLALINL 1139
            + ++V P D+L + L  L
Sbjct: 1132 VTWRVTPTDNLLIELRTL 1149


>gi|15601899|ref|NP_244971.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. Pm70]
 gi|14194670|sp|Q9CPK3.1|DPO3A_PASMU RecName: Full=DNA polymerase III subunit alpha
 gi|12720237|gb|AAK02118.1| DnaE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1159

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1158 (42%), Positives = 733/1158 (63%), Gaps = 49/1158 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+I+G+ ++  +I+A  +++  A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PIIG DV + +E+   +P  L LL KNN GY  +  LLSKAY    +++ Y    +   W
Sbjct: 64   PIIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQDLPY----LDQAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++  +G+I LSG H GD+G  +  G     E+    +   FPD+FY+ + R  +   
Sbjct: 120  LAEHR--EGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSLSRTGRYEE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A    LP+VAT+ + FL + +F AHE+R  I +   L + KR K +T +Q
Sbjct: 178  ERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKRPKLYTNQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  DFL+ KSK
Sbjct: 238  YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDFLVKKSK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++ +  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct: 417  VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P  + +F PLY      
Sbjct: 475  AAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
              ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  INT+          +  +PL+
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINTRLAKEGKPPVDIATIPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  ++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF 
Sbjct: 592  DPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFI 651

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E   YPDP       K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+
Sbjct: 652  DRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAM 711

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM   R+ F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 712  GKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 771

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTHY + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S  
Sbjct: 772  WLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVAPPDINTGKHHF-----SVN 825

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            ++ +I YG+GAIKG G+  IEA+++ R + G F +LFD   R+D K INRR   SLI SG
Sbjct: 826  EYGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSG 885

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L  +++ ALK +++  K   + Q  +F     ++      Y   P WS+
Sbjct: 886  AFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRWSE 945

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
            K  L  E++ LG  LS H    Y  E+  +    L +L P       TVSG++   +   
Sbjct: 946  KVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAV 1005

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T +G ++ I  +DD S  +++ +  +  +K  + L+++ ++IVSG+V  D F   ++++ 
Sbjct: 1006 TKKGNRLGIATLDDRSGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSV 1065

Query: 1060 EKIFDINVARILYGKKFSVMFNR-----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
             ++  ++ AR  Y K  ++  +      TF I  LK +L  +     LP  +YY  + + 
Sbjct: 1066 RELMSLDEARSRYAKSLAICLSEENMKPTF-IRELKALLTPYSGGT-LPIYVYYA-STAG 1122

Query: 1115 KYEMKFPLNYKVQPIDDL 1132
            +  +K  + + V P D L
Sbjct: 1123 QCRVKMGVQWSVNPTDQL 1140


>gi|212557746|gb|ACJ30200.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3]
          Length = 1156

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1164 (42%), Positives = 720/1164 (61%), Gaps = 36/1164 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HS++S+ DGL ++  ++   +    PA+A+TD +N+ G++KFY   +  GIK
Sbjct: 4    PLFVHLRVHSDFSMSDGLSKVKPILAKVSELGMPAVALTDQTNMCGLVKFYGGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG + W+     ++  S +  +  NN GY  L  L+S AY+      RA I  EWL K
Sbjct: 64   PIIGTEFWVQVPGVDELCS-ITAIAMNNEGYSSLTLLISDAYLRGHIDDRAVIDHEWLAK 122

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y DGLI LSG   GD+G A+        ++    +   FPD +Y+E+ R  +P+    
Sbjct: 123  --YNDGLILLSGGRHGDVGRALLKDNKAQVDSLIEFYQTHFPDRYYLELLRTGRPDEERY 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + F K  +F AHE+R  I++G  L++ +R KK++ +Q FK
Sbjct: 181  LHMAVELAQAKDLPVVATNQVVFNKPEQFEAHEIRVAISDGFTLADPRRPKKYSDQQYFK 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF DIP AIQNT+EIAKRCN+ +   +  LP FPT  ++ I DFL+  S+ GL
Sbjct: 241  SSEEMCELFEDIPEAIQNTVEIAKRCNVTVRLNEYFLPNFPT-GDLTIEDFLVDVSEKGL 299

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N IP+GP
Sbjct: 300  EERLEFLFPDPEVRAEKRPEYDERLDIELKVINEMGFPGYFLIVMEFIQWGKDNDIPIGP 359

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD VI +V D
Sbjct: 360  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD 419

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRV    Y F D ISK+IP +PG  +TL+ A + E
Sbjct: 420  LYGRDAVSQIITFGTMAAKAVIRDVGRVQGHPYGFVDRISKMIPAEPG--MTLAKAFEVE 477

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E     EEV+ LI++ + +EG+ RN G HAGGV+IAP+K+ +F P+Y        +
Sbjct: 478  PALQESYDGSEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKITDFSPIYCDSEGLNPV 537

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +  +  K       +  + L D   + 
Sbjct: 538  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNAVKDKNGEDRVRIESISLTDPKCFK 597

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 598  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 657

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 658  EEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 717

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+IK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 718  EMAKQRGTFEEGSIKNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 777

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL ++PP++N   + F   ++ D     I 
Sbjct: 778  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLPLIPPDVNKGLFRF--TVDDD---LNIV 831

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GA+KG G+  +++I+  RK G FT+LFDF  RID K +NRR+I  LI +GA D    
Sbjct: 832  YGIGAVKGVGEGPVDSILEARKDGPFTDLFDFCARIDLKKLNRRVIEKLICAGALDNLGP 891

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             R  LVA++  A++ A++  K   I Q  +F   +N    +   +V    W  K  L  E
Sbjct: 892  HRAALVATLPEAIRAADQHAKAEAIGQHDMFGLLNNEPEDDKQQFVDCTPWPDKVWLEGE 951

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG-KI 1006
            +  LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG K+
Sbjct: 952  RDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATRVMMTKRGAKM 1011

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             ++ +DD S  +EV++  + +EK  ++L+++ +LI+ G+V  D F    R+ A  I D+ 
Sbjct: 1012 GLVTLDDKSARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMG 1071

Query: 1067 VARILYGKKFSVMFNRTFNISILKKILLRFKC-----KNGLPFVLYYCINKSIKYEMKFP 1121
             AR  +     V    T    +    L RF+      KNG   VL        + +    
Sbjct: 1072 EARSHFANAVEVDLQST---EVDGDWLNRFQAAVEPWKNGAVPVLINYAQPETRAQFALG 1128

Query: 1122 LNYKVQPIDDLKLALINLGLYNAI 1145
              ++V P DDL LAL +L   N +
Sbjct: 1129 DEWRVNPTDDLMLALESLTGSNKV 1152


>gi|289208654|ref|YP_003460720.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944285|gb|ADC71984.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix]
          Length = 1159

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1160 (40%), Positives = 707/1160 (60%), Gaps = 66/1160 (5%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HSEYS+IDGL+R+  ++ A A    PA+A+TD  NLFG++KFY++A  +G++
Sbjct: 8    PGFVHLRVHSEYSLIDGLVRLKPLVAAVAEKGMPAVAVTDHCNLFGLVKFYRAAIAQGVQ 67

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D+ + +   +   +R+ LL +N+ GY  L  L+S+A+ E    G   I  EWL+ 
Sbjct: 68   PIIGADLLVRDARADGSVARMTLLAQNDPGYRNLTRLISRAWQEGQEKGIPRIDAEWLDS 127

Query: 123  NKYQDGLIALSGAHLG----DIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178
                +GLIALSG   G      G+A     +D+A      W K FP  FY+E+ R ++P 
Sbjct: 128  AA--EGLIALSGGIDGLFVSGSGVARVLTHDDLAP-----WLKRFPGRFYLELTRTERPG 180

Query: 179  MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
                I+Q +  A    LP+VAT+ ++FLK  +F AHE R CI +G  L +  R +++++ 
Sbjct: 181  EEAWIEQALAAAEQFELPVVATNDVRFLKAEDFEAHEARVCIHDGTTLDDPSRPRRYSEH 240

Query: 239  QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
            Q   T  EM + F DIP A+ N++ IA+RC++ L  G+  LP FP P+   + D L   S
Sbjct: 241  QYLATPQEMTERFSDIPEALANSVAIARRCSVSLTLGESVLPDFPVPEGYTVEDHLRETS 300

Query: 299  KHGLKKRLLNLYKDPEIYK-CEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
              GL+ RL       E ++  E+  Y++RL+ E++ I +M F GYFLIV+DFIQWAK+N 
Sbjct: 301  AKGLEARL-------ERFQFAERSEYEERLKLELDVICQMGFPGYFLIVADFIQWAKDNG 353

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            IPVGPGRGSGA SLVAY L ITD+DPL Y LLFERFLNP R+SMPDFD+DFC E RD VI
Sbjct: 354  IPVGPGRGSGAGSLVAYVLGITDLDPLRYELLFERFLNPERVSMPDFDVDFCMEKRDDVI 413

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YV +RYG+D VSQI+T GTMAAK  +RD GRVL   Y F D I+KLIPF+ G  +TL  
Sbjct: 414  DYVAERYGRDKVSQIITHGTMAAKAVVRDCGRVLGYGYGFVDRIAKLIPFELG--MTLDK 471

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A+ E   L  +   +EEVR +I+LA+++EG+ RN G HAGGV+IAPS L +F PLY ++ 
Sbjct: 472  ALAESEDLKSQYDQDEEVRGIIDLARKLEGLTRNAGKHAGGVVIAPSALTDFSPLYCEDD 531

Query: 538  MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKD 597
               +++ +DKDD+E +GL+KFDFLGL TL+I+D  +  ++K++ + T   L+ +PL+D D
Sbjct: 532  GGSLVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVENVRKMDPE-TRIDLDAVPLDDPD 590

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            T+ LLK   T AVFQLES GMK++++  +PD FE+IIAL++LYRPGP+   ++ +F  RK
Sbjct: 591  TFKLLKAYQTTAVFQLESGGMKDLIRRLQPDSFEDIIALVALYRPGPLQSGMVDDFIDRK 650

Query: 656  HGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
            HG     YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  EM
Sbjct: 651  HGRAQVEYPHPDLEPILQPTYGVILYQEQVMQIAQVLANYTLGGADLLRRAMGKKKPEEM 710

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
             + R+ F  GA+  G+ +  A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY +
Sbjct: 711  AKQRQIFMEGALGRGVEEGTATYIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYPA 770

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA LS  MD+T+K+  L+++  +  GL +LPP++N S Y F     +      + YG
Sbjct: 771  PFMAAVLSADMDNTDKVVGLIEEC-RNMGLEVLPPDVNQSDYRF-----TCRDAGTVVYG 824

Query: 835  LGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGAIKG G+S IE ++  R   G F  L D  +R+D   +N+R++ +L+ +GA D     
Sbjct: 825  LGAIKGVGESAIETLLKARAVDGPFHGLIDLCQRVDLSKLNKRVLETLVRAGALDAIGAN 884

Query: 894  RYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            R  L+  I  A+  AE+T++   +  + LF +     + E      +P       L  EK
Sbjct: 885  RATLLNDIPTAVAAAEQTERNASLGVVDLFGDPAAAVVPESET---LPEMEDDDRLRGEK 941

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY-----------------SCTVSGIIT 994
            + LG  L+ H    Y  E+++      +EL+                    +  ++G++ 
Sbjct: 942  ETLGLYLTGHPVERYRAELKRLTGSTFAELEAKLEQRPDEGGQQGRRGRQETVRIAGLVV 1001

Query: 995  ELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKN 1054
             ++++ T  G++ I  +DD S   E+++ N  +   ++ L+ + LL+  G V  D +   
Sbjct: 1002 GVRVRNTQNGRMGIATLDDRSGRAEIVLFNDDFTTYRDRLEPDTLLVAEGTVALDDYAGG 1061

Query: 1055 IRINAEKIFDINVARILYGKKFSVMFN--RTFNISILKKILLRFK---CKNGLPFVLYYC 1109
            IR+ A  ++ ++ AR  + +   +     R   +  L+ ++   +   C+      ++ C
Sbjct: 1062 IRMRARAVYTLDEARAQWARALHLCLEGVRAEQVENLRGLMQEHRDGQCR------VHLC 1115

Query: 1110 INK-SIKYEMKFPLNYKVQP 1128
              +  ++ E+  P  + ++P
Sbjct: 1116 YRRDGLEAELSLPEGWAIRP 1135


>gi|88798272|ref|ZP_01113858.1| DNA polymerase III subunit alpha [Reinekea blandensis MED297]
 gi|88779048|gb|EAR10237.1| DNA polymerase III subunit alpha [Reinekea sp. MED297]
          Length = 1167

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1109 (43%), Positives = 709/1109 (63%), Gaps = 52/1109 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLRLH+EYS+ DG++RI D+I  A+    PA+A+TD+SN FG++KFY      GIKPI
Sbjct: 4    FVHLRLHTEYSLTDGIVRIKDLINRASELEFPAVAVTDISNFFGLVKFYNGCLGAGIKPI 63

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL-EKN 123
            +G D++I N  ++  P  + +L  N  GY  L EL+S  + +N  + RA  R+EWL EKN
Sbjct: 64   LGADLYIENPDDDNAPFLMTVLAMNETGYRNLTELISDGFQKNQKHDRAITRVEWLAEKN 123

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               +GLI LSGA LGD+G A+  G ND AE+  + W  +F D +Y+E+QR  +      +
Sbjct: 124  ---EGLIVLSGARLGDVGYALLRGNNDRAESLVQHWKSVFGDRYYLELQRTGRDQDESLV 180

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q  + +     +P+VAT+ + FL + +F AHE R CI +G  + + KR +++ +EQ  K+
Sbjct: 181  QGAVALGRKYGVPVVATNDVMFLTREDFEAHETRVCINDGVTIDDPKRPRRYAEEQYLKS 240

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EM +LF DIP A++N++ IA+RC+  ++ GK  LP +P P+ + ++D+    S  GL+
Sbjct: 241  SDEMTELFRDIPQALENSVLIAQRCSATVQLGKYFLPDYPVPEGLTMDDYFRQLSAEGLE 300

Query: 304  KRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            +RL  +  DP+    E+ R  Y  RL+FE++ II+M F GYFLIV DFI+W KNN +PVG
Sbjct: 301  RRL-AVALDPKQPDFEERRQQYFDRLKFELDIIIQMGFPGYFLIVMDFIRWGKNNGVPVG 359

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVA+ L ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC EGR+RVI YV 
Sbjct: 360  PGRGSGAGSLVAWVLDITDLDPIEYDLLFERFLNPERVSMPDFDVDFCMEGRERVINYVA 419

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            + YG+ AVSQIVTFGTMAAK  +RDV RV    +   D +SKLIP  PG  + L+ A+ E
Sbjct: 420  ETYGRQAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADKLSKLIPPDPG--MKLTKALDE 477

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
              +L E ++ +EE  ++ E+A ++EGI R  G HAGGV+IAP+KL +F PL  +E  TG+
Sbjct: 478  VAELKEFLEEDEEAAEIWEMALKLEGITRQTGKHAGGVVIAPTKLTDFSPLLCEEDGTGL 537

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDK 596
            ++QYDK+D+E  GL+KFDFLGL TL+I+D   + +K IN +          +  +PL+D 
Sbjct: 538  VTQYDKNDVEAAGLVKFDFLGLRTLTIID---WALKIINPRLEAQGKEPIDIAHIPLDDA 594

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             ++ LL++A T AVFQLES+GMK+++   +PD  E++IAL++L+RPGP+   ++ NF  R
Sbjct: 595  ASFELLQQAKTTAVFQLESRGMKDLVMRLQPDCLEDMIALVALFRPGPLQSGMVDNFINR 654

Query: 655  KHG-EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG E  +YPD + +      +L+ TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GK
Sbjct: 655  KHGREELSYPDSQYQHEWLEPILAPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGK 714

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F+ GAI  G+  + A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +L
Sbjct: 715  KKPEEMAKQRAIFEEGAIGKGVDGNLAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA +S  + +T K+ I V++  +   + +LPP++N   YYF     +  + 
Sbjct: 775  KTHYPAAFMAATMSSELQNTEKVVIFVEEC-RQINIDVLPPDVNAGDYYF-----TVNEQ 828

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAF 887
             +I YGLGAIKG G+  +EAIV  R+ G  F +LFDF +RID K +N+R I +LI +GA 
Sbjct: 829  DQIIYGLGAIKGVGEGPVEAIVNARRSGGPFKDLFDFCERIDPKKVNKRSIEALIKAGAL 888

Query: 888  DCFNEKRYMLVASIDVALKNAEKTKK-----FINQLSLFKNDDNNNLKEYLNYVKVPSWS 942
            D     R +++ +   A+K AE++        ++     + ++  ++  Y  Y  V   +
Sbjct: 889  DSIGPNRQLMLEATPDAVKTAEQSAANAAAGMMDMFGAIEAEETGDV--YEPYAHVREST 946

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS----------CTVSGI 992
             K  L  EK  LG  L+ H    +E E+RQ   + L EL  +             T++G+
Sbjct: 947  LKIRLAGEKDTLGLYLTGHPIDEFENEVRQVATLRLGELDGSAEELKRARRGNIKTLAGL 1006

Query: 993  ITELKLKTTYRGKILIIV-IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF 1051
            +  ++ + T RG  + IV +DD +  +E+ +   +Y + K+++  + +++V  +   D +
Sbjct: 1007 VMGVRTRQTQRGDTMAIVTLDDRTGRIEMTLFGDVYTEFKDLIVPDTVIVVEAEAGWDDY 1066

Query: 1052 LKNIRINAEKIFDINVAR--ILYGKKFSV 1078
                RI A++++ +  AR  ++ G +F V
Sbjct: 1067 NDRPRIRAQRVYTLVEARQALIKGIEFRV 1095


>gi|420545668|ref|ZP_15043747.1| DNA polymerase III subunit alpha [Yersinia pestis PY-01]
 gi|420605068|ref|ZP_15097055.1| DNA polymerase III subunit alpha [Yersinia pestis PY-12]
 gi|420689928|ref|ZP_15173385.1| DNA polymerase III subunit alpha [Yersinia pestis PY-52]
 gi|420729049|ref|ZP_15207297.1| DNA polymerase III subunit alpha [Yersinia pestis PY-60]
 gi|420744925|ref|ZP_15221502.1| DNA polymerase III subunit alpha [Yersinia pestis PY-64]
 gi|420783008|ref|ZP_15254690.1| DNA polymerase III subunit alpha [Yersinia pestis PY-89]
 gi|420841289|ref|ZP_15307119.1| DNA polymerase III subunit alpha [Yersinia pestis PY-101]
 gi|391429978|gb|EIQ91759.1| DNA polymerase III subunit alpha [Yersinia pestis PY-01]
 gi|391480400|gb|EIR37077.1| DNA polymerase III subunit alpha [Yersinia pestis PY-12]
 gi|391574291|gb|EIS21218.1| DNA polymerase III subunit alpha [Yersinia pestis PY-52]
 gi|391603606|gb|EIS46771.1| DNA polymerase III subunit alpha [Yersinia pestis PY-60]
 gi|391625580|gb|EIS66054.1| DNA polymerase III subunit alpha [Yersinia pestis PY-64]
 gi|391664003|gb|EIS99779.1| DNA polymerase III subunit alpha [Yersinia pestis PY-89]
 gi|391719061|gb|EIT49238.1| DNA polymerase III subunit alpha [Yersinia pestis PY-101]
          Length = 1133

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1131 (43%), Positives = 723/1131 (63%), Gaps = 33/1131 (2%)

Query: 30   AANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKN 89
            AA    PALAITD +NL G++KFY SA+  GIKPIIG D ++ +EI   + + L +L +N
Sbjct: 4    AAALGMPALAITDFTNLCGLVKFYGSAHGAGIKPIIGADFYVQSEILGDELAHLTVLARN 63

Query: 90   NNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRN 149
            N GY  L  L+S+AY          I  +WL K+K  +GLI LSG  +GD+G  +  G  
Sbjct: 64   NEGYQNLTLLISEAYQRGYGAAGPIIDRDWLIKHK--EGLILLSGGRMGDVGKFLLRGNQ 121

Query: 150  DIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKT 209
               +     + + FPD +Y+E+ R  +P+    +   + +A+   LP+VAT+ ++F+ ++
Sbjct: 122  VQVDQCLAFYQEHFPDCYYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDES 181

Query: 210  EFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCN 269
            +F AHE+R  I +G  L + KR K ++ +Q  + + +M +LF DIP A+ N++EIAKRCN
Sbjct: 182  DFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCN 241

Query: 270  LKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQF 329
            + +  G+  LP+FPT   ++  DFL+ K+K GL++RL  L+ DPE+   ++  Y +RL  
Sbjct: 242  VTIRLGEYFLPQFPT-GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDI 300

Query: 330  EIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLL 389
            E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+L ITDIDPL ++LL
Sbjct: 301  ELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLL 360

Query: 390  FERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGR 449
            FERFLNP R+SMPDFD+DFC E RD VI++V + YG+DAVSQI+TFGTMAAK  IRDVGR
Sbjct: 361  FERFLNPERVSMPDFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGR 420

Query: 450  VLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGII 509
            VL   Y F D ISKLIP  PG  +TL  A   EPQLAE  + +EEVR LI++A+++EG+ 
Sbjct: 421  VLGHPYGFVDRISKLIPLDPG--MTLEKAFAAEPQLAEIYEADEEVRALIDMARKLEGVT 478

Query: 510  RNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSIL 569
            RN G HAGGV+IAP+K+ +F PLY        ++Q+DK+D+E  GL+KFDFLGL TL+I+
Sbjct: 479  RNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTII 538

Query: 570  DKTIYFI--KKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKP 627
            +  +  I  ++  T      +  +PL DK ++++L+++ T AVFQLES+GMK+++K  KP
Sbjct: 539  NWALEMINARRAKTGLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKP 598

Query: 628  DYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPD-----PRTKDVLSETYGIMV 679
            D FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD        K VL  TYGI++
Sbjct: 599  DCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIIL 658

Query: 680  YQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIF 739
            YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  +EM + R  F++GA   G+    A +IF
Sbjct: 659  YQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIF 718

Query: 740  NEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAI 799
            + +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  MD+T+K+  LV +  
Sbjct: 719  DLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECW 778

Query: 800  KTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFF 858
            +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  IEAI+  RK  G+F
Sbjct: 779  RM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGPIEAILEARKEGGYF 832

Query: 859  TNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK--FIN 916
              LFD   R+D K +N+RI+  LI SGAFD     R  L++S+  ALK A++  K   I 
Sbjct: 833  KELFDLCARVDTKKLNKRILEKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIG 892

Query: 917  QLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFI-P 975
            Q+ +F    +   +   +Y  VP W ++  L  E++ LG  L+ H    Y  EI ++   
Sbjct: 893  QVDMFGVLADAPEQVEQSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGG 952

Query: 976  IYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNK 1031
            + L ++ PT      T  G++   ++  T RG +I I  +DD S  +EV++     EK +
Sbjct: 953  MRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALEKYQ 1012

Query: 1032 NILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNISILK 1090
            ++L+++ +LI +G+V  D F   +++ A ++ DI+ AR  Y    ++ + +R  +  +L 
Sbjct: 1013 HLLEKDRILIATGQVSFDDFSGGLKMTARELMDISEAREKYASGLAISLTDRQIDDQLLN 1072

Query: 1091 KILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
            ++    +      +P  LYY   +  +  ++F   ++V P D L + L  L
Sbjct: 1073 RLRQSLEPHRAGTIPVHLYYQ-REDARARLRFGATWRVTPTDRLLIDLRTL 1122


>gi|374999968|ref|ZP_09724309.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Infantis str. SARB27]
 gi|353078186|gb|EHB43945.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Infantis str. SARB27]
          Length = 1144

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1138 (43%), Positives = 721/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  ++  EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSIDEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|117921241|ref|YP_870433.1| DNA polymerase III subunit alpha [Shewanella sp. ANA-3]
 gi|117613573|gb|ABK49027.1| DNA polymerase III, alpha subunit [Shewanella sp. ANA-3]
          Length = 1158

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1158 (42%), Positives = 739/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +NL G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+     + +   L ++  NN+GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFDGEFCALTIIAMNNDGYQNLTQIISQAYLRGHVQGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSG   GD+G A+  G N   E+    + + F   +Y+E+ R  + +    
Sbjct: 122  VTYNEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRTDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F +HE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A++NT+EIAKRCN+ +   +  LP FPT  +++I D+L+  SK GL
Sbjct: 242  SEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDYLVDCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I K+  K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL+I+PP++N   + F   ++ D    +I 
Sbjct: 779  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLTIIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A+  A++  K   I Q  +F   N D  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFNRT-FNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  +     +  + +    S+L+ I       +NG +P V+ Y   ++ K + +  
Sbjct: 1071 ISEARSHFASALEIDLDASQLTPSVLESIEQSISPWRNGAVPVVINYSQAQA-KGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
             N++V P D+L  AL +L
Sbjct: 1130 ENWRVNPSDELVFALESL 1147


>gi|386590123|ref|YP_006086523.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. B182]
 gi|383797167|gb|AFH44249.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Heidelberg str. B182]
          Length = 1144

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1138 (43%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI +SG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK--EGLILISGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|332140484|ref|YP_004426222.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep
            ecotype']
 gi|327550506|gb|AEA97224.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep
            ecotype']
          Length = 1154

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1084 (45%), Positives = 690/1084 (63%), Gaps = 28/1084 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   FIHLR+HS++S++DGL ++  ++   A    PA+AITD  N+ G++KFY  A+N G
Sbjct: 1    MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D W+TNE    +P RL LL  NN GY  +  L+SKAY+      RA I   WL
Sbjct: 61   IKPIIGTDFWVTNEAFGDEPFRLTLLAMNNEGYKNITILISKAYLRGHLAHRAVIDQAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  + +G+I LSGA  GD+G+ +      + ++    +   FPD FY+E+ R  +    
Sbjct: 121  AE--HAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLELIRTGRQGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A    LP+VAT+ + F+ +  F AHE+R CI +G  L + +R K+++++Q 
Sbjct: 179  DYLHHAVELAEQRGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDNRRPKRYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM++LF DIP AI+NT+EIAKRCN+ +   +  LP+FPT   +   DFL+  S+ 
Sbjct: 239  LRTSEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPT-GGMTTEDFLVKVSEE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ D E+ K ++  Y  RL+ E+E I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG+ AVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL  A K
Sbjct: 418  AELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFK 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQL E  +++EEV+ LI++A+ +EG+ RN G HAGGV+IAP+ + +F PLY  +    
Sbjct: 476  AEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGNN 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             ++Q+DK+D+E  GL+KFDFLGL TL+I+   I  IK+   K  +  ++ +PL D  ++ 
Sbjct: 536  PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKE--GKNVDVDISAIPLEDPKSFR 593

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 594  TLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 653

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        +++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  
Sbjct: 654  EEISYPDAEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPE 713

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 714  EMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHY 773

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  G+ ILPP++N  KY F   ++S G   +I 
Sbjct: 774  PAEFMAAVMSADMDNTDKIVTLV-DECERMGIEILPPDLNAGKYKF--TVDSKG---RIV 827

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R+  G F +LFDF  ++D K +N+R++  L+ +GA D   
Sbjct: 828  YGIGAIKGVGEGPIEAIIEAREIQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAGAMDNLG 887

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+A++  AL  A +  K     Q  +F        +    +  VP W +K  L  
Sbjct: 888  PHRATLMATLPEALAAAGQHAKAESFGQSDMFGLLTTEPEEVQQAFADVPEWPEKVWLEG 947

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            EK  LG  L+ H    Y  E+R +    L +LKPT      +  G++  +++ T  RG +
Sbjct: 948  EKDTLGLYLTGHPINQYADELRYYTDGRLVDLKPTNKDQLASAVGLVLGVRVMTNKRGRR 1007

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
              I+ +DD S  ++V     +YE+ +++L+ + +L++ G+V  D F     I A  + DI
Sbjct: 1008 WAIVTLDDKSARMDVRFFPDMYEQFESLLETDRILLIKGQVSFDDFSGGNTITARDVMDI 1067

Query: 1066 NVAR 1069
              AR
Sbjct: 1068 VQAR 1071


>gi|254508656|ref|ZP_05120771.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio
            parahaemolyticus 16]
 gi|219548413|gb|EED25423.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio
            parahaemolyticus 16]
          Length = 1159

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1166 (42%), Positives = 727/1166 (62%), Gaps = 48/1166 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  GIK
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L +L  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFAMQSAAFGDELTKLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG A+  G    A+  A  +   F D FY+E+ R  + +    
Sbjct: 122  VELSEGLILLSGGKSGEIGKALLKGNQKTAQECAEFYQTHFADRFYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +  A    LP+VAT+ + FL +T F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALEFAEQFELPVVATNDVVFLDETLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVMKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL+ E+E I  M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPKVRAERRPEYDERLRIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K      ++  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAKEGKAPVAIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++   L +LPP+IN   Y F   ++ DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECLR-MKLKVLPPDINSGLYRFN--VDEDG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILESRNRDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDD-----NNNLKEYLN-YVKVPSWSKKQ 945
              R  ++AS+D A+K A +     +Q   F   D         +E  N Y KV  W +K 
Sbjct: 893  PHRAAMMASLDDAVKAASQH----HQAEAFGQSDLFGVLTEAPEEVENKYTKVAPWPEKV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTY 1002
             L  E+  LG  L+ H    Y  E+ ++    L +  PT    S TVSG++   ++ TT 
Sbjct: 949  WLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVSGLVIAARVMTTK 1008

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I ++ +DD S  +EV++ +   +K   +L+++++L+VSG+V  D F   ++++A +
Sbjct: 1009 RGTRIGLMTLDDRSGRMEVMLFSDALDKYAELLEQDKILVVSGQVSFDDFNGGLKMSARE 1068

Query: 1062 IFDINVARILYGKKFSVMFNRTFNISILKKILLRFK-----CKNGLPFVLYYCINKSIKY 1116
            + D+  AR  Y +  SV    +    I  +   RF       + G   V  Y      + 
Sbjct: 1069 VMDLGTAREKYARGLSVSIEES---QIDGQFFERFSKILEPHRAGTVPVHVYYQRSDARA 1125

Query: 1117 EMKFPLNYKVQP----IDDLKLALIN 1138
             +     ++V P    +DDLK  L N
Sbjct: 1126 RLTLGTEWRVTPSDALLDDLKQLLGN 1151


>gi|424047434|ref|ZP_17784993.1| DNA polymerase III subunit alpha [Vibrio cholerae HENC-03]
 gi|408883927|gb|EKM22690.1| DNA polymerase III subunit alpha [Vibrio cholerae HENC-03]
          Length = 1159

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1150 (42%), Positives = 731/1150 (63%), Gaps = 32/1150 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L LL  NN GY  L  L+SKAY+      +  +   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  G+IG A+  G   + ++    +++ FPD FY+E+ R  +P+    
Sbjct: 122  AELSEGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A  + LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LHFAIELAEEVELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  +          +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDAASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  +F    +   +    Y +VP+W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV  + +  N    ++   +L       +P  +YY      +  +    
Sbjct: 1073 GTAREKYARGLSVSIDASQINDKFFEQFTRILEPHKAGTVPVNVYYQ-RADARARLTLGT 1131

Query: 1123 NYKVQPIDDL 1132
             ++V P D L
Sbjct: 1132 EWRVTPTDTL 1141


>gi|269960606|ref|ZP_06174978.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3]
 gi|269834683|gb|EEZ88770.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3]
          Length = 1159

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1152 (42%), Positives = 733/1152 (63%), Gaps = 36/1152 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L LL  NN GY  L  L+SKAY+      +  +   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  G+IG A+  G   + ++    +++ FPD FY+E+ R  +P+    
Sbjct: 122  AELSEGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A  + LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LHFAIELAEEVELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTKTTN-FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  +  +   +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAPSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  +F    +   +    Y +VP+W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
              AR  Y +  SV       N  F      +IL   K    +P  +YY      +  +  
Sbjct: 1073 GTAREKYARGLSVSIDANQINDKF-FEQFTRILEPHKAGT-VPVNVYYQ-RADARARLTL 1129

Query: 1121 PLNYKVQPIDDL 1132
               ++V P D L
Sbjct: 1130 GTEWRVTPTDTL 1141


>gi|423138752|ref|ZP_17126390.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. houtenae
            str. ATCC BAA-1581]
 gi|379051306|gb|EHY69197.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. houtenae
            str. ATCC BAA-1581]
          Length = 1144

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1138 (43%), Positives = 720/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   K  DGLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVALK--DGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNLALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  ++  EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSIDEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|420038723|ref|ZP_14552367.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH14]
 gi|397404014|gb|EJJ95546.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae KPNIH14]
          Length = 1068

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1078 (45%), Positives = 705/1078 (65%), Gaps = 38/1078 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIK
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  +  ++   + + L +L  NN GY  L  L+S+AY     YG       W+++
Sbjct: 64   PIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISRAY--QRGYGALG---PWIDR 118

Query: 123  N---KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            N   ++Q+GLI LSG   GD+G+++  G   + E     + + FPD +++E+ R  + + 
Sbjct: 119  NWLVEHQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIRTGRQDE 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A    LP+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q
Sbjct: 179  EAYLHAAVALAEARGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              +++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK
Sbjct: 239  YMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSK 297

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ DPE     +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +P
Sbjct: 298  EGLEERLAFLFPDPEERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 418  VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAF 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EPQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E   
Sbjct: 476  EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGL 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKD 597
              ++Q+DK+D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK 
Sbjct: 536  HPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF---LKNIR 1056
            RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   LKN R
Sbjct: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKNDR 1067


>gi|453065488|gb|EMF06450.1| DNA polymerase III subunit alpha [Serratia marcescens VGH107]
          Length = 1162

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1160 (43%), Positives = 742/1160 (63%), Gaps = 35/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTAPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L  NN GY  L  L+S+AY          I  +WL  
Sbjct: 64   PIIGADFHVQSEELGDELAQLTVLASNNEGYQNLTLLISRAYQRGYGAAGPTIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSGA  GD+G  +  G     +     + + FPD +Y+E+ R  + +    
Sbjct: 122  IEHREGLILLSGARQGDVGKFLLRGNQAQVDQCLDFYQQHFPDCYYLELIRTGRQDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDMSTEDFLVLKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N++PVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  T      +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK   
Sbjct: 659  EEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPV 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRGGFEDGAKARGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER---KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            YG+GAIKG G+  IEAI+  R   + G+F +LFD   R D K +NRRI+  LI SGAFD 
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDR 892

Query: 890  FNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ S+  ALK A++  K   I Q+ +F        +   +Y  +  W ++  L
Sbjct: 893  LGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANIAPWPEQVVL 952

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
              E++ LG  L+ H    Y  EI ++     L ++ PT      T  G++   ++  T R
Sbjct: 953  DGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKR 1012

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  +DD S  +EV++  +  EK +++L+++ +LI SG+V  D F   +++ A ++
Sbjct: 1013 GNRIGICTLDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREV 1072

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMK 1119
             DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  + +++
Sbjct: 1073 MDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARAKLR 1131

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
            F   ++V P D L + L  L
Sbjct: 1132 FGATWRVTPTDRLLIDLRTL 1151


>gi|254225765|ref|ZP_04919370.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51]
 gi|125621671|gb|EAZ50000.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51]
          Length = 1164

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 9    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 69   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 127  VEHAEGLIVLSGGKRGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 186

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 187  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 246

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 247  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 306  EERLEFLFPDPEVRAKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 366  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 426  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 483

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 484  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 543

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 544  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 603

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 604  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 663

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 664  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 723

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 724  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 783

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 784  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 837

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 838  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 897

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 898  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKARLEG 957

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 958  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1017

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1018 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1077

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1078 GSAR----EKFA----RGLSISILQ 1094


>gi|90415809|ref|ZP_01223742.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC2207]
 gi|90332183|gb|EAS47380.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC2207]
          Length = 1132

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1134 (43%), Positives = 724/1134 (63%), Gaps = 58/1134 (5%)

Query: 36   PALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQ 95
            PA+A+TD +N F  +KFYK+    GIKPI+G D+ + +E     P++L+LLVK+  GY  
Sbjct: 2    PAVALTDFNNFFAAVKFYKATQGSGIKPILGTDLLVLDESGEGSPTQLVLLVKDQTGYAN 61

Query: 96   LCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENF 155
            L +L+SKAY +    G   I+  WL   ++ DGLIALSG   G+IG+A+ + R D A   
Sbjct: 62   LTKLISKAYQDGQRQGVPHIKKSWL--GEFSDGLIALSGGRSGEIGVALVSNRLDDAATA 119

Query: 156  ARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHE 215
               ++ +F D FY+E+QR  +P     +   +++A+  N P+VAT+ ++F+ K EF AHE
Sbjct: 120  LEEFTALFGDRFYLELQRTGRPEEEDYLHAAVDLAARYNCPVVATNDVRFISKDEFEAHE 179

Query: 216  VRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFG 275
             R CI EG  L + +R ++F+++Q  ++  EM++LF DIP A++N++EIA+RC++ +  G
Sbjct: 180  ARVCIHEGRALDDPRRERRFSEQQYLRSPEEMVELFSDIPEALENSVEIARRCSIDIRLG 239

Query: 276  KPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKD-----PEIYKCEKLRYKKRLQFE 330
            +  LP +P P+ + IN+F   +SK GL+ RL  LY       PEI K    RY +RL+FE
Sbjct: 240  EYFLPDYPIPEGMTINEFFTLESKKGLQNRLEVLYDTSAPDFPEIQK----RYMERLEFE 295

Query: 331  IETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLF 390
            ++ II+M F GYFLIV DFI WAK N IPVGPGRGSGA SLVAYSL ITD+DPL Y+LLF
Sbjct: 296  LKIIIQMEFPGYFLIVMDFIGWAKTNLIPVGPGRGSGAGSLVAYSLLITDLDPLEYDLLF 355

Query: 391  ERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRV 450
            ERFLNP R+SMPDFDIDFC EGRDRVI YV ++YG+DAVSQIVTFGTMAAK  +RDV RV
Sbjct: 356  ERFLNPERVSMPDFDIDFCMEGRDRVIAYVAEQYGRDAVSQIVTFGTMAAKAVVRDVARV 415

Query: 451  LDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIR 510
                Y   D +SKLIPF+ G  +TL  A+++E  L + +  ++E  ++  +A Q+EG+ R
Sbjct: 416  QGKSYGLADKLSKLIPFEVG--MTLEKAVEQEETLKQFLDEDDEAGEIWGMALQLEGVAR 473

Query: 511  NVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILD 570
            N G HAGGV+IAP+ + +F P+Y  E   G+++Q+DK+D+E+ GL+KFDFLGL TL+I+D
Sbjct: 474  NCGKHAGGVVIAPTLITDFSPIYCDETGAGVVTQFDKNDVEDAGLVKFDFLGLRTLTIID 533

Query: 571  KTIYFIKKINTKTTN-----FSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEA 625
               + ++ IN   +N       ++K+PL+D+ TY L+++A T AVFQLES+GMK ++K+ 
Sbjct: 534  ---WAVRMINADRSNIGEEPLEIDKIPLDDQPTYGLMQRAETTAVFQLESRGMKELIKKL 590

Query: 626  KPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGEY-FNYPDPR-----TKDVLSETYGI 677
             PD FE+IIAL++L+RPGP+   ++ +F  RK G    +YP  +      K  L  TYGI
Sbjct: 591  GPDRFEDIIALVALFRPGPLQSGMVDDFINRKKGRAEVSYPHSQYQHECLKPALEPTYGI 650

Query: 678  MVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANE 737
            ++YQEQVMQIAQ +GGY+LG ADLLRRA+GKK   EM + R+ F +GAI  G +K  A+ 
Sbjct: 651  ILYQEQVMQIAQEMGGYTLGGADLLRRAMGKKNADEMAKQRELFMDGAIGKGFTKELASN 710

Query: 738  IFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKD 797
            IF+ +EKFAGYGFNKSH+ AYAL++Y TA+LK HY + FMAA +S  MD T+K+   + D
Sbjct: 711  IFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKQHYPAQFMAATISSDMDKTDKVVTFI-D 769

Query: 798  AIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFG 856
              +   L +LPP++N  +++F     S  +  ++ YGLGAIKG G+  +  I+  R + G
Sbjct: 770  ECRAMNLELLPPDVNGGQFHF-----SVDQQNRVIYGLGAIKGLGEGPVSNILAARNEGG 824

Query: 857  FFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE------KRYMLVASIDVALKNAEK 910
             F +LFDF  R+D + +N+R I +LI SGAFD          +R +++A++D A+K AE+
Sbjct: 825  PFKDLFDFCARVDGRKVNKRAIEALIRSGAFDEVGPEGEIGYRRAVMLAAMDQAVKLAEQ 884

Query: 911  TKKFINQLSLFKNDDNNNLKE------YLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFC 964
              +  N  S   +   N++ E      Y +Y    S S ++ L  E+  LG  L+ H   
Sbjct: 885  HAR--NTSSGMGDLFGNSIVESASDINYTSYGAARSLSGRERLNGERDTLGLYLTGHPID 942

Query: 965  IYETEIRQFIPIYLSELKPT-YSCTVSGIITELKLKTTYRGK-ILIIVIDDNSNSVEVII 1022
             YE E+++  P  +S+L+P     TVSG+I  +++    RG+    I +DD S  +E+ I
Sbjct: 943  EYEEELQKMHPNRISKLRPAKVLATVSGMIIAMRVMKNKRGENFAFITLDDKSGRLELSI 1002

Query: 1023 NNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN- 1081
              + Y   + IL ++ LL+V G V ED F   +++ AE I  I  AR    K+ ++  + 
Sbjct: 1003 FAEKYNVYREILVKDALLVVQGVVSEDSFTGGLKMLAESIQSIYEARCSKVKRLALTIDS 1062

Query: 1082 RTFN---ISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            ++F+   +  L+  +  ++  N  P  + Y I  S    +K    ++VQP D+L
Sbjct: 1063 KSFDGKWVESLQSSVNAYRDGN-CPLEVDY-IGPSASGRLKLGSQWRVQPRDEL 1114


>gi|410860625|ref|YP_006975859.1| DNA polymerase III subunit alpha [Alteromonas macleodii AltDE1]
 gi|410817887|gb|AFV84504.1| DNA polymerase III subunit alpha [Alteromonas macleodii AltDE1]
          Length = 1154

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1084 (44%), Positives = 691/1084 (63%), Gaps = 28/1084 (2%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   FIHLR+HS++S++DGL ++  ++   A    PA+AITD  N+ G++KFY  A+N G
Sbjct: 1    MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D W+TNE    +P RL LL  N+ GY  +  L+SKAY+      RA I   WL
Sbjct: 61   IKPIIGTDFWVTNEAFGDEPFRLTLLAMNDEGYKNITILISKAYLRGHLAHRAVIDQAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               ++ +G+I LSGA  GD+G+ +      + ++    +   FPD FY+E+ R  +    
Sbjct: 121  --AEHAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLELIRTGRQGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A    LP+VAT+ + F+ +  F AHE+R CI +G  L + +R K+++++Q 
Sbjct: 179  DYLHHAVELAEQHGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDNRRPKRYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM++LF DIP AI+NT+EIAKRCN+ +   +  LP+FPT   +   DFL+  S+ 
Sbjct: 239  LRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPT-GGMTTEDFLVKVSEE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ D E+ K ++  Y  RL+ E+E I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG+ AVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL  A K
Sbjct: 418  AELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFK 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQL E  +++EEV+ LI++A+ +EG+ RN G HAGGV+IAP+ + +F PLY  +    
Sbjct: 476  AEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGNN 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             ++Q+DK+D+E  GL+KFDFLGL TL+I+   I  IK+   K  +  ++ +PL D  ++ 
Sbjct: 536  PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKE--GKNVDVDISAIPLEDPKSFR 593

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 594  TLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 653

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        +++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  
Sbjct: 654  EEISYPDAEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPE 713

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  GA    +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 714  EMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHY 773

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  G+ ILPP++N  KY F   ++S+G   +I 
Sbjct: 774  PAEFMAAVMSADMDNTDKIVTLV-DECERMGIEILPPDLNAGKYKF--TVDSEG---RIV 827

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R+  G F +LFDF  ++D K +N+R++  L+ +GA D   
Sbjct: 828  YGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAGAMDNLG 887

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+A++  AL  A +  K     Q  +F        +    +  VP W +K  L  
Sbjct: 888  PHRATLMATLPEALAAAGQHAKAESFGQSDMFGLLTTEPEEVQQAFADVPEWPEKVWLEG 947

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            EK  LG  L+ H    Y  E+R +    L +LKPT      +  G++  +++ T  RG +
Sbjct: 948  EKDTLGLYLTGHPINQYADELRYYTDGRLVDLKPTNKDQLASAVGLVLGVRVMTNKRGRR 1007

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
              I+ +DD S  ++V     +YE+ +++L+ + +L++ G+V  D F     I A  + DI
Sbjct: 1008 WAIVTLDDKSARMDVRFFPDMYEQFESLLETDRILLIKGQVSFDDFSGGNTITARDVMDI 1067

Query: 1066 NVAR 1069
              AR
Sbjct: 1068 VQAR 1071


>gi|113970961|ref|YP_734754.1| DNA polymerase III subunit alpha [Shewanella sp. MR-4]
 gi|113885645|gb|ABI39697.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-4]
          Length = 1158

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1158 (42%), Positives = 739/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +NL G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+     + +   L ++  NN+GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGHVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSG   GD+G A+  G N   E+    + + F   +Y+E+ R  + +    
Sbjct: 122  VTYNEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRTDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A++NT+EIAKRCN+ +   +  LP FPT  +++I D+L+  SK GL
Sbjct: 242  SEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDYLVDCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I K+  K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL+I+PP++N   + F   ++ D    +I 
Sbjct: 779  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLTIIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A+  A++  K   I Q  +F   N D  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK   +L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFNYLLEKDRILICEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFNRT-FNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  +     +  + +  N S+L+ I       +NG +P V+ Y   ++ K + +  
Sbjct: 1071 ISEARSHFASALEIDLDASQLNPSVLESIEQSISPWRNGAVPVVINYSQAQA-KGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
             +++V P D+L  AL +L
Sbjct: 1130 EHWRVNPSDELVFALESL 1147


>gi|258621011|ref|ZP_05716045.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573]
 gi|424807457|ref|ZP_18232865.1| DNA polymerase III subunit alpha [Vibrio mimicus SX-4]
 gi|258586399|gb|EEW11114.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573]
 gi|342325399|gb|EGU21179.1| DNA polymerase III subunit alpha [Vibrio mimicus SX-4]
          Length = 1159

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1107 (44%), Positives = 717/1107 (64%), Gaps = 40/1107 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G+IG A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  MEHAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI----KKINTKTTNFSLNKLPLNDKDT 598
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +    KK+        +  +PL+D  +
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPVR--IEAIPLDDTRS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            +  L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKH
Sbjct: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKT
Sbjct: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    
Sbjct: 777  HYPAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---A 830

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D 
Sbjct: 831  IVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDR 890

Query: 890  FNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L
Sbjct: 891  LGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG
Sbjct: 951  EGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070

Query: 1064 DINVARILYGKKFSVMFNRTFNISILK 1090
            D+  AR    +KF+    R  +ISIL+
Sbjct: 1071 DLGSAR----EKFA----RGLSISILQ 1089


>gi|15642243|ref|NP_231876.1| DNA polymerase III subunit alpha [Vibrio cholerae O1 biovar El Tor
            str. N16961]
 gi|121586281|ref|ZP_01676071.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80]
 gi|121726522|ref|ZP_01679771.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52]
 gi|147675187|ref|YP_001217760.1| DNA polymerase III subunit alpha [Vibrio cholerae O395]
 gi|153817071|ref|ZP_01969738.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457]
 gi|153820865|ref|ZP_01973532.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33]
 gi|153825312|ref|ZP_01977979.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2]
 gi|227082369|ref|YP_002810920.1| DNA polymerase III subunit alpha [Vibrio cholerae M66-2]
 gi|227118691|ref|YP_002820587.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|254286447|ref|ZP_04961404.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226]
 gi|254849375|ref|ZP_05238725.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10]
 gi|9656805|gb|AAF95389.1| DNA polymerase III, alpha subunit [Vibrio cholerae O1 biovar El Tor
            str. N16961]
 gi|121549547|gb|EAX59573.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80]
 gi|121630975|gb|EAX63354.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52]
 gi|126512339|gb|EAZ74933.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457]
 gi|126521657|gb|EAZ78880.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33]
 gi|146317070|gb|ABQ21609.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|149740996|gb|EDM55065.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2]
 gi|150423396|gb|EDN15340.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226]
 gi|227010257|gb|ACP06469.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2]
 gi|227014141|gb|ACP10351.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|254845080|gb|EET23494.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10]
          Length = 1164

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 9    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 69   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 127  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 186

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 187  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 246

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 247  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 306  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 366  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 426  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 483

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 484  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 543

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 544  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 603

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 604  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 663

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 664  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 723

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 724  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 783

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 784  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 837

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 838  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 897

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 898  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 957

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 958  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1017

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1018 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1077

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1078 GSAR----EKFA----RGLSISILQ 1094


>gi|449143598|ref|ZP_21774421.1| DNA polymerase III subunit alpha [Vibrio mimicus CAIM 602]
 gi|449080596|gb|EMB51507.1| DNA polymerase III subunit alpha [Vibrio mimicus CAIM 602]
          Length = 1159

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1107 (44%), Positives = 717/1107 (64%), Gaps = 40/1107 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G+IG A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  MEHAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI----KKINTKTTNFSLNKLPLNDKDT 598
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +    KK+        +  +PL+D  +
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPVR--IEAIPLDDARS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            +  L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKH
Sbjct: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKT
Sbjct: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    
Sbjct: 777  HYPAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---A 830

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D 
Sbjct: 831  IVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDR 890

Query: 890  FNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L
Sbjct: 891  LGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG
Sbjct: 951  EGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070

Query: 1064 DINVARILYGKKFSVMFNRTFNISILK 1090
            D+  AR    +KF+    R  +ISIL+
Sbjct: 1071 DLGSAR----EKFA----RGLSISILQ 1089


>gi|183179456|ref|ZP_02957667.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3]
 gi|183012867|gb|EDT88167.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3]
          Length = 1164

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 716/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 9    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 69   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 127  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 186

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 187  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 246

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 247  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 306  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 366  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 426  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 483

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 484  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 543

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 544  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 603

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 604  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 663

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 664  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 723

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 724  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 783

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 784  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 837

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 838  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 897

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 898  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 957

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 958  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1017

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1018 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1077

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
            + AR    +KF+    R  +ISIL+
Sbjct: 1078 SSAR----EKFA----RGLSISILQ 1094


>gi|163801794|ref|ZP_02195691.1| DNA polymerase III subunit alpha [Vibrio sp. AND4]
 gi|159174302|gb|EDP59106.1| DNA polymerase III subunit alpha [Vibrio sp. AND4]
          Length = 1159

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1150 (42%), Positives = 728/1150 (63%), Gaps = 32/1150 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFIHLRVHSDYSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGAAHGNGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L LL  NN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVIDKTWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  G+IG A+  G   +AE+    + + FPD FY+E+ R  +P+    
Sbjct: 122  AELSEGLIVLSGAKNGEIGKALLKGNRTVAESCVAFYQEYFPDRFYLELVRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +  A+   LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LHFAVEFANETQLPVVATNEVVFIGEELFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+NSIPVGP
Sbjct: 301  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNSIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPIQIESIPLVDAASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++  G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDQSG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  +F    +   +    Y +VP+W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGSR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDSLDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  S+  + +  N    ++   +L       +P  +YY      +  +    
Sbjct: 1073 GTAREKYARGLSISVDASQINDKFFEQFTRILEPHKAGTVPVNVYYQ-RADARARLTLGT 1131

Query: 1123 NYKVQPIDDL 1132
             ++V P D L
Sbjct: 1132 EWRVTPTDTL 1141


>gi|260902378|ref|ZP_05910773.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|417319196|ref|ZP_12105754.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus 10329]
 gi|308110181|gb|EFO47721.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|328474386|gb|EGF45191.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus 10329]
          Length = 1159

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1161 (42%), Positives = 734/1161 (63%), Gaps = 48/1161 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L +L  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  GDIG A+  G   + E+    + + FPD FY+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I++A   +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRIESIPLEDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDD-----NNNLKEYLN-YVKVPSWSKKQ 945
              R  ++AS++ A+K A +     +Q   F   D      +  +E  N Y +VP W +K 
Sbjct: 893  PHRAAMMASLNDAVKAASQH----HQAEAFGQGDMFGVLTDAPEEVENKYTQVPPWPEKV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTY 1002
             L  E++ LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT 
Sbjct: 949  WLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTK 1008

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A +
Sbjct: 1009 RGTRIGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSARE 1068

Query: 1062 IFDINVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
            + D+  AR  Y +  SV       N  F      +IL   K    +P  +YY      + 
Sbjct: 1069 VMDLGSAREKYARGLSVSIDANQINDQF-FEQFSRILEPHKAGT-VPVNVYYQ-RADARA 1125

Query: 1117 EMKFPLNYKVQP----IDDLK 1133
             +     ++V P    IDDLK
Sbjct: 1126 RLTLGTEWRVTPSDTLIDDLK 1146


>gi|388602536|ref|ZP_10160932.1| DNA polymerase III subunit alpha [Vibrio campbellii DS40M4]
          Length = 1159

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1152 (42%), Positives = 730/1152 (63%), Gaps = 36/1152 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L LL  NN GY  L  L+SKAY+      +  +   WL  
Sbjct: 64   PIIGADFKMQSDDFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  G+IG A+  G   + ++    +++ FPD FY+E+ R  +P+    
Sbjct: 122  AELSEGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A  + LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LHFAIELAEELELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  +          +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEAVRIESIPLDDAASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  +F    +   +    Y +VP+W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
              AR  Y +  SV       N  F      +IL   K    +P  +YY      +  +  
Sbjct: 1073 GTAREKYARGLSVSIDANQINDKF-FEQFTRILEPHKAGT-VPVNVYYQ-RADARARLTL 1129

Query: 1121 PLNYKVQPIDDL 1132
               ++V P D L
Sbjct: 1130 GTEWRVTPTDTL 1141


>gi|444353032|ref|YP_007389176.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Enterobacter aerogenes
            EA1509E]
 gi|443903862|emb|CCG31636.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Enterobacter aerogenes
            EA1509E]
          Length = 1144

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1138 (43%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIKPIVGADFHVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+S+AY          I  +WL   ++Q+GLI LSG 
Sbjct: 61   LGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDWL--VEHQEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              GD+G+++  G   + E     + + FPD +Y+E+ R  + +    +   + +A    L
Sbjct: 119  RKGDVGVSLIRGNMPLVEQCLAFYQQHFPDRYYLELIRTGRQDEESYLHAAVQLAEEHGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL++RL  L+ DPE 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVMKSKEGLEERLEFLFPDPEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RAKRRPEYDQRLDVELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK+D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEGPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  CLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  RKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S++ A
Sbjct: 830  IEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLNDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|262166322|ref|ZP_06034059.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223]
 gi|262026038|gb|EEY44706.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223]
          Length = 1159

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1107 (44%), Positives = 717/1107 (64%), Gaps = 40/1107 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G+IG A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  MEHAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELADQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI----KKINTKTTNFSLNKLPLNDKDT 598
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +    KK+        +  +PL+D  +
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPVR--IEAIPLDDARS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            +  L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKH
Sbjct: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKT
Sbjct: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    
Sbjct: 777  HYPAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---A 830

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D 
Sbjct: 831  IVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDR 890

Query: 890  FNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L
Sbjct: 891  LGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG
Sbjct: 951  EGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070

Query: 1064 DINVARILYGKKFSVMFNRTFNISILK 1090
            D+  AR    +KF+    R  +ISIL+
Sbjct: 1071 DLGSAR----EKFA----RGLSISILQ 1089


>gi|229507681|ref|ZP_04397186.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286]
 gi|229512124|ref|ZP_04401603.1| DNA polymerase III alpha subunit [Vibrio cholerae B33]
 gi|229513887|ref|ZP_04403349.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21]
 gi|229519259|ref|ZP_04408702.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9]
 gi|229607185|ref|YP_002877833.1| DNA polymerase III subunit alpha [Vibrio cholerae MJ-1236]
 gi|255747058|ref|ZP_05421003.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101]
 gi|262167733|ref|ZP_06035435.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27]
 gi|262189888|ref|ZP_06048212.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93]
 gi|379742049|ref|YP_005334018.1| DNA polymerase III subunit alpha [Vibrio cholerae IEC224]
 gi|422308185|ref|ZP_16395338.1| DNA polymerase III, alpha subunit [Vibrio cholerae CP1035(8)]
 gi|424645773|ref|ZP_18083508.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-56A2]
 gi|14195659|sp|P52022.3|DPO3A_VIBCH RecName: Full=DNA polymerase III subunit alpha
 gi|229343948|gb|EEO08923.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9]
 gi|229349068|gb|EEO14025.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21]
 gi|229352089|gb|EEO17030.1| DNA polymerase III alpha subunit [Vibrio cholerae B33]
 gi|229355186|gb|EEO20107.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286]
 gi|229369840|gb|ACQ60263.1| DNA polymerase III alpha subunit [Vibrio cholerae MJ-1236]
 gi|255735460|gb|EET90860.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101]
 gi|262023798|gb|EEY42497.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27]
 gi|262034232|gb|EEY52648.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93]
 gi|378795559|gb|AFC59030.1| DNA polymerase III subunit alpha [Vibrio cholerae IEC224]
 gi|395958311|gb|EJH68807.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-56A2]
 gi|408618050|gb|EKK91139.1| DNA polymerase III, alpha subunit [Vibrio cholerae CP1035(8)]
          Length = 1159

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|429888032|ref|ZP_19369531.1| DNA polymerase III alpha subunit [Vibrio cholerae PS15]
 gi|429224908|gb|EKY31216.1| DNA polymerase III alpha subunit [Vibrio cholerae PS15]
          Length = 1159

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKRGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|416037695|ref|ZP_11573999.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype a str. H5P1]
 gi|347995577|gb|EGY36749.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype a str. H5P1]
          Length = 1158

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1163 (42%), Positives = 734/1163 (63%), Gaps = 45/1163 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + + +   +  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGTDVLVQSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADLPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRA--GVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  ERYIKVALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  ++ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  DGLEERLKVMFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       +N +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDINAIPLDDQQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMRM-GLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q+ +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVMSTRVAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N LP  +YY   +  + 
Sbjct: 1069 MTIDEARARYAKSLAICLSQE---QITPQFIKQFKSILQPYSGNSLPVHIYYQSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPIDDLKLALINL 1139
             +K  + + V P+D+L   L  L
Sbjct: 1125 LVKMGVQWSVNPMDELLTELAAL 1147


>gi|375111100|ref|ZP_09757311.1| DNA polymerase III subunit alpha [Alishewanella jeotgali KCTC 22429]
 gi|374568642|gb|EHR39814.1| DNA polymerase III subunit alpha [Alishewanella jeotgali KCTC 22429]
          Length = 1166

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1094 (43%), Positives = 707/1094 (64%), Gaps = 38/1094 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +   +I+AAA    PALA+TD  N  G+++FY +A+  GIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLAKTKPIIKAAAAQGMPALALTDQMNFCGLVRFYSTAHEAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+ + +   + SRLLLL  +N GY  L +L+SKAY+     G+ ++  +WL +
Sbjct: 64   PIIGVDCWVLHPLFPGESSRLLLLAADNAGYQNLTQLISKAYLRGHVDGKPQLEHDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              + +G+I LSG   G +G A+              + + FP+ FY+E+ R  +P+    
Sbjct: 124  --HSNGIIVLSGGKDGPLGKALLKENPHSVRALVDFYQQHFPERFYLELVRTNRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q+ + +A    LP+VAT+ + FLK  +F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LQKAVLLAEAEQLPVVATNEVVFLKPEDFAAHEIRVAIHDGFTLDDKRRPKNYSAEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF D+P A++N++EIAKRCN+ +  G+  LP FPT   ++  D+L+ KS+ GL
Sbjct: 242  SSEEMAELFADLPEALENSVEIAKRCNVTIRLGEYFLPAFPT-GGLSDADYLVLKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RLL L+ D ++    +  Y +RLQ E++ I +M F GYFL+V +FIQW+K+N IPVGP
Sbjct: 301  EQRLLQLFPDEQVRAARRGEYDERLQIELDVINQMGFPGYFLVVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A KEE
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPTPG--MTLEQAFKEE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E   ++EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PRLPELYDSDEEVRDLIDMARRLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDEHGQNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+IL   +        K       +N +PL D  +Y 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTILQWAVNMANARLRKEGKPLVDINSIPLQDSKSYQ 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L +A+T AVFQLES+GMK++++  +PD FE++IAL++L+RPGP+   ++ NF  RK G 
Sbjct: 599  MLMRADTTAVFQLESRGMKDLIRRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKRGR 658

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 659  EEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYSLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA++ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++K HY
Sbjct: 719  EMAKQRDTFRDGAVQNGIDPELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +   L+++PP++N  +Y F     +  +   I 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVTLV-DECERMQLTLIPPDVNTGQYKF-----TVNEQGHIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF- 890
            YG+GAIKG G+  IEAI+  R + G F++LFDF  ++D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQHGSFSDLFDFCAKVDLKRLNKRVMEKLILSGAMDRLG 892

Query: 891  ---------NEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVP 939
                       +R +L+A+++ A++ AE+  K   + Q  LF     +      +Y  VP
Sbjct: 893  PPLAKGQHAGPQRAILMANLEEAMRAAEQHAKAQAVGQDDLFGLLAADTDSSSSSYKLVP 952

Query: 940  SWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITEL 996
             W  +  L  E++ LG  L+ H    Y  E++ ++   L EL+PT    S  V+G++  +
Sbjct: 953  LWPDEIWLDGERETLGLYLTGHPINRYRDELKHYVNCRLVELQPTKKDQSIQVAGLVVSV 1012

Query: 997  KLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
            ++    +G +  I+ +DD S  ++V    +  E  +++L+++ +L+V+G+V  D F   +
Sbjct: 1013 RVMINKKGRRWAIVTLDDKSARLDVRFFPEQLESFEHLLQKDRILVVTGQVSFDDFNGGL 1072

Query: 1056 RINAEKIFDINVAR 1069
             ++   + +I   R
Sbjct: 1073 TMSGRDVSEITAMR 1086


>gi|153213783|ref|ZP_01948991.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587]
 gi|124115707|gb|EAY34527.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587]
          Length = 1164

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1107 (44%), Positives = 717/1107 (64%), Gaps = 40/1107 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 9    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 69   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 126

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 127  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 186

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 187  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 246

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 247  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 305

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 306  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 365

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 366  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 425

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 426  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 483

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 484  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 543

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 544  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 603

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 604  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 663

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 664  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 723

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 724  EMAKQRAVFQEGAEKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 783

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 784  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 837

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFD   RID K +N+R+I  LI +GA D   
Sbjct: 838  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDLCARIDLKKVNKRVIEKLILAGALDRLG 897

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  ++AS+D A++ A +    +   Q  +F    D   ++++   Y +VP W +K  L
Sbjct: 898  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEDVEQ--KYTQVPEWPEKVRL 955

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG
Sbjct: 956  EGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1015

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ 
Sbjct: 1016 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1075

Query: 1064 DINVARILYGKKFSVMFNRTFNISILK 1090
            D+  AR    +KF+    R  +ISIL+
Sbjct: 1076 DLGSAR----EKFA----RGLSISILQ 1094


>gi|291326493|ref|ZP_06124738.2| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131]
 gi|291314103|gb|EFE54556.1| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131]
          Length = 1144

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1138 (42%), Positives = 734/1138 (64%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++  A+   PA AITD +NL G+++FY +A+  GIKPIIG D ++ +E+
Sbjct: 1    MIDGLAKTGPLVKKVASMGMPAFAITDFTNLCGLVRFYGAAHGAGIKPIIGADFYVESEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + S L +L +NN GY  L  L+S+AY +        I+ EWL K+K  DGLI LSG 
Sbjct: 61   LGDEISHLTVLARNNEGYQNLTLLISEAYQKGYGAVGPTIKREWLAKHK--DGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              GD+G  +  G   + +     +   FPD++Y+E+ R  +P+    +   + +A+   L
Sbjct: 119  RKGDVGQFLLRGNQSLVDECLAFYETHFPDSYYLELVRTGRPDEESYLHAAVELATKKGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F++ ++F AHE+R  I +G  L++ KR K ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVCFIESSDFDAHEIRVAIHDGFTLADPKRPKNYSPQQYLRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ +SK GL++RL  L+ D +I
Sbjct: 239  EALENSVEIAKRCNVTIRLGEYFLPQFPT-GDMKTEDFLVMRSKEGLEERLEFLFPDEKI 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL  E+  I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RAERRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V   YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        ++Q+DK+D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I  ++         +  +PL+D+ ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLHDQKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
            IK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  IKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAIV  R + G F  +FD   R+D K INRR++  LI +GAFD     R  L++S++ A
Sbjct: 830  IEAIVEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDRLGPHRAALMSSLEDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y  VP W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEAPEQVESSYASVPKWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y +EI ++   + L ++ PT      TV G++   K+ TT RG +I I  +DD S  
Sbjct: 950  ITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +++++ +   +K +++L+++ +LI +G+V  D F    ++   ++ DI+ AR  Y +  +
Sbjct: 1010 LDIMLFSDALDKYQHMLEKDNILIATGQVSFDDFNGGNKMTVRELMDISEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + ++  N  +L ++   L       +P  LYY  + + + ++KF + ++V P+D L
Sbjct: 1070 ISLSDKQINDQLLNRLRSTLEPHRSGTIPVHLYYQKDDA-RAKLKFGVVWRVTPVDPL 1126


>gi|212212283|ref|YP_002303219.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212]
 gi|212010693|gb|ACJ18074.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212]
          Length = 1143

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1083 (44%), Positives = 697/1083 (64%), Gaps = 36/1083 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL++HSEYSI+D ++RI+ +++ A +   PA+A+TD  NLF ++KFY+ A NKG
Sbjct: 1    MTISFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG ++ +    E     R   L +N  G+  L +LLS+AY+E        I+ EWL
Sbjct: 61   IKPIIGSELLLA---EGDDVFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHVLIQWEWL 117

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LSGA  G++G A+   R+ +AE    RW   FP  FY+E+QR ++    
Sbjct: 118  VQAN--EGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRTRRDQEE 175

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   I +A    +P+VAT+ + FL + +F AHE R CI +G +L +  R ++++ +Q 
Sbjct: 176  EYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPREYSDQQY 235

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FK+  EM  LF DIP A++NT+EIAKRC++ L  G+  LPKFP P N+ + D+  +++K 
Sbjct: 236  FKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKVEDYFRAQAKQ 295

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +RL+ L     +   +   Y++RL+ EI  I KM F+ YFLIV+DFI WAK + IPV
Sbjct: 296  GLTRRLVGLEMKNNLTHKD---YEERLETEITVITKMGFASYFLIVADFIAWAKQHHIPV 352

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL IT++DPL ++LLFERFLN  R+SMPDFDIDFC EGRDRVI YV
Sbjct: 353  GPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGRDRVIDYV 412

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             +RYG++AV+QI+T+GTMAA+  +RDVGRVL L Y + D I+KL+PF+ G  +TL  A++
Sbjct: 413  AERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG--VTLEKALE 470

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +E  LA+R   +EEV+ LI+LA ++EG+ RN G HAGGV+IAP+KL +F PLY + G   
Sbjct: 471  QEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYSEPGSDH 530

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK-----TTNFSLNKLPLND 595
            +++Q+DKDD+E +GL+KFDFLGL TL+I++   + ++ IN K      T   +  +PL+D
Sbjct: 531  VVTQFDKDDVEAVGLVKFDFLGLRTLTIIN---WAVQNINAKRKIQNETELDIGTIPLDD 587

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
              TY LLK   T AVFQLES+GMK +++  +PD F +I+AL++L+RPGP+   +++ F  
Sbjct: 588  PKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVETFIA 647

Query: 654  RKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
             KHGE   ++  P  + +L  TYG+++YQEQVMQIAQ+L GYSLG AD+LR A+GKKK  
Sbjct: 648  CKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKKKPE 707

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G    GL +  AN+IF+ +EKF+GYGFNKSH+ AYAL++Y TA+LK HY
Sbjct: 708  EMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLKAHY 767

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  MD+T+K+   + +  +   L +LPPNIN S Y F   + + G   +I 
Sbjct: 768  PAEFMAAVLSSDMDNTDKVVGFINEC-RDMNLELLPPNINWSHYPF--TVNTKG---QIV 821

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGAIKG G++ +  IV  R+  G F  LF+F  R+D + +NRR +  LI SGA D F 
Sbjct: 822  YGLGAIKGVGEAAVMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFG 881

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  S+  A + AE+  +   + Q  LF  ++   + E  +Y +VP W+    L  
Sbjct: 882  VSRASLFESLTKAFQAAEQRNRDMILGQHDLF-GEEVKGIDE--DYTEVPEWNDSDRLRG 938

Query: 950  EKKVLGFCLSEHIF--CIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGK-I 1006
            EK+ LG  +S H    CI E +    +PI    L    S  V+G++  ++  TT  GK +
Sbjct: 939  EKETLGLYVSGHPLQACIKEMKAVGAVPINHLSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             I+ ++D +  ++V + N LY++    L ++ +LI+ G V  D +    ++ A+ +  ++
Sbjct: 999  AILSLEDQTGKIDVTLFNDLYQQVAADLTDHAILIIRGTVGRDDYTGGQKMVADMLLTLD 1058

Query: 1067 VAR 1069
              R
Sbjct: 1059 KVR 1061


>gi|229528752|ref|ZP_04418142.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)]
 gi|229332526|gb|EEN98012.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)]
          Length = 1159

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNIGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|384425209|ref|YP_005634567.1| DNA polymerase III subunit alpha [Vibrio cholerae LMA3984-4]
 gi|327484762|gb|AEA79169.1| DNA polymerase III alpha subunit [Vibrio cholerae LMA3984-4]
          Length = 1157

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|170727605|ref|YP_001761631.1| DNA polymerase III subunit alpha [Shewanella woodyi ATCC 51908]
 gi|169812952|gb|ACA87536.1| DNA polymerase III, alpha subunit [Shewanella woodyi ATCC 51908]
          Length = 1157

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1161 (42%), Positives = 731/1161 (62%), Gaps = 41/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HS++S+ DGL ++  +I   +    PA+A+TD +NL G++KFY++ +  GIK
Sbjct: 4    PSFVHLRVHSDFSMSDGLAKVKPIIGKVSELGMPAVALTDQTNLCGLVKFYEACHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D W+     +K    + +L  NN GY  L  L+S AY+      RA I  EWL K
Sbjct: 64   PLIGSDFWVKVPGFDKNLCAVTVLAMNNEGYKNLTLLISDAYLRGHIDDRAVIDHEWLAK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G+I LSG   GDIG A+  G     E+    +   FPD +Y+E+ R  +P+    
Sbjct: 124  --YSEGIILLSGGRQGDIGQALLKGNLPQVESLVEFYQTHFPDRYYLELLRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F     F AHE+R  I++G  L++ +R KK++ EQ FK
Sbjct: 182  LHMAVELAEVKGLPVVATNQVVFNTPELFEAHEIRVAISDGFTLADPRRPKKYSAEQYFK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  +M +LF DIP AI+NT++IAKRCN+ +  G+  LP FPT   + I DFL++ S+ GL
Sbjct: 242  SSEQMCELFEDIPEAIENTVQIAKRCNVTVRLGEYFLPNFPT-GELTIEDFLVAVSEKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+   ++ +Y +RL  E++ I +M F GYFLIV +FIQW K+N IP+GP
Sbjct: 301  EERLEFLFPDPEVRAEKRPKYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNDIPIGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK++P +PG  +TL+ A + E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV+ LI++ + +EG+ RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPIYCDAEGQNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +  KK         +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALQMVNAKKDKLGEERVRIESIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD   +      VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDSEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+I  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFEEGSINNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI ILV D  +   + +LPP++N     F   ++ +G    I 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVILV-DECERMEMPLLPPDVNKGLLKFN--VDDEG---NIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +++I+  RK G F +LFDF  R+D K +N+RI+  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVDSILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDTLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N D  ++K+   +V+   W  K  L 
Sbjct: 893  HRAAMMATLPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDIKQ--QFVECTPWPDKVWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSCRLKDIHPTERGKTMKAAGLVVATRVMMTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI+ G+V  D F    R+ A  I D
Sbjct: 1011 KMGLVTLDDKSARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFNRTFNISILKKILLRFK-----CKNG-LPFVLYYCINKSIKYEM 1118
            +  AR  +     V      + +I    L +F+      KNG +P ++ Y   ++ K + 
Sbjct: 1071 MGEARSHFASAVEVDIE---SHAISTDWLDQFQGAIEPWKNGAVPIMVNYSQPQA-KAQF 1126

Query: 1119 KFPLNYKVQPIDDLKLALINL 1139
            K   +++V P D+L LAL  L
Sbjct: 1127 KLGDSWRVNPTDELMLALETL 1147


>gi|417825479|ref|ZP_12472067.1| DNA polymerase III subunit alpha [Vibrio cholerae HE48]
 gi|340046964|gb|EGR07894.1| DNA polymerase III subunit alpha [Vibrio cholerae HE48]
          Length = 1159

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIDFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|229522191|ref|ZP_04411608.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80]
 gi|419837952|ref|ZP_14361390.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-46B1]
 gi|423735909|ref|ZP_17709101.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-41B1]
 gi|424010247|ref|ZP_17753181.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-44C1]
 gi|229341116|gb|EEO06121.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80]
 gi|408629335|gb|EKL02034.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-41B1]
 gi|408856500|gb|EKL96195.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-46B1]
 gi|408863277|gb|EKM02767.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-44C1]
          Length = 1159

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 714/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E      ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDDLTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|444424943|ref|ZP_21220392.1| DNA polymerase III subunit alpha [Vibrio campbellii CAIM 519 = NBRC
            15631]
 gi|444241728|gb|ELU53248.1| DNA polymerase III subunit alpha [Vibrio campbellii CAIM 519 = NBRC
            15631]
          Length = 1159

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1152 (42%), Positives = 729/1152 (63%), Gaps = 36/1152 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L LL  NN GY  L  L+SKAY+      +  +   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +   GLI LSGA  G+IG A+  G   + ++    +++ FPD FY+E+ R  +P+    
Sbjct: 122  AELSGGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A  + LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LHFAIELAEELELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVRIESIPLDDAPSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  +F    +   +    Y +VP+W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
              AR  Y +  SV       N  F      +IL   K    +P  +YY      +  +  
Sbjct: 1073 GTAREKYARGLSVSIDANQINDKF-FEQFTRILEPHKAGT-VPVNVYYQ-RADARARLTL 1129

Query: 1121 PLNYKVQPIDDL 1132
               ++V P D L
Sbjct: 1130 GTEWRVTPTDTL 1141


>gi|387120503|ref|YP_006286386.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D7S-1]
 gi|415758300|ref|ZP_11481530.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D17P-3]
 gi|416044162|ref|ZP_11574938.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype d str. I63B]
 gi|347996466|gb|EGY37541.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype d str. I63B]
 gi|348655289|gb|EGY70758.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D17P-3]
 gi|385874995|gb|AFI86554.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D7S-1]
          Length = 1158

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1163 (42%), Positives = 733/1163 (63%), Gaps = 45/1163 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + + +   +  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGTDVLVQSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADLPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRA--GVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  ERYIKVALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  ++ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  DGLEERLKVMFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       +N +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDINAIPLDDQQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q+ +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVMSTRVAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N LP  +YY   +  + 
Sbjct: 1069 MTIDEARARYAKSLAICLSQE---QITPQFIKQFKSILQPYSGNSLPVHIYYQSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPIDDLKLALINL 1139
             +K  + + V P D+L   L  L
Sbjct: 1125 LVKMGVQWSVNPTDELLTELAAL 1147


>gi|127513548|ref|YP_001094745.1| DNA polymerase III subunit alpha [Shewanella loihica PV-4]
 gi|126638843|gb|ABO24486.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
          Length = 1157

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1159 (42%), Positives = 723/1159 (62%), Gaps = 37/1159 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DGL ++  ++  A+ D   ALA+TD +NL G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+GCD ++       +   L +L  NN GY  L  L+S AY+      RA I   WLE+
Sbjct: 64   PIVGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQAWLER 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +GLI LSGA  GD+G A+  G     ++    +   FPD +Y+E+ R  +P+    
Sbjct: 124  --YSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + F++  +F AHE+R  I++G  L++ +R ++++++Q F+
Sbjct: 182  LHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRRYSEQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
             Q EM +LF DIP A+QN++EIAKRCN+ +  G+  LP FPT  +++I DFL+  SK GL
Sbjct: 242  IQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPT-GDLSIEDFLVEVSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D       +  Y +RL  E+  I  M F GYFLIV +FIQW K+N IP+GP
Sbjct: 301  EERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  +RDVGRVL   Y F D ISK+IP +PG  +TL+ A + E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV+ LI++ + +EG+ RN G HAGGV+IAP+ + +F PLY        +
Sbjct: 479  PALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYCDAEGHNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  + L+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKEPVRIEAIVLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  GL +LPP++N   + F   ++ D     I 
Sbjct: 779  PAQFMAAVMSADMDNTDKIVTLV-DECERMGLPLLPPDVNKGLFRF--TVDDD---LNIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  R+ G F +LFDF  R+D K +NRR+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVIEKLICAGALDNLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             R  ++A++  A++ A++  K   I Q  +F   ++        +V    W  K  L  E
Sbjct: 893  HRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVHCTPWPDKVWLEGE 952

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG-KI 1006
            +  LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG K+
Sbjct: 953  RDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATRVMMTKRGSKM 1012

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             ++ +DD S  +EV++  + +EK   +L+++ +LIV G+V  D F    R+ A  I D+ 
Sbjct: 1013 GLVTLDDKSARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDDFSGGNRMTARSIIDMG 1072

Query: 1067 VARILYGKKFSVMFNRTFNISILKKILLRFK-----CKNG-LPFVLYYCINKSIKYEMKF 1120
             AR  +     V  +     SI  + L +F+      K G +P V+ Y    + K + + 
Sbjct: 1073 EARSHFAHAVEVDLD---GASITPEWLGQFQQAVEPWKAGSVPLVINYA-QPTAKAQFRL 1128

Query: 1121 PLNYKVQPIDDLKLALINL 1139
               ++V P D+L LAL  L
Sbjct: 1129 GDEWRVNPTDELMLALETL 1147


>gi|375130186|ref|YP_004992286.1| DNA polymerase III subunit alpha [Vibrio furnissii NCTC 11218]
 gi|315179360|gb|ADT86274.1| DNA polymerase III subunit alpha [Vibrio furnissii NCTC 11218]
          Length = 1159

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1153 (42%), Positives = 728/1153 (63%), Gaps = 38/1153 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E    + +RL +L K+N GY  L  L+S AY+      +  I  EWL  
Sbjct: 64   PIVGADFLVRSEEFGDELTRLTVLAKDNVGYKNLTLLISDAYLRGHVQNQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             KY +GLI LSGA  GDIG A+  G   + E     +   F DNFY+E+ R  + +    
Sbjct: 122  IKYAEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYLELVRTGRADEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A    LP+VAT+ + F+   +F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDLAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS  GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVKKSHEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +    +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISK+IP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMIPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDSEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEPPVRIESIPLVDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ+GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++  GL++LPP+IN   Y F   ++  G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECMRM-GLTVLPPDINSGLYRFN--VDDTG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IE I+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A+K A +    +   Q  +F    +   +    Y++VP W +K  L  
Sbjct: 893  PHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVERKYIQVPEWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLVIAARVMTTKRGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++   +L+++++L++SG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVISGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIKYEMK 1119
              AR  Y +  S+   ++    + ++   RF           +P  +YY      +  + 
Sbjct: 1073 GSAREKYARGLSISIEQS---QVDEQFFERFSQILEPHRAGTVPVNVYYQ-RPDARARLT 1128

Query: 1120 FPLNYKVQPIDDL 1132
                ++V P D L
Sbjct: 1129 LGTEWRVTPSDTL 1141


>gi|400405883|ref|YP_006588742.1| DNA polymerase III subunit alpha [secondary endosymbiont of
            Ctenarytaina eucalypti]
 gi|400364246|gb|AFP85314.1| DNA polymerase III, alpha subunit [secondary endosymbiont of
            Ctenarytaina eucalypti]
          Length = 1160

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1154 (43%), Positives = 737/1154 (63%), Gaps = 34/1154 (2%)

Query: 1    MIPQ-FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNK 59
            MI Q FIHLR+HS+YS+IDGL++++ +++ A+  + PALAITD +NLFG++KFY SA+  
Sbjct: 1    MIAQRFIHLRVHSDYSMIDGLVKVDLLVKKASALHMPALAITDFTNLFGLVKFYGSAHGV 60

Query: 60   GIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW 119
            GIKPIIG D ++ +E+   + + L +L  NN GY  L  L+S AY          I  +W
Sbjct: 61   GIKPIIGADFFVQSEMLGNELADLTILAANNVGYHNLTLLISCAYKRGYGAAGPVIDRDW 120

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L   KY++GLI LSG   GD+G  +  G     E     +   FPD +Y+E+ R  + + 
Sbjct: 121  L--MKYREGLILLSGGRKGDVGKYLIRGNIPKVEKCLAFYEMHFPDRYYLELIRTGRADE 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +Q  + +AS   LP+VAT+ ++F     F AHE+R  I +G  L +  R + ++ +Q
Sbjct: 179  EIYLQAAVALASRHGLPVVATNDVRFTSADAFEAHEIRVAIHDGVTLDDVNRPQNYSPQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              +++ EM +LF D+P A+ N++EIA+RCN+ +  GK  LP+FPT   ++  D+L+  ++
Sbjct: 239  YMRSEEEMCELFSDLPEALINSVEIARRCNVTIRLGKHFLPQFPT-GEMSTEDYLVKCAR 297

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+KRL  L+ D  + + ++  Y KRL  E++ I +M F GYFLIV +FIQW+K+N +P
Sbjct: 298  EGLEKRLDFLFPDAHMRREKRAAYDKRLDIEMQVINQMGFPGYFLIVMEFIQWSKDNGVP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL+ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RD VI++
Sbjct: 358  VGPGRGSGAGSLVAYSLNITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEH 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D I+KL+PF PG  +TL  A+
Sbjct: 418  VAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPFDPG--MTLGKAL 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
               PQL      +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY      
Sbjct: 476  LSVPQLQAIYDADEEVKALIDMARKIEGVTRNAGKHAGGVVIAPTKITDFAPLYCDSEGN 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
              ++Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++      + +L  +P  DK 
Sbjct: 536  HPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALTMINARRARQGLDSINLATIPFGDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ +L++A T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   +++NF  RK
Sbjct: 596  SFEMLQRAETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVENFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD     P  K VL  TYGI++YQEQV+QIAQ+L GYSLG AD+LRRA+GKK
Sbjct: 656  HGREAISYPDFEWQHPSLKPVLEPTYGIILYQEQVIQIAQVLAGYSLGSADILRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            +  EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  QPEEMAKQRSVFKSGAESIGIDGEIAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T KI  LV + ++  GL +LPP+IN  +Y+F   +  +G   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKIVGLVDECLR-IGLKVLPPDINSGQYHF--QVNEEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I AI+  R K G F  LFD   R D K +NRRI+  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEKPIAAIIEARNKNGHFRELFDLCARADIKKLNRRILEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ ++D A+K A +  T K   Q  +F     N  +   +Y  V  W +K  
Sbjct: 890  RLGPHRAALLYAVDDAIKAATQYTTAKKNGQKDMFGVLSENPEEVEASYNTVTPWPEKAV 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI  +   + L ++ PT       V G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPITQYLREILYYSGGMCLKDIHPTERGKIVCVGGLVLSTRVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I +  +DD S+ ++V++   + EK +++L+++ +LI  G+V  + F   +++ A +
Sbjct: 1010 RGQRIGVCTLDDRSSRMDVMLFTDVLEKYQHLLEKDRILIAQGQVSFNDFNGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKYEM 1118
            + DIN AR  Y +  ++ + ++  +   LK++ L  +  ++G +P  LYY   +     +
Sbjct: 1070 LTDINEAREKYARGLAISLTDKQIDEQFLKRLRLSLEPYRSGTIPVHLYYQ-GQDAHVLL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   + V P D L
Sbjct: 1129 RFGEAWNVTPTDRL 1142


>gi|422911083|ref|ZP_16945711.1| DNA polymerase III subunit alpha [Vibrio cholerae HE-09]
 gi|423985531|ref|ZP_17738845.1| DNA polymerase III, alpha subunit [Vibrio cholerae HE-46]
 gi|341632455|gb|EGS57321.1| DNA polymerase III subunit alpha [Vibrio cholerae HE-09]
 gi|408663648|gb|EKL34510.1| DNA polymerase III, alpha subunit [Vibrio cholerae HE-46]
          Length = 1159

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 714/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E+  I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELNVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYNADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|161504650|ref|YP_001571762.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:- str. RSK2980]
 gi|160865997|gb|ABX22620.1| hypothetical protein SARI_02771 [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:-]
          Length = 1144

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1138 (43%), Positives = 721/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  +N GY  L  L+SKAY          +  +WL + K  +GLI LSG 
Sbjct: 61   LGDELTHLTVLASDNTGYQNLTLLISKAYQRGYGASGPIVDRDWLIELK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  ++  EM +LF DIP
Sbjct: 179  PVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSIDEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ KSK GL++RL  L+ D E 
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKSKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKKRRPEYDERLNIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  RALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQMVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|406904225|gb|EKD46079.1| hypothetical protein ACD_69C00028G0004 [uncultured bacterium]
          Length = 1152

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1158 (43%), Positives = 726/1158 (62%), Gaps = 41/1158 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +FIHL LH+EYSI D ++RI  + +       PA+A+TD SNLF ++KFYK+A + G
Sbjct: 1    MTTKFIHLSLHTEYSISDSIVRIEQLFQKCIEYNMPAIALTDQSNLFALVKFYKAAISFG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG D+W+ NE     P ++LLL +N NGY  + +L+S+++IE    G   ++  W+
Sbjct: 61   IKPIIGVDIWLENENNRSHPFKMLLLAQNQNGYHHILQLISRSFIEGQYLGVPIVKRSWI 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            ++    D LI LSG   GD+G A+     + A+   + W KIFP+++Y+E+QR  +    
Sbjct: 121  QE--LADSLIILSGGKDGDVGQALLADDLEQAKYLLKFWQKIFPEHYYVELQRTGRAREE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              + + +++A  +N+P+VAT+ ++FL   +F AHE R CI  G  LS+  R + ++++Q 
Sbjct: 179  EYLIKALDLAVKMNIPVVATNAVRFLHPQDFEAHEARVCIHSGHTLSDGSRSRTYSEQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM KLF+DIP ++ N++EIAKRCN+++  GK  LP FP P +         ++  
Sbjct: 239  LRTCDEMEKLFHDIPESLTNSVEIAKRCNVEVALGKTFLPVFPVPLDTTAESLFSKETHL 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL++RL   + D        +R  Y KRL +EI  I +M F+ YFLIV+DF  W++ N I
Sbjct: 299  GLERRLQTTF-DTSTNDFIAIRDEYIKRLDYEISIINQMGFASYFLIVADFTGWSRKNDI 357

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAYSL ITDIDP+ + LLFERFLNP R+S+PDFDIDFC EGRDRVI+
Sbjct: 358  PVGPGRGSGAGSLVAYSLGITDIDPIKHGLLFERFLNPERVSLPDFDIDFCMEGRDRVIE 417

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV  RYGKD V+QI+T+GTMAA+  +RDVGRVL   Y + D I+KLIPF+ G  I L  A
Sbjct: 418  YVIQRYGKDKVAQIITYGTMAARAVVRDVGRVLAYPYGYVDKIAKLIPFELG--IDLKRA 475

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +KEE  L ++   E+EV+ LI+LA ++EGIIRN G HA GV+IAPS L +F PLY +   
Sbjct: 476  LKEEDLLQQKYNEEDEVKILIDLAMKLEGIIRNAGKHAAGVVIAPSALTDFMPLYCEAEG 535

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK-----TTNFSLNKLPL 593
             G+I+Q DKDD+E IGL+KFDFLGL TL+I+D+T   +K +N+           +N +PL
Sbjct: 536  EGVITQLDKDDVEAIGLVKFDFLGLRTLTIIDRT---VKSVNSALKLKDEKPVDINLIPL 592

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNF 651
            +D  TY LL+ + T A+FQ ES+  ++++K  KPD F ++IAL ++ RPG +   ++   
Sbjct: 593  DDVATYKLLQSSKTTAIFQFESRISRDLIKRFKPDCFSDVIALGAIIRPGVLQSGMLDEI 652

Query: 652  CRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
              RK G     Y  PR + +L  TYG+ +YQEQVMQ+AQ L GYSLG ADLLRRA+GKKK
Sbjct: 653  VDRKQGRARITYLHPRLEPILRPTYGVAIYQEQVMQMAQSLAGYSLGSADLLRRAMGKKK 712

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R  F  GA K  + KH AN IF+ +EKFAGYGFNKSH+ AYA++SY TA+LKT
Sbjct: 713  PEEMAMQRAIFIEGAAKNNVDKHAANAIFDLMEKFAGYGFNKSHSAAYAMISYQTAWLKT 772

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA LS  MD+T+K+ +L  +  +  GL I PP+IN+S Y F   + +D    +
Sbjct: 773  HYPAQFMAAVLSSDMDNTDKV-VLFLNECRDLGLKITPPDINISNYQF--TVSAD---NE 826

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G++ +E I+  R   G F +LFD  +R+D + +N+R+I +LI +GA D 
Sbjct: 827  ILYGLGAIKGVGQAAVEIILATRDAQGPFKDLFDLCRRVDTRKVNKRVIEALIYAGALDK 886

Query: 890  FNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R   +A+ ++AL+ A++   ++   Q+ LF      + +    YV  P WSK++ L
Sbjct: 887  IGPGRASQIATFEIALRVADQHGKRRASGQVDLFSELAPED-EIIFEYVVAPEWSKEERL 945

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV--SGIITELKLKTTYRG- 1004
              EK VLGF L+ H    +  E+ +F+ + ++EL P    TV  +G +  LK+  T  G 
Sbjct: 946  KYEKNVLGFYLNGHPIERFAEELSKFVAVNIAELVPEVGKTVLIAGFVRNLKIINTKSGN 1005

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            ++ II ++D + SV+V +  + +   +  L E++L+IV G+V+ D F    RI A K   
Sbjct: 1006 RLAIITLEDMTASVDVTMFAENFANARASLVEDQLVIVEGEVVVDNFSDGYRIRASKAMS 1065

Query: 1065 INVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
            ++ AR +Y +   +           ++ L  IL  ++  N   F+ Y     + +   KF
Sbjct: 1066 LDQARAVYVRGLLLKLEPDKLSDEALNNLYSILKDYRGGNCPVFISY----DNAQTNAKF 1121

Query: 1121 PLN--YKVQPIDDLKLAL 1136
             L   +KV P D+L + L
Sbjct: 1122 VLGDEWKVHPKDELLVKL 1139


>gi|416074589|ref|ZP_11584584.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype b str. SCC1398]
 gi|444337711|ref|ZP_21151646.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype b str. SCC4092]
 gi|348006790|gb|EGY47179.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype b str. SCC1398]
 gi|443546394|gb|ELT56058.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype b str. SCC4092]
          Length = 1158

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1163 (42%), Positives = 732/1163 (62%), Gaps = 45/1163 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + + +   +  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGTDVLVQSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADLPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRA--GVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  ERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  ++   D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLTTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  DGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF--SLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       ++ +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLVDISAIPLDDQQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q+ +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRVAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N LP  +YY   +  + 
Sbjct: 1069 MTIDEARARYAKSLAICLSQE---QITPQFIKQFKSILQPYSGNSLPVHIYYQSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPIDDLKLALINL 1139
             +K  + + V P D+L   L  L
Sbjct: 1125 LVKMGVQWSVNPTDELLTELAAL 1147


>gi|291086159|ref|ZP_06354987.2| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
 gi|291068957|gb|EFE07066.1| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
          Length = 1144

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1138 (43%), Positives = 726/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  + +E+
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFHVRSEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + ++L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI LSG 
Sbjct: 61   LGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVELK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FP+++++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPNSYFLELIRTGRQDEENYLHAAVELAETRGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRSEEEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+QNT+EIAKRCN+ +  G+  LP+FPT  ++   DFL++KSK GL++RL  L+ DPE 
Sbjct: 239  EALQNTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVAKSKEGLEQRLEFLFPDPEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK+D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I     K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  CLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEMAKQRGTFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLSDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  Y L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|261868771|ref|YP_003256693.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D11S-1]
 gi|415770028|ref|ZP_11484643.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D17P-2]
 gi|261414103|gb|ACX83474.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D11S-1]
 gi|348657061|gb|EGY74658.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D17P-2]
          Length = 1158

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1163 (42%), Positives = 732/1163 (62%), Gaps = 45/1163 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + + +   +  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGTDVLVQSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADWPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRA--GVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  ERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  ++   D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLTTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  DGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF--SLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       ++ +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLVDISAIPLDDQQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q+ +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRVAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N LP  +YY   +  + 
Sbjct: 1069 MTIDEARARYAKSLAICLSQE---QITPQFIKQFKSILQPYSGNSLPVHIYYQSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPIDDLKLALINL 1139
             +K  + + V P D+L   L  L
Sbjct: 1125 LVKMGVQWSVNPTDELLTELAAL 1147


>gi|261211363|ref|ZP_05925651.1| DNA polymerase III alpha subunit [Vibrio sp. RC341]
 gi|260839318|gb|EEX65944.1| DNA polymerase III alpha subunit [Vibrio sp. RC341]
          Length = 1159

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1105 (44%), Positives = 713/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  +   WL  
Sbjct: 64   PIIGADFMLQSEEFGDELTKLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              + +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  IDHAEGLIVLSGGKSGEVGRALLKGNQQQVEKCLEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T++EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  TEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EDRLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|229524247|ref|ZP_04413652.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426]
 gi|229337828|gb|EEO02845.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426]
          Length = 1159

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|393762667|ref|ZP_10351293.1| DNA polymerase III subunit alpha [Alishewanella agri BL06]
 gi|392606289|gb|EIW89174.1| DNA polymerase III subunit alpha [Alishewanella agri BL06]
          Length = 1166

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1176 (41%), Positives = 742/1176 (63%), Gaps = 55/1176 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +   +I+AAA    PALA+TD  N  G+++FY +A+  GIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLAKTKPIIKAAAAQGMPALALTDQMNFCGLVRFYSTAHEAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+ + +   + SRLLLL  +N GY  L +L+SKAY+     G+ ++  +WL +
Sbjct: 64   PIIGVDCWVLHPLFPGESSRLLLLAADNAGYQNLTQLISKAYLRGHVDGKPQLEHDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   G +G A+              + + FP+ FY+E+ R  +P+    
Sbjct: 124  --HSSGIIVLSGGKDGPLGKALLKENPHSVRALVDFYQQHFPERFYLELVRTNRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q+ + ++    LP+VAT+ + FLK  +F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LQKAVLLSEAEQLPVVATNEVVFLKPEDFAAHEIRVAIHDGFTLDDKRRPKNYSAEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF D+P A++N++EIAKRCN+ +  G+  LP FPT   ++  D+L+ KS+ GL
Sbjct: 242  SSEEMAELFADLPEALENSVEIAKRCNVTIRLGEYFLPAFPT-GGLSDADYLVLKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RLL L+ D ++    +  Y +RLQ E++ I +M F GYFL+V +FIQW+K+N IPVGP
Sbjct: 301  EQRLLQLFPDEQVRATRRGEYDERLQIELDVINQMGFPGYFLVVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A KEE
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPTPG--MTLEQAFKEE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E   ++EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PRLPELYDSDEEVRDLIDMARRLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDEHGQNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+IL    + +   N +          +N +PL D  
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTILQ---WAVNMANARLRQEGKPLVDINSIPLQDSK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            +Y +L +A+T AVFQLES+GMK++++  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SYQMLMRADTTAVFQLESRGMKDLIRRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
             G E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKK
Sbjct: 656  RGREEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYSLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA++ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++K
Sbjct: 716  KPEEMAKQRDTFRDGAVQNGIDPELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA +S  MD+T+KI  LV D  +   L+++PP++N  +Y F     +  +  
Sbjct: 776  AHYPAEFMAAVMSADMDNTDKIVTLV-DECERMQLTLIPPDVNTGQYKF-----TVNEQG 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             I YG+GAIKG G+  IEAI+  R + G F++LFDF  ++D K +N+R++  LI SGA D
Sbjct: 830  HIVYGIGAIKGVGEGPIEAIIEARNQHGSFSDLFDFCAKVDLKRLNKRVMEKLILSGAMD 889

Query: 889  CF----------NEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYV 936
                          +R +L+A+++ A++ AE+  K   + Q  LF         +  +Y 
Sbjct: 890  RLGPPLAKGQHAGPQRAILMANLEEAMRAAEQHAKAQAVGQDDLFGLLAPAEDTQSSSYK 949

Query: 937  KVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGII 993
             VP W  +  L  E++ LG  L+ H    Y  E++ ++   L EL+PT    S  V+G++
Sbjct: 950  LVPLWPDEIWLDGERETLGLYLTGHPINRYRDELKHYVNCRLVELQPTKKDQSIQVAGLV 1009

Query: 994  TELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
              +++    +G +  I+ +DD S  ++V    +  E  +++L+++++L+V+G+V  D F 
Sbjct: 1010 VSVRVMINKKGRRWAIVTLDDKSARLDVRFFPEQLESFEHLLQKDQILVVTGQVSFDDFN 1069

Query: 1053 KNIRINAEKIFDINVARILYGKKFSVMF-NRTFNISILKKI---LLRFKCKNGLPFVLYY 1108
              + ++   + +I   R    K  ++   ++  + + L+K+   L  ++    +P  L+Y
Sbjct: 1070 GGLTMSGRDVSEITAMREKSLKSLNITVQSQQIDQNYLQKLQDALAEYRAGT-VPVYLWY 1128

Query: 1109 CINKSIKYEMKFPLNYKVQPIDDL-----KLALINL 1139
               +  +  ++    + V P D L     +LA I L
Sbjct: 1129 QREEG-QVRLQLGTAWWVTPADALLHQLKQLATIEL 1163


>gi|421351964|ref|ZP_15802329.1| DNA polymerase III subunit alpha [Vibrio cholerae HE-25]
 gi|395952409|gb|EJH63023.1| DNA polymerase III subunit alpha [Vibrio cholerae HE-25]
          Length = 1159

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHIQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|24373212|ref|NP_717255.1| DNA polymerase III alpha subunit DnaE [Shewanella oneidensis MR-1]
 gi|24347436|gb|AAN54699.1| DNA polymerase III alpha subunit DnaE [Shewanella oneidensis MR-1]
          Length = 1158

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1157 (42%), Positives = 729/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +NL G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   + ++  +N GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYLRGQVQGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  G++ LSG   GDIG A+  G N   E+    + + F   +++E+ R  +P+    
Sbjct: 122  ITYNPGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGRYFLELLRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ NT+EIAKRCN+ +   +  LP FPT  +++I DFL+  SK GL
Sbjct: 242  SEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPT-GDMSIEDFLVDCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I K+  K   +   +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRSPIRIEAIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
               FMAA +S  MD+T+KI  LV D  +  GL+I+PP++N   + F   ++ D    +I 
Sbjct: 779  PPQFMAAVMSADMDNTDKIVTLV-DECERMGLTIIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G FT+LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLICAGALDALGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A+  A++  K   I Q  +F   N D  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFNRT-FNISILKKILLRFK-CKNGLPFVLYYCINKSIKYEMKFPL 1122
            I+ AR  +     +    +    S+L  I       +NG   VL        K + +   
Sbjct: 1071 ISEARSHFASALEIDLEASQLTPSMLDSIEQAISPWRNGAVPVLINYSQAQAKGQFRLAE 1130

Query: 1123 NYKVQPIDDLKLALINL 1139
             ++V P D+L  AL +L
Sbjct: 1131 AWRVNPSDELVFALESL 1147


>gi|419113006|ref|ZP_13658042.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC5A]
 gi|419129752|ref|ZP_13674609.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC5D]
 gi|377966859|gb|EHV30269.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC5A]
 gi|377982997|gb|EHV46247.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC5D]
          Length = 1144

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1138 (43%), Positives = 724/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  N++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GNMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|154706370|ref|YP_001424773.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111]
 gi|154355656|gb|ABS77118.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111]
          Length = 1143

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1084 (44%), Positives = 698/1084 (64%), Gaps = 38/1084 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL++HSEYSI+D ++RI+ +++ A +   PA+A+TD  NLF ++KFY+ A NKG
Sbjct: 1    MTISFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG ++ +    E     R   L +N  G+  L +LLS+AY+E        I+ EWL
Sbjct: 61   IKPIIGSELLLA---EGDDVFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHVLIQWEWL 117

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LSGA  G++G A+   R+ +AE    RW   FP  FY+E+QR ++    
Sbjct: 118  VQAN--EGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRTRRDQEE 175

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   I +A    +P+VAT+ + FL + +F AHE R CI +G +L +  R ++++ +Q 
Sbjct: 176  EYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPREYSDQQY 235

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FK+  EM  LF DIP A++NT+EIAKRC++ L  G+  LPKFP P N+ + D+  +++K 
Sbjct: 236  FKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKVEDYFRAQAKQ 295

Query: 301  GLKKRLLNL-YKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            GL +RL+ L  K+   +K     Y++RL+ EI  I KM F+ YFLIV+DFI WAK + IP
Sbjct: 296  GLTRRLVGLEMKNNLTHK----DYEERLETEITVITKMGFASYFLIVADFIAWAKQHHIP 351

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL IT++DPL ++LLFERFLN  R+SMPDFDIDFC EGRDRVI Y
Sbjct: 352  VGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGRDRVIDY 411

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V +RYG++AV+QI+T+GTMAA+  +RDVGRVL L Y + D I+KL+PF+ G  +TL  A+
Sbjct: 412  VAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG--VTLEKAL 469

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            ++E  LA+R   +EEV+ LI+LA ++EG+ RN G HAGGV+IAP+KL +F PLY + G  
Sbjct: 470  EQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYSEPGSD 529

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT-----TNFSLNKLPLN 594
             +++Q+DKDD+E +GL+KFDFLGL TL+I++   + ++ IN K      T   +  +PL+
Sbjct: 530  HVVTQFDKDDVEAVGLVKFDFLGLRTLTIIN---WAVQNINAKCKIQNETELDIGTIPLD 586

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D  TY LLK   T AVFQLES+GMK +++  +PD F +I+AL++L+RPGP+   +++ F 
Sbjct: 587  DPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVETFI 646

Query: 653  RRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
              KHGE   ++  P  + +L  TYG+++YQEQVMQIAQ+L GYSLG AD+LR A+GKKK 
Sbjct: 647  ACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKKKP 706

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM + R  F  G    GL +  AN+IF+ +EKF+GYGFNKSH+ AYAL++Y TA+LK H
Sbjct: 707  EEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLKAH 766

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + FMAA LS  MD+T+K+   + +  +   L +LPPNIN S Y F   + + G   +I
Sbjct: 767  YPAEFMAAVLSSDMDNTDKVVGFINEC-RDMNLELLPPNINWSHYPF--TVNTKG---QI 820

Query: 832  RYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
             YGLGAIKG G++    IV  R+  G F  LF+F  R+D + +NRR +  LI SGA D F
Sbjct: 821  VYGLGAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTF 880

Query: 891  NEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
               R  L  S+  A + AE+  +   + Q  LF  ++   + E  +Y +VP W+    L 
Sbjct: 881  GVSRASLFESLTKAFQAAEQRNRDMILGQHDLF-GEEVKGIDE--DYTEVPEWNDSDRLR 937

Query: 949  EEKKVLGFCLSEHIF--CIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGK- 1005
             EK+ LG  +S H    CI E +    +PI    L    S  V+G++  ++  TT  GK 
Sbjct: 938  GEKETLGLYVSGHPLQACIKEMKAVGAVPINHLSLSEKNSVVVAGMMMGMRTITTRSGKR 997

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I+ ++D +  ++V + N LY++    L ++ +L++ G V  D +    ++ A+ +  +
Sbjct: 998  MAILSLEDQTGKIDVTLFNDLYQQVAADLTDHAILVIRGTVGRDDYTGGQKMVADMLLTL 1057

Query: 1066 NVAR 1069
            +  R
Sbjct: 1058 DKVR 1061


>gi|300715411|ref|YP_003740214.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
 gi|299061247|emb|CAX58356.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
          Length = 1160

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1152 (42%), Positives = 730/1152 (63%), Gaps = 35/1152 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +++ AA+   PA+ ITD  NL G++KFY  A+ +G+K
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLVKKAASLGMPAIGITDYLNLCGLVKFYGGAHGQGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  ++++       +L +L  NN GY  L  L+SKAY          I  +WL  
Sbjct: 64   PIIGADFKVSSDAMGDDLGQLTILAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRN-DIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
             +  +GLI LSG   GD+G  +  G +  +AE  A  + + FP+ +Y+E+ R  + +   
Sbjct: 122  IELGEGLILLSGGRRGDVGQMLLRGNHAQVAECLAF-YQQYFPERYYLELIRTGRQDEET 180

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             +   + +A   ++P+VAT+ + FL+  +F AHE+R  I +G  L + KR K ++ +Q  
Sbjct: 181  WVHAAVELAIANSIPVVATNEVCFLEAGDFDAHEIRVAIHDGFTLDDPKRPKNYSPQQYL 240

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            +T+ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP+FPT   +   DFL+ KS+ G
Sbjct: 241  RTEEEMCELFSDIPEALANSVEIAKRCNVTIRLGEYFLPQFPT-GEMTTEDFLVMKSREG 299

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L++RL  L+ D  +   ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVG
Sbjct: 300  LEERLEFLFPDAAVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVG 359

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD VI++V 
Sbjct: 360  PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVA 419

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            + YG+ AVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP +PG  +TL  A   
Sbjct: 420  EMYGRKAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPEPG--MTLEKAFAA 477

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EPQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY  E     
Sbjct: 478  EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDENGNFP 537

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTY 599
            ++Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+DK ++
Sbjct: 538  VTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRKKQGEPPIDIAAIPLDDKKSF 597

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG 657
            ++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RKHG
Sbjct: 598  DMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 658  -EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
             E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GYSLG AD+LRRA+GKK  
Sbjct: 658  REAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNP 717

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK H
Sbjct: 718  VEMAKQRGGFEDGAKSRGIEGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN  +Y F   +  DG   +I
Sbjct: 778  YPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGQYQFH--VNDDG---EI 831

Query: 832  RYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
             YG+GAIKG G+  IEA +  R + G+F  LFD   R D K +NRR++  L+ SGAFD  
Sbjct: 832  VYGIGAIKGVGEGPIEAFIEARNEGGYFRELFDLCARTDTKKLNRRVLEKLVMSGAFDRL 891

Query: 891  NEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
               R  L++++  ALK A++  K   I Q  +F            +Y  +  W ++ +L 
Sbjct: 892  GPHRAALMSALPEALKAADQHAKAEAIGQADMFGVLAEEPAHIEKSYADIKRWPEQVQLD 951

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYSCTVS---GIITELKLKTTYRG 1004
             E++ LG  L+ H    Y  EI +++  + L ++ PT    ++   G++   ++  T RG
Sbjct: 952  GERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKMTMAVGLVVAARVMVTKRG 1011

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I I  +DD S  +EV++     EK +++L+++ +LIVSG+V  D F   +++ A  + 
Sbjct: 1012 NRIGICTLDDRSGRLEVMLFTDALEKFQHLLEKDRILIVSGQVSFDDFSGGLKMTARDVM 1071

Query: 1064 DINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKF 1120
            DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY   +  + +++F
Sbjct: 1072 DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-REDARAKLRF 1130

Query: 1121 PLNYKVQPIDDL 1132
               ++V P D L
Sbjct: 1131 GAAWRVSPSDRL 1142


>gi|161830648|ref|YP_001597182.1| DNA polymerase III subunit alpha [Coxiella burnetii RSA 331]
 gi|161762515|gb|ABX78157.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331]
          Length = 1143

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1083 (44%), Positives = 697/1083 (64%), Gaps = 36/1083 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL++HSEYSI+D ++RI+ +++ A +   PA+A+TD  NLF ++KFY+ A NKG
Sbjct: 1    MTISFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG ++ +    E     R   L +N  G+  L +LLS+AY+E        I+ EWL
Sbjct: 61   IKPIIGSELLLA---EGDDVFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHVLIQWEWL 117

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LSGA  G++G A+   R+ +AE    RW   FP  FY+E+QR ++    
Sbjct: 118  VQAN--EGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRTRRDQEE 175

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   I +A    +P+VAT+ + FL + +F AHE R CI +G +L +  R ++++ +Q 
Sbjct: 176  EYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPREYSDQQY 235

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FK+  EM  LF DIP A++NT+EIAKRC++ L  G+  LPKFP P N+ + D+  +++K 
Sbjct: 236  FKSAEEMKALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKVEDYFRAQAKQ 295

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +RL+ L     +   +   Y++RL+ EI  I KM F+ YFLIV+DFI WAK + IPV
Sbjct: 296  GLTRRLVGLEMKNNLTHKD---YEERLETEITVITKMGFASYFLIVADFIAWAKQHHIPV 352

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL IT++DPL ++LLFERFLN  R+SMPDFDIDFC EGRDRVI YV
Sbjct: 353  GPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGRDRVIDYV 412

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             +RYG++AV+QI+T+GTMAA+  +RDVGRVL L Y + D I+KL+PF+ G  +TL  A++
Sbjct: 413  AERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG--VTLEKALE 470

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +E  LA+R   +EEV+ LI+LA ++EG+ RN G HAGGV+IAP+KL +F PLY + G   
Sbjct: 471  QEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYSEPGSDH 530

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK-----TTNFSLNKLPLND 595
            +++Q+DKDD+E +GL+KFDFLGL TL+I++   + ++ IN K      T   +  +PL+D
Sbjct: 531  VVTQFDKDDVEAVGLVKFDFLGLRTLTIIN---WAVQNINAKRKIQNETELDIGTIPLDD 587

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
              TY LLK   T AVFQLES+GMK +++  +PD F +I+AL++L+RPGP+   +++ F  
Sbjct: 588  PKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVETFIA 647

Query: 654  RKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
             KHGE   ++  P  + +L  TYG+++YQEQVMQIAQ+L GYSLG AD+LR A+GKKK  
Sbjct: 648  CKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKKKPE 707

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G    GL +  AN+IF+ +EKF+GYGFNKSH+ AYAL++Y TA+LK HY
Sbjct: 708  EMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLKAHY 767

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  MD+T+K+   + +  +   L +LPPNIN S Y F   + + G   +I 
Sbjct: 768  PAEFMAAVLSSDMDNTDKVVGFINEC-RDMNLELLPPNINWSHYPF--TVNTKG---QIV 821

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGAIKG G++    IV  R+  G F  LF+F  R+D + +NRR +  LI SGA D F 
Sbjct: 822  YGLGAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFG 881

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  S+  AL+ AE+  +   + Q  LF  ++   + E  +Y +VP W+    L  
Sbjct: 882  VSRASLFESLTKALQAAEQRNRDMILGQHDLF-GEEVKGIDE--DYTEVPEWNDSDRLRG 938

Query: 950  EKKVLGFCLSEHIF--CIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGK-I 1006
            EK+ LG  +S H    CI E +    +PI    L    S  V+G++  ++  TT  GK +
Sbjct: 939  EKETLGLYVSGHPLQACIKEMKAVGAVPINHLSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             I+ ++D +  ++V + N LY++    L ++ +L++ G V  D +    ++ A+ +  ++
Sbjct: 999  AILSLEDQTGKIDVTLFNDLYQQVAADLTDHAILVIRGTVGRDDYTGGQKMVADMLLTLD 1058

Query: 1067 VAR 1069
              R
Sbjct: 1059 KVR 1061


>gi|146292466|ref|YP_001182890.1| DNA polymerase III subunit alpha [Shewanella putrefaciens CN-32]
 gi|145564156|gb|ABP75091.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens CN-32]
          Length = 1157

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1158 (42%), Positives = 733/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GDIG A+  G N   E+    +   F + +++E+ R  +P+    
Sbjct: 122  LTYNEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A     P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVVLAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ NT+EIAKRCN+ +   +  LP FPT  +++I DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I K+  K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL+++PP++N   + F   ++ D    +I 
Sbjct: 779  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLTLIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDSLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFN-RTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I  AR  + K   V  +      ++L  I   +       +P ++ Y   ++ K + +  
Sbjct: 1071 IGEARSHFAKALEVDLDAEKLTPAVLDSIEQAMSPWRSGAVPVLINYSQTQA-KGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
             +++V P D+L  AL +L
Sbjct: 1130 ESWRVNPSDELVFALESL 1147


>gi|397166863|ref|ZP_10490307.1| DNA polymerase III subunit alpha [Enterobacter radicincitans DSM
            16656]
 gi|396091951|gb|EJI89517.1| DNA polymerase III subunit alpha [Enterobacter radicincitans DSM
            16656]
          Length = 1144

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 726/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY +A+  G+KPI+G D+ + +++
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGAGMKPIVGADLHVQSDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + ++L +L  NN GY  L  L+S+AY          I  +WL++    +GLI LSG 
Sbjct: 61   LGDELTQLTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDWLQE--LGEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + E     + + FPD +Y+E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGKSLLRGNSVLVEQCLDFYKEHFPDRYYLELIRTGRADEEPYLHAAVQLAEEHGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+   +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRSEEEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++NT+EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL++RL  L+ D ++
Sbjct: 239  EALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVEKSKVGLEERLAFLFPDEQV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
               ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RAEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK+D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I     K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRGTFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  KKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWR-MGLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R   G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHSKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLEGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  Y L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|258627365|ref|ZP_05722149.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603]
 gi|258580403|gb|EEW05368.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603]
          Length = 1159

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1107 (44%), Positives = 717/1107 (64%), Gaps = 40/1107 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G+IG A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  MEHAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +PE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI----KKINTKTTNFSLNKLPLNDKDT 598
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +    KK+        +  +PL+D  +
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPVR--IEAIPLDDARS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            +  L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKH
Sbjct: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKT
Sbjct: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    
Sbjct: 777  HYPAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---A 830

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D 
Sbjct: 831  IVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDR 890

Query: 890  FNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L
Sbjct: 891  LGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG
Sbjct: 951  EGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070

Query: 1064 DINVARILYGKKFSVMFNRTFNISILK 1090
            D+  AR    +KF+    R  +ISIL+
Sbjct: 1071 DLGSAR----EKFA----RGLSISILQ 1089


>gi|417737019|ref|ZP_12385632.1| DNA polymerase III subunit alpha [Shigella flexneri 4343-70]
 gi|332762188|gb|EGJ92457.1| DNA polymerase III subunit alpha [Shigella flexneri 4343-70]
          Length = 1144

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTMRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|260767810|ref|ZP_05876745.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260617319|gb|EEX42503.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 1159

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1153 (42%), Positives = 727/1153 (63%), Gaps = 38/1153 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E    + +RL +L K+N GY  L  L+S AY+      +  I  EWL  
Sbjct: 64   PIVGADFLVRSEEFGDELTRLTVLAKDNVGYKNLTLLISDAYLRGHVQNQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             KY +GLI LSGA  GDIG A+  G   + E     +   F DNFY+E+ R  + +    
Sbjct: 122  IKYAEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYLELVRTGRADEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F+   +F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS  GL
Sbjct: 242  SEEEMCELFDDIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVKKSHEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +    +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISK+IP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMIPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDSEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEPPVRIESIPLVDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ+GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++  GL++LPP+IN   Y F   ++  G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECMRM-GLTVLPPDINSGLYRFN--VDDTG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IE I+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A+K A +    +   Q  +F    +   +    Y++VP W +K  L  
Sbjct: 893  PHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVERKYIQVPEWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLVIAARVMTTKRGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++   +L+++++L++SG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVISGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIKYEMK 1119
              AR  Y +  S+   ++    + ++   RF           +P  +YY      +  + 
Sbjct: 1073 GSAREKYARGLSISIEQS---QVDEQFFERFSQILEPHRAGTVPVNVYYQ-RPDARARLT 1128

Query: 1120 FPLNYKVQPIDDL 1132
                ++V P D L
Sbjct: 1129 LGTEWRVTPSDTL 1141


>gi|153839483|ref|ZP_01992150.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810]
 gi|149746988|gb|EDM57976.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810]
          Length = 1159

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1161 (42%), Positives = 734/1161 (63%), Gaps = 48/1161 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L +L  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  GDIG A+  G   + E+    + + FPD FY+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I++A   +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ + E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRIESIPLEDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDD-----NNNLKEYLN-YVKVPSWSKKQ 945
              R  ++AS++ A+K A +     +Q   F   D      +  +E  N Y +VP W +K 
Sbjct: 893  PHRAAMMASLNDAVKAASQH----HQAEAFGQGDMFGVLTDAPEEVENKYTQVPPWPEKV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTY 1002
             L  E++ LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT 
Sbjct: 949  WLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTK 1008

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A +
Sbjct: 1009 RGTRIGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSARE 1068

Query: 1062 IFDINVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
            + D+  AR  Y +  SV       N  F      +IL   K    +P  +YY      + 
Sbjct: 1069 VMDLGSAREKYARGLSVSIDANQINDQF-FEQFSRILEPHKAGT-VPVNVYYQ-RADARA 1125

Query: 1117 EMKFPLNYKVQP----IDDLK 1133
             +     ++V P    IDDLK
Sbjct: 1126 RLTLGTEWRVTPSDTLIDDLK 1146


>gi|388543719|ref|ZP_10147009.1| DNA polymerase III subunit alpha [Pseudomonas sp. M47T1]
 gi|388278276|gb|EIK97848.1| DNA polymerase III subunit alpha [Pseudomonas sp. M47T1]
          Length = 1173

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1188 (41%), Positives = 738/1188 (62%), Gaps = 56/1188 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLRLH+EYS++DGL+RI  +++A      PA+A+TD +N+  ++KFYK++   G
Sbjct: 1    MSVSFVHLRLHTEYSLVDGLVRIKPLVKALTGLNMPAVAVTDQNNMCSLVKFYKASMGGG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPI G D+W++N+  +   SR+ LL  N  GY  + EL+S+ +I+    G+  I  EW+
Sbjct: 61   IKPICGADLWLSNKDPDGPLSRISLLAMNAKGYRNITELISRGFIDGQRNGQVIIEREWV 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+I LS A  G+IG+A+  G    AE   + W  +FPD FY+EIQR  + N  
Sbjct: 121  AEA--SEGVICLSAAKEGEIGVALLGGNPLDAEVLLQEWMAVFPDRFYVEIQRTNRTNDE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A     P+VAT+ ++F+++ +F AHE R CI EG  L + +R K ++ +Q 
Sbjct: 179  EYLHAAVALADKFGAPLVATNDVRFIRQEDFEAHETRVCIGEGRALDDPRRNKNYSDQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM  LF D+P A+ NT+EIAKRCN+ ++ GK  LP +P P  + I+++    S  
Sbjct: 239  LKSAEEMHALFSDLPEALANTVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298

Query: 301  GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL+ RL + L +D  E Y+ ++  Y  RL FE++ II+M F GYFLIV DFIQWAK+N +
Sbjct: 299  GLEDRLSVLLPRDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGV 358

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY   ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI 
Sbjct: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV ++YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A
Sbjct: 419  YVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKA 476

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
             ++E  L + IK +EE  ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y  E  
Sbjct: 477  YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
             G+++Q+DKDD+E  GL+KFDFLGL TL+I+D  +  I +   K     L+   + L+DK
Sbjct: 537  DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIALDDK 596

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
             TY+LL+KA T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F  R
Sbjct: 597  PTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656

Query: 655  KHGE------YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG       + +Y     K VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F  G     +    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717  KKPEEMAKQRGGFIEGCASNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  M +T+K+  L+++ ++T  L +  P++N S++ F   +  +G  
Sbjct: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF--TVNDEG-- 831

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             +I YGLGAIKG G+  +EAI   R+ G F +LFDF  RID K +N+R ++ LI SGA D
Sbjct: 832  -RIIYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCDRIDLKRVNKRTLDGLIRSGALD 890

Query: 889  CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
                             +  R +L+A+++ A+K AE+T +  +         LF ++D +
Sbjct: 891  RLGPYFHDESKAYLANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVDEDAD 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y ++ K    + K+ L  EK+ LG  L+ H    YE EIR+F    + +LKP    
Sbjct: 951  V---YASHRKAKELTLKERLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARGT 1007

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             TV+G+I  L++    +G K+  I +DD S  +E  +    +   +++L+ + +++V G+
Sbjct: 1008 QTVAGMIINLRVMKNKKGDKMGFITLDDRSARIEASLFADSFMAAQSLLQTDAMVVVEGE 1067

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNG 1101
            V  D F   +R+   ++  +  AR    +   +  +    +   ++ L ++  R   +  
Sbjct: 1068 VSNDDFSGGLRLRVNRVMTMEDARTNLAESLRLKVHADGLKGDRLNWLGELCKRH--RGA 1125

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             P  + Y      K  ++F  +Y++ P D L  AL +  G  N  ++Y
Sbjct: 1126 CPITMEYT-GPDAKALLQFGEDYRIDPGDGLIQALRDQFGRENVFLQY 1172


>gi|153208946|ref|ZP_01947159.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212218747|ref|YP_002305534.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154]
 gi|120575604|gb|EAX32228.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212013009|gb|ACJ20389.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154]
          Length = 1143

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1083 (44%), Positives = 696/1083 (64%), Gaps = 36/1083 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL++HSEYSI+D ++RI+ +++ A +   PA+A+TD  NLF ++KFY+ A NKG
Sbjct: 1    MTISFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG ++ +    E     R   L +N  G+  L +LLS+AY+E        I+ EWL
Sbjct: 61   IKPIIGSELLLA---EGDDVFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHVLIQWEWL 117

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LSGA  G++G A+   R+ +AE    RW   FP  FY+E+QR ++    
Sbjct: 118  VQAN--EGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRTRRDQEE 175

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   I +A    +P+VAT+ + FL + +F AHE R CI +G +L +  R ++++ +Q 
Sbjct: 176  EYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPREYSDQQY 235

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FK+  EM  LF DIP A++NT+EIAKRC++ L  G+  LPKFP P N+ + D+  +++K 
Sbjct: 236  FKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKVEDYFRAQAKQ 295

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +RL+ L     +   +   Y++RL+ EI  I KM F+ YFLIV+DFI WAK + IPV
Sbjct: 296  GLTRRLVGLEMKNNLTHKD---YEERLETEITVITKMGFASYFLIVADFIAWAKQHHIPV 352

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL IT++DPL ++LLFERFLN  R+SMPDFDIDFC EGRDRVI YV
Sbjct: 353  GPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGRDRVIDYV 412

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             +RYG++AV+QI+T+GTMAA+  +RDVGRVL L Y + D I+KL+PF+ G  +TL  A++
Sbjct: 413  AERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG--VTLEKALE 470

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +E  LA+R   +EEV+ LI+LA ++EG+ RN G HAGGV+IAP+KL +F PLY + G   
Sbjct: 471  QEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYSEPGSDH 530

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK-----TTNFSLNKLPLND 595
            +++Q+DKDD+E +GL+KFDFLGL TL+I++   + ++ IN K      T   +  +PL+D
Sbjct: 531  VVTQFDKDDVEAVGLVKFDFLGLRTLTIIN---WAVQNINAKRKIQNETELDIGTIPLDD 587

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
              TY LLK   T AVFQLES+GMK +++  +PD F +I+AL++L+RPGP+   +++ F  
Sbjct: 588  PKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVETFIA 647

Query: 654  RKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
             KHGE   ++  P  + +L  TYG+++YQEQVMQIAQ+L GYSLG AD+LR A+GKKK  
Sbjct: 648  CKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKKKPE 707

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G    GL +  AN+IF+ +EKF+GYGFNKSH+ AYAL++Y TA+LK HY
Sbjct: 708  EMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLKAHY 767

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  MD+T+K+   + +  +   L +LPPNIN S Y F   + + G   +I 
Sbjct: 768  PAEFMAAVLSSDMDNTDKVVGFINEC-RDMNLELLPPNINWSHYPF--TVNTKG---QIV 821

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGAIKG G++    IV  R+  G F  LF+F  R+D + +NRR +  LI SGA D F 
Sbjct: 822  YGLGAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFG 881

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  S+  A + AE+  +   + Q  LF  ++   + E  +Y +VP W+    L  
Sbjct: 882  VSRASLFESLTKAFQAAEQRNRDMILGQHDLF-GEEVKGIDE--DYTEVPEWNDSDRLRG 938

Query: 950  EKKVLGFCLSEHIF--CIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGK-I 1006
            EK+ LG  +S H    CI E +    +PI    L    S  V+G++  ++  TT  GK +
Sbjct: 939  EKETLGLYVSGHPLQACIKEMKAVGAVPINHLSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             I+ ++D +  ++V + N LY++    L ++ +L++ G V  D +    ++ A+ +  ++
Sbjct: 999  AILSLEDQTGKIDVTLFNDLYQQVAADLTDHAILVIRGTVGRDDYTGGQKMVADMLLTLD 1058

Query: 1067 VAR 1069
              R
Sbjct: 1059 KVR 1061


>gi|323497991|ref|ZP_08103000.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326]
 gi|323317036|gb|EGA70038.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326]
          Length = 1159

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1165 (42%), Positives = 729/1165 (62%), Gaps = 46/1165 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  GIK
Sbjct: 4    PKFVHLRIHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L +L  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFAMQSVEFGDELTKLTVLAADNVGYKNLTLLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG A+  G   +A   A  +   FPD FY+E+ R  + +    
Sbjct: 122  TELAEGLIILSGGKSGEIGKALLKGNQKVAHECAEFYQTHFPDRFYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +  +  + LP+VAT+ +  L  + F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALEFSEQVELPVVATNDVVILDDSTFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y  RL+ E+E I  M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDDRLKIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  +         ++  +PL+D+ +++
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAREGKDPVAIESIPLDDQASFS 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDEQWQHDSLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++   L +LPP+IN   Y F   +  DG   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECLRM-KLKVLPPDINSGLYRFN--VNEDG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q  LF        +    Y KVP W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVPPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   +K   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDKYAELLEQDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYY--CINKSIKYE 1117
              AR  Y +  SV  + +    I  +   RF           +P  +YY  C     +  
Sbjct: 1073 GAAREKYARGLSVSIDES---QIDGQFFERFSQILEPHRAGTVPVHVYYQRC---DARAR 1126

Query: 1118 MKFPLNYKVQP----IDDLKLALIN 1138
            +     ++V P    +DDLK  L N
Sbjct: 1127 LTLGTEWRVTPSDALLDDLKQLLGN 1151


>gi|433658378|ref|YP_007275757.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus BB22OP]
 gi|432509066|gb|AGB10583.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus BB22OP]
          Length = 1159

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1161 (42%), Positives = 734/1161 (63%), Gaps = 48/1161 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L +L  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRTWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  GDIG A+  G   + E+    + + FPD FY+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I++A   +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ + E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRIESIPLEDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDD-----NNNLKEYLN-YVKVPSWSKKQ 945
              R  ++AS++ A+K A +     +Q   F   D      +  +E  N Y +VP W +K 
Sbjct: 893  PHRAAMMASLNDAVKAASQH----HQAEAFGQGDMFGVLTDAPEEVENKYTQVPPWPEKV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTY 1002
             L  E++ LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT 
Sbjct: 949  WLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTK 1008

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A +
Sbjct: 1009 RGTRIGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSARE 1068

Query: 1062 IFDINVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
            + D+  AR  Y +  SV       N  F      +IL   K    +P  +YY      + 
Sbjct: 1069 VMDLGSAREKYARGLSVSIDANQINDQF-FEQFSRILEPHKAGT-VPVNVYYQ-RADARA 1125

Query: 1117 EMKFPLNYKVQP----IDDLK 1133
             +     ++V P    IDDLK
Sbjct: 1126 RLTLGTEWRVTPSDTLIDDLK 1146


>gi|300923024|ref|ZP_07139091.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
 gi|300420651|gb|EFK03962.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
          Length = 1144

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAGMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|452744760|ref|ZP_21944601.1| DNA polymerase III subunit alpha [Mannheimia haemolytica serotype 6
            str. H23]
 gi|452087178|gb|EME03560.1| DNA polymerase III subunit alpha [Mannheimia haemolytica serotype 6
            str. H23]
          Length = 1158

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1128 (43%), Positives = 720/1128 (63%), Gaps = 38/1128 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++ AA +   A+ +TD  N  G++KFY  A   GIKP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKSLVKTAAANNMVAMGLTDFINFCGLVKFYGEALGAGIKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG DV++  E  N+    L LL KNN GY  + ++LSKAY      G  E   +  EWL
Sbjct: 65   IIGADVYVRTESGNEDYFELTLLAKNNKGYHNITQILSKAY----QQGYVEFPMVEREWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG  +GD+G A+       AE     + + +P++FY+ + R  + +  
Sbjct: 121  --AELNEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQYYPNHFYLSVCRTGRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I+Q +  +    +P+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+T+ EM KLF D+PSA+ NT+EIAKRC++ +  G+  LP FPT   ++  DFL+ KSK 
Sbjct: 239  FRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPT-GELSTEDFLVKKSKE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE    ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG+ AVSQI+TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL  A  
Sbjct: 418  AETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLEKAFA 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + LL  A T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FALLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPDP+      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+GKKK
Sbjct: 656  GKEEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI +   D     GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKI-VGFYDECMNMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  IEAI+  R K G F +LFD T R+D K INRR   SLI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P  L+EL+PT+     TVSGI+   ++  T RG
Sbjct: 950  DGERATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRG 1009

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I I  I+D S  +++ + ++  E   ++++++++++ +G V  D F   ++++A ++ 
Sbjct: 1010 SRIGIATIEDRSGKLDITLFSEALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVL 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYY 1108
             ++ AR  + K  ++  ++   +   +KK+  ++    +  LP   YY
Sbjct: 1070 SLDEARGRFAKSLALAISKEQLSADFIKKMTAIITPHKEGTLPLHFYY 1117


>gi|397169761|ref|ZP_10493191.1| DNA polymerase III subunit alpha [Alishewanella aestuarii B11]
 gi|396088656|gb|EJI86236.1| DNA polymerase III subunit alpha [Alishewanella aestuarii B11]
          Length = 1166

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1094 (43%), Positives = 705/1094 (64%), Gaps = 38/1094 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL +   +I+AAA    PALA+TD  N  G+++FY +A+  GIK
Sbjct: 4    PRFIHLRVHSDFSMVDGLAKTKPIIKAAAAQGMPALALTDQMNFCGLVRFYSTAHEAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+ + +   + SRLLLL  +N GY  L +L+SKAY+     G+ ++  +WL +
Sbjct: 64   PIIGVDCWVLHPLFPGESSRLLLLAADNAGYQNLTQLISKAYLRGHVDGKPQLEHDWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   G +G A+              + + F + FY+E+ R  +P+    
Sbjct: 124  --HSSGIIVLSGGKDGPLGKALLKENPHSVRALVDFYQQYFAERFYLELIRTNRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q+ + +A    LP+VAT+ + FLK  +F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LQKAVLLAETEQLPVVATNEVVFLKPEDFAAHEIRVAIHDGFTLDDKRRPKNYSAEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF D+P A++N++EIAKRCN+ +  G+  LP FPT   ++  D+L+ KS+ GL
Sbjct: 242  SSEEMAELFADLPEALENSVEIAKRCNVTIRLGEYFLPAFPT-GGLSDADYLVLKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RLL L+ D ++    +  Y +RLQ E++ I +M F GYFL+V +FIQW+K+N IPVGP
Sbjct: 301  EQRLLQLFPDEQVRAARRGEYDERLQIELDVINQMGFPGYFLVVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A KEE
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPTPG--MTLEQAFKEE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E   ++EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     +
Sbjct: 479  PRLPELYDSDEEVRDLIDMARRLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDEHGQNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+IL   +        K       +N +PL D  +Y 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTILQWAVNMANARLRKEGKPLVDINSIPLQDSKSYQ 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L +A+T AVFQLES+GMK++++  +PD FE++IAL++L+RPGP+   ++ NF  RK G 
Sbjct: 599  MLMRADTTAVFQLESRGMKDLIRRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKRGR 658

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 659  EEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYSLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA++ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++K HY
Sbjct: 719  EMAKQRDTFRDGAVQNGIDPELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +   L+++PP++N  +Y F     +  +   I 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVTLV-DECERMQLTLIPPDVNTGQYKF-----TVNEQGHIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF- 890
            YG+GAIKG G+  IEAI+  R + G F++LFDF  ++D K +N+R++  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQHGSFSDLFDFCAKVDLKRLNKRVMEKLILSGAMDRLG 892

Query: 891  ---------NEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVP 939
                       +R +L+A+++ A++ AE+  K   + Q  LF     +      +Y  VP
Sbjct: 893  PPLAKGQHAGPQRAILMANLEEAMRAAEQHAKAQAVGQDDLFGLLAADTDSSSSSYKLVP 952

Query: 940  SWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITEL 996
             W  +  L  E++ LG  L+ H    Y  E++ ++   L EL+PT    S  V+G++  +
Sbjct: 953  LWPDEIWLDGERETLGLYLTGHPINRYRDELKHYVNCRLVELQPTKKDQSIQVAGLVVSV 1012

Query: 997  KLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNI 1055
            ++    +G +  I+ +DD S  ++V    +  E  +++L+++ +L+V+G+V  D F   +
Sbjct: 1013 RVMINKKGRRWAIVTLDDKSARLDVRFFPEQLESFEHLLQKDRILVVTGQVSFDDFNGGL 1072

Query: 1056 RINAEKIFDINVAR 1069
             ++   + +I   R
Sbjct: 1073 TMSGRDVSEITAMR 1086


>gi|326794450|ref|YP_004312270.1| DNA polymerase III subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545214|gb|ADZ90434.1| DNA polymerase III, alpha subunit [Marinomonas mediterranea MMB-1]
          Length = 1156

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 732/1151 (63%), Gaps = 33/1151 (2%)

Query: 2    IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
            +  FIHLRLH+E+S++DGL+++  ++        PA+AITD +NL G ++FYK A +KGI
Sbjct: 1    MSSFIHLRLHTEFSLVDGLVKVKGLLGETEAQKMPAVAITDENNLCGFVRFYKGAMDKGI 60

Query: 62   KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLE 121
            KPI G DV +  + E +  +RL LL  +N GY  + E++SK Y    + GR  ++  W+E
Sbjct: 61   KPICGADVILEEQGEVEVRTRLTLLAMSNKGYKNVIEVISKGYQLGQHEGRPIVQRAWVE 120

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
            +  + + +IALSG   GDIG  +   + + A+ +   W  +FPD FY+E++R  +     
Sbjct: 121  E--HSEDVIALSGGVQGDIGFLLSKYKTEEAKKYLDYWMSVFPDRFYLEMERTARAGEED 178

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             I   I +AS  + P+VAT+ ++FLKK +F AHE R CI +   L + +R +++++EQ F
Sbjct: 179  YIHTVIPLASEASCPVVATNDVRFLKKEDFEAHEARVCIHDSVTLDDPRRKRRYSEEQYF 238

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            K+ +EM  +F DIP A++NT+EIAKRCN+ +  GK  LP +P P  + ++DF    S  G
Sbjct: 239  KSAAEMEAVFEDIPEALENTVEIAKRCNVDVLLGKYFLPDYPVPDGMTMDDFFNELSHKG 298

Query: 302  LKKRLLNLYK-DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            L+ RL  L K D +     +  Y  RL FE+  I +M F GYFLIV DFIQWAK+N IPV
Sbjct: 299  LQDRLEVLIKKDGDRIANRRQEYLDRLDFELNIINQMGFPGYFLIVMDFIQWAKDNDIPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC E RD+VI YV
Sbjct: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMENRDKVIDYV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG+DAVSQI+TFG MAAK  +RDV RV    YS  D +SKLIPF+ G  +TL  A++
Sbjct: 419  ARTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIG--MTLKKALE 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            EEP L E I+ +EE   ++E+A  +EG++RN G HAGGV+IAP+KL +F PLY +E  +G
Sbjct: 477  EEPALVEFIEGDEEAADVMEMAFSLEGVVRNFGKHAGGVVIAPTKLTDFAPLYCEEDGSG 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDT 598
            +++QYDK+D+EE GL+KFDFLGL TL+++D  +  I  ++ K     L+   + L DK T
Sbjct: 537  LVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWALGNINALHAKEGKPPLDIALIDLEDKST 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKH 656
            Y+LL++A T AVFQLES+GMK ++K+  P  FE+IIAL++LYRPGP+   ++ +F  RKH
Sbjct: 597  YDLLQRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLGSGMVDDFINRKH 656

Query: 657  GE---YFNYPDPRTKD---VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G     F +PD +  D   VL  TYGI++YQEQVMQIAQ+L  +SLG ADLLRRA+GKKK
Sbjct: 657  GRAELAFPHPDYQHDDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGGADLLRRAMGKKK 716

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
               M E R  F  GA K  + K     IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK 
Sbjct: 717  PEVMAEQRLIFMEGAAKNNIDKDLGGNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKN 776

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA LS  M +T+KI I +++  +   L++  PN+N S Y F     +  +   
Sbjct: 777  HYPAPFMAAVLSADMQNTDKIVIFIEEC-RAMKLTLELPNVNESVYKF-----TVNEAGA 830

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
            + YGLGAIKG G+  IEAIV  R+ G F ++FDF +R+ +K +N+R++ +L+ SGAFD  
Sbjct: 831  VVYGLGAIKGVGEGPIEAIVEARQDGPFEHIFDFCQRVGRK-VNKRVMEALVRSGAFDTI 889

Query: 891  NEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVP-SWSKKQEL 947
               R  L ASID ALK A++  K      + LF      + +   + + +   W+ +Q L
Sbjct: 890  GPNRATLFASIDEALKRADQNAKNEDAGMMDLFGVAVEESTENAYDEIGIQHEWAGRQRL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV-SGIITELKLKTTYR-GK 1005
              EK  LG  ++ H    YE E+R+F+   + +++P     V +G+I ++++  + R G 
Sbjct: 950  DGEKDTLGLYVTGHPIDDYEKELRRFVRSRIVDIQPKRDTQVLAGLIVDMRVTKSKRGGN 1009

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I  + +DD S  +EV +    YE  K+++  +E+++V G+V  D F    ++ A  +  +
Sbjct: 1010 IAFMTLDDRSARIEVTVFPDNYETFKSVMLADEVVVVEGEVSIDEFRGGQKVIARNVLSM 1069

Query: 1066 NVARILYGKKFSVMFNRT----FNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
              AR+ Y +   + +  T     +I+ L + +  +K  +G   V+ +  ++++  +++  
Sbjct: 1070 AQARVRYVEALRIDWKETNITPSDIAQLAQKMAPYKG-DGCDVVIGFDTDQALG-DVRLG 1127

Query: 1122 LNYKVQPIDDL 1132
              +K++P D+L
Sbjct: 1128 PAWKIRPDDEL 1138


>gi|417705678|ref|ZP_12354753.1| DNA polymerase III subunit alpha [Shigella flexneri VA-6]
 gi|417726532|ref|ZP_12375282.1| DNA polymerase III subunit alpha [Shigella flexneri K-671]
 gi|417826198|ref|ZP_12472780.1| DNA polymerase III, &alpha subunit [Shigella flexneri J1713]
 gi|332765033|gb|EGJ95261.1| DNA polymerase III subunit alpha [Shigella flexneri K-671]
 gi|333010679|gb|EGK30112.1| DNA polymerase III subunit alpha [Shigella flexneri VA-6]
 gi|335578385|gb|EGM63603.1| DNA polymerase III, &alpha subunit [Shigella flexneri J1713]
          Length = 1144

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|389736295|ref|ZP_10189863.1| DNA polymerase III subunit alpha [Rhodanobacter sp. 115]
 gi|388439575|gb|EIL96102.1| DNA polymerase III subunit alpha [Rhodanobacter sp. 115]
          Length = 1191

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1190 (41%), Positives = 725/1190 (60%), Gaps = 65/1190 (5%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M  +F+H  LHSE+S++D  +RI  ++ A      PA+A+TD SN+F ++KFYK+    G
Sbjct: 1    MSARFVHTHLHSEFSLVDSTIRIKALVGACVRAGMPAVALTDDSNMFALVKFYKACNAAG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKP+ G D+WI+   ++ +P RL +L ++  GYL L  L+S+A+ +    GRA +   WL
Sbjct: 61   IKPLCGSDLWISAP-DDPRPWRLTVLCQHREGYLNLSRLVSRAWRDGQQGGRALVDAGWL 119

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  DGLIAL G       IAV  G  + A    R  +++FPD  Y+E+ R  +    
Sbjct: 120  TP-QASDGLIALLGRESEVARIAVNQG-TEAALAKLRPLARLFPDRLYLELTRCGREGEE 177

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
                  + +A+ ++LP++A++  +FL + +F AHE R CI +G +L++ KR + ++ +Q 
Sbjct: 178  SWNTAALALATELDLPVIASNDARFLTRDDFEAHEARVCINQGRVLADPKRPRSYSNQQY 237

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT +EM +LF D+P A++NT+E+AKRCNL+L FG   LP FP P+  +++  +   ++ 
Sbjct: 238  LKTPAEMAELFADLPEALENTLELAKRCNLELSFGTYYLPDFPVPEGHDLDSHIRELARA 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GLK+RL N    P         Y  RL+ E++ IIKM F GYFLIV+DFI W+K + IPV
Sbjct: 298  GLKERLANA---PLAANHTLADYHARLERELDVIIKMGFPGYFLIVADFINWSKQHGIPV 354

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVA+ L ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI YV
Sbjct: 355  GPGRGSGAGSLVAWVLKITDLDPLQFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYV 414

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI- 479
              +YG+D VSQI+T+G+MAAK  +RD GRVL + Y   D ++KLIP +P  L TL++A+ 
Sbjct: 415  ARKYGRDHVSQIITYGSMAAKAVLRDSGRVLGMGYGQVDKLAKLIPARPLDL-TLTDALG 473

Query: 480  -----KEEP-----QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINF 529
                 K+E      +  E  + +E+ R LI+LA ++E + RNVG HAGGV+I P  L  F
Sbjct: 474  RSEKSKKETDRVVKEFCEVYEQDEDARTLIDLALKLENLTRNVGKHAGGVVIGPKPLTEF 533

Query: 530  CPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFS 587
             PLY + G  G+++QYDK+D+E++GL+KFDFLGL TL+I+D  +  I  ++  T      
Sbjct: 534  APLYCEPGGGGVVTQYDKNDVEDVGLVKFDFLGLRTLTIIDWAVKAINARRAQTGEEMLD 593

Query: 588  LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
            +  LPL+D  +Y+LLKKA TVAVFQLES GM+ MLK+AKPD F +IIAL++LYRPGPMDL
Sbjct: 594  IAALPLDDSASYDLLKKAQTVAVFQLESSGMQRMLKDAKPDRFGDIIALVALYRPGPMDL 653

Query: 648  IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
            I +F  RKHG E   YPDPR + +L ETYGIMVYQEQVMQ+AQI+GGY+LG ADLLRRA+
Sbjct: 654  IPSFIARKHGKEEVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYTLGGADLLRRAM 713

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM++HR  F+ GA K GLS  KA+ IF+ +EKFAGYGFNKSHA AYAL+SY TA
Sbjct: 714  GKKKVEEMVKHRAIFREGAAKDGLSGDKADSIFDLMEKFAGYGFNKSHAAAYALVSYQTA 773

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD- 825
            +LK HY + FMAA +S  MD+T+K    + +A    G+ +LPP++N S Y F  +  +  
Sbjct: 774  WLKAHYPAEFMAATISSDMDNTDKAVTFIDEA-SAIGIEVLPPDVNTSDYMFVAMDPAGV 832

Query: 826  ----GKHKK-IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIIN 879
                GK  + IRYGLGAIKG G+   E+IV ER + G + +L DF +R+D   +NRR++ 
Sbjct: 833  TPVAGKGAQTIRYGLGAIKGVGQGACESIVQERQRTGAYKDLADFCRRVDSTKLNRRVLE 892

Query: 880  SLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKV- 938
            +L+ SGA D     R  L+  +  A+K AE+  +  +Q +   +     +    + V++ 
Sbjct: 893  ALVLSGALDALAPNRASLMLQLPNAIKAAEQYSR--DQQAGQNDMFGAAMGAAQSVVQID 950

Query: 939  ----PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------------- 981
                P W  +Q+L  E+  LG  LS H    +  E+ Q     L E+             
Sbjct: 951  LPTAPDWPLEQKLQGERDTLGHYLSGHPTDPWREELAQLSTCPLGEIGERYQPPRPRKND 1010

Query: 982  ---------KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKN 1032
                      P    TV+G+++ ++ +         + ++D S  +EV    +LY++   
Sbjct: 1011 NDDGNRFRRGPDTPWTVAGMVSAVRKRGDSDA---FVRLEDGSGIIEVSFFGELYQQAAP 1067

Query: 1033 ILKENELLIVSGKVLEDRFL-KNIRINAEKIFDINVARILYGKKFSVMFNRTFN--ISIL 1089
            +L  +E+L+V G +  D F     ++ A  +  +  A     +   +  N      + +L
Sbjct: 1068 LLVRDEILVVEGGLRIDEFSGGGFQLRARNVVTLGDACRRRARLLHLKLNGIGPDFVQLL 1127

Query: 1090 KKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
            ++ L  ++  +    VL    N++ +  ++   ++ V  I DL  A+ NL
Sbjct: 1128 RQTLAGYRGGHA-SVVLGDYHNQNAQATLELGEDWHVDAIPDLLRAVRNL 1176


>gi|414574374|ref|ZP_11431589.1| DNA polymerase III subunit alpha [Shigella sonnei 3233-85]
 gi|415849998|ref|ZP_11527030.1| DNA polymerase III subunit alpha [Shigella sonnei 53G]
 gi|323165885|gb|EFZ51667.1| DNA polymerase III subunit alpha [Shigella sonnei 53G]
 gi|391290259|gb|EIQ48734.1| DNA polymerase III subunit alpha [Shigella sonnei 3233-85]
          Length = 1144

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++    +      +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEAHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|325576846|ref|ZP_08147461.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus
            parainfluenzae ATCC 33392]
 gi|325161052|gb|EGC73170.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus
            parainfluenzae ATCC 33392]
          Length = 1159

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1169 (42%), Positives = 740/1169 (63%), Gaps = 45/1169 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+IDG+ ++  +++A A D   ALA+TD +N  G+++FY    + GIK
Sbjct: 5    PRFVHLRTHTDFSMIDGIAKVKPLVKACAADNMVALALTDFTNFCGVVRFYGETLSSGIK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE---NINYGRAEIRIEW 119
            PIIG DV + +++  ++   L LL KNN GY  +  LLSKAY     ++ Y    I  EW
Sbjct: 65   PIIGADVHVKSDLCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGYVDLPY----IDREW 120

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L   ++++G+I LSG   GDI   +    +  AE+    + + F D+FY+ + R  +P+ 
Sbjct: 121  L--IEHREGVIILSGGTQGDIAKKLLKENSSEAESAVSFYQEFFSDHFYLSLSRTGRPDE 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K++T++Q
Sbjct: 179  ERYIQAALKLAEEHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDPKRPKRYTEQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF DIPSA++NT+ IA+RCN+ L  G+  LP+FPT   ++  D+L+ K+K
Sbjct: 239  YFRSEEEMCDLFADIPSALENTVLIAQRCNVTLRLGQYFLPQFPT-GELSTEDYLVMKAK 297

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 298  EGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK+IP  PG  +TL  A 
Sbjct: 418  VADTYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPPDPG--MTLDKAF 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+PS + +F PLY      
Sbjct: 476  EAEPQLQVAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITDFAPLYCDNEGL 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
              ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  IN +          +  +PL+
Sbjct: 536  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINARLAREGKPPVDIAAIPLD 592

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D +++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF 
Sbjct: 593  DPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFI 652

Query: 653  RRKHG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+
Sbjct: 653  DRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAM 712

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 713  GKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTH+ + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  
Sbjct: 773  WLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINVGKHHF-----SVN 826

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
            ++ +I YG+GAIKG G+  I+A++T R + G F +LFD   R+D K INRR   SLI SG
Sbjct: 827  ENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESLIMSG 886

Query: 886  AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
            AFD     R  L  +++ ALK +++  K   + Q  +F      + +    Y   P +++
Sbjct: 887  AFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQADMFGVLTETHEEVENAYAHTPPYTE 946

Query: 944  KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
            KQ L  E++ LG  LS H    Y  E+  +    L +L P       T +G++   +  T
Sbjct: 947  KQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQISTAAGLLVSTRFAT 1006

Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
            T +G +I I  IDD S  +++ +  +  ++    L+++ +++VSG+V  D F   ++++ 
Sbjct: 1007 TKKGNRIGIATIDDRSGRLDLTLFGESLDQFGEKLQKDTVVVVSGQVSFDDFSGGLKMSV 1066

Query: 1060 EKIFDINVARILYGKKFSVMFN-RTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKY 1116
              +  ++ AR  Y K  ++  +    + S +KK+  +L       LP  +YY   K  + 
Sbjct: 1067 RDLMTLDEARSRYAKSLAISLSEEQISPSFIKKLKEMLDPVSGGTLPINVYYQSAKG-RA 1125

Query: 1117 EMKFPLNYKVQPIDDLKLALINLGLYNAI 1145
             ++  + + + P D++   L+NL   NA+
Sbjct: 1126 LLRLGIQWSITPTDEILTELVNLLGENAV 1154


>gi|419048760|ref|ZP_13595681.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3B]
 gi|419066223|ref|ZP_13612913.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3E]
 gi|419078458|ref|ZP_13623946.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4A]
 gi|419090157|ref|ZP_13635479.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4C]
 gi|420267426|ref|ZP_14769837.1| DNA polymerase III subunit alpha [Escherichia coli PA22]
 gi|420273157|ref|ZP_14775492.1| DNA polymerase III subunit alpha [Escherichia coli PA40]
 gi|420284544|ref|ZP_14786764.1| DNA polymerase III subunit alpha [Escherichia coli TW10246]
 gi|421810332|ref|ZP_16246152.1| DNA polymerase III subunit alpha [Escherichia coli 8.0416]
 gi|421816404|ref|ZP_16251977.1| DNA polymerase III subunit alpha [Escherichia coli 10.0821]
 gi|423652550|ref|ZP_17627954.1| DNA polymerase III subunit alpha [Escherichia coli PA31]
 gi|424081196|ref|ZP_17818103.1| DNA polymerase III subunit alpha [Escherichia coli FDA517]
 gi|424087872|ref|ZP_17824174.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1996]
 gi|424100495|ref|ZP_17835704.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1990]
 gi|424107321|ref|ZP_17841942.1| DNA polymerase III subunit alpha [Escherichia coli 93-001]
 gi|424113294|ref|ZP_17847493.1| DNA polymerase III subunit alpha [Escherichia coli PA3]
 gi|424119422|ref|ZP_17853181.1| DNA polymerase III subunit alpha [Escherichia coli PA5]
 gi|424125639|ref|ZP_17858881.1| DNA polymerase III subunit alpha [Escherichia coli PA9]
 gi|424131646|ref|ZP_17864502.1| DNA polymerase III subunit alpha [Escherichia coli PA10]
 gi|424138259|ref|ZP_17870601.1| DNA polymerase III subunit alpha [Escherichia coli PA14]
 gi|424459536|ref|ZP_17910544.1| DNA polymerase III subunit alpha [Escherichia coli PA39]
 gi|424465998|ref|ZP_17916235.1| DNA polymerase III subunit alpha [Escherichia coli PA41]
 gi|424484594|ref|ZP_17933513.1| DNA polymerase III subunit alpha [Escherichia coli TW09098]
 gi|424517878|ref|ZP_17962352.1| DNA polymerase III subunit alpha [Escherichia coli TW14301]
 gi|424523705|ref|ZP_17967772.1| DNA polymerase III subunit alpha [Escherichia coli EC4421]
 gi|424529912|ref|ZP_17973581.1| DNA polymerase III subunit alpha [Escherichia coli EC4422]
 gi|424535883|ref|ZP_17979191.1| DNA polymerase III subunit alpha [Escherichia coli EC4013]
 gi|424541770|ref|ZP_17984655.1| DNA polymerase III subunit alpha [Escherichia coli EC4402]
 gi|424548095|ref|ZP_17990357.1| DNA polymerase III subunit alpha [Escherichia coli EC4439]
 gi|424554384|ref|ZP_17996152.1| DNA polymerase III subunit alpha [Escherichia coli EC4436]
 gi|424572939|ref|ZP_18013410.1| DNA polymerase III subunit alpha [Escherichia coli EC1845]
 gi|424584766|ref|ZP_18024386.1| DNA polymerase III subunit alpha [Escherichia coli EC1863]
 gi|425095580|ref|ZP_18498640.1| DNA polymerase III subunit alpha [Escherichia coli 3.4870]
 gi|425107522|ref|ZP_18509807.1| DNA polymerase III subunit alpha [Escherichia coli 6.0172]
 gi|425147925|ref|ZP_18547862.1| DNA polymerase III subunit alpha [Escherichia coli 88.0221]
 gi|425153539|ref|ZP_18553126.1| DNA polymerase III subunit alpha [Escherichia coli PA34]
 gi|425160001|ref|ZP_18559211.1| DNA polymerase III subunit alpha [Escherichia coli FDA506]
 gi|425165516|ref|ZP_18564359.1| DNA polymerase III subunit alpha [Escherichia coli FDA507]
 gi|425171802|ref|ZP_18570239.1| DNA polymerase III subunit alpha [Escherichia coli FDA504]
 gi|425177603|ref|ZP_18575690.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1999]
 gi|425190561|ref|ZP_18587720.1| DNA polymerase III subunit alpha [Escherichia coli NE1487]
 gi|425196859|ref|ZP_18593551.1| DNA polymerase III subunit alpha [Escherichia coli NE037]
 gi|425203555|ref|ZP_18599717.1| DNA polymerase III subunit alpha [Escherichia coli FRIK2001]
 gi|425209330|ref|ZP_18605102.1| DNA polymerase III subunit alpha [Escherichia coli PA4]
 gi|425240462|ref|ZP_18634131.1| DNA polymerase III subunit alpha [Escherichia coli MA6]
 gi|425252331|ref|ZP_18645250.1| DNA polymerase III subunit alpha [Escherichia coli CB7326]
 gi|425292163|ref|ZP_18682801.1| DNA polymerase III subunit alpha [Escherichia coli PA38]
 gi|425308942|ref|ZP_18698454.1| DNA polymerase III subunit alpha [Escherichia coli EC1735]
 gi|425314869|ref|ZP_18703987.1| DNA polymerase III subunit alpha [Escherichia coli EC1736]
 gi|425327106|ref|ZP_18715378.1| DNA polymerase III subunit alpha [Escherichia coli EC1846]
 gi|425333295|ref|ZP_18721064.1| DNA polymerase III subunit alpha [Escherichia coli EC1847]
 gi|425339715|ref|ZP_18726996.1| DNA polymerase III subunit alpha [Escherichia coli EC1848]
 gi|425345592|ref|ZP_18732440.1| DNA polymerase III subunit alpha [Escherichia coli EC1849]
 gi|425370342|ref|ZP_18755348.1| DNA polymerase III subunit alpha [Escherichia coli EC1864]
 gi|425389194|ref|ZP_18772728.1| DNA polymerase III subunit alpha [Escherichia coli EC1866]
 gi|425395962|ref|ZP_18779042.1| DNA polymerase III subunit alpha [Escherichia coli EC1869]
 gi|425408118|ref|ZP_18790310.1| DNA polymerase III subunit alpha [Escherichia coli EC1870]
 gi|428944543|ref|ZP_19017235.1| DNA polymerase III subunit alpha [Escherichia coli 88.1467]
 gi|428962931|ref|ZP_19034152.1| DNA polymerase III subunit alpha [Escherichia coli 90.0091]
 gi|428969009|ref|ZP_19039676.1| DNA polymerase III subunit alpha [Escherichia coli 90.0039]
 gi|428987519|ref|ZP_19056846.1| DNA polymerase III subunit alpha [Escherichia coli 93.0056]
 gi|429005658|ref|ZP_19073627.1| DNA polymerase III subunit alpha [Escherichia coli 95.1288]
 gi|429012020|ref|ZP_19079309.1| DNA polymerase III subunit alpha [Escherichia coli 95.0943]
 gi|429018253|ref|ZP_19085069.1| DNA polymerase III subunit alpha [Escherichia coli 96.0428]
 gi|429023902|ref|ZP_19090353.1| DNA polymerase III subunit alpha [Escherichia coli 96.0427]
 gi|429030205|ref|ZP_19096114.1| DNA polymerase III subunit alpha [Escherichia coli 96.0939]
 gi|429036359|ref|ZP_19101838.1| DNA polymerase III subunit alpha [Escherichia coli 96.0932]
 gi|429042323|ref|ZP_19107361.1| DNA polymerase III subunit alpha [Escherichia coli 96.0107]
 gi|429048163|ref|ZP_19112831.1| DNA polymerase III subunit alpha [Escherichia coli 97.0003]
 gi|429053525|ref|ZP_19118041.1| DNA polymerase III subunit alpha [Escherichia coli 97.1742]
 gi|429059227|ref|ZP_19123397.1| DNA polymerase III subunit alpha [Escherichia coli 97.0007]
 gi|429064607|ref|ZP_19128507.1| DNA polymerase III subunit alpha [Escherichia coli 99.0672]
 gi|429071227|ref|ZP_19134595.1| DNA polymerase III subunit alpha [Escherichia coli 99.0678]
 gi|429830040|ref|ZP_19360957.1| DNA polymerase III subunit alpha [Escherichia coli 97.0010]
 gi|444922384|ref|ZP_21242148.1| DNA polymerase III subunit alpha [Escherichia coli 09BKT078844]
 gi|444945091|ref|ZP_21263529.1| DNA polymerase III subunit alpha [Escherichia coli 99.0839]
 gi|444950791|ref|ZP_21269035.1| DNA polymerase III subunit alpha [Escherichia coli 99.0848]
 gi|444961574|ref|ZP_21279347.1| DNA polymerase III subunit alpha [Escherichia coli 99.1775]
 gi|444972833|ref|ZP_21290137.1| DNA polymerase III subunit alpha [Escherichia coli 99.1805]
 gi|444978341|ref|ZP_21295349.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 700728]
 gi|444988905|ref|ZP_21305656.1| DNA polymerase III subunit alpha [Escherichia coli PA19]
 gi|444999735|ref|ZP_21316210.1| DNA polymerase III subunit alpha [Escherichia coli PA2]
 gi|445016137|ref|ZP_21332198.1| DNA polymerase III subunit alpha [Escherichia coli PA8]
 gi|445021609|ref|ZP_21337543.1| DNA polymerase III subunit alpha [Escherichia coli 7.1982]
 gi|445032326|ref|ZP_21347964.1| DNA polymerase III subunit alpha [Escherichia coli 99.1762]
 gi|445038022|ref|ZP_21353505.1| DNA polymerase III subunit alpha [Escherichia coli PA35]
 gi|445043193|ref|ZP_21358542.1| DNA polymerase III subunit alpha [Escherichia coli 3.4880]
 gi|445048845|ref|ZP_21364028.1| DNA polymerase III subunit alpha [Escherichia coli 95.0083]
 gi|377902954|gb|EHU67253.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3B]
 gi|377921284|gb|EHU85284.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC3E]
 gi|377934976|gb|EHU98801.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4A]
 gi|377950864|gb|EHV14485.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC4C]
 gi|390651577|gb|EIN29848.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1996]
 gi|390654261|gb|EIN32314.1| DNA polymerase III subunit alpha [Escherichia coli FDA517]
 gi|390671019|gb|EIN47507.1| DNA polymerase III subunit alpha [Escherichia coli 93-001]
 gi|390674940|gb|EIN51105.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1990]
 gi|390690057|gb|EIN64959.1| DNA polymerase III subunit alpha [Escherichia coli PA3]
 gi|390693851|gb|EIN68468.1| DNA polymerase III subunit alpha [Escherichia coli PA9]
 gi|390694813|gb|EIN69371.1| DNA polymerase III subunit alpha [Escherichia coli PA5]
 gi|390709636|gb|EIN82718.1| DNA polymerase III subunit alpha [Escherichia coli PA10]
 gi|390715211|gb|EIN88078.1| DNA polymerase III subunit alpha [Escherichia coli PA14]
 gi|390721815|gb|EIN94509.1| DNA polymerase III subunit alpha [Escherichia coli PA22]
 gi|390753327|gb|EIO23050.1| DNA polymerase III subunit alpha [Escherichia coli PA31]
 gi|390763446|gb|EIO32695.1| DNA polymerase III subunit alpha [Escherichia coli PA40]
 gi|390777326|gb|EIO45170.1| DNA polymerase III subunit alpha [Escherichia coli PA41]
 gi|390788125|gb|EIO55595.1| DNA polymerase III subunit alpha [Escherichia coli PA39]
 gi|390796332|gb|EIO63608.1| DNA polymerase III subunit alpha [Escherichia coli TW10246]
 gi|390824958|gb|EIO90907.1| DNA polymerase III subunit alpha [Escherichia coli TW09098]
 gi|390856521|gb|EIP19101.1| DNA polymerase III subunit alpha [Escherichia coli TW14301]
 gi|390861482|gb|EIP23730.1| DNA polymerase III subunit alpha [Escherichia coli EC4421]
 gi|390872611|gb|EIP33900.1| DNA polymerase III subunit alpha [Escherichia coli EC4422]
 gi|390877821|gb|EIP38716.1| DNA polymerase III subunit alpha [Escherichia coli EC4013]
 gi|390887267|gb|EIP47251.1| DNA polymerase III subunit alpha [Escherichia coli EC4402]
 gi|390888940|gb|EIP48722.1| DNA polymerase III subunit alpha [Escherichia coli EC4439]
 gi|390896363|gb|EIP55753.1| DNA polymerase III subunit alpha [Escherichia coli EC4436]
 gi|390914309|gb|EIP72853.1| DNA polymerase III subunit alpha [Escherichia coli EC1863]
 gi|390926757|gb|EIP84316.1| DNA polymerase III subunit alpha [Escherichia coli EC1845]
 gi|408087424|gb|EKH20873.1| DNA polymerase III subunit alpha [Escherichia coli PA34]
 gi|408092029|gb|EKH25228.1| DNA polymerase III subunit alpha [Escherichia coli FDA506]
 gi|408097769|gb|EKH30652.1| DNA polymerase III subunit alpha [Escherichia coli FDA507]
 gi|408103950|gb|EKH36279.1| DNA polymerase III subunit alpha [Escherichia coli FDA504]
 gi|408111378|gb|EKH43129.1| DNA polymerase III subunit alpha [Escherichia coli FRIK1999]
 gi|408123182|gb|EKH53984.1| DNA polymerase III subunit alpha [Escherichia coli NE1487]
 gi|408131360|gb|EKH61402.1| DNA polymerase III subunit alpha [Escherichia coli NE037]
 gi|408133100|gb|EKH63017.1| DNA polymerase III subunit alpha [Escherichia coli FRIK2001]
 gi|408142295|gb|EKH71676.1| DNA polymerase III subunit alpha [Escherichia coli PA4]
 gi|408173861|gb|EKI00864.1| DNA polymerase III subunit alpha [Escherichia coli MA6]
 gi|408188050|gb|EKI13939.1| DNA polymerase III subunit alpha [Escherichia coli CB7326]
 gi|408234543|gb|EKI57556.1| DNA polymerase III subunit alpha [Escherichia coli PA38]
 gi|408240877|gb|EKI63528.1| DNA polymerase III subunit alpha [Escherichia coli EC1735]
 gi|408250345|gb|EKI72205.1| DNA polymerase III subunit alpha [Escherichia coli EC1736]
 gi|408260972|gb|EKI82021.1| DNA polymerase III subunit alpha [Escherichia coli EC1846]
 gi|408269582|gb|EKI89827.1| DNA polymerase III subunit alpha [Escherichia coli EC1847]
 gi|408271496|gb|EKI91623.1| DNA polymerase III subunit alpha [Escherichia coli EC1848]
 gi|408280456|gb|EKJ00009.1| DNA polymerase III subunit alpha [Escherichia coli EC1849]
 gi|408302078|gb|EKJ19627.1| DNA polymerase III subunit alpha [Escherichia coli EC1864]
 gi|408303302|gb|EKJ20768.1| DNA polymerase III subunit alpha [Escherichia coli EC1866]
 gi|408320303|gb|EKJ36406.1| DNA polymerase III subunit alpha [Escherichia coli EC1870]
 gi|408332544|gb|EKJ47579.1| DNA polymerase III subunit alpha [Escherichia coli EC1869]
 gi|408560988|gb|EKK37236.1| DNA polymerase III subunit alpha [Escherichia coli 3.4870]
 gi|408561605|gb|EKK37808.1| DNA polymerase III subunit alpha [Escherichia coli 6.0172]
 gi|408606398|gb|EKK79845.1| DNA polymerase III subunit alpha [Escherichia coli 8.0416]
 gi|408613555|gb|EKK86843.1| DNA polymerase III subunit alpha [Escherichia coli 88.0221]
 gi|408618398|gb|EKK91485.1| DNA polymerase III subunit alpha [Escherichia coli 10.0821]
 gi|427219582|gb|EKV88544.1| DNA polymerase III subunit alpha [Escherichia coli 88.1467]
 gi|427235326|gb|EKW02948.1| DNA polymerase III subunit alpha [Escherichia coli 90.0039]
 gi|427238038|gb|EKW05560.1| DNA polymerase III subunit alpha [Escherichia coli 90.0091]
 gi|427252418|gb|EKW18907.1| DNA polymerase III subunit alpha [Escherichia coli 93.0056]
 gi|427271765|gb|EKW36556.1| DNA polymerase III subunit alpha [Escherichia coli 95.0943]
 gi|427278562|gb|EKW43019.1| DNA polymerase III subunit alpha [Escherichia coli 95.1288]
 gi|427287326|gb|EKW51094.1| DNA polymerase III subunit alpha [Escherichia coli 96.0428]
 gi|427293446|gb|EKW56700.1| DNA polymerase III subunit alpha [Escherichia coli 96.0427]
 gi|427295024|gb|EKW58178.1| DNA polymerase III subunit alpha [Escherichia coli 96.0939]
 gi|427305724|gb|EKW68318.1| DNA polymerase III subunit alpha [Escherichia coli 97.0003]
 gi|427307907|gb|EKW70331.1| DNA polymerase III subunit alpha [Escherichia coli 96.0932]
 gi|427312377|gb|EKW74533.1| DNA polymerase III subunit alpha [Escherichia coli 96.0107]
 gi|427322889|gb|EKW84510.1| DNA polymerase III subunit alpha [Escherichia coli 97.1742]
 gi|427323610|gb|EKW85171.1| DNA polymerase III subunit alpha [Escherichia coli 97.0007]
 gi|427335933|gb|EKW96962.1| DNA polymerase III subunit alpha [Escherichia coli 99.0678]
 gi|427337390|gb|EKW98308.1| DNA polymerase III subunit alpha [Escherichia coli 99.0672]
 gi|429262297|gb|EKY45640.1| DNA polymerase III subunit alpha [Escherichia coli 97.0010]
 gi|444552214|gb|ELV30057.1| DNA polymerase III subunit alpha [Escherichia coli 09BKT078844]
 gi|444566056|gb|ELV42892.1| DNA polymerase III subunit alpha [Escherichia coli 99.0839]
 gi|444573033|gb|ELV49434.1| DNA polymerase III subunit alpha [Escherichia coli 99.0848]
 gi|444586571|gb|ELV62069.1| DNA polymerase III subunit alpha [Escherichia coli 99.1775]
 gi|444601127|gb|ELV75936.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 700728]
 gi|444610070|gb|ELV84506.1| DNA polymerase III subunit alpha [Escherichia coli 99.1805]
 gi|444616599|gb|ELV90761.1| DNA polymerase III subunit alpha [Escherichia coli PA19]
 gi|444625236|gb|ELV99107.1| DNA polymerase III subunit alpha [Escherichia coli PA2]
 gi|444639405|gb|ELW12724.1| DNA polymerase III subunit alpha [Escherichia coli PA8]
 gi|444649200|gb|ELW22106.1| DNA polymerase III subunit alpha [Escherichia coli 7.1982]
 gi|444655388|gb|ELW28007.1| DNA polymerase III subunit alpha [Escherichia coli 99.1762]
 gi|444664566|gb|ELW36754.1| DNA polymerase III subunit alpha [Escherichia coli PA35]
 gi|444668849|gb|ELW40849.1| DNA polymerase III subunit alpha [Escherichia coli 3.4880]
 gi|444673748|gb|ELW45374.1| DNA polymerase III subunit alpha [Escherichia coli 95.0083]
          Length = 1144

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 724/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|940886|gb|AAC44578.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706]
          Length = 1159

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1105 (43%), Positives = 714/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L LL KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G++G A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E++ I +M F GYFL+V +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLVVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PELKELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L   YGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPPYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S T +G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTAAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRLEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|157147384|ref|YP_001454703.1| DNA polymerase III subunit alpha [Citrobacter koseri ATCC BAA-895]
 gi|157084589|gb|ABV14267.1| hypothetical protein CKO_03182 [Citrobacter koseri ATCC BAA-895]
          Length = 1144

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1138 (43%), Positives = 720/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +    
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIKPIVGADFHVRGTP 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               +  +L +L  NN GY  L  L+SKAY          I  EWL   + +DGLI LSG 
Sbjct: 61   LGDELCQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDREWL--TELKDGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + F D +Y+E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFSDRYYLELIRTGRQDEETYLHAAVELAETRGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+   +F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFINSEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDEMCELFSDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ KSK GL++RL  L+ D  +
Sbjct: 239  EALENSVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDFLVKKSKEGLEERLEFLFPDEAV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK+D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I     K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  RKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIY-LSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  Y L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|420361735|ref|ZP_14862667.1| DNA polymerase III, &alpha subunit [Shigella sonnei 4822-66]
 gi|391297318|gb|EIQ55372.1| DNA polymerase III, &alpha subunit [Shigella sonnei 4822-66]
          Length = 1144

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVIVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++    +      +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEAHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|424033756|ref|ZP_17773167.1| DNA polymerase III subunit alpha [Vibrio cholerae HENC-01]
 gi|408873869|gb|EKM13052.1| DNA polymerase III subunit alpha [Vibrio cholerae HENC-01]
          Length = 1159

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1155 (42%), Positives = 734/1155 (63%), Gaps = 36/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L LL  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTLLAADNEGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +G+I LSGA  G+IG A+  G   + E+    + + FPD FY+E+ R  + +    
Sbjct: 122  AELSEGVIVLSGAKNGEIGKALLKGNRKVVESCVAFYQEYFPDRFYLELVRTGRSDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A    LP+VAT+ + FL +  F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LHFAIELAEETQLPVVATNEVVFLSEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTKTTN-FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  +  +   +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  +F    +   +    Y +VP+W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV  + +  N    ++   +L       +P  +YY      +  +    
Sbjct: 1073 GTAREKYARGLSVSIDAKQINDKFFEQFTRILEPHKAGTVPVNVYYQ-RADARARLTLGT 1131

Query: 1123 NYKVQP----IDDLK 1133
             ++V P    +DDLK
Sbjct: 1132 EWRVTPSDTLLDDLK 1146


>gi|350532150|ref|ZP_08911091.1| DNA polymerase III subunit alpha [Vibrio rotiferianus DAT722]
          Length = 1159

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1155 (42%), Positives = 732/1155 (63%), Gaps = 36/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L LL  NN GY  L  L+SKAY+      +  +   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  G+IG A+  G   + ++    +++ FPD FY+E+ R  + +    
Sbjct: 122  AELSEGLIVLSGAKSGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRSDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LHFAVELAEETQLPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP RISMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERISMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVRIESIPLDDAPSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  +F    +   +    Y +VP+W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV  + +  N    ++   +L       +P  +YY      +  +    
Sbjct: 1073 GSAREKYARGLSVSIDAQQVNDKFFEQFTRILEPHKAGTVPVNVYYQ-RADARARLTLGT 1131

Query: 1123 NYKVQP----IDDLK 1133
             ++V P    +DDLK
Sbjct: 1132 EWRVTPSDTLLDDLK 1146


>gi|386313143|ref|YP_006009308.1| DNA polymerase III subunit alpha [Shewanella putrefaciens 200]
 gi|319425768|gb|ADV53842.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens 200]
          Length = 1157

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1157 (42%), Positives = 731/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GDIG A+  G N   E+    +   F + +++E+ R  +P+    
Sbjct: 122  LTYNEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ NT+EIAKRCN+ +   +  LP FPT  +++I DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I K+  K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      +++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL+++PP++N   + F   ++ D    +I 
Sbjct: 779  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLTLIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDSLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFN-RTFNISILKKILLRFK-CKNGLPFVLYYCINKSIKYEMKFPL 1122
            I  AR  + K   V  +      ++L  I       ++G   VL        K + +   
Sbjct: 1071 IGEARSHFAKALEVDLDAEKLTPAVLDSIEQAMSPWRSGAVPVLINYSQTLAKGQFRLAD 1130

Query: 1123 NYKVQPIDDLKLALINL 1139
            +++V P D+L  AL +L
Sbjct: 1131 SWRVNPSDELVFALESL 1147


>gi|300902003|ref|ZP_07120030.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
 gi|301305320|ref|ZP_07211416.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
 gi|415864383|ref|ZP_11537477.1| DNA polymerase III subunit alpha [Escherichia coli MS 85-1]
 gi|300405889|gb|EFJ89427.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
 gi|300839425|gb|EFK67185.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
 gi|315254986|gb|EFU34954.1| DNA polymerase III subunit alpha [Escherichia coli MS 85-1]
          Length = 1144

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFVDIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|398801965|ref|ZP_10561196.1| DNA polymerase III, alpha subunit [Pantoea sp. GM01]
 gi|398090647|gb|EJL81114.1| DNA polymerase III, alpha subunit [Pantoea sp. GM01]
          Length = 1160

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1154 (42%), Positives = 735/1154 (63%), Gaps = 39/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   +++ AA    PA+A+TD  NL G+++FY SA+  GIK
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLVKKAAALGMPAIAMTDYINLCGLVRFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D  + +E+   + ++L +L  NN GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIVGADFHVASELMGDELTQLTVLAANNTGYQNLTLLISRAYQRGYGIDGPIIDRDWLLE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                  LI LSG   GD+G ++  G + +       + + FP+ +Y+E+ R  + +    
Sbjct: 124  LGEG--LILLSGGRRGDVGRSLLRGNSAMVAQCLSFYQEHFPNRYYLELIRTGRADEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FL + +F AHE+R  I +G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAIAEGVPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP+FPT   ++  DFL++KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPT-GEMSTEDFLVAKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++R+  L+ DP     +++ Y +RL  E+  I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERMEFLFPDPAERAEKRVEYDERLDIELTVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDIDPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   E
Sbjct: 421  MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLEKAFLAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY  E     +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDENGQFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSL-----NKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + +K IN +     L       +PL+DK 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALKMINPRREKQGLPPIDIAAIPLDDKK 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L+++ T AVFQLES+GMK+++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREEISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  FQ+GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFQDGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y F   +  +G   
Sbjct: 776  AHYPAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYPFH--VNDEG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEAI+  R + G+F  LFD   R D K INRR++  LI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIEAIIDARNEGGYFKELFDLCARTDTKKINRRVMEKLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L++++  ALK A++  K   I Q  +F        +   +Y  +  W ++ +
Sbjct: 890  RLGPHRAALMSALGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASITPWPEQVQ 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYSCTV---SGIITELKLKTTY 1002
            L  E++ LG  L+ H    Y  EI +++  + L ++ PT    V   +G++   ++  T 
Sbjct: 950  LDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVTVAAGLVIAARVMVTK 1009

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I  IDD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A +
Sbjct: 1010 RGNRIGICTIDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069

Query: 1062 IFDINVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEM 1118
            + DI+ AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      + ++
Sbjct: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARAKL 1128

Query: 1119 KFPLNYKVQPIDDL 1132
            +F   +++ P D L
Sbjct: 1129 RFGAAWRISPSDRL 1142


>gi|425141647|ref|ZP_18541979.1| DNA polymerase III subunit alpha [Escherichia coli 10.0869]
 gi|408605688|gb|EKK79182.1| DNA polymerase III subunit alpha [Escherichia coli 10.0869]
          Length = 1144

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 724/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTVPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|300816224|ref|ZP_07096447.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
 gi|309796361|ref|ZP_07690770.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
 gi|312970285|ref|ZP_07784467.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
 gi|415823998|ref|ZP_11512373.1| DNA polymerase III subunit alpha [Escherichia coli OK1180]
 gi|415877394|ref|ZP_11543571.1| DNA polymerase III, alpha subunit [Escherichia coli MS 79-10]
 gi|418039529|ref|ZP_12677791.1| DNA polymerase III subunit alpha [Escherichia coli W26]
 gi|419235996|ref|ZP_13778749.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9C]
 gi|425286699|ref|ZP_18677653.1| DNA polymerase III subunit alpha [Escherichia coli 3006]
 gi|300531431|gb|EFK52493.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
 gi|308120065|gb|EFO57327.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
 gi|310337783|gb|EFQ02894.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
 gi|323176499|gb|EFZ62091.1| DNA polymerase III subunit alpha [Escherichia coli OK1180]
 gi|342928029|gb|EGU96751.1| DNA polymerase III, alpha subunit [Escherichia coli MS 79-10]
 gi|378091404|gb|EHW53235.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC9C]
 gi|383477512|gb|EID69429.1| DNA polymerase III subunit alpha [Escherichia coli W26]
 gi|408219810|gb|EKI43928.1| DNA polymerase III subunit alpha [Escherichia coli 3006]
          Length = 1144

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|300824093|ref|ZP_07104213.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
 gi|415777456|ref|ZP_11488685.1| DNA polymerase III subunit alpha [Escherichia coli 3431]
 gi|415801912|ref|ZP_11499803.1| DNA polymerase III subunit alpha [Escherichia coli E128010]
 gi|415832547|ref|ZP_11517974.1| DNA polymerase III subunit alpha [Escherichia coli OK1357]
 gi|417632106|ref|ZP_12282332.1| DNA polymerase III subunit alpha [Escherichia coli STEC_MHI813]
 gi|418959634|ref|ZP_13511532.1| DNA polymerase III, alpha subunit [Escherichia coli J53]
 gi|419152026|ref|ZP_13696618.1| DNA polymerase III subunit alpha [Escherichia coli DEC6C]
 gi|419157442|ref|ZP_13701973.1| DNA polymerase III subunit alpha [Escherichia coli DEC6D]
 gi|419189932|ref|ZP_13733405.1| DNA polymerase III subunit alpha [Escherichia coli DEC7E]
 gi|419379047|ref|ZP_13920030.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC14C]
 gi|419394771|ref|ZP_13935559.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15B]
 gi|419804925|ref|ZP_14330074.1| DNA polymerase III, alpha subunit [Escherichia coli AI27]
 gi|420389516|ref|ZP_14888790.1| DNA polymerase III, &alpha subunit [Escherichia coli EPEC C342-62]
 gi|425113505|ref|ZP_18515360.1| DNA polymerase III subunit alpha [Escherichia coli 8.0566]
 gi|425270894|ref|ZP_18662419.1| DNA polymerase III subunit alpha [Escherichia coli TW15901]
 gi|425281517|ref|ZP_18672648.1| DNA polymerase III subunit alpha [Escherichia coli TW00353]
 gi|425420784|ref|ZP_18802028.1| DNA polymerase III subunit alpha [Escherichia coli 0.1288]
 gi|300523370|gb|EFK44439.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
 gi|315616331|gb|EFU96949.1| DNA polymerase III subunit alpha [Escherichia coli 3431]
 gi|323160196|gb|EFZ46155.1| DNA polymerase III subunit alpha [Escherichia coli E128010]
 gi|323181692|gb|EFZ67106.1| DNA polymerase III subunit alpha [Escherichia coli OK1357]
 gi|345368257|gb|EGX00264.1| DNA polymerase III subunit alpha [Escherichia coli STEC_MHI813]
 gi|378004150|gb|EHV67179.1| DNA polymerase III subunit alpha [Escherichia coli DEC6C]
 gi|378015608|gb|EHV78502.1| DNA polymerase III subunit alpha [Escherichia coli DEC6D]
 gi|378043380|gb|EHW05816.1| DNA polymerase III subunit alpha [Escherichia coli DEC7E]
 gi|378235072|gb|EHX95145.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC14C]
 gi|378252454|gb|EHY12344.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15B]
 gi|384377855|gb|EIE35748.1| DNA polymerase III, alpha subunit [Escherichia coli J53]
 gi|384472101|gb|EIE56163.1| DNA polymerase III, alpha subunit [Escherichia coli AI27]
 gi|391315749|gb|EIQ73273.1| DNA polymerase III, &alpha subunit [Escherichia coli EPEC C342-62]
 gi|408200425|gb|EKI25606.1| DNA polymerase III subunit alpha [Escherichia coli TW15901]
 gi|408206740|gb|EKI31512.1| DNA polymerase III subunit alpha [Escherichia coli TW00353]
 gi|408348584|gb|EKJ62680.1| DNA polymerase III subunit alpha [Escherichia coli 0.1288]
 gi|408573883|gb|EKK49689.1| DNA polymerase III subunit alpha [Escherichia coli 8.0566]
          Length = 1144

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|312966321|ref|ZP_07780547.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
 gi|415837490|ref|ZP_11519564.1| DNA polymerase III subunit alpha [Escherichia coli RN587/1]
 gi|418995187|ref|ZP_13542807.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC1A]
 gi|419016681|ref|ZP_13564009.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC1E]
 gi|425276058|ref|ZP_18667413.1| DNA polymerase III subunit alpha [Escherichia coli ARS4.2123]
 gi|312289564|gb|EFR17458.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
 gi|323190416|gb|EFZ75691.1| DNA polymerase III subunit alpha [Escherichia coli RN587/1]
 gi|377850554|gb|EHU15516.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC1A]
 gi|377867888|gb|EHU32642.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC1E]
 gi|408207601|gb|EKI32322.1| DNA polymerase III subunit alpha [Escherichia coli ARS4.2123]
          Length = 1144

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL+ L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLVFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|262170786|ref|ZP_06038464.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451]
 gi|261891862|gb|EEY37848.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451]
          Length = 1159

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1107 (44%), Positives = 716/1107 (64%), Gaps = 40/1107 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L KNN GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G+IG A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  MEHAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDLEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI----KKINTKTTNFSLNKLPLNDKDT 598
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +    KK+        +  +PL+D  +
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPVR--IEAIPLDDARS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            +  L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKH
Sbjct: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R  FQ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKT
Sbjct: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    
Sbjct: 777  HYPAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---A 830

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D 
Sbjct: 831  IVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDR 890

Query: 890  FNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L
Sbjct: 891  LGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG
Sbjct: 951  EGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ 
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070

Query: 1064 DINVARILYGKKFSVMFNRTFNISILK 1090
            D+  AR    +KF+    R  +ISIL+
Sbjct: 1071 DLGSAR----EKFA----RGLSISILQ 1089


>gi|422020047|ref|ZP_16366589.1| DNA polymerase III subunit alpha [Providencia alcalifaciens Dmel2]
 gi|414102671|gb|EKT64263.1| DNA polymerase III subunit alpha [Providencia alcalifaciens Dmel2]
          Length = 1160

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1151 (42%), Positives = 742/1151 (64%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +   +++  A    PA AITD +NL G++KFY +A+  GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +E    + + L +L +NN GY  L  L+S+AY +        I  +WL K
Sbjct: 64   PIIGADFYMESEQLGDEVAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG   GD+G  +  G   + +     +   FPD +Y+E+ R  +P+    
Sbjct: 124  HK--EGLILLSGGRKGDVGQFLLRGNQALVDESLEFYQTHFPDAYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ + F++ ++F AHE+R  I +G  L++ KR K ++ +Q  +
Sbjct: 182  LHAAVELATQRGLPVVATNDVCFIESSDFDAHEIRVAIHDGYTLADPKRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LPKFPT  ++   DFL+ ++K GL
Sbjct: 242  TEEEMCELFSDIPEALENSVEIAKRCNVTIRLGEYFLPKFPT-GDMETEDFLVMRAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLKFLFPDEKVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL  +LLFERFLNP R+SMPDFD+DFC E RD+VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLDPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDVNWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+IK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G F  +FD   R+D K INRR++  LI +GAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L++S++ ALK A++  K   I Q  +F        +   +Y  VP W ++  L  
Sbjct: 893  PHRAALMSSLEDALKAADQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y +EI ++   + L ++ PT      TV G++   K+ TT RG 
Sbjct: 953  ERETLGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD S  +++++ +   +K +++L+++ +LI +G+V  D F    ++   ++ D
Sbjct: 1013 RIGICTLDDRSGRLDIMLFSDALDKYQHMLEKDNILIATGQVSFDDFNGGNKMTVRELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
            I  AR  Y +  ++ + ++  N  +L ++   L       +P  LYY  + + + ++KF 
Sbjct: 1073 IGEAREKYARGLAISLSDKQINDQLLNRLRNALEPHRSGTIPVHLYYQKDDA-RAKLKFG 1131

Query: 1122 LNYKVQPIDDL 1132
            + ++V P+D L
Sbjct: 1132 VVWRVTPVDPL 1142


>gi|415780868|ref|ZP_11490655.1| DNA polymerase III subunit alpha [Escherichia coli EPECa14]
 gi|419207135|ref|ZP_13750266.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC8C]
 gi|323157979|gb|EFZ44081.1| DNA polymerase III subunit alpha [Escherichia coli EPECa14]
 gi|378064677|gb|EHW26837.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC8C]
          Length = 1144

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G   + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|407791719|ref|ZP_11138799.1| DNA polymerase III subunit alpha [Gallaecimonas xiamenensis 3-C-1]
 gi|407199196|gb|EKE69217.1| DNA polymerase III subunit alpha [Gallaecimonas xiamenensis 3-C-1]
          Length = 1168

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1169 (41%), Positives = 731/1169 (62%), Gaps = 48/1169 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR+HS++S++DG+ ++  +++ AA  + PALAITD  NL G+++FY SA+  GIK
Sbjct: 4    PSFIHLRVHSDFSMVDGVAKVGPIVKEAAAQHYPALAITDQGNLCGLVRFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D+W+T+     +  RL  L  +N GY  L  L+SK+Y+     GR  +  +WL  
Sbjct: 64   PIIGADLWVTSGPMGDQLYRLTALCLDNTGYQNLTMLISKSYLRGYVQGRPVVDRDWLAH 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              + +GL+ LSG   GD+GI +  G   + +     + + F D FY+E+ R  +P+    
Sbjct: 124  --HNEGLLLLSGGREGDLGIGLLKGNQQLVDEALGFYQQYFADRFYLELLRTNRPDEENY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ +  LK+ +F AHE R  I +G +L++  R K+++ +Q  K
Sbjct: 182  LHYAVELAQARGIPVVATNEVVILKEEDFDAHETRVAIRDGYVLADPNRPKRYSNQQYLK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  +M +LF DIPSA++N++EIAKRCN+ +  G+  LP FPT   ++I DFL+  S+ GL
Sbjct: 242  SAEQMAELFSDIPSALENSVEIAKRCNVTIRLGEYFLPNFPT-GELSIEDFLVKVSEKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLTFLFPDEKVRAEKRGEYDERLKIELDVINQMGFPGYFLIVMEFIQWSKDNNIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  +RDVGRV+   Y F D ISKLIP  PG  +TL  A +EE
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDRISKLIPGDPG--MTLKKAFEEE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E    +EEVR +I++A+++EG+ RN G HAGGV+IAP+ + +F P+Y  +     +
Sbjct: 479  PRLQEVYDADEEVRAVIDMARKLEGVTRNAGKHAGGVVIAPTTITDFAPIYCDDQGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS-----LNKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + ++ IN +          +  +PL+D+ 
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIID---WALEMINPRLERMGKAPVDIAAIPLDDRY 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            +++ L  A T AVFQLES+GMK ++K  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFSKLLNAETTAVFQLESRGMKELIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKK
Sbjct: 656  HGREELSYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRATFEDGAKANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             H+ + FMAA +S  MD+T+KI  LV D ++  GL + PP++N+  Y F   +   G   
Sbjct: 776  AHFPAEFMAAVMSADMDNTDKIVTLV-DEVRRLGLVMQPPDVNVGLYKF--TVNDKG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            ++ YG+GAIKG G+  IEAI+  R + G F++LFDF  R+D K +NRR++  L+ +GA D
Sbjct: 830  EVIYGIGAIKGVGEGPIEAILEARDQGGPFSDLFDFCNRVDIKKVNRRVLEKLVQAGAMD 889

Query: 889  C-----------FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNY 935
                          E+R  L A++  A+K AE+  K   I Q  LF   + +      ++
Sbjct: 890  SLGPIKGSLKGRLGEQRARLFATLPEAIKAAEQHTKAQSIGQGDLFGLVNESPEDNQQSF 949

Query: 936  VKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGI 992
             +  +W  +  L  E+  LG  LS H    Y  E++  +   LS+++PT    S  ++G+
Sbjct: 950  AQADTWPDEVWLQGERDTLGLYLSGHPIDRYLGELKHLVRSRLSDVQPTPKGGSVVLAGL 1009

Query: 993  ITELKLKTTYRG--KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR 1050
            +  ++     R   +  I+ +DD S  ++V++    YE+ ++ L  + +L+V G+V  D 
Sbjct: 1010 VLAVRPMINKRNGKRWGILTLDDGSARLDVMLYADTYEQYQDFLAPDLVLVVEGQVSFDD 1069

Query: 1051 FLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCI 1110
            F    R+ A  +  I  AR  + +  ++      +   L  +L  F  +   P  L+   
Sbjct: 1070 FSGGYRMTARNVMTITQARERHARGLTLQVADHISPEQLLGVLEPF-SQGTCPVTLHLA- 1127

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
            N+    E+   + ++V P D L   L  L
Sbjct: 1128 NQEAAGELNLGVRWRVMPEDALLFKLGTL 1156


>gi|419348273|ref|ZP_13889628.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13B]
 gi|378205664|gb|EHX66074.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC13B]
          Length = 1144

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEVDEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|410614343|ref|ZP_11325391.1| DNA polymerase III subunit alpha [Glaciecola psychrophila 170]
 gi|410166178|dbj|GAC39280.1| DNA polymerase III subunit alpha [Glaciecola psychrophila 170]
          Length = 1161

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1146 (43%), Positives = 719/1146 (62%), Gaps = 32/1146 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HS+YS++DGL ++  +I        PA+AITD  N+ G++KFY  A+  GIKPI
Sbjct: 12   FVHLRVHSDYSMLDGLNKVKPLIAHVKELGMPAVAITDQMNMCGLVKFYSQAHANGIKPI 71

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG D W+ ++       RL LL  +N GY  +  L+SKAY+      RA I  +WL   +
Sbjct: 72   IGVDFWVQSDELVGTLFRLTLLAMDNKGYKNITLLVSKAYLRGSVKDRAVIDKDWL--VE 129

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
            +  G+I +SG   GD+G+ +  G  DIA N  + +   FP+ FY+E+ R  +      I 
Sbjct: 130  HSQGVIIISGGKAGDLGMLLTKGNMDIAHNVTQFYQHHFPNRFYLELTRTGRDGEEDYIH 189

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              +N A   +LP+VAT+ + F+ +  F AHE+R  I +G  L++ +R K+++++Q  +T 
Sbjct: 190  SAVNWAQQYDLPVVATNEVCFVDRQYFDAHEIRVAIHDGFTLNDPRRPKEYSEQQYLRTS 249

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF DIP A+QNT+EIAKRCN+ ++ G   LP FPT   ++I DFL+  SK GL++
Sbjct: 250  EEMSELFADIPEAVQNTVEIAKRCNVTVQLGTYFLPDFPT-DGMDIKDFLVKVSKEGLER 308

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  L+ D ++   ++  Y +RL  E+  I +M F GYFLIV +FIQW+K+N+IPVGPGR
Sbjct: 309  RLAFLFPDEQVRLEKRPEYDERLDIELVVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGR 368

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD VI +V + Y
Sbjct: 369  GSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEMY 428

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+DAVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL  A  EEP+
Sbjct: 429  GRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPG--MTLEKAFLEEPR 486

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
            L E    +E+V++LI++ + +EG  RN G HAGGV+IAP+ + +F PLY  +     ++Q
Sbjct: 487  LPELYSQDEDVKELIDMCRILEGCTRNAGKHAGGVVIAPTLITDFAPLYCDDEGKNPVTQ 546

Query: 545  YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKK 604
            +DK+D+E  GL+KFDFLGL TL+I+      IK+   K  +  +  +PL D   + +L+ 
Sbjct: 547  FDKNDVETAGLVKFDFLGLRTLTIIQWATDMIKE--GKGIDVDIAAIPLVDAKCFRVLQN 604

Query: 605  ANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFN 661
            A T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   +++NF  RKHG E  +
Sbjct: 605  AETTAVFQLESRGMKELIKRLKPDSFEDIIALVALFRPGPLQSGMVENFIDRKHGREEVS 664

Query: 662  YPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIE 716
            YPD        K++L  TYGI++YQEQVMQIAQ++ GYSLG ADLLRRA+GKK   EM +
Sbjct: 665  YPDAEYQHECLKEILQPTYGIILYQEQVMQIAQVMSGYSLGGADLLRRAMGKKNLEEMEK 724

Query: 717  HRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFF 776
             R+ F+ GA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + F
Sbjct: 725  QRESFETGAKENGIDPTLAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEF 784

Query: 777  MAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLG 836
            MAA +S  MD+++KI  LV D     GL+ILPP++N     F   ++ +G   ++ YG+G
Sbjct: 785  MAAVMSADMDNSDKIVTLV-DECNRMGLTILPPDVNAGSRKF--TVDEEG---RVVYGIG 838

Query: 837  AIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            AIKG G+  IEAI+  R + G F++LFDF  ++D K IN+RI+  L+ +GA D     R 
Sbjct: 839  AIKGVGEGPIEAIIEAREETGKFSDLFDFCAKVDLKRINKRILEKLVLAGALDNLGPHRA 898

Query: 896  MLVASIDVALKNA--EKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
             L++S+  AL  A      K   Q  +F        +    + +VP W +K  L  EK  
Sbjct: 899  SLMSSLPDALAAAGQHAKNKTSGQSDMFGLLTTETEQVQQAFAEVPHWPEKVWLDGEKTT 958

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRG-KILII 1009
            LG  L+ H    Y +EI+ + P  L +LKPT    ++   G++  +++ T  RG +  ++
Sbjct: 959  LGLYLTGHPINQYLSEIKHYAPCRLVDLKPTNRDQIAYAVGLVLGVRVMTNKRGRRWALV 1018

Query: 1010 VIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
             +DD S  ++V     + E+ + +L+ +++L++SG+V  D F     I+A  + D+  AR
Sbjct: 1019 TLDDKSARIDVRFFPDMLEQFEELLQADKILVISGQVSFDEFSGGNTISARDVMDLVQAR 1078

Query: 1070 ILYGKKFSVMFNRTF-NISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKV 1126
                K   V    ++ N S L K+    +   G   P  ++Y ++  +K ++     + V
Sbjct: 1079 EKNAKGLQVHLESSWCNPSTLAKMQTILQPYQGGSCPVQIHY-VHPDVKVDLTLGAQWYV 1137

Query: 1127 QPIDDL 1132
             P D+L
Sbjct: 1138 SPQDEL 1143


>gi|188025561|ref|ZP_02959074.2| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827]
 gi|188023078|gb|EDU61118.1| DNA polymerase III subunit alpha [Providencia stuartii ATCC 25827]
          Length = 1144

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1138 (42%), Positives = 731/1138 (64%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++  A    PA AITD +NL G++KFY +A+  GIKPIIG D ++ +E 
Sbjct: 1    MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFFVESEQ 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L +NN GY  L  L+S+AY +        I  +WL K+K  +GLI LSG 
Sbjct: 61   LGDEIAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVKHK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              GD+G  +  G   + +     +   FP  +Y+E+ R  +P+    +   + +A+   L
Sbjct: 119  RQGDVGQFLLRGNQALVDECLAFYETHFPGCYYLELIRTGRPDEESYLHAAVELATQRGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F++ ++F AHE+R  I +G  LS+ KR KK++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIESSDFDAHEIRVAIHDGFTLSDPKRPKKYSPQQYLRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++N++EIAKRCN+ +  G+  LP+FPT  ++   DFL+ +SK GL++RL  L+ D ++
Sbjct: 239  EALENSVEIAKRCNVTIRLGEYFLPQFPT-GDMKTEDFLVMRSKEGLEERLKFLFPDEKV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RAERRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI +V   YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        ++Q+DK+D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I  ++         +  +PL+D+ ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLDDQKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
            IK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  IKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL +LPP+IN   Y+F   +  +G   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWR-MGLKVLPPDINSGLYHFH--VNDEG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G F  +FD   R+D K INRR++  LI +GAFD     R  L++S++ A
Sbjct: 830  IEAIIEARQKGGIFKEIFDLCARVDLKKINRRVMEKLIMAGAFDHLGPHRAALMSSLEDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y  VP W  +  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQTDMFGVLAEAPEQVESSYASVPKWPDQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI ++   + L ++ PT      TV G++   K+ TT RG +I I  +DD S  
Sbjct: 950  ITRYLNEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +++++ +   +K +++L+++ +LI +G+V  D F    ++   ++ DI+ AR  Y +  +
Sbjct: 1010 LDIMLFSDALDKYQHLLEKDSILIATGQVSFDDFNGGNKMTVRELMDISEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + ++  N  +L ++   L       +P  LYY  + + + ++KF + ++V P+DDL
Sbjct: 1070 ISLSDKQINDQLLNRLRSTLEPHRSGTIPVHLYYQKDDA-RAKLKFGVVWRVTPVDDL 1126


>gi|315111545|ref|YP_156071.2| DNA polymerase III subunit alpha [Idiomarina loihiensis L2TR]
          Length = 1158

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1160 (41%), Positives = 734/1160 (63%), Gaps = 38/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HLR+HS++S+IDGL ++  + EA A    PALAITD  N  G++++Y  A+  G+K
Sbjct: 4    PNFVHLRVHSDFSMIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IGCD W+  +    +  RL  L  +N GY Q+ +L+SKAY+     G+  I  +WL++
Sbjct: 64   PLIGCDFWVQADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKGKPVIDKDWLKE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRN---DIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
              + +G+I LSG+  GD+G A+  G +   D A +F   + + FPD +Y+E+ R  +P  
Sbjct: 124  --HNEGIILLSGSRQGDVGQALIKGHDSQLDAALDF---YQQYFPDRYYLELVRTGRPQE 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               + + + +A    LP+VAT+ + FLK+ +F AHE+R  I +G  L + +R KK++ +Q
Sbjct: 179  ENYLHKAVALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRPKKYSPQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              ++  EM +LF DIP AI+NT+EIAKRCN+ +  G+  LPKFPT  ++   +FLI  S+
Sbjct: 239  YLRSSEEMSELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPKFPT-GDLTTEEFLIKVSE 297

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D E  + ++  Y +RL+ E+  I  M F GYFLIV +FIQW+K+N IP
Sbjct: 298  EGLEERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVMEFIQWSKDNGIP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDH 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG++AVSQI+TFGTMAAK AIRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct: 418  VADLYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGDPG--MTLAKAF 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EPQL      +EEV+ +I++A+ +EG+ RN G HAGGV+I+P+K+ +F PLY  +   
Sbjct: 476  EIEPQLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDFSPLYCDDEGN 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++Q+DKDD+E  GL+KFDFLGL TL+I+   +  + + + K+      +  + L D  
Sbjct: 536  NPVTQFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPIDITSIDLTDPA 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
             + LLKKA T AVFQLES+GMK ++K+  PD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 596  CFKLLKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        + +L  TYG+++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 656  HGREEISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R+ F  GA +  +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++K
Sbjct: 716  KPEEMAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA +S  MD+T+KI + + D  +  GL +LPP++N  +Y F     +  + +
Sbjct: 776  THFPAEFMAAVMSADMDNTDKI-VTLADECERMGLDLLPPDVNKGEYKF-----TVDEQQ 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            ++ YG+GAIKG G++ IE+I+  R+ G  F +LFDF  R+D K +N+RI+  LI +GA D
Sbjct: 830  RVVYGIGAIKGVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRAGAMD 889

Query: 889  CFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+A+++ A++ AE+    + I Q  +F             +V V  WS+   
Sbjct: 890  NLGPHRASLMATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVRKWSEAVW 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYR 1003
            L  E+  LG  L+ H    +  E++ +I   LS + PT    S  ++G++ ++++ T  R
Sbjct: 950  LEGERDTLGLYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDVRVLTNKR 1009

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +  I+ +DD +  ++V + +  YE  + +L+++ +L + G+V  D F  +  + A ++
Sbjct: 1010 GQRFAIVTLDDKTARMDVRLFSNEYESYQELLEKDRILWIKGEVRFDNFSNSNTMTAREV 1069

Query: 1063 FDINVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMK 1119
              I  AR  Y +  ++ + +      +  K+  LL+   +   P  + Y  ++ ++  + 
Sbjct: 1070 MAIEQARETYLRHLAITVTDEQLAKGLAGKLEKLLQPFAEGTCPIKMRYQ-SERVEATLN 1128

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
                + V P D+L   L NL
Sbjct: 1129 VGAQWYVNPSDELIYELQNL 1148


>gi|309787142|ref|ZP_07681754.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
 gi|308924720|gb|EFP70215.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
          Length = 1144

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ +M +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEDMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVSLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|417363518|ref|ZP_12136704.1| DNA polymerase 3 alpha subunit [Salmonella enterica subsp. enterica
            serovar Hvittingfoss str. A4-620]
 gi|353600076|gb|EHC56091.1| DNA polymerase 3 alpha subunit [Salmonella enterica subsp. enterica
            serovar Hvittingfoss str. A4-620]
          Length = 1155

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1149 (42%), Positives = 722/1149 (62%), Gaps = 44/1149 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA+   PALAITD +NL G++KFY + +  GIKPI+G D  + NE+
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL + K  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK--EGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G  +  G   + E     +   FPD +++E+ R  + +    +   + +A    L
Sbjct: 119  RMGDVGRCLLRGNQTLVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGL 178

Query: 196  PIVAT-----------HPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
            P+VAT           + ++FL+  +F AHE+R  I +G  L + KR + ++ +Q  +++
Sbjct: 179  PVVATPIVNGKVPVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 238

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM +LF DIP A++NT+EIAKRCN+ +  G+  LP+FPT  ++   D+L+ K+K GL++
Sbjct: 239  EEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGLEE 297

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  L+ D E  K  +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGR
Sbjct: 298  RLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 357

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D Y
Sbjct: 358  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 417

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EPQ
Sbjct: 418  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAEPQ 475

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
            L E  + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q
Sbjct: 476  LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 535

Query: 545  YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLL 602
            +DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L
Sbjct: 536  FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDML 595

Query: 603  KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EY 659
            +++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E 
Sbjct: 596  QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 655

Query: 660  FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
             +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM
Sbjct: 656  LSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 715

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
             + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY +
Sbjct: 716  AKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 775

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  +G   +I YG
Sbjct: 776  EFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIVYG 829

Query: 835  LGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            +GAIKG G+  IEAI+  R + G+F  LFD   R D K +NRR++  LI SGAFD     
Sbjct: 830  IGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 889

Query: 894  RYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            R  L+ S+  ALK A++  K   I Q  +F        +   +Y     W ++  L  E+
Sbjct: 890  RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 949

Query: 952  KVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KI 1006
            + LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  T RG +I
Sbjct: 950  ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRI 1009

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+
Sbjct: 1010 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1069

Query: 1067 VARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLN 1123
             AR  Y +  ++ + +R  +  +L ++   L       +P  LYY      +  ++F   
Sbjct: 1070 EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGAT 1128

Query: 1124 YKVQPIDDL 1132
            ++V P D L
Sbjct: 1129 WRVSPSDRL 1137


>gi|417687993|ref|ZP_12337244.1| DNA polymerase III subunit alpha [Shigella boydii 5216-82]
 gi|332095123|gb|EGJ00155.1| DNA polymerase III subunit alpha [Shigella boydii 5216-82]
          Length = 1144

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGNA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|424793714|ref|ZP_18219790.1| DNA polymerase III alpha subunit [Xanthomonas translucens pv.
            graminis ART-Xtg29]
 gi|422796428|gb|EKU24935.1| DNA polymerase III alpha subunit [Xanthomonas translucens pv.
            graminis ART-Xtg29]
          Length = 1197

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1137 (42%), Positives = 693/1137 (60%), Gaps = 80/1137 (7%)

Query: 4    QFIHLRLHSEYSIIDGLLRIND--------------VIEAAANDYQPALAITDLSNLFGI 49
            +F HL +H+E+S+ D  +R+ +              ++  A     PALA+TDL+NLF +
Sbjct: 5    RFAHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELELPALAVTDLNNLFAL 64

Query: 50   IKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE-NI 108
            +KFYK+A   GIKPI G D+ I +    + P RL +L +N +GYL L  LL++A++E + 
Sbjct: 65   VKFYKAAEGVGIKPIAGADLLIADSA-GETPWRLTVLCRNRDGYLSLSRLLTRAWLEGHR 123

Query: 109  NYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
            N G   IR EWL+     D L AL+G      G     GR+D+AE     W +IF D  +
Sbjct: 124  NEGGVAIRPEWLQTGS--DNLFALAG-RSSLAGRLASEGRHDLAEQQLADWQRIFGDGLH 180

Query: 169  IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
            +E+ R  +       Q  ++ A    LP+VA++ ++FL  ++F AHE R CI+ G +L +
Sbjct: 181  LELTRTGRDGEEAFNQFALHAAGTRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDD 240

Query: 229  TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNI 288
             KR + ++ +Q  K+  EM  LF DIP A+ NT+ +A+RCN++++ G   LP +P P N 
Sbjct: 241  PKRPRDYSDQQYLKSSEEMAALFADIPDALDNTLALAQRCNIEMQLGTYFLPAYPVPDNE 300

Query: 289  NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSD 348
             ++ ++ S+S+ GL  RL    K+P      +  Y +RL+FE++TIIKM F GYFLIV+D
Sbjct: 301  TLDSWIRSQSRDGLAARL---EKNPLAPGKTRQDYVERLEFELDTIIKMGFPGYFLIVAD 357

Query: 349  FIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDF 408
            FIQW K+  IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDF
Sbjct: 358  FIQWGKHQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDF 417

Query: 409  CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468
            C + RD VI YV  +YG+D VSQI+T+GTMAAK  +RD GRVL   Y   D ++KLIP  
Sbjct: 418  CMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGLVDGVAKLIPNI 477

Query: 469  PGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
             G  ITL +A+ E        P+L +R ++E++VR L++LA+Q+E + RN G HAGGV+I
Sbjct: 478  LG--ITLKDAMGEGKDSEMASPELIQRYQSEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 535

Query: 522  APSKLINFCPLYKQEGMTGI----ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK 577
            AP+ L +FCPL+ +  +  +    ++Q+DKDD+E++GL+KFDFLGL TL+I+D   + +K
Sbjct: 536  APTPLSDFCPLFAEHDVDNLGKNPVTQFDKDDVEQVGLVKFDFLGLRTLTIID---WAVK 592

Query: 578  KINTKTTN-----FSLNKLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
             IN +          +  LPL+D  TY  +    NT AVFQ ES GM+ +LK+AKPD FE
Sbjct: 593  AINVRHARAGIPPLDITALPLDDAPTYKGIFASGNTGAVFQFESSGMRRLLKDAKPDRFE 652

Query: 632  EIIALISLYRPGPMDLIKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
            ++IAL+SLYRPGPMDLI +F  RKHG+    YPDPRT+ +L +TYGIMVYQEQVMQ+AQI
Sbjct: 653  DLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQI 712

Query: 691  LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
            +G YSLG ADLLRRA+GKK  +EM +HR+ F+ GA K G+ + KA+EIF+ +EKFAGYGF
Sbjct: 713  VGAYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGQAKADEIFDLMEKFAGYGF 772

Query: 751  NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
            NKSHA AYAL+SY TA+LK HY + FMAA LS  MD+T+K+ +   D ++  GL++LPP 
Sbjct: 773  NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKV-VGFLDEVRNLGLTVLPPR 831

Query: 811  INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRID 869
            +N S Y F  +         I+YGLGAIKG G+   EAIV ER + G + +L DF  R++
Sbjct: 832  LNASAYMFAAVTPD-----TIQYGLGAIKGVGRGACEAIVAERERGGDYVSLLDFCTRVE 886

Query: 870  KKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNN 927
               +N+R + +LIN+GA D     R  L+  +   +K  E+   ++   Q SLF   D +
Sbjct: 887  SAKLNKRTLEALINAGAMDGLGSNRATLMLQLPEVMKATEQMARERASGQNSLFGGADTS 946

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------ 981
                 L   +   W   Q L  E++ LGF LS H F  Y  EIR+ +   LS L      
Sbjct: 947  APALRLELPESKEWPLGQLLTGERETLGFYLSGHPFDPYREEIRELVGCDLSALEKICTQ 1006

Query: 982  -----------------KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN 1024
                             +P  S  ++G +  ++ K   +   + + ++D    VE     
Sbjct: 1007 SGGGRGGGGGGGEKRAWRPETSAILAGQVVGVRRKGDSQ---VFVQLEDGRGRVECSAFT 1063

Query: 1025 QLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN 1081
                +  ++L  + +LIV G V ED F     +   + +D       + ++ S+  +
Sbjct: 1064 DAIAEFGHLLTRDRILIVKGGVREDEFNGGYAMRIRQCWDYEQICTHHAQRLSLRLD 1120


>gi|417680427|ref|ZP_12329814.1| DNA polymerase III subunit alpha [Shigella boydii 3594-74]
 gi|332098772|gb|EGJ03732.1| DNA polymerase III subunit alpha [Shigella boydii 3594-74]
          Length = 1144

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y    +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|425298358|ref|ZP_18688416.1| DNA polymerase III subunit alpha [Escherichia coli 07798]
 gi|408222105|gb|EKI46012.1| DNA polymerase III subunit alpha [Escherichia coli 07798]
          Length = 1144

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|262404579|ref|ZP_06081134.1| DNA polymerase III alpha subunit [Vibrio sp. RC586]
 gi|262349611|gb|EEY98749.1| DNA polymerase III alpha subunit [Vibrio sp. RC586]
          Length = 1159

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1105 (43%), Positives = 714/1105 (64%), Gaps = 36/1105 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L KNN GY  L  L+SKAY+      +  +   WL  
Sbjct: 64   PIIGADFTLQSEEFGDELTKLTVLAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSG   G+IG A+  G     E     +   F D+FY+E+ R  + +    
Sbjct: 122  MEHAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +++EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMAIEDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +PE+    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
             L+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  FQ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
              AR    +KF+    R  +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089


>gi|29654634|ref|NP_820326.1| DNA polymerase III subunit alpha [Coxiella burnetii RSA 493]
 gi|29541902|gb|AAO90840.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493]
          Length = 1143

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1083 (44%), Positives = 695/1083 (64%), Gaps = 36/1083 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HL++HSEYSI+D ++RI+ +++ A +   PA+A+TD  NLF ++KFY+ A NKG
Sbjct: 1    MTISFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            IKPIIG ++ +    E     R   L +N  G+  L +LLS+AY+E        I+ EWL
Sbjct: 61   IKPIIGSELLLA---EGDDVFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHVLIQWEWL 117

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +GLI LSGA  G++G A+   R+ +AE    RW   FP  FY+E+QR ++    
Sbjct: 118  VQAN--EGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRTRRDQEE 175

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I   I +A    +P+VAT+ + FL + +F AHE R CI +G +L +  R ++++ +Q 
Sbjct: 176  EYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPREYSDQQY 235

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            FK+  EM  LF DIP A++NT+EIAKRC++ L   +  LPKFP P N+ + D+  +++K 
Sbjct: 236  FKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLDEVFLPKFPVPANLKVEDYFRAQAKQ 295

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL +RL+ L     +   +   Y++RL+ EI  I KM F+ YFLIV+DFI WAK + IPV
Sbjct: 296  GLTRRLVGLEMKNNLTHKD---YEERLETEITVITKMGFASYFLIVADFIAWAKQHHIPV 352

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL IT++DPL ++LLFERFLN  R+SMPDFDIDFC EGRDRVI YV
Sbjct: 353  GPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGRDRVIDYV 412

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             +RYG++AV+QI+T+GTMAA+  +RDVGRVL L Y + D I+KL+PF+ G  +TL  A++
Sbjct: 413  AERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG--VTLEKALE 470

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +E  LA+R   +EEV+ LI+LA ++EG+ RN G HAGGV+IAP+KL +F PLY + G   
Sbjct: 471  QEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYSEPGSDH 530

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK-----TTNFSLNKLPLND 595
            +++Q+DKDD+E +GL+KFDFLGL TL+I++   + ++ IN K      T   +  +PL+D
Sbjct: 531  VVTQFDKDDVEAVGLVKFDFLGLRTLTIIN---WAVQNINAKRKIQNETELDIGTIPLDD 587

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
              TY LLK   T AVFQLES+GMK +++  +PD F +I+AL++L+RPGP+   +++ F  
Sbjct: 588  PKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVETFIA 647

Query: 654  RKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
             KHGE   ++  P  + +L  TYG+++YQEQVMQIAQ+L GYSLG AD+LR A+GKKK  
Sbjct: 648  CKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKKKPE 707

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F  G    GL +  AN+IF+ +EKF+GYGFNKSH+ AYAL++Y TA+LK HY
Sbjct: 708  EMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLKAHY 767

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA LS  MD+T+K+   + +  +   L +LPPNIN S Y F   + + G   +I 
Sbjct: 768  PAEFMAAVLSSDMDNTDKVVGFINEC-RDMNLELLPPNINWSHYPF--TVNTKG---QIV 821

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGAIKG G++    IV  R+  G F  LF+F  R+D + +NRR +  LI SGA D F 
Sbjct: 822  YGLGAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFG 881

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  S+  A + AE+  +   + Q  LF  ++   + E  +Y +VP W+    L  
Sbjct: 882  VSRASLFESLTKAFQAAEQRNRDMILGQHDLF-GEEVKGIDE--DYTEVPEWNDSDRLRG 938

Query: 950  EKKVLGFCLSEHIF--CIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGK-I 1006
            EK+ LG  +S H    CI E +    +PI    L    S  V+G++  ++  TT  GK +
Sbjct: 939  EKETLGLYVSGHPLQACIKEMKAVGAVPINHLSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             I+ ++D +  ++V + N LY++    L ++ +L++ G V  D +    ++ A+ +  ++
Sbjct: 999  AILSLEDQTGKIDVTLFNDLYQQVAADLTDHAILVIRGTVGRDDYTGGQKMVADMLLTLD 1058

Query: 1067 VAR 1069
              R
Sbjct: 1059 KVR 1061


>gi|420334445|ref|ZP_14836068.1| DNA polymerase III subunit alpha [Shigella flexneri K-315]
 gi|391268622|gb|EIQ27547.1| DNA polymerase III subunit alpha [Shigella flexneri K-315]
          Length = 1144

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 721/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTALLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPRFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPD-----P 665
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD      
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDIQWQHE 655

Query: 666  RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y    +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|410632344|ref|ZP_11343005.1| DNA polymerase III subunit alpha [Glaciecola arctica BSs20135]
 gi|410148114|dbj|GAC19872.1| DNA polymerase III subunit alpha [Glaciecola arctica BSs20135]
          Length = 1161

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1150 (42%), Positives = 725/1150 (63%), Gaps = 40/1150 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HS+YS++DGL ++  +I        PA+AITD  N+ G++KFY+ A+  GIKPI
Sbjct: 12   FVHLRVHSDYSMLDGLNKVKPLIAHVKKLGMPAVAITDQMNMCGLVKFYRQAHANGIKPI 71

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG D W+ ++       RL LL  +N GY  +  L+SKAY+      RA I  +WL   +
Sbjct: 72   IGVDFWVQSDELEGALFRLTLLAMDNKGYKNITLLVSKAYLRGSIKDRAVIDRDWL--VE 129

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
            + +G+I LSG   GD+G+ +  G  DIA+N  + + + F + FY+E+ R  +      I 
Sbjct: 130  HTEGVIILSGGKSGDLGMMLTKGNMDIAQNITQFYQQHFENRFYLELTRTGRAGEEDYIH 189

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
            + ++ A   +LP+VAT+ + F+ +  F AHE+R  I +G  L++ +R K+++++Q  +T 
Sbjct: 190  RAVDWAQQFDLPVVATNEVCFVDRQYFDAHEIRVAIHDGFTLNDPRRPKEYSEQQYLRTA 249

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM+++F DIP AIQNT+EIAKRCN  ++ G   LP FPT   ++I DFL+  S+ GL++
Sbjct: 250  EEMVEIFSDIPEAIQNTVEIAKRCNATVQLGTYFLPDFPT-DGMDIKDFLVKVSEEGLER 308

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  L+ D ++   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N+IPVGPGR
Sbjct: 309  RLAFLFPDEQVRIAKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGR 368

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD VI +V + Y
Sbjct: 369  GSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEMY 428

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+DAVSQI+TFGTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL  A  EEP+
Sbjct: 429  GRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPG--MTLEKAFVEEPR 486

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQ 544
            L E    +E+V++LI++ + +EG  RN G HAGGV+IAP+ + +F PLY  +     ++Q
Sbjct: 487  LPELYNQDEDVKELIDMCRILEGCTRNAGKHAGGVVIAPTVITDFAPLYCDDEGKNPVTQ 546

Query: 545  YDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKK 604
            +DK+D+E  GL+KFDFLGL TL+I+   I  IK  + K  +  +  +PL D   + +L+ 
Sbjct: 547  FDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIK--SGKGIDVDIASIPLIDPKCFRVLQN 604

Query: 605  ANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFN 661
            A T AVFQLES+GMK ++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +
Sbjct: 605  AETTAVFQLESRGMKELIKRLKPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAVS 664

Query: 662  YPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIE 716
            YPD        K++L  TYGI++YQEQVMQIAQ++ GYSLG ADLLRRA+GKK   EM +
Sbjct: 665  YPDAEYQHECLKEILEPTYGIILYQEQVMQIAQVMSGYSLGGADLLRRAMGKKNLEEMEK 724

Query: 717  HRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFF 776
             R+ F+ GA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + F
Sbjct: 725  QRESFETGAKENGIDPTLAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEF 784

Query: 777  MAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLG 836
            MAA +S  MD+++KI  LV D     G++ILPP++N   + F   ++ +G   +I YG+G
Sbjct: 785  MAAVMSADMDNSDKIVTLV-DECNRMGITILPPDVNAGSHKF--TVDEEG---RIVYGIG 838

Query: 837  AIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            AIKG G+  IEAI+  R + G F +LFDF  +ID K IN+RI+  L+ +GA D     R 
Sbjct: 839  AIKGVGEGPIEAIIEARGETGKFRDLFDFCAKIDLKRINKRILEKLVLAGALDNLGPHRA 898

Query: 896  MLVASIDVALKNA-----EKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             L+ S+  AL  A     +KT    +   L   +     + + +   VP W +K  L  E
Sbjct: 899  SLMTSLPDALAAAGQHAKDKTSGQSDMFGLLTTEPEQVQQAFAD---VPPWPEKVWLDGE 955

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-KI 1006
            K  LG  L+ H    Y +EI+ + P  L +LKPT    +    G++  +++ T  RG + 
Sbjct: 956  KTTLGLYLTGHPINQYLSEIKHYAPCRLVDLKPTNRDQTAFAVGLVLGVRVMTNKRGRRW 1015

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             ++ +DD S  ++V     + E+ + +L+E+++L++SG+V  D F     ++A    D+ 
Sbjct: 1016 ALVTLDDKSARLDVRFFPDMLEQYEELLQEDKILVISGQVSFDEFSGGNTMSARDAMDLV 1075

Query: 1067 VARILYGKKFSVMFNRTF----NISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
             AR    K   V    ++     I+ L+ IL  ++     P  ++Y ++   K ++    
Sbjct: 1076 QAREKNAKGLQVHLESSWCNPSTIAKLQTILQPYQ-GGSCPVQVHY-VHPDAKVDLTLGA 1133

Query: 1123 NYKVQPIDDL 1132
             + V P D+L
Sbjct: 1134 QWYVTPQDEL 1143


>gi|365966520|ref|YP_004948082.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans ANH9381]
 gi|365745433|gb|AEW76338.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans ANH9381]
          Length = 1158

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1163 (42%), Positives = 732/1163 (62%), Gaps = 45/1163 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + + +   +  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGTDVLVQSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADLPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRA--GVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  ERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  ++   D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLTTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  DGLEERLKVLFPDEKVRAECRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF--SLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       ++ +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLVDISAIPLDDQQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMRM-GLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q+ +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS +    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSYPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRVAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N LP  +YY   +  + 
Sbjct: 1069 MTIDEARARYAKSLAICLSQE---QITPQFIKQFKSILQPYSGNSLPVHIYYQSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPIDDLKLALINL 1139
             +K  + + V P D+L   L  L
Sbjct: 1125 LVKMGVQWSVNPTDELLTELAAL 1147


>gi|260775271|ref|ZP_05884168.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260608452|gb|EEX34617.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1159

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1151 (42%), Positives = 732/1151 (63%), Gaps = 34/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL++HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLKVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E   ++ ++L +L  +N GY  L  L+SKAY+      +  I  +WL  
Sbjct: 64   PIIGADFAMQSEEFGEELTKLTVLAADNEGYKNLTLLISKAYLRGHVQHQPVIDKQWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +   GLI LSGA  G+IG A+  G + +A+N A  + + F D F++E+ R  + +    
Sbjct: 122  AELSAGLIVLSGAKSGEIGKALLKGNHKVAQNCADFYHQHFADRFFLELTRTGRADEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +  A    LP+VAT+ +  L +T F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALEFAEKEQLPVVATNDVVILDETTFEAHEIRVAIHDGYTLEDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E+E I  M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEEERAKRRPEYDERLKVELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTKTTN-FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  +  +   +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLKVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q  LF        +    Y KVP+W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQYHQAEAFGQSDLFGVLTEAPEEVEHKYTKVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEQDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT----FNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
              AR  Y +  SV   ++           KIL  +K    +P  +YY  + + +  +   
Sbjct: 1073 GTAREKYARGLSVSIEQSQIDDQFFERFSKILEPYKAGT-VPVHIYYQRSDA-RARLTLG 1130

Query: 1122 LNYKVQPIDDL 1132
              ++V P D+L
Sbjct: 1131 TEWRVTPSDEL 1141


>gi|418464836|ref|ZP_13035775.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans RhAA1]
 gi|359756791|gb|EHK90948.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans RhAA1]
          Length = 1158

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1154 (42%), Positives = 727/1154 (62%), Gaps = 45/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A       A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGSGMVAMCLTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + +E+  ++  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGTDVLVQSELCGEEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADLPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHR--SGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  ERYIKAALELAEKQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  ++   D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLTTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  DGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E +L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAESKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGR 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       ++ +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDISAIPLDDQQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMRM-GLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKNGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q  +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQQNLEDALRASDQHAKDEALGQADMFGVLTETNEEVENSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRIAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N LP  +YY   +  + 
Sbjct: 1069 MTIDEARARYAKSLAICLSQE---QITPQFIKQFKGILQPYSGNSLPVHIYYQSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPID 1130
             +K  + + V P D
Sbjct: 1125 LVKMGVQWSVNPTD 1138


>gi|120599537|ref|YP_964111.1| DNA polymerase III subunit alpha [Shewanella sp. W3-18-1]
 gi|120559630|gb|ABM25557.1| DNA polymerase III, alpha subunit [Shewanella sp. W3-18-1]
          Length = 1157

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1157 (42%), Positives = 730/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GDIG A+  G N   E+    +   F + +++E+ R  +P+    
Sbjct: 122  LTYNEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A     P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVALAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ NT+EIAKRCN+ +   +  LP FPT  +++I DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I K+  K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL+++PP++N   + F   ++ D    +I 
Sbjct: 779  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLTLIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDSLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQ--QFVECIPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFN-RTFNISILKKILLRFK-CKNGLPFVLYYCINKSIKYEMKFPL 1122
            I  AR  + K   V  +      ++L  I       ++G   VL        K + +   
Sbjct: 1071 IGEARSHFAKALEVDLDAEKLTPAVLDSIEQAMSPWRSGAVPVLINYSQTLAKGQFRLAD 1130

Query: 1123 NYKVQPIDDLKLALINL 1139
            +++V P D+L  AL +L
Sbjct: 1131 SWRVNPSDELVFALESL 1147


>gi|424042749|ref|ZP_17780424.1| DNA polymerase III subunit alpha [Vibrio cholerae HENC-02]
 gi|408887434|gb|EKM26026.1| DNA polymerase III subunit alpha [Vibrio cholerae HENC-02]
          Length = 1159

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1155 (42%), Positives = 734/1155 (63%), Gaps = 36/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L LL  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTLLAADNLGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +G+I LSGA  G+IG A+  G   + E+    + + FPD FY+E+ R  + +    
Sbjct: 122  AELSEGVIVLSGAKNGEIGKALLKGNRKVVESCVAFYQEYFPDRFYLELVRTGRSDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A    LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ EQ  +
Sbjct: 182  LHFAIELAEETQLPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTKTTN-FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  ++  +  +   +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  +F    +   +    Y +VP+W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV  + +  N    ++   +L       +P  +YY      +  +    
Sbjct: 1073 GTAREKYARGLSVSIDAKQINDKFFEQFTRILEPHKAGTVPVNVYYQ-RADARARLTLGT 1131

Query: 1123 NYKVQP----IDDLK 1133
             ++V P    +DDLK
Sbjct: 1132 EWRVTPSDALLDDLK 1146


>gi|343500509|ref|ZP_08738401.1| DNA polymerase III subunit alpha [Vibrio tubiashii ATCC 19109]
 gi|418477300|ref|ZP_13046433.1| DNA polymerase III subunit alpha [Vibrio tubiashii NCIMB 1337 = ATCC
            19106]
 gi|342820225|gb|EGU55051.1| DNA polymerase III subunit alpha [Vibrio tubiashii ATCC 19109]
 gi|384575040|gb|EIF05494.1| DNA polymerase III subunit alpha [Vibrio tubiashii NCIMB 1337 = ATCC
            19106]
          Length = 1159

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1155 (42%), Positives = 730/1155 (63%), Gaps = 36/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+ +TD +NL G++KFY +A+  GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMGLTDFTNLCGLVKFYGTAHGCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L ++  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFVMQSPEFGDELTKLTVIAADNVGYKNLTLLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +G+I LSGA  G+IG A+  G  ++ E     +   FPD FY+E+ R  + +    
Sbjct: 122  AELSEGVIILSGAKSGEIGKALLKGNQNVVEQCVEFYQTHFPDRFYLELVRTGRADEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ +  L +T F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQHDLPVVATNDVVILDETLFDAHEIRVAIHDGYTLEDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +    +  Y  RL+ E+E I  M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDPAVRAERRPEYDDRLKIELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  +N+EE+++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K      ++  +PL D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKDPVAIESIPLEDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++ DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLKVLPPDINAGLYRFN--VDEDG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q  LF        +    Y KV  W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQHHQAEAFGQTDLFGVLTEAPEEVEHKYTKVEPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV  +++  N    ++   +L       +P  +YY  + + +  +    
Sbjct: 1073 GTAREKYARGLSVSIDQSQINDRFFERFSQILEPHRAGSVPVHVYYQRSDA-RARLTLGT 1131

Query: 1123 NYKVQP----IDDLK 1133
             ++V P    +DDLK
Sbjct: 1132 EWRVTPSDALLDDLK 1146


>gi|28899077|ref|NP_798682.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus RIMD
            2210633]
 gi|260876841|ref|ZP_05889196.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034]
 gi|260897273|ref|ZP_05905769.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466]
 gi|308125447|ref|ZP_05775347.2| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
 gi|28807301|dbj|BAC60566.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus RIMD
            2210633]
 gi|308085355|gb|EFO35050.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466]
 gi|308091396|gb|EFO41091.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034]
 gi|308113977|gb|EFO51517.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
          Length = 1159

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1161 (42%), Positives = 733/1161 (63%), Gaps = 48/1161 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L +L  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  GDIG A+  G   + E+    + + F D FY+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFQDRFYLELIRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I++A   +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ + E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRIESIPLEDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDD-----NNNLKEYLN-YVKVPSWSKKQ 945
              R  ++AS++ A+K A +     +Q   F   D      +  +E  N Y +VP W +K 
Sbjct: 893  PHRAAMMASLNDAVKAASQH----HQAEAFGQGDMFGVLTDAPEEVENKYTQVPPWPEKV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTY 1002
             L  E++ LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT 
Sbjct: 949  WLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTK 1008

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A +
Sbjct: 1009 RGTRIGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSARE 1068

Query: 1062 IFDINVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
            + D+  AR  Y +  SV       N  F      +IL   K    +P  +YY      + 
Sbjct: 1069 VMDLGSAREKYARGLSVSIDANQINDQF-FEQFSRILEPHKAGT-VPVNVYYQ-RADARA 1125

Query: 1117 EMKFPLNYKVQP----IDDLK 1133
             +     ++V P    IDDLK
Sbjct: 1126 RLTLGTEWRVTPSDTLIDDLK 1146


>gi|285018805|ref|YP_003376516.1| DNA polymerase III subunit alpha [Xanthomonas albilineans GPE PC73]
 gi|283474023|emb|CBA16524.1| probable dna polymerase III, alpha chain protein [Xanthomonas
            albilineans GPE PC73]
          Length = 1198

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1135 (42%), Positives = 697/1135 (61%), Gaps = 76/1135 (6%)

Query: 4    QFIHLRLHSEYSIIDGLLRIND--------------VIEAAANDYQPALAITDLSNLFGI 49
            +F HL +H+E+S+ D  +R+ +              ++  A     PALA+TDL+NLF +
Sbjct: 5    RFAHLHIHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFAL 64

Query: 50   IKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE-NI 108
            +KFYK+A   GIKPI G D+ I +   ++ P RL +L +N +GYL L  LL++A++E + 
Sbjct: 65   VKFYKAAEGVGIKPIAGADLLIADG--SQAPWRLTVLCRNRDGYLSLSRLLTRAWLEGHR 122

Query: 109  NYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
            + G   +R EWL+     D L AL+G +    G     GR+D+AE     W +IF D  +
Sbjct: 123  SEGGVALRPEWLQSGS--DNLFALAGRN-SLAGRLASEGRHDLAEQQLADWQRIFGDGLH 179

Query: 169  IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
            +E+ R  +       Q  ++ A    LP+VA++ ++FL  ++F AHE R CI+ G +L +
Sbjct: 180  LELTRTGRDGEEAFNQFALHAAGMRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDD 239

Query: 229  TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNI 288
             KR ++++ +Q  K+  EM  LF DIP A+ NT+ +A+RCNL+++ G   LP +P P + 
Sbjct: 240  PKRPREYSDQQYLKSAEEMAALFADIPDALDNTLALAQRCNLQMQLGTYFLPAYPVPDDE 299

Query: 289  NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSD 348
             ++ ++ S+S+ GL  RL    K P      +  Y +RL+FE++TIIKM F GYFLIV+D
Sbjct: 300  TLDSWIRSQSRDGLAARL---EKHPLAPGKTRQDYVERLEFELDTIIKMGFPGYFLIVAD 356

Query: 349  FIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDF 408
            FIQW K   IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDF
Sbjct: 357  FIQWGKQQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDF 416

Query: 409  CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468
            C + RD VI YV  +YG+D VSQI+T+GTMAAK  +RD GRVL   Y   D ++KLIP  
Sbjct: 417  CMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGLVDGVAKLIPNI 476

Query: 469  PGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
             G  ITL +A+ E        P+L +R ++EE+VR LI+LA+Q+E + RN G HAGGV+I
Sbjct: 477  LG--ITLKDAMGEGKDSEMAAPELIQRYQSEEDVRDLIDLARQLEDLTRNAGKHAGGVVI 534

Query: 522  APSKLINFCPLYKQEGMTGI----ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK 577
            AP+ L +FCPL+ +  +  +    ++Q+DKDD+E++GL+KFDFLGL TL+I+D   + +K
Sbjct: 535  APTPLSDFCPLFAEHDVDHLGKNPVTQFDKDDVEQVGLVKFDFLGLRTLTIID---WAVK 591

Query: 578  KINTKTTN-----FSLNKLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
             IN +          +  +PL+D  TY ++    +T AVFQ ES GM+ +LK+AKPD FE
Sbjct: 592  AINVRHARAGIPAVEITAIPLDDVPTYKDIFASGSTGAVFQFESSGMRRLLKDAKPDRFE 651

Query: 632  EIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
            ++IAL+SLYRPGPMDLI +F  RKHG +   YPDPRT+ +L +TYGIMVYQEQVMQ+AQI
Sbjct: 652  DLIALVSLYRPGPMDLIPDFNARKHGQQAILYPDPRTEAILKDTYGIMVYQEQVMQMAQI 711

Query: 691  LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
            +GGYSLG ADLLRRA+GKK  +EM +HR+ F+ GA K G+ + KA+EIF+ +EKFAGYGF
Sbjct: 712  VGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFDLMEKFAGYGF 771

Query: 751  NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
            NKSHA AYAL+SY TA+LK HY + FMAA LS  MD+T+K+ +   D ++  GL++ PP 
Sbjct: 772  NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKV-VGFLDEVRNLGLTVRPPR 830

Query: 811  INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRID 869
            IN S Y F            I+YGLGAIKG G+   EAIV ER + G + +L DF  R++
Sbjct: 831  INASAYMF-----EAATPDTIQYGLGAIKGVGRGACEAIVAERERGGAYISLMDFCTRVE 885

Query: 870  KKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNN 927
               +N+R + +LI++GA D  +  R  L+  +   +K  E+   ++   Q SLF N D +
Sbjct: 886  SAKLNKRTLEALIHAGAMDGLDSNRATLMLQLPEVMKATEQMARERASGQNSLFGNADTS 945

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------ 981
                +LN  +   W   Q L  E++ LGF LS H F  Y  E+R+ +   L  L      
Sbjct: 946  APALHLNLPESKEWPLGQLLAGERETLGFYLSGHPFDPYREEVRELVGCDLGALEKICAQ 1005

Query: 982  --------------KPTYSCTVSGIITELKLKTTYRGKILIIV-IDDNSNSVEVIINNQL 1026
                          K  +   VS I+  L +    +G   + V ++D    +E    +  
Sbjct: 1006 SNGGRGRSGEGDGEKRAWRPEVSAILAGLVVGVRRKGDSQVFVQLEDGRGRIECSAFSDA 1065

Query: 1027 YEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN 1081
              +  ++L  + LLIV G V ED F     +   + +D       + ++ S+  +
Sbjct: 1066 LAEFGHLLTRDRLLIVKGGVREDEFNGGYAMRIRQCWDYEQICTHHAQRLSLRLD 1120


>gi|410623479|ref|ZP_11334292.1| DNA polymerase III subunit alpha [Glaciecola pallidula DSM 14239 =
            ACAM 615]
 gi|410156971|dbj|GAC29666.1| DNA polymerase III subunit alpha [Glaciecola pallidula DSM 14239 =
            ACAM 615]
          Length = 1154

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1096 (44%), Positives = 707/1096 (64%), Gaps = 34/1096 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+HS+YS+ DGL ++  ++    +   PA+AITDL N+ G++KFY +A++ G
Sbjct: 1    MSANFVHLRVHSDYSMQDGLNKVKPILAKTKSMNMPAIAITDLMNMCGLVKFYSAAFSIG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +KPIIGCD+W+ +     + +RL L+ KN  GY  + E++S+AY +     +  +R EWL
Sbjct: 61   VKPIIGCDIWLLSSHFPDEITRLTLIAKNIQGYKNITEIISRAYRQGHVQHKVVVRQEWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  Y +G+I LSGA  GD+GIA+     +IA N +  + + F D+FYIE+ R  +    
Sbjct: 121  AE--YAEGVIVLSGALAGDLGIALTKNNPEIANNISAFFRQHFRDHFYIELMRTGRDGEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              I + +  A+  + P+VAT+ + F++   +  HEVR CI+EG  L + +R KK + +Q 
Sbjct: 179  DYIHRAVEWATQNDFPVVATNEVCFIEPEGYEPHEVRVCISEGYTLDDKRRPKKHSAQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             ++  EM  LF DIPSAI N++EIAKRCN +L  G+  LP+FPT  +++  DFL+  S+ 
Sbjct: 239  LRSAEEMTALFKDIPSAIHNSVEIAKRCNAELTLGEYFLPQFPT-GDMSTEDFLVKVSEE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  ++ D    + ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IPV
Sbjct: 298  GLERRLSKIFTDEVERQEKRAEYDERLQRELKVINQMGFPGYFLIVMEFIQWSKDNNIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL + LLFERFLNP R+SMPDFDIDFC + RD VI +V
Sbjct: 358  GPGRGSGAGSLVAYALDITDLDPLEFELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK+IP  PG  +TL  A  
Sbjct: 418  AEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPADPG--MTLEKAFA 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E    +E+V++LI+ A+ +EG+ RN G HAGGV+I+P+ + +F PLY  +    
Sbjct: 476  VEPRLPELYDQDEDVKELIDTARILEGVTRNAGKHAGGVVISPTTITDFSPLYCDDMGAN 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             ++Q+DK+D+E  GL+KFDFLGL TL+I+      I++++    +  + ++PL D   + 
Sbjct: 536  PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWATDMIREVH--GVDVDITQIPLEDPKCFK 593

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+KA T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 594  VLQKAQTTAVFQLESRGMKDLINRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 653

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        +++L  TYGI++YQEQVMQIAQ++ GYSLG ADLLRRA+GKK   
Sbjct: 654  EAISYPDAEYQHECLREILEPTYGIILYQEQVMQIAQVMSGYSLGGADLLRRAMGKKNAE 713

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R+ F+ GA    +    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 714  EMAKQRESFEQGAADNNIDAELSIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 773

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCG---LSILPPNINLSKYYFFPIIESDGKHK 829
             + FM+A +S  MD+T+KI  LV +    CG   L ILPP++N  +Y F   + +DG   
Sbjct: 774  PAEFMSAVMSADMDNTDKIVTLVDE----CGHMNLDILPPDLNAGEYKF--TVNADG--- 824

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  +EAI+  R + G F +LFDF  ++D K +++R++  L+ SGA D
Sbjct: 825  QIVYGIGAIKGVGEGAVEAIIEAREQQGKFKDLFDFCAKVDAKRVSKRVLEKLVLSGAMD 884

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+A+I  AL  A +  K     Q  LF     ++      + KVP WS+K  
Sbjct: 885  NLGPHRAALMATIKDALSAASQHAKAELAGQADLFGVQIESDEDITNAFAKVPEWSEKVW 944

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYR 1003
            L  EK+ LG  L+ H    Y  EI+Q+    L++L PT   +  +  G++  +++ T  +
Sbjct: 945  LDGEKETLGLYLTGHPINQYLKEIKQYTDGRLADLTPTNRDHFISTVGLVIGVRVMTNKK 1004

Query: 1004 GKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G+   I+ +DD S  ++V    + YE+ +++L  + LL V G+V  D F     INA+ +
Sbjct: 1005 GRRWGIVTLDDKSARMDVRFYPETYEQFESVLVSDNLLWVKGQVSFDDFNGGNTINAKDV 1064

Query: 1063 FDINVARILYGKKFSV 1078
              I  AR  Y K+  +
Sbjct: 1065 LTIVQARSKYVKQLKI 1080


>gi|152979519|ref|YP_001345148.1| DNA polymerase III subunit alpha [Actinobacillus succinogenes 130Z]
 gi|150841242|gb|ABR75213.1| DNA polymerase III, alpha subunit [Actinobacillus succinogenes 130Z]
          Length = 1158

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1163 (41%), Positives = 731/1163 (62%), Gaps = 45/1163 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR HS++S+IDG+ ++  +++A   +   A+ +TD +N  G++KFY  A + GIK
Sbjct: 4    PRFVHLRTHSDFSMIDGIAKVKPLVKACVREDMVAMGLTDFTNFCGLVKFYGEALSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PI+G DV +++ +   +   L LL KNN GY  +  LLSKAY    +++ Y    I  +W
Sbjct: 64   PIVGADVLVSSALCGDERFELTLLAKNNEGYKNITLLLSKAYQRGYDDLPY----IDRDW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L ++K  +GLI LSG   GDIG  +   +   AE+    + K FP++FYI + R    + 
Sbjct: 120  LIEHK--EGLIILSGGRRGDIGQKLLKDKFADAESALGFYQKFFPNHFYISLARVGHYDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  +++A    +P+VAT+ + FLK  +F AHE+R  I +G  L + KR + +T +Q
Sbjct: 178  ERYIRAAMDLAKKHRIPLVATNDVVFLKTEDFEAHEIRVAIHDGYTLDDPKRPQLYTPQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM +LF DIP+A++NT+ IA+RCN+ +  G+  LP+FPT   ++  D+L+ ++K
Sbjct: 238  YFRSEQEMCELFADIPTALENTLLIAQRCNVTIRLGQYFLPQFPT-GELSTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ DP++    + +Y +RL+ E+  I +M F GYFLIV +FIQW+K+N +P
Sbjct: 297  DGLEERLEFLFPDPKVRSENRRKYDERLETELGVINQMGFPGYFLIVMEFIQWSKDNGVP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC EGRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAETYGRSAVSQIITFGTMAAKAVIRDVGRVLGHAYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EP+L E   ++EEV++LI++A+++EG+ RN G HAGGV+I+P+K+ +F PLY      
Sbjct: 475  DMEPKLQEAYDSDEEVKELIDMARKLEGVTRNAGKHAGGVVISPTKITDFSPLYCDSEGR 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARMVREGKPEVRIESIPLDDPE 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LL  + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFKLLLNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYG+++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDAEYQHISLKPILESTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGIDGKLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             H+ + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S   H 
Sbjct: 775  AHFPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINTGKHHF-----SVNDHG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIEALVKARNEGGIFKDLFDLCARVDLKQINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+++ +  K   I Q  +F      + +    Y   P W++KQ 
Sbjct: 889  KLGPHRAALAKNLEDALQSSNQFAKDEAIGQADMFGVLTAGHEEVERKYANTPRWTEKQI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P  L +L P       T  G+I   +   T +
Sbjct: 949  LDGERETLGLYLSSHPISRYLKELSHYTPNRLKDLVPNQRGQMTTACGLIVSSRFAVTKK 1008

Query: 1004 GKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  L I  +DD S  +++ +  +  +     L+++ +++V G+V  D F + +R++  ++
Sbjct: 1009 GSRLGIASLDDRSGRLDITLFAEALDNYAEKLQKDAIVVVRGQVSFDDFTQGLRMSVREL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKCK------NGLPFVLYYCINKSIKY 1116
              ++ AR  Y K  ++   +     I  + + +FK          +P  +YY   +  + 
Sbjct: 1069 TTLDEARSQYAKSLAISLKQE---QITPQFIRKFKTAIEPFNDGTMPINVYYDSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPIDDLKLALINL 1139
             +K  + + ++P DDL  AL+ +
Sbjct: 1125 LLKLGVQWYIKPTDDLLSALVEM 1147


>gi|419803159|ref|ZP_14328333.1| DNA polymerase III, alpha subunit [Haemophilus parainfluenzae HK262]
 gi|419844490|ref|ZP_14367778.1| DNA polymerase III, alpha subunit [Haemophilus parainfluenzae HK2019]
 gi|385188329|gb|EIF35816.1| DNA polymerase III, alpha subunit [Haemophilus parainfluenzae HK262]
 gi|386417150|gb|EIJ31637.1| DNA polymerase III, alpha subunit [Haemophilus parainfluenzae HK2019]
          Length = 1159

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1168 (42%), Positives = 739/1168 (63%), Gaps = 45/1168 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLR H+++S+IDG+ ++  +++A A D   ALA+TD +N  G+++FY    + GIKP
Sbjct: 6    RFVHLRTHTDFSMIDGIAKVKPLVKACAADNMVALALTDFTNFCGVVRFYGETLSSGIKP 65

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE---NINYGRAEIRIEWL 120
            IIG DV + +++  ++   L LL KNN GY  +  LLSKAY     ++ Y    I  EWL
Sbjct: 66   IIGADVHVKSDLCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGYVDLPY----IDREWL 121

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               ++++G+I LSG   GDI   +    +  AE+    + + F D+FY+ + R  +P+  
Sbjct: 122  --IEHREGVIILSGGTQGDIAKKLLKENSSEAESAVSFYQEFFSDHFYLSLSRTGRPDEE 179

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K++T++Q 
Sbjct: 180  RYIQAALKLAEEHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDPKRPKRYTEQQY 239

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF DIPSA++NT+ IA+RCN+ L  G+  LP+FPT   ++  D+L+ K+K 
Sbjct: 240  FRSEEEMCDLFADIPSALENTVLIAQRCNVTLRLGQYFLPQFPT-GELSTEDYLVMKAKE 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 299  GLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +V
Sbjct: 359  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK+IP  PG  +TL  A +
Sbjct: 419  ADTYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPPDPG--MTLDKAFE 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+PS + +F PLY       
Sbjct: 477  AEPQLQVAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITDFAPLYCDNEGLH 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLND 595
             ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  IN +          +  +PL+D
Sbjct: 537  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINARLAREGKPPVDIAAIPLDD 593

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
             +++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  
Sbjct: 594  PESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFID 653

Query: 654  RKHG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIG 707
            RKHG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+G
Sbjct: 654  RKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMG 713

Query: 708  KKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAY 767
            KKK  EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +
Sbjct: 714  KKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773

Query: 768  LKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK 827
            LKTH+ + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +
Sbjct: 774  LKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINVGKHHF-----SVNE 827

Query: 828  HKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
            + +I YG+GAIKG G+  I+A++T R + G F +LFD   R+D K INRR   SLI SGA
Sbjct: 828  NGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESLIMSGA 887

Query: 887  FDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKK 944
            FD     R  L  +++ ALK +++  K   + Q  +F      + +    Y   P +++K
Sbjct: 888  FDKLGPHRAALSKNLEDALKASDQHAKDEAMGQADMFGVLTETHEEVENAYAHTPPYTEK 947

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTT 1001
            Q L  E++ LG  LS H    Y  E+  +    L +L P       T +G++   +  TT
Sbjct: 948  QILDGERETLGLYLSSHPVTRYLKELSHYSSTRLKDLTPNRRGQISTAAGLLVATRFATT 1007

Query: 1002 YRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             +G +I I  IDD S  +++ +  +  ++    L+++ +++VSG+V  D F   ++++  
Sbjct: 1008 KKGNRIGIATIDDRSGRLDLTLFGESLDQFGEKLQKDTVVVVSGQVSFDDFSGGLKMSVR 1067

Query: 1061 KIFDINVARILYGKKFSVMFN-RTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYE 1117
             +  ++ AR  Y K  ++  +    + S +KK+  +L       LP  +YY   K  +  
Sbjct: 1068 DLMTLDEARSRYAKSLAISLSEEQISPSFIKKLKEMLEPVSGGTLPINVYYQSAKG-RAL 1126

Query: 1118 MKFPLNYKVQPIDDLKLALINLGLYNAI 1145
            ++  + + + P D++   L+NL   NA+
Sbjct: 1127 LRLGIQWSITPTDEILTELVNLLGENAV 1154


>gi|444377194|ref|ZP_21176427.1| DNA polymerase III alpha subunit [Enterovibrio sp. AK16]
 gi|443678659|gb|ELT85326.1| DNA polymerase III alpha subunit [Enterovibrio sp. AK16]
          Length = 1159

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1158 (42%), Positives = 734/1158 (63%), Gaps = 36/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A + G+K
Sbjct: 4    PRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQSTGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  +  +   +   ++ +L  NN GY  L  L+SKAY+      +  I  +WL +
Sbjct: 64   PIIGADFKMQTDAFGEDLCQITVLAANNIGYKNLTLLISKAYLRGHIQHQPVIDQDWLVE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K  +GLI LSG   GD+G A+  G   +A   A  +   FPD +YIE+ R  +P+    
Sbjct: 124  LK--EGLIILSGGRRGDLGKALLKGNAGLANQCAAFYQTHFPDAYYIELMRTGRPDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   ++ A+  +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q+ +
Sbjct: 182  LHFALDFAAEHDLPVVATNEVCFLTADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQHLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF+DIP A+ NT+EIAKRCN+ +   +  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  SEEEMCELFHDIPEALANTVEIAKRCNVTVRLNEYFLPAFPT-EGMEETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E     +  Y +RL+ E+E I  M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEEERLKRRPEYDERLEVELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFVAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E  + +EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PQLGEIYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     ++      +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLERSGQEPVRIESIPLEDAASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  VLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEISYPDATWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRATFESGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV++  +   L++LPP++N   Y F     +  +  +I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVGLVEEC-RRMKLTMLPPDVNAGLYRF-----NVNEKGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G++ IE I+  R+  G+F +LFDF  RID K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEAPIENIIKARQEGGYFRDLFDFCARIDTKKVNKRVIEKLIQSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  + AS+D ALK+A +    +   Q  +F    +   +    Y KVP W  K  L  
Sbjct: 893  PHRAAMTASLDDALKSASQHHQAEAFGQTDMFGVLTDAPEEVEHKYAKVPPWPDKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E++ +I   L +   T      TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPINSYVKELKHYITWRLEDAHATKRDVVSTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   EK  ++++++ +L+VSG+V  D F   ++++A ++ DI
Sbjct: 1013 IGILTLDDRSGRMEVMLFSDALEKYLDLIEKDRILVVSGQVSFDDFNGGLKMSAREVLDI 1072

Query: 1066 NVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y +  ++ + +R  +    ++   +L       +P  LYY  + + + ++    
Sbjct: 1073 SQAREKYLRGLAISVTDRQIDNKFFERFSEILEPHRAGTVPVNLYYQRDDA-RAKLVLGT 1131

Query: 1123 NYKVQP----IDDLKLAL 1136
             +++ P    IDDLK  L
Sbjct: 1132 EWRITPDDKLIDDLKTLL 1149


>gi|300993595|ref|ZP_07180451.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
 gi|422362662|ref|ZP_16443223.1| DNA polymerase III subunit alpha [Escherichia coli MS 153-1]
 gi|300406518|gb|EFJ90056.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
 gi|315294588|gb|EFU53935.1| DNA polymerase III subunit alpha [Escherichia coli MS 153-1]
          Length = 1144

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|375134464|ref|YP_004995114.1| DNA polymerase III subunit alpha [Acinetobacter calcoaceticus PHEA-2]
 gi|325121909|gb|ADY81432.1| DNA polymerase III, alpha chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 1187

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1164 (43%), Positives = 713/1164 (61%), Gaps = 39/1164 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D++ AA  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            ++G  + +     +    R  LL  +N G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   LLGSTIRL-----DDAQHRATLLAMSNVGWKSLTEIVSRGFIEGQQLSIPCVKKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     A      W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ+FKT
Sbjct: 174  QEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQHFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT  IAKRCN+ L+ G   LP +P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKVGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLDYLYPVEKRSEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
            E  T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K         ++ +PL+D
Sbjct: 533  EDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLIISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  AKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+FG +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  ASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP+ L+E+  T    V+ +   L +        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPVKLNEITATRR-GVTTVYAGLVIDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E    +       K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFERPMGRLTKAFTLNEIRQKR 1062

Query: 1073 GKKFSVMFNRTFNISILKK----ILLRFKCKNGL--PFVLYYCINKS-IKYEMKFPLNYK 1125
                 +     F  + L K    I+L F C   +     L   I++   + E++    +K
Sbjct: 1063 ANSIQIKLTEEFMQATLAKDLQNIILPF-CNVDMHQHITLQLLIDQPYAQAELQLGPQWK 1121

Query: 1126 VQPIDDLKLALIN-LGLYNAIIEY 1148
            V P+D+L   L +  G  N  IEY
Sbjct: 1122 VAPLDELLAKLRDYFGKDNIYIEY 1145


>gi|375266412|ref|YP_005023855.1| DNA polymerase III subunit alpha [Vibrio sp. EJY3]
 gi|369841732|gb|AEX22876.1| DNA polymerase III subunit alpha [Vibrio sp. EJY3]
          Length = 1159

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1157 (42%), Positives = 731/1157 (63%), Gaps = 40/1157 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGISKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ ++L +L  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQLTVLAADNVGYKNLTLLISKAYLRGHIQHQPVIDKSWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   GDIG A+  G  ++ ++    + + FPD +Y+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGGKNGDIGKALLKGNRNLVQSCVEFYKQHFPDRYYLELLRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A  ++LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVELAEQVDLPVVATNEVVFLSSDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMKETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDPG--MTLDKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++   +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  +          +  +PL+D+ ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDQASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYTQVPPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
              AR  Y +  SV       N  F      +IL   K    +P  +YY      +  +  
Sbjct: 1073 GSAREKYARGLSVSIDANQINDQF-FEQFSRILEPHKAGT-VPVNVYYQ-RADARARLTL 1129

Query: 1121 PLNYKVQP----IDDLK 1133
               ++V P    IDDLK
Sbjct: 1130 GTEWRVTPSDTLIDDLK 1146


>gi|440731275|ref|ZP_20911309.1| DNA polymerase III subunit alpha [Xanthomonas translucens DAR61454]
 gi|440374114|gb|ELQ10854.1| DNA polymerase III subunit alpha [Xanthomonas translucens DAR61454]
          Length = 1196

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1136 (42%), Positives = 692/1136 (60%), Gaps = 79/1136 (6%)

Query: 4    QFIHLRLHSEYSIIDGLLRIND--------------VIEAAANDYQPALAITDLSNLFGI 49
            +F HL +H+E+S+ D  +R+ +              ++  A     PALA+TDL+NLF +
Sbjct: 5    RFAHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELELPALAVTDLNNLFAL 64

Query: 50   IKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE-NI 108
            +KFYK+A   GIKPI G D+ I +    + P RL +L +N +GYL L  LL++A++E + 
Sbjct: 65   VKFYKAAEGVGIKPIAGADLSIADSA-GETPWRLTVLCRNRDGYLSLSRLLTRAWLEGHR 123

Query: 109  NYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
            N G   IR EWL+     D L AL+G      G     GR+D+AE     W +IF D  +
Sbjct: 124  NEGGVAIRPEWLQTGS--DNLFALAG-RSSLAGRLASEGRHDLAEQQLADWQRIFGDGLH 180

Query: 169  IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
            +E+ R  +       Q  ++ A    LP+VA++ ++FL  ++F AHE R CI+ G +L +
Sbjct: 181  LELTRTGRDGEEAFNQFALHAAGTRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDD 240

Query: 229  TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNI 288
             KR + ++ +Q  K+  EM  LF DIP A+ NT+ +A+RCN++++ G   LP +P P + 
Sbjct: 241  PKRPRDYSDQQYLKSSEEMAALFADIPDALDNTLALAQRCNIEMQLGTYFLPAYPVPDDE 300

Query: 289  NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSD 348
             ++ ++ S+S+ GL  RL    K P      +  Y  RL+FE++TIIKM F GYFLIV+D
Sbjct: 301  TLDSWIRSQSRDGLAARL---EKHPLAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVAD 357

Query: 349  FIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDF 408
            FIQW KN  IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDF
Sbjct: 358  FIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDF 417

Query: 409  CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468
            C + RD VI YV  +YG+D VSQI+T+GTMAAK  +RD GRVL   Y   D ++KLIP  
Sbjct: 418  CMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGLVDGVAKLIPNI 477

Query: 469  PGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
             G  ITL +A+ E        P+L +R ++E++VR L++LA+Q+E + RN G HAGGV+I
Sbjct: 478  LG--ITLKDAMGEGKDSEMASPELIQRYQSEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 535

Query: 522  APSKLINFCPLYKQEGMTGI----ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK 577
            AP+ L +FCPL+ +  +  +    ++Q+DKDD+E++GL+KFDFLGL TL+I+D   + +K
Sbjct: 536  APTPLSDFCPLFAEHDVDNLGRNPVTQFDKDDVEQVGLVKFDFLGLRTLTIID---WAVK 592

Query: 578  KINTKTTN-----FSLNKLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
             IN +          +  +PL+D  TY  +    NT AVFQ ES GM+ +LK+AKPD FE
Sbjct: 593  AINVRHARAGIPPLDITAIPLDDAPTYKGIFASGNTGAVFQFESSGMRRLLKDAKPDRFE 652

Query: 632  EIIALISLYRPGPMDLIKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
            ++IAL+SLYRPGPMDLI +F  RKHG+    YPDPRT+ +L +TYGIMVYQEQVMQ+AQI
Sbjct: 653  DLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQI 712

Query: 691  LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
            +G YSLG ADLLRRA+GKK  +EM +HR+ F+ GA K G+ + KA+EIF+ +EKFAGYGF
Sbjct: 713  VGAYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGQAKADEIFDLMEKFAGYGF 772

Query: 751  NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
            NKSHA AYAL+SY TA+LK HY + FMAA LS  MD+T+K+ +   D ++  GL++LPP 
Sbjct: 773  NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKV-VGFLDEVRNLGLTVLPPR 831

Query: 811  INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRID 869
            +N S Y F            I+YGLGAIKG G+   EAIV ER + G + +L DF  R++
Sbjct: 832  LNASAYMF-----EAATPDTIQYGLGAIKGVGRGACEAIVAERERGGDYVSLLDFCTRVE 886

Query: 870  KKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNN 927
               +N+R + +LIN+GA D     R  L+  +   +K  E+   ++   Q SLF   D +
Sbjct: 887  SAKLNKRTLEALINAGAMDGLGSNRATLMLQLPEVMKATEQMARERASGQNSLFGGADTS 946

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------ 981
                +L+  +   W   Q L  E++ LGF LS H F  Y  E+R+ +   LS L      
Sbjct: 947  APALHLDLSESKEWPLGQLLTGERETLGFYLSGHPFDPYREEVRELVGCDLSALEKICAQ 1006

Query: 982  ----------------KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ 1025
                            +P  S  ++G +  L+ K   +   + + ++D    VE      
Sbjct: 1007 SGGGRGGGGDGEKRAWRPEISAILAGQVVGLRRKGDSQ---VFVQLEDGRGRVECSAFTD 1063

Query: 1026 LYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN 1081
               +  ++L  + +LIV G V ED F     +   + +D       + ++ S+  +
Sbjct: 1064 AIAEFGHLLTRDRILIVKGGVREDEFNGGYAMRIRQCWDYEQICTHHAQRLSLRLD 1119


>gi|417671045|ref|ZP_12320546.1| DNA polymerase III subunit alpha [Shigella dysenteriae 155-74]
 gi|332097598|gb|EGJ02575.1| DNA polymerase III subunit alpha [Shigella dysenteriae 155-74]
          Length = 1144

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+  +K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKSAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGNA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|294671267|ref|ZP_06736119.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp.
            glycolytica ATCC 29315]
 gi|291306994|gb|EFE48237.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp.
            glycolytica ATCC 29315]
          Length = 997

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/982 (47%), Positives = 649/982 (66%), Gaps = 16/982 (1%)

Query: 162  IFPDNFYIEIQRF-KQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCI 220
            +FP+ FY+E+QR  ++P     +     +A  +NLP+VATHP QFL+  +FLAHE R CI
Sbjct: 18   LFPNAFYLELQRLPEKPEWERSVAGSTALARKLNLPVVATHPTQFLEPEDFLAHEARVCI 77

Query: 221  AEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLP 280
            AEG  L++ KR ++F+  Q F     M + F D+P A++NT+EIAKRCN+ +  GK  LP
Sbjct: 78   AEGWTLADRKRPREFSPSQYFVGAETMAERFADLPEALENTVEIAKRCNIHITLGKNFLP 137

Query: 281  KFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFS 340
             FPTP  ++++D+L+  S  GL++R++ LY D      +   Y++RL FE+  II+M F 
Sbjct: 138  LFPTPDGLSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFP 197

Query: 341  GYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRIS 400
            GYFLIV DFI WAK +  PVGPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+S
Sbjct: 198  GYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVS 257

Query: 401  MPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDS 460
            MPDFD+DFC   R RVI+YV+++YG +AVSQIVTFGTM++K  IRDVGRVL+L ++ CD 
Sbjct: 258  MPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDK 317

Query: 461  ISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVL 520
            +SKLIP +  K + L +A+K EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVL
Sbjct: 318  LSKLIPLEANKPLGLDDAMKAEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVL 376

Query: 521  IAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKIN 580
            IAP K+ ++ P+Y+ +     +S YDK D+E++GL+KFDFLGL  L+I++     IK  N
Sbjct: 377  IAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--N 434

Query: 581  TKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLY 640
            T      +  +PL+D+  Y + + ANT AVFQ ES GMK MLK A    FEE+IA +SLY
Sbjct: 435  TTGDIVDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLY 494

Query: 641  RPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQAD 700
            RPGPMD I +F  R  G+ F Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG AD
Sbjct: 495  RPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 554

Query: 701  LLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYAL 760
            LLRRA+GKKK  EM++HR+ F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL
Sbjct: 555  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 614

Query: 761  LSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFP 820
            +SY TA+LK HY + FMAA +S  + DT+++K+  +DA+   G++ LPP+IN S Y F P
Sbjct: 615  ISYQTAWLKAHYPAEFMAATMSSELTDTDQLKLFYEDALAN-GITFLPPDINESDYLFTP 673

Query: 821  IIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINS 880
                DG+ + IRY LGA+KG G+  +++IV  R+ G F +LFDF +R+ K+++N+R + S
Sbjct: 674  ----DGE-RHIRYALGAVKGVGEGAVQSIVEARQDGRFRDLFDFCERVGKEHMNKRTLES 728

Query: 881  LINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS 940
            LI +GAFD  N  R ML+A+ID+A+ NAE+     NQ  LF  D   +    +  V+   
Sbjct: 729  LIKAGAFDGTNPNRAMLLANIDLAIGNAEQQAANANQGGLF--DFAEDAIGAIEMVETAP 786

Query: 941  WSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKT 1000
            W    +L EEK V+GF  S H F  Y  EIR+F P  LS+LKP  S  V+G  T ++   
Sbjct: 787  WGDAVKLAEEKSVIGFYFSGHPFGPYAEEIRRFAPQKLSKLKPQDSVRVAGFATAIRTIM 846

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRF-LKNIRINA 1059
               GK+  + ++D   S E I+  +L E++KNILK +++LI+  ++  + +    +RINA
Sbjct: 847  GKNGKLAFVRLEDTEGSAEAIVAGELLEQSKNILKTDQVLIMECRISRNDYNGGELRINA 906

Query: 1060 EKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC--KNGLPFVLYYCINKSIKYE 1117
              +  +  AR  + +  ++      +I  L  +L +++   + G+P  + Y  N + + E
Sbjct: 907  NSVMTLPQAREKFARNLTLTCRPEHDIEALLNLLAQYRSSGREGIPLRVRYR-NDTAEGE 965

Query: 1118 MKFPLNYKVQPIDDLKLALINL 1139
            +     +++    +L   L NL
Sbjct: 966  LDLQRRWQINANAELFEQLQNL 987


>gi|429076457|ref|ZP_19139687.1| DNA polymerase III subunit alpha [Escherichia coli 99.0713]
 gi|427335532|gb|EKW96562.1| DNA polymerase III subunit alpha [Escherichia coli 99.0713]
          Length = 1144

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1138 (42%), Positives = 723/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++  T      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHSTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K +++L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|261496138|ref|ZP_05992546.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. OVINE]
 gi|261308240|gb|EEY09535.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. OVINE]
          Length = 1158

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1126 (43%), Positives = 720/1126 (63%), Gaps = 34/1126 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++ A  +   A+ +TD +N  G++KFY  A   GIKP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIEN-INYGRAEIRIEWLEK 122
            IIG DV++  E  ++    L LL KNN GY  + ++LSKAY +  I +   E   EWL  
Sbjct: 65   IIGADVYVRTEAGSEDYFELTLLAKNNKGYHNITQILSKAYQQGYIEFPMVER--EWL-- 120

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +G+I LSG  +GD+G A+       AE     + + +P++FY+ + R  + +    
Sbjct: 121  AELNEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRTGRADEERY 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I+Q +  +    +P+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q F+
Sbjct: 181  IKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFR 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM KLF D+PSA+ NT+EIAKRC++ +  G+  LP FPT   ++  DFL+ KSK GL
Sbjct: 241  TEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPT-GELSTEDFLVKKSKEGL 299

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE    ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 300  EERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 359

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 360  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 419

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL  A   E
Sbjct: 420  TYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLEKAFAAE 477

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY        +
Sbjct: 478  PKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPV 537

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  + L+DK ++ 
Sbjct: 538  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETISLDDKKSFA 597

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL  A T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKHG 
Sbjct: 598  LLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGK 657

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPDP+      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+GKKK  
Sbjct: 658  EEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPE 717

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM   R+ F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 718  EMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 777

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI +   D     GL+++PP++N  K+ F     S  +  +I 
Sbjct: 778  PAEFMAAVMTSEMDNTDKI-VGFYDECMNMGLTVVPPDVNSGKHRF-----SVNEKGEIV 831

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGAIKG G+  IEAI+  R K G F +LFD T R+D K INRR   SLI SGAFD   
Sbjct: 832  YGLGAIKGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLG 891

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L  
Sbjct: 892  PHRAALMKNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDG 951

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E+  LG  LS H    +  E+  + P  L+EL+PT+     TVSGI+   ++  T RG +
Sbjct: 952  ERATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSR 1011

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I  I+D S  +++ + ++  E   ++++++++++ +G V  D F   ++++A ++  +
Sbjct: 1012 IGIATIEDRSGKLDITLFSEALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSL 1071

Query: 1066 NVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYY 1108
            + AR  + K  ++  ++   +   +KK+  ++    +  LP   YY
Sbjct: 1072 DEARGRFAKSLALAISKEQLSADFIKKMTAIITPHKEGTLPLHFYY 1117


>gi|226945926|ref|YP_002800999.1| DNA polymerase III subunit alpha [Azotobacter vinelandii DJ]
 gi|226720853|gb|ACO80024.1| DNA polymerase III alpha subunit [Azotobacter vinelandii DJ]
          Length = 1176

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1171 (41%), Positives = 731/1171 (62%), Gaps = 52/1171 (4%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M   F+HLR+H+E+S++DGL+R+  +I+A A    PA+A+TD SN+  ++KFYK+A   G
Sbjct: 1    MSVSFVHLRVHTEFSLVDGLVRVKPLIKAVAGAGMPAVAVTDQSNMCSLVKFYKAAMAGG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINY-GRAEIRIEW 119
            +KPI G D+W+ +   +   SRL LL  +  GY  L EL+S+ + E  +  G   I+ +W
Sbjct: 61   VKPICGADIWLASAEPDAPLSRLTLLAMDAKGYRNLTELVSRGWTEGQHGDGLVIIQRDW 120

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            +++    +G+IALSGA  G+IG A+ NG  D A      W  +FP+ FY+E+QR  +   
Sbjct: 121  VKEAA--EGVIALSGAKEGEIGQALLNGHVDQAAALLEEWLAVFPERFYLEVQRTGRVGD 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +   + +A     P+VAT+ ++FLK+ +F AHE R CI EG  L + +R + ++ +Q
Sbjct: 179  EEYLHAAVELADRYGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLGDPRRPRNYSDQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              KT +EM +LF D+P A++N++EIA+RCN+++  GK  LP FP P  + I+D+L   + 
Sbjct: 239  YLKTPAEMWELFSDLPEALENSVEIARRCNIEVRLGKYFLPNFPVPAGMTIDDYLRQVAY 298

Query: 300  HGLKKRLLNLYKDPEI--YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
             GL++RL  L+       Y  ++  Y +RL+FE+ TII+M F GYFLIV DFI+WAKNN 
Sbjct: 299  EGLEERLAVLWPQETTPDYADKREVYVERLEFELNTIIQMGFPGYFLIVMDFIKWAKNNG 358

Query: 358  IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
            +PVGPGRGSGA SLVAY+L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC +GRDRVI
Sbjct: 359  VPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVI 418

Query: 418  QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
             YV D YG++AVSQI+TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  
Sbjct: 419  DYVADTYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLEK 476

Query: 478  AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
            A ++E  L E +KN+EE +++ ++A ++EGI R  G HAGGV+IAP+KL +F P+     
Sbjct: 477  AYEQEEMLREFLKNDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDAD 536

Query: 538  MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILD---KTIYFIKKINTKTTNFSLNKLPLN 594
              G+++Q+DKDD+E  GL+KFDFLGL TL+I+    +TI+  ++   +T    ++++ L+
Sbjct: 537  GGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETIHREQRRRGETELVDIDRIALD 596

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            DK TY LL++A T AVFQLES+GMK ++K+ KPD  E++IAL++L+RPGP+   ++ +F 
Sbjct: 597  DKATYALLQRAETTAVFQLESRGMKELIKKLKPDNIEDMIALVALFRPGPLQSGMVDDFI 656

Query: 653  RRKHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG    +YP P       + VL  TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+
Sbjct: 657  NRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAM 716

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F  G  K G+    A  IF+ +EKFAGYGFNKSH+ AY L+SY TA
Sbjct: 717  GKKKPEEMAKQRGGFVEGCAKNGIDAELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTA 776

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKT Y + FMAA LS  M +T+K+  L+++  ++  L I+ P++N S++ F   ++ +G
Sbjct: 777  WLKTRYPAPFMAAVLSADMHNTDKVVTLIEEC-RSMKLRIVAPDVNNSEFMF--TVDDEG 833

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSG 885
               +I YGLGAIKG G+  +EAIV  R  G  FT+LFDF  R+D K IN+R + +LI  G
Sbjct: 834  ---RIVYGLGAIKGVGEGPVEAIVECRAAGGPFTDLFDFCARVDLKRINKRTLEALIRGG 890

Query: 886  AFDCF---------------NEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNN 927
            A D                 +  R +L+A+++ A++ AE+T +  +   L LF       
Sbjct: 891  ALDRLGPYFADEPKAYQANIDRNRAVLLAAVEEAVQAAEQTARSADSGHLDLFGGLFAEP 950

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
                Y N+      S K  L  EK  LG  L+ H    YE E+R+F    + EL+P    
Sbjct: 951  EADVYANHRNARELSLKDRLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELRPAREL 1010

Query: 988  -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
             T++G+I  L++    +G K+  I +DD S  +E  +    +   + +L+ + L++V G+
Sbjct: 1011 QTIAGLIVNLRVMKNKKGDKMGFITLDDRSARIEASLFADAFAGAQALLQTDALVVVEGE 1070

Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTF----NISILKKILLRFKCKNG 1101
            V  D F   +R+ A+++  +  AR    +   +           +  L ++  R+  +  
Sbjct: 1071 VSNDDFSGGLRLRAKRVMSLEEARTGLAESLRLRVASEALEGDRLRWLAELCSRY--RGA 1128

Query: 1102 LPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
             P  L Y I +  +  ++F   +++ P D L
Sbjct: 1129 CPITLDY-IGREARALLQFGEAWRIDPADSL 1158


>gi|85059906|ref|YP_455608.1| DNA polymerase III subunit alpha [Sodalis glossinidius str.
            'morsitans']
 gi|84780426|dbj|BAE75203.1| DNA polymerase III alpha subunit [Sodalis glossinidius str.
            'morsitans']
          Length = 1160

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1151 (41%), Positives = 727/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR+HS+YS+IDGL++I  +++ AA  + PALAITD +NL G++KFY SA+  GIK
Sbjct: 4    PHFIHLRVHSDYSMIDGLVKIGPLVKKAAALHMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ + +   + + L +L  NN GY  L  L+S AY          I  +WL  
Sbjct: 64   PIIGADFFVQSGMLGDELAELTILAANNVGYQHLTLLISDAYKRGYGAAGPVIDRDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSGA  GD+G  +  G     E     + + FPD +Y+E+ R  + +    
Sbjct: 122  IEHNEGLILLSGARKGDVGKFLMRGNMPQVEQCLAFYERYFPDRYYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ ++F    +F AHE+R  I  G  L + KR + ++ +Q  +
Sbjct: 182  LHAAVELAARRGLPVVATNDVRFTSPDDFDAHEIRVAIHNGFTLDDAKRPRNYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF D+P A+ N++EIA+RCN+ +  G+  LP+FPT   ++  D+L+  ++ GL
Sbjct: 242  SEEEMCELFADLPEALANSVEIARRCNVTIRLGEYFLPQFPT-GEMSTEDYLVKCAREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++ + ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLAFLFPDADMRREKRPAYDERLAIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L+ITD+DPL+++LLFERFLNP R+SMPDFD+DFC E RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALNITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL  A   E
Sbjct: 421  TYGDDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLEKAFVAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL    + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLQAIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDGEGNHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++         +  +PL+DK +++
Sbjct: 539  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLEPIDIAAIPLDDKKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        + VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDIEWQHASLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRSVFKAGAESIGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++  GL +LPP+IN  +Y+F   +  +G   +I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECLRM-GLKVLPPDINSGQYHFH--VNPEG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R + G F  LFD   R D K +NRR++  LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNQDGHFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A++  K   I Q  +F            +Y  V  W ++  L  
Sbjct: 893  PHRAALMNSLCDALKAADQHAKAEAIGQGDMFGVLAEEPAAVEASYSTVAPWPEQVVLDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
            E++ LG  L+ H    Y  EI ++   + L ++ PT      T  G++   ++  T RG 
Sbjct: 953  ERETLGLYLTGHPITQYLREIERYAGGVRLKDIHPTDRGKMVTAVGLVLSARVMVTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I +  +DD S  ++V++   + EK +++L+++ +LI  G+V  D F   +++ A ++ D
Sbjct: 1013 RIGVCTLDDRSGRLDVMLFTDVLEKYQHLLEKDRILIAQGQVSFDDFNGGLKMTARELMD 1072

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  Y +  ++ + +R  +  +L ++ L  +      +P  LYY   +  +  ++F 
Sbjct: 1073 ISEAREKYARGLAISLTDRQIDDQLLNRLRLSLEPHRSGTIPVHLYYQ-RQYARARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V P   L
Sbjct: 1132 ATWRVTPTGRL 1142


>gi|420378479|ref|ZP_14877983.1| DNA polymerase III subunit alpha [Shigella dysenteriae 225-75]
 gi|391307420|gb|EIQ65153.1| DNA polymerase III subunit alpha [Shigella dysenteriae 225-75]
          Length = 1144

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1138 (42%), Positives = 722/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMA+K  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMASKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI +++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y    +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVYPSDRL 1126


>gi|32035303|ref|ZP_00135310.1| COG0587: DNA polymerase III, alpha subunit [Actinobacillus
            pleuropneumoniae serovar 1 str. 4074]
 gi|126208577|ref|YP_001053802.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 5b str. L20]
 gi|307263773|ref|ZP_07545379.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
 gi|126097369|gb|ABN74197.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 5b str. L20]
 gi|306870894|gb|EFN02632.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
          Length = 1158

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  AE--LNEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYLALCRTGRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GIEWRVTPKDEMLDQLKALLGENAV 1153


>gi|307261584|ref|ZP_07543252.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
 gi|306868707|gb|EFN00516.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
          Length = 1158

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  --AELNEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLALCRTGRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GIKWRVTPKDEMLDQLKALLGENAV 1153


>gi|307246021|ref|ZP_07528103.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|307255002|ref|ZP_07536820.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|307259438|ref|ZP_07541163.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
 gi|306852956|gb|EFM85179.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|306861875|gb|EFM93851.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|306866374|gb|EFM98237.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
          Length = 1158

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  --AELNEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLALCRTGRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GIEWRVTPKDEMLDQLKALLGENAV 1153


>gi|307257156|ref|ZP_07538928.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
 gi|306864318|gb|EFM96229.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
          Length = 1158

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  --AELNEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLALCRTSRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GIEWRVTPKDEMLDQLKALLGENAV 1153


>gi|307250356|ref|ZP_07532305.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
 gi|306857631|gb|EFM89738.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
          Length = 1158

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  --AELNEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLALCRTGRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCVLFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GIEWRVTPKDEMLDQLKALLGENAV 1153


>gi|165976527|ref|YP_001652120.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
 gi|165876628|gb|ABY69676.1| DNA polymerase III alpha subunit [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
          Length = 1158

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  --AELNEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLALCRTGRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P AI+NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCALFADLPQAIENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSIYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GIEWRVTPKDEMLDQLKALLGENAV 1153


>gi|433678485|ref|ZP_20510338.1| DNA polymerase III subunit alpha [Xanthomonas translucens pv.
            translucens DSM 18974]
 gi|430816410|emb|CCP40827.1| DNA polymerase III subunit alpha [Xanthomonas translucens pv.
            translucens DSM 18974]
          Length = 1197

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1137 (42%), Positives = 694/1137 (61%), Gaps = 80/1137 (7%)

Query: 4    QFIHLRLHSEYSIIDGLLRIND--------------VIEAAANDYQPALAITDLSNLFGI 49
            +F HL +H+E+S+ D  +R+ +              ++  A     PALA+TDL+NLF +
Sbjct: 5    RFAHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELELPALAVTDLNNLFAL 64

Query: 50   IKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE-NI 108
            +KFYK+A   GIKPI G D+ I +    + P RL +L +N +GYL L  LL++A++E + 
Sbjct: 65   VKFYKAAEGVGIKPIAGADLLIADSA-GETPWRLTVLCRNRDGYLSLSRLLTRAWLEGHR 123

Query: 109  NYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
            N G   IR EWL+     D L AL+G      G     GR+D+AE     W +IF D  +
Sbjct: 124  NEGGVAIRPEWLQTGS--DNLFALAG-RSSLAGRLASEGRHDLAEQQLADWQRIFGDGLH 180

Query: 169  IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
            +E+ R  +       Q  ++ A    LP+VA++ ++FL  ++F AHE R CI+ G +L +
Sbjct: 181  LELTRTGRDGEEAFNQFALHAAGTRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDD 240

Query: 229  TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNI 288
             KR + ++ +Q  K+  EM +LF DIP A+ NT+ +A+RCN++++ G   LP +P P N 
Sbjct: 241  PKRPRDYSDQQYLKSSEEMAELFADIPDALDNTLALAQRCNIEMQLGTYFLPAYPVPDNE 300

Query: 289  NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSD 348
             ++ ++ S+S+ GL  RL    K+P      +  Y  RL+FE++TIIKM F GYFLIV+D
Sbjct: 301  TLDSWIRSQSRDGLAARL---EKNPLAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVAD 357

Query: 349  FIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDF 408
            FIQW KN  IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDF
Sbjct: 358  FIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDF 417

Query: 409  CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468
            C + RD VI YV  +YG+D VSQI+T+GTMAAK  +RD GRVL   Y   D ++KLIP  
Sbjct: 418  CMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGLVDGVAKLIPNI 477

Query: 469  PGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
             G  ITL +A+ E        P+L +R ++E++VR L++LA+Q+E + RN G HAGGV+I
Sbjct: 478  LG--ITLKDAMGEGKDSEMASPELIQRYQSEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 535

Query: 522  APSKLINFCPLYKQEGMTGI----ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK 577
            AP+ L +FCPL+ +  +  +    ++Q+DKDD+E++GL+KFDFLGL TL+I+D   + +K
Sbjct: 536  APTPLSDFCPLFAEHDVDNLGKNPVTQFDKDDVEQVGLVKFDFLGLRTLTIID---WAVK 592

Query: 578  KINTKTTN-----FSLNKLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
             IN +          +  +PL+D  TY  +    NT AVFQ ES GM+ +LK+AKPD FE
Sbjct: 593  AINVRHARAGIPPVDITAIPLDDAPTYKGIFASGNTGAVFQFESSGMRRLLKDAKPDRFE 652

Query: 632  EIIALISLYRPGPMDLIKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
            ++IAL+SLYRPGPMDLI +F  RKHG+    YPDPRT+ +L +TYGIMVYQEQVMQ+AQI
Sbjct: 653  DLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQI 712

Query: 691  LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
            +G YSLG ADLLRRA+GKK  +EM +HR+ F+ GA K G+ + KA+EIF+ +EKFAGYGF
Sbjct: 713  VGAYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFDLMEKFAGYGF 772

Query: 751  NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
            NKSHA AYAL+SY TA+LK HY + FMAA LS  MD+T+K+ +   D ++  GL++LPP 
Sbjct: 773  NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKV-VGFLDEVRNLGLTVLPPR 831

Query: 811  INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRID 869
            +N S Y F            I+YGLGAIKG G+   EAIV ER + G + +L DF  R++
Sbjct: 832  LNASAYMF-----EAATPDTIQYGLGAIKGVGRGACEAIVAERERGGEYASLLDFCTRVE 886

Query: 870  KKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNN 927
               +N+R + +LIN+GA D     R  L+  +   +K  E+   ++   Q SLF   + +
Sbjct: 887  SAKLNKRTLEALINAGAMDGLGSNRATLMLQLPEVMKATEQMARERASGQNSLFGGANTS 946

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------ 981
                +L+  +   W   Q L  E++ LGF LS H F  Y  E+R+ +   LS L      
Sbjct: 947  APALHLDLSESKEWPLGQLLTGERETLGFYLSGHPFDPYREEVRELVGCDLSALEKICAQ 1006

Query: 982  -----------------KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN 1024
                             +P  S  ++G +  ++ K   +   + + ++D    VE     
Sbjct: 1007 SGGGRGGGGGDGEKRAWRPETSAILAGQVVGVRRKGDSQ---VFVQLEDGRGRVECSAFT 1063

Query: 1025 QLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN 1081
                +  ++L  + +LIV G V ED F     +   + +D       + ++ S+  +
Sbjct: 1064 DAIAEFGHLLTRDRILIVKGGVREDEFNGGYAMRIRQCWDYEQICTHHAQRLSLRLD 1120


>gi|303250150|ref|ZP_07336352.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|307252740|ref|ZP_07534631.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|302651213|gb|EFL81367.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|306859772|gb|EFM91794.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
          Length = 1158

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  --AELNEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLALCRTGRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GIEWRVTPKDEMLDQLKALLGENAV 1153


>gi|301049902|ref|ZP_07196828.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
 gi|300298355|gb|EFJ54740.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
          Length = 1144

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1138 (42%), Positives = 721/1138 (63%), Gaps = 33/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + + L +L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG 
Sbjct: 61   LGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G ++  G + + +     + + FPD +++E+ R  +P+    +   + +A    L
Sbjct: 119  RMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP
Sbjct: 179  PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E 
Sbjct: 239  EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+
Sbjct: 298  RLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL
Sbjct: 476  KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQL
Sbjct: 536  VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA
Sbjct: 656  SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G++   A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  A
Sbjct: 830  IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            LK A++  K   I Q  +F        +   +Y     W ++  L  E++ LG  L+ H 
Sbjct: 890  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
               Y  EI ++   + L ++ PT      T +G++   ++  T RG +I I  +DD S  
Sbjct: 950  INQYLKEIERYAGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1009

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +EV++     +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  +
Sbjct: 1010 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1069

Query: 1078 V-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
            + + +R  +  +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1070 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1126


>gi|190150430|ref|YP_001968955.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
 gi|189915561|gb|ACE61813.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
          Length = 1201

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 48   RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 107

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 108  IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 163

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 164  AE--LNEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYLALCRTGRADEE 221

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 222  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 281

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 282  FRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 340

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 341  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 400

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 401  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 460

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 461  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 518

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 519  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 578

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 579  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 638

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 639  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 698

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 699  GNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 758

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 759  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 818

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 819  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 872

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 873  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 932

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 933  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 992

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 993  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1052

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1053 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1112

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1113 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1171

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1172 GIEWRVTPKDEMLDQLKALLGENAV 1196


>gi|198283301|ref|YP_002219622.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC
            53993]
 gi|198247822|gb|ACH83415.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
          Length = 1167

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/1077 (43%), Positives = 683/1077 (63%), Gaps = 28/1077 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF+HL +HSEYS+ DG++ +  +    A    PA+AITD  NLF ++KFY +A  +G+K
Sbjct: 5    PQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQGVK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG +VW+ +  E ++P  L+LL  +  GY  L  LLS+AY+E   +GR +I + WLE 
Sbjct: 65   PLIGSEVWVHDVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGSRHGRPQIDVAWLEG 124

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +   DGLIALS A  G+IG A+Q      AE+ AR ++++FP+ FY+E+QR  +      
Sbjct: 125  SS--DGLIALSAAGQGEIGRALQRHPQQ-AESRARYYARLFPERFYLEVQRNGEAEQEAL 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q  + +A  ++LP+VAT+   FL   +F A + R CI+ G  L + +R ++FT E    
Sbjct: 182  VQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRLP 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
               EM + F D+P A  NT+EIA+RCN++L  G   LP +P P N +++++L   ++ GL
Sbjct: 242  DPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQSVDEYLHDAAQKGL 301

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L     I     L Y +RL  E+  I +M F GYFLIV+DFIQWAKNN +PVGP
Sbjct: 302  QERLQEL----RITGDATLPYHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVGP 357

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+   LLFERFLNP R+SMPDFD+DFC + RDRVIQYV D
Sbjct: 358  GRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVAD 417

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG+D V QI+TFGTM A+  +RDVGRVL L Y F D ++KL+P   G  +TL+ A++E 
Sbjct: 418  KYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLG--MTLAKALEES 475

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK--QEGMTG 540
             +L  R   E++VR L+++A ++EG+ R+   HAGGV+I+P  L +  PL+    EG  G
Sbjct: 476  EELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFNDGSEG-GG 534

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDT 598
             ++Q DKDD+E++GL+KFDFLGL TL+I+D  +  I           ++  +LPL+D  T
Sbjct: 535  NVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDIQQLPLDDAAT 594

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + LLK   T AVFQLES GM+++++  +PD FE+I+AL++L+RPGP+   ++ +F  RKH
Sbjct: 595  FALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKH 654

Query: 657  GE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+    Y  P    +L ETYG++VYQEQVMQ AQ L GYSLG ADLLRRA+GKKK  EM 
Sbjct: 655  GKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRAMGKKKPEEMA 714

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R  F  GA K GL+  +A  IF+ +EKFA YGFNKSH+ AYAL+SY TAYLK HY  F
Sbjct: 715  KQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPQF 774

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FM+A L+  MD T+K+  ++ +  +  GL I PP++  S   F P  E D     IR+GL
Sbjct: 775  FMSAVLTADMDHTDKVVAMIAECAR-MGLRIAPPSVQHSVLEFRP--EGD---DHIRFGL 828

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            GAIKG G++ I+AI+  R+ G F NLFD   R+D + INRR + +LI +GA D +   R 
Sbjct: 829  GAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRA 888

Query: 896  MLVASIDVALKNAE--KTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
             L+AS+D  ++ A   ++ +   Q SLF   +   +   L  V   +WS  + L +E++ 
Sbjct: 889  SLIASVDGCMEAAAQFQSSQASLQESLFSGQEALRVAPPL--VSAEAWSLTETLRQERET 946

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRG-KILIIVID 1012
            LGF LS H       ++     I L ++    +  V+G++   +   T RG +I  + +D
Sbjct: 947  LGFYLSGHPMDSLRDDLTALGTIPLGDVAVGSTVLVAGLVVARRSTRTKRGDRIYFLTLD 1006

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
            D    +EV++  +++ +   I +  E ++V G+V ED +   +R++A ++ D   AR
Sbjct: 1007 DGQGRLEVVVFGEVWARAGKIREGEEPVLVLGEVGEDSYSGGLRLSALRLLDTAQAR 1063


>gi|149192145|ref|ZP_01870366.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1]
 gi|148834015|gb|EDL51031.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1]
          Length = 1159

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1108 (43%), Positives = 713/1108 (64%), Gaps = 40/1108 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A++ G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGNAHSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG D  + ++    + +R+ +L  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PLIGADFAVQSDEFGDELTRITVLAADNTGYNNLTLLISKAYLRGHIQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  GD+G A+  G   +A+  A+ +   FPD +Y+E+ R  +P+    
Sbjct: 122  VELSEGLIVLSGAKEGDVGKALLKGNTTLAKQCAQFYQTHFPDRYYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A  ++LP+VAT+ + F+ K  F AHE+R  I +G  L + KR KK++ +Q  +
Sbjct: 182  LHFAVELAEELDLPVVATNEVVFVDKELFDAHEIRVAIHDGYTLDDPKRPKKYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M +LF DIP A+QN++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  SEEDMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPAFPT-EGMKETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  +    +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLEFLFPDEAVRAERRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPADPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L +    +EEVR LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPQLYDGDEEVRDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVRIESIPLDDSASFQ 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAVFEEGAINNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   + F     +  +   I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLKVLPPDINAGLFRF-----NVNEEGAIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+ I+  R K G F +LFDF  RID K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPIDVIIEARNKGGHFRDLFDFCARIDIKKVNKRVIEKLIMSGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQEL 947
              R  ++AS++ A+K A +    +   Q  +F    D   +++    Y +VP W +K  L
Sbjct: 893  PHRAAMMASLNDAVKAASQHHQAEAFGQADMFGVLTDAPEDVEH--KYTQVPPWPEKVWL 950

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG 1004
              E++ LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG
Sbjct: 951  EGERETLGLYLTGHPINAYLKELTKYTSCRLKDATPTRRDQSLTVAGLVIAARVMTTKRG 1010

Query: 1005 -KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
             +I ++ +DD S  +EV++ +   +K   +L+++++++VSG+V  D F   ++++  ++ 
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLFSDALDKYAELLEKDKIVVVSGQVSFDDFNGGLKMSGREVL 1070

Query: 1064 DINVARILYGKKFSVMFNRTFNISILKK 1091
            D+  AR    +KF+    R  +IS+L++
Sbjct: 1071 DLGSAR----EKFT----RGVSISLLEQ 1090


>gi|37680725|ref|NP_935334.1| DNA polymerase III subunit alpha [Vibrio vulnificus YJ016]
 gi|326423901|ref|NP_760750.2| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|37199474|dbj|BAC95305.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|319999277|gb|AAO10277.2| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 1159

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1161 (42%), Positives = 734/1161 (63%), Gaps = 42/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DG+ ++  +++  A    PA+A+TD +NL G++KFY +A+  GIK
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L +L  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFKMQSPEFGDELTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSGA  G+IG A+  G   + E+    + + F D FY+E+ R  + +    
Sbjct: 122  IELSEGLIILSGARNGEIGKALLKGNQKLVESCVDFYQQHFADRFYVELIRTGRSDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A   +LP+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAIELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +   +  LP FPT + +   +FL+ KSK GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPT-EGMAETEFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPEI    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  +          +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  ILQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS+D A+K A +    +   Q  +F    +   +    Y++V  W +K  L  
Sbjct: 893  PHRAALMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYIQVEPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y TE+ ++    L +  PT    S T++G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   E+  ++L+++++L+VSG+V  D F   +++ A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALERYADLLEKDKILVVSGQVSFDDFNGGLKMTAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFK-----CKNG-LPFVLYYCINKSIKYEMK 1119
              AR  Y +  SV    +    I  +   RF       K G +P  +YY      +  + 
Sbjct: 1073 GSAREKYARGVSVSIAAS---QIDDQFFERFSRILEPHKAGTIPVNVYYQ-RADARARLT 1128

Query: 1120 FPLNYKVQP----IDDLKLAL 1136
                ++V P    +D+LK+ L
Sbjct: 1129 LGTEWRVTPSDTLLDELKMLL 1149


>gi|407692762|ref|YP_006817551.1| DNA polymerase III subunit alpha [Actinobacillus suis H91-0380]
 gi|407388819|gb|AFU19312.1| DNA polymerase III subunit alpha [Actinobacillus suis H91-0380]
          Length = 1158

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1165 (42%), Positives = 736/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++ A  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKTAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  --AELNEGIIVLSGGRNGDVGKALLKENEAEADELVSFYQQYFPNHYYLALCRTGRTDEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GHEEVSYPDAQYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAISQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GVEWRVTPKDEMLDQLKTLLGENAV 1153


>gi|255020984|ref|ZP_05293039.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
 gi|254969589|gb|EET27096.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
          Length = 1166

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1084 (42%), Positives = 690/1084 (63%), Gaps = 30/1084 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL +HSEYS+ DG++ I  +I    +   PA+A+TD  NLF ++KFY++A   G+K I
Sbjct: 6    FVHLHVHSEYSLEDGIIPIKALIRRCVDWGMPAIAVTDHGNLFALVKFYQAAREAGVKAI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG +VW+    + + PS L+LL ++  G+  L  LLS+ Y+E + +GR +++ +WL+   
Sbjct: 66   IGSEVWLCPPDQPEDPSSLVLLCRDRTGFRNLSRLLSRGYLEGLRHGRPQLQHDWLQG-- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
            + +GLIALS A  GD+G A+   + D+A  +A R+++ FP+ FY+E+QR  +P     + 
Sbjct: 124  HTEGLIALSAAARGDVGRALLQHQPDVARQWAERYAQWFPEAFYLELQRNGEPGQEALLA 183

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              +++A  ++LP+VAT+   FL   +F A + R CIA G  L + +R ++F  E    + 
Sbjct: 184  ATVDLAYALDLPVVATNNAHFLDAEDFKAFDARQCIAAGYTLDDERRPRRFNPEHRLASP 243

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM++ F D+P A   T+EIAKRC ++L  G+  LP +PTP    I+ +    ++ GL +
Sbjct: 244  AEMLERFRDLPEACLQTVEIAKRCTVELTLGRYALPDYPTPDGSPIDVYFQKAAEQGLAE 303

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  L  D          Y++RL  E++ I +M F GYFLIV+DFIQWAK++ +PVGPGR
Sbjct: 304  RLEALGID----GAAATPYRERLLREVDVIRQMGFPGYFLIVADFIQWAKDHDVPVGPGR 359

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DP++Y LLFERFLN  R+SMPDFD+DFC E RDRVIQYV D+Y
Sbjct: 360  GSGAGSLVAYALRITDLDPIAYGLLFERFLNVERVSMPDFDVDFCMEQRDRVIQYVADKY 419

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+D V QI+TFGT+ A+  +RDVGRVL+L Y F D ++KL+P   G  +TL+ A++E  +
Sbjct: 420  GRDRVGQIITFGTLKARAVVRDVGRVLNLPYGFVDQLAKLVPGDLG--MTLARALEESEE 477

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ--EGMTGII 542
            L  R   E++VR+L+++A ++EG  R+   HAGGV+I P  L +  PL+    EG +G +
Sbjct: 478  LRRRQTEEDDVRELLDIALRLEGRPRHASTHAGGVVIGPEPLADRLPLFSDATEG-SGNV 536

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q DKDD+E++GL+KFDFLGL TL+ILD  +  I +        +L+  K+PL+D  T+ 
Sbjct: 537  TQLDKDDVEKMGLVKFDFLGLRTLTILDIAVKGINRARAAEGKAALDLQKIPLDDPATFA 596

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LLK  +TVAVFQLES GM+++L+  +PD F +I+AL++L+RPGP+   ++ +F  RKHG 
Sbjct: 597  LLKSTHTVAVFQLESSGMRDLLRRLQPDNFGDIVALVALFRPGPLQSGMVDDFIARKHGR 656

Query: 659  -YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
               +YP P  K VL+ETYG+MVYQEQVMQ AQIL GYSLG AD+LRRA+GKKK  EM + 
Sbjct: 657  AAVSYPHPDLKPVLAETYGVMVYQEQVMQAAQILAGYSLGGADILRRAMGKKKPEEMAKQ 716

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            R+ F  GA + G+  H+A  IF+ +EKFA YGFNKSH+ AYAL+SY TAYLK HY S FM
Sbjct: 717  REIFLQGAARRGIDSHQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPSHFM 776

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
            AA L+  MD T+KI  ++ +  +  GL+IL P++  S   F P+ E       IR+GLGA
Sbjct: 777  AAVLTADMDHTDKIVAMIGE-CRRMGLAILSPSVQHSALEFLPVAEG------IRFGLGA 829

Query: 838  IKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            IKG G+  ++AI+  R+  G F + +DF  R+D + +NRR + +LI +GA D     R  
Sbjct: 830  IKGLGRGAVQAIIAAREADGPFRDFYDFLCRVDLQRLNRRALEALIKAGALDDLGPSREC 889

Query: 897  LVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
            L+AS+D  L+ A +T+  +   Q+SL    +         + + P+W+  + L  E++ L
Sbjct: 890  LLASLDAFLEAAAQTRAARDSQQISLLGAAEEQ--PSAPPWREAPAWTGIERLQRERETL 947

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRG-KILIIVID 1012
            GF LS H    +  ++       L  L        V+GI+   +   + RG +I  + ++
Sbjct: 948  GFYLSGHPLLEHRPQLAAMGAQDLGGLTAGSGLVLVAGIVVGRRSTRSKRGDRIYFLTLE 1007

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D     +V++  + +++ +   + +  L+V G++ ED +   +R+ A+++  ++ AR L 
Sbjct: 1008 DEVGRCDVVVFAETWQRAEYRGEGDAPLLVLGEIAEDSYSGGLRLTAQRLLALDQARTLL 1067

Query: 1073 GKKF 1076
             +  
Sbjct: 1068 AETL 1071


>gi|340781600|ref|YP_004748207.1| DNA polymerase III subunit alpha [Acidithiobacillus caldus SM-1]
 gi|340555753|gb|AEK57507.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus SM-1]
          Length = 1166

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1084 (42%), Positives = 690/1084 (63%), Gaps = 30/1084 (2%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL +HSEYS+ DG++ I  +I    +   PA+A+TD  NLF ++KFY++A   G+K I
Sbjct: 6    FVHLHVHSEYSLEDGIIPIKALIRRCVDWGMPAIAVTDHGNLFALVKFYQAAREAGVKAI 65

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            IG +VW+    + + PS L+LL ++  G+  L  LLS+ Y+E + +GR +++ +WL+   
Sbjct: 66   IGSEVWLCPPDQPEDPSSLVLLCRDRTGFRNLSRLLSRGYLEGLRHGRPQLQHDWLQG-- 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
            + +GLIALS A  GD+G A+   + D+A  +A R+++ FP+ FY+E+QR  +P     + 
Sbjct: 124  HTEGLIALSAAARGDVGRALLQHQPDVARQWAERYAQWFPEAFYLELQRNGEPGQEALLA 183

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              +++A  ++LP+VAT+   FL   +F A + R CIA G  L + +R ++F  E    + 
Sbjct: 184  ATVDLAYALDLPVVATNNAHFLDAEDFKAFDARRCIAAGYTLDDERRPRRFNPEHRLASP 243

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
            +EM++ F D+P A   T+EIAKRC ++L  G+  LP +PTP    I+ +    ++ GL +
Sbjct: 244  AEMLERFRDLPEACLQTVEIAKRCTVELTLGRYALPDYPTPDGSPIDVYFQKAAEQGLAE 303

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            RL  L  D          Y++RL  E++ I +M F GYFLIV+DFIQWAK++ +PVGPGR
Sbjct: 304  RLEALGID----GAAATPYRERLLREVDVIRQMGFPGYFLIVADFIQWAKDHDVPVGPGR 359

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVAY+L ITD+DP++Y LLFERFLN  R+SMPDFD+DFC E RDRVIQYV D+Y
Sbjct: 360  GSGAGSLVAYALRITDLDPIAYGLLFERFLNVERVSMPDFDVDFCMEQRDRVIQYVADKY 419

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQ 484
            G+D V QI+TFGT+ A+  +RDVGRVL+L Y F D ++KL+P   G  +TL+ A++E  +
Sbjct: 420  GRDRVGQIITFGTLKARAVVRDVGRVLNLPYGFVDQLAKLVPGDLG--MTLARALEESEE 477

Query: 485  LAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ--EGMTGII 542
            L  R   E++VR+L+++A ++EG  R+   HAGGV+I P  L +  PL+    EG +G +
Sbjct: 478  LRRRQTEEDDVRELLDIALRLEGRPRHASTHAGGVVIGPEPLADRLPLFSDATEG-SGNV 536

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q DKDD+E++GL+KFDFLGL TL+ILD  +  I +        +L+  K+PL+D  T+ 
Sbjct: 537  TQLDKDDVEKMGLVKFDFLGLRTLTILDIAVKGINRARAAEGKAALDLQKIPLDDPATFA 596

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGE 658
            LLK  +TVAVFQLES GM+++L+  +PD F +I+AL++L+RPGP+   ++ +F  RKHG 
Sbjct: 597  LLKSTHTVAVFQLESSGMRDLLRRLQPDNFGDIVALVALFRPGPLQSGMVDDFIARKHGR 656

Query: 659  -YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
               +YP P  K VL+ETYG+MVYQEQVMQ AQIL GYSLG AD+LRRA+GKKK  EM + 
Sbjct: 657  AAVSYPHPDLKPVLAETYGVMVYQEQVMQAAQILAGYSLGGADILRRAMGKKKPEEMAKQ 716

Query: 718  RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
            R+ F  GA + G+  H+A  IF+ +EKFA YGFNKSH+ AYAL+SY TAYLK HY S FM
Sbjct: 717  REIFLQGAARRGIDSHQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPSHFM 776

Query: 778  AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
            AA L+  MD T+KI  ++ +  +  GL+IL P++  S   F P+ E       IR+GLGA
Sbjct: 777  AAVLTADMDHTDKIVAMIGE-CRRMGLAILSPSVQHSALEFLPVAEG------IRFGLGA 829

Query: 838  IKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            IKG G+  ++AI+  R+  G F + +DF  R+D + +NRR + +LI +GA D     R  
Sbjct: 830  IKGLGRGAVQAIIAAREADGPFRDFYDFLCRVDLQRLNRRALEALIKAGALDDLGPSREC 889

Query: 897  LVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
            L+AS+D  L+ A +T+  +   Q+SL    +         + + P+W+  + L  E++ L
Sbjct: 890  LLASLDAFLEAAAQTRAARDSQQISLLGAAEEQ--PSAPPWREAPAWTGIERLQRERETL 947

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-VSGIITELKLKTTYRG-KILIIVID 1012
            GF LS H    +  ++       L  L        V+GI+   +   + RG +I  + ++
Sbjct: 948  GFYLSGHPLLEHRPQLAAMGAQDLGGLTAGSGLVLVAGIVVGRRSTRSKRGDRIYFLTLE 1007

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D     +V++  + +++ +   + +  L+V G++ ED +   +R+ A+++  ++ AR L 
Sbjct: 1008 DEVGRCDVVVFAETWQRAEYRGEGDAPLLVLGEIAEDSYSGGLRLTAQRLLALDQARTLL 1067

Query: 1073 GKKF 1076
             +  
Sbjct: 1068 AETL 1071


>gi|218665927|ref|YP_002425889.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC
            23270]
 gi|218518140|gb|ACK78726.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
          Length = 1166

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/1077 (43%), Positives = 683/1077 (63%), Gaps = 28/1077 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF+HL +HSEYS+ DG++ +  +    A    PA+AITD  NLF ++KFY +A  +G+K
Sbjct: 4    PQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG +VW+ +  E ++P  L+LL  +  GY  L  LLS+AY+E   +GR +I + WLE 
Sbjct: 64   PLIGSEVWVHDVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGSRHGRPQIDVAWLEG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +   DGLIALS A  G+IG A+Q      AE+ AR ++++FP+ FY+E+QR  +      
Sbjct: 124  SS--DGLIALSAAGQGEIGRALQRHPQQ-AESRARYYARLFPERFYLEVQRNGEAEQEAL 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q  + +A  ++LP+VAT+   FL   +F A + R CI+ G  L + +R ++FT E    
Sbjct: 181  VQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRLP 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
               EM + F D+P A  NT+EIA+RCN++L  G   LP +P P N +++++L   ++ GL
Sbjct: 241  DPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQSVDEYLHDAAQKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L     I     L Y +RL  E+  I +M F GYFLIV+DFIQWAKNN +PVGP
Sbjct: 301  QERLQEL----RITGDATLPYHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVGP 356

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+   LLFERFLNP R+SMPDFD+DFC + RDRVIQYV D
Sbjct: 357  GRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVAD 416

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG+D V QI+TFGTM A+  +RDVGRVL L Y F D ++KL+P   G  +TL+ A++E 
Sbjct: 417  KYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLG--MTLAKALEES 474

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK--QEGMTG 540
             +L  R   E++VR L+++A ++EG+ R+   HAGGV+I+P  L +  PL+    EG  G
Sbjct: 475  EELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFNDGSEG-GG 533

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDT 598
             ++Q DKDD+E++GL+KFDFLGL TL+I+D  +  I           ++  +LPL+D  T
Sbjct: 534  NVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDIQQLPLDDAAT 593

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + LLK   T AVFQLES GM+++++  +PD FE+I+AL++L+RPGP+   ++ +F  RKH
Sbjct: 594  FALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKH 653

Query: 657  GE-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            G+    Y  P    +L ETYG++VYQEQVMQ AQ L GYSLG ADLLRRA+GKKK  EM 
Sbjct: 654  GKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRAMGKKKPEEMA 713

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R  F  GA K GL+  +A  IF+ +EKFA YGFNKSH+ AYAL+SY TAYLK HY  F
Sbjct: 714  KQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPQF 773

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FM+A L+  MD T+K+  ++ +  +  GL I PP++  S   F P  E D     IR+GL
Sbjct: 774  FMSAVLTADMDHTDKVVAMIAECAR-MGLRIAPPSVQHSVLEFRP--EGD---DHIRFGL 827

Query: 836  GAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            GAIKG G++ I+AI+  R+ G F NLFD   R+D + INRR + +LI +GA D +   R 
Sbjct: 828  GAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRA 887

Query: 896  MLVASIDVALKNAE--KTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
             L+AS+D  ++ A   ++ +   Q SLF   +   +   L  V   +WS  + L +E++ 
Sbjct: 888  SLIASVDGCMEAAAQFQSSQASLQESLFSGQEALRVAPPL--VSAEAWSLTETLRQERET 945

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRG-KILIIVID 1012
            LGF LS H       ++     I L ++    +  V+G++   +   T RG +I  + +D
Sbjct: 946  LGFYLSGHPMDSLRDDLTALGTIPLGDVAVGSTVLVAGLVVARRSTRTKRGDRIYFLTLD 1005

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
            D    +EV++  +++ +   I +  E ++V G+V ED +   +R++A ++ D   AR
Sbjct: 1006 DGQGRLEVVVFGEVWARAGKIREGEEPVLVLGEVGEDSYSGGLRLSALRLLDTAQAR 1062


>gi|293608355|ref|ZP_06690658.1| DNA polymerase III [Acinetobacter sp. SH024]
 gi|427422864|ref|ZP_18913038.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-136]
 gi|292828928|gb|EFF87290.1| DNA polymerase III [Acinetobacter sp. SH024]
 gi|425700499|gb|EKU70082.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-136]
          Length = 1187

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1164 (43%), Positives = 714/1164 (61%), Gaps = 39/1164 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D++ AA  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            ++G  + +     +    R  LL  +N G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   LLGSTIRL-----DDAQHRATLLAMSNVGWKSLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     A      W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ+FKT
Sbjct: 174  QEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQHFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
             +EMI+LF DIPSAI+NT  IAKRCN+ L+ G   LP +P P    I+ +    SK GL+
Sbjct: 234  SNEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKVGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLDYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
            E  T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K         ++ +PL+D
Sbjct: 533  EDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLIISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  AKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+FG +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  ASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP+ L+E+  T    V+ +   L +        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPVKLNEITATRR-GVTTVYAGLVIDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E    +       K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFERPMGRLTKAFTLNEIRQKR 1062

Query: 1073 GKKFSVMFNRTFNISILKK----ILLRFKCKNGL--PFVLYYCINKS-IKYEMKFPLNYK 1125
                 +     F  + L K    I+L F C   +     L   I++   + E++    +K
Sbjct: 1063 ANSIQIKLTEEFMQATLAKDLQNIILPF-CNVDMHQHITLQLQIDQPYAQAELQLGPQWK 1121

Query: 1126 VQPIDDLKLALIN-LGLYNAIIEY 1148
            V P+D+L   L +  G  N  IEY
Sbjct: 1122 VAPLDELLAKLRDYFGKDNIYIEY 1145


>gi|90580986|ref|ZP_01236787.1| DNA polymerase III subunit alpha [Photobacterium angustum S14]
 gi|90437864|gb|EAS63054.1| DNA polymerase III subunit alpha [Vibrio angustum S14]
          Length = 1159

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1157 (41%), Positives = 730/1157 (63%), Gaps = 46/1157 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL ++  +++ A+    PALA+TD +NL G++KFY +A++ GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVKPIVKKASELSMPALAMTDFTNLCGLVKFYFAAHDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     +   L +L  NN GY  L  L+S+AY          I  EWL  
Sbjct: 64   PIIGADFKVQSAEMGDELFELTILAANNEGYKNLTLLISEAYQRGHVQHLPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +++GLI LSG   GD+G A+  G   + +     +   FPD++Y+E+ R  + +    
Sbjct: 122  VNHREGLIILSGGKNGDVGKALLKGNQKMVDGLVAFYQTHFPDSYYLELVRTGRADEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ ++ L   +F AHE+R  I +G  L +  R K ++ +Q  +
Sbjct: 182  LHFAVELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPKLYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QN++EIAKRCN+ +  G+  LP FPT  ++ I DFLI+KSK GL
Sbjct: 242  SEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPT-GDMTIEDFLIAKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAARRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDKRDLVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P +PG  +TL+ A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEPG--MTLAKAFDAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +    +EEVR LI++ + +EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  + I       ++  +P++D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLIEQGKEPVNIAAIPMDDPKSFA 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ + AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+IK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D      L +LPP++N   Y F   ++ DG    + 
Sbjct: 779  PAEFMAAVMTADMDNTDKIISLV-DECHRMKLKLLPPDVNKGLYRFN--VDEDG---AVV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  IE I++ R K G F +LFDF  RID K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNL-----KEYLN-YVKVPSWSKKQ 945
              R  ++A++D A+K A +     +Q   F   D   +     +E  N Y  +P    K 
Sbjct: 893  PNRAAMLATLDDAIKAASQH----HQAEAFGQADMFGVLTAAPEEVENKYANIPEAPDKV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTY 1002
             L  E++ LG  L+ H    Y +E++ +    L + + T      TV+G++   ++ TT 
Sbjct: 949  WLEGERETLGLYLTGHPINAYLSELKHYTTWRLKDAQQTGRDKVATVAGLVIAARVMTTK 1008

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I ++ +DD S  +EV++ +   ++  ++L+++++++VSG+V  D F   +R++A +
Sbjct: 1009 RGTRIGLMTLDDRSGRMEVMLFSDALDRYVDLLEKDKIVVVSGQVSFDDFNGGLRMSARE 1068

Query: 1062 IFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIK 1115
            + DI+ AR  + +  ++         I ++   RF           +P  +YY    + +
Sbjct: 1069 VLDISEAREKHLRGLAISVTEQ---QIDEQFFARFSQVLEPHRAGTVPVNVYYQ-RSNAR 1124

Query: 1116 YEMKFPLNYKVQPIDDL 1132
             ++     +++ P D L
Sbjct: 1125 AKLTLGTEWRITPADQL 1141


>gi|52424629|ref|YP_087766.1| DNA polymerase III subunit alpha [Mannheimia succiniciproducens
            MBEL55E]
 gi|52306681|gb|AAU37181.1| DnaE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1159

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1167 (42%), Positives = 739/1167 (63%), Gaps = 52/1167 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+IDG+ ++  +++    +   A+A+TD +N  G++KFY  A   GIK
Sbjct: 4    PRFVHLRVHSDFSMIDGIAKVKPLVKTCVQENMVAMALTDFTNFCGLVKFYGEALGSGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PI+G DV + +++   +   L LL KNN GY  +  LLSKAY    E++ Y    I  +W
Sbjct: 64   PIMGADVSVKSDLCGDEHFELTLLAKNNAGYKNITLLLSKAYQRGYEDVPY----IDQDW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAV-QNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178
            L +  Y +G+I LSG   GD+G  + + G  D  E+    + K FPD++Y+ + R     
Sbjct: 120  LAE--YNEGIIVLSGGRKGDVGKKLLKTGAADEVESAVGFYQKYFPDHYYLSLSRTGHNE 177

Query: 179  MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
                I+  + +A   NLP+VAT+ + FLK  +F AHE+R  I +G  L + KR K ++  
Sbjct: 178  EETYIKTALKLAEKHNLPVVATNDVVFLKSEDFEAHEIRVAIHDGFTLDDPKRPKLYSDR 237

Query: 239  QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
            Q F+++ EM +LF DIPSA++NT+ IA+RCN+ +  G+  LP+FPT   ++  D+LI ++
Sbjct: 238  QYFRSEQEMCELFADIPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GELSTEDYLIKRA 296

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            K GL++RL  L+ D +  + ++  Y +RL  E+  I +M F GYFLIV +FIQW+K+N+I
Sbjct: 297  KDGLEERLKVLFPDEKEREEKRPAYDERLDTELGVINQMGFPGYFLIVMEFIQWSKDNNI 356

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD+VI+
Sbjct: 357  PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDNRDKVIE 416

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            +V D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A
Sbjct: 417  HVADMYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKA 474

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
               EPQL +   ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY     
Sbjct: 475  FDAEPQLQQIYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEG 534

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT-----TNFSLNKLPL 593
               ++ +DK+D+E  GL+KFDFLGL TL+I+    + +  IN +       +  +N +PL
Sbjct: 535  KHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINARMDRDGKPHIDINHIPL 591

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNF 651
            +D +++NLL K+ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF
Sbjct: 592  DDPESFNLLLKSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNF 651

Query: 652  CRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
              RKHG E   YPD +      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA
Sbjct: 652  IDRKHGREEVAYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRA 711

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM + R  F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T
Sbjct: 712  MGKKKPEEMAKQRSVFEKGAIEKGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
             +LKTHY + FMAA ++  MD+T+KI  L  + ++  GL++ PP+IN  K++F     S 
Sbjct: 772  LWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLTVTPPDINTGKHHF-----SV 825

Query: 826  GKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINS 884
              H +I YG+GAIKG G+  IEA+V+ R K G F +LFD   R+D K INRR   SLI S
Sbjct: 826  NDHGEIVYGIGAIKGVGEGPIEALVSAREKGGIFKDLFDLCARVDLKKINRRTFESLIMS 885

Query: 885  GAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWS 942
            GAFD     R  L  +++ ALK +++  K     Q  +F     +  +  + Y   P WS
Sbjct: 886  GAFDKLGPHRAALSKNLEDALKASDQHAKDEAAGQADMFGVLTESPEEVEIAYANTPRWS 945

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLK 999
            +KQ L  E++ LG  LS H    Y  E+  + P  L +L P       T SG++   +  
Sbjct: 946  EKQILDGERETLGLYLSSHPISRYLKELSHYSPNRLKDLVPNIRGQVSTASGLVVASRFA 1005

Query: 1000 TTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
             T +G ++ I  +DD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++
Sbjct: 1006 VTKKGNRLGIATLDDRSGRLDITLFAEALEKFGEKLQKDSVVVVSGQVSFDDFTQGLRMS 1065

Query: 1059 AEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINK 1112
               +  ++ AR  Y K  ++  ++     I  + L RFK          +P  +YY   +
Sbjct: 1066 VRDLMTLDEARSRYAKSLAISLSQQ---QITPQFLKRFKSVIEPYSGGTMPINVYYQSPQ 1122

Query: 1113 SIKYEMKFPLNYKVQPIDDLKLALINL 1139
              +  +K  + + ++P D+L   L+N+
Sbjct: 1123 G-RALLKLGIQWYIKPTDELLSELVNM 1148


>gi|387769908|ref|ZP_10126102.1| DNA polymerase III, alpha subunit [Pasteurella bettyae CCUG 2042]
 gi|386905664|gb|EIJ70423.1| DNA polymerase III, alpha subunit [Pasteurella bettyae CCUG 2042]
          Length = 1159

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1167 (42%), Positives = 732/1167 (62%), Gaps = 52/1167 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+IDG+ ++  +++    +   A+A+TD +N  G++KFY S+   GIK
Sbjct: 4    PRFVHLRVHSDFSMIDGIAKVKPLVKTCVQENMVAMALTDFTNFCGLVKFYGSSLESGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
            PI+G DV + +++   +   L LL KNN GY  +  LLSKAY    E++ Y    I  +W
Sbjct: 64   PIMGADVLVKSQLMGDERFELTLLAKNNEGYKNITLLLSKAYQRGYEDLPY----IDQDW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAV-QNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178
            L   +++DG+I LSG   GD+G  + +N   D  E+    + K FP+++Y+ + R     
Sbjct: 120  L--IEHRDGVIILSGGRNGDVGKKLLKNNATDDVESAVAFYQKYFPEHYYLALTRTGHAE 177

Query: 179  MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
                +Q  I +A    LP+VAT+ + FLK  +F AHE+R  I +G  L + KR K +T++
Sbjct: 178  EETYVQAAIKLAQKHQLPVVATNDVVFLKADDFEAHEIRVAIHDGYTLDDPKRPKLYTEQ 237

Query: 239  QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
            Q F+++ EM  LF DIPSA++NT+ IA+RCN+ +  G+  LP+FPT   ++  D+LI ++
Sbjct: 238  QYFRSEQEMCDLFADIPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GELSTEDYLIKRA 296

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            + GL++RL  L+ D +  + ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N+I
Sbjct: 297  RDGLEERLAVLFPDEQERQEKREIYDQRLETELGVINQMGFPGYFLIVMEFIQWSKDNNI 356

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAYSL ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD+VI+
Sbjct: 357  PVGPGRGSGAGSLVAYSLRITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDNRDKVIE 416

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            +V D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A
Sbjct: 417  HVADMYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPSDPG--MTLAKA 474

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
               EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY     
Sbjct: 475  FDAEPQLQTIYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDSEG 534

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPL 593
               ++ +DK D+E  GL+KFDFLGL TL+I+    + +  IN +          ++ +PL
Sbjct: 535  KHPVTHFDKSDVEYAGLVKFDFLGLRTLTIIK---WALDMINARMEREGKPLVDISHIPL 591

Query: 594  NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNF 651
            +D  ++ LL K+ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF
Sbjct: 592  DDPASFALLLKSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNF 651

Query: 652  CRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
              RKHG E   YPD +      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA
Sbjct: 652  IDRKHGREEVAYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRA 711

Query: 706  IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
            +GKKK  EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T
Sbjct: 712  MGKKKPEEMAKQRSVFEKGAIDKGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771

Query: 766  AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
             +LKTH+ + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S 
Sbjct: 772  LWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINTGKHHF-----SV 825

Query: 826  GKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINS 884
              H +I YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI S
Sbjct: 826  NDHGEIVYGIGAIKGVGEGPIEALVAAREQGGIFKDLFDLCARVDLKKINRRTFESLIMS 885

Query: 885  GAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWS 942
            GAFD     R  L  +++ ALK +++  K     Q  +F     +     + Y   P WS
Sbjct: 886  GAFDKLGPHRAALSKNLEDALKASDQHAKDRAAGQADMFGVLTQSPEDVEIAYANTPRWS 945

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLK 999
            +KQ L  E++ LG  LS H    Y  E+  +    L +L P       T SG++   +  
Sbjct: 946  EKQILDGERETLGLYLSSHPISRYLKELSHYSQNRLKDLVPNIRGQVSTASGLVVASRFA 1005

Query: 1000 TTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
             T +G ++ I  +DD S  +++ +  +  E+    L+++ +++VSG+V  D F + +R++
Sbjct: 1006 MTKKGNRLGIATLDDRSGRLDITLFAEALERFGEKLEKDTVVVVSGQVSYDDFTQGLRMS 1065

Query: 1059 AEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINK 1112
               +  ++ AR  Y K  ++  ++     I  + L +FK          +P  +YY   +
Sbjct: 1066 VRDLMTLDEARSRYAKSLAISLSQQ---QITPQFLKQFKAVIEPYSGGTMPINVYYQSPE 1122

Query: 1113 SIKYEMKFPLNYKVQPIDDLKLALINL 1139
              +  +K  + + ++P DDL   L+N+
Sbjct: 1123 G-RALLKLGVQWYIKPTDDLLGELVNM 1148


>gi|336310925|ref|ZP_08565894.1| DNA polymerase III alpha subunit [Shewanella sp. HN-41]
 gi|335865605|gb|EGM70621.1| DNA polymerase III alpha subunit [Shewanella sp. HN-41]
          Length = 1157

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1158 (41%), Positives = 730/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVVGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GD+G A+  G     E+    +   F D +++E+ R  + +    
Sbjct: 122  VTYNEGILLLSGAKEGDLGKALLKGNGTQVESLCEFYQTHFSDRYFLELIRTGRADEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ NT+EIAKRCN+ +   +  LP FPT  +++I DFL+  SK GL
Sbjct: 242  SEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSKKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP +   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPDPLVRAEKRGEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I ++  K       +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINRVEVKNGRPPVRIEAIPLDDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL+++PP++N   + F     +     +I 
Sbjct: 779  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLTLIPPDVNKGLFKF-----TVDDELRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDTLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRAAMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSVMFNRT-FNISILKKILLRF-KCKNG-LPFVLYYCINKSIKYEMKFP 1121
            I  AR  + K   V  +      +IL  I       +NG +P ++ Y   ++ + + +  
Sbjct: 1071 IGEARSHFAKALEVDLDAAQLTPAILDSIEQAMGPWRNGAVPVLINYSQTQA-RGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P D+L  AL  L
Sbjct: 1130 DGWRVNPSDELVFALETL 1147


>gi|416052823|ref|ZP_11578458.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype e str. SC1083]
 gi|347991615|gb|EGY33078.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype e str. SC1083]
          Length = 1158

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1154 (42%), Positives = 725/1154 (62%), Gaps = 45/1154 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A       A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGSGMVAMGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + +E+   +  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGTDVLVQSELCGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADLPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRA--GVIVLSGGVSGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  ERYIKAALELAEKQQLPVVATNDVCFLQTEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  ++   D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLTTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+KRL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  DGLEKRLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + E +L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAESKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGR 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       ++ +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDISAIPLDDQQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKNGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q+ +F      N +   +Y  +  W +K  
Sbjct: 889  KLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWKEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRVAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N L   +YY   +  + 
Sbjct: 1069 MTIDEARARYAKSLAICLSQE---QITPQFIKQFKGILQPYSGNSLLVHIYYQSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPID 1130
             +K  + + V P D
Sbjct: 1125 LVKMGVQWSVNPTD 1138


>gi|374336399|ref|YP_005093086.1| DNA polymerase III subunit alpha [Oceanimonas sp. GK1]
 gi|372986086|gb|AEY02336.1| DNA polymerase III, alpha subunit [Oceanimonas sp. GK1]
          Length = 1142

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1136 (42%), Positives = 727/1136 (63%), Gaps = 31/1136 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL +I  + +       PALA+TD  NL G+++FY  A+ KG+KPI+G DVW+ +E 
Sbjct: 1    MVDGLSKIGPINKRVQELGYPALALTDEMNLCGLVRFYGDAHGKGLKPIVGTDVWVQSEE 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
              ++  RL LL  +N GY  +  L+S+AY       R  I   WL   ++ DGLI LSG 
Sbjct: 61   LGEQLFRLTLLAMDNTGYQNITLLISRAYERGHIQHRPVIDKAWL--AEHSDGLIILSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              GD+G  +  G   +AE     + + F D +Y+E+ R  + +    +   + +A+   L
Sbjct: 119  REGDVGTYLLKGNQALAEQCLAFYHQHFADRYYLELLRTGRADEESYLHMAVELAAAQQL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + FL K++F AHE+R  I +G  L + +R K+++ EQ  K+  EM +LF DIP
Sbjct: 179  PVVATNEVVFLDKSDFDAHEIRVAIHDGYTLDDKRRPKRYSPEQYLKSPEEMAELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++N++EIAKRCN+ +  G+  LP FPT  +++I DFL+ +S+ GL++RL  L+ DP +
Sbjct: 239  EALENSVEIAKRCNVTVRLGEYFLPDFPT-GDMSIEDFLVKRSEEGLEERLEFLFPDPAV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
               ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RAEKRGEYDERLKIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI++V + YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVAELYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A + EP+L E    +EEV
Sbjct: 418  GTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEVEPKLPELYDQDEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            R LI++A+ +EG+ RN G HAGGV+IAP+K+ +F PLY        ++Q+DK+D+E  GL
Sbjct: 476  RALIDMARILEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGRHPVTQFDKNDVEYAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I+D  +  I     K       +  +P++D+ ++ LLK+  T AVFQL
Sbjct: 536  VKFDFLGLRTLTIIDWALGMINPRLEKEGKPPVDIAAIPIDDQASFQLLKRYETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAVSYPDAQWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKPILEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEEMAKQRAGFEAGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
            +  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA ++  M
Sbjct: 716  VANGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T+K+  LV D  +  GL+++PP++N  +Y F   +  DG    I YG+GAIKG G++ 
Sbjct: 776  DNTDKVVTLV-DECQRMGLTLIPPDVNTGRYRF--TVNDDG---HIVYGIGAIKGVGEAP 829

Query: 846  IEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IE+I+  R+ G  F +LFDF  R+D K +N+R++  LI SGA D     R  L+A+++ A
Sbjct: 830  IESILEARESGGPFRDLFDFCNRVDLKKLNKRVMEKLILSGAMDRLGPHRASLMATLEEA 889

Query: 905  LKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            +K A++  K   + Q  +F      +  E+  +  V  W  K  L  E+  LG  L+ H 
Sbjct: 890  MKAADQHAKAEALGQGDMFGVLVEEDKVEH-AFADVAPWPDKIWLDGERDTLGLYLTGHP 948

Query: 963  FCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSV 1018
               Y  E+RQ+    LSE++P       TV+G++   ++ TT RG ++ I+ +DD S  +
Sbjct: 949  INQYARELRQYTSGRLSEVQPGGRDRVSTVAGLVIASRVMTTKRGNRMGILTLDDKSGRL 1008

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            +V + +   E+ +++L+++++L++SG+V  D F   ++++A ++ DI+ AR  + +  ++
Sbjct: 1009 DVTLFSDALERYESLLEKDKILVISGQVSFDDFSGGLKMSAREVLDISDARERFARGLAL 1068

Query: 1079 MFNRT-FNISILKKIL-LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
              +++  +     ++L +    + G+  V         + E+     ++V P D +
Sbjct: 1069 YIDKSRIDQGFFTQLLDILTPVRAGVCPVRVTYNRPGARAELTLGTEWRVTPTDQM 1124


>gi|254228403|ref|ZP_04921829.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262393535|ref|YP_003285389.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|151938991|gb|EDN57823.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262337129|gb|ACY50924.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 1159

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1155 (42%), Positives = 724/1155 (62%), Gaps = 36/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ +++ LL  +N GY  L  L+SKAY+         I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG  +  G   I +     + + FPD FY+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMKETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDPG--MTLDKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++   +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQIESIPLEDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  R+D K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV  + T  N    ++   +L       +P  +YY      +  +    
Sbjct: 1073 GSAREKYARGLSVSIDATQINDQFFEQFSRILEPHKAGTVPVNVYYQ-RADARARLTLGT 1131

Query: 1123 NYKVQP----IDDLK 1133
             ++V P    +DDLK
Sbjct: 1132 EWRVTPSDTLLDDLK 1146


>gi|417741669|ref|ZP_12390225.1| DNA polymerase III, &alpha subunit [Shigella flexneri 2930-71]
 gi|332768687|gb|EGJ98867.1| DNA polymerase III, &alpha subunit [Shigella flexneri 2930-71]
          Length = 1140

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1128 (42%), Positives = 717/1128 (63%), Gaps = 33/1128 (2%)

Query: 26   VIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLL 85
            +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++   + + L +
Sbjct: 7    LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTV 66

Query: 86   LVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQ 145
            L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG  +GD+G ++ 
Sbjct: 67   LAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGGRMGDVGRSLL 124

Query: 146  NGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQF 205
             G + + +     + + FPD +++E+ R  +P+    +   + +A    LP+VAT+ ++F
Sbjct: 125  RGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRF 184

Query: 206  LKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIA 265
            +  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP A+ NT+EIA
Sbjct: 185  IDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIA 244

Query: 266  KRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKK 325
            KRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E     +  Y +
Sbjct: 245  KRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDE 303

Query: 326  RLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLS 385
            RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+L ITD+DPL 
Sbjct: 304  RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 363

Query: 386  YNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIR 445
            ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TFGTMAAK  IR
Sbjct: 364  FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 423

Query: 446  DVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQV 505
            DVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV+ LI++A+++
Sbjct: 424  DVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKL 481

Query: 506  EGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTT 565
            EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL+KFDFLGL T
Sbjct: 482  EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 541

Query: 566  LSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLK 623
            L+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQLES+GMK+++K
Sbjct: 542  LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 601

Query: 624  EAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETY 675
              +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +      K VL  TY
Sbjct: 602  RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTY 661

Query: 676  GIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKA 735
            GI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA K G++   A
Sbjct: 662  GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELA 721

Query: 736  NEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILV 795
             +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  MD+T K+  LV
Sbjct: 722  MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 781

Query: 796  KDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-K 854
             +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  IEAI+  R K
Sbjct: 782  DECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGPIEAIIEARNK 835

Query: 855  FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK- 913
             G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  ALK A++  K 
Sbjct: 836  GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKA 895

Query: 914  -FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQ 972
              I Q  +F        +   +Y     W ++  L  E++ LG  L+ H    Y  EI +
Sbjct: 896  EAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER 955

Query: 973  FI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLY 1027
            ++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  +EV++     
Sbjct: 956  YVGGVRLKDMHPTEHGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDAL 1015

Query: 1028 EKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNI 1086
            +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  ++ + +R  + 
Sbjct: 1016 DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD 1075

Query: 1087 SILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
             +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1076 QLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1122


>gi|303253323|ref|ZP_07339472.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|307248125|ref|ZP_07530153.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
 gi|302648005|gb|EFL78212.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|306855302|gb|EFM87477.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
          Length = 1158

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1165 (42%), Positives = 737/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+ L ++  +++AA  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINSLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E   +   WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPLVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               +  +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  --AELNEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLALCRTGRADEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q 
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQY 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV++LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKELIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LFD T R+D K INRR    LI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAVTKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + ++V P D++   L  L   NA+
Sbjct: 1129 GIEWRVTPKDEMLDQLKALLGENAV 1153


>gi|417710817|ref|ZP_12359826.1| DNA polymerase III subunit alpha [Shigella flexneri K-272]
 gi|333011023|gb|EGK30442.1| DNA polymerase III subunit alpha [Shigella flexneri K-272]
          Length = 1140

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1128 (42%), Positives = 718/1128 (63%), Gaps = 33/1128 (2%)

Query: 26   VIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLL 85
            +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++   + + L +
Sbjct: 7    LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTV 66

Query: 86   LVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQ 145
            L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG  +GD+G ++ 
Sbjct: 67   LAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGGRMGDVGRSLL 124

Query: 146  NGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQF 205
             G + + +     + + FPD +++E+ R  +P+    +   + +A    LP+VAT+ ++F
Sbjct: 125  RGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRF 184

Query: 206  LKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIA 265
            +  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP A+ NT+EIA
Sbjct: 185  IDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIA 244

Query: 266  KRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKK 325
            KRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E     +  Y +
Sbjct: 245  KRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDE 303

Query: 326  RLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLS 385
            RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+L ITD+DPL 
Sbjct: 304  RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 363

Query: 386  YNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIR 445
            ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TFGTMAAK  IR
Sbjct: 364  FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 423

Query: 446  DVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQV 505
            DVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV+ LI++A+++
Sbjct: 424  DVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKL 481

Query: 506  EGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTT 565
            EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL+KFDFLGL T
Sbjct: 482  EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 541

Query: 566  LSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLK 623
            L+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQLES+GMK+++K
Sbjct: 542  LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 601

Query: 624  EAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETY 675
              +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +      K VL  TY
Sbjct: 602  RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTY 661

Query: 676  GIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKA 735
            GI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA K G++   A
Sbjct: 662  GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELA 721

Query: 736  NEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILV 795
             +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  MD+T K+  LV
Sbjct: 722  MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 781

Query: 796  KDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-K 854
             +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  IEAI+  R K
Sbjct: 782  DECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGPIEAIIEARNK 835

Query: 855  FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK- 913
             G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  ALK A++  K 
Sbjct: 836  GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGYALKAADQHAKA 895

Query: 914  -FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQ 972
              I Q  +F        +   +Y     W ++  L  E++ LG  L+ H    Y  EI +
Sbjct: 896  EAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER 955

Query: 973  FI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLY 1027
            ++  + L ++ PT      T +G++   ++  T RG +I I ++DD S  +EV++     
Sbjct: 956  YVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICMLDDRSGRLEVMLFTDAL 1015

Query: 1028 EKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNI 1086
            +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  ++ + +R  + 
Sbjct: 1016 DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD 1075

Query: 1087 SILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
             +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1076 QLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1122


>gi|336123515|ref|YP_004565563.1| DNA polymerase III subunit alpha [Vibrio anguillarum 775]
 gi|335341238|gb|AEH32521.1| DNA polymerase III alpha subunit [Vibrio anguillarum 775]
          Length = 1159

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1153 (42%), Positives = 726/1153 (62%), Gaps = 38/1153 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+IDGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4    PKFVHLRVHSDFSMIDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHNCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L  +N GY  L  L+S AY+         I   WL  
Sbjct: 64   PIIGADFVMQSEEFGDELTKLTVLASDNVGYKNLTLLISDAYLRGHVQHLPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             KY +GLI LSG   G+IG A+  G   + +     +   F D FY+E+ R  + +    
Sbjct: 122  VKYAEGLIVLSGGKSGEIGKALLKGNQALVDKCVEFYQTHFVDRFYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A N +LP+VAT+ + FL +  F AHE+R  I +G  + + +R K ++ +Q  +
Sbjct: 182  LHFALELAENNDLPVVATNEVVFLSEEFFEAHEIRVAIHDGYTMEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T++EM +LF DIP A+QN++EIAKRCN+ +  G+  LP FPT + +   ++L+ KS+ GL
Sbjct: 242  TEAEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPAFPT-EGMKETEYLVMKSQEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++    +  Y +RLQ E+E I  M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPDVRAQRRPEYDERLQIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPLDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E   N+E+V++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYNNDEDVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFSPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLQREGKEPVRIEAIPLEDPVSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  VLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+IK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAIFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++   L +LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECLR-MNLKVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARTAGGYFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q+ +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQFHQAEAFGQVDMFGVLTDAPEEVEHKYTQVPEWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    +  E+ ++    L +  PT    S T++G++   K+ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAHIKELAKYTSCRLKDATPTRRDQSVTLAGLVIAAKVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   E+   +L+++ +L++SG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALERYAELLEKDRILVISGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIKYEMK 1119
              AR  Y +  S+   ++    I  +   RF           +P  +YY   ++ +  + 
Sbjct: 1073 GSAREKYARGLSISVEQS---QIDSQFFERFSQILEPHRAGTIPVNVYYQRAEA-RVRLT 1128

Query: 1120 FPLNYKVQPIDDL 1132
                ++V P D L
Sbjct: 1129 LGTQWRVTPSDTL 1141


>gi|417949116|ref|ZP_12592255.1| DNA polymerase III subunit alpha [Vibrio splendidus ATCC 33789]
 gi|342808724|gb|EGU43868.1| DNA polymerase III subunit alpha [Vibrio splendidus ATCC 33789]
          Length = 1159

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1151 (42%), Positives = 730/1151 (63%), Gaps = 34/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++  A    PALA+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L +L  +N GY  L  L+SKAY+      +  I  EWL +
Sbjct: 64   PIIGADFLMQSPEFGDELTKLTVLASDNKGYNNLTLLISKAYLRGHVQHQPVIDKEWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            N   +GLI LSGA  G+IG A+  G  D+  +    +   FPD FY+E+ R  + +    
Sbjct: 124  NA--EGLIILSGAKEGEIGKALLKGNRDLVASSVEFYKTHFPDRFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + FL +  F AHE+R  I +G  + + +R K ++ +Q  +
Sbjct: 182  LHFALDLAEQQDLPVVATNEVVFLTEDLFDAHEIRVAIHDGYTMVDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFLI KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGLAIEDFLIKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RL+ E+E I  M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  ERRLAFLFPDEQVRAERRPEYDERLKVELEVINNMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFLAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTKTTN-FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +  ++  +  +   +  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEREGKDPVRIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++ DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVIGLVDECFR-MKLKLLPPDINSGLYRFN--VDDDG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILSGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+  A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLADAVKAASQYHHAESFGQSDMFGVLTDAPEEVEHKYTQVPRWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L +  PT    S T++G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ IDD S  +EV++ +   ++   +L+++++++VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTIDDRSGRMEVMLFSDALDRYAELLEKDKIVVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKK---ILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
              AR  Y +  S+  + +  N    ++   IL  ++    +P  +YY      +  +   
Sbjct: 1073 GSAREKYARGVSISIDESQINGQFFERFSQILEPYRAGT-VPVNVYYQ-RADARARLTLG 1130

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1131 TEWRVTPSDTL 1141


>gi|89075405|ref|ZP_01161822.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34]
 gi|89048821|gb|EAR54391.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34]
          Length = 1159

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1157 (41%), Positives = 733/1157 (63%), Gaps = 46/1157 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL ++  +++ A+    PALA+TD +NL G++KFY +A++ GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVKPIVKKASELGMPALAMTDFTNLCGLVKFYFAAHDAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     +   L LL  NN GY  L  L+S+AY       +  I  EWL  
Sbjct: 64   PIIGADFKVQSAEMGDELFELTLLAANNEGYKNLTLLISEAYQRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +++GLI LSG   GD+G A+  G   + ++    +   FPD++Y+E+ R  + +    
Sbjct: 122  VNHREGLIILSGGKNGDVGKALLKGNQKMVDSLVAFYQTHFPDSYYLELVRTGRVDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A   +LP+VAT+ ++ L   +F AHE+R  I +G  L +  R K ++ +Q  +
Sbjct: 182  LHFAIELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPKLYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QN++EIAKRCN+ +  G+  LP FPT  ++ I DFLI+KS+ GL
Sbjct: 242  SEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPT-GDMTIEDFLITKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ + ++ F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAARRPEYDERLDIELKVVNQIGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDKRDLVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P +PG  +TL+ A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEPG--MTLAKAFDAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +    +EEVR LI++ + +EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  + +       ++  +P++D+ ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLVEQGKDPINIAAIPMDDQKSFA 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ + AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKH  
Sbjct: 599  MLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHAR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+IK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D      L +LPP++N   Y F   ++ DG    + 
Sbjct: 779  PAEFMAAVMTADMDNTDKIISLV-DECHRMKLKLLPPDVNKGLYRFN--VDEDG---AVV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  IE I++ R K G F +LFDF  RID K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNL-----KEYLN-YVKVPSWSKKQ 945
              R  ++A++D A+K A +     +Q   F   D   +     +E  N Y  +P    K 
Sbjct: 893  PNRAAMLATLDDAIKAASQH----HQAEAFGQADMFGVLTAAPEEVENKYANIPEAPDKV 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTY 1002
             L  E++ LG  L+ H    Y +E++ +    L + + T      TV+G++   ++ TT 
Sbjct: 949  WLEGERETLGLYLTGHPINAYISELKHYTTWRLKDAQQTGRDKVATVAGLVIAARVMTTK 1008

Query: 1003 RG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
            RG +I ++ +DD S  +EV++ +   ++  ++L+++++++VSG+V  D F   +R++A +
Sbjct: 1009 RGTRIGLMTLDDRSGRMEVMLFSDALDRYVDLLEKDKIVVVSGQVSFDDFNGGLRMSARE 1068

Query: 1062 IFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIK 1115
            + DI+ AR  + +  ++         I ++   RF           +P  +YY    +++
Sbjct: 1069 VLDISEAREKHLRGLAISVTEQ---QIDEQFFARFSQVLEPHRAGTVPVNVYYQ-RSNVR 1124

Query: 1116 YEMKFPLNYKVQPIDDL 1132
             ++     +++ P D L
Sbjct: 1125 AKLTLGTEWRITPADQL 1141


>gi|415859677|ref|ZP_11533876.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
 gi|420318659|ref|ZP_14820519.1| DNA polymerase III subunit alpha [Shigella flexneri 2850-71]
 gi|313646755|gb|EFS11214.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
 gi|391255502|gb|EIQ14650.1| DNA polymerase III subunit alpha [Shigella flexneri 2850-71]
          Length = 1140

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1128 (42%), Positives = 717/1128 (63%), Gaps = 33/1128 (2%)

Query: 26   VIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLL 85
            +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++   + + L +
Sbjct: 7    LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTV 66

Query: 86   LVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQ 145
            L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG  +GD+G ++ 
Sbjct: 67   LAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGGRMGDVGRSLL 124

Query: 146  NGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQF 205
             G + + +     + + FPD +++E+ R  +P+    +   + +A    LP+VAT+ ++F
Sbjct: 125  RGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRF 184

Query: 206  LKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIA 265
            +  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP A+ NT+EIA
Sbjct: 185  IDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIA 244

Query: 266  KRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKK 325
            KRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E     +  Y +
Sbjct: 245  KRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDE 303

Query: 326  RLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLS 385
            RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+L ITD+DPL 
Sbjct: 304  RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 363

Query: 386  YNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIR 445
            ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TFGTMAAK  IR
Sbjct: 364  FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 423

Query: 446  DVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQV 505
            DVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV+ LI++A+++
Sbjct: 424  DVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKL 481

Query: 506  EGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTT 565
            EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL+KFDFLGL T
Sbjct: 482  EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 541

Query: 566  LSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLK 623
            L+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQLES+GMK+++K
Sbjct: 542  LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 601

Query: 624  EAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETY 675
              +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +      K VL  TY
Sbjct: 602  RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTY 661

Query: 676  GIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKA 735
            GI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA K G++   A
Sbjct: 662  GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELA 721

Query: 736  NEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILV 795
             +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  MD+T K+  LV
Sbjct: 722  MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 781

Query: 796  KDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-K 854
             +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  IEAI+  R K
Sbjct: 782  DECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGPIEAIIEARNK 835

Query: 855  FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK- 913
             G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  ALK A++  K 
Sbjct: 836  GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKA 895

Query: 914  -FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQ 972
              I Q  +F        +   +Y     W ++  L  E++ LG  L+ H    Y  EI +
Sbjct: 896  EAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER 955

Query: 973  FI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLY 1027
            ++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  +EV++     
Sbjct: 956  YVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDAL 1015

Query: 1028 EKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNI 1086
            +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  ++ + +R  + 
Sbjct: 1016 DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD 1075

Query: 1087 SILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
             +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1076 QLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1122


>gi|344199468|ref|YP_004783794.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrivorans SS3]
 gi|343774912|gb|AEM47468.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrivorans SS3]
          Length = 1166

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1083 (43%), Positives = 683/1083 (63%), Gaps = 40/1083 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL +HSEYS+ DG++ +  +    A    PA+AITD  NLF ++KFY +A ++GIK
Sbjct: 4    PRFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARSQGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG ++W+ +  + ++P+ L+LL  N  GY  L  LLS+AY+E   +GR +I   WLE 
Sbjct: 64   PLIGSEIWVHDATDLERPAGLILLCMNKTGYGNLSRLLSRAYLEGSRHGRPQIDAVWLEG 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                DGLIALS A  G+IG A+Q      AE+ AR ++K+FP+ FY+E+QR  +      
Sbjct: 124  AS--DGLIALSAAGQGEIGRALQRNPQQ-AESRARYYAKLFPERFYLEVQRNGEAGQEAL 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q  + +A  ++LP+VAT+   FL   +F A + R CI+ G  L + +R ++FT E    
Sbjct: 181  VQATVVLAGKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRLP 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
               EM   F D+P A  NTIEIA+RCN++L  G+  LP +P P   + +++L   ++ GL
Sbjct: 241  DPEEMRGRFADLPEACDNTIEIARRCNMELVLGQYALPDYPIPTGQSADEYLHDAAQKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+    I     L Y +RL  E+  I +M F GYFLIV+DFIQWAKNN +PVGP
Sbjct: 301  QERLQELH----IAGNATLPYHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVGP 356

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+   LLFERFLNP R+SMPDFD+DFC + RDRVIQYV D
Sbjct: 357  GRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVAD 416

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG+D V QI+TFGTM A+  +RDVGRVL L Y F D ++KL+P   G  +TL+ A++E 
Sbjct: 417  KYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPSDLG--MTLARALEES 474

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK--QEGMTG 540
             +L  R   E++VR L+++A ++EG+ R+   HAGGV+I+P  L +  PL+    EG  G
Sbjct: 475  EELRRRQTEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRMPLFTDGSEG-GG 533

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDT 598
             ++Q DKDD+E++GL+KFDFLGL TL+I+D  +  I           +N  +LPL+D  T
Sbjct: 534  NVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAVAGRVPVNIQQLPLDDTAT 593

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + LLK   T AVFQLES GM+++++  +PD FE+I+AL++L+RPGP+   ++ +F  RKH
Sbjct: 594  FALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKH 653

Query: 657  GEY---FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
            G+    F +PD     +L ETYG++VYQEQVMQ AQ+L GYSLG ADLLRRA+GKKK  E
Sbjct: 654  GKAQVTFLHPD--LAPILDETYGVIVYQEQVMQSAQVLAGYSLGSADLLRRAMGKKKPEE 711

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R  F  GA K GL   +A  IF+ +EKFA YGFNKSH+ AYAL+SY TAYLK HY 
Sbjct: 712  MAKQRAIFLEGAHKNGLVADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYP 771

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
             FFMAA L+  MD T+K+  ++ +  +  GL I PP++      F P  E DG    IR+
Sbjct: 772  QFFMAAVLTADMDHTDKVVAMLAECTR-MGLRIAPPSVQQGVLEFRP--EGDG---DIRF 825

Query: 834  GLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            GLGAIKG G++ I+AI+  R+ G F NLFD   R+D + INRR + +LI +GA D +   
Sbjct: 826  GLGAIKGLGRAAIQAILDARREGPFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVS 885

Query: 894  RYMLVASIDVALKNAE--KTKKFINQLSLFKNDDNNNLKEYLNYVKVP----SWSKKQEL 947
            R  L+AS+D  ++ A   ++ +   Q SLF        +E L     P    +WS  + L
Sbjct: 886  RASLIASVDSCIEAAAQFQSSRASQQESLFSG------QEALPVAPPPVLAEAWSLTETL 939

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRG-KI 1006
             +E++ LGF LS H       E+     + L +++   +  V+G++   +   T RG +I
Sbjct: 940  RQERETLGFYLSGHPMASLRDELAALGTVPLGDIRSGTTVLVAGLVVARRSTRTKRGDRI 999

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
              + +DD    +EV+I  + + +   + +  E ++V G+V ED +   +R+NA ++    
Sbjct: 1000 YFLTLDDGRGRLEVVIFAEAWAQAGKVGEGEEPVLVLGEVGEDSYSGGLRLNALRVLGTA 1059

Query: 1067 VAR 1069
             AR
Sbjct: 1060 RAR 1062


>gi|145638463|ref|ZP_01794073.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII]
 gi|145272792|gb|EDK12699.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII]
 gi|309751597|gb|ADO81581.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2866]
          Length = 1159

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1157 (42%), Positives = 732/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++G+I LSG   GD+G  +        E+    + + F D+FY+ + R  +P+    
Sbjct: 122  IEHREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALTRTGKPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A +  LP+VAT+ + FLK  +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDPKRPKYYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK+A T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAVKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINVGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ ALK +++  K   + Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVSSRIAITKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMAVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|261253713|ref|ZP_05946286.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891 = ATCC
            33934]
 gi|417954514|ref|ZP_12597548.1| DNA polymerase III subunit alpha [Vibrio orientalis CIP 102891 = ATCC
            33934]
 gi|260937104|gb|EEX93093.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891 = ATCC
            33934]
 gi|342815234|gb|EGU50158.1| DNA polymerase III subunit alpha [Vibrio orientalis CIP 102891 = ATCC
            33934]
          Length = 1159

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1155 (42%), Positives = 727/1155 (62%), Gaps = 36/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A++ GIK
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHSCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + +RL +L  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFLMQSAEFGDELTRLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +G+I LSG   G+IG A+  G    AE     +   FPD FY+E+ R  + +    
Sbjct: 122  TELSEGVIILSGGKSGEIGKALLKGNQKAAEECLAFYQTHFPDRFYLELTRTGRADEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   ++P+VAT+ +  L+++ F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQSDIPVVATNEVVILEESLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+ DP +    +  Y  RL+ E+E I  M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EDRLEFLFPDPAVRAERRPEYDDRLKIELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E   N+EE+++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYANDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K      ++  +PL D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVAIESIPLVDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLKVLPPDINAGLYRFN--VDEEG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS++ A+K A +    +   Q  LF        +    Y KV  W +K  L  
Sbjct: 893  PHRAALMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVEPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAYIRELGKYTSCRLKDATPTRRDQSVTVAGLVIASRVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+ +++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLENDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV  + +  N    ++   +L       +P  +YY  + + +  +    
Sbjct: 1073 GTAREKYARGLSVSIDESQINDRFFERFSQILEPHRAGSVPVHVYYQRSDA-QARLTLGT 1131

Query: 1123 NYKVQP----IDDLK 1133
             ++V P    +DDLK
Sbjct: 1132 EWRVTPSDALLDDLK 1146


>gi|148981148|ref|ZP_01816310.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3]
 gi|145960975|gb|EDK26300.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3]
          Length = 1159

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1151 (42%), Positives = 726/1151 (63%), Gaps = 34/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++  A    PALA+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L +L  +N GY  L  L+SKAY+      +  I  EWL +
Sbjct: 64   PIIGADFLMQSPEFGDELTKLTVLASDNKGYNNLTLLISKAYLRGHIQHQPVIDKEWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            N   +GLI LSGA  G+IG A+  G  D+  +    +   FPD FY+E+ R  + +    
Sbjct: 124  NA--EGLIILSGAKEGEIGKALLKGNRDLVASSVEFYKTHFPDRFYLELIRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + FL +  F AHE+R  I +G  + + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQQDLPVVATNEVVFLTEDLFDAHEIRVAIHDGYTMVDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFLI KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGLAIEDFLIKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D +     +  Y +RL+ E+E +  M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  ERRLAFLFPDEKERAERRPEYDERLKVELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFLAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKEPVRIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        KD L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDETWQHESLKDTLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++ DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVIGLVDECFR-MKLKLLPPDINSGLYRFN--VDDDG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILSGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+  A+K A +    +   Q  +F    +   +    Y +VP WS+K  L  
Sbjct: 893  PHRAAMMASLADAVKAASQYHHAESFGQSDMFGVLTDAPEEVEHKYTQVPRWSEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L +  PT    S T++G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ IDD S  +EV++ +   ++   +L+++++++VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTIDDRSGRMEVMLFSDALDRYAELLEKDKIVVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKK---ILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
              AR  Y +  S+  + +  N    ++   IL  ++    +P  +YY      +  +   
Sbjct: 1073 GSAREKYARGVSISIDESQINGQFFERFSQILEPYRAGT-VPVNVYYQ-RADARARLTLG 1130

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1131 TEWRVTPSDTL 1141


>gi|145632094|ref|ZP_01787829.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655]
 gi|144987001|gb|EDJ93531.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655]
          Length = 1159

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1157 (42%), Positives = 731/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++G+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   NLP+VAT+ + FLK  +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCNLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDPKRPKYYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVTE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TLS A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLSKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK+A T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAKYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRGKI 1006
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G  
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNS 1012

Query: 1007 L-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            L I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMAVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFNR-TFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEYQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|157962689|ref|YP_001502723.1| DNA polymerase III subunit alpha [Shewanella pealeana ATCC 700345]
 gi|157847689|gb|ABV88188.1| DNA polymerase III, alpha subunit [Shewanella pealeana ATCC 700345]
          Length = 1177

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1167 (42%), Positives = 731/1167 (62%), Gaps = 54/1167 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DGL ++  +I   A    PA+A+TD +N+ G++KFY++ +  G+K
Sbjct: 25   PRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACHGNGVK 84

Query: 63   PIIGCDVWITNEIENKKPS-----RLLLLVKNNNGYLQLCELLSKAYIE-NINYGRAEIR 116
            PIIG D W+      K P       +  L  +N GY  L  L+S AY+  NIN  +A I 
Sbjct: 85   PIIGTDFWV------KVPGFDEFCSITALAMDNTGYSNLTLLISDAYLRGNIN-DKAVID 137

Query: 117  IEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ 176
             EWL K  Y +GLI LSGA  GD+G A+     +  ++    +   FPD +Y+E+ R  +
Sbjct: 138  HEWLAK--YSEGLILLSGAKDGDVGRALLKENQNQVDSLIEFYKTHFPDRYYLELLRTGR 195

Query: 177  PNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFT 236
            P+    +   I +A   +LP+VAT+ + F K  +F AHE+R  I +G  L++ +R KK++
Sbjct: 196  PDEERYLHMAIALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLADPRRPKKYS 255

Query: 237  KEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLIS 296
             +Q FK+  EM +LF DIP AIQNT+EIAKRCN  +   +  LP FPT  ++ I DFL+ 
Sbjct: 256  DQQYFKSSDEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPNFPT-GDLTIEDFLVD 314

Query: 297  KSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
             S+ GL++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N
Sbjct: 315  VSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDN 374

Query: 357  SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
             IP+GPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD V
Sbjct: 375  DIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEV 434

Query: 417  IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
            I +V D YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK+IP +PG  +TL+
Sbjct: 435  IDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPAEPG--MTLA 492

Query: 477  NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQE 536
             A + EP L E    +E+V+ LI++ + +EG+ RN G HAGGV+IAP+K+ +F P+Y   
Sbjct: 493  KAFEVEPGLQESYDGDEDVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKITDFSPIYCDT 552

Query: 537  GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLN 594
                 ++Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +  +  K       +  + L 
Sbjct: 553  EGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKDKNGEERVRIESISLT 612

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D   + LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF 
Sbjct: 613  DPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 672

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E  +YPD        K++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+
Sbjct: 673  ERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAM 732

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F+ GAI+ G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 733  GKKKPEEMAKQRGTFEAGAIENGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 792

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTHY + FMAA +S  MD+T+KI  LV D  +  G+ +LPP++N   + F   ++ D 
Sbjct: 793  WLKTHYPAQFMAAVMSADMDNTDKIVTLV-DECERMGMPLLPPDVNKGLFRF--TVDDD- 848

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
                I YG+GA+KG G+  +++I+  R+ G F +LFDF  RID K +NRR+I  LI +GA
Sbjct: 849  --LNIVYGIGAVKGVGEGPVDSILKARENGPFIDLFDFCARIDLKKLNRRVIEKLICAGA 906

Query: 887  FDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWS 942
             D     R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W 
Sbjct: 907  LDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQ--QFVECTPWP 964

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLK 999
             K  L  E+  LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++ 
Sbjct: 965  DKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATRVM 1024

Query: 1000 TTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
             T RG K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI+ G+V  D F    R+ 
Sbjct: 1025 MTKRGSKMGLVTLDDKSARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMT 1084

Query: 1059 AEKIFDINVARILYGKKFSVMFNR----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
            A  I D+  AR  +     V           ++  K  +  +K    +P ++ Y   +S 
Sbjct: 1085 ARNIIDMGEARSHFANAVEVELQSDKVNALWLNEFKAAVEPWKA-GAVPVLINYAQPQS- 1142

Query: 1115 KYEMKFPLN--YKVQPIDDLKLALINL 1139
              + +F L   ++V P D+L LAL +L
Sbjct: 1143 --QAQFTLGDEWRVNPTDELMLALESL 1167


>gi|365540532|ref|ZP_09365707.1| DNA polymerase III subunit alpha [Vibrio ordalii ATCC 33509]
          Length = 1159

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1098 (43%), Positives = 707/1098 (64%), Gaps = 28/1098 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+IDGL ++  +++  A    PA+A+TD +NL G++KFY +A++ G+K
Sbjct: 4    PKFVHLRVHSDFSMIDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHHCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + ++L +L  +N GY  L  L+S AY+         I   WL  
Sbjct: 64   PIIGADFVMQSEEFGDELTKLTVLASDNVGYKNLTLLISDAYLRGHVQHLPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             KY +GLI LSG   G+IG A+  G   + +     +   F D FY+E+ R  + +    
Sbjct: 122  VKYAEGLIVLSGGKSGEIGKALLKGNQALVDKCVEFYQTHFVDRFYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A N +LP+VAT+ + FL +  F AHE+R  I +G  + + +R K ++ +Q  +
Sbjct: 182  LHFALELAENNDLPVVATNEVVFLSEEFFEAHEIRVAIHDGYTMEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T++EM +LF DIP A+QN++EIAKRCN+ +  G+  LP FPT + +   ++L+ KS+ GL
Sbjct: 242  TEAEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPAFPT-EGMKETEYLVMKSQEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RLQ E+E I  M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPEVRAQRRPEYDERLQIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPLDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E   N+E+V++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYNNDEDVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFSPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLQREGKEPVRIEAIPLEDPVSFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  VLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHDSLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ G+IK G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAIFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV + ++   L +LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECLR-MNLKVLPPDINAGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R   G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARTAGGYFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q+ +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQFHQAEAFGQVDMFGVLTDAPEEVEHKYTQVPEWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    +  E+ ++    L +  PT    S T++G++   K+ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAHIKELAKYTSCRLKDATPTRRDQSVTLAGLVIAAKVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   E+   +L+++ +L++SG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALERYAELLEKDRILVISGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT 1083
              AR  Y +  S+   ++
Sbjct: 1073 GSAREKYARGLSISIEQS 1090


>gi|322514110|ref|ZP_08067180.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
            ATCC 25976]
 gi|322120040|gb|EFX92016.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
            ATCC 25976]
          Length = 1158

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1165 (42%), Positives = 738/1165 (63%), Gaps = 39/1165 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL++HS++S+I+GL ++  +++ A  +   A+A+TD SN  G++KFY  A   G+KP
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKPLVKTAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI---EWL 120
            IIG D+++  E +++    L LL KNN GY  +  LLSKAY      G  E  +    WL
Sbjct: 65   IIGADIFVRPEPDSEDFFELTLLAKNNTGYHNITLLLSKAY----QQGYVEFPVVEKAWL 120

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +    +G+I LSG   GD+G A+       A+     + + FP+++Y+ + R  + +  
Sbjct: 121  AE--LNEGIIVLSGGRNGDVGKALLKENEAEADELISFYQQYFPNHYYLSLCRTGRMDEE 178

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ +  +    LP+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q+
Sbjct: 179  RYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPQQH 238

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F+++ EM  LF D+P A++NT++IA RCN+ +  G+  LP FPT  +++  DFL+ KS+ 
Sbjct: 239  FRSEQEMCTLFADLPQAVENTLQIAMRCNVTVRLGEYFLPNFPT-GDLSTEDFLVKKSRE 297

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ DPE  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPV
Sbjct: 298  GLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 357

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL+++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHV 417

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A  
Sbjct: 418  ADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPPDPG--MTLAKAFD 475

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY       
Sbjct: 476  AEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLH 535

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK +
Sbjct: 536  PVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEPVRIESIPLDDKKS 595

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            ++LL  + T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKH
Sbjct: 596  FDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKH 655

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      K +L+ TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 656  GNEEVSYPDAQYQHESLKPILAPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKK 715

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM   R+ F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK 
Sbjct: 716  PEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 775

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+KI     + I   GL+++PP++N  K+ F     S  +  +
Sbjct: 776  HYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKGE 829

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YGLGAIKG G+  +EAI+  R K G F +LF  T R+D K INRR   SLI SGAFD 
Sbjct: 830  IVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFYLTARVDLKKINRRTFESLIMSGAFDK 889

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  L
Sbjct: 890  LGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQTIL 949

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG 1004
              E+  LG  LS H    +  E+  + P+ L+EL+PT      TV+GII   ++  T RG
Sbjct: 950  EGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGSRIAITKRG 1009

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              L I  I+D S  +++ + ++  E   ++L+++ ++I +G V  D F   ++++  +I 
Sbjct: 1010 SRLGIATIEDRSGKLDMTLFSEALETYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIA 1069

Query: 1064 DINVARILYGKKFSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
             ++ AR  Y K  ++  ++       +K++  ++    +  LP   YY   +  +  ++ 
Sbjct: 1070 TLDEARSRYAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEG-RALLRS 1128

Query: 1121 PLNYKVQPIDDLKLALINLGLYNAI 1145
             + +++ P D++   L  L   NA+
Sbjct: 1129 GVEWRITPKDEMLDQLKTLLGENAV 1153


>gi|420369766|ref|ZP_14870437.1| DNA polymerase III subunit alpha [Shigella flexneri 1235-66]
 gi|391320927|gb|EIQ77704.1| DNA polymerase III subunit alpha [Shigella flexneri 1235-66]
          Length = 1127

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1118 (43%), Positives = 712/1118 (63%), Gaps = 33/1118 (2%)

Query: 36   PALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQ 95
            PALAITD +NL G++KFY + +  GIKPI+G D  +  ++   + + L +L  NN GY  
Sbjct: 4    PALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQN 63

Query: 96   LCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENF 155
            L  L+SKAY          I  +WL   +  +GLI LSG  +GD+G ++  G + + +  
Sbjct: 64   LALLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGGRMGDVGRSLLRGNSALVDEC 121

Query: 156  ARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHE 215
               + + FPD +++E+ R  +P+    +   + +A    LP+VAT+ ++F+  ++F AHE
Sbjct: 122  VAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHE 181

Query: 216  VRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFG 275
            +R  I +G  L + KR + ++ +Q  +++ EM +LF DIP A+ NT+EIAKRCN+ +  G
Sbjct: 182  IRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTMRLG 241

Query: 276  KPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETII 335
            +  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E     +  Y +RL+ E++ I 
Sbjct: 242  EYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVIN 300

Query: 336  KMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLN 395
            +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLN
Sbjct: 301  QMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN 360

Query: 396  PNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRY 455
            P R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y
Sbjct: 361  PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 420

Query: 456  SFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMH 515
             F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV+ LI++A+++EG+ RN G H
Sbjct: 421  GFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH 478

Query: 516  AGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYF 575
            AGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL+KFDFLGL TL+I++  +  
Sbjct: 479  AGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 538

Query: 576  IKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEI 633
            I K   K     L+   +PL+DK ++++L+++ T AVFQLES+GMK+++K  +PD FE++
Sbjct: 539  INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM 598

Query: 634  IALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVM 685
            IAL++L+RPGP+   ++ NF  RKHG E  +YPD +      K VL  TYGI++YQEQVM
Sbjct: 599  IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVM 658

Query: 686  QIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKF 745
            QIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA K G++   A +IF+ +EKF
Sbjct: 659  QIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKF 718

Query: 746  AGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLS 805
            AGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  MD+T K+  LV +  +  GL 
Sbjct: 719  AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLK 777

Query: 806  ILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDF 864
            ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  IEAI+  R K G+F  LFD 
Sbjct: 778  ILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 832

Query: 865  TKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK 922
              R D K +NRR++  LI SGAFD     R  L+ S+  ALK A++  K   I Q  +F 
Sbjct: 833  CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 892

Query: 923  NDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSEL 981
                   +   +Y     W ++  L  E++ LG  L+ H    Y  EI +++  + L ++
Sbjct: 893  VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 952

Query: 982  KPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKEN 1037
             PT      T +G++   ++  T RG +I I  +DD S  +EV++     +K + +L+++
Sbjct: 953  HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1012

Query: 1038 ELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNISILKKIL--L 1094
             +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  ++ + +R  +  +L ++   L
Sbjct: 1013 RILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSL 1072

Query: 1095 RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
                   +P  LYY      +  ++F   ++V P D L
Sbjct: 1073 EPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1109


>gi|415814288|ref|ZP_11505908.1| DNA polymerase III subunit alpha [Escherichia coli LT-68]
 gi|323170976|gb|EFZ56625.1| DNA polymerase III subunit alpha [Escherichia coli LT-68]
          Length = 1140

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1128 (42%), Positives = 717/1128 (63%), Gaps = 33/1128 (2%)

Query: 26   VIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLL 85
            +++ AA    PALAITD +NL G++KFY + +  GIKPI+G D  +  ++   + + L +
Sbjct: 7    LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTV 66

Query: 86   LVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQ 145
            L  NN GY  L  L+SKAY          I  +WL   +  +GLI LSG  +GD+G ++ 
Sbjct: 67   LAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGGRMGDVGRSLL 124

Query: 146  NGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQF 205
             G + + +     + + FPD +++E+ R  +P+    +   + +A    LP+VAT+ ++F
Sbjct: 125  RGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRF 184

Query: 206  LKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIA 265
            +  ++F AHE+R  I +G  L + KR + ++ +Q  +++ EM +LF DIP A+ NT+EIA
Sbjct: 185  IDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIA 244

Query: 266  KRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKK 325
            KRCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E     +  Y +
Sbjct: 245  KRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDE 303

Query: 326  RLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLS 385
            RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+L ITD+DPL 
Sbjct: 304  RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 363

Query: 386  YNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIR 445
            ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TFGTMAAK  IR
Sbjct: 364  FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 423

Query: 446  DVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQV 505
            DVGRVL   Y F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV+ LI++A+++
Sbjct: 424  DVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKL 481

Query: 506  EGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTT 565
            EG+ RN G HAGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL+KFDFLGL T
Sbjct: 482  EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 541

Query: 566  LSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLK 623
            L+I++  +  I K   K     L+   +PL+DK ++++L+++ T AVFQLES+GMK+++K
Sbjct: 542  LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 601

Query: 624  EAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETY 675
              +PD FE++IAL++L+RPGP+   ++ NF  RKHG E  +YPD +      K VL  TY
Sbjct: 602  RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 661

Query: 676  GIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKA 735
            GI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA K G++   A
Sbjct: 662  GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELA 721

Query: 736  NEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILV 795
             +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  MD+T K+  LV
Sbjct: 722  MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 781

Query: 796  KDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-K 854
             +  +  GL ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  IEAI+  R K
Sbjct: 782  DECWRM-GLKILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGPIEAIIEARNK 835

Query: 855  FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK- 913
             G+F  LFD   R D K +NRR++  LI SGAFD     R  L+ S+  ALK A++  K 
Sbjct: 836  GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKA 895

Query: 914  -FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQ 972
              I Q  +F        +   +Y     W ++  L  E++ LG  L+ H    Y  EI +
Sbjct: 896  EAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER 955

Query: 973  FI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLY 1027
            ++  + L ++ PT      T +G++   ++  T RG +I I  +DD S  +EV++     
Sbjct: 956  YVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDAL 1015

Query: 1028 EKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNI 1086
            +K + +L+++ +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  ++ + +R  + 
Sbjct: 1016 DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD 1075

Query: 1087 SILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
             +L ++   L       +P  LYY      +  ++F   ++V P D L
Sbjct: 1076 QLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1122


>gi|442608827|ref|ZP_21023569.1| DNA polymerase III alpha subunit [Pseudoalteromonas luteoviolacea B =
            ATCC 29581]
 gi|441749876|emb|CCQ09631.1| DNA polymerase III alpha subunit [Pseudoalteromonas luteoviolacea B =
            ATCC 29581]
          Length = 1163

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1176 (42%), Positives = 740/1176 (62%), Gaps = 45/1176 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL +   ++  AA+   PALAITD  NL G+++FY +++  GIK
Sbjct: 4    PKFVHLRVHSDFSMVDGLAKTKPIVNHAASQEMPALAITDQMNLCGLVRFYGASHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D+W+ +E    + SRL++L KNN GY  L  L+SKA+     + R  +  EWL +
Sbjct: 64   PIIGADIWLRSEQFPDELSRLVVLAKNNQGYKNLTLLISKAFRRGHVFHRPVVDKEWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +++GLI LSGA  GD+G A+    + + +     +   F ++FY+E+ R  +PN +  
Sbjct: 124  --FKEGLILLSGAVDGDVGKALLKNNDMLVDETIAFYQTHFENHFYLELHRTGRPNEDDY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            + + + +A+ +NLP+VAT+ + FLK+ +F AHE+R  I +G  L +TKR K+F+KEQ FK
Sbjct: 182  LHKAVALATRVNLPVVATNEVVFLKEDDFEAHEIRVAIHDGYTLDDTKRPKRFSKEQYFK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  +M++LF DIP A++NT+EIAKRCN+ ++ GK  LP +PT  ++ I DFL+  SK GL
Sbjct: 242  SAEQMVELFADIPEALENTVEIAKRCNVTVQLGKYFLPDYPT-GDLEIEDFLVKVSKDGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +      ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  EERLQFLFPNEAERHEKRKEYDERLEIELNCINQMGFPGYFLIVMEFIQWSKDNNIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVSA 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E   N++EVR+LI++ + +EG  RN G HAGGV+I+P+ + +F  +Y  E     +
Sbjct: 479  PRLPEAYDNDQEVRELIDMCRVLEGCTRNAGKHAGGVVISPTTITDFAAIYCDEEGKFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+IL    + +   N +          +  +PL D+ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTILQ---WALDMANARLAREGKKPVDIAAIPLTDQP 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LL +A T AVFQLES+GMK++++  KPD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFELLLRAETTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPRTKD-----VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  ++PD + +      +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKK
Sbjct: 656  HGREEISFPDAQYQHESLAPILEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ G+IK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++K
Sbjct: 716  KPEEMAKQRSTFEEGSIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA +S  MD+T+KI  LV D  +   L++LPP++N   Y F     +  + +
Sbjct: 776  THFPAEFMAAVMSADMDNTDKIVTLV-DECENMKLTLLPPDVNAGVYKF-----TVNEQQ 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  +EAI+  R   G F +LFDF  R+D K +NRR+I  LI +GA D
Sbjct: 830  QIVYGIGAIKGVGEGPVEAILEARDCGGVFKDLFDFCARVDLKRMNRRVIEKLIYAGALD 889

Query: 889  CFNEK-----RYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSW 941
                      R  L+AS+  A+K+AE+  K   + Q  LF        +    +V    +
Sbjct: 890  QLGPDKTQGGRATLLASLPDAMKSAEQHHKAEALGQSDLFGLLAVEPEEVANAFVIAQKF 949

Query: 942  SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKL 998
            +  Q L  EK+ LG  L+ H    Y  E++ +    L +L+PT      + +G++   + 
Sbjct: 950  TDNQWLEGEKETLGLYLTGHPINQYRKELKFYTSGKLVDLQPTPRDGQVSAAGLVISART 1009

Query: 999  KTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRI 1057
                +G +  +I +DD S  ++V +  + +E  +++L+ N++L++SG+V  D F   I +
Sbjct: 1010 LINKKGARWGLITLDDKSARLDVRLFPEQFEMYQDLLQINQILVISGQVSFDNFSGGITM 1069

Query: 1058 NAEKIFDINVARILYGKKFSVMFNRTF----NISILKKILLRFKCKNGLPFVLYYCINKS 1113
             A  +  +  AR    K   +  N T      I  LKK+L  +K     P  + Y     
Sbjct: 1070 TARDVCTLAAAREKRIKALRMTLNMTQIDANFIDSLKKVLEPYKFGT-CPIKIGYQ-RPD 1127

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIEYS 1149
               E+     + V P DDL   L  L      +E++
Sbjct: 1128 AWAELTLGTEWCVTPSDDLIRRLSQLAAQEIELEFN 1163


>gi|344029940|emb|CCB84905.1| DNA polymerase III subunit alpha [Candidatus Steffania adelgidicola
            str. Klausen-Leopoldsdorf]
          Length = 1160

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1151 (43%), Positives = 733/1151 (63%), Gaps = 33/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL +++ +++ AA+ + PALAITD SNL G+IKFY +A+  GIK
Sbjct: 4    PRFIHLHIHSDYSMIDGLTKVDALVKKAASLHMPALAITDFSNLCGLIKFYNTAHKAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D ++ +++   + + L +L  NN GY  L  L+S AY    +     I   WL  
Sbjct: 64   PIIGVDCFMHSDMLGNELADLSILAANNVGYQHLILLISNAYKRGYSAAGPVIDRNWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K+ +GLI LSGA  GD+G  +  G+    E     +   FPD +Y+E+ R  +      
Sbjct: 122  MKHNEGLILLSGARKGDVGKYLIRGKMSQVEQCLAFYELYFPDRYYLELIRTGREEEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+N NLPIVAT+ ++F   ++F AHE+R  I +G  LSN KR + ++ +Q  +
Sbjct: 182  LHAAVKLAANRNLPIVATNDVRFNNVSDFDAHEIRVAIHDGFTLSNGKRPRTYSPQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM  LF D+P A+ N++EIA+RCN+ +   +  LP+FPT + ++  D+LI  +  GL
Sbjct: 242  TEEEMCILFADLPEALANSVEIARRCNVIIRLDEYFLPQFPTGE-MSTEDYLIKCAHAGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L+      + ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EDRLTLLFPHGNTREEKRFSYDERLDTELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAYSL ITDIDPL ++LLFERFLNP R+SMPDFDIDFC E RD VI +V +
Sbjct: 361  GRGSGAGSLVAYSLKITDIDPLEFDLLFERFLNPERVSMPDFDIDFCMEKRDLVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL+  Y F D I+KLIP  PG  +TL  A+   
Sbjct: 421  TYGRNAVSQIITFGTMAAKAVIRDVGRVLEHPYGFVDRIAKLIPLDPG--MTLEKALVTV 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL      +EEV+ LI++AK++EG+IRN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLQTIYNGDEEVKTLIDMAKKLEGVIRNAGKHAGGVVIAPTKITDFTPLYCDSEGNYPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I++  +  I  ++I       ++  +P  D  +++
Sbjct: 539  TQFDKNDVECTGLVKFDFLGLRTLTIINWALDMINSQRIRQGLEPINITTIPQQDAKSFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ T A+FQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSETTAIFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD     P  + +L  TYGI++YQEQVM+IAQ+L GY+LG AD+LRRA+GKKKT 
Sbjct: 659  EAISYPDIEWQHPSLQPILEPTYGIILYQEQVMKIAQVLAGYTLGGADMLRRAMGKKKTE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G++   + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKERSVFKSGAESIGVNGKLSMKIFDLLEKFAGYGFNKSHSAAYALISYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T KI  L+ + ++  GL +LPP+IN  +Y+F+  +  +G   +I 
Sbjct: 779  PAEFMAAVMSADMDNTEKIVGLIDECLRM-GLKVLPPDINTGQYHFY--VNQNG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  ++ I+  R ++G F  LFD     D K INRR++  LI +GAFD   
Sbjct: 833  YGIGAIKGVGEKPVKIIIKARNQYGPFRKLFDLCAYADIKKINRRVLEKLIMAGAFDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+ S+  ALK A +  K   I Q  +F             Y  V  W ++  L  
Sbjct: 893  PHRAALIHSLSSALKTANQHAKTEAIGQGDMFGIITQPMETVESVYNSVLPWPEQVLLDR 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYSCTV---SGIITELKLKTTYRG- 1004
            E+  LGF L+ H    Y  EI+Q+   I L +L PT   T+    GI+   ++  T RG 
Sbjct: 953  ERDTLGFYLTGHPITQYLYEIKQYTGGIRLKDLHPTSRGTIVIAVGIVLTTRVILTKRGN 1012

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            +I I  +DD+S  ++V++  +  EK +++LK++ +LI  G+V  D F   +++ A +I D
Sbjct: 1013 RIGICTLDDHSARLDVLLFRKTLEKYQHLLKKDRILIAQGEVNIDNFNGGLKMIAHEIMD 1072

Query: 1065 INVARILYGKKFSVMF-NRTFNISILKKILLRFKCK--NGLPFVLYYCINKSIKYEMKFP 1121
            IN AR  Y     ++  ++  +   LK++ L  +      +P  LYY   K++   ++F 
Sbjct: 1073 INEAREKYAHGLGILLTDKQIDEQFLKRLRLSLELHRFGTIPVHLYYQ-RKNMHARLRFG 1131

Query: 1122 LNYKVQPIDDL 1132
              ++V+P D L
Sbjct: 1132 ETWRVKPSDSL 1142


>gi|110804236|ref|YP_687756.1| DNA polymerase III subunit alpha [Shigella flexneri 5 str. 8401]
 gi|424836703|ref|ZP_18261340.1| DNA polymerase III subunit alpha [Shigella flexneri 5a str. M90T]
 gi|110613784|gb|ABF02451.1| DNA polymerase III, alpha subunit [Shigella flexneri 5 str. 8401]
 gi|383465755|gb|EID60776.1| DNA polymerase III subunit alpha [Shigella flexneri 5a str. M90T]
          Length = 1127

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1118 (43%), Positives = 712/1118 (63%), Gaps = 33/1118 (2%)

Query: 36   PALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQ 95
            PALAITD +NL G++KFY + +  GIKPI+G D  +  ++   + + L +L  NN GY  
Sbjct: 4    PALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQN 63

Query: 96   LCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENF 155
            L  L+SKAY          I  +WL   +  +GLI LSG  +GD+G ++  G + + +  
Sbjct: 64   LALLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGGRMGDVGRSLLRGNSALVDEC 121

Query: 156  ARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHE 215
               + + FPD +++E+ R  +P+    +   + +A    LP+VAT+ ++F+  ++F AHE
Sbjct: 122  VAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHE 181

Query: 216  VRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFG 275
            +R  I +G  L + KR + ++ +Q  +++ EM +LF DIP A+ NT+EIAKRCN+ +  G
Sbjct: 182  IRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLG 241

Query: 276  KPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETII 335
            +  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E     +  Y +RL+ E++ I 
Sbjct: 242  EYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVIN 300

Query: 336  KMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLN 395
            +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLN
Sbjct: 301  QMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN 360

Query: 396  PNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRY 455
            P R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y
Sbjct: 361  PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 420

Query: 456  SFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMH 515
             F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV+ LI++A+++EG+ RN G H
Sbjct: 421  GFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH 478

Query: 516  AGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYF 575
            AGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL+KFDFLGL TL+I++  +  
Sbjct: 479  AGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 538

Query: 576  IKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEI 633
            I K   K     L+   +PL+DK ++++L+++ T AVFQLES+GMK+++K  +PD FE++
Sbjct: 539  INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM 598

Query: 634  IALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVM 685
            IAL++L+RPGP+   ++ NF  RKHG E  +YPD +      K VL  TYGI++YQEQVM
Sbjct: 599  IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVM 658

Query: 686  QIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKF 745
            QIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA K G++   A +IF+ +EKF
Sbjct: 659  QIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKF 718

Query: 746  AGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLS 805
            AGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  MD+T K+  LV +  +  GL 
Sbjct: 719  AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLK 777

Query: 806  ILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDF 864
            ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  IEAI+  R K G+F  LFD 
Sbjct: 778  ILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 832

Query: 865  TKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK 922
              R D K +NRR++  LI SGAFD     R  L+ S+  ALK A++  K   I Q  +F 
Sbjct: 833  CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 892

Query: 923  NDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSEL 981
                   +   +Y     W ++  L  E++ LG  L+ H    Y  EI +++  + L ++
Sbjct: 893  VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 952

Query: 982  KPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKEN 1037
             PT      T +G++   ++  T RG +I I  +DD S  +EV++     +K + +L+++
Sbjct: 953  HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1012

Query: 1038 ELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNISILKKIL--L 1094
             +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  ++ + +R  +  +L ++   L
Sbjct: 1013 RILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSL 1072

Query: 1095 RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
                   +P  LYY      +  ++F   ++V P D L
Sbjct: 1073 EPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1109


>gi|269966266|ref|ZP_06180355.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B]
 gi|269829181|gb|EEZ83426.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B]
          Length = 1159

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1157 (42%), Positives = 723/1157 (62%), Gaps = 40/1157 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ +++ LL  +N GY  L  L+SKAY+         I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG  +  G   I +     + + FPD FY+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMKETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDPG--MTLDKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++   +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQIESIPLEDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  R+D K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
              AR  Y +  SV       N  F      +IL   K    +P  +YY      +  +  
Sbjct: 1073 GSAREKYARGLSVSIDANQINDQF-FEQFSRILEPHKAGT-VPVNVYYQ-RADARARLTL 1129

Query: 1121 PLNYKVQP----IDDLK 1133
               ++V P    +DDLK
Sbjct: 1130 GTEWRVTPSDTLLDDLK 1146


>gi|441506187|ref|ZP_20988163.1| DNA polymerase III alpha subunit [Photobacterium sp. AK15]
 gi|441426135|gb|ELR63621.1| DNA polymerase III alpha subunit [Photobacterium sp. AK15]
          Length = 1159

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1150 (41%), Positives = 727/1150 (63%), Gaps = 32/1150 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PRFIHLRVHSDFSMVDGLSKVPPLVKKVAGMGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E   ++   L +L  +N+GY  L  L+S+AY          I  EWL  
Sbjct: 64   PIIGADFKVQSEEMGEELFDLTILAADNDGYKNLTLLISEAYQRGHVQHMPVIDKEWLVN 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K   GLI LSG   GD+G A+  G   +  +    +   FPD++Y+E+ R  + +    
Sbjct: 124  HK--QGLILLSGGKSGDVGKALLKGNQGMVNSCVEFYKTHFPDSYYLELVRTGRADEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A    LP+VAT+ + FL   +F AHE+R  I +G  L++  R K ++ +Q  +
Sbjct: 182  LHFAIELAEQAELPVVATNDVCFLTPDQFDAHEIRVAIHDGYTLADPNRPKLYSDQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT  +++  DFL+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-GDLSTEDFLVVKSQEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  ERRLAFLFPDEEERKQRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P +PG  +TL+ A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEPG--MTLAKAFDAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +   ++EEV+ LI++ + +EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQQTYDSDEEVKDLIDMCRVLEGVTRNAGKHAGGVVISPTTITDFSPLYCDAEGHHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K     +N   +P+ D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGMINPRLEKEGKDPVNIAAIPMADTKSFA 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ + AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GAIK G+    A  IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRAIFEDGAIKNGVDGELAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D      L +LPP++N   Y F   ++  G    I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIVGLV-DECHRMKLKLLPPDVNKGLYRFN--VDDKG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  IE I+  R K G F +LFDF  RID K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIENIIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+D A++ A +    +   Q  +F        +    Y  +P W +K  L  
Sbjct: 893  PNRAAMMASLDDAIRAASQHHQAEAFGQTDMFGVLTAAPEEVEHAYANIPEWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H   +Y +E++ +    L +  PT      TV+G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINVYVSELKHYTTWRLKDAHPTGRDKVVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++  ++++++ +L+VSG+V  D F   ++++A ++ DI
Sbjct: 1013 IGLLTLDDRSGRMEVMLYSDALDRYLDLIEKDRILVVSGQVSFDDFNGGLKMSAREVLDI 1072

Query: 1066 NVARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  + +  ++ +  R  +    ++   +L       +P  +YY    + + ++    
Sbjct: 1073 SDAREKHLRGLAISLTERQIDEQFFERFSKVLEPHRAGTVPVNVYYQ-RSNARAKLTLGT 1131

Query: 1123 NYKVQPIDDL 1132
             ++V P D L
Sbjct: 1132 EWRVTPADQL 1141


>gi|167624880|ref|YP_001675174.1| DNA polymerase III subunit alpha [Shewanella halifaxensis HAW-EB4]
 gi|167354902|gb|ABZ77515.1| DNA polymerase III, alpha subunit [Shewanella halifaxensis HAW-EB4]
          Length = 1177

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1169 (42%), Positives = 730/1169 (62%), Gaps = 58/1169 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DGL ++  +I   A    PA+A+TD +N+ G++KFY++ +  G+K
Sbjct: 25   PRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACHGNGVK 84

Query: 63   PIIGCDVWITNEIENKKPS-----RLLLLVKNNNGYLQLCELLSKAYIE-NINYGRAEIR 116
            PIIG D W+      K P       +  L  +N GY  L  L+S AY+  NIN  +A I 
Sbjct: 85   PIIGTDFWV------KVPGFDEFCSITALAMDNKGYSNLTLLISDAYLRGNIN-DKAVID 137

Query: 117  IEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ 176
             EWL   KY +GLI LSGA  GD+G A+     +  ++    +   FPD +Y+E+ R  +
Sbjct: 138  QEWL--VKYNEGLIILSGAKDGDVGRALLKENQNQVDSLIDFYKSNFPDRYYLELLRTGR 195

Query: 177  PNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFT 236
            P+    +   + +A   +LP+VAT+ + F K  +F AHE+R  I +G  L++ +R KK++
Sbjct: 196  PDEERYLHMAVALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLADPRRPKKYS 255

Query: 237  KEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLIS 296
             +Q FK+  EM +LF DIP AIQNT+EIAKRCN  +   +  LP FPT  ++ I DFL+ 
Sbjct: 256  DQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPNFPT-GDLTIEDFLVD 314

Query: 297  KSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
             S+ GL++RL  L+ DPE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N
Sbjct: 315  VSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDN 374

Query: 357  SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
             IP+GPGRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD V
Sbjct: 375  DIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEV 434

Query: 417  IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
            I +V + YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISK+IP +PG  +TL+
Sbjct: 435  IDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPAEPG--MTLA 492

Query: 477  NAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQE 536
             A + EP L E    +EEV+ LI++ + +EG+ RN G HAGGV+IAP+K+ +F P+Y   
Sbjct: 493  KAFEVEPGLQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKITDFSPIYCDT 552

Query: 537  GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLN 594
                 ++Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +  +  K       +  + L 
Sbjct: 553  EGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKEKNGEEPVRIESISLT 612

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
            D   + LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF 
Sbjct: 613  DPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 672

Query: 653  RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
             RKHG E  +YPD        +++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+
Sbjct: 673  ERKHGREEVSYPDAEYQHESLQELLSPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAM 732

Query: 707  GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
            GKKK  EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T 
Sbjct: 733  GKKKPEEMAKQRGTFEEGAIANGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 792

Query: 767  YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
            +LKTHY + FMAA +S  MD+T+KI  LV D  +  G+ ++PP++N   + F   ++ D 
Sbjct: 793  WLKTHYPAQFMAAVMSADMDNTDKIVTLV-DECERMGMPLIPPDVNKGLFRF--TVDED- 848

Query: 827  KHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGA 886
                I YG+GA+KG G+  +++I+  R+ G F +LFDF  RID K +NRR+I  LI +GA
Sbjct: 849  --LNIVYGIGAVKGVGEGPVDSILKARENGPFKDLFDFCARIDLKKLNRRVIEKLICAGA 906

Query: 887  FDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWS 942
             D     R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W 
Sbjct: 907  LDNLGPHRAAMIATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQ--RFVECTPWP 964

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLK 999
             K  L  E+  LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++ 
Sbjct: 965  DKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTMKAAGLVVATRVM 1024

Query: 1000 TTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
             T RG K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI+ G+V  D F    R+ 
Sbjct: 1025 MTKRGAKMGLVTLDDKSARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMT 1084

Query: 1059 AEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINK 1112
            A  I D+  AR  +     +         +  + L  FK          +P V+ Y   +
Sbjct: 1085 ARNIIDMGEARSHFANAVEIDLQAD---KVNDEWLTEFKVAVEPWKAGAVPVVINYAQPQ 1141

Query: 1113 SIKYEMKFPL--NYKVQPIDDLKLALINL 1139
            S   + +F L  N++V P D+L LAL +L
Sbjct: 1142 S---QAQFTLGDNWRVNPTDELMLALESL 1167


>gi|380513331|ref|ZP_09856738.1| DNA polymerase III subunit alpha [Xanthomonas sacchari NCPPB 4393]
          Length = 1195

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1136 (42%), Positives = 692/1136 (60%), Gaps = 80/1136 (7%)

Query: 4    QFIHLRLHSEYSIIDGLLRIND--------------VIEAAANDYQPALAITDLSNLFGI 49
            +F HL +H+E+S+ D  +R+ +              ++  A     PALA+TDL+NLF +
Sbjct: 5    RFAHLHIHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFAL 64

Query: 50   IKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIE-NI 108
            +KFYK+A   GIKPI G D+ I +    + P RL +L +N +GYL L  LL++A++E + 
Sbjct: 65   VKFYKAAEGVGIKPIAGADLLIADG--TQAPWRLTVLCRNRDGYLSLSRLLTRAWLEGHR 122

Query: 109  NYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
            + G   +R EWL+     D L AL+G      G     GR+D+AE     W +IF D  +
Sbjct: 123  SEGGVALRPEWLQTGS--DNLFALAGRE-SLAGRLASEGRHDLAEQQLADWQRIFGDGLH 179

Query: 169  IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
            +E+ R  +       Q  ++ A    LP++A++ ++FL  ++F AHE R CI+ G +L +
Sbjct: 180  LELTRTGRDGEEAFNQFALHAAGTRGLPVIASNDVRFLYASDFAAHEARVCISSGRVLDD 239

Query: 229  TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNI 288
             KR + ++ +Q  K+  EM  LF DIP AI NT+ +A+RCN++++ G   LP +P P + 
Sbjct: 240  PKRPRDYSDQQYLKSAEEMAALFADIPDAIDNTLALAQRCNIEMQLGTYFLPAYPVPDDE 299

Query: 289  NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSD 348
             ++ ++ S+S+ GL  RL    K+P      +  Y  RL+FE++TIIKM F GYFLIV+D
Sbjct: 300  TLDSWIRSQSRDGLAARL---EKNPLAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVAD 356

Query: 349  FIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDF 408
            FIQW KN  IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDF
Sbjct: 357  FIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDF 416

Query: 409  CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468
            C + RD VI YV  +YG+D VSQI+T+GTMAAK  +RD GRVL   Y   D ++KLIP  
Sbjct: 417  CMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGLVDGVAKLIPNI 476

Query: 469  PGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
             G  ITL +A+ E        P+L +R + E++VR L++LA+Q+E + RN G HAGGV+I
Sbjct: 477  LG--ITLKDAMGEGKDSEMASPELIQRYQAEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 534

Query: 522  APSKLINFCPLYKQEGMTGI----ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK 577
            AP+ L +FCPL+ +  +       ++Q+DKDD+E++GL+KFDFLGL TL+I+D   + +K
Sbjct: 535  APTPLSDFCPLFAEHDVDNFGKNPVTQFDKDDVEQVGLVKFDFLGLRTLTIID---WAVK 591

Query: 578  KINTKTTN-----FSLNKLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
             IN +          +  +PL+D  TY  +    NT AVFQ ES GM+ +LK+A+PD FE
Sbjct: 592  AINVRHARAGIPPVEIAAIPLDDAPTYKGIFASGNTGAVFQFESSGMRRLLKDARPDRFE 651

Query: 632  EIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
            ++IAL+SLYRPGPMDLI +F  RKHG E   YPDPRT+ +L +TYGIMVYQEQVMQ+AQI
Sbjct: 652  DLIALVSLYRPGPMDLIPSFNARKHGQEEIVYPDPRTEAILKDTYGIMVYQEQVMQMAQI 711

Query: 691  LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
            +GGYSLG ADLLRRA+GKK  +EM +HR+ F+ GA K G+ + KA+EIF+ +EKFAGYGF
Sbjct: 712  VGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFDLMEKFAGYGF 771

Query: 751  NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
            NKSHA AYAL+SY TA+LK HY + FMAA LS  MD+T+K+ +   D ++  GL++LPP 
Sbjct: 772  NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKV-VGFLDEVRNLGLTVLPPR 830

Query: 811  INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRID 869
            IN S Y F            I+YGLGAIKG G+   EAIV ER + G + +L DF  R++
Sbjct: 831  INASAYMF-----EAATPDTIQYGLGAIKGVGRGACEAIVAERERGGEYASLLDFCTRVE 885

Query: 870  KKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNN 927
               +N+R + ++IN+GA D     R  L+  +   +K  E+   ++   Q SLF   D +
Sbjct: 886  SAKLNKRTLEAMINAGAMDGLGANRATLMLQLPEVMKATEQMARERASGQNSLFGGADTS 945

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------ 981
                 L+  +   W   Q L  E++ LGF LS H F  Y  E+R+ +   LS L      
Sbjct: 946  APALRLDLPESKEWPLGQLLAGERETLGFYLSGHPFDPYRDEVRELVGCDLSALEKICAQ 1005

Query: 982  ----------------KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQ 1025
                            +P  S  ++G +  ++ K   +   + + ++D    +E    + 
Sbjct: 1006 SGGGRGGGGDGEKRAWRPEVSAILAGQVVGVRRKGDSQ---VFVQLEDGRGRIECSAFSD 1062

Query: 1026 LYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN 1081
               +  ++L  + +LIV G V ED F     +   + +D       + ++ S+  +
Sbjct: 1063 AIAEFGHLLTRDRILIVKGGVREDEFNGGYAMRIRQCWDYEQICTHHAQRLSLRLD 1118


>gi|419838699|ref|ZP_14362119.1| DNA polymerase III, alpha subunit [Haemophilus haemolyticus HK386]
 gi|386909927|gb|EIJ74589.1| DNA polymerase III, alpha subunit [Haemophilus haemolyticus HK386]
          Length = 1159

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1157 (41%), Positives = 733/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSALCGDEYFDLTLLAKNNEGYKNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++G+I LSG   GD+G  +        E+    + + F ++FY+ + R  +PN    
Sbjct: 122  IEHREGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFANHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   NLP+VAT+ + FL   +F AHE+R  I +G  L + KR K++T +Q F+
Sbjct: 182  IQAALKLAERCNLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKRYTPQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ K+K GL
Sbjct: 242  SEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQAAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMVREGKPQVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      + +    Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEEVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSV-MFNRTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++ + +     S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSDHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|261855201|ref|YP_003262484.1| DNA polymerase III subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261835670|gb|ACX95437.1| DNA polymerase III, alpha subunit [Halothiobacillus neapolitanus c2]
          Length = 1168

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1164 (41%), Positives = 705/1164 (60%), Gaps = 55/1164 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL LH+E+S+IDG LRI  ++ AA     PALA+TD +NLF ++KFY++A   GIKPI
Sbjct: 3    FVHLHLHTEFSLIDGTLRIKPMLAAAKERGLPALALTDQANLFAMVKFYEAARKSGIKPI 62

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G D  + +E     P R++LL +NN G+  L ELLS+ Y E     R  +R EWL + +
Sbjct: 63   LGADCLVVDE-PGSTPYRVVLLAQNNLGFRHLTELLSRGYCEGQIQDRPMLRREWLTQEQ 121

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQ 184
               GLIALSG HLG+IG  + +G+    +   + W++ FPD FY+E+ R  +P+    + 
Sbjct: 122  CA-GLIALSGGHLGEIGQLLLHGKARERKAAIKFWTERFPDRFYLELTRCGRPDEEKYLH 180

Query: 185  QFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQ 244
              + +A    LP+VAT+ ++FL +  F AHEVR CI +G +L + +R   +T  Q  +  
Sbjct: 181  AAVELAEQAQLPVVATNDVRFLDQENFEAHEVRVCIQQGRVLDDPRRPHDYTALQYLRPA 240

Query: 245  SEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKK 304
             EM  LF DIP AI+N++ +A+RCN+ L+ GK  LP FPTP      D+L + S+ GL  
Sbjct: 241  DEMQALFADIPEAIENSLAVAERCNVTLQLGKNFLPNFPTPNGETEADYLRTLSEQGLAH 300

Query: 305  RLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGR 364
            R   +  +      +   Y++RL  E++ II+M FSGYFLIV+DFIQWAK   IPVGPGR
Sbjct: 301  RFERVPAE------QHEAYRERLNIELDVIIQMGFSGYFLIVADFIQWAKRQGIPVGPGR 354

Query: 365  GSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRY 424
            GSGA SLVA++L ITDIDP+ Y+LLFERFLNP R+SMPDFDIDFC EGRDRVI YV +RY
Sbjct: 355  GSGAGSLVAWALLITDIDPIPYDLLFERFLNPERVSMPDFDIDFCMEGRDRVIDYVAERY 414

Query: 425  GKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI----- 479
            G+ AVSQI T GTMAAK  +RDVGRV+   Y F D I+KLIP KPG  +TL +A+     
Sbjct: 415  GRAAVSQIATHGTMAAKAVVRDVGRVMSYPYGFVDRIAKLIPMKPGLDVTLEDALGRTER 474

Query: 480  --KEEPQLAERIKN----EEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY 533
              KE+ + ++  ++    +EEVR ++++   +EG+ RNVG HAGGV+IAPSKL +F P+Y
Sbjct: 475  SQKEQERFSQEFRDLYERDEEVRAIVDMGMALEGLSRNVGKHAGGVVIAPSKLTDFTPMY 534

Query: 534  KQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKL 591
             +       SQ DKDD+E +GL+KFDFLGL  L+I+D  +  I     K       +  +
Sbjct: 535  CESNGASAASQLDKDDVEAVGLVKFDFLGLRNLTIIDWALGSINATRQKVGKEPVDITVI 594

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIK 649
            PL+DK ++NLLK+  T AVFQLES+GMK++++  +PD FE+IIAL++L+RPGP+   ++ 
Sbjct: 595  PLDDKPSFNLLKRCETTAVFQLESRGMKDLIRRLQPDTFEDIIALVALFRPGPLQSGMVD 654

Query: 650  NFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            +F  RK GE    Y  P   DVL  TYG++VYQEQVMQIAQIL GY+LG ADLLRRA+GK
Sbjct: 655  DFILRKKGEQKIEYLHPWLTDVLKPTYGVIVYQEQVMQIAQILAGYTLGGADLLRRAMGK 714

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R+ F  GA    +   +A  IF+ +EKFAGYGFNKSH+ AYAL++Y TA+L
Sbjct: 715  KKPEEMAKQREIFLEGAKSKQVDPTQAGYIFDLMEKFAGYGFNKSHSAAYALVAYQTAWL 774

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            K HY + FMAA LS  MD+T+KI  L+ +  +  GL+++PP++N   Y F  + E     
Sbjct: 775  KAHYPAHFMAAVLSADMDNTDKIVGLIGEC-QRMGLNVIPPDVNHCAYKFQALDE----- 828

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAF 887
              + YGLGAIKG G+  I+ IV ER+ G  F ++ DF  R+  + +N+R++ +++ +GA 
Sbjct: 829  HTVVYGLGAIKGVGEGVIQKIVEERQAGAPFVDMNDFCHRVGSQALNKRVLEAMVLAGAL 888

Query: 888  DCFNEKRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQ 945
            D     R  L A I  A+K A + +  +      LF   D       +    +  W   +
Sbjct: 889  DTLGPNRASLFAHIPDAMKAASQIQAAEAAGMGDLFGGFDAPETAIRVPIPALEPWPDAE 948

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------------KPTYSCTVSGI- 992
            +L +EK  LG  L+ H    +  E++  +   LS L                  TV+G+ 
Sbjct: 949  QLRKEKDTLGLYLTGHPIHAFRDELKSLVSDTLSGLLDKLDIPAPGTFPKGVPVTVAGLA 1008

Query: 993  ITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFL 1052
            I E  ++     + L + +DD     EV I     ++    ++ ++L+IV G  + D F 
Sbjct: 1009 IAERIVRQQNGDRQLFLTLDDGEGRCEVRITGDEIDRISAQVERDQLVIVEGDAVFDNFS 1068

Query: 1053 KNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLR---FKCKNGLPFV--LY 1107
              IR+  +++  +  AR+   +   + F    N +  + ++ R    +C +G+P    +Y
Sbjct: 1069 GGIRVRCKRLLVLEQARLEKARGIFLEFAADCNAAKAQALIERMRPMRC-DGVPLSCRVY 1127

Query: 1108 YCINKSIKYEMKFPLNYKVQPIDD 1131
              + K++   ++    +++ P DD
Sbjct: 1128 SDMAKAV---VRLGPEWQIAPTDD 1148


>gi|348029847|ref|YP_004872533.1| DNA polymerase III subunit alpha [Glaciecola nitratireducens FR1064]
 gi|347947190|gb|AEP30540.1| DNA polymerase III subunit alpha [Glaciecola nitratireducens FR1064]
          Length = 1139

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1140 (43%), Positives = 724/1140 (63%), Gaps = 38/1140 (3%)

Query: 18   DGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIEN 77
            DGL ++  ++    +   PA+AITDL N+ G++KFY  A+N G+KPIIGCD+W+ +    
Sbjct: 3    DGLNKVKPILAKTKSMNMPAIAITDLMNMCGLVKFYSEAFNIGVKPIIGCDIWLLSPHFP 62

Query: 78   KKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHL 137
             + +RL L+ KN  GY  + E++SKAY +     +  +R EWL +  Y +G+I LSGA  
Sbjct: 63   NEITRLTLIAKNIKGYKNITEIISKAYRQGHVQHKVVVRQEWLAE--YAEGVIVLSGALA 120

Query: 138  GDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPI 197
            GD+GIA+     DIA N    + + F ++FY+E+ R  +      I + +  A+  +LP+
Sbjct: 121  GDLGIALTKNNPDIANNITAFFQQYFHEHFYVELVRTGRDGEEDYIHRAVEWAAQNDLPV 180

Query: 198  VATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSA 257
            VAT+ + F+ +  F  HEVR CI+EG  L + +R KK +++Q  ++  EMI+LF DIPSA
Sbjct: 181  VATNEVCFIDQIGFEPHEVRVCISEGYTLDDKRRPKKHSEQQYLRSAEEMIELFKDIPSA 240

Query: 258  IQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYK 317
            I+NTIEIAKRCN +L  G+  LP+FPT  ++   DFL+  S+ GL++RL+ ++ D E  K
Sbjct: 241  IENTIEIAKRCNAELTLGEYFLPQFPT-GDMTTEDFLVKVSEEGLERRLIKIFADEEERK 299

Query: 318  CEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLS 377
             ++  Y +RL  E++ I +M F GYFLIV +FIQW+K+N+IPVGPGRGSGA SLVAY+L 
Sbjct: 300  EKRPEYDERLAIELKVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALD 359

Query: 378  ITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGT 437
            ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI +V D YG+DAVSQI+TFGT
Sbjct: 360  ITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVADIYGRDAVSQIITFGT 419

Query: 438  MAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQ 497
            MAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL  A   EP+L E  + +E+V+ 
Sbjct: 420  MAAKAVIRDVGRVLGHPYGFVDRISKLIPMDPG--MTLEKAFAVEPRLPELYEEDEDVKD 477

Query: 498  LIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIK 557
            LI+ A+ +EG+ RN G HAGGV+I+P+ + +F PLY  +  +  ++Q+DK+D+E  GL+K
Sbjct: 478  LIDTARILEGVTRNAGKHAGGVVISPTTITDFSPLYCDDTGSNPVTQFDKNDVETAGLVK 537

Query: 558  FDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQG 617
            FDFLGL TL+I+   I  +K++  +  +  + ++PL D   + +L+KA T AVFQLES+G
Sbjct: 538  FDFLGLRTLTIIQWAIDMVKEV--QGIDIDITQIPLEDPKCFRVLQKAETTAVFQLESRG 595

Query: 618  MKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKD 669
            MK+++   KPD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD        ++
Sbjct: 596  MKDLINRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDAEYQHECLQE 655

Query: 670  VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYG 729
            +L  TYGI++YQEQVMQIAQ++ GYSLG ADLLRRA+GKK   EM + R  F+ GA    
Sbjct: 656  ILEPTYGIILYQEQVMQIAQVMSGYSLGGADLLRRAMGKKNAQEMAKQRASFEQGAADNN 715

Query: 730  LSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTN 789
            +    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA +S  MD+T+
Sbjct: 716  IDPELSIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMSADMDNTD 775

Query: 790  KIKILVKDAIKTCG---LSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTI 846
            KI  LV +    CG   + ILPP++N  +Y F   + SDG   +I YG+GAIKG G+  +
Sbjct: 776  KIVTLVDE----CGHMNIDILPPDLNAGEYKF--TVNSDG---QIVYGIGAIKGVGEGPV 826

Query: 847  EAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVAL 905
            EAI+  R + G F +LFDF  ++D K +N+R++  L+ SGA D     R  L+A+I  AL
Sbjct: 827  EAIIEAREQQGKFKDLFDFCAKVDVKRVNKRVLEKLVLSGAMDNLGPHRAALMATIKDAL 886

Query: 906  KNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIF 963
              A +  K     Q  LF     +       + KVP WS+K  L  EK+ LG  L+ H  
Sbjct: 887  NAASQHAKAELAGQADLFGVQIESEEDITSAFAKVPKWSEKVWLDGEKETLGLYLTGHPI 946

Query: 964  CIYETEIRQFIPIYLSELKPT----YSCTVSGIITELKLKTTYRGKIL-IIVIDDNSNSV 1018
              Y  EI+Q+    L++L PT    +  TV G++  +++ T  +G+   I+ +DD S  +
Sbjct: 947  NQYLKEIKQYTDGRLADLTPTNRDQFISTV-GLVIGVRVMTNKKGRRWGIVTLDDKSARM 1005

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            +V     +YE+ +++L  + LL V G+V  D F     INA+ +  I  AR  Y K+  +
Sbjct: 1006 DVRFYPDMYEQFESVLVSDNLLWVKGQVSFDEFSGGNTINAKDVLTIVQARSKYVKQLKI 1065

Query: 1079 MF-NRTFNISILKKILLRFKC-KNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLAL 1136
                +   +S + K+    +  KNG   +  +  ++ ++  +     + V+P + L + L
Sbjct: 1066 SIPEKLCTLSTVAKVQGILQVYKNGTCPLHIHVEHEDVEVTIASGTQWCVEPEEQLLVEL 1125


>gi|91223488|ref|ZP_01258753.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01]
 gi|91191574|gb|EAS77838.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01]
          Length = 1159

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1157 (42%), Positives = 723/1157 (62%), Gaps = 40/1157 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ +++ LL  +N GY  L  L+SKAY+         I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG  +  G   + +     + + FPD FY+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGGKSGEIGRGLLKGNRQLVQGCVDFYKQHFPDRFYLELLRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMKETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDPG--MTLDKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++   +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQIESIPLEDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  R+D K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
              AR  Y +  SV       N  F      +IL   K    +P  +YY      +  +  
Sbjct: 1073 GSAREKYARGLSVSIDANQINDQF-FEQFSRILEPHKAGT-VPVNVYYQ-RADARARLTL 1129

Query: 1121 PLNYKVQP----IDDLK 1133
               ++V P    +DDLK
Sbjct: 1130 GTEWRVTPSDTLLDDLK 1146


>gi|451970882|ref|ZP_21924106.1| DNA polymerase III subunit alpha [Vibrio alginolyticus E0666]
 gi|451933299|gb|EMD80969.1| DNA polymerase III subunit alpha [Vibrio alginolyticus E0666]
          Length = 1159

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1157 (42%), Positives = 723/1157 (62%), Gaps = 40/1157 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++   ++ +++ LL  +N GY  L  L+SKAY+         I   WL  
Sbjct: 64   PIIGADFKMQSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG  +  G   + +     + + FPD FY+E+ R  +P+    
Sbjct: 122  AEMSEGLIVLSGGKSGEIGRGLLKGNRQMVQGCVDFYKQHFPDRFYLELLRTGRPDEETY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + FL    F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  TEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMKETEFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDPG--MTLDKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  + +EEV++LI++   +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  +PL D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQIESIPLEDPASFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLTVLPPDINSGLYRFN--VDENG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R K G F +LFDF  R+D K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS++ A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S TV+G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I I+ +DD S  +EV++ +   ++   +L+++ +L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGIMTLDDRSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
              AR  Y +  SV       N  F      +IL   K    +P  +YY      +  +  
Sbjct: 1073 GSAREKYARGLSVSIDANQINDQF-FEQFSRILEPHKAGT-VPVNVYYQ-RADARARLTL 1129

Query: 1121 PLNYKVQP----IDDLK 1133
               ++V P    +DDLK
Sbjct: 1130 GTEWRVTPSDTLLDDLK 1146


>gi|332289502|ref|YP_004420354.1| DNA polymerase III subunit alpha [Gallibacterium anatis UMN179]
 gi|330432398|gb|AEC17457.1| DNA polymerase III subunit alpha [Gallibacterium anatis UMN179]
          Length = 1177

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1155 (42%), Positives = 730/1155 (63%), Gaps = 44/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+IDGL ++  +++  A     A+A+TD +N  G++KFY +   KG+K
Sbjct: 24   PKFVHLRVHSDFSMIDGLPKVKTLVDECAKQQMVAMALTDFTNFCGLVKFYGATLGKGVK 83

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PI+G DV + +E    +P  L LL KNN GY  +  LLS+AY      G  E   I  EW
Sbjct: 84   PIVGADVLVNSEELADEPFSLTLLAKNNAGYQNITLLLSRAY----QRGYREYPMIDREW 139

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L   ++ +G+I LSG   GD+G  +  G  + AEN    + + FPD+FY+ I R  + + 
Sbjct: 140  L--IEHAEGIIILSGGKDGDVGKFLVRGNQNAAENCLAFYQRYFPDHFYLAISRTGRNDE 197

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +Q  +N+A    +P+VAT+ + FL + +F AHE+R  I +G  L +  R KK++ +Q
Sbjct: 198  EHYLQLAVNLAEQHQIPLVATNDVMFLCEEDFEAHEIRVAIHDGYTLDDPNRPKKYSPQQ 257

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM +LF D+P A++N++ IA+RCN+ +  G+  LP+FPT  +++  D+LI ++K
Sbjct: 258  YFRSEQEMCELFADLPQALENSVYIAQRCNVTIRLGQYFLPQFPT-GDLSTEDYLIQQAK 316

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D +  + ++ +Y +RL+ E++ I +M F GYFLIV +FIQW+K+N+IP
Sbjct: 317  TGLEQRLAVLFPDEQERQQKRAKYDERLETELKVINQMGFPGYFLIVMEFIQWSKDNNIP 376

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYS+ ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++
Sbjct: 377  VGPGRGSGAGSLVAYSIRITDLDPLQFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEH 436

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D I+KLIP  PG  +TL  A 
Sbjct: 437  VAQMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPPDPG--MTLQKAF 494

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
              EP+L E   ++EEV++LI++ +++EGI RN G HAGGV+I+PSK+ +F P+Y      
Sbjct: 495  DAEPKLVEAYNSDEEVKELIDMGRKLEGITRNAGKHAGGVVISPSKITDFSPIYCDSEGK 554

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
              ++ +DK D+E  GL+KFDFLGL TL+I+   +  I +   +       ++ +PL+D+ 
Sbjct: 555  HPVTHFDKSDVEYAGLVKFDFLGLRTLTIIQWAVDMINERMRREGKPEIDIHHIPLDDEK 614

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LL  A T AVFQLES+GMK++++  KPD FE+IIAL++L+RPGP+   ++ NF RRK
Sbjct: 615  SFKLLLDAQTTAVFQLESRGMKDLIRRLKPDCFEDIIALVALFRPGPLQSGMVDNFIRRK 674

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 675  HGEEEISYPDAEYQHQSLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 734

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 735  KPEEMAKQRSVFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 794

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             H+ + FMAA ++  MD   KI     ++++  GL ++PP+IN  KY F     S  +  
Sbjct: 795  AHFPAEFMAAVMTSEMDKVEKIVNFYDESLR-MGLKVVPPDINTGKYGF-----SVNEKG 848

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G++ +E I+  R   G F +LFD   R+D + INRR  ++LI +GA D
Sbjct: 849  EIVYGLGAIKGVGEAPVENIIEARTSGGLFRDLFDLCARVDLRKINRRTFDNLIKAGALD 908

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  +  +++ ALK +++  K   + Q  +F    ++  +    Y   P W++K  
Sbjct: 909  KLGPHRAAIALNLEDALKASDQHAKDEALGQTDMFGVLASSPKQVEQAYANTPKWTEKMV 968

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  +    LSE+  T    SCTVSG++   +   T R
Sbjct: 969  LDGEQETLGLYLSSHPISRYLKELSHY-SNRLSEVSVTRRGESCTVSGLVVNFRSLVTKR 1027

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G ++ I+ +DD S  +++ + +   ++ +  + ++ ++IVSG V+ D F   IR+ A +I
Sbjct: 1028 GNRLGILTLDDRSARMDITLFSDALDQFEEKIHKDHIVIVSGSVIPDDFTGGIRMIAREI 1087

Query: 1063 FDINVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYE 1117
              +   R    K  ++       N  F I   K+IL  +  +  +P  +YY   K  +  
Sbjct: 1088 NTLEEIRQRVVKSLAIAIKQEQLNNDF-IDRFKQILTPY-AQGTIPIHIYYDSPKG-RAM 1144

Query: 1118 MKFPLNYKVQPIDDL 1132
            +   + +++ P DDL
Sbjct: 1145 LTLGIEWRITPHDDL 1159


>gi|319775318|ref|YP_004137806.1| DNA polymerase III subunit alpha [Haemophilus influenzae F3047]
 gi|329122686|ref|ZP_08251264.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius
            ATCC 11116]
 gi|317449909|emb|CBY86121.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3047]
 gi|327472560|gb|EGF17990.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius
            ATCC 11116]
          Length = 1159

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1157 (42%), Positives = 729/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNQERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQFKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|330445160|ref|ZP_08308812.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
 gi|328489351|dbj|GAA03309.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
          Length = 1159

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1153 (41%), Positives = 729/1153 (63%), Gaps = 38/1153 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S+IDGL ++  +++ A++   PALAITD +NL G++KFY +A++ G+K
Sbjct: 4    PRFIHLRVHSDFSMIDGLAKVKPIVKKASDLGMPALAITDFTNLCGLVKFYFAAHDAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     +   L +L  NN GY  L  L+S+AY          I  EWL  
Sbjct: 64   PIIGADFKVQSAEMGDELFELTILAANNEGYKNLTLLISEAYQRGHVQHLPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +++GLI LSG   GD+G A+  G   + ++F   +   FPD++Y+E+ R  + +    
Sbjct: 122  INHREGLIVLSGGKNGDVGKALLKGNQKMVDSFISFYKTHFPDSYYLELVRTGRADEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ ++ L   +F AHE+R  I +G  L +  R K ++ +Q  +
Sbjct: 182  LHFAVELAEKEDLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPKLYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+QN++EIAKRCN+ +  G+  LP FPT  +++I DFL+ KSK GL
Sbjct: 242  SEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPT-GDMSIEDFLVMKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DPE+    +  Y +RL  E++ + +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  EERLEFLFPDPEVRAARRPEYDERLDVELQVVNQMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDKRDLVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P +PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +    +EEVR LI++ + +EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLGQSYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPLYCDAEGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  + I       ++  + ++D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLIEQGKEPVNIAAIAMDDPKSFA 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ + AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  MLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAIK G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719  EMAKQRAVFEEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV D      L +LPP++N   Y F   ++ +G    + 
Sbjct: 779  PAEFMAAVMTADMDNTDKIISLV-DECHRMNLKLLPPDVNKGLYRFN--VDDEG---AVV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  IE I++ R K G F +LFDF  RID K +N+R++  LI SGA D   
Sbjct: 833  YGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSGAMDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++A++D A+K A +    +   Q  +F        +    Y  +P    K  L  
Sbjct: 893  PNRAAMLATLDDAIKAASQHHQAEAFGQTDMFGVLTAAPEEVEHKYANIPESPDKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E++ +    L + + T      TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPINAYIPELKHYTTWRLKDAQQTGRDKVATVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++  ++L+++++++VSG+V  D F   +R++A ++ DI
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYIDLLEKDKIVVVSGQVSFDDFNGGLRMSAREVLDI 1072

Query: 1066 NVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIKYEMK 1119
            + AR  + +  ++         I ++   RF           +P  +YY    + + ++ 
Sbjct: 1073 SEAREKHLRGLAISVTEQ---QIDEQFFARFSQVLEPHRAGTVPVNVYYQ-RSNARAKLT 1128

Query: 1120 FPLNYKVQPIDDL 1132
                +++ P D L
Sbjct: 1129 LGTEWRITPADQL 1141


>gi|419146188|ref|ZP_13690886.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC6B]
 gi|419410813|ref|ZP_13951490.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15E]
 gi|378002624|gb|EHV65675.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC6B]
 gi|378261823|gb|EHY21614.1| DNA polymerase III, &alpha subunit [Escherichia coli DEC15E]
          Length = 1125

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1118 (43%), Positives = 712/1118 (63%), Gaps = 33/1118 (2%)

Query: 36   PALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQ 95
            PALAITD +NL G++KFY + +  GIKPI+G D  +  ++   + + L +L  NN GY  
Sbjct: 2    PALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQN 61

Query: 96   LCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENF 155
            L  L+SKAY          I  +WL   +  +GLI LSG  +GD+G ++  G + + +  
Sbjct: 62   LTLLISKAYQRGYGAAGPIIDRDWL--IELNEGLILLSGGRMGDVGRSLLRGNSALVDEC 119

Query: 156  ARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHE 215
               + + FPD +++E+ R  +P+    +   + +A    LP+VAT+ ++F+  ++F AHE
Sbjct: 120  VAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHE 179

Query: 216  VRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFG 275
            +R  I +G  L + KR + ++ +Q  +++ EM +LF DIP A+ NT+EIAKRCN+ +  G
Sbjct: 180  IRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLG 239

Query: 276  KPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETII 335
            +  LP+FPT  +++  D+L+ ++K GL++RL  L+ D E     +  Y +RL+ E++ I 
Sbjct: 240  EYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVIN 298

Query: 336  KMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLN 395
            +M F GYFLIV +FIQW+K+N +PVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLN
Sbjct: 299  QMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN 358

Query: 396  PNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRY 455
            P R+SMPDFD+DFC E RD+VI++V D YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y
Sbjct: 359  PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 418

Query: 456  SFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMH 515
             F D ISKLIP  PG  +TL+ A + EPQL E  + +EEV+ LI++A+++EG+ RN G H
Sbjct: 419  GFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH 476

Query: 516  AGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYF 575
            AGGV+IAP+K+ +F PLY  E     ++Q+DK D+E  GL+KFDFLGL TL+I++  +  
Sbjct: 477  AGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 536

Query: 576  IKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEI 633
            I K   K     L+   +PL+DK ++++L+++ T AVFQLES+GMK+++K  +PD FE++
Sbjct: 537  INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM 596

Query: 634  IALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVM 685
            IAL++L+RPGP+   ++ NF  RKHG E  +YPD +      K VL  TYGI++YQEQVM
Sbjct: 597  IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVM 656

Query: 686  QIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKF 745
            QIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F  GA K G++   A +IF+ +EKF
Sbjct: 657  QIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKF 716

Query: 746  AGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLS 805
            AGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  MD+T K+  LV +  +  GL 
Sbjct: 717  AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLK 775

Query: 806  ILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDF 864
            ILPP+IN   Y+F   +  DG   +I YG+GAIKG G+  IEAI+  R K G+F  LFD 
Sbjct: 776  ILPPDINSGLYHFH--VNDDG---EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 830

Query: 865  TKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFK 922
              R D K +NRR++  LI SGAFD     R  L+ S+  ALK A++  K   I Q  +F 
Sbjct: 831  CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 890

Query: 923  NDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSEL 981
                   +   +Y     W ++  L  E++ LG  L+ H    Y  EI +++  + L ++
Sbjct: 891  VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 950

Query: 982  KPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKEN 1037
             PT      T +G++   ++  T RG +I I  +DD S  +EV++     +K + +L+++
Sbjct: 951  HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1010

Query: 1038 ELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV-MFNRTFNISILKKIL--L 1094
             +LIVSG+V  D F   +++ A ++ DI+ AR  Y +  ++ + +R  +  +L ++   L
Sbjct: 1011 RILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSL 1070

Query: 1095 RFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
                   +P  LYY      +  ++F   ++V P D L
Sbjct: 1071 EPHRSGTIPVHLYYQ-RADARARLRFGATWRVSPSDRL 1107


>gi|406037239|ref|ZP_11044603.1| DNA polymerase III subunit alpha [Acinetobacter parvus DSM 16617 =
            CIP 108168]
          Length = 1187

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1171 (43%), Positives = 713/1171 (60%), Gaps = 53/1171 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +H+E+SI + ++RI D+++ AA +  PALAITDLSNL   IKFY +   KGIKP
Sbjct: 2    QFVHLGIHTEFSITESIVRIPDLVKVAAAEEMPALAITDLSNLHAAIKFYGACLGKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  +N G+  L E++S+ +IE        I+ EW+ + 
Sbjct: 62   IMGSVIRL-----NDAEHRATLLAMSNKGWRNLTEIVSRGFIEGQQLSTPCIQKEWILE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            + QD LI L G H  D+G  + +     AE     W + F D  Y+ + R ++      I
Sbjct: 116  QAQD-LIILLGQH-SDVGKMLCSSNPQKAEPLLEAWIEEFGDRVYLALTRTERVGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
             Q   +A+   + +VA + + F+++ +F AHE R CIA+G +LS+ KR K ++ EQ FKT
Sbjct: 174  LQAAKLAAKYQIGVVAHNDVHFIEQDDFEAHEARVCIADGYVLSDDKRPKPYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              +M +LF DIPSA++NT EIAKRCN+ L+ G   LP FP P    I+ +    S+ GL+
Sbjct: 234  AEQMSELFSDIPSALENTYEIAKRCNVSLQLGTYFLPDFPIPDGYTIDTYFEHLSRTGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL +LY   K  E +   +  Y +R+++E++ I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNHLYPVEKRGEDWAEVRQPYDERIKYEVDIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI+YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIEYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L  AI+
Sbjct: 414  AQHYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLKQAIE 472

Query: 481  EEPQLAERIKN-----EEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ ++  +   
Sbjct: 473  MEPQLKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  +  I K     T   +  + L+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSDTPLDIANVELDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
            KD Y +  +ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  KDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQ   GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA K  +++  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFIEGAAKKDINEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA LS  M +T+ I  L+ D  +   L +LPP++N+S Y+F    E     + I YGL
Sbjct: 773  FMAAVLSSEMQNTDSIVFLIDDC-RNNKLDVLPPSVNMSLYHFHASDE-----RTIVYGL 826

Query: 836  GAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++  R K G + +LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  SSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   IY  E++QF+ + L+EL PT    V+ I   L +        ++I +D
Sbjct: 944  TLGLYLTGHPIDIYRAELKQFVSVKLNELTPTRR-GVTSIFAGLVVDIANFPNRIMITLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  VE+  N++ ++++K+I+K  +++++ G++ E            K F++N  R   
Sbjct: 1003 DGTARVEISCNHERFQRHKDIIKLEQVVVIEGEIYEREGFDRPMARLSKAFNLNEIR--- 1059

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC-------INKSIKYEMKFP---- 1121
             +K +    +   I +   ++ +   K+    +L YC       I   I+ E  F     
Sbjct: 1060 -QKRA----QNIQIRLAHDLMGKSLAKDLQGMLLPYCNIDMCQHIGVKIQLEQSFASAEL 1114

Query: 1122 ---LNYKVQPIDDLKLALINLGLYNAI-IEY 1148
                 +KV P+D+L   L +    +AI IEY
Sbjct: 1115 LLGAQWKVAPLDELLAKLRDYFGKDAIYIEY 1145


>gi|240949503|ref|ZP_04753843.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305]
 gi|240296076|gb|EER46737.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305]
          Length = 1142

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1150 (43%), Positives = 728/1150 (63%), Gaps = 45/1150 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +I+GL ++  +++ A  D   A+A+TD +N  G++KFY  + + G+KPIIG D+ +  E 
Sbjct: 1    MINGLAKVKSLVKTAVADNMVAMALTDFTNFCGLVKFYGESLSSGLKPIIGADILVRPEP 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI---EWLEKNKYQDGLIAL 132
            E+++   L LL KNN GY  +  LLS AY      G  ++ +    WL   +Y +G+I L
Sbjct: 61   ESEEVYELTLLAKNNQGYHNITLLLSMAY----QQGYVDLPLVEKAWL--AEYNEGIIVL 114

Query: 133  SGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASN 192
            SG   GD+G A+       AEN    + + FP++FY  I R  + +    I   +  A+ 
Sbjct: 115  SGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSICRTGRADEERYISAVVPFANQ 174

Query: 193  INLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFY 252
              +PIVA + + FLK+ +F AHE+R  I +   L + KR+KK++ +Q F+++ EM +LF 
Sbjct: 175  KGIPIVAVNDVVFLKEDDFEAHEIRVAIHDSYTLDDPKRLKKYSPQQYFRSEEEMCRLFA 234

Query: 253  DIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKD 312
            D+PSA++NTIEIAKRC++ +  G+  LP FPT  ++    FLI KS+ GL++RL  L+ D
Sbjct: 235  DLPSALENTIEIAKRCSVTVRLGEYFLPNFPT-GDLTTEAFLIKKSEEGLEERLAFLFPD 293

Query: 313  PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLV 372
            PE    ++  Y KRL+ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLV
Sbjct: 294  PEERASKREVYDKRLKVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLV 353

Query: 373  AYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQI 432
            AY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +V + YG+DAVSQI
Sbjct: 354  AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHVAETYGRDAVSQI 413

Query: 433  VTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNE 492
            +TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL  A   EP+L E   ++
Sbjct: 414  ITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLEKAFAAEPKLTELYDSD 471

Query: 493  EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEE 552
            EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY        ++ +DK+D+E 
Sbjct: 472  EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDSEGLHPVTHFDKNDVEY 531

Query: 553  IGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDKDTYNLLKKANT 607
             GL+KFDFLGL TL+I+    + ++ IN + T        +  +PLNDK +++LL  A T
Sbjct: 532  AGLVKFDFLGLRTLTIIK---WALEMINARLTAEGKEPVRIESIPLNDKKSFDLLLAAKT 588

Query: 608  VAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPD 664
             AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKHG E  +YPD
Sbjct: 589  TAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPD 648

Query: 665  PR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
             +      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+GKKK  EM   R+
Sbjct: 649  AQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQRE 708

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GAI   +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA
Sbjct: 709  IFEKGAIDKNIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 768

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             +S  MD+T+KI  L  + I   GL+++PP+IN  K++F     S  +  +I YGLGAIK
Sbjct: 769  VMSSEMDNTDKIVGLYDECI-NMGLTVVPPDINSGKHHF-----SVNEKGEIVYGLGAIK 822

Query: 840  GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            G G+  I+AI+  R K G F +LFD T R+D K INRR  ++LI SG+ D     R  L+
Sbjct: 823  GVGEGPIDAILEARQKEGIFKDLFDLTARVDLKKINRRTFDALIMSGSLDKLGPHRAALM 882

Query: 899  ASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGF 956
             +++ ALK +++  K   + Q  +F        +    Y   P WS++  L  E+  LG 
Sbjct: 883  KNLEDALKASDQHTKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQVVLDGERATLGL 942

Query: 957  CLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVID 1012
             LS H    +  E+  + P+ L+EL+PTY     TV+GI+   ++  T RG +I I  I+
Sbjct: 943  YLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVAVTKRGSRIGIATIE 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D S  +++ + ++  E   ++  ++ ++I +G V  D F   ++++A +I  ++ AR+  
Sbjct: 1003 DRSGKLDITLFSEALEMYGDLFIKDSIIIATGSVQFDDFSGGLKMSAREIATLDEARVRN 1062

Query: 1073 GKKFSVMFNR-TFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKYEMKFPLNYKVQPI 1129
             K  ++  ++   N   +K++    +  K G LP   YY   +  +  +K  + ++V P 
Sbjct: 1063 AKSLALAIHQEQLNAKFIKELTACIEPYKAGVLPLHFYYQSEQG-RVLLKSGVEWRVTPK 1121

Query: 1130 DDLKLALINL 1139
            +++   L NL
Sbjct: 1122 EEMLTELKNL 1131


>gi|417840353|ref|ZP_12486491.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M19107]
 gi|341948621|gb|EGT75242.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M19107]
          Length = 1159

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1157 (41%), Positives = 732/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFANFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + N +   +   L LL KNN GY  +  LLSKAY    +     I   WL  
Sbjct: 65   PIIGADVKVKNALCGNEMFDLTLLAKNNEGYKNITLLLSKAYQRGYD-DYPYIDQNWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSG   GD+G  +        E+    + + F D+FY+ + R  +P+    
Sbjct: 122  IEHREGLIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFYLALTRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A +  LP+VAT+ + FLK  +F AHE+R  I +G  L + KR K++T +Q F+
Sbjct: 182  IQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIRDGYTLDDPKRPKRYTPQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ K+K GL
Sbjct: 242  SEEEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRSKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQVAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMVREGKPRVDIASIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+A+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIDALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      + +    Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEEVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFNR---TFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +    T +   L K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKLLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|373948863|ref|ZP_09608824.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183]
 gi|386325296|ref|YP_006021413.1| DNA polymerase III subunit alpha [Shewanella baltica BA175]
 gi|333819441|gb|AEG12107.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175]
 gi|373885463|gb|EHQ14355.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183]
          Length = 1157

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1158 (41%), Positives = 731/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGELCALTIIAMNNIGYQNLTQIISQAYLRGQVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GD+G A+  G +   E+    +   F D +++E+ R  +P+    
Sbjct: 122  LTYNEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ N++EIAKRCN+ +   +  LP FPT  +++I DFL+  S+ GL
Sbjct: 242  SEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSRKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +PE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  + K+  K       +  + L D   + 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIRIEAISLTDPACFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+K  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      +++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  GL ++PP++N   + F   ++ D    +I 
Sbjct: 779  PAQFMAAVMSADMDNTDKIVTLV-DECERMGLPLIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDNLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +E+++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEIMLFTEAFEKFNHLLEKDRILICEGEVSYDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  + K   + M       S L          +NG +P V+ Y   ++ K + +  
Sbjct: 1071 ISEARSHFAKALEIDMDGSELTPSALDTFEQALSPWRNGAVPVVINYTQAQA-KGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P DDL L+L +L
Sbjct: 1130 DAWRVNPTDDLMLSLESL 1147


>gi|323495347|ref|ZP_08100425.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546]
 gi|323310418|gb|EGA63604.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546]
          Length = 1159

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1155 (42%), Positives = 727/1155 (62%), Gaps = 36/1155 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L +L  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFLMQSAEFGDELTKLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +G+I LSG   G+IG A+  G + +  +    +   FPD FY+E+ R  + +    
Sbjct: 122  VELSEGVILLSGGKSGEIGKALLKGNHKVVSDCVEFYQTHFPDRFYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ +  L ++ F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQAELPVVATNDVVILDESLFDAHEIRVAIHDGYTLEDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + +   +FL+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETEFLVMKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ DP++ +  +  Y +RL+ E+E I  M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDPKVREERRPEYDERLKVELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPG--MTLEKAFKAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E  +N+EE+++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  +         ++  +PL+D  ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVAIESIPLDDLASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++  G    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVVGLVDECFR-MKLKVLPPDINAGLYRFN--VDETG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+  A+K A +    +   Q  LF        +    Y KV  W +K  L  
Sbjct: 893  PHRAAMMASLADAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVEPWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E+  LG  L+ H    Y  E+ ++    L +  PT    S T++G++   ++ TT RG +
Sbjct: 953  ERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTIAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV  + +  N    ++   +L       +P  +YY  + + +  +    
Sbjct: 1073 GTAREKYARGLSVSIDESQINDRFFERFSQILEPHRAGSVPVHVYYQRSDA-RARLTLGT 1131

Query: 1123 NYKVQP----IDDLK 1133
             ++V P    +DDLK
Sbjct: 1132 EWRVTPSDALLDDLK 1146


>gi|152999992|ref|YP_001365673.1| DNA polymerase III subunit alpha [Shewanella baltica OS185]
 gi|151364610|gb|ABS07610.1| DNA polymerase III, alpha subunit [Shewanella baltica OS185]
          Length = 1157

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1158 (41%), Positives = 730/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GD+G A+  G +   E+    +   F D +++E+ R  +P+    
Sbjct: 122  LTYNEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A +  +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ N++EIAKRCN+ +   +  LP FPT  +++I DFL+  S+ GL
Sbjct: 242  SEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSRKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +PE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLGFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  + K+  K       +  + L D   + 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIRIEAISLTDPACFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+K  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      +++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  GL ++PP++N   + F   ++ D    +I 
Sbjct: 779  PAQFMAAVMSADMDNTDKIVTLV-DECERMGLPLIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDNLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +E+++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEIMLFTEAFEKFNHLLEKDRILICEGEVSYDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  + K   + M       S L          +NG +P V+ Y      K + +  
Sbjct: 1071 ISEARSHFAKALEIDMDGSELTPSALDTFEQALSPWRNGAVPVVINYT-QALAKGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P DDL L+L +L
Sbjct: 1130 DAWRVNPTDDLMLSLESL 1147


>gi|160874613|ref|YP_001553929.1| DNA polymerase III subunit alpha [Shewanella baltica OS195]
 gi|378707865|ref|YP_005272759.1| DNA polymerase III subunit alpha [Shewanella baltica OS678]
 gi|418023487|ref|ZP_12662472.1| DNA polymerase III, alpha subunit [Shewanella baltica OS625]
 gi|160860135|gb|ABX48669.1| DNA polymerase III, alpha subunit [Shewanella baltica OS195]
 gi|315266854|gb|ADT93707.1| DNA polymerase III, alpha subunit [Shewanella baltica OS678]
 gi|353537370|gb|EHC06927.1| DNA polymerase III, alpha subunit [Shewanella baltica OS625]
          Length = 1157

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1158 (41%), Positives = 731/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GD+G A+  G +   E+    +   F D +++E+ R  +P+    
Sbjct: 122  LTYNEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ N++EIAKRCN+ +   +  LP FPT  +++I DFL+  S+ GL
Sbjct: 242  SEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSRKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +PE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  + K+  K       +  + L D   + 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGREPIRIEAISLTDPACFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+K  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      +++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  GL ++PP++N   + F   ++ D    +I 
Sbjct: 779  PAQFMAAVMSADMDNTDKIVTLV-DECERMGLPLIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDNLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +E+++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEIMLFTEAFEKFNHLLEKDRILICEGEVSYDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  + K   + M       S L          +NG +P V+ Y   ++ K + +  
Sbjct: 1071 ISEARSHFAKALEIDMDGSELTPSALDTFEQALSPWRNGAVPVVINYTQAQA-KGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P DDL L+L +L
Sbjct: 1130 DAWRVNPTDDLMLSLESL 1147


>gi|126173703|ref|YP_001049852.1| DNA polymerase III subunit alpha [Shewanella baltica OS155]
 gi|386340461|ref|YP_006036827.1| DNA polymerase III subunit alpha [Shewanella baltica OS117]
 gi|125996908|gb|ABN60983.1| DNA polymerase III, alpha subunit [Shewanella baltica OS155]
 gi|334862862|gb|AEH13333.1| DNA polymerase III, alpha subunit [Shewanella baltica OS117]
          Length = 1157

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1158 (41%), Positives = 731/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  G+K
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GD+G A+  G +   E+    +   F D +++E+ R  +P+    
Sbjct: 122  LTYNEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ N++EIAKRCN+ +   +  LP FPT  +++I DFL+  S+ GL
Sbjct: 242  SEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSRKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +PE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  + K+  K       +  + L D   + 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIRIEAISLTDPACFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+K  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      +++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKHE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  GL ++PP++N   + F   ++ D    +I 
Sbjct: 779  PAQFMAAVMSADMDNTDKIVTLV-DECERMGLPLIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDNLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +E+++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEIMLFTEAFEKFNHLLEKDHILICEGEVSYDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  + K   + M       S L          +NG +P V+ Y   ++ K + +  
Sbjct: 1071 ISEARSHFAKALEIDMDGSELTPSALDTFEQALSPWRNGAVPVVINYTQAQA-KGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P DDL L+L +L
Sbjct: 1130 DAWRVNPTDDLMLSLESL 1147


>gi|145630481|ref|ZP_01786261.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|144983871|gb|EDJ91313.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
          Length = 1159

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1157 (42%), Positives = 728/1157 (62%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G++ FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFETE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQFKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|417843867|ref|ZP_12489932.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M21127]
 gi|341948330|gb|EGT74960.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M21127]
          Length = 1159

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1157 (41%), Positives = 732/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + N +   +   L LL KNN GY  +  LLSKAY    +     I   WL  
Sbjct: 65   PIIGADVKVKNALCGNEMFDLTLLAKNNEGYKNITLLLSKAYQRGYD-DYPYIDQNWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++GLI LSG   GD+G  +        E+    + + F D+FY+ + R  +P+    
Sbjct: 122  IEHREGLIILSGGTQGDVGKKLLKENAAEIESAVAFYKEFFADHFYLALTRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A +  LP+VAT+ + FLK  +F AHE+R  I +G  L + KR K++T +Q F+
Sbjct: 182  IQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIRDGYTLDDLKRPKRYTPQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ K+K GL
Sbjct: 242  SEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLSFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+A+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIDALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      + +    Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEEVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|299770508|ref|YP_003732534.1| DNA polymerase III DnaE [Acinetobacter oleivorans DR1]
 gi|298700596|gb|ADI91161.1| DNA polymerase III DnaE [Acinetobacter oleivorans DR1]
          Length = 1187

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1167 (42%), Positives = 707/1167 (60%), Gaps = 45/1167 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D++ AA  D  PALA+TDLSNL   +KFY +   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNACLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            ++G  + +     +    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   LLGSTIRL-----DDAQHRATLLAMSDVGWKSLTEIVSRGFIEGQQLSIPCVKKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     A      W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ+FKT
Sbjct: 174  QEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRIYSPEQHFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT  IAKRCN+KL+ G   LP +P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTIDTYFEHLSKVGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI 
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAID 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EG+ RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K        ++  +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDQLNILHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  AKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA ++  M +T+ +  L+ D  +   L +LPP++N+S Y+F          K I YGL
Sbjct: 773  FMAAVMTSEMQNTDSVVFLIDDC-RNNNLEVLPPSVNMSTYHFHA-----SNDKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+FG +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  ASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP+ L+E+  T    V+ +   L +        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPVKLNEITATRR-GVTTVYAGLVIDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIVQVERVVVFEGEIYEREGFDRPMGRLTKAFTLNEIRQKR 1062

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFV---------LYYCINKS-IKYEMKFPL 1122
                 +     F    L K L        LPF          L   I++S  + E++F  
Sbjct: 1063 ANSIQIKLTEEFMQPTLAKDLQNMI----LPFCNVDMHQHISLQLQIDQSYAQAELQFGP 1118

Query: 1123 NYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             +KV P+D+L   L +  G  N  IEY
Sbjct: 1119 QWKVAPLDELLAKLRDYFGKDNIYIEY 1145


>gi|229845787|ref|ZP_04465899.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1]
 gi|229810791|gb|EEP46508.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1]
          Length = 1159

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1157 (42%), Positives = 731/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSTLCGDEYFDLTLLAKNNEGYKNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++G+I LSG   GDIG  +        E+    + + F D+FY+ + R  +P+    
Sbjct: 122  IEHREGVIILSGGTQGDIGKKLLKENVAEIESAVAFYQEFFADHFYLALTRTGKPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A +  LP+VAT+ + FLK  +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDPKRPKYYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVRKGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R K G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNKGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   I Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMAVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|226953025|ref|ZP_03823489.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244]
 gi|226836232|gb|EEH68615.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244]
          Length = 1187

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1168 (43%), Positives = 713/1168 (61%), Gaps = 47/1168 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +H+E+SI + ++RI D+++AA ND  PALA+TDLSNL   +KFY++   KGIKP
Sbjct: 2    QFVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW-LEK 122
            I+G  + +     N    R  LL  +N G+  L E++S+ +IE        ++ EW LE+
Sbjct: 62   ILGSVIRL-----NDAEHRATLLAMSNTGWRNLTEIVSRGFIEGQQLSIPCVQKEWVLEQ 116

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +   + LI L G H  D+G  + +     AE     W + F +  Y+ + R ++      
Sbjct: 117  S---EDLIILLGQH-SDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTERAGEEDF 172

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ+ + +A+   + +VA + I F++K +F AHE R CIA+G +L + KR K ++ EQ FK
Sbjct: 173  IQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPKNYSPEQYFK 232

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T  +M +LF DIPSAI+NT  +A+RCN+ L+ G   LP FP P    I+ +    S+ GL
Sbjct: 233  TGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTYFEHLSRQGL 292

Query: 303  KKRLLNLYKDPEIYK-CEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            ++RL +LY   E  +  E +R  Y +R+++E++ I+KM F GYFLIV DFIQWAKNN +P
Sbjct: 293  EERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIVMDFIQWAKNNGVP 352

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI+Y
Sbjct: 353  VGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIEY 412

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   YG+ AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI
Sbjct: 413  VAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAI 471

Query: 480  KEEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
              EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ ++  +  
Sbjct: 472  DMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLC 531

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN 594
                T  ++QYDKDD+E  GL+KFDFLGL  L++++  +  I K     T   +  +PL+
Sbjct: 532  DPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSETPLEIANVPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRR 654
            DKD Y +  +ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R
Sbjct: 592  DKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHR 651

Query: 655  KHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
             HG  F Y  P  + VL  TYGIMVYQEQVMQ AQ   GY+LG ADLLRRA+GKKK  EM
Sbjct: 652  MHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEM 711

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
            ++ R+ F  GA +  + +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY S
Sbjct: 712  VKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPS 771

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA LS  M +T+ I  L+ D  +   L +LPP++N+S Y+F    E     + I YG
Sbjct: 772  EFMAAVLSSEMQNTDSIVFLIDDC-RNNKLEVLPPSVNMSLYHFHASDE-----RTIVYG 825

Query: 835  LGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGAIKG G+  +++++  R K G + +LFDF  RID K IN+R + +LI +GA DC   +
Sbjct: 826  LGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIE 885

Query: 894  RYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            R  L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK
Sbjct: 886  RSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEK 942

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRGKILI 1008
              LG  L+ H   +Y  E++ FIP  L+EL PT    +   +G++ ++     +  +I+ 
Sbjct: 943  DTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVVDI---ANFPNRIM- 998

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            I +DD +  VE+  N++ +++ K+I++  ++++V G++ E            K F +N  
Sbjct: 999  ITLDDGTARVEISCNHERFQRYKDIVRLEQVVVVEGEIYEREGYDRPMARLSKAFSLNDI 1058

Query: 1069 RILYGKKFSVMFNRTFNISILKK----ILLRFKCKNGLP--FVLYYCINKSIKY-EMKFP 1121
            R    +   V  +       L K    ILL + C   +     L   I +S  Y E+   
Sbjct: 1059 RQKRAQSIQVQLSPDLMTKSLAKDLQAILLPY-CNVDMSQHIGLQLQIEQSFAYAELHLG 1117

Query: 1122 LNYKVQPIDDLKLALINLGLYNAI-IEY 1148
              +KV P D+L   L +    +AI IEY
Sbjct: 1118 PQWKVAPQDELLAKLRDYFGKDAIFIEY 1145


>gi|374620375|ref|ZP_09692909.1| DNA-directed DNA polymerase III PolC [gamma proteobacterium HIMB55]
 gi|374303602|gb|EHQ57786.1| DNA-directed DNA polymerase III PolC [gamma proteobacterium HIMB55]
          Length = 1146

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1160 (41%), Positives = 722/1160 (62%), Gaps = 35/1160 (3%)

Query: 1    MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
            M P F+HLR+HSE+S+ DGL+R+  ++++ A    PA+A+TD +N FG+IK YK+A  +G
Sbjct: 1    MEPTFVHLRVHSEFSLTDGLVRVGPLMKSVAAAGMPAVAVTDRNNFFGLIKAYKAAEREG 60

Query: 61   IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
            +K IIG D  +  E E +   ++  L ++  GY  L  L+S+AY E    GR  +R +W+
Sbjct: 61   VKLIIGADFEVLEEDERRH--QVTFLAQSTEGYRNLTVLISQAYQEGQILGRPLLRRDWI 118

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            +      GLIALSG   G++G  +  GR   A    R W  +FPD +Y+E+QR  + N  
Sbjct: 119  QAKS--QGLIALSGGRNGEVGQHLIAGRPQEALTALRWWMSLFPDRYYLELQRTGRENEE 176

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +AS  N P+VAT+ + FL   E+ AHE R CI +G  L++ +R + F+++Q 
Sbjct: 177  DYLHSAVELASAENCPVVATNEVCFLSPDEYDAHEARVCIGDGRTLNDPRRPRHFSEQQY 236

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +T  EM  LF DIP AI+NT  IA RC+ ++E GK  LP FPTP  ++I   L + S  
Sbjct: 237  LRTPDEMAALFEDIPEAIENTFHIAARCSTEIELGKAYLPDFPTPDGVSIEQHLENLSNE 296

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL KRL  L  D      +   Y+ RL+FE++ I +M F GYFL+V DFI+W K N IPV
Sbjct: 297  GLDKRLAVLNVD------DVQVYQDRLKFELDIINQMGFPGYFLVVMDFIRWGKANGIPV 350

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC + RD VI+YV
Sbjct: 351  GPGRGSGAGSLVAYALEITDLDPIEYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVIEYV 410

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YG++AVSQI+TFGTMAAK  +RDV RV D  Y+  D +SKLIPF+ G  +TL  A++
Sbjct: 411  AETYGRNAVSQIITFGTMAAKAVVRDVARVQDKPYALADKMSKLIPFEVG--MTLEKALE 468

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +E QL   +  +   +++ ++A Q+EG+ RN G HAGGV+IAPS+L +F PL+  E   G
Sbjct: 469  QEEQLVNLLNEDSAAQEIWDMAVQLEGLTRNAGKHAGGVVIAPSQLTDFSPLFCDEEGHG 528

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
            +++QYDK+D+E+ GL+KFDFLGL TL+I+D  +  I + +       +N +PL+D   Y+
Sbjct: 529  LVTQYDKNDVEDAGLVKFDFLGLRTLTIIDWAVAMINERDDIQEPVDINHIPLDDGAVYS 588

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ A T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   +++NF  RKHG 
Sbjct: 589  LLQSAETTAVFQLESRGMKELIKSLRPDCFEDIIALVALFRPGPLQSGMVENFIDRKHGR 648

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      + +L  TYGI++YQEQVMQIAQ L GY+LG ADLLRRA+GKKK  
Sbjct: 649  EQVSYPDAQYQHEWLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPE 708

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK HY
Sbjct: 709  EMAKQRSVFEEGAKEKGVDPTLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKRHY 768

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  +D+T+K+ + ++D  K  GL +  PNI   K++F     S  +  +I 
Sbjct: 769  PAEFMAAVMSSEIDNTDKL-LSLRDECKRMGLVVKAPNILEGKHHF-----SVNREGQII 822

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YGLG IKG G   I  ++  R    FT+LFD   R D + +NRR + +LI SGA D    
Sbjct: 823  YGLGGIKGLGGGPIGDLLEARGDSAFTDLFDMCSRTDPRKVNRRALEALIKSGALDELGA 882

Query: 893  KRYMLVASIDVALKNAEKTK--KFINQLSLFKN--DDNNNLKEYLNYVKVPSWSKKQELI 948
            +R +L++++D AL+ AE++   +      LF            Y ++ +  SW+ +  L 
Sbjct: 883  ERSVLMSALDDALRAAEQSAANEAAGMGDLFGEVVPTAGTGDPYRDHRRARSWTLRDILA 942

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILI 1008
             EK+ LG  LS H    ++ E+R+F P  + EL       V+G+I +++L  T RG + +
Sbjct: 943  GEKESLGSFLSGHPMDEFQQEVRKFSPRSIRELTAGSKQWVAGLIVDVRLVKTQRGTMAV 1002

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            + +DD +  +E    +++YE+N+++L ++++++  G++  D F   + + A+    +  A
Sbjct: 1003 LQLDDGTGQIEATAYSEVYEQNRDLLVKDQIVLADGRLQMDDFRGQLSLRAKSFTTLEAA 1062

Query: 1069 RILYGKKFSVMFN-RTFNISILKKILLRFKCKNG-LPFVLYYCINKSIKYEM-KFPLNYK 1125
            R    ++  +  N       +  ++   F    G  P V+ Y   +S    M +F   Y+
Sbjct: 1063 RSSRVRELKLGLNSEAIERGVSAELKRAFSAHTGDCPIVVEY--KQSAGSAMVRFGDRYR 1120

Query: 1126 VQPIDDLKLALINLGLYNAI 1145
            ++P D L   L  L  ++A+
Sbjct: 1121 IKPTDTLLDQLKELVGHDAV 1140


>gi|374313973|ref|YP_005060402.1| DNA polymerase III, a subunit [Serratia symbiotica str. 'Cinara
            cedri']
 gi|363988199|gb|AEW44390.1| DNA polymerase III, a subunit [Serratia symbiotica str. 'Cinara
            cedri']
          Length = 1162

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1164 (43%), Positives = 740/1164 (63%), Gaps = 43/1164 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL +I  +++ AA    PALAITD +NL G+IKFY SA++ GIK
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIESLVKKAATLSMPALAITDFTNLCGLIKFYISAWSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE--IRIEWL 120
            PIIG D  +  +    + + L +L  NN GY  L  L+S+AY     YG A   I  +WL
Sbjct: 64   PIIGTDFRMLIDALGDELADLTVLATNNIGYKNLTLLISRAY--QCGYGLAGPIINRDWL 121

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
               ++ +GL+ LSGA  GD+G  +  G     E     + K FP+ +Y+E+ R  + N  
Sbjct: 122  --IEHHEGLLLLSGAINGDVGKFLLRGNEMQVERSLDFYQKYFPNCYYLELIRTGRSNEE 179

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A+   +PIVAT+ ++FL++++F AHE+R  I  G  L++ +R + ++ +Q 
Sbjct: 180  NYLHAAVILATTRGVPIVATNDVRFLEESDFDAHEIRVAIHAGVTLNDPRRSRNYSFQQY 239

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             +++ EM KLF DIP A+ N++EIAKRCN+ +  G+  LP+FPT  +I   DFL+ KSK 
Sbjct: 240  MRSEDEMCKLFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPT-GDITTKDFLVLKSKE 298

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++RL  L+ D ++    +  Y +RL  E++ I +M F GYFLIV +FIQW+K N+IPV
Sbjct: 299  GLEERLKFLFPDAKVRMQRRPEYHQRLNTELKVINQMGFPGYFLIVMEFIQWSKENNIPV 358

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L ITD+DPL + LLFERFLNP R+SMPDFDIDFC E RD VI +V
Sbjct: 359  GPGRGSGAGSLVAYALKITDLDPLEFGLLFERFLNPERVSMPDFDIDFCMEKRDLVIDHV 418

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI+TFGTM AK  IRDVGRVL   Y F D I+KL+P  PG  +TL  A+ 
Sbjct: 419  SHMYGREAVSQIITFGTMTAKAVIRDVGRVLGYPYGFVDRIAKLVPLNPG--MTLEKALI 476

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQL E  K++EEVR LI++A+++EG+ RN G HAGGV+IAP+++ +F PLY       
Sbjct: 477  SEPQLYEIYKSDEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDADGHH 536

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDT 598
             ++Q+DK+D+E +GL+KFDFLGL TL+I+D  +  I    +K  N   S+  +PLNDK +
Sbjct: 537  PVTQFDKNDVEYVGLVKFDFLGLRTLTIIDWALEMINARRSKHGNAPISIATIPLNDKKS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            +++L+++ T A+FQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKH
Sbjct: 597  FDVLQRSETTAIFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFINRKH 656

Query: 657  G-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD        K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK 
Sbjct: 657  GCEEISYPDIQWQHESLKLVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKD 716

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R  F+ GA   G++   + +IFN +EKFAGYGFNKSH+ AYALLSY T +LK 
Sbjct: 717  PVEMAKQRSIFEEGAKLRGVNGELSVKIFNLVEKFAGYGFNKSHSAAYALLSYQTLWLKA 776

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA ++  MD+T+K+  LV + ++  GL ILPP+IN  +Y F   +   G   +
Sbjct: 777  HYPAEFMAAVMTADMDNTDKVVGLVDECLRM-GLKILPPDINSGQYRFH--VNDAG---E 830

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKFG---FFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
            I YG+GAIKG G+S IE+I+  R  G    F +LFD   R D K +NRR +  LI SGA 
Sbjct: 831  ILYGIGAIKGVGQSAIESIIKARHSGEKECFKDLFDLCVRNDTKKLNRRTLEKLIMSGAL 890

Query: 888  DCFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQ 945
            D     R  L++S+  ALK A +  K   I Q+ +F        +    Y  V  W ++ 
Sbjct: 891  DRLGPHRAALMSSLSDALKLAHQHAKAESIGQVDMFGGLSTKPAQLGQYYDNVSHWQEQV 950

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPT---YSCTVSGIITELKLKTT 1001
             L  E++ LG  L+ H    Y  EI+++     L +++PT      T  G++   ++  +
Sbjct: 951  VLDGERQTLGLYLTGHPITQYLQEIKRYSDGQRLKDIQPTGRGQMTTAIGLVVATRVMVS 1010

Query: 1002 YRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             RG +I I  +DD S  +++I+  +  EK +++++++ +LIVSG+V  + F   +++ A 
Sbjct: 1011 KRGNRIGICTLDDRSGFLDIILLTEALEKYRHLMEKDRILIVSGQVSVNDFSGGLKMLAR 1070

Query: 1061 KIFDINVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIK 1115
            ++ DI+ AR       ++       N  F ++ L++ L  ++    +P  LYY   +  K
Sbjct: 1071 EVMDISEAREKAAHSLTISLTDEQINDHF-LNCLRQSLEPYRSGR-IPVHLYYQ-REEAK 1127

Query: 1116 YEMKFPLNYKVQPIDDLKLALINL 1139
              + F   ++V+P ++L + L  L
Sbjct: 1128 ARLCFGTTWRVKPTNNLLMNLRTL 1151


>gi|209695836|ref|YP_002263766.1| DNA polymerase III subunit alpha [Aliivibrio salmonicida LFI1238]
 gi|208009789|emb|CAQ80096.1| DNA polymerase III, alpha chain [Aliivibrio salmonicida LFI1238]
          Length = 1159

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1154 (42%), Positives = 730/1154 (63%), Gaps = 36/1154 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HLR+HS++S+IDGL ++  +++  A    PA+ +TD +NL G++K+Y +A+  GIKP
Sbjct: 5    KFVHLRVHSDFSLIDGLSKVPPLVKKMAELNMPAMGLTDFTNLCGLVKYYFAAHGAGIKP 64

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            IIG D  + +     +   L +L KNN GY  L  L+SKAY+         +  EWL ++
Sbjct: 65   IIGADFKVQSTEFGNELFNLTVLAKNNEGYKNLTLLISKAYLRGHVQHTPVMDKEWLIEH 124

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            K  +GLI LSGA  GD+G A+  G  ++       +   FPD++Y+E+ R  + + +  +
Sbjct: 125  K--EGLIILSGAKNGDVGKALLKGNQELVNECVDFYKTYFPDHYYLELIRTGRVDEDSYL 182

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
               +++A    LP+VAT+ + F+K  +F AHE+R  I +G  L + +R K ++ +Q  +T
Sbjct: 183  HFAVDLAEKEGLPVVATNDVCFIKADDFDAHEIRVAIHDGFTLEDPRRPKNYSSQQYLRT 242

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
            + EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL+
Sbjct: 243  EEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMKIEDFLVKKSQEGLE 301

Query: 304  KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
            +RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPG
Sbjct: 302  RRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNLIPVGPG 361

Query: 364  RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
            RGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI++V + 
Sbjct: 362  RGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDKVIEHVAEI 421

Query: 424  YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
            YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D +SKLIP  PG  +TL+ A + EP
Sbjct: 422  YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLIPTDPG--MTLAKAFEAEP 479

Query: 484  QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
            QL E    +EEVR LI++ + +EG  RN G HAGGV+I+P+ + +F PLY        ++
Sbjct: 480  QLPELYNADEEVRALIDMCRILEGCTRNAGKHAGGVVISPTTITDFSPLYCDADGNFPVT 539

Query: 544  QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNL 601
            Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     K       +  +PL+D+ ++ L
Sbjct: 540  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRREKEGKEAVRIESIPLDDQASFKL 599

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-E 658
            L+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E
Sbjct: 600  LQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 659

Query: 659  YFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
              +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  E
Sbjct: 660  EVSYPDVNWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEE 719

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M + R  F++GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY 
Sbjct: 720  MAKQRGTFKDGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 779

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            + FMAA ++  MD+T+KI  LV +  +   L +LPP++N   Y F   ++ DG    I Y
Sbjct: 780  AEFMAAVMTADMDNTDKIIGLVDECFR-MKLKVLPPDVNAGLYRFN--VDEDG---AIVY 833

Query: 834  GLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            G+GAIKG G+  IE I+  R K G+F +LFDF  RID K  N+RI+  LI SGA D    
Sbjct: 834  GIGAIKGVGEGPIENIIEARNKGGYFRDLFDFCSRIDTKKTNKRIVEKLIRSGALDRLGP 893

Query: 893  KRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEE 950
             R  L+AS++ A+K A +  +     Q  +F        +    Y  VP W +K  L  E
Sbjct: 894  HRAALMASVEDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYTHVPRWPEKVWLEGE 953

Query: 951  KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-KI 1006
            ++ LG  L+ H    Y  E+ ++    L++   T    + TV+G++   ++ TT RG +I
Sbjct: 954  RETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTKRGSRI 1013

Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
             ++ +DD S  +EV++ +   ++  ++L+ +++++VSG+V  D F   ++++A ++  + 
Sbjct: 1014 GLMTLDDRSGRMEVMLFSDALDRYADLLETDKIVLVSGQVSFDDFNGGLKMSAREVMSLG 1073

Query: 1067 VARILYGKKFSV-MFNRTFNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPLN 1123
             AR  Y +  SV + +   N    ++   +L       +P  +YY      + ++     
Sbjct: 1074 DAREKYARGLSVSVTDAQINNQFFERFSQILEPNRAGTVPVNVYYQ-RADARVKLVLGTE 1132

Query: 1124 YKVQP----IDDLK 1133
            ++V P    IDDLK
Sbjct: 1133 WRVTPTDQLIDDLK 1146


>gi|424741571|ref|ZP_18169915.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-141]
 gi|422944629|gb|EKU39618.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-141]
          Length = 1187

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1164 (42%), Positives = 709/1164 (60%), Gaps = 39/1164 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D++ AA  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            ++G  + +     +    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   LLGSTIRL-----DDAQHRATLLAMSDVGWKSLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     A      W + F +  Y+ + R ++P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTERPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ FKT
Sbjct: 174  QEAAKLAAKYNIGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRIYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT  IAKRCN+KL+ G   LP +P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTIDTYFEHLSKVGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+++E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI 
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAID 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      E+  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNEDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K        ++  +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDQLNILHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  AKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLKGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA ++  M +T+ +  L+ D  +   L +LPP++N+S Y+F          K I YGL
Sbjct: 773  FMAAVMTSEMQNTDSVVFLIDDC-RNNDLEVLPPSVNMSTYHFHA-----SNDKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R++G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQYGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  ASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP+ L+E+  T    V+ +   L +        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPVKLNEITATRR-GVTTVYAGLVIDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTGRIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLTKAFTLNEIRQKR 1062

Query: 1073 GKKFSVMFNRTFNISILKK----ILLRFKCKNGL--PFVLYYCINKS-IKYEMKFPLNYK 1125
                 +     F    L K    I+L F C   +     L   I++   + E++F   +K
Sbjct: 1063 ANSIQIKLTEEFMQPTLAKDLQNIILPF-CNVDMHQHIALQLQIDQPYAQAELQFGPQWK 1121

Query: 1126 VQPIDDLKLALIN-LGLYNAIIEY 1148
            V P+D+L   L +  G  N  IEY
Sbjct: 1122 VAPLDELLAKLRDYFGKDNIYIEY 1145


>gi|145634848|ref|ZP_01790556.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA]
 gi|229844610|ref|ZP_04464749.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1]
 gi|145268014|gb|EDK08010.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA]
 gi|229812324|gb|EEP48014.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1]
          Length = 1159

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1157 (42%), Positives = 729/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D  ++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPKSFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  +D+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEIDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   I Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|410626439|ref|ZP_11337200.1| DNA polymerase III subunit alpha [Glaciecola mesophila KMM 241]
 gi|410153978|dbj|GAC23969.1| DNA polymerase III subunit alpha [Glaciecola mesophila KMM 241]
          Length = 1139

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1138 (43%), Positives = 712/1138 (62%), Gaps = 30/1138 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL ++  +I    +   PA+A+TD  N+ G++KFY+ A++ GIKPIIG D W+ ++ 
Sbjct: 1    MLDGLNKVKPLIAHVKSLNMPAVALTDQMNMCGLVKFYEQAHSNGIKPIIGTDFWVQSDA 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
                  RL LL  NN GY  +  L+SKAY+      +A I  EWL   ++ +G+I LSG 
Sbjct: 61   LEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAVIDQEWL--VEHSEGVIILSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G+ +  G   +AE     + + FPD FY+E+ R  +      I + +  A   +L
Sbjct: 119  RMGDLGVYLTKGNVGLAEKATTFYQQHFPDRFYLELTRTGRLGEEDYIHRAVEWAGQHDL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F+    F AHE+R  I +G  L++ +R K ++++Q  +T  EM  LF DIP
Sbjct: 179  PVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLYSEQQYMRTSEEMCDLFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             AI+NT+EIAKRCN+ +  G   LP FPT  +++I DFL+  S+ GL+KRL  L+ D E 
Sbjct: 239  QAIENTVEIAKRCNVSVLLGTYFLPDFPT-GDMSIADFLVKVSEEGLEKRLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
               ++  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RLAKRPEYDERLKIELVVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V + YG+DAVSQI+TF
Sbjct: 358  LGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A +EEP+L E    +EEV
Sbjct: 418  GTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPG--MTLTKAFEEEPRLPELYAYDEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+ +EG+ RN G HAGGV+IAP K+ +F PLY  +     ++Q+DK+D+E  GL
Sbjct: 476  KDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPLYCDDEGKNPVTQFDKNDVETAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLES 615
            +KFDFLGL TL+I+   I  I     K  +  +  +P++DK ++ LL+++ T AVFQLES
Sbjct: 536  VKFDFLGLRTLTIIQWAIDMISA--GKGVDIDILAIPMDDKKSFKLLQRSETTAVFQLES 593

Query: 616  QGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----T 667
            +GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD        
Sbjct: 594  RGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDATYQHECL 653

Query: 668  KDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIK 727
            K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  EM + R+ F+ GA  
Sbjct: 654  KEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAMGKKKPEEMAKQRESFETGAKN 713

Query: 728  YGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDD 787
              +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA +S  MD+
Sbjct: 714  NNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMSADMDN 773

Query: 788  TNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIE 847
            T+KI  LV D  +  G+++LPP++N   Y F   ++S+G   +I YG+GAIKG G+  I 
Sbjct: 774  TDKIVTLV-DECQRMGITLLPPDVNAGSYKF--TVDSEG---RIVYGIGAIKGVGEGPIA 827

Query: 848  AIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALK 906
            AI+  R+    FT+LFDF  ++D K IN+R++  L+ +GA D     R  ++A++  A+ 
Sbjct: 828  AIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLGPHRASIMATLPEAIS 887

Query: 907  NAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFC 964
             A++  K     Q  +F        +    + KVP WS+K  L  EK  LG  L+ H   
Sbjct: 888  AADQHAKAEAHGQSDMFGLLTTEPEQVEQAFAKVPPWSEKVWLDGEKVTLGLYLTGHPIN 947

Query: 965  IYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRGKIL-IIVIDDNSNSVEV 1020
             Y  EI+ +    L +LKPT+   VS   G++  +++ T  RG+   I+ +DD S  ++V
Sbjct: 948  QYAQEIKHYCTGRLIDLKPTHKDVVSYAVGLVIGVRVMTNKRGRRWGIVTLDDKSARIDV 1007

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
                 L+E+ + IL+ + +L+VSG+V  D F     I A    DI  AR    K  S+ F
Sbjct: 1008 RFFPDLFEQYEEILQSDRILVVSGQVSFDEFSGGNTIGARDAMDIVQAREKNAKWLSMQF 1067

Query: 1081 NRTF-NISILKKI-LLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLAL 1136
              ++ N S L K+  +    + G   V  + ++   +  +     + V P D L   L
Sbjct: 1068 ESSWCNASTLAKLQAILAPYQGGSCPVQAHVVHPDAEVTLALGAQWYVTPEDQLLFEL 1125


>gi|260583164|ref|ZP_05850944.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127]
 gi|260093782|gb|EEW77690.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127]
          Length = 1159

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1157 (42%), Positives = 728/1157 (62%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G++ FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQMLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFNR-TFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEYQITPSFIKQLKALLEPVSGGTLPINMYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|217974045|ref|YP_002358796.1| DNA polymerase III subunit alpha [Shewanella baltica OS223]
 gi|217499180|gb|ACK47373.1| DNA polymerase III, alpha subunit [Shewanella baltica OS223]
          Length = 1157

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1158 (41%), Positives = 732/1158 (63%), Gaps = 35/1158 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S+ DG+ ++  ++         A+A+TD +N  G++KFY   +  GIK
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+       +   L ++  NN GY  L +++S+AY+     GR  I  EWL  
Sbjct: 64   PIIGADFWMQVPGFEGELCALTIIAMNNIGYQNLTQIISQAYLRGQVAGRVVIDQEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y +G++ LSGA  GD+G A+  G +   E+    +   F D +++E+ R  +P+    
Sbjct: 122  LTYNEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A +  +P+VAT+ + FLK  +F AHE+R  I +G  L++ +R KK++++Q  +
Sbjct: 182  LHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP+A+ N++EIAKRCN+ +   +  LP FPT  +++I DFL+  S+ GL
Sbjct: 242  SEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPT-GDMSIEDFLVDCSRKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +PE+   ++  Y +RL  E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V+ LI++ +++EG+ RN G HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  + K+  +       +  + L D   + 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVRNGRKPIRIEAISLTDPACFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+K  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      +++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +  GL ++PP++N   + F   ++ D    +I 
Sbjct: 779  PAQFMAAVMSADMDNTDKIVTLV-DECERMGLPLIPPDVNKGLFKF--TVDDD---LRIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +E+I+  RK G F +LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDNLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKK--FINQLSLFK--NDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A++ A++  K   I Q  +F   N +  + K+   +V+   W  K  L 
Sbjct: 893  HRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQ--QFVECTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV---SGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++ +    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKIAKAAGLVVATRVMLTKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +E+++  + +EK  ++L+++ +LI  G+V  D F    R+ A  I D
Sbjct: 1011 KMGLLTLDDKSARLEIMLFTEAFEKFNHLLEKDRILICEGEVSYDDFAGGNRMTARNIID 1070

Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKILLRFK-CKNG-LPFVLYYCINKSIKYEMKFP 1121
            I+ AR  + K   + M       S L          +NG +P V+ Y   ++ K + +  
Sbjct: 1071 ISEARSHFAKALEIDMDGSELTPSALDTFEQALSPWRNGAVPVVINYTQAQA-KGQFRLA 1129

Query: 1122 LNYKVQPIDDLKLALINL 1139
              ++V P DDL L+L +L
Sbjct: 1130 DAWRVNPTDDLMLSLESL 1147


>gi|145637722|ref|ZP_01793374.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH]
 gi|145269071|gb|EDK09022.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH]
          Length = 1159

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1157 (42%), Positives = 731/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A + +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAEHCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  +D+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEIDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   I Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L++L
Sbjct: 1132 QWSIIPTDEILTELVDL 1148


>gi|16272681|ref|NP_438899.1| DNA polymerase III subunit alpha [Haemophilus influenzae Rd KW20]
 gi|260579831|ref|ZP_05847661.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae
            RdAW]
 gi|1169392|sp|P43743.1|DPO3A_HAEIN RecName: Full=DNA polymerase III subunit alpha
 gi|1573746|gb|AAC22399.1| DNA polymerase III, alpha subunit (dnaE) [Haemophilus influenzae Rd
            KW20]
 gi|260093115|gb|EEW77048.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae
            RdAW]
          Length = 1159

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1157 (42%), Positives = 728/1157 (62%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR H+++S+ID ++++  +++A A +   A+ +TD +N  G++ FY    + G+K
Sbjct: 5    PRFIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFETE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQFKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|114562463|ref|YP_749976.1| DNA polymerase III subunit alpha [Shewanella frigidimarina NCIMB 400]
 gi|114333756|gb|ABI71138.1| DNA polymerase III, alpha subunit [Shewanella frigidimarina NCIMB
            400]
          Length = 1158

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1156 (42%), Positives = 731/1156 (63%), Gaps = 37/1156 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+ DG+ ++  +I AA N    A+A+TD +N  G++KFY +    GIK
Sbjct: 4    PRFVHLRVHSDYSMSDGVAKVKPIIAAAENQGMAAIALTDQNNFCGLVKFYGACNGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+      K+   L ++  NN GY  L +L+S+AY+      R  I  +WL K
Sbjct: 64   PIIGADFWVQTPGFEKEFCALTIIAMNNEGYQNLTQLISEAYLRGHVDNRVVIDQDWLVK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  GLI +SGA  GD+G A+  G  +  E+    + + F D +Y+E+ R  + +    
Sbjct: 124  --YNSGLIIISGAKDGDVGKALLKGNQNQVESLIAFYQQHFEDRYYLELIRTGRAHEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +AS   LP+VAT+ + FLK+ +F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHMAVELASIKGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLVDPRRPKTYSDQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EMI LF DIPSAIQN++EIAKRCN+ +   +  LP FPT  +++I DFL++ S  GL
Sbjct: 242  TEDEMIALFADIPSAIQNSVEIAKRCNVTIRLNEYFLPNFPT-GDLSIEDFLVNVSVKGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ +P++   ++  Y +RL+ E++ I +M F GYFLIV +FIQW K+N IPVGP
Sbjct: 301  EERLEFLFPNPQVRAEKRGEYDERLEIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG++AVSQI+TFGTMAAK  +RDVGRVL   Y F + ++KLIP +PG  +TL+ A + E
Sbjct: 421  LYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKLIPAEPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V++LI++ +++EG+ RN G HAGGV+IAP+++ +F PLY        +
Sbjct: 479  PALPEAYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRITDFAPLYCDAEGLNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I  + I       S+  +PL D   + 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLIKEGKDPVSIEAIPLADPACFR 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL++  T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        +++LS TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S FMAA +S  MD+T+KI  LV D  +  GL ++PP++N   + F   ++ D     I 
Sbjct: 779  PSQFMAAVMSADMDNTDKIVTLV-DECERMGLPLIPPDVNKGLFKF--TVDDD---LNIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            YG+GAIKG G+  +++I+  RK G FT+LFDF  RID K +N+R+I  LI +GA D    
Sbjct: 833  YGIGAIKGVGEGPVDSILEARKNGPFTDLFDFCARIDLKKLNKRVIEKLILAGALDTLGP 892

Query: 893  KRYMLVASIDVALKNAEKTKKFI----NQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
             R  ++A++  A+  A +  K      N +    N +  + K+  N+V    W  K  L 
Sbjct: 893  HRASMMATLPQAISAAAQHAKAEATGQNDMFGLLNSEPEDSKQ--NFVHCTPWPDKIWLE 950

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG- 1004
             E++ LG  L+ H    Y  E++Q+    L ++ PT    +   +G++   ++  T RG 
Sbjct: 951  GERETLGLYLTGHPINQYLKELKQYTNGRLKDIHPTERGKTVKAAGLVVATRVMITKRGS 1010

Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
            K+ ++ +DD S  +EV++  + +EK  ++L+++ +LI  G V  D F    R+NA  I +
Sbjct: 1011 KMGLVTLDDKSARLEVMLFTEPFEKFGHMLEKDRILICEGDVSFDDFSGGNRMNARNIIE 1070

Query: 1065 INVARILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKF 1120
            I  AR  + K   +  +        +   ++ L  ++ K  +P V+ Y   ++   ++  
Sbjct: 1071 IGEARSHFAKAVEINVHGDDVTPDWLQTFEQTLTPWR-KGAVPVVINYTKQQA-SGKIVL 1128

Query: 1121 PLNYKVQPIDDLKLAL 1136
               ++V P D+L LAL
Sbjct: 1129 GEEWRVNPSDELMLAL 1144


>gi|417844495|ref|ZP_12490537.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M21639]
 gi|341956692|gb|EGT83111.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M21639]
          Length = 1159

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1157 (41%), Positives = 731/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSALCGDEYFDLTLLAKNNEGYKNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++G+I LSG   GD+G  +        E+    + + F D+FY+ + R  +P+    
Sbjct: 122  IEHREGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFYLALTRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + ++   NLP+VAT+ + FL   +F AHE+R  I +G  L + KR K++T +Q F+
Sbjct: 182  IQAALKLSERCNLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKRYTPQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM KLF DIPSAI+NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ K+K GL
Sbjct: 242  SEDEMCKLFADIPSAIENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMVREGKPRVDITAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAI+G G+  I+A+VT R  G  F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIRGVGEGPIDALVTARNEGRIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      + +    Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEEVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTQLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|148827930|ref|YP_001292683.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG]
 gi|148719172|gb|ABR00300.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG]
          Length = 1159

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1157 (42%), Positives = 727/1157 (62%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G++ FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFETE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   I Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQFKALLEPVSGGTLPINVYYQSPKG-RVLLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|342903327|ref|ZP_08725138.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M21621]
 gi|341955431|gb|EGT81887.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M21621]
          Length = 1159

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1157 (41%), Positives = 731/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + N +   +   L LL KNN GY  +  LLSKAY    +     I   WL  
Sbjct: 65   PIIGADVKVKNALCGNEMFDLTLLAKNNEGYKNITLLLSKAYQRGYD-DYPYIDQNWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++++G+I LSG   GD+G  +        E+    + + F D+FY+ + R  +P+    
Sbjct: 122  IEHREGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFYLALTRTGRPDEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A +  LP+VAT+ + FLK  +F AHE+R  I +G  L + KR K++T +Q F+
Sbjct: 182  IQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIRDGYTLDDPKRPKRYTPQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ K+K GL
Sbjct: 242  SEEEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKAKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHESLKAILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      + +    Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEEVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D +   L+NL
Sbjct: 1132 QWSIIPTDKILTELVNL 1148


>gi|219871559|ref|YP_002475934.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165]
 gi|219691763|gb|ACL32986.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165]
          Length = 1158

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1096 (43%), Positives = 708/1096 (64%), Gaps = 35/1096 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+I+GL ++  +I+A   +   A+A+TD +N  G+++FY  A   G+K
Sbjct: 4    PRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI---EW 119
            PI+G DV +  E E+++   L LL KNN GY  +  LLSKAY +    G  E  +    W
Sbjct: 64   PIVGADVMVRPEPESEELYELTLLAKNNTGYHNITLLLSKAYQQ----GYVEFPVVEKAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +  + +G+I LSG   GD+G A+       AE     + + F +++Y+ + R  + + 
Sbjct: 120  LAE--HNEGVILLSGGSNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSLCRTGRSDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               IQQ +  +    +P+VA + + FLK+ +F AHE+R  I +   L + KR +K++++Q
Sbjct: 178  ERYIQQAVTFSQKFAIPLVAVNDVMFLKQNDFEAHEIRVAIHDSFTLDDPKRPQKYSEQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM +LF D+P AI+NT+ IA+RCN+ +  G+  LP FPT  +++  DFL+ K+K
Sbjct: 238  YFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPT-GDLSTEDFLVKKAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ DP++   ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL+ A 
Sbjct: 417  VSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY      
Sbjct: 475  EAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSYGL 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   K       +  +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPPVRIESIPLDDEK 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            T+ LLK A T AVFQLES+GMK+++   +P  FE+IIAL++L+RPGP++  +++NF  RK
Sbjct: 595  TFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLESGMVQNFIDRK 654

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E   YPD +      + +L  TYGI+VYQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM   R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            THY + FMAA ++  MD+T+KI     + I   GL+++PP+IN  K+ F     S  +  
Sbjct: 775  THYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDINSGKHRF-----SVNEKG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  I+A++  R K G F +LFD T R+D + +NRR    LI +GAFD
Sbjct: 829  EIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIMAGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ +++ AL+ +++  K   + Q  +F        +    Y   P W+++  
Sbjct: 889  KLGPHRAALMKNLEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKWTEQTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYR 1003
            L  EK  LG  LS H    +  E+  + P  L+E++PTY   + TV+G+I   ++ TT +
Sbjct: 949  LDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARIATTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  I+D S  +++ + ++  E   ++L++++++I +G V  D F   +++   ++
Sbjct: 1009 GSRIGIATIEDRSGKMDLTLFSEALENYGDLLQKDQIIIATGAVQHDDFSGGLKMAVREM 1068

Query: 1063 FDINVARILYGKKFSV 1078
              ++ AR  Y +  ++
Sbjct: 1069 ITLDEARSRYARSLAL 1084


>gi|378696941|ref|YP_005178899.1| DNA polymerase III subunit alpha [Haemophilus influenzae 10810]
 gi|301169460|emb|CBW29060.1| DNA polymerase III alpha subunit [Haemophilus influenzae 10810]
          Length = 1159

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1157 (42%), Positives = 729/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G++ FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  +D+T+KI  L  + ++  GL ++PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEIDNTDKIVGLYDECLR-MGLKVMPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   I Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQFKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|386266528|ref|YP_005830020.1| DNA polymerase III subunit alpha [Haemophilus influenzae R2846]
 gi|309973764|gb|ADO96965.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2846]
          Length = 1159

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1157 (42%), Positives = 731/1157 (63%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGTDVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  +D+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEIDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+VT R + G F +LFD   R+D K INRR   +LI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFENLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   I Q  +F      + +    Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEEVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|169633232|ref|YP_001706968.1| DNA polymerase III subunit alpha [Acinetobacter baumannii SDF]
 gi|169152024|emb|CAP00899.1| DNA polymerase III, alpha chain [Acinetobacter baumannii]
          Length = 1187

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1171 (42%), Positives = 716/1171 (61%), Gaps = 53/1171 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D+++ A  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSTIRL-----NDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ FKT
Sbjct: 174  QEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT +IAKRCN+ L+ G   LP++P P    I+ +    SK GLK
Sbjct: 234  SDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLK 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K +      +++ +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNSDSNDPLNISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  PKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+ G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  SSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP  L+E+  T    V+ +   L L        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPAKLNEITATRR-GVTTVYAGLVLDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLNKAFSLNEIR--- 1059

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC---INKSI-----------KYEM 1118
             +K +     +  I +   +L     K+    +L YC   +++ I           + E+
Sbjct: 1060 -QKRA----NSIQIKLTHDLLQPSLAKDLQNILLPYCNVDMHQHIAIQLQIDQPYAQAEL 1114

Query: 1119 KFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +    +KV P+D+L   L +  G  N  IEY
Sbjct: 1115 QLGPQWKVSPLDELLAKLRDYFGKDNIHIEY 1145


>gi|410618544|ref|ZP_11329487.1| DNA polymerase III subunit alpha [Glaciecola polaris LMG 21857]
 gi|410161928|dbj|GAC33625.1| DNA polymerase III subunit alpha [Glaciecola polaris LMG 21857]
          Length = 1139

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1093 (44%), Positives = 700/1093 (64%), Gaps = 29/1093 (2%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL ++  +I    +   PA+A+TD  N+ G++KFY+ A++ GIKPIIG D W+ +E 
Sbjct: 1    MLDGLNKVKPLISHVKSLNMPAVALTDQMNMCGLVKFYEQAHSNGIKPIIGTDFWVQSEA 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
                  RL LL  NN GY  +  L+SKAY+      RA I  +WL   ++ +G+I LSG 
Sbjct: 61   LEGHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDRAVIEQDWL--IEHSEGVIVLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
             +GD+G+ +  G   +AE   + + + FPD FY+E+ R  +      I + +  A   +L
Sbjct: 119  RMGDLGVYLTKGNVPLAEKATQFYQQHFPDRFYLELTRTGRLGEEDYIHRAVEWAGEHDL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F+    F AHE+R  I +G  L++ +R K ++++Q  +T  EM +LF DIP
Sbjct: 179  PVVATNEVCFISPENFEAHEIRVAIHDGYTLNDPRRPKLYSEQQYMRTSEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             AI+NT+EIAKRCN+ +  G   LP FPT  ++ I DFL+  S+ GL+KRL  L+ D E 
Sbjct: 239  QAIENTVEIAKRCNVSVLLGTYFLPDFPT-GDMTIADFLVKVSEEGLEKRLAFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RL+ E+  I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RLANRPEYDERLKIELVVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V + YG+DAVSQI+TF
Sbjct: 358  LGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  +RDVGRVL   Y F D ISKLIP  PG  +TL+ A +EEP+L E    +EEV
Sbjct: 418  GTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPG--MTLTKAFEEEPRLPELYAYDEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            + LI++A+ +EG+ RN G HAGGV+IAP+K+ +F PLY  +     ++Q+DK+D+E  GL
Sbjct: 476  KDLIDMARILEGVTRNAGKHAGGVVIAPNKITDFAPLYCDDEGKNPVTQFDKNDVETAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLES 615
            +KFDFLGL TL+I+   I  I   + K  +  +  +P++DK  + LL+++ T AVFQLES
Sbjct: 536  VKFDFLGLRTLTIIQWAIDMIS--SGKGVDIDILAIPMDDKKCFKLLQRSETTAVFQLES 593

Query: 616  QGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR-----T 667
            +GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD        
Sbjct: 594  RGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDATYQHECL 653

Query: 668  KDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIK 727
            K++L  TYGI++YQEQVMQIAQ + GYSLG ADLLRRA+GKKK  EM + R+ F+ GA  
Sbjct: 654  KEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAMGKKKPEEMAKQRESFETGAKD 713

Query: 728  YGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDD 787
              +    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA +S  MD+
Sbjct: 714  NNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMSADMDN 773

Query: 788  TNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIE 847
            T+KI  LV D  +  G+++LPP++N   Y F   ++S+G   +I YG+GAIKG G+  I 
Sbjct: 774  TDKIVTLV-DECQRMGITLLPPDVNAGSYKF--TVDSEG---RIVYGIGAIKGVGEGPIA 827

Query: 848  AIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALK 906
            AI+  R+    F++LFDF  ++D K IN+R++  L+ +GA D     R  ++A++  A+ 
Sbjct: 828  AIIEARENHEQFSDLFDFCAKVDTKRINKRVLEKLVYAGALDTLGPHRASIMATLPEAIA 887

Query: 907  NAEKTKKFIN--QLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFC 964
             A++  K  +  Q  +F        +    +VKVP W +K  L  EK  LG  L+ H   
Sbjct: 888  AADQHAKAESHGQSDMFGLLTTEPEQVEQAFVKVPQWPEKIWLDGEKVTLGLYLTGHPIN 947

Query: 965  IYETEIRQFIPIYLSELKPTYSCTVS---GIITELKLKTTYRGKIL-IIVIDDNSNSVEV 1020
             Y  EI+ +    L +LKPT+   +S   G++  +++ T  RG+   I+ +DD S  ++V
Sbjct: 948  QYAQEIKHYCTGRLVDLKPTHKDQISYAVGLVLGVRVMTNKRGRRWGIVTLDDKSARIDV 1007

Query: 1021 IINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
                 L+E+ + IL+ + +L+VSG+V  D F     I A    DI  AR    K  S+ F
Sbjct: 1008 RFFPDLFEQYEEILQSDRILVVSGQVSFDEFSGGNTIGARDAMDIVQAREKNAKWLSMQF 1067

Query: 1081 NRTF-NISILKKI 1092
            + ++ N S L K+
Sbjct: 1068 DSSWCNASTLAKL 1080


>gi|294650615|ref|ZP_06727970.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter
            haemolyticus ATCC 19194]
 gi|292823498|gb|EFF82346.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter
            haemolyticus ATCC 19194]
          Length = 1187

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1168 (43%), Positives = 712/1168 (60%), Gaps = 47/1168 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +H+E+SI + ++RI D+++AA ND  PALA+TDLSNL   +KFY++   KGIKP
Sbjct: 2    QFVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW-LEK 122
            I+G  + +     N    R  LL  +N G+  L E++S+ +IE        ++ EW LE+
Sbjct: 62   ILGSVIRL-----NDAEHRATLLAMSNTGWRNLTEIVSRGFIEGQQLSIPCVQKEWVLEQ 116

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +   + LI L G H  D+G  + +     AE     W + F +  Y+ + R ++      
Sbjct: 117  S---EDLIILLGQH-SDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTERAGEEDF 172

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ+ + +A+   + +VA + I F++K +F AHE R CIA+G +L + KR K ++ EQ FK
Sbjct: 173  IQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPKNYSPEQYFK 232

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T  +M +LF DIPSAI+NT  +A+RCN+ L+ G   LP FP P    I+ +    S+ GL
Sbjct: 233  TGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTYFEHLSRQGL 292

Query: 303  KKRLLNLYKDPEIYK-CEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            ++RL +LY   E  +  E +R  Y +R+++E++ I+KM F GYFLIV DFIQWAKNN +P
Sbjct: 293  EERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIVMDFIQWAKNNGVP 352

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI+Y
Sbjct: 353  VGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIEY 412

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   YG+ AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI
Sbjct: 413  VAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAI 471

Query: 480  KEEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
              EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ ++  +  
Sbjct: 472  DMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLC 531

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN 594
                T  ++QYDKDD+E  GL+KFDFLGL  L++++  +  I K     T   +  +PL+
Sbjct: 532  DPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSETPLEIANVPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRR 654
            DKD Y +  +ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R
Sbjct: 592  DKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHR 651

Query: 655  KHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
             HG  F Y  P  + VL  TYGIMVYQEQVMQ AQ   GY+LG ADLLRRA+GKKK  EM
Sbjct: 652  MHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEM 711

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
            ++ R+ F  GA +  + +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY S
Sbjct: 712  VKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPS 771

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA LS  M +T+ I  L+ D  +   L +LPP++N+S Y+F    E     + I YG
Sbjct: 772  EFMAAVLSSEMQNTDSIVFLIDDC-RNNKLEVLPPSVNMSLYHFHASDE-----RTIVYG 825

Query: 835  LGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGAIKG G+  +++++  R K G + +LFDF  RID K IN+R + +LI +GA DC   +
Sbjct: 826  LGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIE 885

Query: 894  RYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            R  L+  +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK
Sbjct: 886  RSSLMTQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEK 942

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRGKILI 1008
              LG  L+ H   +Y  E++ FIP  L+EL PT    +   +G++ ++     +  +I+ 
Sbjct: 943  DTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVVDI---ANFPNRIM- 998

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            I +DD +  VE+  N++ +++ K+I++  ++++V G++ E            K F +N  
Sbjct: 999  ITLDDGTARVEISCNHERFQRYKDIVRLEQVVVVEGEIYEREGYDRPMARLSKAFSLNDI 1058

Query: 1069 RILYGKKFSVMFNRTFNISILKK----ILLRFKCKNGLP--FVLYYCINKSIKY-EMKFP 1121
            R    +   V  +       L K    ILL + C   +     L   I +S  Y E+   
Sbjct: 1059 RQKRAQSIQVQLSPDLMTKSLAKDLQAILLPY-CNVDMSQHIGLQLQIEQSFAYAELHLG 1117

Query: 1122 LNYKVQPIDDLKLALINLGLYNAI-IEY 1148
              +KV P D+L   L +    +AI IEY
Sbjct: 1118 PQWKVAPQDELLAKLRDYFGKDAIFIEY 1145


>gi|68249339|ref|YP_248451.1| DNA polymerase III subunit alpha [Haemophilus influenzae 86-028NP]
 gi|68057538|gb|AAX87791.1| DNA polymerase III alpha subunit [Haemophilus influenzae 86-028NP]
          Length = 1159

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1157 (42%), Positives = 728/1157 (62%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G++ FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL+ L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFETE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQFKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|402758786|ref|ZP_10861042.1| DNA polymerase III subunit alpha [Acinetobacter sp. NCTC 7422]
          Length = 1187

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1158 (42%), Positives = 703/1158 (60%), Gaps = 60/1158 (5%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            +F+HL +H+E+SI + ++RI D+++AA  D  PALA+TDLSNL   +KFY++   KGIKP
Sbjct: 2    RFVHLGIHTEFSITESIVRIPDLVKAAVKDEMPALALTDLSNLHAAVKFYEACLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+L L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSVIRL-----NDAEHRATLLAMSSTGWLNLTEIVSRGFIEGQQLSIPCVQKEWILEQ 116

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               D LI L G H  D+G  + +     AE     W + F +  Y+ + R ++      I
Sbjct: 117  S--DDLIVLLGQH-SDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTERVGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            QQ + +A+   + +VA + + F+++ +F AHE R CIA+G +L + KR K ++ EQ FKT
Sbjct: 174  QQAVKLAAKYQIGVVAHNDVHFVEQDDFEAHEARVCIADGYVLGDDKRPKNYSTEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              +M +LF DIPSAI+NT +IAKRCN+ L+ G   LP FP P    I+ +    S+ GL+
Sbjct: 234  GEQMSELFSDIPSAIENTYQIAKRCNVALKLGTYFLPDFPIPDGYTIDTYFEHLSREGLE 293

Query: 304  KRLLNLY----KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            +RL +LY    +D +  +  K  Y +R+++E++ I+KM F GYFLIV DFIQWAKNN +P
Sbjct: 294  ERLNHLYPIAERDDDWAEIRK-PYDERIKYEVDIILKMGFPGYFLIVMDFIQWAKNNGVP 352

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI+Y
Sbjct: 353  VGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIEY 412

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   YG+ AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI
Sbjct: 413  VAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAI 471

Query: 480  KEEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
              EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ ++  +  
Sbjct: 472  DMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLC 531

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN 594
                T  ++QYDKDD+E  GL+KFDFLGL  L++++  +  I K     T  ++  +PL+
Sbjct: 532  DADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSETPLNIANVPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRR 654
            D+D Y +  +ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R
Sbjct: 592  DRDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHR 651

Query: 655  KHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
             HG  F Y  P  + VL  TYGIMVYQEQVMQ AQ   GY+LG ADLLRRA+GKKK  EM
Sbjct: 652  MHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEM 711

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
            ++ R+ F  GA K  + +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY +
Sbjct: 712  VKQRQIFIEGAAKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPA 771

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA LS  M +T+ I  L+ D  +   L +LPP++N+S Y+F    E     + I YG
Sbjct: 772  EFMAAVLSSEMQNTDSIVFLIDDC-RNNKLEVLPPSVNMSLYHFHASDE-----QTIVYG 825

Query: 835  LGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGAIKG G+  +++++  R   G + +LFDF  RID K IN+R + +LI +GA DC   +
Sbjct: 826  LGAIKGVGEQAMQSVIDSRINEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIE 885

Query: 894  RYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            R  L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK
Sbjct: 886  RSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEK 942

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRGKILI 1008
              LG  L+ H   +Y  E++ FIP  L+EL PT    +   +G++ ++     +  +I+ 
Sbjct: 943  DTLGLYLTGHPIDVYRPELKSFIPAKLNELTPTRRGVTTVFAGLVVDI---ANFPNRIM- 998

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            I +DD +  VE+  N++ +++ K+I++  +++++ G++ E            K F +N  
Sbjct: 999  ITLDDGTARVEISCNHERFQRYKDIVRLEQVVVIEGEIYEREGFDRPMARLSKAFSLNEI 1058

Query: 1069 RILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC-------INKSIKYEMKFP 1121
            R    +   V  ++      L K L           +L YC       I   I+ E  F 
Sbjct: 1059 RQKRAQSVQVRLSQDLMTKSLAKDL--------QAILLPYCNVDMCQHIALQIQLEQSFA 1110

Query: 1122 L-------NYKVQPIDDL 1132
                     +KV P+D+L
Sbjct: 1111 TAELHLGPQWKVAPLDEL 1128


>gi|260550635|ref|ZP_05824844.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624]
 gi|424055929|ref|ZP_17793450.1| DNA polymerase III, alpha subunit [Acinetobacter nosocomialis
            Ab22222]
 gi|425742568|ref|ZP_18860672.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-487]
 gi|260406346|gb|EEW99829.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624]
 gi|407438061|gb|EKF44607.1| DNA polymerase III, alpha subunit [Acinetobacter nosocomialis
            Ab22222]
 gi|425486394|gb|EKU52762.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-487]
          Length = 1186

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1164 (43%), Positives = 717/1164 (61%), Gaps = 40/1164 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D+++AA  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVKAAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSTIRL-----NDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +      I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTDRAGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ+FKT
Sbjct: 174  QEAAKLAAKYNIGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQHFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT  IAKRCN+ L+ G   LP++P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYHIAKRCNVSLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K N      +++ +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINK-NRGNDPLNISHVPLDD 591

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 592  PKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 651

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 652  HGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 711

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 712  KQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 771

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 772  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 825

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+ G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 826  GAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 885

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 886  SSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 942

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP  L+E+  T    V+ +   L L        ++IV+D
Sbjct: 943  TLGLYLTGHPIDVYRQELKAFIPAKLNEITATRR-GVTTVYAGLVLDVANFPNRVVIVLD 1001

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1002 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLNKAFSLNEIRQKR 1061

Query: 1073 GKKFSV-MFNRTFNISI---LKKILLRFKCKNGL--PFVLYYCINKS-IKYEMKFPLNYK 1125
                 + + N     S+   L+ ILL + C   +     ++  I++S  + E++    +K
Sbjct: 1062 ANSIQIKLTNDLMQPSLAKDLQNILLPY-CNVDMHQHIAIHLQIDQSYAQAELQLGPQWK 1120

Query: 1126 VQPIDDLKLALIN-LGLYNAIIEY 1148
            V P+D+L   L +  G  N  IEY
Sbjct: 1121 VAPLDELLAKLRDYFGKDNIHIEY 1144


>gi|343513812|ref|ZP_08750907.1| DNA polymerase III subunit alpha [Vibrio sp. N418]
 gi|342801431|gb|EGU36897.1| DNA polymerase III subunit alpha [Vibrio sp. N418]
          Length = 1159

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1161 (42%), Positives = 723/1161 (62%), Gaps = 48/1161 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL ++  +++  A    PA+A+TD +NL G++KFY +A+  GIK
Sbjct: 4    PKFIHLRVHSDYSMIDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGAAHGCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L ++  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFVMQSPEFGDELTKLTVIASDNTGYKNLTLLISKAYLRGHVQHQPVIDREWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG A+  G   +       + + F D FY+E+ R  + +    
Sbjct: 122  VELAEGLIILSGGKSGEIGKALLKGNQALVNQCVGFYQQHFADRFYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + FL++  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAERADLPVVATNEVVFLREDLFDAHEIRVAIHDGYTLEDPRRPKNYSSQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF D+P A++N++EIAKRCN+ +   +  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  SEEEMCELFADVPEALENSVEIAKRCNVTVRLWEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  +    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEAVRLARRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNEIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYAADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK-----TTNFSLNKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + ++ IN +          +  +PL D+ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIID---WALRLINPRLEREGKAPVRIESIPLADEA 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAVSYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            THY + FMAA ++  MD+T K+  LV + ++   L +LPP+IN   Y F   ++ DG   
Sbjct: 776  THYPAEFMAAVMTADMDNTEKVVGLVDECLR-MKLKVLPPDINSGLYRFN--VDEDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             I YG+GAIKG G+  IEAI+  R + G F +LFDF  RID K +N+R+I  LI +GA D
Sbjct: 830  AIVYGIGAIKGVGEGPIEAILASRNQDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+AS++ A+K A +  +     Q  LF        +    Y KVP W +K  
Sbjct: 890  RLGPHRAALMASLNDAVKAASQHHQAESFGQTDLFGVLTEAPEEVEHKYTKVPPWPEKVW 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYR 1003
            L  E+  LG  L+ H    Y  E+ ++    L++  PT    S T++G++   ++ TT R
Sbjct: 950  LEGERDTLGLYLTGHPINAYIKELGKYTSCRLNDATPTRRDQSVTIAGLVIAARVMTTKR 1009

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I ++ +DD S  +EV++ +   E+   +L+ +++L+VSG+V  D F   +++ A ++
Sbjct: 1010 GNRIGLMTLDDRSGRMEVMLFSDALERYAELLESDKILVVSGQVSFDDFNGGLKMTAREV 1069

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIKY 1116
             D+  AR  Y +  SV  +      I  +   RF           +P  +YY  + + + 
Sbjct: 1070 MDLGSAREKYARGLSVSISEA---QIDNQFFERFNTILEPYRAGTIPVHVYYQRSDA-RA 1125

Query: 1117 EMKFPLNYKVQP----IDDLK 1133
             +     ++V P    +DDLK
Sbjct: 1126 RLTLGTEWRVTPSDTLLDDLK 1146


>gi|319897758|ref|YP_004135955.1| DNA polymerase III subunit alpha [Haemophilus influenzae F3031]
 gi|317433264|emb|CBY81639.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3031]
          Length = 1159

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1157 (42%), Positives = 728/1157 (62%), Gaps = 33/1157 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG DV + + +   +   L LL KNN GY  +  LLSKAY    N     I  +WL  
Sbjct: 65   PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +++DG+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN    
Sbjct: 122  IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            IQ  + +A   +LP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q F+
Sbjct: 182  IQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ +M KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ KSK GL
Sbjct: 242  SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A + E
Sbjct: 421  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL     ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            + +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +++ 
Sbjct: 539  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDPESFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719  EMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  +I 
Sbjct: 779  PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEA+V  R + G F +LFD   R+D K INRR   SLI SGAFD   
Sbjct: 833  YGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L  +++ AL+ +++  K   + Q  +F      +      Y   P +++KQ L  
Sbjct: 893  PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +G +
Sbjct: 953  ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I  +DD S  +++ +  +  E+    L+++ +++ SG+V  D F   +++   ++  +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMTVRELMTL 1072

Query: 1066 NVARILYGKKFSVMFNR-TFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
            + AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++  +
Sbjct: 1073 DEARSRYVKSLAISLSEYQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131

Query: 1123 NYKVQPIDDLKLALINL 1139
             + + P D++   L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148


>gi|334143968|ref|YP_004537124.1| DNA polymerase III subunit alpha [Thioalkalimicrobium cyclicum ALM1]
 gi|333964879|gb|AEG31645.1| DNA polymerase III, alpha subunit [Thioalkalimicrobium cyclicum ALM1]
          Length = 1167

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1158 (41%), Positives = 717/1158 (61%), Gaps = 46/1158 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL LHSEYS+ D LL I  ++       QPALA+TD SN+F ++KFY +A ++GIKP+
Sbjct: 8    FVHLHLHSEYSVKDSLLHIKPLVAKVKGLGQPALALTDQSNMFALLKFYNAARSQGIKPL 67

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE----IRIEWL 120
            +G D+W+ +E E      + LL +N++GYL L +L+S+AY+ N    +A     +   WL
Sbjct: 68   LGADLWVHHEGEV---FSITLLCQNHSGYLNLSKLISQAYLTNQQVYQANQLPLVEQAWL 124

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
             +  +Q GLI L G H  +IG A+  G   +A+     W   F D  Y+E+ R ++P   
Sbjct: 125  AE--HQAGLIVLLGLH-SNIGQALARGNQALADQQQAWWQTHFADRVYLELVRTQRPGEE 181

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ + +A     P+VAT+ ++FL + +F AHE+R CI  G ++ +  R + +++EQ 
Sbjct: 182  AFIQQVLPLAQAWQWPVVATNDVRFLAREDFDAHEIRCCIHSGYVIEDPNRPRTYSEEQY 241

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+  EM  LF DIP AI NT  IA+RCNL L+ G   LP+FP P ++ ++++   +   
Sbjct: 242  LKSADEMQALFADIPQAITNTWLIAQRCNLSLDLGTYYLPEFPIPPDMTLDEYFRHECHK 301

Query: 301  GLKKRLLNLYKD--PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL  RL  L+ D   E +  ++  Y+ RL FE+ TI++M F GYFLIV+DFIQWAKNN I
Sbjct: 302  GLDARLAFLFGDLAAEDFNAKQQEYRDRLDFELNTILQMGFPGYFLIVADFIQWAKNNQI 361

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L+ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E RD VI 
Sbjct: 362  PVGPGRGSGAGSLVAYALNITDLDPIQYDLLFERFLNPERVSMPDFDVDFCMERRDEVID 421

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV   YG+D VSQI+T+GTMAAK  +RDVGRVL   Y   D ++KLIP + G  I L +A
Sbjct: 422  YVSRHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGMVDGVAKLIPNELG--IKLKDA 479

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E  L +R +++EEV+ L++ A ++EG +RNVG HAGGV+I P  L  +CPLY +   
Sbjct: 480  LEKEEDLKQRYRDDEEVKMLLDYALKLEGTVRNVGKHAGGVVIGPKPLDYYCPLYSEADG 539

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK--KINTKTTNFSLNKLPLNDK 596
             G+++Q DK+D+E IGL+KFDFLGL TL+I+D  +  I   K         +N++PL D 
Sbjct: 540  RGVVTQLDKNDVETIGLVKFDFLGLRTLTIIDWALQAINAGKQPDDEGFVDINRIPLADP 599

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
              + L+K   T  VFQLES GM+++++  +PD FE+IIAL++L+RPGP++  ++ NF  R
Sbjct: 600  KVFELIKTGKTTGVFQLESAGMQDLIRRLRPDCFEDIIALVALFRPGPLESGMVDNFIAR 659

Query: 655  KHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GK
Sbjct: 660  KHGKEAVSYPDAQYQHDSLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 719

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY +A+L
Sbjct: 720  KKPEEMAKERGKFEQGAIDNGVDGQLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQSAWL 779

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTHY + FMAA +S  MD+T+K+  ++ +      L++LPP+IN     F          
Sbjct: 780  KTHYPAHFMAAQISSDMDNTDKVVHMINECY-AMNLTLLPPDINRCAIRF-----QAADP 833

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
            + I YGLGAIKG G++ ++ ++ +R+  G F++LFDF  R  KK INRR++ +LI +GAF
Sbjct: 834  QTIIYGLGAIKGVGEAALDQVLADRQANGPFSDLFDFANRAGKK-INRRVLEALIRAGAF 892

Query: 888  DCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQ 945
            D  +  R  ++ S+ +AL  A++  T     Q  LF  +   ++        V    ++Q
Sbjct: 893  DSLHTNRQAMLESVAMALTQADQFLTNAQSGQSDLF-GELAADMAPPAQLAVVAEMPERQ 951

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT--YSCTVSGIITELKLKTTYR 1003
             L  EK  LG  L+ H    Y  E+  +  + L++L P       V+G++  ++ K T  
Sbjct: 952  RLQGEKDTLGLYLTGHPIEAYRQELADYARLSLAQLTPNKYEKRWVAGLVVAIRTKNTRS 1011

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G K+  I +DD +  +EV+    +++  ++ L+ +E++++ G V ED F   I+++AE++
Sbjct: 1012 GDKMAFITLDDRTARLEVVCRPAVFDAVRDWLRVDEVVLIKGAVSEDNFNGGIKLDAEQL 1071

Query: 1063 FDINVARILYGKKFSVMFN----RTFNISILKKILLRFKC---KNGLPFVL-YYCINKSI 1114
              +   R    +   +  +        I+ L+  LL +     + GLP VL  Y      
Sbjct: 1072 VTLAEMRAQEARAIKLYCDIDQLAESKIAALQDGLLPYWATPEQQGLPLVLECYQQVDGA 1131

Query: 1115 KYEMKFPLNYKVQPIDDL 1132
            +  M+      V+P D L
Sbjct: 1132 RVSMQLKSQEMVRPEDGL 1149


>gi|407070707|ref|ZP_11101545.1| DNA polymerase III subunit alpha [Vibrio cyclitrophicus ZF14]
          Length = 1159

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1151 (42%), Positives = 727/1151 (63%), Gaps = 34/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++  A    PALA+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L +L  +N GY  L  L+SKAY+      +  +  EWL  
Sbjct: 64   PIIGADFVMQSPEFGDELTKLTILATDNKGYNNLTLLISKAYLRGHVQHQPVLDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSGA  G+IG A+  G  ++  +    +   F D FY+E+ R  +P+    
Sbjct: 122  IEHAEGLIILSGAKDGEIGKALLKGNRELVASSVEFYKTYFADRFYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + FL +  F AHE+R  I +G  + + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQEDLPVVATNEVVFLTEDLFDAHEIRVAIHDGFTMVDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFLI KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGLAIEDFLIKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D +I    +  Y +RL+ E+E +  M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  ERRLEFLFPDEKIRAERRPEYDERLKIELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFLAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLAKEGKDPVRIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++ DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVIGLVDECFR-MKLKLLPPDINSGLYRFN--VDEDG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  R+D K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKLILSGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+  A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVPKWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L +  PT    S T++G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++   +L+++++++VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYAELLEKDKIVVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKK---ILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
              AR  Y +  S+  +++  N    ++   IL  ++    +P  +YY      +  +   
Sbjct: 1073 GSAREKYARGVSISIDQSQINGQFFERFGQILEPYRAGT-VPVNVYYQ-RADARARLTLG 1130

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1131 TEWRVTPSDTL 1141


>gi|167856189|ref|ZP_02478926.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755]
 gi|167852678|gb|EDS23955.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755]
          Length = 1158

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1096 (43%), Positives = 706/1096 (64%), Gaps = 35/1096 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+I+GL ++  +I+A   +   A+A+TD +N  G+++FY  A   G+K
Sbjct: 4    PRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI---EW 119
            PI+G DV +  E E+++   L LL KNN GY  +  LLSKAY +    G  E  +    W
Sbjct: 64   PIVGADVMVRPEPESEELYELTLLAKNNTGYHNITLLLSKAYQQ----GYVEFPVVEKAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +  + DG+I LSG   GD+G A+       AE     + + F +++Y+ + R  + + 
Sbjct: 120  LAE--HNDGVILLSGGRNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSLCRTGRSDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               IQQ +  +    +P+VA + + FLK+ +F AHE+R  I +   L + KR +K++++Q
Sbjct: 178  EHYIQQAVTFSQKFAIPLVAVNDVMFLKQDDFEAHEIRVAIHDSFTLDDPKRPQKYSEQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM +LF D+P AI+NT+ IA+RCN+ +  G+  LP FPT   ++  DFL+ K+K
Sbjct: 238  YFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPT-GELSTEDFLVKKAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ DP++   ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL+ A 
Sbjct: 417  VSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY      
Sbjct: 475  EAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYFDSYGL 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +   K       +  +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPLVRIESIPLDDEK 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
             + LLK A T AVFQLES+GMK+++   +P  FE+IIAL++L+RPGP++  +++NF  RK
Sbjct: 595  AFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLESGMVQNFIDRK 654

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E   YPD +      + +L  TYGI+VYQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM   R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            THY + FMAA ++  MD+T+KI     + I   GL+++PP+IN  K+ F     S  +  
Sbjct: 775  THYPAEFMAAVMTSEMDNTDKIVGFYDECI-NMGLTVVPPDINSGKHRF-----SVNEKG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  I+A++  R K G F +LFD T R+D + +NRR    LI +GAFD
Sbjct: 829  EIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIMAGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ +++ AL+ +++  K   + Q  +F        +    Y   P W+++  
Sbjct: 889  KLGPHRAALMKNLEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKWTEQTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYR 1003
            L  EK  LG  LS H    +  E+  + P  L+E++PTY   + TV+G+I   ++ TT +
Sbjct: 949  LDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARIATTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I I  I+D S  +++ + ++  E   ++L++++++I +G V  D F   +++   ++
Sbjct: 1009 GSRIGIATIEDRSGKMDLTLFSEALENYGDLLQKDQIIIATGAVQHDDFSGGLKMAVREM 1068

Query: 1063 FDINVARILYGKKFSV 1078
              ++ AR  Y +  ++
Sbjct: 1069 ITLDEARSRYARSLAL 1084


>gi|84389777|ref|ZP_00991329.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01]
 gi|84376878|gb|EAP93752.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01]
          Length = 1159

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1151 (42%), Positives = 727/1151 (63%), Gaps = 34/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++  A    PALA+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L ++  NN GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFLMQSPDFGDELTKLTVIATNNKGYNNLTLLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSGA  G+IG A+  G  ++  +    +   F D FY+E+ R  +P+    
Sbjct: 122  IEHAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLELIRTGRPDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + F+ +  F AHE+R  I +G  + + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDPRRPKNYSSQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFLI KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGLAIEDFLIKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RL+ E+E +  M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  ERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFLAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKEPVRIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++ DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVIGLVDECFR-MKLKLLPPDINSGLYRFN--VDEDG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  R+D K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKLILSGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+  A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVPKWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L +  PT    S T++G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++   +L+++++++VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYAELLEKDKIVVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKK---ILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
              AR  Y +  S+  +++  N    ++   IL  ++    +P  +YY      +  +   
Sbjct: 1073 GSAREKYARGVSISIDQSQINGQFFERFSQILEPYRAGT-VPVNVYYQ-RADARARLTLG 1130

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1131 TEWRVTPSDTL 1141


>gi|425751796|ref|ZP_18869738.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-113]
 gi|425499803|gb|EKU65834.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-113]
          Length = 1187

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1171 (42%), Positives = 715/1171 (61%), Gaps = 53/1171 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D+++ A  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSTIRL-----NDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ FKT
Sbjct: 174  QEAAKLAAKYNVGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT +IAKRCN+ L+ G   LP++P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  +SQYDKDD+E  GL+KFDFLGL  L++++  I  I K        +++ +PL+D
Sbjct: 533  ADGTNRVSQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  PKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+ G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  SSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP  L+E+  T    V+ +   L L        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPAKLNEITATRR-GVTTVYAGLVLDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLNKAFSLNEIR--- 1059

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC---INKSI-----------KYEM 1118
             +K +     +  I +   +L     K+    +L YC   +++ I           + E+
Sbjct: 1060 -QKRA----NSIQIKLTHDLLQPSLAKDLQNILLPYCNVDMHQHIAIQLQIDQPYAQAEL 1114

Query: 1119 KFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +    +KV P+D+L   L +  G  N  IEY
Sbjct: 1115 QLGPQWKVAPLDELLAKLRDYFGKDNIHIEY 1145


>gi|417842198|ref|ZP_12488292.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M19501]
 gi|341947413|gb|EGT74062.1| DNA polymerase III subunit alpha [Haemophilus haemolyticus M19501]
          Length = 1159

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1160 (41%), Positives = 733/1160 (63%), Gaps = 39/1160 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR H+++S+ID ++++  +++A A +   A+ +TD +N  G+++FY    + G+K
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMIAMGLTDFTNFCGVVRFYGEMLSSGMK 64

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D+ + + +   +   L LL KNN GY  +  LLSKAY    N       + ++++
Sbjct: 65   PIIGADIKVKSPLCGDEYFDLTLLAKNNEGYKNITLLLSKAYQRGYN------DLPYIDQ 118

Query: 123  N---KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            N   ++++G+I LSG   GD+G  +        E+    + + F D+FY+ + R  +PN 
Sbjct: 119  NWLIEHREGVIILSGGTQGDVGKKLLKENIAEIESAVAFYQEFFADHFYLALSRTGRPNE 178

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               IQ  + +A   NLP+VAT+ + FL   +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 179  ERYIQAALKLAERCNLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKHYTSQQ 238

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM KLF DIPSA++NT+ IA+RC++ L  G+  LP+FPT  +++  DFL+ K+K
Sbjct: 239  YFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKAK 297

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++   ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 298  EGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 357

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEH 417

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct: 418  VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 475

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EPQL     ++EEV+ LI++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 476  EAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGL 535

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I  + +        +  +PL+D +
Sbjct: 536  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMVREGKPRVDIAAIPLDDPE 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LLK++ T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 656  HGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            TH+ + FMAA ++  MD+T+KI  L  + ++  GL + PP+IN+ K++F     S  +  
Sbjct: 776  THFPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQG 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I+A+VT R + G F +LFD   R+D K INRR   SLI SGAFD
Sbjct: 830  EIVYGIGAIKGVGEGPIDALVTARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q  +F      +      Y   P +++KQ 
Sbjct: 890  KLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQI 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  +    L +L P       TV+G++   ++  T +
Sbjct: 950  LDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKK 1009

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G ++ I  +DD S  +++ +  +  E+  + L+++ +++ SG+V  D F   +++   ++
Sbjct: 1010 GNRLGIATLDDRSGRLDLTLFGESLEQFGDKLQKDTVVVASGQVSFDDFSGGLKMAVREL 1069

Query: 1063 FDINVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
              ++ AR  Y K  ++  +      S +K  K LL       LP  +YY   K  +  ++
Sbjct: 1070 MTLDEARSRYVKSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKG-RALLR 1128

Query: 1120 FPLNYKVQPIDDLKLALINL 1139
              + + + P D++   L+NL
Sbjct: 1129 LGVQWSIIPTDEILTELVNL 1148


>gi|350562808|ref|ZP_08931631.1| DNA polymerase III, alpha subunit [Thioalkalimicrobium aerophilum
            AL3]
 gi|349779674|gb|EGZ34015.1| DNA polymerase III, alpha subunit [Thioalkalimicrobium aerophilum
            AL3]
          Length = 1168

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1164 (41%), Positives = 724/1164 (62%), Gaps = 47/1164 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL LHSE+S+ D LL I  ++     + QPALA+TD SN+F ++KFY +A ++GIKPI
Sbjct: 8    FVHLHLHSEFSVRDSLLHIKPLMAKVKEEGQPALALTDQSNMFALLKFYSAARSQGIKPI 67

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE----IRIEWL 120
            +G D+W+ +   + +   + LL ++  GYL L +L+SKAY+ N    +A     +   WL
Sbjct: 68   LGADLWVHH---DGQVFSITLLCQDATGYLNLSKLISKAYLTNQQVYQANQLPLVEQAWL 124

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
              +++Q GLI L G H  +IG A+      +A+     W   F +  Y+E+ R ++P   
Sbjct: 125  --SEHQAGLIVLLGLH-SNIGQALSKDNKTLAKEQQAWWQAHFANRVYLELVRTQRPGEE 181

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              IQQ + +A     P+VAT+ ++FL + +F AHE+R CI  G ++ +  R + +++EQ 
Sbjct: 182  AFIQQVLPLAQTWQWPVVATNDVRFLARDDFDAHEIRCCIHSGYVIEDPNRPRTYSEEQY 241

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             K+ +EM  LF DIP AI NT+ IA+RCN  L  G   LP+FP P  + ++ F   +   
Sbjct: 242  LKSSAEMEALFADIPQAITNTLLIAQRCNFSLALGTYYLPEFPIPPELTLDQFFRQECHQ 301

Query: 301  GLKKRLLNLYKD--PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            GL  RL  L+     + +  ++  Y++RL FE+ TI++M F GYFLIV+DFIQWAKN+ I
Sbjct: 302  GLDARLEFLFGHLAADEFNAKQQEYRERLDFELNTILQMGFPGYFLIVADFIQWAKNHQI 361

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAYSL ITD+DP+ Y+LLFERFLNP R+SMPDFD+DFC E RD VI 
Sbjct: 362  PVGPGRGSGAGSLVAYSLKITDLDPIQYDLLFERFLNPERVSMPDFDVDFCMERRDEVID 421

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            YV   YG+D VSQI+T+GTMAAK  +RDVGRVL   Y   D ++KLIP + G  I L +A
Sbjct: 422  YVSRHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGMVDGVAKLIPNELG--IKLKDA 479

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
            +++E  L +R +++EEV+ L++ A ++EG +RNVG HAGGV+I P  L  FCPLY +   
Sbjct: 480  LEKEEDLQQRYRDDEEVKTLLDYALKLEGTVRNVGKHAGGVVIGPRPLDTFCPLYSEADG 539

Query: 539  TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDK 596
             G+++Q DK+D+E IGL+KFDFLGL TL+I+D  +  I        +    +N++PL+D 
Sbjct: 540  RGVVTQLDKNDVETIGLVKFDFLGLRTLTIIDWALQAINAGKQPDDDGFVDINRIPLDDP 599

Query: 597  DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
              + L+K   T  VFQLES GM+++++  +PD FE+IIAL++L+RPGP++  ++ NF  R
Sbjct: 600  KVFELIKTGKTTGVFQLESAGMQDLIRRLRPDCFEDIIALVALFRPGPLESGMVDNFIAR 659

Query: 655  KHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
            KHG E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GK
Sbjct: 660  KHGKEAVSYPDAQYQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 719

Query: 709  KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
            KK  EM + R  F+ GAI  G+  H A +IF+ +EKFAGYGFNKSH+ AYAL+SY +A+L
Sbjct: 720  KKPEEMAKERGKFEQGAIDNGVDGHLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQSAWL 779

Query: 769  KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
            KTH+ + FMAA +S  MD+T+K+  ++ +      L++LPP+IN     F          
Sbjct: 780  KTHFPAHFMAAQISSDMDNTDKVVHMINECY-AMNLTLLPPDINRCAIRF-----QAADA 833

Query: 829  KKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAF 887
            + I YGLGAIKG G++ ++ ++ +R+  G F++LFDF  R  KK INRR++ +LI +GAF
Sbjct: 834  QTIIYGLGAIKGVGEAALDQVLADRQANGPFSDLFDFANRAGKK-INRRVLEALIRAGAF 892

Query: 888  DCFNEKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQ 945
            D  ++ R+ ++ S+ +AL  A++        Q  LF  D +  L    + V+V    ++Q
Sbjct: 893  DRLHDNRHAMLESVTMALTQADQFLANAQSGQSDLF-GDADLALAPPASLVQVAEMPERQ 951

Query: 946  ELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT--YSCTVSGIITELKLKTTYR 1003
            +L  EK  LG  L+ H    Y  E+  +  + L++L P       V+G++  ++ K T  
Sbjct: 952  KLQGEKDTLGLYLTGHPIEAYRQELADYARLTLAQLTPNKYEKRWVAGLVVAIRTKNTRS 1011

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G K+  I +DD +  +EV+    +++  ++ L  +E++++ G V ED F   I+++AE++
Sbjct: 1012 GDKMAFITLDDRTARLEVVCRPAVFDAVRDWLSIDEVVLIKGAVTEDSFNGGIKLDAEQL 1071

Query: 1063 FDINVARILYGKKFSVMFN----RTFNISILKKILLRFKC---KNGLPFVL-YYCINKSI 1114
              +   R    +   +  +        ++ L   LL +     + GLP V+  Y  +   
Sbjct: 1072 VTLAEMRAQEARAIKLYCDVAQLNEAKVAALADQLLPYWAQPDQQGLPLVVECYQQHDHA 1131

Query: 1115 KYEMKFPLNYKVQPIDDLKLALIN 1138
            +  M+   N  V+P DD  L L++
Sbjct: 1132 RVSMQLKSNGLVRP-DDALLELLH 1154


>gi|343509214|ref|ZP_08746499.1| DNA polymerase III subunit alpha [Vibrio scophthalmi LMG 19158]
 gi|342805281|gb|EGU40557.1| DNA polymerase III subunit alpha [Vibrio scophthalmi LMG 19158]
          Length = 1159

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1161 (42%), Positives = 723/1161 (62%), Gaps = 48/1161 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL ++  +++  A    PA+A+TD +NL G++KFY +A+  GIK
Sbjct: 4    PKFIHLRVHSDYSMIDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGAAHGCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L ++  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFVMQSPEFGDELTKLTVIASDNTGYKNLTLLISKAYLRGHVQHQPVIDREWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG A+  G   +       + + F D FY+E+ R  + +    
Sbjct: 122  VELAEGLIILSGGKSGEIGKALLKGNQALVNQCVGFYQQYFADRFYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + FL++  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALELAERADLPVVATNEVVFLREDLFDAHEIRVAIHDGYTLEDPRRPKNYSSQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +   +  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  +    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEAVRLARRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNEIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEV++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYAADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK-----TTNFSLNKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + ++ IN +          +  +PL D+ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIID---WALRLINPRLEREGKAPVRIESIPLVDEA 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LL+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAVSYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            THY + FMAA ++  MD+T K+  LV + ++   L +LPP+IN   Y F   ++ DG   
Sbjct: 776  THYPAEFMAAVMTADMDNTEKVVGLVDECLR-MKLKVLPPDINSGLYRFN--VDEDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             I YG+GAIKG G+  IEAI+  R + G F +LFDF  RID K +N+R+I  LI +GA D
Sbjct: 830  AIVYGIGAIKGVGEGPIEAILASRNQDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+AS++ A+K A +  +     Q  LF        +    Y KVP W +K  
Sbjct: 890  RLGPHRAALMASLNDAVKAASQHHQAESFGQTDLFGVLTEAPEEVEHKYTKVPPWPEKVW 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYR 1003
            L  E+  LG  L+ H    Y  E+ ++    L++  PT    S T++G++   ++ TT R
Sbjct: 950  LEGERDTLGLYLTGHPINAYIKELGKYTSCRLNDATPTRRDQSVTIAGLVIAARVMTTKR 1009

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I ++ +DD S  +EV++ +   E+   +L+ +++L+VSG+V  D F   +++ A ++
Sbjct: 1010 GNRIGLMTLDDRSGRMEVMLFSDALERYAELLESDKILVVSGQVSFDDFNGGLKMTAREV 1069

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIKY 1116
             D+  AR  Y +  SV  +      I  +   RF           +P  +YY  + + + 
Sbjct: 1070 MDLGSAREKYARGLSVSISEA---QIDNQFFERFNTILEPYRAGTIPVHVYYQRSDA-RA 1125

Query: 1117 EMKFPLNYKVQP----IDDLK 1133
             +     ++V P    +DDLK
Sbjct: 1126 RLTLGTEWRVTPSDTLLDDLK 1146


>gi|169796248|ref|YP_001714041.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AYE]
 gi|184157823|ref|YP_001846162.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ACICU]
 gi|213157018|ref|YP_002319063.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057]
 gi|215483703|ref|YP_002325924.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294]
 gi|301347827|ref|ZP_07228568.1| DNA polymerase III DnaE [Acinetobacter baumannii AB056]
 gi|301511111|ref|ZP_07236348.1| DNA polymerase III DnaE [Acinetobacter baumannii AB058]
 gi|301595112|ref|ZP_07240120.1| DNA polymerase III DnaE [Acinetobacter baumannii AB059]
 gi|332855454|ref|ZP_08435874.1| DNA polymerase III subunit alpha [Acinetobacter baumannii 6013150]
 gi|332866042|ref|ZP_08436786.1| DNA polymerase III subunit alpha [Acinetobacter baumannii 6013113]
 gi|332874634|ref|ZP_08442525.1| DNA polymerase III subunit alpha [Acinetobacter baumannii 6014059]
 gi|384131918|ref|YP_005514530.1| DNA polymerase III subunit alpha [Acinetobacter baumannii 1656-2]
 gi|384142910|ref|YP_005525620.1| DNA polymerase III subunit alpha [Acinetobacter baumannii MDR-ZJ06]
 gi|387124219|ref|YP_006290101.1| DNA-directed DNA polymerase III PolC [Acinetobacter baumannii MDR-TJ]
 gi|416145983|ref|ZP_11600833.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii AB210]
 gi|417568137|ref|ZP_12219000.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC189]
 gi|417573057|ref|ZP_12223911.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Canada
            BC-5]
 gi|417579337|ref|ZP_12230170.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-17]
 gi|417869744|ref|ZP_12514724.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ABNIH1]
 gi|417873205|ref|ZP_12518081.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ABNIH2]
 gi|417878656|ref|ZP_12523263.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ABNIH3]
 gi|417883231|ref|ZP_12527485.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ABNIH4]
 gi|421204519|ref|ZP_15661640.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AC12]
 gi|421536447|ref|ZP_15982693.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AC30]
 gi|421622084|ref|ZP_16062994.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC074]
 gi|421645005|ref|ZP_16085479.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-235]
 gi|421648527|ref|ZP_16088930.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-251]
 gi|421652767|ref|ZP_16093115.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC0162]
 gi|421658907|ref|ZP_16099135.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-83]
 gi|421699580|ref|ZP_16139104.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-58]
 gi|421703348|ref|ZP_16142812.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ZWS1122]
 gi|421707071|ref|ZP_16146471.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ZWS1219]
 gi|421791125|ref|ZP_16227309.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-2]
 gi|421798445|ref|ZP_16234467.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-21]
 gi|421798588|ref|ZP_16234605.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Canada
            BC1]
 gi|424064133|ref|ZP_17801618.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Ab44444]
 gi|425748804|ref|ZP_18866786.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-348]
 gi|445458757|ref|ZP_21447297.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC047]
 gi|445469665|ref|ZP_21451322.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC338]
 gi|445475556|ref|ZP_21453446.1| PHP domain / DNA polymerase III, alpha subunit / nucleic acid-binding
            domain multi-domain protein [Acinetobacter baumannii
            Naval-78]
 gi|169149175|emb|CAM87054.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE]
 gi|183209417|gb|ACC56815.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii ACICU]
 gi|213056178|gb|ACJ41080.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057]
 gi|213988216|gb|ACJ58515.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294]
 gi|322508138|gb|ADX03592.1| DNA polymerase III, alpha chain [Acinetobacter baumannii 1656-2]
 gi|332727428|gb|EGJ58858.1| DNA polymerase III subunit alpha [Acinetobacter baumannii 6013150]
 gi|332734862|gb|EGJ65953.1| DNA polymerase III subunit alpha [Acinetobacter baumannii 6013113]
 gi|332737163|gb|EGJ68099.1| DNA polymerase III subunit alpha [Acinetobacter baumannii 6014059]
 gi|333366542|gb|EGK48556.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii AB210]
 gi|342229616|gb|EGT94475.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ABNIH1]
 gi|342231912|gb|EGT96704.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ABNIH2]
 gi|342232143|gb|EGT96927.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ABNIH3]
 gi|342236128|gb|EGU00670.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ABNIH4]
 gi|347593403|gb|AEP06124.1| DNA polymerase III, alpha chain [Acinetobacter baumannii MDR-ZJ06]
 gi|385878711|gb|AFI95806.1| DNA-directed DNA polymerase III PolC [Acinetobacter baumannii MDR-TJ]
 gi|395554432|gb|EJG20434.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC189]
 gi|395568475|gb|EJG29149.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-17]
 gi|398325922|gb|EJN42079.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AC12]
 gi|400208625|gb|EJO39595.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Canada
            BC-5]
 gi|404571281|gb|EKA76341.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-58]
 gi|404673514|gb|EKB41300.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Ab44444]
 gi|407192359|gb|EKE63539.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ZWS1122]
 gi|407192760|gb|EKE63935.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ZWS1219]
 gi|408504019|gb|EKK05771.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-235]
 gi|408504184|gb|EKK05935.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC0162]
 gi|408515361|gb|EKK16949.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-251]
 gi|408696598|gb|EKL42131.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC074]
 gi|408709145|gb|EKL54401.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-83]
 gi|409985698|gb|EKO41905.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AC30]
 gi|410394309|gb|EKP46645.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-21]
 gi|410403621|gb|EKP55704.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-2]
 gi|410412579|gb|EKP64436.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Canada
            BC1]
 gi|425489785|gb|EKU56086.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-348]
 gi|444774327|gb|ELW98415.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC338]
 gi|444775166|gb|ELW99236.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC047]
 gi|444778895|gb|ELX02895.1| PHP domain / DNA polymerase III, alpha subunit / nucleic acid-binding
            domain multi-domain protein [Acinetobacter baumannii
            Naval-78]
          Length = 1187

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1171 (42%), Positives = 715/1171 (61%), Gaps = 53/1171 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D+++ A  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSTIRL-----NDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ FKT
Sbjct: 174  QEAAKLAAKYNVGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT +IAKRCN+ L+ G   LP++P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K        +++ +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  PKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+ G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  SSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP  L+E+  T    V+ +   L L        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPAKLNEITATRR-GVTTVYAGLVLDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLNKAFSLNEIR--- 1059

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC---INKSI-----------KYEM 1118
             +K +     +  I +   +L     K+    +L YC   +++ I           + E+
Sbjct: 1060 -QKRA----NSIQIKLTHDLLQPSLAKDLQNILLPYCNVDMHQHIAIQLQIDQPYAQAEL 1114

Query: 1119 KFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +    +KV P+D+L   L +  G  N  IEY
Sbjct: 1115 QLGPQWKVAPLDELLAKLRDYFGKDNIHIEY 1145


>gi|197334671|ref|YP_002156775.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11]
 gi|197316161|gb|ACH65608.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11]
          Length = 1159

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1150 (42%), Positives = 726/1150 (63%), Gaps = 32/1150 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++       PA+A+TD +NL G++K+Y +A+  GIK
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKNVGELGMPAMALTDFTNLCGLVKYYFAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++    +   L +L K+N GY  L  L+S+AY          +  EWL  
Sbjct: 64   PIIGADFKVQSQEFGNELFNLTVLAKDNEGYKNLTLLISEAYQRGHVQHTPVMDKEWLVN 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG   GD+G A+  G  ++       +   FP+++Y+E+ R  + +    
Sbjct: 124  HK--EGLILLSGGKSGDVGKALLKGNKELVNECVEFYQTHFPEHYYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   NLP+VAT+ ++F+K  +F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRRPKLYSDQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMKIEDFLVKKSQEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  ERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPSDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++ + +EG  RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPLYCDADGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEKEGKDPVRIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV +  +   L++LPP++N S  Y F + E       I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIIGLVDECFR-MKLTVLPPDVN-SGLYRFNVDEKGA----IV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IE I+  R K G F +LFDF  RID K  N+R++  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIENIIEARNKGGHFKDLFDFCARIDTKKTNKRVVEKLIRAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS+D A+K A +  +     Q  +F        +    Y+ VP W +K  L  
Sbjct: 893  PHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPKWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L++   T    + TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++  ++L+ +++++VSG+V  D F   ++++A ++  +
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYADLLETDKIVLVSGQVSFDDFNGGLKMSAREVMSL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV    +  N    ++   +L       +P  +YY      + ++    
Sbjct: 1073 GDAREKYARGLSVSVTESQINNQFFERFSQILEPNRAGTVPVNVYYQ-RADARVKLVLGT 1131

Query: 1123 NYKVQPIDDL 1132
             ++V P D L
Sbjct: 1132 EWRVTPTDQL 1141


>gi|33151745|ref|NP_873098.1| DNA polymerase III subunit alpha [Haemophilus ducreyi 35000HP]
 gi|33147966|gb|AAP95487.1| DNA polymerase III alpha subunit [Haemophilus ducreyi 35000HP]
          Length = 1158

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1161 (42%), Positives = 730/1161 (62%), Gaps = 43/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+I+GL ++  +++ AA     A+A+TD SN  G++KFY  +   G+K
Sbjct: 4    PRFVHLKVHSDFSMINGLAKVKALVKTAAAKQMAAMALTDFSNFCGLVKFYGESLTAGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI---EW 119
            PIIG D+++ ++  ++    L LL KNN GY  +  LLS+AY      G  E  I    W
Sbjct: 64   PIIGADIYVRSDPTSEDIFELTLLAKNNQGYHNITVLLSRAY----QQGYVEFPIVEKAW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +    +G+I LSG   GD+G A+       A      + + F D++Y+ + R  + + 
Sbjct: 120  LAE--LNEGIIVLSGGRSGDVGKALLKENEQEAATLVAFYQQYFADHYYLSLCRTGRSDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               +QQ +  A    LP+VA + + FLK+ +F AHE+R  I +   L + KR +K++ +Q
Sbjct: 178  ERYLQQAVQFAKKYQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPQKYSPQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+P A+ N+I+IA RCN+ +  G+  LP FPT   ++  DFLI KS+
Sbjct: 238  YFRSEEEMCALFADLPQALMNSIQIAMRCNVTIRLGEYFLPNFPT-GELSTEDFLIKKSQ 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D E  K ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  EGLEERLAFLFPDAETRKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP RISMPDFD+DFC +GRD VI++
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERISMPDFDVDFCMDGRDHVIEH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V D YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y+F D ISKLIP  PG  +TL+ A 
Sbjct: 417  VADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPADPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY      
Sbjct: 475  EAEPKLPELYNADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGL 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I +  T+       +  +PL+DK 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLTREGKPPIRIENIPLDDKP 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ LL  A T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RK
Sbjct: 595  SFKLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRK 654

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K +L  TYGI+VYQEQVMQIAQ L GY+LG ADLLRRA+GKK
Sbjct: 655  HGIEEVSYPDAQYQHECLKPILEPTYGIIVYQEQVMQIAQELAGYTLGSADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM   R  F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAAQRDIFEKGAIEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + I   GL+++PP++N  K+ F     S  +  
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECI-NMGLTVVPPDVNSGKHRF-----SVNEKG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YGLGAIKG G+  IEAI+  R K G F +LFD T R+D K INRR   SLI SGAFD
Sbjct: 829  QIVYGLGAIKGVGEGPIEAILEARNKGGIFKDLFDLTARVDLKKINRRTFESLIMSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+ +++ ALK +++  K   + Q  +F        +    Y   P WS++  
Sbjct: 889  KLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEQVQKAYANTPKWSEQAV 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E+  LG  LS H    +  E+  + P  L+EL+PT      TV+GII   ++  T R
Sbjct: 949  LEGERTTLGLYLSGHPIGRFLKELAHYAPTRLNELQPTRRGQMVTVAGIIVASRIAVTKR 1008

Query: 1004 GKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  L I  ++D +  +++ + ++  E   ++L ++ ++I +G V  D F   ++++  +I
Sbjct: 1009 GSRLGIATLEDRAGKIDITLFSEALENYGDLLVKDNIIIATGSVQSDDFNGGLKMSVREI 1068

Query: 1063 FDINVARILYGKKFSVMFNRT----FNISILKKILLRFKCKNGLPFVLYYCINKSIKYEM 1118
             +++  R  Y K  ++  ++       +  L++I+  +K +  LP   YY   +  +  +
Sbjct: 1069 ANLDEIRSRYAKSLALAISQQQLTPQFVKALREIIEPYK-EGTLPLHFYYQSPEG-RALL 1126

Query: 1119 KFPLNYKVQPIDDL--KLALI 1137
            +  + ++V P D++  KLA++
Sbjct: 1127 RGGVEWRVTPKDEMLDKLAVL 1147


>gi|262278808|ref|ZP_06056593.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
 gi|262259159|gb|EEY77892.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
          Length = 1187

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1167 (42%), Positives = 707/1167 (60%), Gaps = 45/1167 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D++ AA  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            ++G  + +     +    R+ LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   LLGSIIRL-----DDAQHRVTLLAMSDIGWKSLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     A      W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ+FKT
Sbjct: 174  QEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRTYSPEQHFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT  IAKRCN+KL+ G   LP +P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTIDTYFEHLSKVGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWLEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI 
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAID 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EG+ RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K        ++  +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDQLNILNVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  AKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA ++  M +T+ +  L+ D  +   + +LPP++N+S Y+F          K I YGL
Sbjct: 773  FMAAVMTSEMQNTDSVVFLIDDC-RNNNIDVLPPSVNMSTYHFHA-----SNDKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R++G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQYGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  ASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP+ L+E+  T    V+ +   L +        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPVKLNEITATRR-GVTTVYAGLVIDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +   EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARFEVSCNHERFQRFKDIVQVERVVVFEGEIYEREGFDRPMGRLTKAFTLNEIRQKR 1062

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPF---------VLYYCINKS-IKYEMKFPL 1122
                 +     F    L K L +      LPF          L   I++   + E++F  
Sbjct: 1063 ANSIQIKLTEEFMQPTLAKDLQKMI----LPFCNVDMHQHIALQLQIDQPYAQAELQFGP 1118

Query: 1123 NYKVQPIDDLKLALIN-LGLYNAIIEY 1148
             +KV P+D+L   L +  G  N  IEY
Sbjct: 1119 QWKVAPLDELLAKLRDYFGKDNIYIEY 1145


>gi|239504052|ref|ZP_04663362.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB900]
 gi|421678670|ref|ZP_16118554.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC111]
 gi|410392233|gb|EKP44595.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC111]
          Length = 1187

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1171 (42%), Positives = 715/1171 (61%), Gaps = 53/1171 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D+++ A  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSTIRL-----NDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ FKT
Sbjct: 174  QEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT +IAKRCN+ L+ G   LP++P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K        +++ +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  PKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLDVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+ G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  SSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP  L+E+  T    V+ +   L L        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPAKLNEITATRR-GVTTVYAGLVLDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLNKAFSLNEIR--- 1059

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC---INKSI-----------KYEM 1118
             +K +     +  I +   +L     K+    +L YC   +++ I           + E+
Sbjct: 1060 -QKRA----NSIQIKLTHDLLQPSLAKDLQNILLPYCNVDMHQHIAIQLQIDQPYAQAEL 1114

Query: 1119 KFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +    +KV P+D+L   L +  G  N  IEY
Sbjct: 1115 QLGPQWKVAPLDELLAKLRDYFGKDNIHIEY 1145


>gi|445488590|ref|ZP_21458199.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii AA-014]
 gi|444767426|gb|ELW91673.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii AA-014]
          Length = 1187

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1171 (42%), Positives = 715/1171 (61%), Gaps = 53/1171 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D+++ A  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSTIRL-----NDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ FKT
Sbjct: 174  QEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT +IAKRCN+ L+ G   LP++P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K        +++ +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  PKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+ G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  SSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP  L+E+  T    V+ +   L L        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPAKLNEITATRR-GVTTVYAGLVLDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLNKAFSLNEIR--- 1059

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC---INKSI-----------KYEM 1118
             +K +     +  I +   +L     K+    +L YC   +++ I           + E+
Sbjct: 1060 -QKRA----NSIQIKLTHDLLQPSLAKDLQNILLPYCNVDMHQHIAIQLQIDQPYAQAEL 1114

Query: 1119 KFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +    +KV P+D+L   L +  G  N  IEY
Sbjct: 1115 QLGPQWKVAPLDELLAKLKDYFGKDNIHIEY 1145


>gi|260555310|ref|ZP_05827531.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606
            = CIP 70.34]
 gi|417545359|ref|ZP_12196445.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC032]
 gi|417552791|ref|ZP_12203861.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-81]
 gi|417561187|ref|ZP_12212066.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC137]
 gi|417564093|ref|ZP_12214967.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC143]
 gi|421197934|ref|ZP_15655103.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC109]
 gi|421456086|ref|ZP_15905429.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-123]
 gi|421624860|ref|ZP_16065724.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC098]
 gi|421632759|ref|ZP_16073404.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-13]
 gi|421653602|ref|ZP_16093935.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-72]
 gi|421661845|ref|ZP_16102015.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC110]
 gi|421668737|ref|ZP_16108770.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC087]
 gi|421669969|ref|ZP_16109980.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC099]
 gi|421676612|ref|ZP_16116519.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC065]
 gi|421691149|ref|ZP_16130813.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-116]
 gi|421697021|ref|ZP_16136600.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-692]
 gi|421804917|ref|ZP_16240813.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-A-694]
 gi|421809143|ref|ZP_16244983.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC035]
 gi|424052653|ref|ZP_17790185.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Ab11111]
 gi|424060186|ref|ZP_17797677.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Ab33333]
 gi|445406493|ref|ZP_21431770.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-57]
 gi|193077117|gb|ABO11893.2| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978]
 gi|260411852|gb|EEX05149.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606
            = CIP 70.34]
 gi|395523769|gb|EJG11858.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC137]
 gi|395555849|gb|EJG21850.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC143]
 gi|395566440|gb|EJG28083.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC109]
 gi|400211184|gb|EJO42147.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-123]
 gi|400383247|gb|EJP41925.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC032]
 gi|400393050|gb|EJP60096.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-81]
 gi|404560754|gb|EKA65996.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-692]
 gi|404563300|gb|EKA68510.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii IS-116]
 gi|404668138|gb|EKB36047.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Ab33333]
 gi|404671210|gb|EKB39066.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Ab11111]
 gi|408512955|gb|EKK14593.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-72]
 gi|408700554|gb|EKL46005.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC098]
 gi|408707867|gb|EKL53146.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-13]
 gi|408715337|gb|EKL60465.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC110]
 gi|410378871|gb|EKP31480.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC087]
 gi|410379679|gb|EKP32282.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC065]
 gi|410386931|gb|EKP39393.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC099]
 gi|410410302|gb|EKP62216.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii WC-A-694]
 gi|410414927|gb|EKP66719.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC035]
 gi|444781140|gb|ELX05059.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii Naval-57]
 gi|452953492|gb|EME58911.1| DNA polymerase III subunit alpha [Acinetobacter baumannii MSP4-16]
          Length = 1187

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1171 (42%), Positives = 715/1171 (61%), Gaps = 53/1171 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D+++ A  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSTIRL-----NDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +P     I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ FKT
Sbjct: 174  QEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT +IAKRCN+ L+ G   LP++P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K        +++ +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  PKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+ G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  SSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP  L+E+  T    V+ +   L L        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPAKLNEITATRR-GVTTVYAGLVLDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLNKAFSLNEIR--- 1059

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC---INKSI-----------KYEM 1118
             +K +     +  I +   +L     K+    +L YC   +++ I           + E+
Sbjct: 1060 -QKRA----NSIQIKLTHDLLQPSLAKDLQNILLPYCNVDMHQHIAIQLQIDQPYAQAEL 1114

Query: 1119 KFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +    +KV P+D+L   L +  G  N  IEY
Sbjct: 1115 QLGPQWKVAPLDELLAKLRDYFGKDNIHIEY 1145


>gi|423686727|ref|ZP_17661535.1| DNA polymerase III subunit alpha [Vibrio fischeri SR5]
 gi|371494795|gb|EHN70393.1| DNA polymerase III subunit alpha [Vibrio fischeri SR5]
          Length = 1159

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1150 (42%), Positives = 725/1150 (63%), Gaps = 32/1150 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++       PA+A+TD +NL G++K+Y +A+  GIK
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGLVKYYFAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++    +   L +L KNN GY  L  L+S+AY          +  EWL  
Sbjct: 64   PIIGADFKVQSQEFGNELFNLTVLAKNNEGYKNLTLLISEAYQRGHVQHTPVMDKEWLVN 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG   GD+G A+  G  ++       +   FP+++Y+E+ R  + +    
Sbjct: 124  HK--EGLILLSGGKSGDVGKALLKGNKELVNECVEFYQTHFPEHYYLELTRTGRSDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ ++F+K  +F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVELAEKEHLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRRPKLYSDQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMKIEDFLVKKSQEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  ERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPSDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++ + +EG  RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPLYCDADGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEKEGKDPVRIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV +  +   L++LPP++N S  Y F + E       I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIIGLVDECFR-MKLTVLPPDVN-SGLYRFNVDEKGA----IV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IE I+  R K G F +LFDF  RID K  N+R++  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIENIIEARNKGGHFRDLFDFCARIDTKKTNKRVVEKLIRAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS+D A+K A +  +     Q  +F        +    Y+ VP W +K  L  
Sbjct: 893  PHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPKWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L++   T    + TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++  ++L+ +++++VSG+V  D F   ++++A ++  +
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYADLLETDKIVLVSGQVSFDDFNGGLKMSAREVMSL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV    +  N    ++   +L       +P  +YY      + ++    
Sbjct: 1073 GDAREKYARGLSVSVTESQINNQFFERFSQILEPNRAGTVPVNVYYQ-RADARVKLVLGT 1131

Query: 1123 NYKVQPIDDL 1132
             ++V P D L
Sbjct: 1132 EWRVTPTDQL 1141


>gi|254785234|ref|YP_003072662.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901]
 gi|237687442|gb|ACR14706.1| DNA polymerase III, alpha subunit [Teredinibacter turnerae T7901]
          Length = 1171

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1093 (42%), Positives = 703/1093 (64%), Gaps = 41/1093 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL++ +E+S++D ++R+  +++    +  PA  ITDL N FG++KFY++A   GIKPI
Sbjct: 3    FVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKPI 62

Query: 65   IGCDVWITNEIENK-KPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
             G D  I    ++   P  + L   N  GY  +  L+S+++ E  + G   I   WLE  
Sbjct: 63   CGADFRIHKAGDDDLHPPLITLYAMNLAGYKNITALISRSFQEGQSMGEPYIDESWLEP- 121

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
             + +G+IALSGA  G+IG  +   + D AE   ++   I+ D FY+E+QR  + N    +
Sbjct: 122  -HSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRTGRENDELHL 180

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
             + + +A+ ++ P+VAT+ ++FL   +F  HE R CI EG  L + +R ++++ EQ F++
Sbjct: 181  HRAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERRYSDEQYFRS 240

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
             +EM +LF DIP AI+NT+EIA+RCNL +  GK  LP++P P+ +  N+F     + GL 
Sbjct: 241  TAEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPEGLTENEFFEKICREGLD 300

Query: 304  KRLLNLYKD--PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
             RL  +     P+  +  K+ Y +RL+FE++ II+M F GYFLIV DFIQWAK++ IPVG
Sbjct: 301  LRLERILDTSAPDYLERRKV-YDERLKFELDIIIQMGFPGYFLIVMDFIQWAKDHKIPVG 359

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC E RD+VI YV 
Sbjct: 360  PGRGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEDRDKVIGYVA 419

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            D YG+DAVSQI+TFGTMAAK  +RDV RV    Y   D +SK+IP  P   +TL+ A ++
Sbjct: 420  DNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIP--PDVGMTLTKAYEQ 477

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            E  L E ++N+ + +++ ++A Q+EG+ RNVG HAGGV+IAP+KLI+F PLY  +   G+
Sbjct: 478  EEILREFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDFAPLYCDDTGGGL 537

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTY 599
            ++Q+DK+D+E+ GL+KFDFLGL TL+I+D  +  I +  T+       ++ +PL+D  T+
Sbjct: 538  VTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLDISAIPLDDPTTF 597

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG 657
            ++LKKA T AVFQLES+GMK+++K  +PD  E++IAL++L+RPGP+   ++ +F  RKHG
Sbjct: 598  DMLKKAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQSGMVDDFINRKHG 657

Query: 658  E-YFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
                 YPD +      + +L  TYG++VYQEQVMQIAQ+L GY+LG ADLLRRA+GKKK 
Sbjct: 658  RAQVAYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKP 717

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM + R  F +GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK H
Sbjct: 718  EEMAKQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAH 777

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + FMAA +S  MD T+K+   +++  +T  L++LPP++N  ++ F   ++ D     I
Sbjct: 778  YPAHFMAATMSSDMDKTDKVVTFIEEC-RTMKLNLLPPDVNRGEFQF--TVDEDA---NI 831

Query: 832  RYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
             YGLGAIKG G+  +E+I+  RK G F +LFDF  R+D + +N+R + +L+ SGA D   
Sbjct: 832  IYGLGAIKGLGEGPVESILEARKTGPFKDLFDFCARVDGRRLNKRALEALVRSGALDNLG 891

Query: 892  E------KRYMLVASIDVALKNAEKTKKFINQ--LSLFK-----NDDNNNLKEYLNYVKV 938
                    R ++  +I  A+K AE+     N     LF      ++D  ++  Y ++ +V
Sbjct: 892  PGKDIDYDRAVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSV--YQDFHRV 949

Query: 939  PSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS-CTVSGIITELK 997
              WS K+ L  EK+ LG  L+ H    Y+ E+  F+   +  LK   +  TV+G++   +
Sbjct: 950  RRWSMKERLNGEKETLGLYLTGHPIDEYDKELSNFVSSRIFHLKAEKNKQTVAGLVVAFR 1009

Query: 998  LKTTYRGK-ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +  T RG  +  + +DD +  +EV + +  Y  N+  L ++ LL+++G+V  D +   ++
Sbjct: 1010 VMKTKRGDNMAFVTLDDRTGRIEVAVFSDAYSDNREKLVKDALLVITGQVSFDDYSGGLK 1069

Query: 1057 INAEKIFDINVAR 1069
            + A++I D+N AR
Sbjct: 1070 MRADEITDLNEAR 1082


>gi|384084942|ref|ZP_09996117.1| DNA polymerase III subunit alpha [Acidithiobacillus thiooxidans ATCC
            19377]
          Length = 1168

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1125 (42%), Positives = 708/1125 (62%), Gaps = 37/1125 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P F+HL +HSEYS+ DG++ +  + +  A    PA+AITD  NLF ++KFY +A ++G+K
Sbjct: 4    PTFVHLHVHSEYSLEDGIIPVKALAKRCAEKNMPAVAITDHGNLFALVKFYNAARSQGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P+IG ++W+ +E +  +P+ L+LL  N  GY  L  LLS+AY+E    GR +I  EWL++
Sbjct: 64   PLIGSEIWVHDEGDADRPASLILLCMNKTGYANLSRLLSRAYLEGHQQGRPQIAAEWLQQ 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
                DGLIALS A  G+IG A+    +  AE  A+R++  FP+ FY+E+QR  + +    
Sbjct: 124  AS--DGLIALSAAGQGEIGRALLRRDHAQAERLAKRYADWFPERFYLELQRNGEKDQESL 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +Q  + +A  +NLP+VAT+   FL   +F A + R CI+ G  L + +R ++FT      
Sbjct: 182  LQATLGLAEKLNLPVVATNNAHFLDAADFAAFDARQCISAGLTLDDPRRPRRFTAAHRLP 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
               EM  LF D+P A  NT+EIAKRCNL+L  G+  LP +P P+  +++++L   ++ GL
Sbjct: 242  DPEEMRTLFADLPEACDNTVEIAKRCNLELVLGQYALPDYPIPEGQSVDEYLHEAAQKGL 301

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            + RL  L     I   + L Y +RL  E+  I +M F GYFLIV+DFIQWAKNN +PVGP
Sbjct: 302  QARLNAL----GIRAEDSLPYHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVGP 357

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DP+S  LLFERFLNP R+SMPDFD+DFC + RDRVIQYV +
Sbjct: 358  GRGSGAGSLVAYALGITDLDPISNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVAE 417

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
            +YG++ V QI+TFGTM A+  +RDVGRVL L Y F D ++KL+P   G  +TL+ A++E 
Sbjct: 418  KYGRERVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLG--MTLAKALEES 475

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY-KQEGMTGI 541
             +L  R   E++VR L+++A ++EG+ R+   HAGGV+I+P  L +  PL+    G  G 
Sbjct: 476  EELRRRQTEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFTDSSGGGGN 535

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTY 599
            ++Q DKDD+E++GL+KFDFLGL TL+I+D  +  I    +        + +LPL+D +T+
Sbjct: 536  VTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINAAAVTEGLAPLDIQQLPLDDAETF 595

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG 657
             LLK   TVAVFQLES GM+++++  +PD FE+I+AL++L+RPGP+   ++ +F  RKHG
Sbjct: 596  ALLKSTETVAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKHG 655

Query: 658  E-YFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIE 716
            +   +Y     + +L ETYG++VYQEQVMQ AQ+L GYSLG ADLLRRA+GKKK  EM +
Sbjct: 656  KAQVSYLHANLEPILKETYGVIVYQEQVMQSAQVLAGYSLGGADLLRRAMGKKKPEEMAK 715

Query: 717  HRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFF 776
             R  F  GA K GL   +A  IF+ +EKFA YGFNKSH+ AYAL+SY TAYLK HY  FF
Sbjct: 716  QRSIFLEGAHKNGLQPDQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPQFF 775

Query: 777  MAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLG 836
            MAA L+  MD T+K+  ++ +  +  GL I PP++  S   F P    +G+ + IR+GLG
Sbjct: 776  MAAVLTADMDHTDKVVAMIAEC-QRMGLRIAPPSVQCSGLEFKP----EGR-QDIRFGLG 829

Query: 837  AIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
            AIKG G++ I++I+  R+ G F +LFD   R+D + INRR + +LI +GA D +   R  
Sbjct: 830  AIKGLGRAAIQSILEARREGPFQSLFDLLCRVDSQKINRRALEALIRAGAMDDWQVSRAD 889

Query: 897  LVASIDVALKNAEKTKKFINQL--SLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
            L+AS++ A++ A + ++    L  SLF   +   +   +++ ++  W+  + L +E++ L
Sbjct: 890  LMASLENAIEAAAQFQQSRASLQESLFDGLEALPVAPPISHAEL--WTSTEILRQERETL 947

Query: 955  GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRG-KILIIVIDD 1013
            GF  S H       E+ +     LS +       V+G++   +   T RG +I  + +DD
Sbjct: 948  GFYFSGHPMDDLRVELAELGVQPLSNIVVGTVMLVAGLVVARRSTRTKRGDRIYFLTLDD 1007

Query: 1014 NSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYG 1073
                +EV++  +++ +   I +  E ++V G+V ED +   +R++A ++ D   AR    
Sbjct: 1008 GVGRLEVVVFAEVWAQAGKIGEGEEPVLVLGEVGEDSYSGGLRLSALRVLDRQRAREELA 1067

Query: 1074 KKFSVMFNRTFNIS--ILK----------KILLRFKCKNGLPFVL 1106
             + +V   +  +++  +L+          ++LLR    N L  +L
Sbjct: 1068 TQLTVEIPQGESLAPELLRDWLQQYPGSVRLLLRLPVDNDLQVLL 1112


>gi|416108715|ref|ZP_11591210.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype c str. SCC2302]
 gi|444346027|ref|ZP_21154009.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype c str. AAS4A]
 gi|348004240|gb|EGY44765.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype c str. SCC2302]
 gi|443542145|gb|ELT52512.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype c str. AAS4A]
          Length = 1158

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1163 (42%), Positives = 731/1163 (62%), Gaps = 45/1163 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+K
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEW 119
            PIIG DV + + +   +  RL LL KNN GY  +  LLSKAY      G A+   I  +W
Sbjct: 64   PIIGTDVLVQSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADWPYIDQQW 119

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +++   G+I LSG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+ 
Sbjct: 120  LVEHRA--GVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLTRTGRPDE 177

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
               I+  + +A    LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q
Sbjct: 178  ERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQ 237

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             F+++ EM  LF D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  ++   D+L+ ++K
Sbjct: 238  YFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLTTEDYLVKRAK 296

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297  DGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL  +LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357  VGPGRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V + YG  AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A 
Sbjct: 417  VAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAF 474

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            + EP+L E    +EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY      
Sbjct: 475  EAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGK 534

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF--SLNKLPLNDKD 597
              ++ +DK+D+E  GL+KFDFLGL TL+I+   +  I     K       ++ +PL+D+ 
Sbjct: 535  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLVDISAIPLDDQQ 594

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++++L  A T AVFQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 595  SFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 654

Query: 656  HG-EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD        K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKK
Sbjct: 655  HGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 714

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 715  KPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 774

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
             HY + FMAA ++  MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ 
Sbjct: 775  AHYPAEFMAAVMTSEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENG 828

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
            +I YG+GAIKG G+  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD
Sbjct: 829  EIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFD 888

Query: 889  CFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L  +++ AL+ +++  K   + Q+ +F      N +   +Y  +  W++K  
Sbjct: 889  KLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWTEKTI 948

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYR 1003
            L  E++ LG  LS H    Y  E+  + P+ L EL P Y     T SG++   ++  T +
Sbjct: 949  LDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRVAVTKK 1008

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G  I I  IDD S  +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +
Sbjct: 1009 GNHIGIATIDDRSGRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDL 1068

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKY 1116
              I+ AR  Y K  ++  ++     I  + + +FK        N LP  +YY   +  + 
Sbjct: 1069 MTIDEARARYAKSLAICLSQE---QITPQFIKQFKSILQPYSGNSLPVHIYYQSPQG-RA 1124

Query: 1117 EMKFPLNYKVQPIDDLKLALINL 1139
             +K  + + V P D+L   L  L
Sbjct: 1125 LVKMGVQWSVNPTDELLTELAAL 1147


>gi|254360522|ref|ZP_04976671.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            PHL213]
 gi|153091062|gb|EDN73067.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            PHL213]
          Length = 1142

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1116 (43%), Positives = 708/1116 (63%), Gaps = 38/1116 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +I+GL ++  +++ AA +   A+ +TD  N  G++KFY  A   GIKPIIG DV++  E 
Sbjct: 1    MINGLAKVKSLVKTAAANNMVAMGLTDFINFCGLVKFYGEALGAGIKPIIGADVYVRTES 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWLEKNKYQDGLIAL 132
             N+    L LL KNN GY  + ++LSKAY      G  E   +  EWL   +  +G+I L
Sbjct: 61   GNEDYFELTLLAKNNKGYHNITQILSKAY----QQGYVEFPMVEREWL--AELNEGIIIL 114

Query: 133  SGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASN 192
            SG  +GD+G A+       AE     + + +P++FY+ + R  + +    I+Q +  +  
Sbjct: 115  SGGRMGDVGKALLKENRQEAEEKLAFYQQYYPNHFYLSVCRTGRADEERYIKQAVEFSQK 174

Query: 193  INLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFY 252
              +P+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q F+T+ EM KLF 
Sbjct: 175  NAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFA 234

Query: 253  DIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKD 312
            D+PSA+ NT+EIAKRC++ +  G+  LP FPT   ++  DFL+ KSK GL++RL  L+ D
Sbjct: 235  DLPSALANTVEIAKRCSVTVRLGEYFLPNFPT-GELSTEDFLVKKSKEGLEERLEFLFPD 293

Query: 313  PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLV 372
            PE    ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLV
Sbjct: 294  PEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLV 353

Query: 373  AYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQI 432
            AY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V + YG+ AVSQI
Sbjct: 354  AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQI 413

Query: 433  VTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNE 492
            +TFGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL  A   EP+L E  + +
Sbjct: 414  ITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLEKAFAAEPKLPELYEAD 471

Query: 493  EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEE 552
            EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY        ++ +DK+D+E 
Sbjct: 472  EEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEY 531

Query: 553  IGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAV 610
             GL+KFDFLGL TL+I+   +  I +   +       +  +PL+DK ++ LL  A T AV
Sbjct: 532  AGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETIPLDDKKSFALLLAAKTTAV 591

Query: 611  FQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR- 666
            FQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKHG E  +YPDP+ 
Sbjct: 592  FQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQY 651

Query: 667  ----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQ 722
                 K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+GKKK  EM   R+ F+
Sbjct: 652  QHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFE 711

Query: 723  NGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLS 782
             GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++
Sbjct: 712  KGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT 771

Query: 783  LSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTG 842
              MD+T+KI +   D     GL+++PP++N  K+ F     S  +  +I YGLGAIKG G
Sbjct: 772  SEMDNTDKI-VGFYDECMNMGLTVVPPDVNSGKHRF-----SVNEKGEIVYGLGAIKGVG 825

Query: 843  KSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
            +  IEAI+  R K G F +LFD T R+D K INRR   SLI SGAFD     R  L+ ++
Sbjct: 826  EGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNL 885

Query: 902  DVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            + ALK +++  K   + Q  +F        +    Y   P WS++  L  E+  LG  LS
Sbjct: 886  EDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLS 945

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNS 1015
             H    +  E+  + P  L+EL+PT+     TVSGI+   ++  T RG +I I  I+D S
Sbjct: 946  GHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRS 1005

Query: 1016 NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKK 1075
              +++ + ++  E   ++++++++++ +G V  D F   ++++A ++  ++ AR  + K 
Sbjct: 1006 GKLDITLFSEALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKS 1065

Query: 1076 FSVMFNR-TFNISILKKI--LLRFKCKNGLPFVLYY 1108
             ++  ++   +   +KK+  ++    +  LP   YY
Sbjct: 1066 LALAISKEQLSADFIKKMTAIITPHKEGTLPLHFYY 1101


>gi|445432527|ref|ZP_21439272.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC021]
 gi|444758823|gb|ELW83313.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii OIFC021]
          Length = 1187

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1171 (42%), Positives = 715/1171 (61%), Gaps = 53/1171 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +++E+SI + ++RI D+++AA  D  PALA+TDLSNL   +KFY S   KGIKP
Sbjct: 2    QFVHLGIYTEFSITESIVRIPDLVKAAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  ++ G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSTIRL-----NDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLE- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +      I
Sbjct: 116  QHQD-IIVLLGQH-SDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTDRAGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+   +A+  N+ +VA + + F++K +F AHE R CIA+G +L++ +R + ++ EQ+FKT
Sbjct: 174  QEAAKLAAKYNIGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQHFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EMI+LF DIPSAI+NT  IAKRCN+ L+ G   LP++P P    I+ +    SK GL+
Sbjct: 234  SDEMIELFSDIPSAIENTYYIAKRCNVSLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLE 293

Query: 304  KRLLNLY---KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            +RL  LY   K  E +   +  Y +R+ +E+  I+KM F GYFLIV DFIQWAKNN +PV
Sbjct: 294  ERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPV 353

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI YV
Sbjct: 354  GPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYV 413

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
               YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L+ AI+
Sbjct: 414  SRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLATAIE 472

Query: 481  EEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQ 535
             EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ +F  +   
Sbjct: 473  MEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCD 532

Query: 536  EGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLND 595
               T  ++QYDKDD+E  GL+KFDFLGL  L++++  I  I K        +++ +PL+D
Sbjct: 533  ADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDD 592

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRK 655
               Y++   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R 
Sbjct: 593  PKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRM 652

Query: 656  HGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMI 715
            HG  F Y  P  + VL  TYGIMVYQEQVMQ AQI  GY+LG ADLLRRA+GKKK  EM+
Sbjct: 653  HGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMV 712

Query: 716  EHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSF 775
            + R+ F  GA + G+ +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY + 
Sbjct: 713  KQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAE 772

Query: 776  FMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGL 835
            FMAA +S  M +T+ +  L+ D  +  GL +LPP++N+S Y+F     SD   K I YGL
Sbjct: 773  FMAAVMSSEMQNTDSVVFLIDDC-RNNGLEVLPPSVNMSTYHFH---ASD--DKTIVYGL 826

Query: 836  GAIKGTGKSTIEAIV-TERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKR 894
            GAIKG G+  +++++ + R+ G +T+LFDF  RID K IN+R + +LI +GA DC   +R
Sbjct: 827  GAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIER 886

Query: 895  YMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKK 952
              L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK 
Sbjct: 887  SSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEKD 943

Query: 953  VLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID 1012
             LG  L+ H   +Y  E++ FIP  L+E+  T    V+ +   L L        ++IV+D
Sbjct: 944  TLGLYLTGHPIDVYRQELKAFIPAKLNEITATRR-GVTTVYAGLVLDVANFPNRVVIVLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D +  +EV  N++ +++ K+I++   +++  G++ E            K F +N  R   
Sbjct: 1003 DGTARIEVSCNHERFQRFKDIIQVERVVVFEGEIYEREGFDRPMGRLNKAFSLNEIR--- 1059

Query: 1073 GKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYC---INKSI-----------KYEM 1118
             +K +     +  I +   +L     K+    +L YC   +++ I           + E+
Sbjct: 1060 -QKRA----NSIQIKLTHDLLQPSLAKDLQNILLPYCNVDMHQHIAIQLQIDQPYAQAEL 1114

Query: 1119 KFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +    +KV P+D+L   L +  G  N  IEY
Sbjct: 1115 QLGPQWKVAPLDELLAKLRDYFGKDNIHIEY 1145


>gi|430761178|ref|YP_007217035.1| DNA polymerase III alpha subunit [Thioalkalivibrio nitratireducens
            DSM 14787]
 gi|430010802|gb|AGA33554.1| DNA polymerase III alpha subunit [Thioalkalivibrio nitratireducens
            DSM 14787]
          Length = 1151

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1153 (40%), Positives = 713/1153 (61%), Gaps = 51/1153 (4%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HLR+HSEYS++DGL+R+  +++A A    PA+A+TD  NLFG++KFY++A   G++PI
Sbjct: 4    FVHLRVHSEYSLVDGLVRLKPLVQAVAGAGMPAVAVTDHCNLFGLVKFYRAALVAGVQPI 63

Query: 65   IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
            +G DV + +   +   +RL LL +N+ GY  L  L+S+A+ E    G   +   WLE   
Sbjct: 64   VGADVLLRDARSDGSLARLTLLAQNDVGYRHLTRLISRAWQEGQERGVPRLDCAWLEGAS 123

Query: 125  YQDGLIALSGAHLGDIGIAVQNGRNDI---AENFARRWSKIFPDNFYIEIQRFKQPNMNF 181
              DGLIALSG      G+ VQ     +    E  A  W  +FPD FY+E+ R  +P    
Sbjct: 124  --DGLIALSGTI---DGLFVQGSGAPVRLSGEVLAP-WLALFPDRFYLELTRSGRPGEEA 177

Query: 182  QIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNF 241
             I   ++ A    +P+VAT+ ++FL   +F AHE R CI +G +L++ +R ++++++Q  
Sbjct: 178  WIAAALDAAEAFGVPVVATNDVRFLASEDFEAHEARVCIHDGVVLADPRRPRRYSEQQYL 237

Query: 242  KTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHG 301
            +T  EM +LF DIP A+ N + IA+RC+++L  G+  LP FP P+  ++++ L   +  G
Sbjct: 238  RTPEEMAELFSDIPEALANAVAIARRCSVRLTLGESVLPDFPVPEGRSVDEHLRLTAAEG 297

Query: 302  LKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            L  RL      P      +  Y +RL+ E++ I +M F GYFLIV+DFI+WA+NN IPVG
Sbjct: 298  LDARLERHCFAP------RSDYTQRLERELDVICQMGFPGYFLIVADFIRWARNNRIPVG 351

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFDIDFC + RDRVI YV 
Sbjct: 352  PGRGSGAGSLVAYALGITDLDPLRYELLFERFLNPERVSMPDFDIDFCMDRRDRVIDYVA 411

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            +RYG+D VSQI+T GTMAAK  +RD GRVL   Y F D I+KLIPF+ G  +TL+ A++E
Sbjct: 412  ERYGRDRVSQIITHGTMAAKAVVRDCGRVLGHGYGFVDRIAKLIPFELG--MTLTRALQE 469

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
              +L      +EEVR +++LA ++EG+ RN G HAGGV+IAPS L +F PLY +EG   +
Sbjct: 470  SEELKALYDEDEEVRGILDLALKLEGLTRNAGKHAGGVVIAPSALTDFSPLYCEEGGGSL 529

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
            ++ +DKDD+E +GL+KFDFLGL TL+I+D T+  I+++  +     L+ +PL+D   + L
Sbjct: 530  VTHFDKDDVEAVGLVKFDFLGLRTLTIIDWTLESIRQMPGQQP-VDLDLIPLDDPAAFQL 588

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHGEY 659
            L+   T AVFQLES GMK++++  +PD FE+IIAL++LYRPGP+   ++ +F  RKHG  
Sbjct: 589  LQAYQTTAVFQLESGGMKDLIRRLQPDTFEDIIALVALYRPGPLQSGMVDDFIDRKHGRA 648

Query: 660  -FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHR 718
               YP P  + +L  TYG+++YQEQVMQIAQ+L  Y+LG ADLLRRA+GKKK  EM + R
Sbjct: 649  QVEYPHPDLEPILKPTYGVILYQEQVMQIAQVLASYTLGGADLLRRAMGKKKPEEMAKQR 708

Query: 719  KFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMA 778
            + F  GA+  G+++  A  IF+ +EKFAGYGFNKSH+ AYALL+Y TA+LK HY + FMA
Sbjct: 709  EIFLKGALARGVAEATATYIFDLMEKFAGYGFNKSHSAAYALLAYQTAWLKAHYPAPFMA 768

Query: 779  ANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAI 838
            A LS  MD+T+K+  L+++  ++ GL + PP++N S Y F     S      + YGLGAI
Sbjct: 769  AVLSADMDNTDKVVGLIEEC-RSLGLRVEPPDVNRSAYRF-----SVRDAGTVVYGLGAI 822

Query: 839  KGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYML 897
            KG G+S I+ ++  R   G F +L D  +R+D   +N+R++ +LI +GA D     R  L
Sbjct: 823  KGVGESAIDTLLKARGDDGAFHSLVDLCQRVDLGKLNKRVLETLIRAGAMDRIGANRATL 882

Query: 898  VASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLG 955
            +A++ +A+  AE+  +   +  + LF    +  L E+     +P     + L  EK  LG
Sbjct: 883  LAAMPLAVAAAEQAGRNAELGVVDLFGEPASAVLPEFET---LPELDDDERLRGEKDTLG 939

Query: 956  FCLSEHIFCIYETEIRQFIPIYLSELKPTY--------------SCTVSGIITELKLKTT 1001
              L+ H    Y  E+R+     L EL+                 +  ++G++  ++L+ +
Sbjct: 940  LYLTGHPVARYREELRRLTGTTLQELETRLESRPDRNAYRGRQDTARIAGLVVGVRLRNS 999

Query: 1002 YRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEK 1061
              G++ ++ +DD +   E+ +  + Y ++++ L  + L++  G V+ D +   IR+ A++
Sbjct: 1000 QNGRMAVVTLDDQTGRAELALFGEHYREHQSRLVPDSLIVAEGTVMLDDYAGGIRMRAQR 1059

Query: 1062 IFDINVARILYGK--KFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMK 1119
            +  ++ AR  + +    S+   R  +I  L + L      +    + Y C +     E++
Sbjct: 1060 VLTLDEARAEWARVLDLSLAAVRPEHIHSLHRALTEHDPGSCRLRMRYRCGDTCA--ELR 1117

Query: 1120 FPLNYKVQPIDDL 1132
             P   +++P + L
Sbjct: 1118 LPEELQIRPDEQL 1130


>gi|392548421|ref|ZP_10295558.1| DNA polymerase III subunit alpha [Pseudoalteromonas rubra ATCC 29570]
          Length = 1163

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1162 (42%), Positives = 725/1162 (62%), Gaps = 51/1162 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL +   ++  AA    PA AITD  NL G+++FY +A+  GIK
Sbjct: 4    PEFVHLRVHSDFSMVDGLAKTKPIVARAAELGMPAFAITDQMNLCGLVRFYGTAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D W+ ++    +PSR+++L KNN GY  L  L+S+AY+    + R  I   WL K
Sbjct: 64   PLVGADFWLKSDQFPDEPSRIVVLAKNNEGYKNLTLLISEAYLRGHVFHRPVIDKAWLAK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y++GLI LSGA  GD+G A+  G   +  +    +   F +++Y+E+ R  +      
Sbjct: 124  --YKEGLILLSGAKDGDVGKALLKGNPQLVADTVEFYETHFANHYYLELHRTGREQEEEY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+   LP+VAT+ + FL + +F  HE+R  I +G  L +  R ++F+KEQ  K
Sbjct: 182  LHAAVALATQRGLPVVATNEVVFLHEQDFEPHEIRVAIHDGYTLEDKNRPRRFSKEQYLK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T  +M +LF DIP A+QNT+EIAKRCN+ ++ G   LP +PT   + I DFL+  S+ GL
Sbjct: 242  TPEQMQELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPT-GELKIEDFLVKVSRDGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RLL L+ D      +++ Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLLFLFPDDADRAEKRIPYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSK 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+ AVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  LYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPGDPG--MTLAKAFEVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E    +EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F  LY  E     +
Sbjct: 479  PRLPEVYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTSITDFAALYCDEEGKFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSI----LDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
            +Q+DK+D+E  GL+KFDFLGL TL+I    LD T   + +   +  + +   +PL+D  +
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLARDGIEPVDIA--AIPLDDPAS 596

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + +L +A T AVFQLES+GMK++++  KPD FE++IAL++L+RPGP+   ++ NF  RKH
Sbjct: 597  FEVLLRAETTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656

Query: 657  G-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  +YPD +      + +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK
Sbjct: 657  GREDISYPDAQYQHESLQPILEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKK 716

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++KT
Sbjct: 717  PEEMAKQRTTFEDGAKDNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKT 776

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
            HY + FMAA +S  MD+T+KI  LV D  +   L++LPP++N   Y F     +  +  +
Sbjct: 777  HYPAEFMAAVMSADMDNTDKIVTLV-DECENMKLTLLPPDVNAGVYKF-----AVNRQGE 830

Query: 831  IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YG+GAIKG G+  +EAI+  R + G F +LFDF  R+D K +NRR+I  LI +GA D 
Sbjct: 831  IVYGIGAIKGVGEGPVEAILEAREQGGPFKDLFDFCARVDLKRLNRRVIEKLIYAGALDQ 890

Query: 890  FNEK-----RYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWS 942
               +     R  L+AS+  A+K+AE+  K   + Q  LF        +    +VK    S
Sbjct: 891  LGPEKTQPGRATLLASLKDAMKSAEQHHKAESLGQSDLFGLLAVEPDEVEQAFVKAIGLS 950

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLK 999
              + L  EK  LG  L+ H    Y  E++ +    L EL+PT      T +G++   ++ 
Sbjct: 951  DDEWLQGEKDTLGLYLTGHPINQYRKELKNYTSGRLVELQPTNRDVQSTAAGLVINARVL 1010

Query: 1000 TTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
               +GK   +I +DD S  ++V +  + +E  +++L+ N++L++SG+V  D F   I + 
Sbjct: 1011 INKKGKRWGLITLDDKSARIDVRLFPEQFEMYQDMLQMNQILVISGQVSFDNFSGGITMT 1070

Query: 1059 AEKIFDINVARILYGKKFSVMFNRTFN--------ISILKKILLRFKCKNGLPFVLYYCI 1110
            A ++  I  AR    K+ S +   T N        I  LKK+L  +K     P  + Y  
Sbjct: 1071 AREVCTIAQAR---EKRISAI-KMTLNMVQIDANFIDNLKKVLEPYKFGT-CPVKIQYQR 1125

Query: 1111 NKSIKYEMKFPLNYKVQPIDDL 1132
              +I  E+   + + V P DDL
Sbjct: 1126 PDAIA-EVTLGMQWCVTPSDDL 1146


>gi|409202205|ref|ZP_11230408.1| DNA polymerase III subunit alpha [Pseudoalteromonas flavipulchra JG1]
          Length = 1163

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1089 (44%), Positives = 695/1089 (63%), Gaps = 33/1089 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF+HLR+HS++S++DGL +   ++  A     PALAITD  NL G+++FY  A+  GIK
Sbjct: 4    PQFVHLRVHSDFSMVDGLAKTKPIVARAEELAMPALAITDQMNLCGLVRFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+ ++    +PSR+L+L KNN GY  L  L+S AY+    + R  I  EWL K
Sbjct: 64   PIIGADFWLKSDQFPDEPSRILVLAKNNQGYKNLTLLISDAYLRGHVFHRPVIDKEWLAK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y++GLI +SGA  GD+G A+  G   + E     + + F D+FYIE+QR  +      
Sbjct: 124  --YKEGLILISGAKDGDLGKAILKGNPKLIEETLAFYEQHFSDHFYIELQRTARAQEEEY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  N+P+VAT+ + FL + +F AHE+R  I +G  L +  R K+F+KEQ  K
Sbjct: 182  LHGAVEVAAARNIPVVATNEVVFLHEKDFDAHEIRVAIHDGYTLEDKNRPKRFSKEQYLK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T  +M  LF DIP A++NT+EIAKRCN+ ++ G   LP +PT  ++ I DFL+  S+ GL
Sbjct: 242  TSEQMQALFSDIPEALENTVEIAKRCNVTVQLGTYFLPDYPT-GDLAIEDFLVKVSRDGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D    K ++  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLQFLFPDENDRKEKRGEYDDRLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAK 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A   E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPGDPG--MTLAKAFDVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E   ++EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F  LY  E     +
Sbjct: 479  PRLPEAYDSDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDEEGKFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+IL   +    +   + +     +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTILQWALDMANERLGRESREPIDIAAIPLDDPASFK 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L  A T AVFQLES+GMK++++  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  VLLDAQTTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      + +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAQYQHESLQPILEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++KTH+
Sbjct: 719  EMAKQRATFEDGAKDNGVEGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +   L++LPP++N   Y F   ++ +     I 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVTLV-DECENMKLTLLPPDVNAGVYKFAVNLQGE-----IV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YGLGAIKG G+  +EAI+  R + G F +LFDF  R+D K +N+R+I  LI +GA D   
Sbjct: 833  YGLGAIKGVGEGPVEAILEARAQGGEFKDLFDFCARVDLKRLNKRVIEKLIYAGALDKLG 892

Query: 892  EK-----RYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKK 944
                   R  L+AS+  A+K+AE+  K   + Q  LF        +    ++K    S K
Sbjct: 893  PDRDQPGRATLLASLKDAMKSAEQHHKAESLGQSDLFGLLAVEPEEVEQAFIKATPLSDK 952

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV---SGIITELKLKTT 1001
            + L  EK+ LG  L+ H    Y  E++ +    L +L+P    TV   +G++   +    
Sbjct: 953  EWLNGEKETLGLYLTGHPINQYRKELKYYTSGKLVDLQPGNRDTVATAAGLVINARTLIN 1012

Query: 1002 YRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             +G +  +I +DD S  ++V +  + +E  + +L+ N++L++SG+V  D F   I + A 
Sbjct: 1013 KKGARWGLITLDDKSARIDVRLFPEQFEMYQEMLQINQILVISGQVSFDNFSGGITMTAR 1072

Query: 1061 KIFDINVAR 1069
            +I  I  AR
Sbjct: 1073 EISTIAQAR 1081


>gi|406039808|ref|ZP_11047163.1| DNA polymerase III subunit alpha [Acinetobacter ursingii DSM 16037 =
            CIP 107286]
          Length = 1187

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1166 (42%), Positives = 721/1166 (61%), Gaps = 43/1166 (3%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +H+E+SI + ++RI D+I+AA N+  PALA+TDLSNL   +KFY+S  +KGIKP
Sbjct: 2    QFVHLGIHTEFSITESIVRIPDLIKAAVNESMPALALTDLSNLHAAVKFYESCLSKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G ++ +     N    R+ LL   N+G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   ILGSEIRL-----NDAEHRVTLLAMTNDGWRSLTEIVSRGFIEGQQLSIPCVQKEWVLQ- 115

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
            ++QD +I L G H  D+G  + +     AE     W + F +  Y+ + R  +      I
Sbjct: 116  QHQD-MIVLLGQH-SDVGKMLCSSNPQKAEALLEAWQEKFGNRVYLALTRTDRAGEEDYI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            Q+ + +A+  ++ +VA + + F++  +F AHE R CIA+G +L++ +R + ++  Q FKT
Sbjct: 174  QEAVKLAAKYHVGVVAHNDVHFIESDDFEAHEARVCIADGYVLADDRRPRNYSPAQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              EM +LF DIPSA+ NT  IA+RCN+ L+ G   LP +P P+   I+ +    SK GL+
Sbjct: 234  AEEMAELFSDIPSALDNTYYIAQRCNVSLQLGTYFLPDYPIPEGFTIDTYFEHLSKVGLE 293

Query: 304  KRLLNLY----KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
            +RL  LY    +D +  +  K  Y +R+++E++ I+KM F GYFLIV DFIQWAKNN +P
Sbjct: 294  ERLELLYPVAERDEDWNEIRK-PYDERIKYEVDIILKMGFPGYFLIVMDFIQWAKNNGVP 352

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRVI Y
Sbjct: 353  VGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDY 412

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V   YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L  AI
Sbjct: 413  VSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLKQAI 471

Query: 480  KEEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
              EPQL + + N      ++  ++ ++A ++EGI RN G HAGGV+IAP K+ ++  +  
Sbjct: 472  DMEPQLKDIVTNPSNPDNDDASEIWDMALKLEGITRNTGKHAGGVVIAPGKITDYSAVMC 531

Query: 535  QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN 594
            +   T  ++Q+DKDD+E  GL+KFDFLGL  L++++  I  I K +      ++ ++PL+
Sbjct: 532  EADGTSRVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKRSDVKEPLAIERVPLD 591

Query: 595  DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRR 654
            D D Y +   ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F  R
Sbjct: 592  DVDAYKVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHR 651

Query: 655  KHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEM 714
             HG  F Y  P  + VL  TYGIMVYQEQVMQ AQ   GY+LG ADLLRRA+GKKK  EM
Sbjct: 652  MHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEM 711

Query: 715  IEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSS 774
            ++ R+ F  GA +  + +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK HY +
Sbjct: 712  VKQRQIFIEGAAQKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPA 771

Query: 775  FFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYG 834
             FMAA +S  M +T+ +  L+ D  ++ GL +LPP++N+S Y F    E     K + YG
Sbjct: 772  EFMAAVMSSEMQNTDNVVFLIDDC-RSNGLDVLPPSVNMSIYRFHASDE-----KTVVYG 825

Query: 835  LGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEK 893
            LGAIKG G+  +++++  R K G +T+LFDF  RID K IN+R + +LI +GA DC   +
Sbjct: 826  LGAIKGVGEQAMQSVIDSREKDGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIE 885

Query: 894  RYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEK 951
            R  L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L  EK
Sbjct: 886  RSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLKGEK 942

Query: 952  KVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVI 1011
             +LG  L+ H   +Y +E++ FIP+ ++EL PT     + +   L L        ++I +
Sbjct: 943  DILGLYLTGHPIDVYRSELKAFIPLKINELTPTRRGQTT-VFAGLVLDVANFPNRIMITL 1001

Query: 1012 DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARIL 1071
            DD +  +EV  N++ +++ K+I++  +++++ G++ E            K F +N  R  
Sbjct: 1002 DDGTARIEVSCNHERFQRFKDIVQVEQVVVIEGEIYEREGFDRPMARLSKAFSLNEIRQK 1061

Query: 1072 YGKKFSVMFNRTF-NISI---LKKILLRFK----CKNGLPFVLYYCINKSIKYEMKFPLN 1123
                  +   +   N ++   L++I+L F     C++ +P  +    N +   E+    N
Sbjct: 1062 RANHIRIQPTQDLMNPALAHDLQQIILPFCNIDLCQH-IPVQIAIEQNYATA-ELHLGQN 1119

Query: 1124 YKVQPIDDLKLALIN-LGLYNAIIEY 1148
            +KV P+D+L + L +  G  +  IEY
Sbjct: 1120 WKVAPLDELLVKLRDYFGKESVYIEY 1145


>gi|343505406|ref|ZP_08742978.1| DNA polymerase III subunit alpha [Vibrio ichthyoenteri ATCC 700023]
 gi|342807704|gb|EGU42884.1| DNA polymerase III subunit alpha [Vibrio ichthyoenteri ATCC 700023]
          Length = 1159

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1161 (42%), Positives = 722/1161 (62%), Gaps = 48/1161 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS+IDGL ++  +++  A    PA+A+TD +NL G++KFY +A+  GIK
Sbjct: 4    PKFIHLRVHSDYSMIDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGAAHGCGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L ++  +N GY  L  L+SKAY+      +  I   WL  
Sbjct: 64   PIIGADFVMQSPEFGDELTKLTVIASDNTGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +  +GLI LSG   G+IG A+  G   +       + + F D FY+E+ R  + +    
Sbjct: 122  VELAEGLIVLSGGKSGEIGKALLKGNQVLVNQCVSFYQQHFADRFYLELTRTGRVDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +++A   +LP+VAT+ + FL++  F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFALDLAERSDLPVVATNEVVFLREELFDAHEIRVAIHDGYTLEDPRRPKNYSAQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +   +  LP FPT + +   DFL+ KS+ GL
Sbjct: 242  SEEEMCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPT-EGMEETDFLVMKSREGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D       +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLEFLFPDEATRLARRPEYDDRLQVELDVINQMGFPGYFLIVMEFIQWSKDNEIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFAAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +E+V++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYAADEDVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADTEGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK-----TTNFSLNKLPLNDKD 597
            +Q+DK+D+E  GL+KFDFLGL TL+I+D   + ++ IN +          +  +PL D+ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIID---WALRLINPRLEREGQAPVRIESIPLVDEA 595

Query: 598  TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
            ++ +L+ + T AVFQLES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RK
Sbjct: 596  SFRVLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 655

Query: 656  HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
            HG E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct: 656  HGREAVSYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query: 710  KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
            K  EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK
Sbjct: 716  KPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query: 770  THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
            THY + FMAA ++  MD+T K+  LV + ++   L +LPP+IN   Y F   ++ DG   
Sbjct: 776  THYPAEFMAAVMTADMDNTEKVVGLVDECLR-MKLKVLPPDINSGLYRFN--VDEDG--- 829

Query: 830  KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
             I YG+GAIKG G+  IEAI+  R + G F +LFDF  RID K +N+R+I  LI +GA D
Sbjct: 830  AIVYGIGAIKGVGEGPIEAILASRNQDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALD 889

Query: 889  CFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQE 946
                 R  L+AS++ A+K A +  +     Q  LF        +    Y KVP W +K  
Sbjct: 890  RLGPHRAALMASLNDAVKAASQHHQAESFGQTDLFGVLTEAPEEVEHKYTKVPPWPEKVW 949

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYR 1003
            L  E+  LG  L+ H    Y  E+ ++    L++  PT    S T++G++   ++ TT R
Sbjct: 950  LEGERDTLGLYLTGHPINAYIKELGKYTSCRLNDATPTRRDQSVTIAGLVIAARVMTTKR 1009

Query: 1004 G-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKI 1062
            G +I ++ +DD S  +EV++ +   E+   +L+ +++L+VSG+V  D F   +++ A ++
Sbjct: 1010 GNRIGLMTLDDRSGRMEVMLFSDALERYAELLESDKILVVSGQVSFDDFNGGLKMTAREV 1069

Query: 1063 FDINVARILYGKKFSVMFNRTFNISILKKILLRFKC------KNGLPFVLYYCINKSIKY 1116
             D+  AR  Y +  SV  + T    I  +   RF           +P  +YY  + + + 
Sbjct: 1070 MDLGSAREKYARGLSVSISET---QIDNQFFERFNSILEPHRAGTIPVHVYYQRSDA-RA 1125

Query: 1117 EMKFPLNYKVQP----IDDLK 1133
             +     ++V P    +DDLK
Sbjct: 1126 RLTLGTEWRVTPSDSLLDDLK 1146


>gi|416069675|ref|ZP_11583351.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype f str. D18P1]
 gi|347999784|gb|EGY40599.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans serotype f str. D18P1]
          Length = 1142

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1150 (42%), Positives = 720/1150 (62%), Gaps = 45/1150 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+KPIIG DV + + +
Sbjct: 1    MIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVKPIIGTDVLVQSAL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWLEKNKYQDGLIAL 132
               +  RL LL KNN GY  +  LLSKAY      G A+   I  +WL +++   G+I L
Sbjct: 61   CGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADLPYIDQQWLVEHRA--GVIVL 114

Query: 133  SGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASN 192
            SG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+    I+  + +A  
Sbjct: 115  SGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLTRTGRPDEERYIKVALELAEQ 174

Query: 193  INLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFY 252
              LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q F+++ EM  LF 
Sbjct: 175  QQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQYFRSEQEMCDLFA 234

Query: 253  DIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKD 312
            D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  ++ D
Sbjct: 235  DVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDYLVKRAKDGLEERLKVMFPD 293

Query: 313  PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLV 372
             ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLV
Sbjct: 294  EKVRTERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLV 353

Query: 373  AYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQI 432
            AY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +V + YG  AVSQI
Sbjct: 354  AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHVAEMYGHGAVSQI 413

Query: 433  VTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNE 492
            +TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EP+L E    +
Sbjct: 414  ITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAFEAEPKLQEIYDAD 471

Query: 493  EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEE 552
            EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY        ++ +DK+D+E 
Sbjct: 472  EEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGKHPVTHFDKNDVEY 531

Query: 553  IGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF--SLNKLPLNDKDTYNLLKKANTVAV 610
             GL+KFDFLGL TL+I+   +  I     K       +N +PL+D+ ++++L  A T AV
Sbjct: 532  AGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLVDINAIPLDDQQSFDVLLNAETTAV 591

Query: 611  FQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDP-- 665
            FQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD   
Sbjct: 592  FQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEVSYPDANY 651

Query: 666  ---RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQ 722
                 K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  EM + R  F+
Sbjct: 652  QHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAKQRSVFE 711

Query: 723  NGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLS 782
             GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++
Sbjct: 712  EGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT 771

Query: 783  LSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTG 842
              MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ +I YG+GAIKG G
Sbjct: 772  SEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENGEIVYGIGAIKGVG 825

Query: 843  KSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
            +  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD     R  L  ++
Sbjct: 826  EGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFDKLGPHRAALQQNL 885

Query: 902  DVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            + AL+ +++  K   + Q+ +F      N +   +Y  +  W++K  L  E++ LG  LS
Sbjct: 886  EDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWTEKTILDGERETLGLYLS 945

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNS 1015
             H    Y  E+  + P+ L EL P Y     T SG++   ++  T +G  I I  IDD S
Sbjct: 946  SHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVMSTRVAVTKKGNHIGIATIDDRS 1005

Query: 1016 NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKK 1075
              +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +  I+ AR  Y K 
Sbjct: 1006 GRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDLMTIDEARARYAKS 1065

Query: 1076 FSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKYEMKFPLNYKVQPI 1129
             ++  ++     I  + + +FK        N LP  +YY   +  +  +K  + + V P 
Sbjct: 1066 LAICLSQE---QITPQFIKQFKSILQPYSGNSLPVHIYYQSPQG-RALVKMGVQWSVNPT 1121

Query: 1130 DDLKLALINL 1139
            D+L   L  L
Sbjct: 1122 DELLTELAAL 1131


>gi|392551147|ref|ZP_10298284.1| DNA polymerase III subunit alpha [Pseudoalteromonas spongiae
            UST010723-006]
          Length = 1163

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1089 (43%), Positives = 706/1089 (64%), Gaps = 33/1089 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DGL +   ++   A    PA AITD  NL G+++FY +A+  GIK
Sbjct: 4    PKFIHLRVHSDYSMVDGLAKTKPIVGKIAELNMPAFAITDQMNLCGLVRFYGAAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D+W+ +     +P RL++L KNN GY  L  L+SKAY       R  +  EWL +
Sbjct: 64   PIVGADLWLHSPEFPDEPCRLVVLAKNNAGYKNLTLLISKAYQRGHLMQRPMVDKEWLIE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSGA  GD+G A+  G ND+ ++    + + F D++YIE+ R ++      
Sbjct: 124  HK--EGLILLSGAKDGDLGKALLKGNNDLTKSIGNFYLEHFKDHYYIELTRTEREQEEDY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   +  A    LP+VAT+ + FL K +F AHE+R  I +G  L + +R K+F+++Q  K
Sbjct: 182  LHSAVAYAQYSGLPVVATNEVVFLNKEDFEAHEIRVAIHDGFTLDDKRRPKRFSEQQYLK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ +M +LF DIP A++N++EIAKRCN+ ++ G   LP +PT  +++I DFL+  S+ GL
Sbjct: 242  TEEQMCELFSDIPEALENSVEIAKRCNVTIQLGTYFLPDYPT-GSLSIEDFLVKVSEDGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D E  K +++ Y  RL+ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLQFLFPDEEDRKVKRVEYDDRLRIELDVINQMGFPGYFLIVMEFIQWSKDNIIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAK 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A   E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPGDPG--MTLAKAFDVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E    ++EV++LI++ + +EG  RN G HAGGV+I+P+ + +F  LY  +     +
Sbjct: 479  PRLPEAYDTDDEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT--NFSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+IL   I    +  T+    +  +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTILQWAIDMANERLTREQKEHIDIAAIPLDDPPSFE 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL +A T AVFQLES+GMK++++  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLLRAETTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      + +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAQYQHESLQPILEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA + G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++KTHY
Sbjct: 719  EMAKQRSTFEDGAKQNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +   L++LPP++N   Y F   + + G   +I 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVTLV-DECENMKLTLLPPDVNSGLYKF--TVNNQG---EIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  ++AI+  R+ G  F +LFDF  R+D K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPVDAILEAREAGGPFKDLFDFCARVDIKRLNKRVIEKLIMSGAMDKLG 892

Query: 892  EK-----RYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKK 944
             +     R +L+AS+  ALK+A++  K   + Q  LF        +    +V+ P ++  
Sbjct: 893  PEQTQSARSILIASLPDALKSADQHNKAEALGQSDLFGLLATEPEEVAAAFVQAPKFTDN 952

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTT 1001
            + L  E++ LG  L+ H    Y +E++ ++   L +L+PT    + T +G++   +    
Sbjct: 953  EWLEGERETLGLYLTGHPINQYRSELKNYVSGRLVDLQPTERDVTSTAAGLVINARTLIN 1012

Query: 1002 YRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             +GK   ++ +DD S  +++ +  + +E  + +L+ N +L++SG V  D F   I + A 
Sbjct: 1013 KKGKRWGLLTLDDKSARIDIRLFPEQFETYQELLQMNNILVISGVVSFDNFSGGITMTAR 1072

Query: 1061 KIFDINVAR 1069
            ++  I   R
Sbjct: 1073 EVASIESVR 1081


>gi|59712554|ref|YP_205330.1| DNA polymerase III subunit alpha [Vibrio fischeri ES114]
 gi|59480655|gb|AAW86442.1| DNA polymerase III alpha subunit [Vibrio fischeri ES114]
          Length = 1159

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1150 (42%), Positives = 723/1150 (62%), Gaps = 32/1150 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++       PA+A+TD +NL G++K+Y +A+  G+K
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGLVKYYFAAHGAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + ++    +   L +L KNN GY  L  L+S+AY          +  EWL  
Sbjct: 64   PIIGADFKVQSQEFGNELFNLTVLAKNNEGYKNLTLLISEAYQRGHVQHTPVMDKEWLVN 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
            +K  +GLI LSG   GD+G A+  G  ++       +   FP+++Y+E+ R  + +    
Sbjct: 124  HK--EGLILLSGGKSGDVGKALLKGNKELVNECVEFYQMHFPEHYYLELTRTGRADEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   NLP+VAT+ ++F+K  +F AHE+R  I +G  L + +R K ++ +Q  +
Sbjct: 182  LHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRRPKLYSDQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFL+ KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGMKIEDFLVKKSQEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  ERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI++V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIEHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPSDPG--MTLAKAFEAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL E    +EEV+ LI++ + +EG  RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 479  PQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPLYCDADGHFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I     +       +  + L D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVRIESISLEDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA K G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV +  +   L++LPP++N S  Y F + E       I 
Sbjct: 779  PAEFMAAVMTADMDNTDKIIGLVDECFR-MKLTVLPPDVN-SGLYRFNVDEKGA----IV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IE I+  R K G F +LFDF  RID K  N+R++  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIENIIEARNKGGHFRDLFDFCARIDTKKTNKRVVEKLIRAGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+AS+D A+K A +  +     Q  +F        +    Y+ VP W +K  L  
Sbjct: 893  PHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPKWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L++   T    + TV+G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++  ++L+ +++++VSG+V  D F   ++++A ++  +
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYADLLETDKIVLVSGQVSFDDFNGGLKMSAREVMSL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
              AR  Y +  SV    +  N    ++   +L       +P  +YY      + ++    
Sbjct: 1073 GDAREKYARGLSVSVTESQINNQFFERFSQILEPNRAGTVPVNVYYQ-RADARVKLVLGT 1131

Query: 1123 NYKVQPIDDL 1132
             ++V P D L
Sbjct: 1132 EWRVTPTDQL 1141


>gi|90413544|ref|ZP_01221535.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK]
 gi|90325476|gb|EAS41959.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK]
          Length = 1158

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1084 (42%), Positives = 704/1084 (64%), Gaps = 29/1084 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL  HS++S++DGL +++ +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PRFIHLHTHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E  + + + L +L  +N+GY  L  L+SKAY+      +  I  EWL +
Sbjct: 64   PIIGADFKVHSEELDNELADLTILAADNDGYQNLTMLISKAYLRGHVQHQPVIDKEWLAQ 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  GLI LSG   GD+G A+  G   +       +   F D+FY+E+ R  +P+ +  
Sbjct: 124  --YSKGLILLSG-RCGDVGKALLKGNKSLVNRCVEFYQTHFEDSFYLELVRTGRPDEDAF 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   + +A+N +LP+VAT+ ++F+   +F AHE+R  I +G  + +  R K ++ +Q  +
Sbjct: 181  IHFAVELAANEDLPVVATNDVRFISAEQFDAHEIRVSIHDGYTIVDPNRPKLYSPQQYLR 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT  +++  DFL+ KS+ GL
Sbjct: 241  TEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GDLSTEDFLVVKSREGL 299

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  +   ++  Y +RL+ E+E I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 300  ERRLAFLFPDEAVRVEKRPEYDERLEIELEVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 359

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 360  GRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDKRDLVIDHVAE 419

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D +SK+IP +PG  +TL+ A + E
Sbjct: 420  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEPG--MTLAKAFEAE 477

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +    +EEV+ LI++ + +EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 478  PQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFSPLYCDAEGANPV 537

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I           +N   +P+ DK +++
Sbjct: 538  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINIASIPMADKKSFD 597

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ + AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 598  MLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 657

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 658  EEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 717

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T YLK HY
Sbjct: 718  EMAKQRTTFEEGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLYLKAHY 777

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV + ++   + +LPP++N   Y F   ++  G    I 
Sbjct: 778  PAEFMAAVMTADMDNTDKIIGLVDECLR-MKIPLLPPDVNKGLYRFN--VDEQG---AIV 831

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  IE ++  R K G F +LFDF  RID K +N+R++  LI SGA D   
Sbjct: 832  YGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSGAMDRLG 891

Query: 892  EKRYMLVASIDVALKNA--EKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++A+++ A+K A      +   Q  +F        +    Y  +P W  K  L  
Sbjct: 892  PNRATMMATLNDAIKAAGQHHQAEAFGQADMFGVLTAAPEEVEQAYANIPEWPDKIWLEG 951

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y +E++ +    L +  PT      +V+G++   ++ TT RG +
Sbjct: 952  ERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAARVMTTKRGTR 1011

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   E+  ++L+++++++VSG+V  D F   ++++A ++ DI
Sbjct: 1012 IGLMTLDDRSGRMEVMLFSDALERYLDLLEKDKIVVVSGQVSFDDFNGGLKMSAREVLDI 1071

Query: 1066 NVAR 1069
            + AR
Sbjct: 1072 SEAR 1075


>gi|260913108|ref|ZP_05919590.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis
            ATCC 43325]
 gi|260632695|gb|EEX50864.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis
            ATCC 43325]
          Length = 1143

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1149 (42%), Positives = 718/1149 (62%), Gaps = 57/1149 (4%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +I+G+ ++  +++A   +   A+ +TD +N  G+++FY  A + GIKPIIG DV + + +
Sbjct: 1    MINGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGIKPIIGADVLVKSAL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEWLEKNKYQDGLIAL 132
               +   L LL KNN GY  +  LLSKAY    +++ Y    I  EWL   ++++GLI L
Sbjct: 61   CGDERFELTLLAKNNTGYQNITLLLSKAYERGYQDLPY----IDQEWL--IEHREGLIIL 114

Query: 133  SGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASN 192
            SG H GD+G  +  G     E+    + + FP++FY+ + R  +      +   I  A  
Sbjct: 115  SGGHNGDVGKKLLKGNQAEIESAVHFYQEYFPEHFYLSLSRTGRHEEERYVSLAIKYAEQ 174

Query: 193  INLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFY 252
              LP+VAT+ + FL++ +F AHE+R  I +   L + KR K +T +Q F+++ EM +LF 
Sbjct: 175  KGLPVVATNDVLFLEEEDFEAHEIRVAIHDSYTLDDPKRPKIYTSQQYFRSEQEMCELFS 234

Query: 253  DIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKD 312
            D+PSA++NT+ IA+RCN+ +  G+  LPKFPT  +++   FL+ KSK GL++RL  L+ D
Sbjct: 235  DVPSALENTLLIAQRCNVTIRLGEYFLPKFPT-GDLSTEAFLVKKSKEGLEERLQVLFPD 293

Query: 313  PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLV 372
             ++ +  +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLV
Sbjct: 294  EKVRQERRSEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLV 353

Query: 373  AYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQI 432
            AY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V + YG+ AVSQI
Sbjct: 354  AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAETYGRGAVSQI 413

Query: 433  VTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNE 492
            +TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A   EPQL     ++
Sbjct: 414  ITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFAAEPQLQVVYDSD 471

Query: 493  EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEE 552
            EEV+ LI++A+++EG+ RN G HAGGV+I+P  + +F PLY        ++ +DK+D+E 
Sbjct: 472  EEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGKHPVTHFDKNDVEY 531

Query: 553  IGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLNDKDTYNLLKKANT 607
             GL+KFDFLGL TL+I+    + +  INT+          ++ +PL+D +++ LLK++ T
Sbjct: 532  AGLVKFDFLGLRTLTIIK---WALDMINTRLAKEGKPLVDISTIPLDDPESFELLKRSET 588

Query: 608  VAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPD 664
             AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP++  +++NF  RKHG E   YPD
Sbjct: 589  TAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGNEPVAYPD 648

Query: 665  PR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            P       K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+GKKK  EM   R+
Sbjct: 649  PEYQHESLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQRE 708

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GAI+ G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA
Sbjct: 709  IFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAA 768

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
             ++  MD+T+KI  L  + ++  GL + PP+IN  K++F     S  ++ +I YG+GAIK
Sbjct: 769  VMTSEMDNTDKIVGLYDECLR-MGLKVAPPDINTGKHHF-----SVNENSEIVYGIGAIK 822

Query: 840  GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            G G+  IEA+++ R + G F +LFD   R+D K INRR   SLI SGAFD     R  L 
Sbjct: 823  GVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSGAFDKLGPHRAALS 882

Query: 899  ASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGF 956
             +++ ALK +++  K   + Q  +F      +      Y   P WS+K  L  E++ LG 
Sbjct: 883  KNLEDALKASDQHAKDEALGQTDMFGVLTERHEDVEKAYASTPRWSEKVILDGERETLGL 942

Query: 957  CLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVID 1012
             LS H    Y  E+  +    L +L P Y     TVSG++   ++  T +G ++ I  +D
Sbjct: 943  YLSSHPISPYIKELEHYSSTRLKDLAPNYRGQLSTVSGLVVASRVAITKKGNRLGIATLD 1002

Query: 1013 DNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILY 1072
            D S  +++ +     EK    L+++ ++IVSG+V  D F   +++   ++  ++ AR  Y
Sbjct: 1003 DRSGRLDITLFGDALEKFGEKLQKDTIVIVSGQVSFDDFSGGLKMTVRELMSLDEARSRY 1062

Query: 1073 GKKFSV---------MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLN 1123
             K  +V         +F R F      K LL       LP  +YY   +  K ++K  + 
Sbjct: 1063 AKALAVCLSEEQITPLFIRQF------KTLLEPHSGGSLPMHVYYSSPRG-KCKVKMGVQ 1115

Query: 1124 YKVQPIDDL 1132
            + + P D+L
Sbjct: 1116 WSINPTDEL 1124


>gi|156975491|ref|YP_001446398.1| DNA polymerase III subunit alpha [Vibrio harveyi ATCC BAA-1116]
 gi|156527085|gb|ABU72171.1| hypothetical protein VIBHAR_03222 [Vibrio harveyi ATCC BAA-1116]
          Length = 1143

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1139 (42%), Positives = 720/1139 (63%), Gaps = 36/1139 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DG+ ++  +++  A    PA+A+TD +NL G++K+Y +A+  G+KPIIG D  + ++ 
Sbjct: 1    MVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVKPIIGADFKMQSDE 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
              ++ ++L LL  NN GY  L  L+SKAY+      +  +   WL   +  +GLI LSGA
Sbjct: 61   FGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWL--AELSEGLIVLSGA 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              G+IG A+  G   + ++    +++ FPD FY+E+ R  +P+    +   I +A  + L
Sbjct: 119  KNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETYLHFAIELAEELEL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ EQ  +T+ EM +LF DIP
Sbjct: 179  PVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLRTEEEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A++N++EIAKRCN+ +  G+  LP FPT + +   DFL+ KS+ GL++RL  L+ D E 
Sbjct: 239  EALENSVEIAKRCNVTVRLGEYFLPAFPT-EGMEETDFLVMKSREGLEERLEFLFPDEEE 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
             K  +  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N+IPVGPGRGSGA SLVAY+
Sbjct: 298  RKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V + YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A K EP L E    +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFKAEPALPELYDADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            ++LI++ + +EG  RN G HAGGV+I+P+ + +F P+Y        ++Q+DK+D+E  GL
Sbjct: 476  KELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVTQFDKNDVETAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFI-KKINTKTTN-FSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I+D  +  I  ++  +  +   +  +PL+D  ++ LL+ + T AVFQL
Sbjct: 536  VKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRLLQNSETTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  F+ GA
Sbjct: 656  SLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRATFEEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
            I  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  IANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV +  +   L++LPP+IN   Y F   ++ +G    I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLVDECFR-MKLTVLPPDINAGLYRFN--VDENG---AIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            I+AI+  R K G F +LFDF  RID K +N+R+I  LI +GA D     R  L+AS++ A
Sbjct: 830  IDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALMASLNDA 889

Query: 905  LKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            +K A +    +   Q  +F    +   +    Y +VP+W +K  L  E++ LG  L+ H 
Sbjct: 890  VKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSV 1018
               Y  E+ +++   L +  PT    S TV+G++   ++ TT RG +I I+ +DD S  +
Sbjct: 950  VNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDDRSGRM 1009

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            EV++ +   ++   +L+++++L+VSG+V  D F   ++++A ++ D+  AR  Y +  SV
Sbjct: 1010 EVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGTAREKYARGLSV 1069

Query: 1079 -----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
                   N  F      +IL   K    +P  +YY      +  +     ++V P D L
Sbjct: 1070 SIDANQINDKF-FEQFTRILEPHKAGT-VPVNVYYQ-RADARARLTLGTEWRVTPTDTL 1125


>gi|153829941|ref|ZP_01982608.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39]
 gi|262161397|ref|ZP_06030507.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1]
 gi|360036121|ref|YP_004937884.1| DNA polymerase III subunit alpha [Vibrio cholerae O1 str.
            2010EL-1786]
 gi|417814272|ref|ZP_12460925.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-49A2]
 gi|417818009|ref|ZP_12464638.1| DNA polymerase III subunit alpha [Vibrio cholerae HCUF01]
 gi|418335254|ref|ZP_12944165.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-06A1]
 gi|418338863|ref|ZP_12947757.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-23A1]
 gi|418346787|ref|ZP_12951545.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-28A1]
 gi|418350549|ref|ZP_12955280.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-43A1]
 gi|418356240|ref|ZP_12958959.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-61A1]
 gi|419827203|ref|ZP_14350702.1| DNA polymerase III, alpha subunit [Vibrio cholerae CP1033(6)]
 gi|419830694|ref|ZP_14354179.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-1A2]
 gi|419834377|ref|ZP_14357832.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-61A2]
 gi|421318090|ref|ZP_15768658.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1032(5)]
 gi|421322001|ref|ZP_15772554.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1038(11)]
 gi|421325803|ref|ZP_15776327.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1041(14)]
 gi|421329461|ref|ZP_15779971.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1042(15)]
 gi|421333417|ref|ZP_15783894.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1046(19)]
 gi|421336959|ref|ZP_15787420.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1048(21)]
 gi|421340387|ref|ZP_15790819.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-20A2]
 gi|421347984|ref|ZP_15798361.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-46A1]
 gi|422897342|ref|ZP_16934786.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-40A1]
 gi|422903540|ref|ZP_16938510.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-48A1]
 gi|422907425|ref|ZP_16942223.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-70A1]
 gi|422914269|ref|ZP_16948774.1| DNA polymerase III subunit alpha [Vibrio cholerae HFU-02]
 gi|422918083|ref|ZP_16952401.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-02A1]
 gi|422923548|ref|ZP_16956695.1| DNA polymerase III subunit alpha [Vibrio cholerae BJG-01]
 gi|422926473|ref|ZP_16959486.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-38A1]
 gi|423145795|ref|ZP_17133389.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-19A1]
 gi|423150471|ref|ZP_17137785.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-21A1]
 gi|423154290|ref|ZP_17141471.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-22A1]
 gi|423157373|ref|ZP_17144466.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-32A1]
 gi|423160944|ref|ZP_17147884.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-33A2]
 gi|423165771|ref|ZP_17152495.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-48B2]
 gi|423731791|ref|ZP_17705094.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-17A1]
 gi|423769076|ref|ZP_17713214.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-50A2]
 gi|423822985|ref|ZP_17716995.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-55C2]
 gi|423856950|ref|ZP_17720802.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-59A1]
 gi|423883578|ref|ZP_17724389.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-60A1]
 gi|423895938|ref|ZP_17727417.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-62A1]
 gi|423931470|ref|ZP_17731810.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-77A1]
 gi|423998508|ref|ZP_17741760.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-02C1]
 gi|424003223|ref|ZP_17746298.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-17A2]
 gi|424007014|ref|ZP_17749984.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-37A1]
 gi|424017405|ref|ZP_17757234.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-55B2]
 gi|424020330|ref|ZP_17760113.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-59B1]
 gi|424024994|ref|ZP_17764644.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-62B1]
 gi|424027880|ref|ZP_17767482.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-69A1]
 gi|424587160|ref|ZP_18026738.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1030(3)]
 gi|424599725|ref|ZP_18038903.1| DNA polymerase III subunit alpha [Vibrio Cholerae CP1044(17)]
 gi|424602486|ref|ZP_18041626.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1047(20)]
 gi|424611237|ref|ZP_18050076.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-39A1]
 gi|424625704|ref|ZP_18064165.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-50A1]
 gi|424637313|ref|ZP_18075321.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-55A1]
 gi|440710484|ref|ZP_20891132.1| DNA polymerase III alpha subunit [Vibrio cholerae 4260B]
 gi|443504591|ref|ZP_21071547.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-64A1]
 gi|443508492|ref|ZP_21075253.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-65A1]
 gi|443512336|ref|ZP_21078971.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-67A1]
 gi|443515890|ref|ZP_21082400.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-68A1]
 gi|443519684|ref|ZP_21086077.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-71A1]
 gi|443524575|ref|ZP_21090785.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-72A2]
 gi|443528206|ref|ZP_21094250.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-78A1]
 gi|443532169|ref|ZP_21098183.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-7A1]
 gi|443535977|ref|ZP_21101848.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-80A1]
 gi|443539510|ref|ZP_21105364.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-81A1]
 gi|449055298|ref|ZP_21733966.1| DNA polymerase III alpha subunit [Vibrio cholerae O1 str. Inaba
            G4222]
 gi|148874576|gb|EDL72711.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39]
 gi|262028708|gb|EEY47362.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1]
 gi|340036758|gb|EGQ97734.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-49A2]
 gi|340037732|gb|EGQ98707.1| DNA polymerase III subunit alpha [Vibrio cholerae HCUF01]
 gi|341620480|gb|EGS46251.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-48A1]
 gi|341620616|gb|EGS46383.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-70A1]
 gi|341621225|gb|EGS46972.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-40A1]
 gi|341636511|gb|EGS61206.1| DNA polymerase III subunit alpha [Vibrio cholerae HFU-02]
 gi|341636965|gb|EGS61659.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-02A1]
 gi|341643837|gb|EGS68099.1| DNA polymerase III subunit alpha [Vibrio cholerae BJG-01]
 gi|341645863|gb|EGS69987.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-38A1]
 gi|356416630|gb|EHH70255.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-06A1]
 gi|356417793|gb|EHH71406.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-21A1]
 gi|356422633|gb|EHH76107.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-19A1]
 gi|356427982|gb|EHH81213.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-22A1]
 gi|356430505|gb|EHH83714.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-23A1]
 gi|356431771|gb|EHH84971.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-28A1]
 gi|356439263|gb|EHH92250.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-32A1]
 gi|356444221|gb|EHH97033.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-33A2]
 gi|356445045|gb|EHH97854.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-43A1]
 gi|356450272|gb|EHI03002.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-48B2]
 gi|356452738|gb|EHI05417.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-61A1]
 gi|356647275|gb|AET27330.1| DNA polymerase III subunit alpha [Vibrio cholerae O1 str.
            2010EL-1786]
 gi|395916348|gb|EJH27178.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1032(5)]
 gi|395917641|gb|EJH28469.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1041(14)]
 gi|395918995|gb|EJH29819.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1038(11)]
 gi|395927995|gb|EJH38758.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1042(15)]
 gi|395928819|gb|EJH39572.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1046(19)]
 gi|395932058|gb|EJH42802.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1048(21)]
 gi|395939670|gb|EJH50352.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-20A2]
 gi|395942563|gb|EJH53239.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-46A1]
 gi|395972508|gb|EJH82098.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1030(3)]
 gi|395975164|gb|EJH84661.1| DNA polymerase III subunit alpha [Vibrio cholerae CP1047(20)]
 gi|408006588|gb|EKG44726.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-39A1]
 gi|408011645|gb|EKG49452.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-50A1]
 gi|408023101|gb|EKG60281.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-55A1]
 gi|408041082|gb|EKG77222.1| DNA polymerase III subunit alpha [Vibrio Cholerae CP1044(17)]
 gi|408607993|gb|EKK81396.1| DNA polymerase III, alpha subunit [Vibrio cholerae CP1033(6)]
 gi|408620467|gb|EKK93479.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-1A2]
 gi|408622834|gb|EKK95801.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-17A1]
 gi|408633353|gb|EKL05714.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-50A2]
 gi|408634961|gb|EKL07196.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-55C2]
 gi|408640297|gb|EKL12093.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-59A1]
 gi|408640644|gb|EKL12432.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-60A1]
 gi|408649199|gb|EKL20516.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-61A2]
 gi|408653697|gb|EKL24852.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-77A1]
 gi|408654640|gb|EKL25775.1| DNA polymerase III, alpha subunit [Vibrio cholerae HC-62A1]
 gi|408844868|gb|EKL84991.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-37A1]
 gi|408845757|gb|EKL85872.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-17A2]
 gi|408852407|gb|EKL92235.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-02C1]
 gi|408859566|gb|EKL99223.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-55B2]
 gi|408866907|gb|EKM06278.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-59B1]
 gi|408869857|gb|EKM09144.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-62B1]
 gi|408878503|gb|EKM17504.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-69A1]
 gi|439973813|gb|ELP50017.1| DNA polymerase III alpha subunit [Vibrio cholerae 4260B]
 gi|443431062|gb|ELS73616.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-64A1]
 gi|443434900|gb|ELS81046.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-65A1]
 gi|443438724|gb|ELS88442.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-67A1]
 gi|443442827|gb|ELS96130.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-68A1]
 gi|443446683|gb|ELT03342.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-71A1]
 gi|443449433|gb|ELT09727.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-72A2]
 gi|443453464|gb|ELT17287.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-78A1]
 gi|443457559|gb|ELT24956.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-7A1]
 gi|443460867|gb|ELT31947.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-80A1]
 gi|443465610|gb|ELT40270.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-81A1]
 gi|448265340|gb|EMB02575.1| DNA polymerase III alpha subunit [Vibrio cholerae O1 str. Inaba
            G4222]
          Length = 1143

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1092 (43%), Positives = 702/1092 (64%), Gaps = 36/1092 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+KPIIG D  + +E 
Sbjct: 1    MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTLQSEE 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + ++L LL KNN GY  L  L+SKAY+      +  I   WL   ++ +GLI LSG 
Sbjct: 61   FGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL--VEHAEGLIVLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              G++G A+  G     E     +   F D+FY+E+ R  + +    +   +++A   +L
Sbjct: 119  KSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  ++++EM +LF DIP
Sbjct: 179  PVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL++RL  L+ DPE+
Sbjct: 239  EALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEERLEFLFPDPEV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V + YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   EP L E    +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAEPALQELYDADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            ++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        ++Q+DK+D+E  GL
Sbjct: 476  KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++  L+ A T AVFQL
Sbjct: 536  VKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  FQ GA
Sbjct: 656  SLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA ++  M
Sbjct: 716  EKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D     R  ++AS+D A
Sbjct: 830  IEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDA 889

Query: 905  LKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            ++ A +    +   Q  +F    +   +    Y +VP W +K  L  E++ LG  L+ H 
Sbjct: 890  VRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSV 1018
               Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +I ++ +DD S  +
Sbjct: 950  VDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRM 1009

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+  AR    +KF+ 
Sbjct: 1010 EVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAR----EKFA- 1064

Query: 1079 MFNRTFNISILK 1090
               R  +ISIL+
Sbjct: 1065 ---RGLSISILQ 1073


>gi|421344490|ref|ZP_15794893.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-43B1]
 gi|421354944|ref|ZP_15805276.1| DNA polymerase III subunit alpha [Vibrio cholerae HE-45]
 gi|395940570|gb|EJH51251.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-43B1]
 gi|395954069|gb|EJH64682.1| DNA polymerase III subunit alpha [Vibrio cholerae HE-45]
          Length = 1143

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1092 (43%), Positives = 701/1092 (64%), Gaps = 36/1092 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+KPIIG D  + +E 
Sbjct: 1    MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTLQSEE 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
                 ++L LL KNN GY  L  L+SKAY+      +  I   WL   ++ +GLI LSG 
Sbjct: 61   FGDDLTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL--VEHAEGLIVLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              G++G A+  G     E     +   F D+FY+E+ R  + +    +   +++A   +L
Sbjct: 119  KSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  ++++EM +LF DIP
Sbjct: 179  PVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL++RL  L+ DPE+
Sbjct: 239  EALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEERLEFLFPDPEV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V + YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   EP L E    +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAEPALQELYDADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            ++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        ++Q+DK+D+E  GL
Sbjct: 476  KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++  L+ A T AVFQL
Sbjct: 536  VKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  FQ GA
Sbjct: 656  SLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA ++  M
Sbjct: 716  EKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D     R  ++AS+D A
Sbjct: 830  IEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDA 889

Query: 905  LKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            ++ A +    +   Q  +F    +   +    Y +VP W +K  L  E++ LG  L+ H 
Sbjct: 890  VRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSV 1018
               Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +I ++ +DD S  +
Sbjct: 950  VDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRM 1009

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+  AR    +KF+ 
Sbjct: 1010 EVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAR----EKFA- 1064

Query: 1079 MFNRTFNISILK 1090
               R  +ISIL+
Sbjct: 1065 ---RGLSISILQ 1073


>gi|392541371|ref|ZP_10288508.1| DNA polymerase III subunit alpha [Pseudoalteromonas piscicida JCM
            20779]
          Length = 1163

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1089 (44%), Positives = 695/1089 (63%), Gaps = 33/1089 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF+HLR+HS++S++DGL +   ++  A     PALAITD  NL G+++FY  A+  GIK
Sbjct: 4    PQFVHLRVHSDFSMVDGLAKTKPIVARAEELAMPALAITDQMNLCGLVRFYGGAHGAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+ ++    +PSR+L+L KNN GY  L  L+S AY+    + R  I  EWL K
Sbjct: 64   PIIGADFWLKSDQFPDEPSRILVLAKNNQGYKNLTLLISDAYLRGHVFHRPVIDKEWLAK 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y++GLI +SGA  GD+G A+  G   + E     + + F D+FYIE+QR  +      
Sbjct: 124  --YKEGLILISGAKDGDLGKAILKGNPKLIEETLAFYEQHFSDHFYIELQRTARAQEEEY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A+  N+P+VAT+ + FL + +F AHE+R  I +G  L +  R K+F+KEQ  K
Sbjct: 182  LHGAVEVAAARNIPVVATNEVVFLHEKDFDAHEIRVAIHDGYTLEDKNRPKRFSKEQYLK 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T  +M +LF DIP A++NT+EIAKRCN+ ++ G   LP +PT  ++ I DFL+  S+ GL
Sbjct: 242  TSEQMQELFSDIPEALENTVEIAKRCNVTVQLGTYFLPDYPT-GDLAIEDFLVKVSRDGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D    K ++  Y  RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301  EERLQFLFPDENDRKEKRGEYDDRLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC + RD VI +V  
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAK 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A   E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPGDPG--MTLAKAFDVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E   ++EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F  LY  E     +
Sbjct: 479  PRLPEAYDSDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDEEGKFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+IL   +    +   + +     +  +PL+D  ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTILQWALDMANERLGRESREPIDIAAIPLDDPASFK 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L  A T AVFQLES+GMK++++  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  VLLDAQTTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      + +L  TYGI++YQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  
Sbjct: 659  EEVSYPDAQYQHESLQPILEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F++GA   G+    A +IF+ +EKF GYGFNKSH+ AYAL+SY T ++KTH+
Sbjct: 719  EMAKQRATFEDGAKDNGVEGELAMKIFDLVEKFVGYGFNKSHSAAYALVSYQTLWMKTHF 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA +S  MD+T+KI  LV D  +   L++LPP++N   Y F     +  +  +I 
Sbjct: 779  PAEFMAAVMSADMDNTDKIVTLV-DECENMKLTLLPPDVNAGVYKF-----TVNRQGEIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  +EAI+  R + G F +LFDF  R+D K +N+R+I  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPVEAILEARAQGGEFKDLFDFCARVDLKRLNKRVIEKLIYAGALDKLG 892

Query: 892  EK-----RYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKK 944
                   R  L+AS+  A+K+AE+  K   + Q  LF        +    ++K    S K
Sbjct: 893  PDRDQPGRATLLASLKDAMKSAEQHHKAESLGQSDLFGLLAVEPEEVEQAFIKATPLSDK 952

Query: 945  QELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTV---SGIITELKLKTT 1001
            + L  EK+ LG  L+ H    Y  E++ +    L +L+P    TV   +G++   +    
Sbjct: 953  EWLNGEKETLGLYLTGHPINQYRKELKYYTSGKLVDLQPGNRDTVATAAGLVINARTLIN 1012

Query: 1002 YRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
             +G +  +I +DD S  ++V +  + +E  + +L+ N++L++SG+V  D F   I + A 
Sbjct: 1013 KKGARWGLITLDDKSARIDVRLFPEQFEMYQEMLQINQILVISGQVSFDNFSGGITMTAR 1072

Query: 1061 KIFDINVAR 1069
            +I  I  AR
Sbjct: 1073 EISTIAQAR 1081


>gi|54310069|ref|YP_131089.1| DNA polymerase III subunit alpha [Photobacterium profundum SS9]
 gi|46914508|emb|CAG21287.1| putative DNA polymerase III, alpha subunit [Photobacterium profundum
            SS9]
          Length = 1158

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1084 (42%), Positives = 704/1084 (64%), Gaps = 29/1084 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS++S++DGL +++ +++  A    PA+A+TD +NL G++KFY +A+  G+K
Sbjct: 4    PRFIHLHIHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +E    + + L +L  +N+GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFKVHSEELENELADLTILATDNDGYQNLTMLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             +Y  GLI LSG   GD+G A+  G   +       +   F D+FY+E+ R  +P+ +  
Sbjct: 122  VQYGKGLILLSG-RCGDVGKALLKGNQLLVNRCLEFYKTHFEDSFYLELVRTGRPDEDAY 180

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   + +A+N +LP+VAT+ ++FL   +F AHE+R  I +G  + +  R K ++ +Q  +
Sbjct: 181  IHFAVELAANEDLPVVATNDVRFLSAEQFDAHEIRVSIHDGYTIVDPNRPKLYSPQQYLR 240

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T+ EM +LF DIP A+ N++EIAKRCN+ +  G+  LP FPT  +++  DFL+ KS+ GL
Sbjct: 241  TEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GDLSTEDFLVVKSREGL 299

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D  +   ++  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 300  ERRLAYLFPDEAVRVEKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP 359

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFDIDFC + RD VI +V +
Sbjct: 360  GRGSGAGSLVAYALDITDLDPLKFDLLFERFLNPERVSMPDFDIDFCMDKRDLVIDHVAE 419

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D +SK+IP +PG  +TL+ A + E
Sbjct: 420  IYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEPG--MTLAKAFEAE 477

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +    +EEV+ LI++ + +EG+ RN G HAGGV+I+P+ + +F PLY        +
Sbjct: 478  PQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFSPLYCDAEGANPV 537

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  I           +N   +P++DK ++ 
Sbjct: 538  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINIASIPMDDKKSFA 597

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L+++ + AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 598  MLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 657

Query: 658  EYFNYPDP-----RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 658  EEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 717

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA+  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T YLK HY
Sbjct: 718  EMAKQRTTFEQGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLYLKAHY 777

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T+KI  LV + ++   + +LPP++N   Y F   ++  G    I 
Sbjct: 778  PAEFMAAVMTADMDNTDKIIGLVDECLR-MKIPLLPPDVNKGLYRFN--VDEQG---AIV 831

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GA+KG G+  IE ++  R K G F +LFDF  RID K +N+R++  LI SGA D   
Sbjct: 832  YGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSGAMDRLG 891

Query: 892  EKRYMLVASIDVALKNA--EKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L+A+++ A+K A      +   Q  +F        +    Y  +P W  K  L  
Sbjct: 892  PNRATLMATLNDAIKAAGQHHHAEAFGQADMFGVLTAAPEEVEQAYANIPEWPDKIWLEG 951

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y +E++ +    L +  PT      +V+G++   ++ TT RG +
Sbjct: 952  ERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAARVMTTKRGTR 1011

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   E+  ++L+++++++VSG+V  D F   ++++A ++ DI
Sbjct: 1012 IGLMTLDDRSGRMEVMLFSDALERYLDLLEKDKIVVVSGQVSFDDFNGGLKMSAREVLDI 1071

Query: 1066 NVAR 1069
            + AR
Sbjct: 1072 SEAR 1075


>gi|389711211|ref|ZP_10187022.1| DNA polymerase III subunit alpha [Acinetobacter sp. HA]
 gi|388610063|gb|EIM39200.1| DNA polymerase III subunit alpha [Acinetobacter sp. HA]
          Length = 1190

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1160 (42%), Positives = 703/1160 (60%), Gaps = 56/1160 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
             F+HL +H+E+SI + ++RI D+++AAAND  PALA+TDLSNL   +KFYK   +KGIKP
Sbjct: 2    HFVHLGIHTEFSITESIVRIPDLVKAAANDEMPALALTDLSNLHAAVKFYKKCLDKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G ++ +     N    R+ LL   N G+  L EL+S+ +I         ++ +W+ K 
Sbjct: 62   ILGSEIRL-----NDAEHRVTLLSMTNKGWRNLTELVSEGFISGQQLDIPCVQKDWILKQ 116

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               D +I L G    D+G  +     D AE   + W + F +  Y+ + R  +PN +  I
Sbjct: 117  --HDDMIVLLGMQ-SDVGKMLITSNPDKAEPLLQEWVEKFGNRVYLALTRTSRPNEDLFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
            ++ + +A   N+ +VA + + FL + +F AHE R CIA+G +L + +R K ++ EQ FK+
Sbjct: 174  EEAVKLAKKYNIGVVAHNDVHFLAREDFEAHEARVCIADGYVLGDNRRPKTYSPEQYFKS 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
             +EM +LF DIP+AI+NT  IA+RCN+ L  G   LP +P P+   I  +     + GL+
Sbjct: 234  SAEMSELFSDIPTAIENTFHIARRCNVTLRLGFNDLPDYPIPEGHTIGSYFTHLCEVGLE 293

Query: 304  KRLLNLYKD-------PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
            +RL  LY         PEI    +  Y +RL FEI+ I+ M F GYFLIV DFIQW+K N
Sbjct: 294  ERLDFLYPPEQRGEDWPEI----RQPYDERLAFEIKIILDMGFPGYFLIVMDFIQWSKGN 349

Query: 357  SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
             +PVGPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRV
Sbjct: 350  GVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRV 409

Query: 417  IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
            I YV   YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISKLIP KP  L +L 
Sbjct: 410  IDYVARTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKLIPTKPLGL-SLE 468

Query: 477  NAIKEEPQLAERIKNE-----EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
             +++ EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP+KL ++  
Sbjct: 469  ESLEAEPQLKDVVTNPSNPDYDDASEIWEMALKLEGITRNTGKHAGGVVIAPTKLTDYSA 528

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            +      T  ++Q+DKDD+E  GL+KFDFLGL  L++++  +  I K         +  +
Sbjct: 529  VMCDADGTARVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAVKNINKRIQSDKPLDIAYI 588

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+DKD Y +  +ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F
Sbjct: 589  PLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDF 648

Query: 652  CRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
              R HG  F Y  P  + VL  TYGIMVYQEQVMQ AQ   GY+LG ADLLRRA+GKKK 
Sbjct: 649  IHRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKP 708

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM++ RK F  GA K  + +  AN IF+ +EKFAGYGFNKSHA AYAL++Y TA+LK H
Sbjct: 709  EEMVKQRKIFIEGAAKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYQTAWLKAH 768

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + F+AA +S  M +T+ +  L+ D  K   L +LPP++N+S Y F    E     K I
Sbjct: 769  YPAEFLAAVMSSEMQNTDNVVFLIDDCRKN-NLEVLPPSVNMSIYQFHATDE-----KTI 822

Query: 832  RYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
             YGLGAIKG G++ +++++  R K G + +LFDF  RID K IN+R + +LI +GA DC 
Sbjct: 823  VYGLGAIKGVGEAAMQSVIESRQKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCL 882

Query: 891  NEKRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
              +R  L+A +  A++ A++ +  +    + LF   +    K       V  WS +  L 
Sbjct: 883  GIERADLMAQLPEAVQAADQARQNRETGIMDLFGEVEEVQRKP---SKPVKPWSDEVRLK 939

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILI 1008
             EK  LG  L+ H   +Y  E++ F+P  ++EL PT    V+ +   L +        ++
Sbjct: 940  GEKDTLGLYLTGHPIDVYRNELKAFVPCQINELTPTRR-GVTTVFAGLVVDVANFPNRMM 998

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            + +DD +  +EV  N++ + + K+I++ ++++++ G++ E            K F +N  
Sbjct: 999  VTLDDGTARIEVSTNHERFNRFKDIVQVDQVVVIEGEIYEREGFDRPMGRLTKAFSLNEI 1058

Query: 1069 R---------ILYGKKFSVMFNRTFNISILKKILLRF---KCKNGLPFVLYYCINKSIKY 1116
            R          L  + +S   +R      L++IL+ +        +P +LY   + +   
Sbjct: 1059 RQKRANSIKITLQAEHYSKTLSRD-----LQQILMPYTNVDMSTHIPVILYLDYDYATT- 1112

Query: 1117 EMKFPLNYKVQPIDDLKLAL 1136
            E+   LN+KV P+D+L + L
Sbjct: 1113 ELHLGLNWKVAPLDELLVKL 1132


>gi|262372309|ref|ZP_06065588.1| DNA polymerase subunit III [Acinetobacter junii SH205]
 gi|262312334|gb|EEY93419.1| DNA polymerase subunit III [Acinetobacter junii SH205]
          Length = 1187

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1153 (42%), Positives = 700/1153 (60%), Gaps = 50/1153 (4%)

Query: 4    QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
            QF+HL +H+E+SI + ++RI D+++AA  +  PALAITDLSNL   +KFY +   KGIKP
Sbjct: 2    QFVHLGIHTEFSITESIVRIPDLVKAAVAEEMPALAITDLSNLHAAVKFYGACLGKGIKP 61

Query: 64   IIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKN 123
            I+G  + +     N    R  LL  +N G+  L E++S+ +IE        ++ EW+ + 
Sbjct: 62   IMGSVIRL-----NDAEHRATLLAMSNTGWRNLTEIVSRGFIEGQQLSVPCVQKEWVLEQ 116

Query: 124  KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQI 183
               + LI L G H  D+G  + +     AE     W   F +  Y+ + R  +      I
Sbjct: 117  A--EDLIILLGQH-SDVGKMLCSSNPQKAEPLLEDWISKFGNRVYLSLTRTDRVGEEDFI 173

Query: 184  QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
             + + +A+   + +VA + I F+++ +F AHE R CIA+G +L + KR K ++ EQ FKT
Sbjct: 174  VEAVKLAAKYQIGVVAHNDIHFIEQDDFYAHEARVCIADGYVLGDDKRPKPYSPEQYFKT 233

Query: 244  QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
              +M +LF DIPSAI+NT +IAKRCN+ L+ G   LP FP P    I+ +    S+ GL+
Sbjct: 234  AEQMSELFSDIPSAIENTYQIAKRCNVALQLGTYFLPDFPIPDGYTIDTYFEHLSREGLE 293

Query: 304  KRLLNLY----KD---PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
            +RL +LY    +D   P+I K     Y +R+++E++ I+KM F GYFLIV DFIQWAKNN
Sbjct: 294  ERLNHLYPIDERDEDWPDIRKP----YDERIKYEVDIILKMGFPGYFLIVMDFIQWAKNN 349

Query: 357  SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
             +PVGPGRGSGA SLVAYSL ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC  GRDRV
Sbjct: 350  GVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRV 409

Query: 417  IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
            I+YV   YG++AVSQI TFGTMAAKGAIRDV RVL   Y   D ISK++P KP   + L 
Sbjct: 410  IEYVAQNYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLK 468

Query: 477  NAIKEEPQLAERIKN-----EEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCP 531
             AI+ EPQL + + N      ++  ++ E+A ++EGI RN G HAGGV+IAP K+ ++  
Sbjct: 469  QAIELEPQLKDIVTNPANPDHDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSA 528

Query: 532  LYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKL 591
            +      T  ++QYDKDD+E  GL+KFDFLGL  L++++  +  I K        ++  +
Sbjct: 529  VICDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSDVPLNIANV 588

Query: 592  PLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF 651
            PL+DKD Y +  +ANT AVFQ ES GMK MLKEA+P  FEEIIA +SLYRPGPMDLI +F
Sbjct: 589  PLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDF 648

Query: 652  CRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
              R HG  F Y  P  + VL  TYGIMVYQEQVMQ AQ   GY+LG ADLLRRA+GKKK 
Sbjct: 649  IHRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKP 708

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM++ R+ F  GA +  + +  AN IF+ +EKFAGYGFNKSHA AYAL++Y+TA+LK H
Sbjct: 709  EEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAH 768

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y + FMAA +S  M +T+ +  L+ D  +   L +LPP++N+S Y+F  I E     + I
Sbjct: 769  YPAEFMAAVMSSEMQNTDSVVFLIDDC-RNNKLEVLPPSVNMSLYHFHAIDE-----RTI 822

Query: 832  RYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
             YGLGAIKG G+  +++++  R K G + +LFDF  RID K IN+R + +LI +GA DC 
Sbjct: 823  VYGLGAIKGVGEQAMQSVIDSRIKDGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCL 882

Query: 891  NEKRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
              +R  L+A +  A++ AE+ +  +    + LF   +    K       V  WS +  L 
Sbjct: 883  GIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKP---AKPVKPWSDEVRLK 939

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILI 1008
             EK  LG  L+ H   +Y +E++ FIP  L+E+ PT    V+ +   L L        ++
Sbjct: 940  GEKDTLGLYLTGHPIDVYRSELKAFIPAKLNEVTPTRR-GVTTVFAGLVLDVANFPNRIM 998

Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
            I +DD +  +EV  N++ +++ K+I++  +++++ G++ E            K F +N  
Sbjct: 999  ITLDDGTARIEVSCNHERFQRYKDIVRLEQVIVIEGEIYEREGFDRPMARLSKAFSLNEI 1058

Query: 1069 RILYGKKFSVMFNRTFNISILKK----ILLRF----KCKNGLPFVLYYCINKSIK-YEMK 1119
            R    +   +          L K    ILL +     C++     +   I++S    E+ 
Sbjct: 1059 RQKRAQSIQIRMPHDLMTKSLAKDMQNILLPYCNVDMCQH---IGIQLLIDQSFATAELH 1115

Query: 1120 FPLNYKVQPIDDL 1132
                +KV P+D+L
Sbjct: 1116 LGAQWKVAPLDEL 1128


>gi|429732596|ref|ZP_19267199.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans Y4]
 gi|429155719|gb|EKX98376.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans Y4]
          Length = 1142

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1150 (42%), Positives = 719/1150 (62%), Gaps = 45/1150 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +IDG+ ++  +++A   +   A+ +TD +N  G+++FY  A + G+KPIIG DV + + +
Sbjct: 1    MIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVKPIIGTDVLVQSAL 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE---IRIEWLEKNKYQDGLIAL 132
               +  RL LL KNN GY  +  LLSKAY      G A+   I  +WL +++   G I L
Sbjct: 61   CGDEKFRLTLLAKNNEGYKNITLLLSKAY----ERGYADLPYIDQQWLVEHRA--GGIVL 114

Query: 133  SGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASN 192
            SG   GD+G  +     D  ++    + + FPD+FY+ + R  +P+    I+  + +A  
Sbjct: 115  SGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLTRTGRPDEERYIKVALELAEQ 174

Query: 193  INLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFY 252
              LP+VAT+ + FL+  +F AHE+R  I +G  L + KR K +T +Q F+++ EM  LF 
Sbjct: 175  QQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRPKLYTSQQYFRSEQEMCDLFA 234

Query: 253  DIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKD 312
            D+PSA++NT+ IA+RCN+ +  G+  LP+FPT  +++  D+L+ ++K GL++RL  ++ D
Sbjct: 235  DVPSALENTVLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDYLVKRAKDGLEERLKVMFPD 293

Query: 313  PEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLV 372
             ++    +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLV
Sbjct: 294  EKVRTERRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLV 353

Query: 373  AYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQI 432
            AY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +V + YG  AVSQI
Sbjct: 354  AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHVAEMYGHGAVSQI 413

Query: 433  VTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNE 492
            +TFGTMAAK  IRDVGRVL   Y F D ISKL+P  PG  +TL+ A + EP+L E    +
Sbjct: 414  ITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPDPG--MTLAKAFEAEPKLQEIYDAD 471

Query: 493  EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEE 552
            EEVR +I++A+++EG+ RN G HAGGV+I+P+ + +F PLY        ++ +DK+D+E 
Sbjct: 472  EEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDSEGKHPVTHFDKNDVEY 531

Query: 553  IGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAV 610
             GL+KFDFLGL TL+I+   +  I     K       +N +PL+D+ ++++L  A T AV
Sbjct: 532  AGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVDINAIPLDDQQSFDVLLNAETTAV 591

Query: 611  FQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDP-- 665
            FQLES+GMK+++K  KPD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD   
Sbjct: 592  FQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEVSYPDANY 651

Query: 666  ---RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQ 722
                 K +L  TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK  EM + R  F+
Sbjct: 652  QHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAKQRSVFE 711

Query: 723  NGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLS 782
             GA+K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++
Sbjct: 712  EGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT 771

Query: 783  LSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTG 842
              MD+T+KI  L  + ++  GL ++PP+IN  K++F     S  ++ +I YG+GAIKG G
Sbjct: 772  SEMDNTDKIVGLYDECMR-MGLKVVPPDINTGKHHF-----SVNENGEIVYGIGAIKGVG 825

Query: 843  KSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
            +  I A+V  R K G F NLFD   R+D K INRR   SLI SGAFD     R  L  ++
Sbjct: 826  EGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKSGAFDKLGPHRAALQQNL 885

Query: 902  DVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            + AL+ +++  K   + Q+ +F      N +   +Y  +  W++K  L  E++ LG  LS
Sbjct: 886  EDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPWTEKTILDGERETLGLYLS 945

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNS 1015
             H    Y  E+  + P+ L EL P Y     T SG++   ++  T +G  I I  IDD S
Sbjct: 946  SHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVMSTRVAVTKKGNHIGIATIDDRS 1005

Query: 1016 NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKK 1075
              +++ +  +  EK    L+++ +++VSG+V  D F + +R++   +  I+ AR  Y K 
Sbjct: 1006 GRLDLTLFGEALEKFGEKLQKDTVIVVSGQVSFDDFSQGLRMSVRDLMTIDEARARYAKS 1065

Query: 1076 FSVMFNRTFNISILKKILLRFK------CKNGLPFVLYYCINKSIKYEMKFPLNYKVQPI 1129
             ++  ++     I  + + +FK        N LP  +YY   +  +  +K  + + V P 
Sbjct: 1066 LAICLSQE---QITPQFIKQFKSILQPYSGNSLPVHIYYQSPQG-RALVKMGVQWSVNPT 1121

Query: 1130 DDLKLALINL 1139
            D+L   L  L
Sbjct: 1122 DELLTELAAL 1131


>gi|119946582|ref|YP_944262.1| DNA polymerase III subunit alpha [Psychromonas ingrahamii 37]
 gi|119865186|gb|ABM04663.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37]
          Length = 1173

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1161 (43%), Positives = 731/1161 (62%), Gaps = 39/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS+YS++DG+ +I  ++  AA    PALAIT+ +N  G++KFY +A++ GIK
Sbjct: 14   PKFIHLRVHSDYSMVDGVTKIKPLVAKAAALNMPALAITEQTNFCGLVKFYGAAHDAGIK 73

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI+G D W+ +E+   +  R+  L  NN GY  L EL+SKAY+     GRA I  +WL +
Sbjct: 74   PIVGVDFWVKSELLADEQFRITALAMNNAGYKNLTELISKAYLRGHVGGRAVIDQDWLAE 133

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  G+I LSG   GD+G  +  G +++A    + + + F   +YIE+ R  + N    
Sbjct: 134  --HNQGIILLSGGKDGDLGKVLLKGNHELAVEIIQFYQQYFAQRYYIELIRTNRLNEETY 191

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   ++ A    LP+VAT+ + F  K  + AHE+R CI +G  L + +R K+++ EQ  +
Sbjct: 192  LHYALDWAEKYQLPVVATNEVVFADKALYDAHEIRVCINQGYTLGDNRRPKQYSDEQYLR 251

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +Q EM +LF DIP A++N++EIAKRCN+ L  G+  LP FPT  +++I D+    S+ GL
Sbjct: 252  SQEEMCELFADIPEALKNSVEIAKRCNVTLRLGEYFLPDFPT-GDMSITDYFCDVSRKGL 310

Query: 303  KKRLLNLY-KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
            + RL  L+ K+   +   +  Y +RLQ E++ I  M F GYFLIV +FIQW+K+N IPVG
Sbjct: 311  EDRLAILFDKNAPEFADIRAPYDQRLQIELDVINTMGFPGYFLIVMEFIQWSKDNKIPVG 370

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L ITD+DPL   LLFERFLNP R+SMPDFDIDFC + RD VI +V 
Sbjct: 371  PGRGSGAGSLVAYALKITDLDPLELELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVA 430

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
            + YG+DAVSQI+TFGTMA+K  IRDVGRVL   Y F D ISKLIP  PG  +TLS A  E
Sbjct: 431  ELYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDGISKLIPPTPG--MTLSKAFAE 488

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EP+L ER    EEVR LI++ + +EG IRN G HAGGV+I+P+ + +F PLY  E     
Sbjct: 489  EPRLQERYDGSEEVRALIDMCRTLEGTIRNAGKHAGGVVISPTTITDFSPLYCDELGNNP 548

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI---KKINTKTTNFSLNKLPLNDKDT 598
            ++Q+DK+D+E  GL+KFDFLGL TL+I+   +      K    + T F + K+ L +   
Sbjct: 549  VTQFDKNDVETAGLVKFDFLGLRTLTIVQWALDMANAHKHARGEETLF-IEKICLTEPAC 607

Query: 599  YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKH 656
            + LLK+  T AVFQLES+GMK++++  +PD FE++IAL++L+RPGP+   ++ NF  RKH
Sbjct: 608  FELLKRYETTAVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKH 667

Query: 657  G-EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
            G E  ++PD     P  +++L+ TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 668  GREAVSFPDEKWQHPSLEEILAPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 727

Query: 711  TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
              EM + R+ F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++KT
Sbjct: 728  PEEMAKQRETFEQGAIDNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKT 787

Query: 771  HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
             Y S+FMAA +S  MD+T KI  LV +  ++ GL + PP++N   + F   ++ D    +
Sbjct: 788  FYPSYFMAAVMSADMDNTEKIVTLVAEC-QSMGLDLGPPDVNEGLFKFN--VDPD---LR 841

Query: 831  IRYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
            I YG+GA+KG G+  ++AI+  R  G  F +LFDF  RID K+ N+RI+  LI +GA D 
Sbjct: 842  IIYGIGAVKGVGEGPVDAIIEARTAGGKFIDLFDFCNRIDLKHCNKRILEKLILAGALDK 901

Query: 890  FNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
                R  L+ ++  ALK+A + KK     Q  LF     ++ +    +  V  W +KQ L
Sbjct: 902  LGPHRAALMETLPNALKSALQHKKAESFGQSDLFGVLTTDSEEIADKFSSVDKWPEKQWL 961

Query: 948  IEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL---KPTYSCTVSGIITELKLKTTYRG 1004
              EK+ LG  L+ H    YET+IR F  + LS+L   +   +  V+G+I  +++  T  G
Sbjct: 962  AGEKETLGLYLTGHPINQYETDIRAFHCLKLSDLVANRRGQNSRVAGLILSMRIMVTKAG 1021

Query: 1005 KIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
            K + II +DD S  +E+ +   L ++ +++L  + ++++ G+V ED F   +++NA ++ 
Sbjct: 1022 KRMGIITLDDKSARMEITVFADLLDQYEDLLVADNVIVLQGQVSEDYFNGGLKMNAREVM 1081

Query: 1064 DINVARILYGKKFSVMFNRTFNIS-----ILKKILLRFKCKNGLPFVLYYCINKSIKYEM 1118
             I  AR  +  K  +  N   NI      +LK+ L+    K GL  V     N   + E+
Sbjct: 1082 SIEQARERFASKLRLKVNSD-NIDADFQRLLKEALV--PAKGGLCPVYIEYTNSLAQTEL 1138

Query: 1119 KFPLNYKVQPIDDLKLALINL 1139
                 + + P DDL  +L  L
Sbjct: 1139 VLARQWSITPSDDLLFSLSRL 1159


>gi|86146874|ref|ZP_01065193.1| DNA polymerase III subunit alpha [Vibrio sp. MED222]
 gi|218710303|ref|YP_002417924.1| DNA polymerase III subunit alpha [Vibrio splendidus LGP32]
 gi|85835326|gb|EAQ53465.1| DNA polymerase III subunit alpha [Vibrio sp. MED222]
 gi|218323322|emb|CAV19499.1| DNA polymerase III alpha subunit [Vibrio splendidus LGP32]
          Length = 1159

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1151 (41%), Positives = 725/1151 (62%), Gaps = 34/1151 (2%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS++S++DGL ++  +++  A    PALA+TD +NL G++KFY +A+  G+K
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + +     + ++L ++  +N GY  L  L+SKAY+      +  I  EWL  
Sbjct: 64   PIIGADFLMQSPDFGDELTKLTVIATSNKGYNNLTLLISKAYLRGHVQHQPVIDKEWL-- 121

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             ++ +GLI LSGA  G+IG A+  G  ++  +    +   F D FY+E+ R  + +    
Sbjct: 122  IEHAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLELIRTGRTDEESY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A   +LP+VAT+ + F+ +  F AHE+R  I +G  + + +R K ++ +Q  +
Sbjct: 182  LHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDPRRPKNYSPQQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A++N++EIAKRCN+ +  G+  LP FPT + + I DFLI KS+ GL
Sbjct: 242  SEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPT-EGLAIEDFLIKKSEEGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D ++    +  Y +RL+ E+E +  M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301  ERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI +V +
Sbjct: 361  GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   E
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFLAE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P L E    +EEVR+LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        +
Sbjct: 479  PALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
            +Q+DK+D+E  GL+KFDFLGL TL+I+D  +  +     K       +  +PL+D+ ++N
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLAKEGKDPVRIESIPLDDQASFN 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+ + T AVFQLES+GMK+++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD        K+ L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK  
Sbjct: 659  EAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GA   G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719  EMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA ++  MD+T K+  LV +  +   L +LPP+IN   Y F   ++ DG    I 
Sbjct: 779  PAEFMAAVMTADMDNTEKVIGLVDECFR-MKLKLLPPDINSGLYRFN--VDEDG---AIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  IEAI+  R K G+F +LFDF  R+D K +N+R+I  LI SGA D   
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKLILSGALDRLG 892

Query: 892  EKRYMLVASIDVALKNAEKTK--KFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  ++AS+  A+K A +    +   Q  +F    +   +    Y +VP W +K  L  
Sbjct: 893  PHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVPKWPEKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E+ ++    L +  PT    S T++G++   ++ TT RG +
Sbjct: 953  ERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARVMTTKRGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            I ++ +DD S  +EV++ +   ++   +L+++++++VSG+V  D F   ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLFSDALDRYAELLEKDKIVVVSGQVSFDDFNGGLKMSAREVMDL 1072

Query: 1066 NVARILYGKKFSVMFNRT-FNISILKK---ILLRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
              AR  Y +  S+   ++  N    ++   IL  ++    +P  +YY      +  +   
Sbjct: 1073 GSAREKYARGVSISIEQSQINGQFFERFGQILEPYRAGT-VPVNVYYQ-RADARARLTLG 1130

Query: 1122 LNYKVQPIDDL 1132
              ++V P D L
Sbjct: 1131 TEWRVTPSDTL 1141


>gi|359298678|ref|ZP_09184517.1| DNA polymerase III subunit alpha [Haemophilus [parainfluenzae] CCUG
            13788]
          Length = 1157

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1172 (41%), Positives = 740/1172 (63%), Gaps = 52/1172 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HL++HS++S+I+GL ++  +++ A N    A+A+TD +N  G++KFY  + + G+K
Sbjct: 4    PRFVHLQVHSDFSMINGLAKVKPLVKTAVNQQMVAMALTDFTNFCGLVKFYGESLSSGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRI---EW 119
            PIIG D+++    ++++   L LL KN+ GY  +  LLS+AY      G  E  I    W
Sbjct: 64   PIIGADIYMRANPDSEEIFELTLLAKNDTGYHNITLLLSQAY----QQGYMEFPIVEKAW 119

Query: 120  L-EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178
            L E+N   +G+I LSG   GD+G ++       AE     +   FP ++Y  + R  + +
Sbjct: 120  LAERN---EGIIVLSGGRNGDVGKSLLKENEAEAEELLAFYQTHFPHHYYFSVCRTGRTD 176

Query: 179  MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
                IQ  +  +    +P+VA + + FLK+ +F AHE+R  I +   L + +R KK++ +
Sbjct: 177  EERYIQAVVPFSQKHQIPLVAVNDVMFLKEDDFDAHEIRVAIHDSYTLDDPRRPKKYSAQ 236

Query: 239  QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
            Q F+++ EM  LF D+P A++N+++IAKRCN+ +  G+  LP FPT   ++  DFL+ KS
Sbjct: 237  QYFRSEEEMCALFADLPQAVENSVQIAKRCNVNVRLGEYFLPNFPT-GELSTADFLVKKS 295

Query: 299  KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
            K GL++RL  L+ DP+    ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N I
Sbjct: 296  KEGLEERLEFLFPDPKERADKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGI 355

Query: 359  PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
            PVGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRD+VI+
Sbjct: 356  PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDQVIE 415

Query: 419  YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
            +V D YG+ AVSQI+TFGTMAAK  IRDVGRV    YSF D ISKLIP  PG  +TLS A
Sbjct: 416  HVADTYGRQAVSQIITFGTMAAKAVIRDVGRVFGHPYSFVDRISKLIPPDPG--MTLSKA 473

Query: 479  IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY-KQEG 537
             + EP+L E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY   EG
Sbjct: 474  FEAEPKLGELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEG 533

Query: 538  MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLP 592
            M   ++ +DK+D+E  GL+KFDFLGL TL+I+    + ++ IN +          +  +P
Sbjct: 534  MHP-VTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALEMINARLAREGKPLVRIESIP 589

Query: 593  LNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKN 650
            L+D+ ++ LL +A T AVFQLES+GMK+++   KPD FE+IIAL++L+RPGP++  +++N
Sbjct: 590  LDDEKSFKLLLEAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQN 649

Query: 651  FCRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRR 704
            F  RKHG E  +YPD +      K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRR
Sbjct: 650  FIDRKHGIEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRR 709

Query: 705  AIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYY 764
            A+GKKK  EM   R+ F+ GAI  G+  + A +IF+ +EKFAGYGFNKSH+ AYAL+SY 
Sbjct: 710  AMGKKKPEEMAAQREIFEKGAINKGIDGNLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 769

Query: 765  TAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIES 824
            T +LK HY + FMAA ++  MD+T+KI + + D     GL+I+PP++N  K+ F     S
Sbjct: 770  TLWLKAHYPAEFMAAVMTSEMDNTDKI-VSLYDECMNMGLTIVPPDVNTGKHRF-----S 823

Query: 825  DGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINS 884
              +  +I YGLGAIKG G+  IEA++  R+ G F +LFD T R+D K INRR   +LI S
Sbjct: 824  VNEKGEIVYGLGAIKGVGEGPIEALLEARQDGIFKDLFDLTARVDLKKINRRTFEALIMS 883

Query: 885  GAFDCFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWS 942
            GAFD     R  L+ +++ ALK +++  K   + Q  +F        +    Y   P  S
Sbjct: 884  GAFDKLGPHRAALLKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQDAYANTPKLS 943

Query: 943  KKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLK 999
            ++  L  E+  LG  LS H    +  E+  + PI L+EL+PT      TV+GII   ++ 
Sbjct: 944  EQVILEGERNTLGLYLSGHPIGRFLKELSHYAPIRLNELQPTRRGQMVTVAGIIVNARIA 1003

Query: 1000 TTYRGKIL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRIN 1058
            TT RG  L I  I+D S  +++ + ++  E    +L++++++I +G +  D F   ++++
Sbjct: 1004 TTKRGSRLGIGTIEDRSGKLDITLFSEALETYGALLQKDQIVIATGSIQFDDFSGGLKMS 1063

Query: 1059 AEKIFDINVARILYGKKFSV-----MFNRTFNISILKKILLRFKCKNGLPFVLYYCINKS 1113
              ++  ++ +R  + K  ++       +  F I  L  I+  +K    LP   YY  + +
Sbjct: 1064 VRELSTLDESRARHAKSLALAIQAEQLSDGF-IKSLNTIITPYKAGT-LPLNFYYQ-SPA 1120

Query: 1114 IKYEMKFPLNYKVQPIDDLKLALINLGLYNAI 1145
             +  ++  + ++V P +++   L  L   NA+
Sbjct: 1121 GRVLLRGGVEWRVTPKEEMLTELKGLLGENAV 1152


>gi|87118611|ref|ZP_01074510.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
 gi|86166245|gb|EAQ67511.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
          Length = 1136

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1130 (43%), Positives = 712/1130 (63%), Gaps = 38/1130 (3%)

Query: 26   VIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLL 85
            ++ A A    PA+A+TD +NL G ++FYK A   GIKPI G DV I  + E ++  RL L
Sbjct: 4    LLGATAGLNMPAVAMTDENNLCGFVRFYKGAMGSGIKPICGADVVIEADGELEENHRLTL 63

Query: 86   LVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQ 145
            L   N GY  + E++SK Y      GR  ++  W+E   +Q+ +I +SGA  GD+G  + 
Sbjct: 64   LAMTNKGYKNIIEVISKGYQLGQFEGRPIVQRAWVEA--HQEDVILISGAQYGDVGQYLA 121

Query: 146  NGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQF 205
              +  +A+    RW +IFP+ FY+E+QR  +      I   + +A+ +  P+VAT+ ++F
Sbjct: 122  LQKPTLAKQKLERWMQIFPNRFYVELQRTSRIGEEDYIHAVVPLATELACPVVATNDVRF 181

Query: 206  LKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIA 265
            LK+ +F +HE R CI +G  L + +R K++++EQ  K+  EM  LF DIP A++NT+EIA
Sbjct: 182  LKREDFESHEARVCIHDGVTLDDPRRKKRYSEEQYLKSADEMQALFDDIPEALENTVEIA 241

Query: 266  KRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKR---LLNLYKDPEIYKCEKLR 322
            KRCN+ +  GK  LP FP P+ + ++ F    S  GL++R   L+  Y D    K  K  
Sbjct: 242  KRCNVDVLLGKYFLPDFPVPEGMTMDVFFSELSFKGLEERFDFLVKKYGDRIADK--KQE 299

Query: 323  YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDID 382
            Y  RL FE+  I +M F GYFLIV DFIQWAK+N IPVGPGRGSGA SLVAY+L ITD+D
Sbjct: 300  YWDRLDFELNIINQMGFPGYFLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLD 359

Query: 383  PLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKG 442
            PL Y+LLFERFLNP R+SMPDFDIDFC + RD+VI YV   YG+DAVSQI+TFG MAAK 
Sbjct: 360  PLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIDYVAQTYGRDAVSQIITFGAMAAKA 419

Query: 443  AIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELA 502
             +RDV RV    YS  D +SKLIPF+ G  +TL+ A++EEP L E I+N+EE   ++E+A
Sbjct: 420  VVRDVARVQGKPYSLGDKLSKLIPFEIG--MTLNKALEEEPMLKEFIENDEEAGDVMEMA 477

Query: 503  KQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLG 562
              +EG++RN G HAGGV+IAP+KL +F PLY +E  +G+++QYDK+D+EE GL+KFDFLG
Sbjct: 478  LSLEGVVRNFGKHAGGVVIAPTKLTDFSPLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLG 537

Query: 563  LTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYNLLKKANTVAVFQLESQGMKN 620
            L TL+++D  +  I  I  +    +L+   + L DK TY++L++A T AVFQLES+GMK 
Sbjct: 538  LKTLTVVDWAMKNINDIQAREGKPALDITLIDLEDKPTYDMLQRAETTAVFQLESRGMKE 597

Query: 621  MLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHGE---YFNYPDPRTKD---VLS 672
            ++K+  P  FE+I+AL++LYRPGP+   ++ +F  RKHG     F +PD +  D   VL 
Sbjct: 598  LIKKLLPSRFEDIVALVALYRPGPLGSGMVDDFINRKHGRSELAFPHPDYQHDDLIPVLE 657

Query: 673  ETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSK 732
             TYGI++YQEQVMQIAQ+L  +SLG ADLLRRA+GKKK   M E R  F  GA KY +S+
Sbjct: 658  PTYGIILYQEQVMQIAQVLARFSLGGADLLRRAMGKKKPEVMAEQRLLFMEGAGKYDISE 717

Query: 733  HKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIK 792
              +  IF+ +EKFAGYGFNKSH+ AYAL+SY TA+LK HY + FMAA LS  M +T+KI 
Sbjct: 718  ELSGNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKHHYPAPFMAAVLSADMQNTDKIV 777

Query: 793  ILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTE 852
            I +++  +   L +  PN+N S Y F     +  +   I YGLGAIKG G+  IEAI   
Sbjct: 778  IFIEEC-RAMKLQLELPNVNESVYKF-----TVNRAGAIVYGLGAIKGVGEGPIEAITQA 831

Query: 853  RKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTK 912
            R+ G F ++FDF KRI KK +N+R++ +LI SGA D     R  L ASID ALK A++  
Sbjct: 832  REEGPFEHIFDFCKRIGKK-VNKRVMEALIRSGALDQIGPNRATLFASIDEALKRADRIA 890

Query: 913  K--FINQLSLFKNDDNNNLKEYLNYVKVP-SWSKKQELIEEKKVLGFCLSEHIFCIYETE 969
            K      + LF      + +   + + +   W  +Q L  EK  LG  ++ H    YE E
Sbjct: 891  KDEDAGMMDLFGVAVEESTEGAYDEIGIQHEWPSRQRLDGEKDTLGLYVTGHPIDDYEKE 950

Query: 970  IRQFIPIYLSELKPTY--SCTVSGIITELKL-KTTYRGKILIIVIDDNSNSVEVIINNQL 1026
            IR+F    + +L+P    S  ++G+I E+++ K+   G I  + +DD S  +EV +    
Sbjct: 951  IRRFARSRIVDLQPKRGDSQIMAGLIVEMRITKSKKGGNIAFVTLDDRSARIEVTVFPDS 1010

Query: 1027 YEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN----R 1082
            +E+ K++++++++++V G++  D F    ++ A K+ DI  ARI Y +   + +      
Sbjct: 1011 FEEFKDVIQKDQVVVVEGEISNDEFRGGQKVIARKVMDIAQARIRYVQALRIDWQSDTVS 1070

Query: 1083 TFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDL 1132
              +I  L + L  ++  +G   V+ +  + + + ++    ++K+ P D L
Sbjct: 1071 CVDIQTLSQFLQPYR-GDGCDVVVSFATDHA-EGDICLGQSWKIMPDDQL 1118


>gi|424660747|ref|ZP_18097994.1| DNA polymerase III subunit alpha [Vibrio cholerae HE-16]
 gi|408050120|gb|EKG85293.1| DNA polymerase III subunit alpha [Vibrio cholerae HE-16]
          Length = 1143

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1092 (43%), Positives = 702/1092 (64%), Gaps = 36/1092 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+KPIIG D  + +E 
Sbjct: 1    MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTLQSEE 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + ++L LL KNN GY  L  L+SKAY+      +  I   WL   ++ +GLI LSG 
Sbjct: 61   FGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL--VEHAEGLIVLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              G++G A+  G     E     +   F D+FY+E+ R  + +    +   +++A   +L
Sbjct: 119  KSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  ++++EM +LF DIP
Sbjct: 179  PVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL++RL  L+ DPE+
Sbjct: 239  EALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEERLEFLFPDPEV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V + YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   EP L E    +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAEPALQELYDADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            ++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        ++Q+DK+D+E  GL
Sbjct: 476  KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++  L+ + T AVFQL
Sbjct: 536  VKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPIRIEAIPLDDARSFRNLQDSKTTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  FQ GA
Sbjct: 656  SLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA ++  M
Sbjct: 716  EKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D     R  ++AS+D A
Sbjct: 830  IEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDA 889

Query: 905  LKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            ++ A +    +   Q  +F    +   +    Y +VP W +K  L  E++ LG  L+ H 
Sbjct: 890  VRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSV 1018
               Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +I ++ +DD S  +
Sbjct: 950  VDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRM 1009

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+  AR    +KF+ 
Sbjct: 1010 EVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAR----EKFA- 1064

Query: 1079 MFNRTFNISILK 1090
               R  +ISIL+
Sbjct: 1065 ---RGLSISILQ 1073


>gi|417821576|ref|ZP_12468190.1| DNA polymerase III subunit alpha [Vibrio cholerae HE39]
 gi|423957551|ref|ZP_17735294.1| DNA polymerase III, alpha subunit [Vibrio cholerae HE-40]
 gi|340039207|gb|EGR00182.1| DNA polymerase III subunit alpha [Vibrio cholerae HE39]
 gi|408656619|gb|EKL27713.1| DNA polymerase III, alpha subunit [Vibrio cholerae HE-40]
          Length = 1143

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1092 (43%), Positives = 701/1092 (64%), Gaps = 36/1092 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+KPIIG D  + +E 
Sbjct: 1    MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTLQSEE 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + ++L LL KNN GY  L  L+SKAY+      +  I   WL   ++ +GLI LSG 
Sbjct: 61   FGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL--VEHAEGLIVLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              G++G A+  G     E     +   F D+FY+E+ R  + +    +   +++A   +L
Sbjct: 119  KSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  ++++EM +LF DIP
Sbjct: 179  PVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL++RL  L+ DPE+
Sbjct: 239  EALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEERLEFLFPDPEV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RLQ E+  I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RAKRRPEYDERLQVELNVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V + YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   EP L E    +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAEPALQELYNADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            ++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        ++Q+DK+D+E  GL
Sbjct: 476  KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++  L+ A T AVFQL
Sbjct: 536  VKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  FQ GA
Sbjct: 656  SLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY + FMAA ++  M
Sbjct: 716  EKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D     R  ++AS+D A
Sbjct: 830  IEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDA 889

Query: 905  LKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            ++ A +    +   Q  +F    +   +    Y +VP W +K  L  E++ LG  L+ H 
Sbjct: 890  VRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSV 1018
               Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +I ++ +DD S  +
Sbjct: 950  VDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRM 1009

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+  AR    +KF+ 
Sbjct: 1010 EVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAR----EKFA- 1064

Query: 1079 MFNRTFNISILK 1090
               R  +ISIL+
Sbjct: 1065 ---RGLSISILQ 1073


>gi|90407915|ref|ZP_01216090.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3]
 gi|90311006|gb|EAS39116.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3]
          Length = 1170

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1169 (42%), Positives = 724/1169 (61%), Gaps = 55/1169 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHLR+HS++S++DGL ++  +I   A    PA+A+TD +N  G++KFY +A++ G+K
Sbjct: 10   PKFIHLRVHSDFSMVDGLTKVKALIANTAAMNMPAIALTDQTNFCGLVKFYTAAHSAGVK 69

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            P++G D W+ +EI  K+  R+  L  +N GY  + EL+SKAY      GRA +  +WL++
Sbjct: 70   PLVGVDFWVQSEILEKEQFRITALAMDNEGYKNITELISKAYFRGHVGGRAILDQDWLKE 129

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              Y  G+I LSGA  GD+G  +  G  ++A    + +   FP  +Y+E+ R  +      
Sbjct: 130  --YNHGIILLSGAKEGDLGKMLLKGHFELASEITQFYQTYFPQRYYLELIRTGRVKEETY 187

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            I   +  A    LP+VAT+ + F  KT F AH +R CI +G  L + +R   +++EQ  +
Sbjct: 188  IHHALEWAEKHQLPVVATNQVVFSNKTLFDAHVIRVCINQGYTLGDERRPHDYSEEQYLR 247

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            +  EM +LF DIP A+QN++EIAKRCN+ L  G+  LP FPT +   IND+ I  S+ GL
Sbjct: 248  SPEEMCELFSDIPEALQNSVEIAKRCNVTLRLGECFLPDFPT-QGKPINDYFIEVSRQGL 306

Query: 303  KKRLLNLY-KDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVG 361
              RL  L+ K+   +   +  Y +RL+ E+E I  M F GYFLIV +FIQW+K+N IPVG
Sbjct: 307  NARLEFLFDKNSADFAQIRAPYDERLRIELEVINSMGFPGYFLIVMEFIQWSKDNGIPVG 366

Query: 362  PGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVK 421
            PGRGSGA SLVAY+L+ITD+DPL  +LLFERFLNP R+SMPDFDIDFC E RD VI +V 
Sbjct: 367  PGRGSGAGSLVAYALNITDLDPLKLDLLFERFLNPERVSMPDFDIDFCMERRDEVIDHVA 426

Query: 422  DRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKE 481
              YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F DSISKL+P  PG  +TLS A +E
Sbjct: 427  QLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDSISKLVPPTPG--MTLSKAFEE 484

Query: 482  EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
            EP+L ER    EEVR LI++ + +EG IRN G HAGGV+I+P+ + +F PLY  +     
Sbjct: 485  EPRLQERYDGSEEVRDLIDMCRTLEGTIRNAGKHAGGVVISPTTITDFAPLYCDDEGKNP 544

Query: 542  ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYF--IKKINTKTTNFSLNKLPLNDKDTY 599
            ++Q+DK+D+E  GL+KFDFLGL TL+I+   +      K +       + ++ L +   +
Sbjct: 545  VTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMANAHKSDRGEEAIEIERISLTEPKCF 604

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHG 657
             LLK+  T +VFQLES+GMK++++  +PD FE++IAL++L+RPGP+   ++ NF  RKHG
Sbjct: 605  ELLKRYETTSVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGPLGSGMVDNFIERKHG 664

Query: 658  -EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKT 711
             E  +YPD +      K++L  TYGI++YQEQVMQIAQIL GY+LG AD+LRRA+GKKK 
Sbjct: 665  REAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQILSGYTLGGADMLRRAMGKKKP 724

Query: 712  SEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTH 771
             EM + R  F+ GAI  G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++KT 
Sbjct: 725  EEMAKQRSTFEQGAINNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTF 784

Query: 772  YSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKI 831
            Y ++FMAA LS  MD+T+K+ ILV +  +  GL++ PP++N  ++ F     +  K+ +I
Sbjct: 785  YPAYFMAAVLSADMDNTDKVVILVSEC-QRMGLNLCPPDVNEGQFKF-----NVDKNLRI 838

Query: 832  RYGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCF 890
             YG+GA+KG G+  I AI+  R  G  F +LFDF  R+D K+  +RII  LI +GA D  
Sbjct: 839  IYGIGAVKGVGEGPINAIIEARTIGGDFRDLFDFCNRVDLKHCGKRIIEKLILAGALDNL 898

Query: 891  NEKRYMLVASIDVALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELI 948
               R  L+ ++ +AL +A + K+     Q  LF     ++      + KV  W +KQ L 
Sbjct: 899  GPHRAALMENLPLALASATQHKRAESFGQCDLFGVLTTDSADIENRFSKVEKWPEKQWLA 958

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFI--PIY-LSELKPTYSCTVSGIITELKLKTTYRGK 1005
             EK+ LG  L+ H    YE  IR F   PI  LS  +   +  ++G+I  L++  T  GK
Sbjct: 959  GEKETLGLYLTGHPINQYEAHIRAFHCKPIVDLSSDRRGQNSRIAGLIIGLRVMVTKAGK 1018

Query: 1006 IL-IIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
             + I+ +DD +  +++ I   L ++ + +L  ++++++ G+V ED F   +++NA ++  
Sbjct: 1019 RMGILTVDDRTARIDITIFADLLDQYEALLVMDKVIVLQGQVSEDFFNGGLKMNAREVMS 1078

Query: 1065 INVARILYGKK-------------FSVMFNRTFNISILKKILLRFKCKNGL-PFVLYYCI 1110
            I+ AR  +  K             F V FN    ++           K GL P  + Y  
Sbjct: 1079 IDQARERFASKLRLKINKEKIADDFQVHFNEALQVA-----------KGGLCPVYIQYTQ 1127

Query: 1111 NKSIKYEMKFPLNYKVQPIDDLKLALINL 1139
             K+   E+   L++ V P DDL  AL  L
Sbjct: 1128 EKACA-ELALGLSWSVTPSDDLLFALQKL 1155


>gi|149907538|ref|ZP_01896285.1| DNA polymerase III subunit alpha [Moritella sp. PE36]
 gi|149809208|gb|EDM69137.1| DNA polymerase III subunit alpha [Moritella sp. PE36]
          Length = 1159

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1172 (41%), Positives = 729/1172 (62%), Gaps = 41/1172 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL LHSE+S++D L+R+  +         PA+A+TD +N+  ++KFY +    G+K
Sbjct: 4    PRFIHLHLHSEFSMVDSLVRMKRLAPRLQELNMPAIALTDQTNMCALVKFYGAMQRAGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D W+ +E   ++  +L +L K+N GY  +  L+SKAY      GRA I   WL +
Sbjct: 64   PIIGADFWVQSEEYPEEQFKLTVLAKDNKGYNNITVLISKAYSRGHVDGRAIIDKAWLAE 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              + +G+I LSGA  GDIG A+  G + +A      +   FPD++Y+E+ R  + +    
Sbjct: 124  --HAEGVILLSGARNGDIGKALLKGNDALARQCLTFYQAHFPDSYYLELIRTGRQDEEAY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   ++ AS   LP+VAT+ + FL   EF AHE+R  I +G  L + +R + ++KEQ  +
Sbjct: 182  LHMAVDFASQHQLPVVATNDVVFLHADEFDAHEIRVSIHDGYTLEDKRRPRLYSKEQYLR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIAKRCN  +  G+  LP FPT   ++  DFL+  S+ GL
Sbjct: 242  SEDEMCELFADIPEALANSVEIAKRCNATVRLGEYFLPNFPT-GELSTADFLVKVSEDGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
             +RL  L+ DP   + ++  Y+ RL+ E++ I  M F GYFLIV +FIQW+K+N+IPVGP
Sbjct: 301  VERLDFLFPDPAERERQRPAYEDRLEIELKVINDMGFPGYFLIVMEFIQWSKDNNIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITD+DPL Y LLFERFLNP R+SMPDFD+DFC + RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   + F D ISKLIP  PG  +TL+ A   E
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPGDPG--MTLAKAWDVE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L E  + +EEVR L+++A+ +EG+IRN G HAGGV+I+P+ + +F PLY  +     +
Sbjct: 479  PRLDEMYQGDEEVRALVDMARILEGVIRNAGKHAGGVVISPTVITDFAPLYCDDSGNNPV 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKK--INTKTTNFSLNKLPLNDKDTYN 600
            +Q+DK+D+EE GL+KFDFLGL TL+I+   +       +        +  + + D+  ++
Sbjct: 539  TQFDKNDVEEAGLVKFDFLGLRTLTIIQWALDMANPHLVKQGKKEIRIESIDITDRRCFD 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            LL+++ T AVFQLES+GMK++++  KPD FE++IAL++L+RPGP+   ++ NF  RKHG 
Sbjct: 599  LLQRSETTAVFQLESRGMKDLIRRLKPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 658  EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  
Sbjct: 659  EEVSYPDAQYQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM + R  F+ GAI  G+    + +IF+ +EKFAGYGFNKSH+ AYAL+SY T ++KTHY
Sbjct: 719  EMEKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             S+FMAA +S  MD+T K+  LV D ++  GL++LPP++N   + F   ++ D     I 
Sbjct: 779  PSYFMAAVMSADMDNTEKVVTLV-DEVERMGLTLLPPDVNKGLFKFN--VQED---HTII 832

Query: 833  YGLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG G+  I+AI+  R+ G  FT+LFDF  R++ K I++RI+  LI +GA D   
Sbjct: 833  YGIGAIKGVGEGPIDAIIAARESGGEFTDLFDFCNRVNLKKISKRIMEKLIYAGALDKLG 892

Query: 892  EKRYMLVASIDVALKNAEKTKKFI--NQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
              R  L A++  A+K A +        Q  LF        +    +  VP W  K  L  
Sbjct: 893  PHRAALHATLPEAMKAAAQHAMAEAYGQSDLFGILTTEPEEIESKFADVPEWPDKVWLEG 952

Query: 950  EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
            E++ LG  L+ H    Y  E++++    L ++KPT      T  G++   ++K T +G +
Sbjct: 953  ERETLGLYLTGHPINQYIKEVKRYSTNRLKDVKPTERGKVVTAVGLVISAQVKVTKKGTR 1012

Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
            + I+ IDD S  + V+  ++ +E+ +  + ++ +L+++G+V  D F    ++ A ++ DI
Sbjct: 1013 MGILEIDDKSGRLSVMFFSEAFERYEEYIAKDRILVITGEVSFDDFNGGYKMTAREVMDI 1072

Query: 1066 NVARILYGKKFSVMFN-RTFNISILKKILLRFKCKNGLPFVLYYC-IN-----KSIKYEM 1118
              AR  Y +  ++  N    N + + K +   +     P+    C IN        K ++
Sbjct: 1073 ETARERYARGITLQLNAEKINDTFMGKFMETLE-----PYRAGTCPINIVYQRADAKAKL 1127

Query: 1119 KFPLNYKVQPIDDLKLAL-INLGLYNAIIEYS 1149
               + ++V P D+L   L + LG  N  +E+ 
Sbjct: 1128 TLGVEWRVSPTDELLYGLELMLGSGNVDLEFD 1159


>gi|261492352|ref|ZP_05988914.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. BOVINE]
 gi|261312035|gb|EEY13176.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. BOVINE]
          Length = 1142

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1114 (43%), Positives = 708/1114 (63%), Gaps = 34/1114 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            +I+GL ++  +++ A  +   A+ +TD +N  G++KFY  A   GIKPIIG DV++  E 
Sbjct: 1    MINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKPIIGADVYVRTEA 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIEN-INYGRAEIRIEWLEKNKYQDGLIALSG 134
             ++    L LL KNN GY  + ++LSKAY +  I +   E   EWL   +  +G+I LSG
Sbjct: 61   GSEDYFELTLLAKNNKGYHNITQILSKAYQQGYIEFPMVER--EWL--AELNEGIIILSG 116

Query: 135  AHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNIN 194
              +GD+G A+       AE     + + +P++FY+ + R  + +    I+Q +  +    
Sbjct: 117  GRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRTGRADEERYIKQAVEFSQKNA 176

Query: 195  LPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDI 254
            +P+VA + + FLK+ +F AHE+R  I +   L + KR KK++ +Q F+T+ EM KLF D+
Sbjct: 177  IPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADL 236

Query: 255  PSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPE 314
            PSA+ NT+EIAKRC++ +  G+  LP FPT   ++  DFL+ KSK GL++RL  L+ DPE
Sbjct: 237  PSALANTVEIAKRCSVTVRLGEYFLPNFPT-GELSTEDFLVKKSKEGLEERLEFLFPDPE 295

Query: 315  IYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAY 374
                ++  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY
Sbjct: 296  ERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAY 355

Query: 375  SLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVT 434
            +L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V + YG+ AVSQI+T
Sbjct: 356  ALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIIT 415

Query: 435  FGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEE 494
            FGTMAAK  IRDVGRVL   YSF D ISKLIP  PG  +TL  A   EP+L E  + +EE
Sbjct: 416  FGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG--MTLEKAFAAEPKLPELYEADEE 473

Query: 495  VRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIG 554
            V+ LI++A+++EG+ RN G HAGGV+IAP+ + +F PLY        ++ +DK+D+E  G
Sbjct: 474  VKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAG 533

Query: 555  LIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAVFQ 612
            L+KFDFLGL TL+I+   +  I +   +       +  + L+DK ++ LL  A T AVFQ
Sbjct: 534  LVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETISLDDKKSFALLLAAKTTAVFQ 593

Query: 613  LESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR--- 666
            LES+GMK+++   KPD FE+IIAL++L+RPGP++  +++NF  RKHG E  +YPDP+   
Sbjct: 594  LESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQH 653

Query: 667  --TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNG 724
               K +L  TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+GKKK  EM   R+ F+ G
Sbjct: 654  ECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKG 713

Query: 725  AIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLS 784
            A   G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  
Sbjct: 714  AEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSE 773

Query: 785  MDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKS 844
            MD+T+KI +   D     GL+++PP++N  K+ F     S  +  +I YGLGAIKG G+ 
Sbjct: 774  MDNTDKI-VGFYDECMNMGLTVVPPDVNSGKHRF-----SVNEKGEIVYGLGAIKGVGEG 827

Query: 845  TIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDV 903
             IEAI+  R K G F +LFD T R+D K INRR   SLI SGAFD     R  L+ +++ 
Sbjct: 828  PIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLED 887

Query: 904  ALKNAEKTKKF--INQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH 961
            ALK +++  K   + Q  +F        +    Y   P WS++  L  E+  LG  LS H
Sbjct: 888  ALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGH 947

Query: 962  IFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-KILIIVIDDNSNS 1017
                +  E+  + P  L+EL+PT+     TVSGI+   ++  T RG +I I  I+D S  
Sbjct: 948  PIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGK 1007

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            +++ + ++  E   ++++++++++ +G V  D F   ++++A ++  ++ AR  + K  +
Sbjct: 1008 LDITLFSEALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLA 1067

Query: 1078 VMFNR-TFNISILKKI--LLRFKCKNGLPFVLYY 1108
            +  ++   +   +KK+  ++    +  LP   YY
Sbjct: 1068 LAISKEQLSADFIKKMTAIITPHKEGTLPLHFYY 1101


>gi|244539012|dbj|BAH83055.1| DNA polymerase III subunit alpha [Candidatus Ishikawaella capsulata
            Mpkobe]
          Length = 1158

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1149 (44%), Positives = 735/1149 (63%), Gaps = 47/1149 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+F+HLR+HS+YS+I G+ +I+ +++ AA    PAL ITD +NL G IKFY++ Y  GIK
Sbjct: 4    PRFVHLRIHSDYSMIHGIAKIDQLVKKAALLGMPALGITDFTNLCGFIKFYRATYKFGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + N I     ++L +L  NN GY  L  L+S+AY +        I+ EWL  
Sbjct: 64   PIIGADFKVKNSISPNILTKLTILASNNVGYKNLTLLISRAYQKGYGTNGPCIKREWLMA 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
             K   GLI LSG + GDIG  + +  +++  +    + K FP NFYIEI R         
Sbjct: 124  LK--SGLIVLSGGYSGDIGYGLIHKNHELVNHSLEFYKKHFPSNFYIEISRTGSKIEEQY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   I +A   N+P+VAT+ + FL K +F AHE+R  I +G IL+++ R  K+ ++Q  +
Sbjct: 182  LALAIKLAMVENIPLVATNEVYFLSKIDFEAHEIRVAIHQGHILNDSNRSYKYNEQQYMR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            T++EM  LF DIP A+ N++EIAKRCN+++  GK  LP+FPT  N+N   FLI+K+  GL
Sbjct: 242  TENEMCNLFKDIPEALINSVEIAKRCNVRITLGKYFLPQFPT-GNLNPQQFLINKATSGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  ++ DP I   ++  Y KRL  E+  I KM F  YFLIV +F+QW+K+N IPVGP
Sbjct: 301  EERLKFIFPDPNIRIEKRKEYDKRLNIELNIINKMGFPSYFLIVMEFVQWSKDNCIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDI+PL +NL+FERFLN  R+S+PDFDIDFC E RD VI++V +
Sbjct: 361  GRGSGAGSLVAYALQITDINPLEFNLIFERFLNLERVSLPDFDIDFCMEKRDMVIEHVSN 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YGKDAV+QI+TFGTM AK  IRDVGRVL   Y F + ISK+IP   G  IT+  A   E
Sbjct: 421  IYGKDAVAQIITFGTMTAKSVIRDVGRVLGYPYGFVERISKMIPSDIG--ITIERAFTLE 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            P+L+E  K +E+V+ +I++A+++EG+IRN   HAGG++I+P+++ +F PL+  E     I
Sbjct: 479  PKLSELYKIDEDVKSIIDMARKLEGVIRNASKHAGGLVISPTRITDFTPLHCDENGNNPI 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
            +Q+DKDDIE IGL+KFDFLGL TL+I++  I  I   + N   T  ++  +PLNDK T+ 
Sbjct: 539  TQFDKDDIEYIGLVKFDFLGLRTLTIINWAIEMINLTRNNQSITPVNIASIPLNDKKTFQ 598

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
            +L++A T AVFQLES+GM++++K  KPD FE+IIALI+L+RPGP+   ++ NF  RKHG 
Sbjct: 599  ILQQAKTTAVFQLESKGMRDLIKRLKPDCFEDIIALIALFRPGPLQSGMVDNFINRKHGR 658

Query: 658  EYFNYPDPRT-----KDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
            E  +YPD +      K +L  TYGI++YQEQVMQIAQ+L GY+LG+AD+LR A+GKK+  
Sbjct: 659  EKVSYPDIKCQHESLKPILESTYGIILYQEQVMQIAQVLAGYTLGKADILRYAMGKKQPI 718

Query: 713  EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
            EM++ R FF+ G+ K G+S   A +IF+ +EKFAGYGFNKSH+TAYAL+SY T +LKTHY
Sbjct: 719  EMVKQRSFFKRGSEKKGISSEMALKIFSMLEKFAGYGFNKSHSTAYALISYQTLWLKTHY 778

Query: 773  SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
             + FMAA L+  MD+TNKI  L+ D  +  GL+ILPP+IN+S Y F+  +   G   KI 
Sbjct: 779  PAQFMAAVLTAYMDNTNKIVSLI-DECRMMGLTILPPDINVSLYTFY--VNDLG---KIV 832

Query: 833  YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
            YG+GAIKG GK+ IE I+  R + G F +L D   RID K +N+ ++  +I SG  D   
Sbjct: 833  YGMGAIKGIGKTAIENIIYARNQGGRFIDLLDLCNRIDTKKLNQSMMKKMILSGCCDSLG 892

Query: 892  EKRYMLVASI----DVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVK-VPSWSKKQE 946
              R  ++ S+    ++A++N+    +   Q  +F    N  ++    Y K V  W     
Sbjct: 893  SHRAAMINSLSQAFNIAVQNS--IARLHGQADMF----NGAIESKHFYPKEVSVWPDHLR 946

Query: 947  LIEEKKVLGFCLSEHIFCIYETEIRQF-IPIYLSELKPTYS----CTVSGIITELK-LKT 1000
            L  E+  LG  L+ H    Y  EI+ +   +++ ++   Y       + G++T ++   T
Sbjct: 947  LQGERDTLGLYLTGHPINTYLEEIKFYNKGLWIKDINSHYEGNKIIVIVGLLTTIRSFLT 1006

Query: 1001 TYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAE 1060
                KI +  ++D+S S+EVII + + E  + +LK++ +LI++GK+  D F K  +I A+
Sbjct: 1007 KNNKKISMCYLEDHSGSLEVIIFSDILEIYQPLLKKDNILIINGKIQYDNFRKRQQIVAQ 1066

Query: 1061 KIFDINVARILYGKKFSVMFNRTFN----ISILKKILLRFKCKNGLPFVLYYCINKSIKY 1116
            KI ++  AR  Y +  S+    +      +S LKK  L F C   +P  +YY   K+   
Sbjct: 1067 KIMNLKEARKKYVRGISLWLTSSQVTNRFLSTLKK-YLSFHCGGSIPLYVYY---KNTDA 1122

Query: 1117 EMKFPLNYK 1125
            ++KF  + K
Sbjct: 1123 QIKFTFSKK 1131


>gi|219682166|ref|YP_002468550.1| DNA polymerase III subunit alpha [Buchnera aphidicola str. Tuc7
            (Acyrthosiphon pisum)]
 gi|384226047|ref|YP_005617210.1| DNA polymerase III subunit alpha [Buchnera aphidicola str. TLW03
            (Acyrthosiphon pisum)]
 gi|384227104|ref|YP_005618854.1| DNA polymerase III subunit alpha [Buchnera aphidicola str. LL01
            (Acyrthosiphon pisum)]
 gi|219621899|gb|ACL30055.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7
            (Acyrthosiphon pisum)]
 gi|311085980|gb|ADP66062.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LL01
            (Acyrthosiphon pisum)]
 gi|311086554|gb|ADP66635.1| DNA polymerase III alpha chain [Buchnera aphidicola str. TLW03
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1146 (44%), Positives = 745/1146 (65%), Gaps = 52/1146 (4%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P+FIHL +HS+YS+IDGL +  D+++ AA+   PA+AITD +NL+G+IKFY  A+  G+K
Sbjct: 4    PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIEN-INYGRAEIRIEWL- 120
            PIIG  V   +++ N + ++L LL     GY  L  L+S+AY +  ++     I  +W  
Sbjct: 64   PIIGITVNFFSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVHNNHVTIEKKWFS 123

Query: 121  EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
            E NK   GLI LSG   G++G  + NG++ +       + K FPD++Y+E+ R  + N  
Sbjct: 124  EINK---GLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLELFRTNRDNEE 180

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   ++++ +  +PIVAT+ + FL + +F  H++R  I EGEIL ++K    ++ +Q 
Sbjct: 181  TYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSKIQNNYSNQQF 240

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
             KT  EM  LF DIP A+ N++EIAKRCN+ +  GK  LP+F T K I++  +LI ++  
Sbjct: 241  LKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGK-ISVEKYLIKEAYK 299

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            G+KKRL + Y D E YK    +Y  RL  E+  I KM F GYFLIV +FIQWAK+N+IPV
Sbjct: 300  GIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIVMEFIQWAKDNNIPV 359

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAY+L+IT++DPLS+NLLFERFLNP RISMPDFDIDFC E RD+VI +V
Sbjct: 360  GPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDIDFCMEKRDQVIDHV 419

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
             + YGK+AV+QI+TFGT+ AK  IRDVGRVL   Y F + +SKL+P  PG  ITL  A  
Sbjct: 420  SEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVPLDPG--ITLKEAFS 477

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
            +E +L    KN E+V+ LI++AK++EG  RN+G HAGGV+I+P+K+ +FCPLY  E    
Sbjct: 478  KESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKITDFCPLYCDEKGNN 537

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT-----NFSLNKLPLND 595
             ++Q+DK+DIE +GL+KFDFLGL TL+I+    Y ++ INTK         ++N +PL+D
Sbjct: 538  PVTQFDKNDIEYVGLVKFDFLGLRTLTIIS---YAVEMINTKLNLNKKRTININSIPLDD 594

Query: 596  KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
               +NLLK + T  VFQLES GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  
Sbjct: 595  AKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIN 654

Query: 654  RKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIG 707
            RKHG E  +YPD +      K +L  TYGI++YQEQVM+IAQ+L GY+LG AD+LRRA+ 
Sbjct: 655  RKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLGSADILRRAMS 714

Query: 708  KKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAY 767
            KK   +M E R  F+ GA+  G+ K  + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +
Sbjct: 715  KKNLKDMSEQRAIFEEGALNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVAYALVSYQTLW 774

Query: 768  LKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK 827
            LK+HY + F+AA ++  +D+T KI IL+ +++   G+ I+PPNINLSKY F+   + D  
Sbjct: 775  LKSHYPAEFIAAAMTSDIDNTEKIVILINESL-NMGVKIIPPNINLSKYEFYVNDQGD-- 831

Query: 828  HKKIRYGLGAIKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSLINSGA 886
               I YGLGAIKG GK++++ ++ ER+   FF +LFD   RID + I RR++  LI SG+
Sbjct: 832  ---IVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLIMSGS 888

Query: 887  FDCFNEKRYMLVASIDVAL---KNAEKTKKFINQ--LSLFKNDDNNNLKEYLNYVKVPSW 941
             DCF++ R  L+ SID A+   K + + K F       +F+N+ N   K  L  +  P  
Sbjct: 889  CDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNLVCP-- 946

Query: 942  SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSEL---KPTYSCTVSGIITELK 997
             +K +L  E +VLGF L+ H    Y+ E+  ++  + LS+L   K      V+GII  +K
Sbjct: 947  -EKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVSIK 1005

Query: 998  LKTTY-RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
            +K T  + +I I+V+DDN++ +EV+I  +L    ++++K N+LL V G +      KNI+
Sbjct: 1006 IKITKNKNRIAILVLDDNTSRLEVVIFTELLNAYESLVKLNKLLFVHGMLNVSFIDKNIK 1065

Query: 1057 INAEKIFDINVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYY----- 1108
            + A  + D++V R  Y  K  ++ N+   NI  L  +   L  + K  +P  +++     
Sbjct: 1066 MTAYALIDLSVLRKKYINKLIIILNKEKTNIFFLNNLYECLDKQSKGNIPVFIFFDNKEV 1125

Query: 1109 CINKSI 1114
            C+NK +
Sbjct: 1126 CLNKKL 1131


>gi|424649288|ref|ZP_18086951.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-57A1]
 gi|424657363|ref|ZP_18094648.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-81A2]
 gi|408032106|gb|EKG68702.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-57A1]
 gi|408052484|gb|EKG87523.1| DNA polymerase III subunit alpha [Vibrio cholerae HC-81A2]
          Length = 1143

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1092 (43%), Positives = 701/1092 (64%), Gaps = 36/1092 (3%)

Query: 16   IIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEI 75
            ++DGL ++  +++  A    PA+A+TD +NL G++KFY +A+N G+KPIIG D  + +E 
Sbjct: 1    MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTLQSEE 60

Query: 76   ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGA 135
               + ++L LL KNN GY  L  L+SKAY+      +  I   WL   ++ +GLI LSG 
Sbjct: 61   FGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL--VEHAEGLIVLSGG 118

Query: 136  HLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINL 195
              G++G A+  G     E     +   F D+FY+E+ R  + +    +   +++A   +L
Sbjct: 119  KSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDL 178

Query: 196  PIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIP 255
            P+VAT+ + F+ +  F AHE+R  I +G  L + +R K ++ +Q  ++++EM +LF DIP
Sbjct: 179  PVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIP 238

Query: 256  SAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI 315
             A+ N++EIAKRCN+ +  G+  LP FPT   + I DFL+ KS+ GL++RL  L+ DPE+
Sbjct: 239  EALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEERLEFLFPDPEV 297

Query: 316  YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYS 375
                +  Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGPGRGSGA SLVAY+
Sbjct: 298  RAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYA 357

Query: 376  LSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTF 435
            L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V + YG+DAVSQI+TF
Sbjct: 358  LKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITF 417

Query: 436  GTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEV 495
            GTMAAK  IRDVGRVL   + F D ISKL+P  PG  +TL  A   EP L E    +EEV
Sbjct: 418  GTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAEPALQELYDADEEV 475

Query: 496  RQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGL 555
            ++LI+  + +EG  RN G HAGGV+I+P+ + +F P+Y        ++Q+DK+D+E  GL
Sbjct: 476  KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGL 535

Query: 556  IKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYNLLKKANTVAVFQL 613
            +KFDFLGL TL+I+D  +  +     K       +  +PL+D  ++  L+ A T AVFQL
Sbjct: 536  VKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQL 595

Query: 614  ESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPR---- 666
            ES+GMK ++K  +PD FE+IIAL++L+RPGP+   ++ NF  RKHG E  +YPD +    
Sbjct: 596  ESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHE 655

Query: 667  -TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
              K++L  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK  EM + R  FQ GA
Sbjct: 656  SLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGA 715

Query: 726  IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
             K G+    A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY + FMAA ++  M
Sbjct: 716  EKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKPHYPAEFMAAVMTADM 775

Query: 786  DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
            D+T K+  LV D  K  GL++LPP+IN   Y F   ++ +G    I YG+GAIKG G+  
Sbjct: 776  DNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIVYGIGAIKGVGEGP 829

Query: 846  IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
            IEAI+  R K G+F +LFDF  RID K +N+R+I  LI +GA D     R  ++AS+D A
Sbjct: 830  IEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDA 889

Query: 905  LKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHI 962
            ++ A +    +   Q  +F    +   +    Y +VP W +K  L  E++ LG  L+ H 
Sbjct: 890  VRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHP 949

Query: 963  FCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSV 1018
               Y  E+ ++    L+E  PT    S TV+G++   ++ TT RG +I ++ +DD S  +
Sbjct: 950  VDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRM 1009

Query: 1019 EVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSV 1078
            EV++ ++  ++    L+++++L+VSG+V  D F   ++++A ++ D+  AR    +KF+ 
Sbjct: 1010 EVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAR----EKFA- 1064

Query: 1079 MFNRTFNISILK 1090
               R  +ISIL+
Sbjct: 1065 ---RGLSISILQ 1073


>gi|94676467|ref|YP_588968.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc
            (Homalodisca coagulata)]
 gi|94219617|gb|ABF13776.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc
            (Homalodisca coagulata)]
          Length = 1163

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1161 (43%), Positives = 732/1161 (63%), Gaps = 36/1161 (3%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P FIHLR+HS+YSIIDGL++++ +++ A +   PALA+TD++NL+GIIKFYK+A + GIK
Sbjct: 4    PSFIHLRIHSDYSIIDGLIKVSSLVKKAVSLNMPALALTDVTNLYGIIKFYKAANSVGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PIIG D  + N I   + + L +L  N  GY  L  L+S+AY          I  +WL +
Sbjct: 64   PIIGADFLMYNPILGGELTELTILATNYIGYQCLTMLISQAYRRGYGAAGPVIDRDWLIQ 123

Query: 123  NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
              +  GLI LSGA  GD+G  + N +    +     + + FPD +Y+E+ R  + N    
Sbjct: 124  --HNQGLIILSGARKGDVGKLLLNDKMQQVKKCLAFYHRYFPDRYYLELIRTGRLNEEKY 181

Query: 183  IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
            +   + +A    LP+VAT+ ++F+   +F AH +R  I  G +L N K+   ++ +Q  +
Sbjct: 182  LNLAVLLAKKNGLPVVATNDVRFISSDDFQAHNIRVAIHNGCLLDNVKQSYDYSSQQYIR 241

Query: 243  TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
            ++ EM +LF DIP A+ N++EIA RCN+ +  G+  LP+F T  NI+ N +LI  ++ GL
Sbjct: 242  SEQEMCELFKDIPEALANSVEIAIRCNVTIRLGEYFLPQFYT-GNISTNSYLIKCARQGL 300

Query: 303  KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
            ++RL  L+ D    K  +L Y +RL  E++ I  M F GYFLIV +FIQW+K+NSIPVGP
Sbjct: 301  EERLAFLFPDLIQLKDNRLPYDQRLDQELQVINGMGFPGYFLIVMEFIQWSKDNSIPVGP 360

Query: 363  GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
            GRGSGA SLVAY+L ITDI+PL ++LLFERFLNP RISMPDFDIDFC E RD VI +V +
Sbjct: 361  GRGSGAGSLVAYALKITDINPLPFDLLFERFLNPERISMPDFDIDFCMEKRDLVINHVAE 420

Query: 423  RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
             YG+DAVSQI+TFGTMAAK  IRDVGRVL   YSF + ISKL+P  PG  ITL  A+   
Sbjct: 421  TYGRDAVSQIITFGTMAAKAVIRDVGRVLGYPYSFVNKISKLVPHDPG--ITLDKALAIA 478

Query: 483  PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
            PQL +    +E V  LI+LA+++EG+ RNVG HAGGV+IAP+K+ +F PLY        +
Sbjct: 479  PQLRQIYNVDENVTLLIDLARKLEGVTRNVGKHAGGVVIAPTKITDFAPLYYDSEGKCPL 538

Query: 543  SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI-KKINTKTTNFSLNKLPLNDKDTYNL 601
            +Q+DK+DIE  GL+KFDFLGL TL+I+++ +  I K I++K     +  +PL+DK ++++
Sbjct: 539  TQFDKNDIEYAGLVKFDFLGLRTLTIINRALEMINKHIHSKLNPIEITTIPLDDKKSFDM 598

Query: 602  LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-E 658
            L  A+T A+FQLES+G+K +++  +PD FE+IIALI+L+RPGP+   ++ NF  RKHG E
Sbjct: 599  LLCADTTAIFQLESRGIKELIRRLQPDCFEDIIALIALFRPGPLQSGMVDNFINRKHGRE 658

Query: 659  YFNYPD-----PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSE 713
               YPD     P  + +L  TYGI++YQEQVMQIA+IL GY+LG+ADLLRRA+GKK+  E
Sbjct: 659  TICYPDIQWQHPSLQPILEPTYGIILYQEQVMQIARILAGYTLGEADLLRRAMGKKEPKE 718

Query: 714  MIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYS 773
            M++ R  F+ GA K G+    A +IF+ +EKFAGYGFNKSH+TAYAL+SY T +LK HY 
Sbjct: 719  MVKQRAIFKIGAEKMGIESKLAMKIFDLVEKFAGYGFNKSHSTAYALVSYQTLWLKAHYP 778

Query: 774  SFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRY 833
            S FMA+ ++  +D+ +K+ ILV + ++  G+++LPPNIN+S YYF        K+ +I Y
Sbjct: 779  SQFMASAMTADIDNIDKLAILVYECLRM-GITVLPPNINISHYYFHV-----NKNSQIIY 832

Query: 834  GLGAIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNE 892
            GLGAIKG G+  I  I+  R  G  F+NL D   R   K +NRRI+  LI SGA D    
Sbjct: 833  GLGAIKGLGEGPITTILEARNTGGKFSNLLDLCIRTCTKKLNRRILEKLIISGACDQLGS 892

Query: 893  KRYMLVASIDVALKNAEKTKKF--INQLSLFKND-DNNNLKEYLNYVK-VPSWSKKQELI 948
             R  L+  ++ ALK A++  K   I Q+ +F    D   + +Y +  K +  WSK+  L 
Sbjct: 893  HRAALMNELETALKTADQYTKLNMIGQIDMFSTQADKQCILDYSHKSKNIQPWSKQVILK 952

Query: 949  EEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC----TVSGIITELK-LKTTYR 1003
             E++ LG  L+ H    Y  EI+ +      +  P  +C    TV G++  ++ + T   
Sbjct: 953  GEQETLGLYLTSHPIIEYLYEIKFYTKGLRLKDIPLITCSKKITVVGLLLSIRNIITNNN 1012

Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
              + I  IDD +  +++ I++ + ++ K+ LK + +L+V G+V        +++ A KI 
Sbjct: 1013 QSLSICTIDDMTGHLDIAISSDMLDQYKSFLKVDNILLVEGEVRFSNTQSTLKVIAHKIM 1072

Query: 1064 DINVARILYGKKFSVMFN-RTFNISILKKILLRFKCK----NGLPFVLYYCINKSIKYEM 1118
            DIN AR  Y    ++    +  N S LK + L  K        +P  LYY  N + + ++
Sbjct: 1073 DINTARNKYAAGIAIFLTAQQINESFLKNLDLSLKSHALEAGAIPVHLYYNKNNT-RVQL 1131

Query: 1119 KFPLNYKVQPIDDLKLALINL 1139
             + + +KV+  D L   L NL
Sbjct: 1132 HYNITWKVKLTDYLLNDLRNL 1152


>gi|188992333|ref|YP_001904343.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            campestris str. B100]
 gi|167734093|emb|CAP52299.1| DNA polymerase III alpha subunit [Xanthomonas campestris pv.
            campestris]
          Length = 1219

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1117 (43%), Positives = 679/1117 (60%), Gaps = 75/1117 (6%)

Query: 4    QFIHLRLHSEYSIIDGLLRIND--------------VIEAAANDYQPALAITDLSNLFGI 49
            +F+HL +H+E+S+ D  +R+ +              ++  A     PALA+TDL+NLF +
Sbjct: 27   RFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFAL 86

Query: 50   IKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENIN 109
            +KFYK+A   GIKPI G DV I     +  P R+ LL ++  GYL L  LL++A++E   
Sbjct: 87   VKFYKAAEGVGIKPIAGADVMIATP--DMTPWRMTLLCRDREGYLSLSRLLTRAWMEGHR 144

Query: 110  -YGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
              G   I  EWL+       L AL+G      G     GR D+AE     W ++F D  +
Sbjct: 145  PEGGVAIHPEWLQAGHAN--LFALAGRD-SLAGRLFAEGRADLAEQQLADWQRVFGDGLH 201

Query: 169  IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
            +E+ R  +       Q  ++ A    LP+VA++ ++FL  ++F AHE R CI+ G +L +
Sbjct: 202  LELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDD 261

Query: 229  TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNI 288
             KR + ++ +Q  K+  EM  LF D+P AI NT+ +A+RCN+++  G   LP +P P++ 
Sbjct: 262  PKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFLPAYPVPEDE 321

Query: 289  NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSD 348
             ++ ++ S+S+ GL  RL    K+P      +  Y  RL+FE++TIIKM F GYFLIV+D
Sbjct: 322  TLDSWIRSQSRDGLAARL---EKNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVAD 378

Query: 349  FIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDF 408
            FIQW KN  IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDF
Sbjct: 379  FIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDF 438

Query: 409  CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468
            C + RD VI YV  +YG++ VSQI+T+GTMAAK  +RD GRVL   Y   DS++KLIP  
Sbjct: 439  CMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNI 498

Query: 469  PGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
             G  ITL +A+ E        P+L +R + E++VR L++LA+Q+E + RN G HAGGV+I
Sbjct: 499  LG--ITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 556

Query: 522  APSKLINFCPLYKQ--EGMTG--IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK 577
            AP  L  FCPL+ +  EG  G   ++Q+DK+D+EE+GL+KFDFLGL TL+I+D   + +K
Sbjct: 557  APEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIID---WAVK 613

Query: 578  KINTKTTNFSLN-----KLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
             IN +     ++      +PL+D  TY  +    NT AVFQ ES GM+ +LK+A+PD FE
Sbjct: 614  AINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFE 673

Query: 632  EIIALISLYRPGPMDLIKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
            ++IAL+SLYRPGPMDLI +F  RKHG+    YPDPRT+ +L +TYGIMVYQEQVMQ+AQI
Sbjct: 674  DLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQEQVMQMAQI 733

Query: 691  LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
            +G YSLG ADLLRRA+GKK  +EM +HR+ F+ GA K G+S  KA+EIF+ +EKFAGYGF
Sbjct: 734  VGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLMEKFAGYGF 793

Query: 751  NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
            NKSHA AYAL+SY TA+LK HY + FMAA LS  MD+T+K+ +   D ++  GL++LPP 
Sbjct: 794  NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKV-VGFLDEVRNLGLTVLPPR 852

Query: 811  INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRID 869
            +N S Y F            I+YGLGAIKG G+   EAIV ER + G +T L DF  R+ 
Sbjct: 853  VNESAYMF-----EAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTRVG 907

Query: 870  KKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNN 927
               +NRR + ++IN+GA D   + R  L+  +   +K  E+   ++   Q SLF   D +
Sbjct: 908  TAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPS 967

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------ 981
                 L+  +   W   Q L  E++ LGF LS H F  +  E+R+ +   LS L      
Sbjct: 968  APAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKILAS 1027

Query: 982  -------------KPTYSCTVSGIITELKLKTTYRGKILIIV-IDDNSNSVEVIINNQLY 1027
                         K  +   VS I+    +    +G   + V ++D    VE    +   
Sbjct: 1028 QQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAM 1087

Query: 1028 EKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
             +  ++L  + +LI+ G + ED F     +   + +D
Sbjct: 1088 AEFGHLLTRDRILIIKGGLREDEFNGGYSLRIRQCWD 1124


>gi|384427284|ref|YP_005636642.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. raphani
            756C]
 gi|341936385|gb|AEL06524.1| DNA polymerase III alpha subunit [Xanthomonas campestris pv. raphani
            756C]
          Length = 1197

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1120 (42%), Positives = 682/1120 (60%), Gaps = 81/1120 (7%)

Query: 4    QFIHLRLHSEYSIIDGLLRIND--------------VIEAAANDYQPALAITDLSNLFGI 49
            +F+HL +H+E+S+ D  +R+ +              ++  A     PALA+TDL+NLF +
Sbjct: 5    RFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFAL 64

Query: 50   IKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENIN 109
            +KFYK+A   GIKPI G DV I     +  P R+ LL ++ +GYL L  LL++A++E   
Sbjct: 65   VKFYKAAEGVGIKPIAGADVMIATP--DMTPWRMTLLCRDRDGYLSLSRLLTRAWMEGHR 122

Query: 110  -YGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
              G   I  EWL+       L AL+G      G     GR D+AE     W ++F D  +
Sbjct: 123  PEGGVAIHPEWLQAGHAN--LFALAGRD-SLAGRLFAEGRADLAEQQLADWQRVFGDGLH 179

Query: 169  IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
            +E+ R  +       Q  ++ A    LP+VA++ ++FL  ++F AHE R CI+ G +L +
Sbjct: 180  LELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDD 239

Query: 229  TKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNI 288
             KR + ++ +Q  K+  EM  LF D+P AI NT+ +A+RCN+++  G   LP +P P++ 
Sbjct: 240  PKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFLPAYPVPEDE 299

Query: 289  NINDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSD 348
             ++ ++ S+S+ GL  RL    K+P      +  Y  RL+FE++TIIKM F GYFLIV+D
Sbjct: 300  TLDSWIRSQSRDGLAARL---EKNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVAD 356

Query: 349  FIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDF 408
            FIQW KN  IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFDIDF
Sbjct: 357  FIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDF 416

Query: 409  CPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFK 468
            C + RD VI YV  +YG++ VSQI+T+GTMAAK  +RD GRVL   Y   DS++KLIP  
Sbjct: 417  CMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNI 476

Query: 469  PGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLI 521
             G  ITL +A+ E        P+L +R + E++VR L++LA+Q+E + RN G HAGGV+I
Sbjct: 477  LG--ITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 534

Query: 522  APSKLINFCPLYKQ--EGMTG--IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIK 577
            AP  L  FCPL+ +  EG  G   ++Q+DK+D+EE+GL+KFDFLGL TL+I+D   + +K
Sbjct: 535  APEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIID---WAVK 591

Query: 578  KINTKTTNFSLN-----KLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
             IN +     ++      +PL+D  TY  +    NT AVFQ ES GM+ +LK+A+PD FE
Sbjct: 592  AINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFE 651

Query: 632  EIIALISLYRPGPMDLIKNFCRRKHGEY-FNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
            ++IAL+SLYRPGPMDLI +F  RKHG+    YPDPRT+ +L +TYGIMVYQEQVMQ+AQI
Sbjct: 652  DLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQI 711

Query: 691  LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
            +G YSLG ADLLRRA+GKK  +EM +HR+ F+ GA K G+S  KA+EIF+ +EKFAGYGF
Sbjct: 712  VGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLMEKFAGYGF 771

Query: 751  NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
            NKSHA AYAL+SY TA+LK HY + FMAA LS  MD+T+K+ +   D ++  GL++LPP 
Sbjct: 772  NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKV-VGFLDEVRNLGLTVLPPR 830

Query: 811  INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRID 869
            +N S Y F            I+YGLGAIKG G+   EAIV ER + G +T L DF  R+ 
Sbjct: 831  VNESAYMF-----EAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCMRVG 885

Query: 870  KKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNN 927
               +NRR + ++IN+GA D   + R  L+  +   +K  E+   ++   Q SLF   D +
Sbjct: 886  TAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPS 945

Query: 928  NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------ 981
                 L+  +   W   Q L  E++ LGF LS H F  +  E+R+ +   LS L      
Sbjct: 946  APAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKILAS 1005

Query: 982  -----------------KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINN 1024
                             +P  S  ++G +  ++ K   +   + + ++D    VE    +
Sbjct: 1006 QQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRRKGDSQ---VFVQLEDGRGRVECSAFS 1062

Query: 1025 QLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
                +  ++L  + +LI+ G + ED F     +   + +D
Sbjct: 1063 DAMAEFGHLLTRDRILIIKGGLREDEFNGGYSLRIRQCWD 1102


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.140    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,662,110,235
Number of Sequences: 23463169
Number of extensions: 772547728
Number of successful extensions: 2107587
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6704
Number of HSP's successfully gapped in prelim test: 1390
Number of HSP's that attempted gapping in prelim test: 2039139
Number of HSP's gapped (non-prelim): 16566
length of query: 1149
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 995
effective length of database: 8,745,867,341
effective search space: 8702138004295
effective search space used: 8702138004295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 83 (36.6 bits)