BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9396
(1149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JXZ2|DPO3A_NEIMB DNA polymerase III subunit alpha OS=Neisseria meningitidis serogroup
B (strain MC58) GN=dnaE PE=1 SV=1
Length = 1144
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/1133 (47%), Positives = 736/1133 (64%), Gaps = 20/1133 (1%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P +I LRLH+E+SI DG++RI +I A PAL I+DL N FG++KFYK+ + GIK
Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
PI DV I N KP R +L+++N+ GYL+L ELL+ AY+ ++ N AE+ EWLE
Sbjct: 64 PIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123
Query: 122 KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
N GLI LSGAH G++G+ + NG D A A +++ FPD FY+E+QR ++P
Sbjct: 124 -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQRLPERPEWE 182
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
+ + +A + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT Q
Sbjct: 183 ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
F M + F D+P A++NT+EIAKRCNL + GK LP FPTP ++++D+LI S
Sbjct: 243 FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302
Query: 301 GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
GL++R++ LY D + Y++RL FE+ II+M F GYFLIV DFI WAK + PV
Sbjct: 303 GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362
Query: 361 GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC R RVI+YV
Sbjct: 363 GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422
Query: 421 KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
+++YG +AVSQIVTFGTM++K IRDVGRVL+L + CD +SKLIP + K ++L A++
Sbjct: 423 REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482
Query: 481 EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
EPQ+ E I+ EE +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +
Sbjct: 483 TEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541
Query: 541 IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
+S YDK D+E++GL+KFDFLGL L+I++ IK NT + K+PL+D+ Y
Sbjct: 542 PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAYQ 599
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
+ + ANT AVFQ ES GMK MLK A FEE+IA +SLYRPGPMD I +F R G+ F
Sbjct: 600 IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659
Query: 661 NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
Y P + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK EM++HR+
Sbjct: 660 QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719
Query: 721 FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
F GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 720 FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779
Query: 781 LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
+S +D+T+++K D + G+ LPP+IN S Y F P + KIRY LGAIKG
Sbjct: 780 MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833
Query: 841 TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
TG++ +E+I R+ G FT L DF +R+ K+++NRR + +LI GAFD R ML+A
Sbjct: 834 TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893
Query: 900 SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
+ID+A+ NA++ NQ LF D + E + + P WS+ ++L EEK V+GF LS
Sbjct: 894 NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951
Query: 960 EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
H F Y E+RQ P L LKP S ++G +T ++ RGKI + ++D S VE
Sbjct: 952 GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011
Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
+++ Q E + LK +++LI+ KV D + +RI A ++ + AR Y + S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071
Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
+ +I L ++L + + +P L Y N+ ++ P + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123
>sp|Q9JVX8|DPO3A_NEIMA DNA polymerase III subunit alpha OS=Neisseria meningitidis serogroup
A / serotype 4A (strain Z2491) GN=dnaE PE=3 SV=1
Length = 1144
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/1133 (47%), Positives = 739/1133 (65%), Gaps = 20/1133 (1%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P +I LRLH+E+SI DG++RI +I A PAL I+DL N FG++KFYK+ + GIK
Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
PI DV I N KP R +L+++N+ GYL+L ELL+ AY+ ++ N AE+ EWLE
Sbjct: 64 PIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123
Query: 122 KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
N GLI LSGAH G++G+ + NG D A A +++ FPD FY+E+QR ++P
Sbjct: 124 -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWE 182
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
+ + +A + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT Q
Sbjct: 183 ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQF 242
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
F M + F D+P A++NT+EIAKRCNL + GK LP FPTP ++++D+L+ S
Sbjct: 243 FIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNE 302
Query: 301 GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
GL++R++ LY D + Y++RL FE+ II+M F GYFLIV DFI WAK + PV
Sbjct: 303 GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362
Query: 361 GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC R RVI+YV
Sbjct: 363 GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYV 422
Query: 421 KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
+++YG +AVSQIVTFGTM++K IRDVGRVL+L ++ CD +SKLIP + K + L +A+K
Sbjct: 423 REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMK 482
Query: 481 EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
EPQ+ E I+ EE +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +
Sbjct: 483 AEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541
Query: 541 IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
+S YDK D+E++GL+KFDFLGL L+I++ IK NT + +PL+D+ Y
Sbjct: 542 PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIVDVGTIPLDDQTAYQ 599
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
+ + ANT AVFQ ES GMK MLK A FEE+IA +SLYRPGPMD I +F R G+ F
Sbjct: 600 IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659
Query: 661 NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
Y P + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK EM++HR+
Sbjct: 660 QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719
Query: 721 FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
F GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA
Sbjct: 720 FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779
Query: 781 LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
+S +D+T+++K D + G+ LPP+IN S Y F P + KIRY LGAIKG
Sbjct: 780 MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833
Query: 841 TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
TG++ +E+I + R+ G FT L DF +R+ K+++NRR + +LI GAFD R ML+A
Sbjct: 834 TGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893
Query: 900 SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
+ID+A+ NA++ NQ LF D + E + + P WS+ ++L EEK V+GF LS
Sbjct: 894 NIDLAMNNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951
Query: 960 EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
H F Y E+RQ P LS+LKP S ++G +T ++ RGKI + ++D S VE
Sbjct: 952 GHPFGPYAQEVRQIAPQKLSKLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011
Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
+++ Q E + LK +++LI+ KV D + +RI A ++ + AR Y + S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071
Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
+ +I L ++L + + +P L Y N+ ++ P + V P
Sbjct: 1072 LALAPHHDIGELVQLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123
>sp|Q9HXZ1|DPO3A_PSEAE DNA polymerase III subunit alpha OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaE
PE=3 SV=1
Length = 1173
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/1187 (42%), Positives = 748/1187 (63%), Gaps = 54/1187 (4%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M F+HLRLH+E+S++DGL+R+ + +A A PA+A+TD SN+ ++KFYK+A G
Sbjct: 1 MTVSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAG 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
IKPI G D+W+ + E+ SRL LL N GY L EL+S+ + E G I +W+
Sbjct: 61 IKPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWV 120
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
++ +GLIALS A G+IG A+ +G AE R W ++FP+ FY+E+QR + N
Sbjct: 121 KEAA--EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDE 178
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
+ + +AS N P+VAT+ ++F+K+ +F AHE R CI EG L + +R + ++ +Q
Sbjct: 179 EHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQY 238
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
K+ +EM +LF D+P A++NT+EIAKRCN++++ GK LP FPTP + I+D+L S
Sbjct: 239 LKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFE 298
Query: 301 GLKKRL-LNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
GL++RL + L KD Y+ ++ Y RL FE++ II+M F GYFLIV DFI+WAKNN +P
Sbjct: 299 GLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP 358
Query: 360 VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
VGPGRGSGA SLVAY L ITD+DPL+Y+LLFERFLNP RISMPDFD+DFC EGRDRVI Y
Sbjct: 359 VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDY 418
Query: 420 VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
V D YG++AVSQI+TFGTMAAK +RDV RV Y D +SK+IPF+ G +TL A
Sbjct: 419 VADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVG--MTLDKAY 476
Query: 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
++E L + +K++EE ++ E+A ++EGI R G HAGGV+IAP+KL +F P+ E
Sbjct: 477 EQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 536
Query: 540 GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKT--TNFSLNKLPLNDKD 597
G+++Q+DKDD+E GL+KFDFLGL TL+I+ + I + K +++ +PL+DK
Sbjct: 537 GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKP 596
Query: 598 TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
TY+LL+KA T AVFQLES+GMK ++K+ KPD E++IAL++L+RPGP+ ++ +F RK
Sbjct: 597 TYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 656
Query: 656 HGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
HG +YP P + VL TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GKK
Sbjct: 657 HGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 716
Query: 710 KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLK 769
K EM + R F G G+ A IF+ +EKFAGYGFNKSH+ AY L+SY TA+LK
Sbjct: 717 KPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 776
Query: 770 THYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
TH+ + FMAA L+ M +T+K+ L+++ + L I+ P++N S++ F ++ DG
Sbjct: 777 THFPAPFMAAVLTADMQNTDKVVTLIEEC-RHMKLRIVAPDVNNSEFRF--TVDDDG--- 830
Query: 830 KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
+I YGLGAIKG G+ +EAI R + G F LFDF R+D K IN+R + +LI +GA D
Sbjct: 831 RIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALD 890
Query: 889 ---------------CFNEKRYMLVASIDVALKNAEKTKKFIN--QLSLFKND-DNNNLK 930
+ R +L+A+++ A++ AE+T + + + LF
Sbjct: 891 RLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEAD 950
Query: 931 EYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC-TV 989
Y N+ KV + K+ L EK LG L+ H YE E+R+F + ELKP TV
Sbjct: 951 VYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDTQTV 1010
Query: 990 SGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLE 1048
+G+I L++ +G K+ + +DD S +E + ++ + +++L+ + L++V G+V +
Sbjct: 1011 AGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQ 1070
Query: 1049 DRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCKNGL 1102
D F +R+ A+++ + AR + + + +LK LR+ + +
Sbjct: 1071 DDFSGGLRLRAKRVMSLEEARTGLAESLRM----KLHADLLKGDRLRWLGELFNRHRGSC 1126
Query: 1103 PFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
P L Y + K ++F +++V P DDL AL + G N + Y
Sbjct: 1127 PITLDYT-SADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172
>sp|P14567|DPO3A_SALTY DNA polymerase III subunit alpha OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dnaE PE=3 SV=2
Length = 1160
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+F+HLR+HS+YS+IDGL + +++ AA+ PALAITD +NL G++KFY + + GIK
Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PI+G D + NE+ + + L +L NN GY L L+SKAY I +WL +
Sbjct: 64 PIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVE 123
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
K +GLI LSG +GD+G + G + E + FPD +++E+ R + +
Sbjct: 124 LK--EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ + +A LP+VAT+ ++FL+ +F AHE+R I +G L + KR + ++ +Q +
Sbjct: 182 LHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
++ EM +LF DIP A++NT+EIAKRCN+ + G+ LP+FPT ++ D+L+ K+K GL
Sbjct: 242 SEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT-GDMTTEDYLVKKAKEGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ D E K + Y +RL E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+DAVSQI+TFGTMAAK IRDVGRVL Y F D ISKL+P PG +TL+ A + E
Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPG--MTLAKAFEAE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
PQL E + +EEVR LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY E +
Sbjct: 479 PQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
+Q+DK D+E GL+KFDFLGL TL+I++ + I K K L+ +PL+DK +++
Sbjct: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
+L+++ T AVFQLES+GMK+++K +PD FE++IAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD + K VL TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 659 EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
EM + R F+ GA K G+ A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719 EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T K+ LV + + GL ILPP+IN Y+F + +G +I
Sbjct: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDEG---EIV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YG+GAIKG G+ IEAI+ R + G+F LFD R D K +NRR++ LI SGAFD
Sbjct: 833 YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892
Query: 892 EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
R L+ S+ ALK A++ K I Q +F + +Y W ++ L
Sbjct: 893 PHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952
Query: 950 EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
E++ LG L+ H Y EI +++ + L ++ PT T +G++ ++ T RG
Sbjct: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012
Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
+I I +DD S +EV++ +K + +L+++ +LIVSG+V D F +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072
Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
I+ AR Y + ++ + +R + +L ++ L +P LYY + ++F
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131
Query: 1122 LNYKVQPIDDL 1132
++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142
>sp|Q9XDH6|DPO3A_PSEFL DNA polymerase III subunit alpha OS=Pseudomonas fluorescens GN=dnaE
PE=3 SV=1
Length = 1173
Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/1190 (42%), Positives = 740/1190 (62%), Gaps = 60/1190 (5%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M F+HLRLH+EYS++DGL+RI +++A PA+A+TD +N+ ++KFYK+A G
Sbjct: 1 MPASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMGAG 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
IKPI G D+W++N+ + SR+ LLV N GY L EL+S+ +I+ G I EW+
Sbjct: 61 IKPICGADLWLSNKDPDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMVIIEREWV 120
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
+ +GLI LS A G+IG+A+ G AE AR W +FPD FY+EIQR +PN
Sbjct: 121 AEA--NEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEIQRTNRPNDE 178
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
Q+ + +A + P+VAT+ ++F+K+ +F AHE R CI EG L + +R K ++ +Q
Sbjct: 179 EQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQY 238
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
K+ EM +LF D+P AI+NT+EIAKRCN+ ++ GK LP +P P + I+++ S
Sbjct: 239 LKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFD 298
Query: 301 GLKKRL-LNLYKDP-EIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
GL++RL + L KD E Y+ ++ Y RL FE++ II+M F GYFLIV DFIQWAKNN +
Sbjct: 299 GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358
Query: 359 PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
PVGPGRGSGA SLVAY ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC +GRDRVI
Sbjct: 359 PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418
Query: 419 YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
YV ++YG++AVSQI+TFG+MAAK +RDV R + D +SK++PF+ G +TL A
Sbjct: 419 YVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMVPFEVG--MTLEKA 476
Query: 479 IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
++E L + IK +EE ++ E+A+++EG++RNVG HAGGV+IAP+KL +F P+Y E
Sbjct: 477 YEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAG 536
Query: 539 TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDK 596
G+++Q+DKDD+E GL+KFDFLGL TL+I+D + I + K L+ +PL+DK
Sbjct: 537 DGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDK 596
Query: 597 DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRR 654
TY LL+KA T AVFQLES+GMK ++K+ K D E++IAL++L+RPGP+ ++ +F R
Sbjct: 597 PTYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRPGPLQSGMVDDFINR 656
Query: 655 KHGEY-FNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGK 708
KHG YP P + VL+ TYGI++YQEQVMQIAQ++ GY+LG AD+LRRA+GK
Sbjct: 657 KHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716
Query: 709 KKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYL 768
KK EM + R F G + A IF+ +EKFAGYGFNKSH+ AY L+SY TA+L
Sbjct: 717 KKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
Query: 769 KTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKH 828
K HY + FMAA LS M +T+K+ L+++ ++T L + P++N S++ F + +G
Sbjct: 777 KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNTSEFKF--TVNDEG-- 831
Query: 829 KKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFD 888
+I YGLGAIKG G+ +EAI R+ G F +LFDF R+D K IN+R ++ LI SGA D
Sbjct: 832 -RIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890
Query: 889 CF---------------NEKRYMLVASIDVALKNAEKTKKFINQ------LSLFKNDDNN 927
+ R +L+A+++ A+K+AE+T + + LF +D +
Sbjct: 891 RLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGGLFVEEDAD 950
Query: 928 NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSC 987
Y + K + K+ L EK LG L+ H YE EIR+F + +LKP
Sbjct: 951 V---YAIHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007
Query: 988 -TVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
TV+G+I L++ +G K+ I +DD S +E + + +++L+ + +++V G+
Sbjct: 1008 QTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGE 1067
Query: 1046 VLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRF------KCK 1099
V D F +R+ +++ + AR + + LK LR+ + +
Sbjct: 1068 VSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL----KLQTQDLKGDQLRWLGDLLKRHR 1123
Query: 1100 NGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIEY 1148
P + Y + K ++F +++ P D L AL + G N ++Y
Sbjct: 1124 GACPITMEYT-SPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQY 1172
>sp|Q8X8X5|DPO3A_ECO57 DNA polymerase III subunit alpha OS=Escherichia coli O157:H7 GN=dnaE
PE=3 SV=1
Length = 1160
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1151 (43%), Positives = 737/1151 (64%), Gaps = 33/1151 (2%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+F+HLR+HS+YS+IDGL + +++ AA PALAITD +NL G++KFY + + GIK
Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PI+G D + ++ + + L +L NN GY L L+SKAY I +WL
Sbjct: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
+ +GLI LSG +GD+G ++ G + + + + + FPD +++E+ R +P+
Sbjct: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ + +A LP+VAT+ ++F+ ++F AHE+R I +G L + KR + ++ +Q +
Sbjct: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
++ EM +LF DIP A+ NT+EIAKRCN+ + G+ LP+FPT +++ D+L+ ++K GL
Sbjct: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ D E + Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+DAVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP PG +TL+ A + E
Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
PQL E + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY E +
Sbjct: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
+Q+DK D+E GL+KFDFLGL TL+I++ + I K K L+ +PL+DK +++
Sbjct: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
+L+++ T AVFQLES+GMK+++K +PD FE++IAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD + K VL TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
EM + R F GA K G++ A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T K+ LV + + GL ILPP+IN Y+F + DG +I
Sbjct: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YG+GAIKG G+ IEAI+ R K G+F LFD R D K +NRR++ LI SGAFD
Sbjct: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892
Query: 892 EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
R L+ S+ ALK A++ K I Q +F + +Y W ++ L
Sbjct: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952
Query: 950 EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
E++ LG L+ H Y EI +++ + L ++ PT T +G++ ++ T RG
Sbjct: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012
Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
+I I +DD S +EV++ +K +++L+++ +LIVSG+V D F +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072
Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
I+ AR Y + ++ + +R + +L ++ L +P LYY + ++F
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131
Query: 1122 LNYKVQPIDDL 1132
++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142
>sp|P10443|DPO3A_ECOLI DNA polymerase III subunit alpha OS=Escherichia coli (strain K12)
GN=dnaE PE=1 SV=1
Length = 1160
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1151 (43%), Positives = 736/1151 (63%), Gaps = 33/1151 (2%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+F+HLR+HS+YS+IDGL + +++ AA PALAITD +NL G++KFY + + GIK
Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PI+G D + ++ + + L +L NN GY L L+SKAY I +WL
Sbjct: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
+ +GLI LSG +GD+G ++ G + + + + + FPD +++E+ R +P+
Sbjct: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ + +A LP+VAT+ ++F+ ++F AHE+R I +G L + KR + ++ +Q +
Sbjct: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
++ EM +LF DIP A+ NT+EIAKRCN+ + G+ LP+FPT +++ D+L+ ++K GL
Sbjct: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ D E + Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+DAVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP PG +TL+ A + E
Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
PQL E + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY E +
Sbjct: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
+Q+DK D+E GL+KFDFLGL TL+I++ + I K K L+ +PL+DK +++
Sbjct: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
+L+++ T AVFQLES+GMK+++K +PD FE++IAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD + K VL TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
EM + R F GA K G++ A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T K+ LV + + GL ILPP+IN Y+F + DG +I
Sbjct: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YG+GAIKG G+ IEAI+ R K G+F LFD R D K +NRR++ LI SGAFD
Sbjct: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892
Query: 892 EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
R L+ S+ ALK A++ K I Q +F + +Y W ++ L
Sbjct: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952
Query: 950 EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
E++ LG L+ H Y EI +++ + L ++ PT T +G++ ++ T RG
Sbjct: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012
Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
+I I +DD S +EV++ +K + +L+++ +LIVSG+V D F +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072
Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
I+ AR Y + ++ + +R + +L ++ L +P LYY + ++F
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131
Query: 1122 LNYKVQPIDDL 1132
++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142
>sp|Q8FL05|DPO3A_ECOL6 DNA polymerase III subunit alpha OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dnaE PE=3 SV=1
Length = 1160
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1151 (43%), Positives = 735/1151 (63%), Gaps = 33/1151 (2%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+F+HLR+HS+YS+IDGL + +++ AA PALAITD +NL G++KFY + + GIK
Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PI+G D + ++ + + L +L NN GY L L+SKAY I +WL
Sbjct: 64 PIVGADFNVQCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWL-- 121
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
+ +GLI LSG +GD+G ++ G + + + + + FPD +++E+ R +P+
Sbjct: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ + +A LP+VAT+ ++F+ ++F AHE+R I +G L + KR + ++ +Q +
Sbjct: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
++ EM +LF DIP A+ NT+EIAKRCN+ + G+ LP+FPT +++ D+L+ ++K GL
Sbjct: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ D E + Y +RL E++ I +M F GYFLIV +FIQW+K+N +PVGP
Sbjct: 301 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++V D
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+DAVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP PG +TL+ A + E
Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
PQL E + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY E +
Sbjct: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKDTYN 600
+Q+DK D+E GL+KFDFLGL TL+I++ + I K K L+ +PL+DK +++
Sbjct: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
+L+++ T AVFQLES+GMK+++K +PD FE++IAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD + K VL TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
EM + R F GA K G++ A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LK HY
Sbjct: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T K+ LV + + GL ILPP+IN Y+F + DG +I
Sbjct: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDG---EIV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YG+GAIKG G+ IEAI+ R K G+F LFD R D K +NRR++ LI SGAFD
Sbjct: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892
Query: 892 EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
R L+ S+ ALK A++ K I Q +F + +Y W ++ L
Sbjct: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952
Query: 950 EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELKPTYS---CTVSGIITELKLKTTYRG- 1004
E++ LG L+ H Y EI +++ + L ++ PT T +G++ ++ T RG
Sbjct: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGN 1012
Query: 1005 KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFD 1064
+I I +DD S +EV++ +K + +L+++ +LIVSG+V D F +++ A ++ D
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072
Query: 1065 INVARILYGKKFSV-MFNRTFNISILKKIL--LRFKCKNGLPFVLYYCINKSIKYEMKFP 1121
I+ AR Y + ++ + +R + +L ++ L +P LYY + ++F
Sbjct: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARARLRFG 1131
Query: 1122 LNYKVQPIDDL 1132
++V P D L
Sbjct: 1132 ATWRVSPSDRL 1142
>sp|Q9CPK3|DPO3A_PASMU DNA polymerase III subunit alpha OS=Pasteurella multocida (strain
Pm70) GN=dnaE PE=3 SV=1
Length = 1159
Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/1158 (42%), Positives = 733/1158 (63%), Gaps = 49/1158 (4%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+F+HLR+HS++S+I+G+ ++ +I+A +++ A+ +TD +N G+++FY A + G+K
Sbjct: 4 PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAY---IENINYGRAEIRIEW 119
PIIG DV + +E+ +P L LL KNN GY + LLSKAY +++ Y + W
Sbjct: 64 PIIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQDLPY----LDQAW 119
Query: 120 LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
L +++ +G+I LSG H GD+G + G E+ + FPD+FY+ + R +
Sbjct: 120 LAEHR--EGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSLSRTGRYEE 177
Query: 180 NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
+ + +A LP+VAT+ + FL + +F AHE+R I + L + KR K +T +Q
Sbjct: 178 ERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKRPKLYTNQQ 237
Query: 240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
F+++ EM LF D+PSA++NT+ IA+RCN+ + G+ LP+FPT +++ DFL+ KSK
Sbjct: 238 YFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPT-GDLSTEDFLVKKSK 296
Query: 300 HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
GL++RL L+ D ++ + + Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IP
Sbjct: 297 EGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 356
Query: 360 VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI +
Sbjct: 357 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDH 416
Query: 420 VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
V + YG+ AVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP PG +TL+ A
Sbjct: 417 VAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 474
Query: 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
EPQL ++EEV+ LI++A+++EG+ RN G HAGGV+I+P + +F PLY
Sbjct: 475 AAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 534
Query: 540 GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
++ +DK+D+E GL+KFDFLGL TL+I+ + + INT+ + +PL+
Sbjct: 535 HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIK---WALDMINTRLAKEGKPPVDIATIPLD 591
Query: 595 DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
D ++ LLK++ T AVFQLES+GMK+++K +PD FE+IIAL++L+RPGP++ +++NF
Sbjct: 592 DPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFI 651
Query: 653 RRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
RKHG E YPDP K +L TYG++VYQEQVMQIAQ L GY+LG ADLLRRA+
Sbjct: 652 DRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAM 711
Query: 707 GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
GKKK EM R+ F+ GAI+ G+ A +IF+ +EKFAGYGFNKSH+ AYAL+SY T
Sbjct: 712 GKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 771
Query: 767 YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
+LKTHY + FMAA ++ MD+T+KI L + ++ GL + PP+IN K++F S
Sbjct: 772 WLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVAPPDINTGKHHF-----SVN 825
Query: 827 KHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
++ +I YG+GAIKG G+ IEA+++ R + G F +LFD R+D K INRR SLI SG
Sbjct: 826 EYGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSG 885
Query: 886 AFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSK 943
AFD R L +++ ALK +++ K + Q +F ++ Y P WS+
Sbjct: 886 AFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRWSE 945
Query: 944 KQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKT 1000
K L E++ LG LS H Y E+ + L +L P TVSG++ +
Sbjct: 946 KVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAV 1005
Query: 1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
T +G ++ I +DD S +++ + + +K + L+++ ++IVSG+V D F ++++
Sbjct: 1006 TKKGNRLGIATLDDRSGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSV 1065
Query: 1060 EKIFDINVARILYGKKFSVMFNR-----TFNISILKKILLRFKCKNGLPFVLYYCINKSI 1114
++ ++ AR Y K ++ + TF I LK +L + LP +YY + +
Sbjct: 1066 RELMSLDEARSRYAKSLAICLSEENMKPTF-IRELKALLTPYSGGT-LPIYVYYA-STAG 1122
Query: 1115 KYEMKFPLNYKVQPIDDL 1132
+ +K + + V P D L
Sbjct: 1123 QCRVKMGVQWSVNPTDQL 1140
>sp|P52022|DPO3A_VIBCH DNA polymerase III subunit alpha OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dnaE PE=3
SV=3
Length = 1159
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/1105 (44%), Positives = 715/1105 (64%), Gaps = 36/1105 (3%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+FIHLR+HS++S++DGL ++ +++ A PA+A+TD +NL G++KFY +A+N G+K
Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PIIG D + +E + ++L LL KNN GY L L+SKAY+ + I WL
Sbjct: 64 PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL-- 121
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
++ +GLI LSG G++G A+ G E + F D+FY+E+ R + +
Sbjct: 122 VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+ +++A +LP+VAT+ + F+ + F AHE+R I +G L + +R K ++ +Q +
Sbjct: 182 LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
+++EM +LF DIP A+ N++EIAKRCN+ + G+ LP FPT + I DFL+ KS+ GL
Sbjct: 242 SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL L+ DPE+ + Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301 EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL Y+LLFERFLNP R+SMPDFD+DFC + RD+VI +V +
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+DAVSQI+TFGTMAAK IRDVGRVL + F D ISKL+P PG +TL A E
Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFIAE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
P L E +EEV++LI+ + +EG RN G HAGGV+I+P+ + +F P+Y +
Sbjct: 479 PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN--FSLNKLPLNDKDTYN 600
+Q+DK+D+E GL+KFDFLGL TL+I+D + + K + +PL+D ++
Sbjct: 539 TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
L+ A T AVFQLES+GMK ++K +PD FE+IIAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD + K++L TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKKK
Sbjct: 659 EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
EM + R FQ GA K G+ A +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTHY
Sbjct: 719 EMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T K+ LV D K GL++LPP+IN Y F ++ +G I
Sbjct: 779 PAEFMAAVMTADMDNTEKVVGLV-DECKNMGLTVLPPDINSGLYRFN--VDDNG---AIV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YG+GAIKG G+ IEAI+ R K G+F +LFDF RID K +N+R+I LI +GA D
Sbjct: 833 YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892
Query: 892 EKRYMLVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
R ++AS+D A++ A + + Q +F + + Y +VP W +K L
Sbjct: 893 PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952
Query: 950 EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPT---YSCTVSGIITELKLKTTYRG-K 1005
E++ LG L+ H Y E+ ++ L+E PT S TV+G++ ++ TT RG +
Sbjct: 953 ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012
Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
I ++ +DD S +EV++ ++ ++ L+++++L+VSG+V D F ++++A ++ D+
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072
Query: 1066 NVARILYGKKFSVMFNRTFNISILK 1090
AR +KF+ R +ISIL+
Sbjct: 1073 GSAR----EKFA----RGLSISILQ 1089
>sp|P43743|DPO3A_HAEIN DNA polymerase III subunit alpha OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaE PE=3 SV=1
Length = 1159
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1157 (42%), Positives = 728/1157 (62%), Gaps = 33/1157 (2%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+FIHLR H+++S+ID ++++ +++A A + A+ +TD +N G++ FY + G+K
Sbjct: 5 PRFIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
PIIG DV + + + + L LL KNN GY + LLSKAY N I +WL
Sbjct: 65 PIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWL-- 121
Query: 123 NKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQ 182
+++DG+I LSG GD+G + E+ + + F D+FY+ + R +PN
Sbjct: 122 IEHRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERY 181
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
IQ + +A +LP+VAT+ + FL +F AHE+R I +G L + KR K +T +Q F+
Sbjct: 182 IQAALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFR 241
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
++ +M KLF DIPSA++NT+ IA+RC++ L G+ LP+FPT +++ DFL+ KSK GL
Sbjct: 242 SEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPT-GDLSTEDFLVQKSKEGL 300
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++RL+ L+ D ++ ++ +Y +RLQ E++ I +M F GYFLIV +FIQW+K+N IPVGP
Sbjct: 301 EERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC +GRDRVI++V +
Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
YG+ AVSQI+TFGTMAAK IRDVGRVL Y F D ISKLIP PG +TL+ A + E
Sbjct: 421 TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFETE 478
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
PQL ++EEVR LI +A+++EG+ RN G HAGGV+I+P+ + +F PLY +
Sbjct: 479 PQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPV 538
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFI--KKINTKTTNFSLNKLPLNDKDTYN 600
+ +DK+D+E GL+KFDFLGL TL+I+ + I + + + +PL+D +++
Sbjct: 539 THFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDPESFE 598
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG- 657
LLK++ T AVFQLES+GMK+++K +PD FE+IIAL++L+RPGP+ ++ NF RKHG
Sbjct: 599 LLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658
Query: 658 EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
E +YPD K +L TYGI++YQEQVMQIAQ+L GY+LG ADLLRRA+GKKK
Sbjct: 659 EEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPE 718
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
EM + R F+ GA K G+ + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +LKTH+
Sbjct: 719 EMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHF 778
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAA ++ MD+T+KI L + ++ GL + PP+IN+ K++F S + +I
Sbjct: 779 PAEFMAAVMTSEMDNTDKIVGLYDECLR-MGLKVTPPDINIGKHHF-----SVNEQGEIV 832
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YG+GAIKG G+ IEA+V R + G F +LFD R+D K INRR SLI SGAFD
Sbjct: 833 YGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLG 892
Query: 892 EKRYMLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
R L +++ AL+ +++ K + Q +F + Y P +++KQ L
Sbjct: 893 PHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDG 952
Query: 950 EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRG-K 1005
E++ LG LS H Y E+ + L +L P TV+G++ ++ T +G +
Sbjct: 953 ERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNR 1012
Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI 1065
+ I +DD S +++ + + E+ L+++ +++ SG+V D F +++ ++ +
Sbjct: 1013 LGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTL 1072
Query: 1066 NVARILYGKKFSVMFN-RTFNISILK--KILLRFKCKNGLPFVLYYCINKSIKYEMKFPL 1122
+ AR Y K ++ + S +K K LL LP +YY K + ++ +
Sbjct: 1073 DEARSRYVKSLAISLSEHQITPSFIKQFKALLEPVSGGTLPINVYYQSPKG-RALLRLGV 1131
Query: 1123 NYKVQPIDDLKLALINL 1139
+ + P D++ L+NL
Sbjct: 1132 QWSIIPTDEILTELVNL 1148
>sp|P57332|DPO3A_BUCAI DNA polymerase III subunit alpha OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaE PE=3 SV=1
Length = 1161
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/1146 (44%), Positives = 743/1146 (64%), Gaps = 52/1146 (4%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P+FIHL +HS+YS+IDGL + D+++ AA+ PA+AITD +NL+G+IKFY A+ G+K
Sbjct: 4 PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63
Query: 63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIEN-INYGRAEIRIEWL- 120
PIIG V +++ N + ++L LL GY L L+S+AY + ++ I +W
Sbjct: 64 PIIGITVNFFSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVHNNHVTIEKKWFS 123
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
E NK GLI LSG G++G + NG++ + + K FPD++Y+E+ R + N
Sbjct: 124 EINK---GLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLELFRTNRDNEE 180
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
+ ++++ + +PIVAT+ + FL + +F H++R I EGEIL ++K ++ +Q
Sbjct: 181 TYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSKIQNNYSNQQF 240
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
KT EM LF DIP A+ N++EIAKRCN+ + GK LP+F T K I++ +LI ++
Sbjct: 241 LKTTEEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGK-ISVEKYLIKEAYK 299
Query: 301 GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
G+KKRL + Y D E YK +Y RL E+ I KM F GYFLIV +FIQWAK+N+IPV
Sbjct: 300 GIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIVMEFIQWAKDNNIPV 359
Query: 361 GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
GPGRGSGA SLVAY+L+IT++DPLS+NLLFERFLNP RISMPDFDIDFC E RD+VI +V
Sbjct: 360 GPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDIDFCMEKRDQVIDHV 419
Query: 421 KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
+ YGK+AV+QI+TFGT+ AK IRDVGRVL Y F + +SKL+P PG ITL A
Sbjct: 420 SEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVPLDPG--ITLKEAFS 477
Query: 481 EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
+E +L KN E+V+ LI++AK++EG RN+G HAGGV+I+P+K+ +FCPLY E
Sbjct: 478 KESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKITDFCPLYCDEKGNN 537
Query: 541 IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTT-----NFSLNKLPLND 595
++Q+DK+DIE IGL+KFDFLGL TL+I+ Y ++ INTK ++N +PL+D
Sbjct: 538 PVTQFDKNDIEYIGLVKFDFLGLRTLTIIS---YAVEMINTKLNLNKKRTININSIPLDD 594
Query: 596 KDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCR 653
+ LLK + T VFQLES GMK+++K +PD FE++IAL++L+RPGP+ ++ NF
Sbjct: 595 AKCFKLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIN 654
Query: 654 RKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIG 707
RKHG E +YPD + K +L TYGI++YQEQVM+IAQ+L GY+LG AD+LRRA+
Sbjct: 655 RKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLGSADILRRAMS 714
Query: 708 KKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAY 767
KK +M E R F+ GA G+ K + +IF+ +EKFAGYGFNKSH+ AYAL+SY T +
Sbjct: 715 KKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVAYALVSYQTLW 774
Query: 768 LKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGK 827
LK+HY + F+AA ++ +D+T KI IL+ +++ G+ I+PPNINLSKY F+ + D
Sbjct: 775 LKSHYPAEFIAAAMTSDIDNTEKIVILINESL-NMGVKIIPPNINLSKYEFYVNDQGD-- 831
Query: 828 HKKIRYGLGAIKGTGKSTIEAIVTERKFG-FFTNLFDFTKRIDKKYINRRIINSLINSGA 886
I YGLGAIKG GK++++ ++ ER+ FF +LFD RID + I RR++ LI SG+
Sbjct: 832 ---IVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLIMSGS 888
Query: 887 FDCFNEKRYMLVASIDVAL---KNAEKTKKFINQ--LSLFKNDDNNNLKEYLNYVKVPSW 941
DCF++ R L+ SID A+ K + + K F +F+N+ N K L + P
Sbjct: 889 CDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNLVCP-- 946
Query: 942 SKKQELIEEKKVLGFCLSEHIFCIYETEIRQFI-PIYLSEL---KPTYSCTVSGIITELK 997
+K +L E +VLGF L+ H Y+ E+ ++ + LS+L K V+GII +K
Sbjct: 947 -EKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVSIK 1005
Query: 998 LKTTY-RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
+K T + +I I+V+DDN++ +EV+I +L ++++K N+LL V G + KNI+
Sbjct: 1006 IKITKNKNRIAILVLDDNTSRLEVVIFTELLNAYESLVKLNKLLFVHGMLNVSFIDKNIK 1065
Query: 1057 INAEKIFDINVARILYGKKFSVMFNRT-FNISILKKI--LLRFKCKNGLPFVLYY----- 1108
+ A + D++V R Y K ++ N+ NI L + L + K +P +++
Sbjct: 1066 MTAYALIDLSVLRKKYINKLIIILNKEKTNIFFLNNLYECLDKQSKGNIPVFIFFDNKEV 1125
Query: 1109 CINKSI 1114
C+NK +
Sbjct: 1126 CLNKKL 1131
>sp|Q87EY0|DPO3A_XYLFT DNA polymerase III subunit alpha OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=dnaE PE=3 SV=1
Length = 1193
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1165 (41%), Positives = 697/1165 (59%), Gaps = 78/1165 (6%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAA-------ANDYQ-------PALAITDLSNLFGII 50
F+HL +H+E+S+ D +R+ + E A AN PALA+TDL+NLF +I
Sbjct: 6 FVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLFALI 65
Query: 51 KFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENIN- 109
KFYK+A GIKPI G D+ I P + LL +++ GYL L +L+S+ ++E
Sbjct: 66 KFYKAAETVGIKPISGADLLIAEP--EHPPWGMTLLCRDHAGYLNLSQLISRGWLEGHRP 123
Query: 110 YGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYI 169
G + +W+ + L AL G H G + GR D+AE W +F D ++
Sbjct: 124 EGGVAVHPDWV--RDHHKNLFALIGRH-SLAGQLLAKGRADLAEQQLADWQHVFGDGLHL 180
Query: 170 EIQRF----KQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEI 225
E+ R ++P F +Q +A +P++A++ ++FL +++FLAHE R CIA G +
Sbjct: 181 ELTRTGRDGEEPFNQFALQ----VAGIRGIPVIASNDVRFLVQSDFLAHEARVCIASGRM 236
Query: 226 LSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP 285
L + KR + ++++Q ++ EM LF DIP A+ NT +A+RCN+++ G LP +P P
Sbjct: 237 LDDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVP 296
Query: 286 KNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLI 345
+ ++ ++ +S GL+ RLL K P + Y RL+FE++TIIKM FSGYFLI
Sbjct: 297 NDETLDSWIRKQSHEGLEARLL---KHPLAPGQTREDYVTRLEFELDTIIKMGFSGYFLI 353
Query: 346 VSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFD 405
V+DFIQW K IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFD
Sbjct: 354 VADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNPERVSMPDFD 413
Query: 406 IDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLI 465
IDFC E RD VI YV +YG++ VSQI+T+GTMAAK +RDVGRVL Y DS++KLI
Sbjct: 414 IDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSVAKLI 473
Query: 466 PFKPGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGG 518
P G ITL +A+ E +L +R + EE+V++L+ LA+Q+E + RN G HAGG
Sbjct: 474 PSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGG 531
Query: 519 VLIAPSKLINFCPLYKQEGMTG----IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIY 574
V+IAP+ L FCPL+ + G ++Q+DK+D+EE+GL+KFDFLGL TL+I+D +
Sbjct: 532 VVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVK 591
Query: 575 FIKKINTKTT--NFSLNKLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
I K + + + LPL+D TY ++ NT AVFQ ES GM+ +LK+A+PD FE
Sbjct: 592 AINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLKDARPDRFE 651
Query: 632 EIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
++IAL+SLYRPGPMDLI F RKHG + YPDPRTK++L +TYGIMVYQEQVMQ+AQI
Sbjct: 652 DLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQEQVMQMAQI 711
Query: 691 LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
+GGYSLG ADLLRRA+GKK +EM +HR+ F+ GA K G+ KA+EIF+ +EKFAGYGF
Sbjct: 712 VGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFAGYGF 771
Query: 751 NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
NKSHA AYAL+SY TA+LK HY + FMAA LS MD+T+K+ + +A + L +L PN
Sbjct: 772 NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEA-RNLNLKVLRPN 830
Query: 811 INLSKYYFFPIIESDGKHKK-IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRI 868
IN S Y F + H I+YGLGAIKG G+S EAIV ER +G +T+L DF R+
Sbjct: 831 INHSAYMF------EATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTRV 884
Query: 869 DKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDN 926
+NRR + ++I++GA D + R ++ + +K E+ ++ Q SLF N D
Sbjct: 885 TSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNADP 944
Query: 927 NNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL----- 981
L+ + W + L E++ LG S H F Y ++++ + L+
Sbjct: 945 GTPVIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERI 1004
Query: 982 ----------KPTYSCTVSGIITELKLKTTYRGKILIIV-IDDNSNSVEVIINNQLYEKN 1030
K T+ V+ I+ L + +G + V ++D +E + +
Sbjct: 1005 LGSQQRGNGEKRTWQPEVNTILAGLVVSVRRKGDSQVFVQLEDGRGRIECSAFSDALAEF 1064
Query: 1031 KNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKK--FSVMFNRTFNISI 1088
++L + +LIV G + ED F + + +D Y ++ V +
Sbjct: 1065 GHLLTRDRILIVKGGLREDEFNGGYSLRIRQCWDYAQLCTDYAQRLLLRVDLRTSHAWER 1124
Query: 1089 LKKILLRFKCKNGLPFVLYYCINKS 1113
+ IL R++ N P L +N +
Sbjct: 1125 IDAILARYRPGN-TPLRLDLLLNST 1148
>sp|Q8K9S3|DPO3A_BUCAP DNA polymerase III subunit alpha OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaE PE=3 SV=1
Length = 1161
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/1153 (44%), Positives = 749/1153 (64%), Gaps = 58/1153 (5%)
Query: 2 IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
+ +F+HL +HS+YSI+DGL + D+I+ + N AL+ITD +NL+G IKFY +A+ G+
Sbjct: 3 LEEFVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKWGL 62
Query: 62 KPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIE--W 119
KPIIG V +E+ + + L LL N +GY L L+S+AY + + + IE W
Sbjct: 63 KPIIGVTVKFFSELIKNELTELTLLATNQDGYKNLILLISRAYKKGY-FCEKYVTIEKKW 121
Query: 120 LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
L ++ +GLI LSG G+IG + G+ + + + K F +Y+E+ R + N
Sbjct: 122 L--SELNNGLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELIRTYRENE 179
Query: 180 NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
+ ++++ + N+P+VAT+ + FL K +F H++R I EG L +K ++K Q
Sbjct: 180 EKYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQNNYSKHQ 239
Query: 240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
KT+ EM LF DIP AI N++EI+KRCN+ ++ G+ LP+F T K I+I ++LI KS
Sbjct: 240 FLKTEKEMCFLFSDIPEAIINSVEISKRCNVFIKSGQYFLPQFNTRK-ISIENYLIQKSN 298
Query: 300 HGLKKRLLNLYK--DPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
GLKKRL + +K D EI+ L+YK RL E+ I KM F YFLIV +FIQWAK+N+
Sbjct: 299 KGLKKRLESNFKKVDKEIF----LKYKNRLDTELGIINKMGFPSYFLIVMEFIQWAKDNN 354
Query: 358 IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
IPVGPGRGSGA SLVAY L+IT++DPL ++LLFERFLNP RIS+PDFDIDFC E RDRVI
Sbjct: 355 IPVGPGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFCMEKRDRVI 414
Query: 418 QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
++V YG+++V+QI+TFGTM AK IRDVGRVL Y F +++SKL+P PG ITL +
Sbjct: 415 EHVVHTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDPG--ITLKD 472
Query: 478 AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEG 537
A + +L K++E+++ LI+++K++EG+ RNVG HAGGV+I+PSK+ +FCP+Y E
Sbjct: 473 AFSKNSELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDFCPVYCDEK 532
Query: 538 MTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKK----INTKTTNFSLNKLPL 593
++Q+DK+DIE +GL+KFDFLGL TL+I++ + I K N KT N +N +PL
Sbjct: 533 GNNPVTQFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTIN--INSIPL 590
Query: 594 NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNF 651
N+ + LLKK T +FQLES GMK+++K +PD FE+IIALI+L+RPGP+ ++ NF
Sbjct: 591 NESKCFLLLKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQSGMVDNF 650
Query: 652 CRRKHG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
RKHG E +YPD + K VL TYGI++YQEQVMQIAQIL GY+LG+AD+LRRA
Sbjct: 651 INRKHGYEEISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKADILRRA 710
Query: 706 IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
+ KK +M E R F GA K G+++ A +IF+ +EKFAGYGFNKSH+ AYAL+SY T
Sbjct: 711 MSKKNIKDMAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYALVSYQT 770
Query: 766 AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESD 825
+LK HY S FMA+ ++ +D+T+KI +LV ++I+ G+ I+PPNINLSKY F+
Sbjct: 771 LWLKAHYPSEFMASAMTSDIDNTDKIVMLVNESIQM-GIKIIPPNINLSKYEFYV----- 824
Query: 826 GKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINS 884
K I YGLGA+KG G++ I +V ER K G F++LFD R D I R+++ LI S
Sbjct: 825 DHTKNIVYGLGAVKGIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMS 884
Query: 885 GAFDCFNEKRYMLVASIDVALKNAE---KTKKFINQLSLFKNDDNNNLKEYLNYVK---- 937
G+ DCFN+ R L++ I+ A+K ++ K KKF Q SLF + KE LN +K
Sbjct: 885 GSCDCFNKNRNYLLSLIEDAIKASKEHFKIKKF-QQESLF-----GSFKEELNILKKNNN 938
Query: 938 -VPSWSKKQELIE-EKKVLGFCLSEHIFCIYETEIRQFI-PIYLSELK----PTYSCTVS 990
+ S+S +++ +E E KVLG L+ H Y E++ ++ S+LK V+
Sbjct: 939 LLNSFSDEEKKLENEHKVLGLYLTGHPIDRYAEELKYYLNNSTFSKLKLFNHTKKKIMVA 998
Query: 991 GIITELKLKTTY-RGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLED 1049
GI+ +K K T + +I+I+++DD++ +EV+I +L ++ +++ N++LIVSG + +
Sbjct: 999 GIVVSIKTKVTKNKNRIVILILDDSTGLLEVVIFKRLLNISEKLIQLNKILIVSGFLNTN 1058
Query: 1050 RFLKNIRINAEKIFDINVARILYGKKFSVMFN-RTFNISILKKILLRFKCK-NGLPFVLY 1107
KN+++ A I ++N+AR Y K +++ + + LKKI F+ + G+ V
Sbjct: 1059 FISKNLKMTAYDIMNLNLAREKYLDKLTIVLTEKQRDKCFLKKIYQFFQNQTTGIVPVYI 1118
Query: 1108 YCINKSIKYEMKF 1120
+C K + E K
Sbjct: 1119 FCKKKDLDSEYKL 1131
>sp|Q9PGU4|DPO3A_XYLFA DNA polymerase III subunit alpha OS=Xylella fastidiosa (strain 9a5c)
GN=dnaE PE=3 SV=2
Length = 1193
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/1164 (41%), Positives = 698/1164 (59%), Gaps = 76/1164 (6%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAA-------ANDYQ-------PALAITDLSNLFGII 50
F+HL +H+E+S+ D +R+ + E A AN PALA+TDL+NLF +I
Sbjct: 6 FVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLFALI 65
Query: 51 KFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENIN- 109
KFYK+A GIKPI G D+ I P + LL +++ GYL L +L+S+ ++E
Sbjct: 66 KFYKAAETVGIKPISGADLLIAEP--EHTPWGMTLLCRDHAGYLNLSQLISRGWLEGHRP 123
Query: 110 YGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYI 169
G + +W+ + L AL G H G GR D+AE W +F + ++
Sbjct: 124 EGGVAVHPDWV--RDHHKNLFALIGRH-SLAGQLFAKGRADLAEQQLADWQHVFGNGLHL 180
Query: 170 EIQRF----KQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEI 225
E+ R ++P F +Q +A +P++A++ ++FL ++FLAHE R CIA G +
Sbjct: 181 ELTRTGRDGEEPFNQFALQ----VAGIRGIPVIASNDVRFLVPSDFLAHEARVCIASGRM 236
Query: 226 LSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTP 285
L + KR + ++++Q ++ EM LF DIP A+ NT +A+RCN+++ G LP +P P
Sbjct: 237 LDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVP 296
Query: 286 KNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLI 345
+ ++ ++ +S GL+ RLL K P + Y RL+FE++TIIKM FSGYFLI
Sbjct: 297 NDETLDSWIRKQSHEGLEARLL---KHPLAPGQTREDYVTRLEFELDTIIKMGFSGYFLI 353
Query: 346 VSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFD 405
V+DFIQW K IP+GPGRGSGA SLVA++L ITD+DPL YNLLFERFLNP R+SMPDFD
Sbjct: 354 VADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLNPERVSMPDFD 413
Query: 406 IDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLI 465
IDFC E RD VI YV +YG++ VSQI+T+GTMAAK +RDVGRVL Y DSI+KLI
Sbjct: 414 IDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSIAKLI 473
Query: 466 PFKPGKLITLSNAIKE-------EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGG 518
P G ITL +A+ E +L +R + EE+V++L+ LA+Q+E + RN G HAGG
Sbjct: 474 PNTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGG 531
Query: 519 VLIAPSKLINFCPLYKQEGMTG----IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIY 574
V+IAP+ L FCPL+ + G ++Q+DK+D+EE+GL+KFDFLGL TL+I+D +
Sbjct: 532 VVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVK 591
Query: 575 FIKKINTKTT--NFSLNKLPLNDKDTY-NLLKKANTVAVFQLESQGMKNMLKEAKPDYFE 631
I K + + + LPL+D TY ++ NT AVFQ ES GM+ +LK+A+PD FE
Sbjct: 592 AINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLLKDARPDRFE 651
Query: 632 EIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQI 690
++IAL+SLYRPGPMDLI F RKHG + YPDPRTK++L +TYGIMVYQEQVMQ+AQI
Sbjct: 652 DLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQEQVMQMAQI 711
Query: 691 LGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGF 750
+GGYSLG ADLLRRA+GKK +EM +HR+ F+ GA K G+ KA+EIF+ +EKFAGYGF
Sbjct: 712 VGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFAGYGF 771
Query: 751 NKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPN 810
NKSHA AYAL+SY TA+LK HY + FMAA LS MD+T+K+ + +A + L +L PN
Sbjct: 772 NKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEA-RNLNLKVLRPN 830
Query: 811 INLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRID 869
IN S Y F +D I+YGLGAIKG G+S EAIV ER +G +T+L +F R+
Sbjct: 831 INHS-VYMFEATHAD----TIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCTRVA 885
Query: 870 KKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKT--KKFINQLSLFKNDDNN 927
+NRR + ++I++GA D + R ++ + +K E+ ++ Q LF N D +
Sbjct: 886 SAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNADPS 945
Query: 928 NLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSEL------ 981
L+ + W + L E++ LG S H F Y ++++ + L+
Sbjct: 946 TPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERIL 1005
Query: 982 ---------KPTYSCTVSGIITELKLKTTYRGKILIIV-IDDNSNSVEVIINNQLYEKNK 1031
K T+ V+ I+ L + +G + V ++D +E + +
Sbjct: 1006 GSQQRGNGEKRTWHPEVNTILAGLVVSVRRKGDSQVFVQLEDGRGRIECSAFSDALAEFG 1065
Query: 1032 NILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFN-RTFNI-SIL 1089
++L + +LIV G + ED F + + +D Y ++ + + RT + +
Sbjct: 1066 HLLTRDRILIVKGGLREDEFNDGYSLRIRQCWDYTQLCTDYAQRLLLRVDLRTSDAWERI 1125
Query: 1090 KKILLRFKCKNGLPFVLYYCINKS 1113
IL R++ N P L +N +
Sbjct: 1126 DAILARYRPGN-TPLRLDLLLNST 1148
>sp|Q89AN8|DPO3A_BUCBP DNA polymerase III subunit alpha OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=dnaE PE=3 SV=1
Length = 1077
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/1089 (42%), Positives = 684/1089 (62%), Gaps = 47/1089 (4%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
+F+HLR+HS++S+IDGL++ N + + A PA+AITD SNL G+IKFY++ +++GIKP
Sbjct: 5 KFVHLRVHSDFSMIDGLVKPNILAQHAKKLNMPAIAITDSSNLHGMIKFYRATFSQGIKP 64
Query: 64 IIGCDVWITNE---IENKKPSRLLLLVKNNNGYLQLCELLSKAY-IENINYGRAEIRIEW 119
IIG D + + + + +++ LL NN+GY L LLS+AY I N I EW
Sbjct: 65 IIGVDFKVFPDDKYVSSNMFTKITLLAVNNSGYRNLLLLLSRAYKIGYNNKVGVFITKEW 124
Query: 120 LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
L + ++ G+I LSG GDIG+ + N + N +++ F + +Y+EI R + N
Sbjct: 125 LVE--HRKGIILLSGGCYGDIGVNLLNNNKSLVLNCLSFYNRFFENFYYLEIMRIGRSNE 182
Query: 180 NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
I + +I++ +P+VAT+ + FL K +F H++R I G + + +T +Q
Sbjct: 183 EQYISRIKDISAREGIPVVATNEVCFLNKQDFEVHKIRVFINLGCTIKSNSAHYNYTPQQ 242
Query: 240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
+T +EM +LF D P AI NTIEI+KRCN+ L+F K LPKF T N+N DFL+ K+K
Sbjct: 243 FMRTSNEMEELFLDFPDAISNTIEISKRCNVILKFNKYFLPKFQTG-NMNTTDFLVMKAK 301
Query: 300 HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
G++KRL+ L+ + + RY RL E+ I KM F GYFLIV +FI WAK N IP
Sbjct: 302 KGMQKRLIQLFPNKQDRINNVNRYYTRLLSELNVINKMGFPGYFLIVMEFINWAKKNDIP 361
Query: 360 VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
VGPGRGSGA SLV+Y L+IT++DPLS++LLFERFLNP R+ MPD D+DFC + RD+VI++
Sbjct: 362 VGPGRGSGAGSLVSYVLNITELDPLSFDLLFERFLNPERVFMPDLDVDFCMDKRDKVIEH 421
Query: 420 VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
V YG+++VSQI++FGT+ AK IRDVGRV Y F + +SKLIP G +TL AI
Sbjct: 422 VSKIYGEESVSQIISFGTLTAKSVIRDVGRVFGFPYGFLNRLSKLIPLDLG--MTLEKAI 479
Query: 480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
++ +L E K +++VR+LI +AK++EGI RNV HAGGV+I+P K+ +F PLY E
Sbjct: 480 SQKVELLELYKFDKDVRELINIAKRLEGITRNVSKHAGGVVISPKKITDFVPLYYDENGN 539
Query: 540 GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTN-----FSLNKLPLN 594
++Q+DK+DI GL+KFDFLGL TL+++ T +K INTK +N ++N + L
Sbjct: 540 NPVTQFDKNDIGYTGLVKFDFLGLKTLTVIHGT---VKMINTKFSNNQKKLININTISLK 596
Query: 595 DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFC 652
DK+ + L+ A T+AVFQLES GMK++++ KPD FE+++AL++L+RPGP+ ++ NF
Sbjct: 597 DKNCFKFLQTAQTIAVFQLESNGMKDLIRRLKPDSFEDLVALVALFRPGPLQSGMVDNFI 656
Query: 653 RRKHG-EYFNYPDPRT-----KDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
RKHG E YP+ K +L TYGI++YQEQVM+I Q+ Y+LG ADLLRR +
Sbjct: 657 NRKHGKEKILYPNKECQHALLKPILKSTYGIILYQEQVMKIVQVFANYTLGHADLLRRTM 716
Query: 707 GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
KK EM +HR+ F+NGA + ++ + +IFN +E+FAGY FNKSH+ +YAL+SY T
Sbjct: 717 EKKDQVEMNKHREMFKNGAKENNINTKLSTKIFNLLEQFAGYAFNKSHSVSYALVSYQTL 776
Query: 767 YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDG 826
+LK +Y FMA+ ++ +D+ KI +L+ + K L I+PPN+N S YYF ++ D
Sbjct: 777 WLKLYYPEEFMASAMNADIDNIKKIVVLINEC-KVMKLKIIPPNVNQSDYYF--KVDDD- 832
Query: 827 KHKKIRYGLGAIKGTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSG 885
K I YGLGAIKG GKS I IV RK F+ LFD ++ K I ++I LI SG
Sbjct: 833 --KNIIYGLGAIKGIGKSVILDIVNARKNRKRFSELFDLCVSVNSKRITHKVIEKLIMSG 890
Query: 886 AFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKND------DNNNLKEYLNYVKVP 939
DCF R +L+ S + +K+A +++ + L K D D+ N+ + Y
Sbjct: 891 GCDCFGLNRSILMHSCEYIIKSAN---QYLKSIILKKRDLFGLLLDDFNVIKKKYYSIKK 947
Query: 940 SWSKKQELIEEKKVLGFCLSEHIFCIY-ETEIRQFIPIYLSEL----KPTYSCTVSGIIT 994
+S KQ L EK LG L+ H + ++R I L +L T ++ G+I+
Sbjct: 948 LYSMKQILDWEKDSLGLYLTGHPVDEHVHLQMRYNNVIRLKDLFNNKITTEQISILGMIS 1007
Query: 995 ELKLKTTYRGK-ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLK 1053
LK K T K ++ ++++D+ +EVII + + + +++L++ ++IV+G++ + F K
Sbjct: 1008 FLKFKVTKTKKNMVFMILEDSFVQIEVIIFDNILRRYRHLLEKEVIIIVTGRIQKSMFSK 1067
Query: 1054 NIRINAEKI 1062
+ AEK+
Sbjct: 1068 KYIVLAEKL 1076
>sp|Q9A700|DPO3A_CAUCR DNA polymerase III subunit alpha OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=dnaE1 PE=3 SV=1
Length = 1143
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/1142 (37%), Positives = 642/1142 (56%), Gaps = 47/1142 (4%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HLR+ S YS+++G ++ + + + AA PA + D +NLFG +++ A + G++PI
Sbjct: 9 FVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQPI 68
Query: 65 IGCDVWITN------EIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIE 118
IGC + + E + P+ L+LL +N GYL L EL S AY+++ E +
Sbjct: 69 IGCAIPVVGIGGGPTERWARAPT-LMLLAQNERGYLNLSELSSIAYLDSAEL--PEPVVP 125
Query: 119 WLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178
W + ++ +GLI LSG G + G+ A ++F D FY+E+QR P
Sbjct: 126 WAKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQRHGLPR 185
Query: 179 MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
+N A + ++P+VAT+ + F K + AH+ CI++G + +R ++ T E
Sbjct: 186 QAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDER-RRVTPE 244
Query: 239 QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
FK EM KLF D+P A NT++IA+RC + P LP FPT N + L ++
Sbjct: 245 HWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDGRNEAEELEHQA 304
Query: 299 KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
+ GLK RL L + Y KRL FE+ I KM F GYFLIVSDFI+W K + I
Sbjct: 305 REGLKMRLEGL-----TLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKWGKAHGI 359
Query: 359 PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
PVGPGRGSGA SLVA+ L+ITD+DPL + LLFERFLNP R+SMPDFD+DFC E R+ VI
Sbjct: 360 PVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERREEVIS 419
Query: 419 YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
YV+++YG+D V+QI+TFG++ A+ +RDVGRV+ L D + K++P P +TL+ A
Sbjct: 420 YVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPVTLAQA 479
Query: 479 IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
I EP+L + K + V +++A Q+EG+ RN HA G++I L PLYK
Sbjct: 480 IDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLYKDPRS 539
Query: 539 TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
+Q++ +E GL+KFDFLGL TL++LD+ + +KK + L KLP +D T
Sbjct: 540 DLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKK---RGFEIDLGKLPFDDAKT 596
Query: 599 YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG- 657
Y LL TV VFQLESQGM++ L++ + EEI ALISLYRPGPMD I F K G
Sbjct: 597 YELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCKFGR 656
Query: 658 EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
+ + P + VL ETYG++VYQEQVMQIAQIL GYSLG+ADLLRRA+GKKK EM
Sbjct: 657 KPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEMDLQ 716
Query: 718 RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
+ F +GA + + + ++ IF + KFAGYGFNKSHA AYA +SY TA+LK + F
Sbjct: 717 KIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPVEFF 776
Query: 778 AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
AA++SL + +T+K+ + +DA + G+++ P++N S F + ++ ++ Y LGA
Sbjct: 777 AASMSLDLSNTDKLAVFHQDA-RRFGITVRAPDVNRSGADF------EVENGEVLYALGA 829
Query: 838 IKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
I+ G ++ +V R + G F ++FDF +RID + +N+R I +L +GAFD ++ R
Sbjct: 830 IRNVGLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQ 889
Query: 897 LVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
+VAS DV + +A+ + Q LF +D K +W++ L EE +
Sbjct: 890 IVASADVLIAHAQSCHADRQGGQGGLFGSDPGAGRP---RLSKTENWNQVDLLDEELSAV 946
Query: 955 GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-----VSGIITELKLKTTYRG-KILI 1008
GF L+ H +R+ + L+E + G++ + + + G K
Sbjct: 947 GFYLTGHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAF 1006
Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIV----SGKVLEDRFLKNIRINAEKIFD 1064
+ + D + EV+ + K +++L+ + + + + E RF + +AE I +
Sbjct: 1007 VSLSDPTGEYEVLYPPESLRKCRDVLEPGKAVAIKVRAKARDGEVRFFGD---DAEPI-E 1062
Query: 1065 INVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNY 1124
V ++ G + + + I LK+ L + + G I + E++ P Y
Sbjct: 1063 KAVENVVAGLRVHLSPSAA-EIDALKRRLEPAQAQKGGEVTFVAAIGGGREIELRLPGRY 1121
Query: 1125 KV 1126
+
Sbjct: 1122 TL 1123
>sp|B8GWS6|DPO3A_CAUCN DNA polymerase III subunit alpha OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=dnaE1 PE=1 SV=1
Length = 1143
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/1142 (37%), Positives = 642/1142 (56%), Gaps = 47/1142 (4%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HLR+ S YS+++G ++ + + + AA PA + D +NLFG +++ A + G++PI
Sbjct: 9 FVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQPI 68
Query: 65 IGCDVWITN------EIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIE 118
IGC + + E + P+ L+LL +N GYL L EL S AY+++ E +
Sbjct: 69 IGCAIPVVGIGGGPTERWARAPT-LMLLAQNERGYLNLSELSSIAYLDSAEL--PEPVVP 125
Query: 119 WLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPN 178
W + ++ +GLI LSG G + G+ A ++F D FY+E+QR P
Sbjct: 126 WAKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQRHGLPR 185
Query: 179 MNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKE 238
+N A + ++P+VAT+ + F K + AH+ CI++G + +R ++ T E
Sbjct: 186 QAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDER-RRVTPE 244
Query: 239 QNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKS 298
FK EM KLF D+P A NT++IA+RC + P LP FPT N + L ++
Sbjct: 245 HWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDGRNEAEELEHQA 304
Query: 299 KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSI 358
+ GLK RL L + Y KRL FE+ I KM F GYFLIVSDFI+W K + I
Sbjct: 305 REGLKMRLEGL-----TLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKWGKAHGI 359
Query: 359 PVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQ 418
PVGPGRGSGA SLVA+ L+ITD+DPL + LLFERFLNP R+SMPDFD+DFC E R+ VI
Sbjct: 360 PVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERREEVIS 419
Query: 419 YVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA 478
YV+++YG+D V+QI+TFG++ A+ +RDVGRV+ L D + K++P P +TL+ A
Sbjct: 420 YVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPVTLAQA 479
Query: 479 IKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGM 538
I EP+L + K + V +++A Q+EG+ RN HA G++I L PLYK
Sbjct: 480 IDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLYKDPRS 539
Query: 539 TGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDT 598
+Q++ +E GL+KFDFLGL TL++LD+ + +KK + L KLP +D T
Sbjct: 540 DLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKK---RGFEIDLGKLPFDDAKT 596
Query: 599 YNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG- 657
Y LL TV VFQLESQGM++ L++ + EEI ALISLYRPGPMD I F K G
Sbjct: 597 YELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCKFGR 656
Query: 658 EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEH 717
+ + P + VL ETYG++VYQEQVMQIAQIL GYSLG+ADLLRRA+GKKK EM
Sbjct: 657 KPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEMDLQ 716
Query: 718 RKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFM 777
+ F +GA + + + ++ IF + KFAGYGFNKSHA AYA +SY TA+LK + F
Sbjct: 717 KIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPVEFF 776
Query: 778 AANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGA 837
AA++SL + +T+K+ + +DA + G+++ P++N S F + ++ ++ Y LGA
Sbjct: 777 AASMSLDLSNTDKLAVFHQDA-RRFGITVRAPDVNRSGADF------EVENGEVLYALGA 829
Query: 838 IKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYM 896
I+ G ++ +V R + G F ++FDF +RID + +N+R I +L +GAFD ++ R
Sbjct: 830 IRNVGLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQ 889
Query: 897 LVASIDVALKNAEK--TKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVL 954
+VAS DV + +A+ + Q LF +D K +W++ L EE +
Sbjct: 890 IVASADVLIAHAQSCHADRQGGQGGLFGSDPGAGRP---RLSKTENWNQVDLLDEELSAV 946
Query: 955 GFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCT-----VSGIITELKLKTTYRG-KILI 1008
GF L+ H +R+ + L+E + G++ + + + G K
Sbjct: 947 GFYLTGHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAF 1006
Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIV----SGKVLEDRFLKNIRINAEKIFD 1064
+ + D + EV+ + K +++L+ + + + + E RF + +AE I +
Sbjct: 1007 VSLSDPTGEYEVLYPPESLRKCRDVLEPGKAVAIKVRAKARDGEVRFFGD---DAEPI-E 1062
Query: 1065 INVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNY 1124
V ++ G + + + I LK+ L + + G I + E++ P Y
Sbjct: 1063 KAVENVVAGLRVHLSPSAA-EIDALKRRLEPAQAQKGGEVTFVAAIGGGREIELRLPGRY 1121
Query: 1125 KV 1126
+
Sbjct: 1122 TL 1123
>sp|O51526|DPO3A_BORBU DNA polymerase III subunit alpha OS=Borrelia burgdorferi (strain ATCC
35210 / B31 / CIP 102532 / DSM 4680) GN=dnaE PE=3 SV=2
Length = 1147
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/1150 (38%), Positives = 677/1150 (58%), Gaps = 59/1150 (5%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
+FIHL +HS+YS++DG +I+D+I A +A+TD NLFG IKFYK A GIKP
Sbjct: 6 RFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKP 65
Query: 64 IIGCDVWITNEIE--------NKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEI 115
IIG + ++ + K L+LL KN GY L +L S +Y+E Y R I
Sbjct: 66 IIGIEAYMAKTSKFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEGFYY-RPRI 124
Query: 116 RIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFK 175
+ LEK Y +GLI S G I + R + A+N + K+F ++FY+E+QR
Sbjct: 125 DKDDLEK--YSEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQRHG 182
Query: 176 QPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKF 235
+ + ++ + + + +P+ A + ++ + + A ++ CI G S+ R+K
Sbjct: 183 IKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRLKME 242
Query: 236 TKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCN-LKLEFGKPKLPKFPTPKNIN-INDF 293
T E K+Q EM +LF D+P A++NT+ IA++C+ K+ F P LP + P N + ++
Sbjct: 243 TNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFNTLGEY 302
Query: 294 LISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWA 353
L + GLK R NL + K R +E+ II M F GYFLIV DFI++A
Sbjct: 303 LEHLTLEGLKFRYKNLTS----------KIKDRAFYELSVIIGMGFEGYFLIVWDFIKFA 352
Query: 354 KNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGR 413
+N IPVG GRGSGA S+VAY+L ITDIDPL YNLLFERFLNP RISMPDFDIDFC EGR
Sbjct: 353 HDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCFEGR 412
Query: 414 DRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLI 473
D +I+YV ++YG+D V+QI+TFGT+ K ++DV RVLD+ ++ + ++K IP P +
Sbjct: 413 DEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPDGPK--V 470
Query: 474 TLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLY 533
+L + ++ L E ++ ++L+ A +EG+ R+ HA G++I+ + L ++ PLY
Sbjct: 471 SLKEVL-DDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVPLY 529
Query: 534 KQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPL 593
K + +QY D +EE GL+K DFLGL TL+++ I+ +N +F + +P
Sbjct: 530 KDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVN---PDFKIKNIPD 586
Query: 594 NDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCR 653
ND T+N+L + + +VFQ ES+GM+ +LK+AKPD E++IAL +LYRPGPM I F
Sbjct: 587 NDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQFIA 646
Query: 654 RKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
K G + YP P K+VL TYG++VYQEQVM++A+I+GG+SLG+AD+LRRA+GKKK
Sbjct: 647 AKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKED 706
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
EM E + F GAI+ G K A+EIF ++ F+GYGFNKSHA AY+L++Y TAYLK +Y
Sbjct: 707 EMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKANY 766
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+FMAANL+ +++ +K+ ++++ K G+++L P+IN S + F + +S I
Sbjct: 767 PEYFMAANLTNEINNNDKLSYYIEES-KAIGINVLKPDINRS-FREFRVTDS-----GIS 819
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YGL IK G ++ I+ ER K G +++ DF +R+D K IN++ + S I SG FD +
Sbjct: 820 YGLNGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLD 879
Query: 892 EKRYMLVASID--VALKNAEKTKKFINQLSLFKN-DDNNNLKEYLNYVKVPSWSKKQELI 948
+ R L ++D + + + +K K + Q SLF + + +++ NY +S + L
Sbjct: 880 QNRKTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLG 939
Query: 949 EEKKVLGFCLSEHIFCIYETEIRQFIPI-YLSELKPTYSCTV--SGIITELKLKTTYR-- 1003
EK++LGF +S H Y+ I F + L++L V SGI+ +K+ T R
Sbjct: 940 FEKELLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNN 999
Query: 1004 GKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
K+ VI+D ++++++ + YE+ +N L E ++ V G++ +R I EK+
Sbjct: 1000 AKMAFGVIEDFKGAIDIVVFTESYERYRNFLLEGNVIGVVGRLTFNR--DKFSIVVEKV- 1056
Query: 1064 DINVARI-------LYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCI--NKSI 1114
+N+ R+ ++ K + N ++ LK+ + F+ +G V +Y K +
Sbjct: 1057 -VNIERLSEYKINNIHIKFLNNKLNDLQLLNSLKESISNFEDNSGFSNVYFYLRENGKDL 1115
Query: 1115 KYEMKFPLNY 1124
K +M LN+
Sbjct: 1116 KLKMNSILNF 1125
>sp|O83675|DPO3A_TREPA DNA polymerase III subunit alpha OS=Treponema pallidum (strain
Nichols) GN=dnaE PE=3 SV=1
Length = 1170
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/1094 (38%), Positives = 626/1094 (57%), Gaps = 49/1094 (4%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HL +HS YS++DG + ++ A + Q ALA+TD N+FG + F K +GIK I
Sbjct: 6 FVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAEGIKAI 65
Query: 65 IGCDVWITNEIE--------NKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIR 116
IGC++++ E ++ L++L KN GY L L SKAYIE + Y + +
Sbjct: 66 IGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGMYY-KPRVD 124
Query: 117 IEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFP-DNFYIEIQRFK 175
E L ++ +GLI LS G + + GR AE AR++ +F DN++IE+Q
Sbjct: 125 DELL--AQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQDHG 182
Query: 176 QPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKF 235
I +A + +P+V T+ + + ++ + +A ++ CI + S+ R+K
Sbjct: 183 LDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRLKFK 242
Query: 236 TKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLI 295
T E K+ +M +LF P + NT+ IA+RCN+++ P LP + P + + I
Sbjct: 243 TDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKEHYI 302
Query: 296 SKSKH-GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAK 354
H GL R Y K R +E++ I++M+F GYFLIV DFI WAK
Sbjct: 303 RHLVHRGLYDR----------YAVVSEEIKARADYELDVIVRMDFVGYFLIVWDFITWAK 352
Query: 355 NNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRD 414
+ IPVGPGRGSGASS+VAY+L ITDIDPL Y LLFERF+NP RISMPDFDIDFC E R
Sbjct: 353 EHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDIDFCFERRQ 412
Query: 415 RVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLIT 474
VI+YV+ RYG D V QI+TFGT+ K AIRDVGRVLD+ S I+KL+P P +T
Sbjct: 413 EVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPDDPK--LT 470
Query: 475 LSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK 534
A + E QLA+ +K E +L ++A+++E RN +HA G++I + L ++ PLYK
Sbjct: 471 FKKAYESE-QLAQ-MKQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDYVPLYK 528
Query: 535 QEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLN 594
I +Q+ D IE+ GL+K DFLGL TL+++ +T +++ K T FS++ +
Sbjct: 529 DSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSISDISDQ 588
Query: 595 DKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNF--C 652
D T+++L + + AVFQ ES+GM+ +LK AKP E++IAL +LYRPGPM I +
Sbjct: 589 DPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFIDQYIES 648
Query: 653 RRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTS 712
+R G+ YPDP +D+LSETYG++VYQEQVMQ+AQ + G+SLG+AD+LRRA+GKKK +
Sbjct: 649 KRDPGK-IKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMGKKKLA 707
Query: 713 EMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHY 772
M E +K F A K G K A IF + FAGYGFNKSHATAY++++Y TA+LK ++
Sbjct: 708 VMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAFLKANF 767
Query: 773 SSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIR 832
+ FMAANLS ++ K+ + + +A K GLSI P++N S+ Y F + E I
Sbjct: 768 PAEFMAANLSNEINSAEKLPLYMAEAEKM-GLSIQKPDVNASEPY-FSVCEG-----CIV 820
Query: 833 YGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFN 891
YGL IKG G+ + ER + G +T+ + R+ +N++ +I +G FD F
Sbjct: 821 YGLLGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFG 880
Query: 892 EKRYMLVASIDVALKNAEKTKKFIN--QLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIE 949
R L A +D A+K + K + Q SLF D EY + + WS+++ L
Sbjct: 881 VTRASLTAHLDDAMKYVARKKAVTSSRQASLFDETDLGECSEY-TFPVMEEWSQRERLRI 939
Query: 950 EKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYS---CTVSGIITELKLKTTYRGKI 1006
EK+++G+ +S H Y + I + + L ++ S + G++ + TT GK
Sbjct: 940 EKELMGYYISGHPLDEYRSVIGEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKN 999
Query: 1007 LII-VIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDR----FLKNIRINAEK 1061
+ +D SV++++ L+E+++ ++ + G V + FL + I+ E+
Sbjct: 1000 MAFGSFEDLHGSVDIVVFPVLWEEHRAQFLPETIMGLVGTVDFSKETPAFLVDSVIDLEQ 1059
Query: 1062 IFDINVARILYGKK 1075
+ V IL G +
Sbjct: 1060 LRFAQVKTILAGSE 1073
>sp|Q9XDH5|DPO3A_THEAQ DNA polymerase III subunit alpha OS=Thermus aquaticus GN=dnaE PE=1
SV=1
Length = 1220
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/1150 (36%), Positives = 634/1150 (55%), Gaps = 120/1150 (10%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVI----EAAANDYQPALAITDLSNLFGIIKFYKSAYNK 59
+F HL H+++S++DG ++ D++ E D PALA+TD NLFG ++FYK A
Sbjct: 6 KFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPED--PALAMTDHGNLFGAVEFYKKATAM 63
Query: 60 GIKPIIGCDVWITNEIE-NKKPSR--------LLLLVKNNNGYLQLCELLSKAYIENINY 110
G+KPIIG + ++ E ++K + L LL K+ GY L L S+AY+E Y
Sbjct: 64 GVKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGF-Y 122
Query: 111 GRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIE 170
+ I E L ++ GLIALSG +I + R D+AE IF D F+IE
Sbjct: 123 EKPRIDREIL--REHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIE 180
Query: 171 IQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTK 230
IQ P Q A L +VAT+ +++K + AHEV I L + +
Sbjct: 181 IQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPE 240
Query: 231 RIKKFTKEQNFKTQSEMIKLFYDIPSA------IQNTIEIAKRCNLKLEFGKP---KLPK 281
R + E KT EM + +P A NT+EIA+ C++ L G ++P+
Sbjct: 241 RWRFPCDEFYVKTPEEMRAM---LPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPR 297
Query: 282 FPTPKNININDFL---------------ISKS-------------KHGLKKRLLNLYKDP 313
FP P+ +L I+++ HG ++ L
Sbjct: 298 FPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARV 357
Query: 314 EIYKCEKLRYK----------------KRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNS 357
E E+LR + R +E+ I +M F GYFLIV D+I WA+ +
Sbjct: 358 EEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHG 417
Query: 358 IPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVI 417
+ VGPGRGS A SLVAY++ IT+IDPL + LLFERFLNP R+SMPD D DF RDRVI
Sbjct: 418 VSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVI 477
Query: 418 QYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSN 477
QYV++RYG+D V+QI TFG++A+K A++DV RV + + + ++KLIP + GK L
Sbjct: 478 QYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQE 537
Query: 478 AIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYK-QE 536
AI+ P+L ++ +E +RQ+IE+A ++EG+ R+ +HA GV+IA L + PL + QE
Sbjct: 538 AIQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQE 597
Query: 537 GMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDK 596
G ++QYD +E +GL+K DFLGL TL+ LD+ +K+ +K ++LPL+D
Sbjct: 598 GRP--VTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKE--SKGVELDYDRLPLDDP 653
Query: 597 DTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKH 656
T+ LL + T VFQLES GM ++ KP E+IIAL+SLYRPGPM+ I + RR H
Sbjct: 654 KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHH 713
Query: 657 GE----YFNYPDPRT--KDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKK 710
G+ Y +P + +L ETYGI VYQEQ+MQIA + GYSLG+ADLLRRA+GKK+
Sbjct: 714 GQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKR 773
Query: 711 TSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKT 770
EM +HR+ F GA + G+ + +AN +F+ +E FA YGFNKSHA AY+LLSY TAY+K
Sbjct: 774 VEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKA 833
Query: 771 HYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKK 830
HY FMAA LS+ D++K+ ++DA + G+ +LPP++N S + F + E +
Sbjct: 834 HYPVEFMAALLSVERHDSDKVAEYIRDA-RALGIPVLPPDVNRSGFDFKVVGE------E 886
Query: 831 IRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
I +GL A+K G+ AI+ ER + G F +L DF KR+ ++ +N+R + SL+ +GA D
Sbjct: 887 ILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDA 946
Query: 890 FNEKRYMLVASIDVALKNAEKTKKFINQ--LSLFKNDDNNNLKEYLNYVKVPSWSKKQEL 947
F + R L+AS++ L+ A +T++ + LF + L V+ + L
Sbjct: 947 FGD-RARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPPL------VEASPLDEITML 999
Query: 948 IEEKKVLGFCLSEHIFCIYE----------TEIRQFIPIYLSELKPTYSCTVSGIITELK 997
EK+ LG +S H Y E+ +F+ EL +SG++ E+
Sbjct: 1000 RYEKEALGIYVSGHPVLRYPGLREVASCTIEELSEFV----RELPGKPKVLLSGMVEEVV 1055
Query: 998 LKTTYRGKILI-IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIR 1056
K T G ++ + D + ++EV++ + YE LKE+ L+V +V + + +R
Sbjct: 1056 RKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG---EELR 1112
Query: 1057 INAEKIFDIN 1066
+ A+ ++ +
Sbjct: 1113 VLAQAVWTLE 1122
>sp|O34623|DPO3A_BACSU DNA polymerase III subunit alpha OS=Bacillus subtilis (strain 168)
GN=dnaE PE=3 SV=1
Length = 1115
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/1139 (35%), Positives = 650/1139 (57%), Gaps = 49/1139 (4%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+HL++HS YS+++ + +++ A +LA+TD ++G I+FYK+ +GI PI
Sbjct: 3 FVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINPI 62
Query: 65 IGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNK 124
IG + + + L+LL K+N GY L ++ S ++ + ++ +WL +
Sbjct: 63 IGLTASVFTDDSELEAYPLVLLAKSNTGYQNLLKISSVLQSKS----KGGLKPKWL--HS 116
Query: 125 YQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDN-FYIEIQRFKQPNMNFQI 183
Y++G+IA++ G I ++ G + A + + IF FY Q FK
Sbjct: 117 YREGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQPFK--GNQVLS 174
Query: 184 QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
+Q + ++ +P+ AT + +++K + A+ I GE L++ + + + K
Sbjct: 175 EQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAP--AEDLPDLDLKP 232
Query: 244 QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
EM ++ + P A+Q ++EIA++C + + G+ +LP FPTP + +D+L GL+
Sbjct: 233 LEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDGTSADDYLTDICMEGLR 292
Query: 304 KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
R + P+ RY +RLQ+E++ I +M FS YFLIV DF++ A I GPG
Sbjct: 293 SR----FGKPD------ERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAHEKGIVTGPG 342
Query: 364 RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
RGS A SLVAY L ITD+DP+ ++LLFERFLNP R+SMPD DIDF RD VIQYV+ +
Sbjct: 343 RGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRDEVIQYVQQK 402
Query: 424 YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
YG V+QI+TFGT+AAK A+RDVGRV + D ++KLIP +PG +TL A ++ P
Sbjct: 403 YGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPG--MTLDEARQQSP 460
Query: 484 QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI-I 542
QL +R++ ++Q+ +A+++EG+ R+ HA GV+++ L + PL QEG GI +
Sbjct: 461 QLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPL--QEGHEGIYL 518
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
+QY D +E++GL+K DFLGL L++++ I+K + L+ + +D T++LL
Sbjct: 519 TQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEK--EENIKIDLSSISYSDDKTFSLL 576
Query: 603 KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY-FN 661
K +T +FQLES GM+++LK KP E+I+A+ +LYRPGPM+ I F RKHG +
Sbjct: 577 SKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHGRAPVH 636
Query: 662 YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
YP + +L +TYG++VYQEQ+M IA + G+SLG+ADLLRRA+ KKK + R F
Sbjct: 637 YPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDRERSHF 696
Query: 722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
G +K S ANE+++ I KFA YGFN+SHA AY+++ AYLK HY +FM L
Sbjct: 697 VEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYFMCGLL 756
Query: 782 SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGT 841
+ + + +KI + +A K G+ ILPP++N S FP +G +RY L AIK
Sbjct: 757 TSVIGNEDKISQYLYEA-KGSGIRILPPSVNKSS---FPFTVENG---SVRYSLRAIKSV 809
Query: 842 GKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
G S ++ I RK F +LFDF R+ K +NR+++ +LI SGA D F + R L+ASI
Sbjct: 810 GVSAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASI 869
Query: 902 DVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH 961
DVAL++AE +Q+ LF D++ ++K YV+ L EK+ LG S H
Sbjct: 870 DVALEHAELFAADDDQMGLFL-DESFSIKP--KYVETEELPLVDLLAFEKETLGIYFSNH 926
Query: 962 IFCIYETEI--RQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGK-ILIIVIDDNSNSV 1018
+ ++ + + I ++ ++ +++++K T G+ + + + D + +
Sbjct: 927 PLSAFRKQLTAQGAVSILQAQRAVKRQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986
Query: 1019 EVIINNQLYEKNKNILKENELLIVSGK--VLEDRFLKNIRINAEKIFDINV--ARILYGK 1074
E ++ + + + +L+E LL +GK V +D+ ++ I AE + D++ A +Y K
Sbjct: 987 EAVVFPEQFRQLSPVLREGALLFTAGKCEVRQDK-IQFIMSRAELLEDMDAEKAPSVYIK 1045
Query: 1075 KFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLK 1133
S ++ ++ +K+ILL K + G+ ++ Y ++IK F +N Q + LK
Sbjct: 1046 IESSQHSQEI-LAKIKRILLEHKGETGV-YLYYERQKQTIKLPESFHINADHQVLYRLK 1102
>sp|Q92GB2|DPO3A_RICCN DNA polymerase III subunit alpha OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=dnaE PE=3 SV=1
Length = 1181
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/1135 (37%), Positives = 633/1135 (55%), Gaps = 75/1135 (6%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M P+FIHLR S YS ++ L I V+E A+++ PA+ + D NLFG ++F A KG
Sbjct: 1 MRPEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKG 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
++PI G + I +I+ +++LL+ K+ GY L +L S + +N I E L
Sbjct: 61 LQPIHGVILNIKYDID--IFAQILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDL 118
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
+YQ+GLI L G +G + + A FAR+ +I D FY EI R + P
Sbjct: 119 --IEYQEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMRHELPEEQ 176
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
F +I IA+ + +P+VAT+ + F +K+ AH+V CI+ G R K ++
Sbjct: 177 FIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDR-KTVSENCY 235
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
FK+ EMI+LF D+PSAIQNT+ + +RC P LP F T +NI+ D + +K
Sbjct: 236 FKSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFAT-ENISETDLIKKDAKE 294
Query: 301 GLKKRLLNLYKDPEIY----KCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
GL RL +K I + K Y RL +E++ I MNF+GYFLIVSDFI+W+K
Sbjct: 295 GLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKE 354
Query: 357 SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
I VGPGRGSGA S+VA+SL ITD+DP+ + LLFERFLNP RISMPDFDIDFC E R+ V
Sbjct: 355 GILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEV 414
Query: 417 IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
I YV+ +YG + V QI+TFG M AK I+DV RVL L Y F D +++L+PF ++L
Sbjct: 415 INYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLE 474
Query: 477 NAIKEEPQLAERIKN---------EEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLI 527
A++E P+LA K E ++ +I+ + +EG+ R+ HA G++IA + L+
Sbjct: 475 QAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAAGIVIAGTDLV 534
Query: 528 NFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS 587
+ P+YK +I Y E GLIKFDFLGL TL+++ +K+ +
Sbjct: 535 DIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLKE---QGIEVD 591
Query: 588 LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
N + +D TY +L K V VFQ ES GMK+ L+ KPD ++IAL +LYRPGPM+
Sbjct: 592 FNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMEN 651
Query: 648 IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
I + KH + +Y + +L ETYG+++YQEQV +IAQ+L GY+LG ADLLRRA+
Sbjct: 652 IPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAM 711
Query: 707 GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
GKK EM E + F GAI +S+ +A IF + KFAGYGFNK+HA +Y ++SY TA
Sbjct: 712 GKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYGVISYQTA 771
Query: 767 YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFF------- 819
YLK +Y + F+ A L+L +++ +KI + +++A K G+ I+ PNIN+S+ YF
Sbjct: 772 YLKANYPAAFLVACLNLELNNHDKINLFLQEA-KDNGIKIIAPNINISEGYFSVKFSDTV 830
Query: 820 ------PIIES-DGKHKKIR----------------YGLGAIKGTGKSTIEAIVTERKF- 855
P+I D +KI + LGAIKG + + + ERK
Sbjct: 831 IPHSVKPVIPRLDRGIQKISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVTDERKAR 890
Query: 856 GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASID--VALKNAEKTKK 913
G F ++ DF +R+ K IN +++ +LI SG FD ++ R L++SI ++ A ++
Sbjct: 891 GAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYSTAYHEEQ 950
Query: 914 FINQLSLFKNDDNNNLKEYLNYVKVPS-WSKKQEL-IEEKKVLGFCLSEHIFCIYETEIR 971
NQ SL K + + V S ++ K L E + +G +S H Y+
Sbjct: 951 ESNQFSLIK------VSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQEIFS 1004
Query: 972 QFIPIYLSELK-----PTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV-IINNQ 1025
+ + ++L T ++G+I + + + RG+ + +V+ D N E+ I + +
Sbjct: 1005 RLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIFSEE 1064
Query: 1026 LYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMF 1080
+ + ++L L++V+ +++D I++ A+ I A + K+F + F
Sbjct: 1065 VLKDYVHLLDVKSLVVVNCDIVKDE--GGIKLTAKSFSSIEDA--INNKQFELQF 1115
>sp|Q9PPI9|DPO3A_CAMJE DNA polymerase III subunit alpha OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=dnaE PE=3
SV=1
Length = 1200
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/1002 (40%), Positives = 591/1002 (58%), Gaps = 60/1002 (5%)
Query: 2 IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
+ QF HL LH+EYS++DG ++ ++ ++A+TD N+FG I FY++ +G+
Sbjct: 1 MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGL 60
Query: 62 KPIIGCDVWITNEIE-NKKPSR----LLLLVKNNNGYLQLCELLSKAYIENINYGRAEIR 116
KPIIG + ++ N E + K SR L L KN GY L L S++YI+ + Y I
Sbjct: 61 KPIIGIEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYY-YPRIN 119
Query: 117 IEWLEKNKYQDGLIALSGAHLGDIG--IAVQNGRN--------DIAENFARRWSKIFPDN 166
+ LE Y +GLI S G++ + + RN + A+ A + K+F D+
Sbjct: 120 KKLLED--YSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKDD 177
Query: 167 FYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEIL 226
FY EI R + I ++ +N+ I+AT+ + K AHEV CIA G+ L
Sbjct: 178 FYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKKL 237
Query: 227 SNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKF---- 282
++ R++ E K+ +M +LF DIP AI+NT EIA++CNL+L G P P F
Sbjct: 238 NDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFTR 297
Query: 283 PTPKNINI------------NDFLISKS--KHGLKKRLLNLYKDPEIYKCEKLRYKKRLQ 328
K+ NI ND ++ + K GL++RL I + + YK+RL+
Sbjct: 298 EYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERL------KFIDESKHEEYKQRLE 351
Query: 329 FEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNL 388
EI I M FSGY LIV DFI+ AK+ IPVGPGRGS A SLV+Y L ITD+DP+ Y+L
Sbjct: 352 VEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSL 411
Query: 389 LFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVG 448
LFERFLNP R+SMPD D+DFC + R VI YV D+YG D V+Q++TFG + AKG IRDV
Sbjct: 412 LFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVA 471
Query: 449 RVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGI 508
RV D+ D ++KL+P + ITL A ++EP++ E I + ++ E A+ +EG+
Sbjct: 472 RVCDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGLEVWEYARALEGL 529
Query: 509 IRNVGMHAGGVLIAPSKLINFCPLYKQE--GMTGIISQYDKDDIEEIGLIKFDFLGLTTL 566
RN GMHA GV+I+ L PL++Q +++QY KD +E++ LIKFDFLGL TL
Sbjct: 530 NRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTL 589
Query: 567 SILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAK 626
++++ I IKK K + + +ND Y ++ NT+ +FQ+ES GM+++ K
Sbjct: 590 TVINNAIKLIKKRYNK--DIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLK 647
Query: 627 PDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQ 683
P+ FE+IIA+++LYRPGPM+ ++ +F RKHG + YP + VL TYG++VYQEQ
Sbjct: 648 PERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQ 707
Query: 684 VMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIE 743
VMQI QI+GG+SLG AD++RRA+GKK +M + + F +GA K G + KA +++ I
Sbjct: 708 VMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIV 767
Query: 744 KFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCG 803
KFAGYGFNKSH+ AYAL+++ TAYLKT+Y S FMAA L+ ++ +KI + + D +K
Sbjct: 768 KFAGYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYI-DEMKKMN 826
Query: 804 LSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFD 863
+ +LPP+IN + F +E DGK I YGLGAIK G +E ++ R+ G F ++ D
Sbjct: 827 IKLLPPSINKA-IREFSALEQDGK-DAIIYGLGAIKSVGIPAVENLLEARQDGEFKDIND 884
Query: 864 FTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI----DVALKNAEKTKKFINQLS 919
F +ID INRR + SLI +GAFD F R L ++ + + K AE K + S
Sbjct: 885 FLGKIDPTKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAAS--S 942
Query: 920 LFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH 961
LF ++ + + K + ++L EK++LG +S H
Sbjct: 943 LFGEEELTSGVQVNFTPKNEEFEVMEKLGYEKEILGIYVSGH 984
>sp|Q1RKF9|DPO3A_RICBR DNA polymerase III subunit alpha OS=Rickettsia bellii (strain
RML369-C) GN=dnaE PE=3 SV=1
Length = 1172
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/1112 (37%), Positives = 618/1112 (55%), Gaps = 61/1112 (5%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M +FIHLR S YS + L ++E A++ A+ +TD NLFG ++F A KG
Sbjct: 1 MQTEFIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKG 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
++PI G V + + E + +LL+ K+ GY L +L S + N I E L
Sbjct: 61 LQPIHG--VILNIQYETGVFAEILLIAKDETGYKNLLKLSSITFTTNDRKICNHITFEDL 118
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
++ +Q+GLI L G IG + + + AE FAR +IF D FY EI R P
Sbjct: 119 KE--HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHDLPEEQ 176
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
+I IAS +N+P+VAT+ + F KK+ AH+V CI+ G R K ++
Sbjct: 177 LIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDR-KTVSENCY 235
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
FK+ EMI+LF D+PSAI+NT+ + +RC P LP F T K+I+ D + ++K
Sbjct: 236 FKSAKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFAT-KDISETDLIRKEAKD 294
Query: 301 GLKKRLLNLYKDPEI----YKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
GL RL +K I + K Y RL +E+ I MNF+GYFLIVSDFI+W+K
Sbjct: 295 GLLARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDFIKWSKKQ 354
Query: 357 SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
I VGPGRGSGA S+VA+SL ITD+DP+ + LLFERFLNP+RISMPDFDIDFC E R+ V
Sbjct: 355 GILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFCQERREEV 414
Query: 417 IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
I YV+ +YG + V QI+TFG M AK I+DV RVL L Y F D +++L+PF +TL
Sbjct: 415 INYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAINPVTLE 474
Query: 477 NAIKEEPQLAERIKNE---------EEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLI 527
AI+E P+LA K E ++ +++ + +EG+ R+ HA G++IA + L+
Sbjct: 475 QAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLV 534
Query: 528 NFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS 587
+ P+YK ++ Y E GLIKFDFLGL TL+++ +K+ N +
Sbjct: 535 DIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQNIE---ID 591
Query: 588 LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
N + +D+ TY +L K V VFQ ES GMK+ L+ KPD ++IAL +LYRPGPM+
Sbjct: 592 FNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPGPMEN 651
Query: 648 IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
I + KH + +Y K +L ETYG+++YQEQV +IAQ+L GY+LG ADLLRRA+
Sbjct: 652 IPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAM 711
Query: 707 GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
GKK +EM + + F GAI +S+ +A IF + KFAGYGFNK+HA AY ++SY TA
Sbjct: 712 GKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTA 771
Query: 767 YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYF-----FPI 821
YLK +Y + F+ A L+L +++ +KI + +++A K + I+ PNIN+S YF P
Sbjct: 772 YLKANYPAEFVVACLNLELNNHDKINLFLQEA-KDNNIKIIAPNINISGGYFSVKSVIPR 830
Query: 822 IESDGKH----------------KKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNLFDF 864
++ G H I + LGAIKG + + + ER G F ++ DF
Sbjct: 831 LDC-GIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSIVDF 889
Query: 865 TKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASID--VALKNAEKTKKFINQLSLFK 922
+R+ K IN +++ +LI +G FD ++ R L SI +A + ++ NQ SL K
Sbjct: 890 IERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFSLIK 949
Query: 923 NDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK 982
+ KE L V K E + +G +S H Y+ + + ++L
Sbjct: 950 VSSLS--KEIL--VSSDYADKNTLAFYEFEAMGLFISNHPLTEYKEIFNRLNILSSADLH 1005
Query: 983 -----PTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV-IINNQLYEKNKNILKE 1036
T ++G+I + + + RG+ + +V+ D N E+ I + ++ + ++L
Sbjct: 1006 NNLPDGTNRVMIAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIFSEEVLKDYVHLLDV 1065
Query: 1037 NELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
L++V+ +++D I+I A+ I A
Sbjct: 1066 KSLVVVNCDIIKDE--GGIKITAKSFSSIENA 1095
>sp|O05974|DPO3A_RICPR DNA polymerase III subunit alpha OS=Rickettsia prowazekii (strain
Madrid E) GN=dnaE PE=3 SV=2
Length = 1182
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/1145 (37%), Positives = 633/1145 (55%), Gaps = 86/1145 (7%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M P+FIHLR S YS ++ L I V+E A PAL ++D NLFG ++F A K
Sbjct: 1 MQPEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKK 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
++PI G + I +I +++LL+ K+ GY L +L S + +N I E L
Sbjct: 61 LQPIHGVILNIQYDI--NAFAQILLIAKDETGYKNLLKLSSLTFTKNDRKICEHIGFEDL 118
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
KYQ+G+IAL G +G + + + A FARR I D FY EI R P
Sbjct: 119 --IKYQEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDRFYFEIMRHDLPEEQ 176
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
F +I IAS +++PIVAT+ + F +K+ AH+V CI+EG R K ++
Sbjct: 177 FIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDR-KTVSENCY 235
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK-SK 299
FK+ +EM KLF D+P+AIQNTI + +RC P LP F T ++I+ +LI K +
Sbjct: 236 FKSPAEMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNFST-QDIS-ETYLIRKYAT 293
Query: 300 HGLKKRLLNLYKDPEIY--KCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKN 355
GL RL+ +K I EKL+ Y RL +E++ I MNF+GYFLIVSDFI+W+K
Sbjct: 294 EGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSDFIKWSKK 353
Query: 356 NSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDR 415
I VGPGRGSGA S+VA+SL ITD+DP+ + LLFERFLNP RISMPDFDIDFC E R+
Sbjct: 354 QGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREE 413
Query: 416 VIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL 475
VI YV+ +YG + V QI+TFG M AK I+DV RVL L Y D +++L+PF ++L
Sbjct: 414 VINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELVPFSAINPVSL 473
Query: 476 SNAIKEEPQLAERIK---------NEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKL 526
AI+E P+LA K + E ++ +++ + +EG+ R+ HA G++IA + L
Sbjct: 474 EQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDL 533
Query: 527 INFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF 586
++ P+YK +I Y E GLIKFDFLGL TL+++ +K+ K
Sbjct: 534 VDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKEQGIK---I 590
Query: 587 SLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD 646
+ + +DK TY +L K V VFQ ES GMK+ L+ KPD ++IAL +LYRPGPM+
Sbjct: 591 DFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPME 650
Query: 647 LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
I + KH + +Y + +L ETYG+++YQEQV +IAQ+L GY+LG ADLLRRA
Sbjct: 651 NIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRA 710
Query: 706 IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
+GKK EM E + F GAI +S +A IF+ + KFAGYGFNK+HA AY ++SY T
Sbjct: 711 MGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAYGVISYQT 770
Query: 766 AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFF-----P 820
AYLK +Y + F+ A L+L +++ +KI + +++A K G+ I+ PNIN+S+ YF
Sbjct: 771 AYLKANYPAEFLVACLNLELNNHDKINLFLQEA-KDNGIKIIAPNINISEGYFSVKSSNT 829
Query: 821 IIESDGKH---------KKIR-----------------YGLGAIKGTGKSTIEAIVTERK 854
+I K KKI + LGAIKG + + + ERK
Sbjct: 830 VITHSTKSVISRLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVTANFGKLVTDERK 889
Query: 855 F-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASID--VALKNAEKT 911
G F ++ DF +R+ K IN +++ +LI +G FD ++ R L SI +A +
Sbjct: 890 ARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSIPKLIAYSTSYHQ 949
Query: 912 KKFINQLSLFKNDDNNNLKEYLNYVKVPS-WSKKQEL-IEEKKVLGFCLSEHIFCIYETE 969
++ NQ SL K + + V S ++ K L E + +G LS H Y+
Sbjct: 950 EQESNQFSLIK------VSSLSPTILVSSDYADKNTLAFYEFEAMGLFLSNHPLTEYQGI 1003
Query: 970 IRQFIPIYLSEL-----KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV-IIN 1023
+ + +L T T++G+I + + + RG+ + +V+ D N E+ I +
Sbjct: 1004 FSRLNILNTRDLYNKLPNGTNRVTLAGVIQKKDSRMSARGRFVTLVLSDPENIFELTIFS 1063
Query: 1024 NQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRT 1083
++ + ++L L++V+ V++D I++ A+ I VM NR
Sbjct: 1064 EEVLKDYVHLLDVKSLVVVNCDVVKDE--GGIKLTAKSFLSIE----------DVMNNRQ 1111
Query: 1084 FNISI 1088
F + +
Sbjct: 1112 FELQL 1116
>sp|O67125|DPO3A_AQUAE DNA polymerase III subunit alpha OS=Aquifex aeolicus (strain VF5)
GN=dnaE PE=3 SV=1
Length = 1161
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/1122 (37%), Positives = 630/1122 (56%), Gaps = 105/1122 (9%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M F+HL LH+++S++DG ++I+++++ A A+ ++D NLFG KFYK+ +G
Sbjct: 1 MSKDFVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKAEG 60
Query: 61 IKPIIGCDVWIT-------------NEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIEN 107
IKPIIG + + T + I +K L+L+ K++ G L +L + AY E
Sbjct: 61 IKPIIGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAYKEG 120
Query: 108 INYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNF 167
Y + I E LEK Y +GLIAL+ G AE + +++ IF D+
Sbjct: 121 FYY-KPRIDYELLEK--YGEGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDDL 177
Query: 168 YIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILS 227
Y+E+Q P + I IA ++ ++AT +L + AH V L
Sbjct: 178 YLELQANNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMA------LQ 231
Query: 228 NTKRIKKFTKEQNFKTQSEMIKL-------------FYDIPSAIQNTIEIAKRCNLKLEF 274
K I + + NFK +E + F A+ NT+E+ ++ E
Sbjct: 232 MKKTIHELSS-GNFKCSNEDLHFAPPEYMWKKFEGKFEGWEKALLNTLEVMEKTADSFEI 290
Query: 275 GKPK---LPKFPTPKNININDFLISKSKHGLKKRL-LNLYKDPEIYKCEKLRYKKRLQFE 330
+ LPK+ P + + ++L + GL++R+ KD + Y +RL++E
Sbjct: 291 FENSTYLLPKYDVPPDKTLEEYLRELAYKGLRQRIERGQAKDTK-------EYWERLEYE 343
Query: 331 IETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLF 390
+E I KM F+GYFLIV DFI WAK N IPVGPGRGS SLVAY++ ITD+DP+ + LF
Sbjct: 344 LEVINKMGFAGYFLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLF 403
Query: 391 ERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRV 450
ERFLNP R+SMPD D+DFC + R++VI+YV+++YG D V+QI+T+ M AK +RDV R
Sbjct: 404 ERFLNPERVSMPDIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARA 463
Query: 451 LDLRYSFCDSISKLIPFK--PGKLITLSNAIK------------EEPQLAERIKN----- 491
+ L YS D ++KLIP G ++L K + + +K
Sbjct: 464 MGLPYSTADKLAKLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQIC 523
Query: 492 EE--EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPL-YKQEGMTGIISQYDKD 548
EE E++QL+E A ++EG+ R+ +HA GV+IAP L PL Y +EG + +QYD
Sbjct: 524 EESPEIKQLVETALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYDKEGE--VATQYDMV 581
Query: 549 DIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTV 608
+EE+GL+K DFLGL TL+ L IK+ + NF +LPL+D Y LL++ T
Sbjct: 582 QLEELGLLKMDFLGLKTLTELKLMKELIKERHGVDINFL--ELPLDDPKVYKLLQEGKTT 639
Query: 609 AVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPM--DLIKNFCRRKHG-EYFNYPDP 665
VFQLES+GMK +LK+ KPD F++I+A+++LYRPGP+ L+ + +RKHG E YP P
Sbjct: 640 GVFQLESRGMKELLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYPFP 699
Query: 666 RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
+ VL ETYG++VYQEQVM+++QIL G++ G+AD LR+AIGKKK M + + F GA
Sbjct: 700 ELEPVLKETYGVIVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGA 759
Query: 726 IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
++ G + K +++ +IEKFA Y FNKSH+ AY +SY+TAY+K HY + F A L+
Sbjct: 760 VERGYPEEKIRKLWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTEK 819
Query: 786 DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
+D NK L+KDA K G ILPP+IN S F IE + +IR+GL IKG G+ T
Sbjct: 820 ND-NKFLNLIKDA-KLFGFEILPPDINKSDVGF--TIEGEN---RIRFGLARIKGVGEET 872
Query: 846 IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
+ IV R K+ F L DF + + IN++++ +L+ +GAFD +KR L+A +
Sbjct: 873 AKIIVEARKKYKQFKGLADFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKV--- 929
Query: 905 LKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFC 964
N+EK Q SLF E L+ +K+ EK+VLGF +S H
Sbjct: 930 -ANSEKA-LMATQNSLFGAPKEEV--EELDPLKL-----------EKEVLGFYISGHPLD 974
Query: 965 IYETEIR-QFIPIY-LSELKPTYSCTVSGIITELKLKTTYRGKILIIV-IDDNSNSVEVI 1021
YE ++ ++ PI L E ++G+ITELK+K T G + + + D + +E +
Sbjct: 975 NYEKLLKNRYTPIEDLEEWDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECV 1034
Query: 1022 INNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIF 1063
+ +YE+ K +++E+ +++V G + ED +N++ +++F
Sbjct: 1035 VFPGVYEEAKELIEEDRVVVVKGFLDEDLETENVKFVVKEVF 1076
>sp|Q9Z7N8|DPO3A_CHLPN DNA polymerase III subunit alpha OS=Chlamydia pneumoniae GN=dnaE PE=3
SV=1
Length = 1240
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/1131 (36%), Positives = 628/1131 (55%), Gaps = 89/1131 (7%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
+I L HS+YS++D + I D + PALA+TD NL+G + FYK KGI+PI
Sbjct: 3 WIPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPI 62
Query: 65 IGCDVWIT--NEIENKKPSR------LLLLVKNNNGYLQLCELLSKAYIENINYGRAEIR 116
IGC+ +I + + KK R L+LL KN GY LC L S A+ E Y R
Sbjct: 63 IGCECYIAPGSRFDKKKEKRSRAAHHLILLCKNEQGYRNLCILTSLAFTEGFYYFP---R 119
Query: 117 IEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRW-SKIFPDNFYIEIQRFK 175
I+ +Y +GLI LSG + A + +W +F D+++ E+Q K
Sbjct: 120 IDKDLLRQYSEGLICLSGCLSSSVSDAALKSPEALL--LELQWFQDLFKDDYFTEVQLHK 177
Query: 176 QPNMNF------------------QIQ---QFINIASNINLPIVATHPIQFLKKTEFLAH 214
+ QI+ + + + +P VAT+ I ++ ++ AH
Sbjct: 178 MSEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAH 237
Query: 215 EVRTCIAEGEI---------LSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIA 265
E+ + GE + N KR ++E FK+ ++M +LF DIP I NT+E+A
Sbjct: 238 EILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVA 297
Query: 266 KRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKD---PEIYKCEKLR 322
KRC+ +F K P + P+++ + + ++ L + P+ Y E L
Sbjct: 298 KRCDFTFDFSKKHYPIY-VPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLA 356
Query: 323 Y--------------KKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGA 368
+ K+R+ E+ II Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 357 HIAKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGA 416
Query: 369 SSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDA 428
S++ + L IT+I+P+ ++L FERF+NP R+S PD DID C GR+RVI Y +R+GKD
Sbjct: 417 GSVLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 476
Query: 429 VSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAER 488
V+QI+TFGTM AK A++DVGR LD+ S + I+K I P TLS A++ +P L +
Sbjct: 477 VAQIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHI---PDLNTTLSKALETDPDLHQL 533
Query: 489 IKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKD 548
N+ E Q+I++A +EG IRN G+HA GV+I +L N P+ + T I +QY
Sbjct: 534 YINDAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMK 593
Query: 549 DIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTV 608
+E +G++K D LGL TL+ ++ + I+K ++ ++ LPL+D T++LL + T+
Sbjct: 594 PVESVGMLKVDLLGLKTLTSINIAMSAIEKKTGQS--LAMATLPLDDATTFSLLHQGKTM 651
Query: 609 AVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDPRT 667
+FQ+ES+GM+ + K +PD FEEIIA+ +LYRPGPMD+I +F RKHG E Y P
Sbjct: 652 GIFQMESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPLM 711
Query: 668 KDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIK 727
+ +L ETYGIMVYQEQVMQIA L YSLG+ D+LRRA+GKK +M + R+ F A
Sbjct: 712 ESILKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRACN 771
Query: 728 YGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDD 787
G+ A IF+++EKFA YGFNKSHA AY L++Y TAYLK +Y ++AA L+ DD
Sbjct: 772 NGIDPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDD 831
Query: 788 TNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIE 847
KI L+++A ++ G+ ILPP+IN+S +F E IR+ +GAIKG G+ IE
Sbjct: 832 IEKIGKLIREA-QSMGIPILPPHINVSSNHFVATDEG------IRFAMGAIKGIGRGLIE 884
Query: 848 AIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASID---- 902
+IV ER G + ++ DF +R D K ++++ I SLI++G FDCF+ R +L+AS++
Sbjct: 885 SIVEERDHHGPYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYE 944
Query: 903 -VALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH 961
+A E + +L D N + L +P+ SKK+ L +EK++LG L+EH
Sbjct: 945 AIAKDKKEAASGVMTFFTLGAMDRKNEVPICLPK-DIPTRSKKELLKKEKELLGIYLTEH 1003
Query: 962 IFCIYETEIRQFIPIYLSELK--PTYSCTVSGIITE---LKLKTTYRGKILIIVIDDNSN 1016
+ + + E + P S + I + K+ + + K ++ + D +
Sbjct: 1004 PMDTVRDHLSRLSVVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGID 1063
Query: 1017 SVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
S E+ I +YE+ + +L+E+ L + ++ D+ ++RI+ + D+++
Sbjct: 1064 SYELPIWPDMYEEQQELLEEDRL--IYAILVLDKRSDSLRISCRWMKDLSI 1112
>sp|Q68VX1|DPO3A_RICTY DNA polymerase III subunit alpha OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=dnaE PE=3 SV=1
Length = 1180
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/1123 (37%), Positives = 629/1123 (56%), Gaps = 74/1123 (6%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M +FIHLR S YS ++ L I V+E A PAL ++D NLFG ++F A K
Sbjct: 1 MQSEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFALYAVKKK 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
++PI G + I +I +++LL+ K+ GY L +L S + +N I E L
Sbjct: 61 LQPIHGVILNIQYDI--NVFAQILLIAKDETGYKNLLKLSSLTFTKNDRKICDHINFEDL 118
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
KYQ+GLIAL G +G + + + A FARR I D FY EI R P
Sbjct: 119 --IKYQEGLIALCCYTDGIVGKCLLARKQEHAIMFARRLQAILGDRFYFEIMRHDLPEEQ 176
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
F +I IAS +++PIVAT+ + F +K+ AH+V CI+EG R K ++
Sbjct: 177 FIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDR-KTVSENCY 235
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISK-SK 299
FK+ +EM KLF D+P+AIQNT+ + +RC P LP F T ++I+ +LI K +K
Sbjct: 236 FKSPAEMKKLFSDLPNAIQNTVNLRERCYFAAHPNPPMLPNFST-QDIS-ETYLIRKYAK 293
Query: 300 HGLKKRLLNLYKDPEIYK--CEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKN 355
GL RL+ +K I + EKL+ Y RL +E++ I MNF+GYFLIVSDFI+W+K
Sbjct: 294 EGLLARLVTKFKAENISREHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSDFIKWSKK 353
Query: 356 NSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDR 415
+ I VGPGRGSGA S+VA+SL ITD+DP+ + LLFERFLNP RISMPDFDIDFC E R+
Sbjct: 354 HGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREE 413
Query: 416 VIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITL 475
VI YV +YG + V QI+TFG M AK I+DV RVL L Y D +++L+PF ++L
Sbjct: 414 VINYVCSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKCADYLTELVPFSAVNPVSL 473
Query: 476 SNAIKEEPQLAERIK---------NEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKL 526
AI+E P+LA K + E ++ +++ + +EG+ R+ HA G++IA + L
Sbjct: 474 EQAIREVPELANAAKGKGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDL 533
Query: 527 INFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNF 586
++ P+YK +I Y E GLIKFDFLGL TL+++ +K+ +
Sbjct: 534 VDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKE---QGIEI 590
Query: 587 SLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD 646
+ + +D TY +L K V VFQ ES GMK+ L+ KPD ++IAL +LYRPGPM+
Sbjct: 591 DFDDMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPME 650
Query: 647 LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRA 705
I + KH + +Y K +L ETYG+++YQEQV +IAQ+L GY+LG ADLLRRA
Sbjct: 651 NIPTYIACKHKLQQPDYLHKLLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRA 710
Query: 706 IGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYT 765
+GKK EM E + F GAI +S+ +A IF + KFAGYGFNK+HA AY ++SY T
Sbjct: 711 MGKKIKKEMEEQEEIFVKGAIANNISQSQAKSIFATVAKFAGYGFNKAHAAAYGVISYQT 770
Query: 766 AYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFF------ 819
AYLK +Y + F+ A L+L +++ +KI + +++A K G+ I+ PNIN+S+ YF
Sbjct: 771 AYLKANYPAEFLVACLNLELNNHDKINLFLQEA-KDNGIKIIAPNINISEGYFSVKSSDT 829
Query: 820 -------PII-----ESDGKHKKIR-----------YGLGAIKGTGKSTIEAIVTERKF- 855
P+I E D K ++ + LGAIKG + + + ERK
Sbjct: 830 VITHNTKPLIPRLNNEIDIKDTAVKSLYYKDESTIIFALGAIKGVTPNFGKLVTDERKAR 889
Query: 856 GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASID--VALKNAEKTKK 913
G F ++ DF +R+ K IN +++ +LI +G FD ++ R L S+ +A + ++
Sbjct: 890 GAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSVPKLIAYSTSYHQEQ 949
Query: 914 FINQLSLFKNDDNNNLKEYLNYVKVPS-WSKKQEL-IEEKKVLGFCLSEHIFCIYETEIR 971
NQ SL K + + V S ++ K L E + +G +S H Y+
Sbjct: 950 ESNQFSLIK------VSSLSPTILVSSNYADKNTLAFYEFESMGLFISNHPLTEYQEIFS 1003
Query: 972 QFIPIYLSEL-----KPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEV-IINNQ 1025
+ + +L T T++G+I + + + RG+ + +V+ D N E+ I + +
Sbjct: 1004 RLNILNTRDLYNKLPNGTNQVTLAGVIQKKDSRMSARGRFVTLVLSDPENIFELTIFSEE 1063
Query: 1026 LYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
+ + ++L L++V+ +++D I++ A+ I A
Sbjct: 1064 VLKDYVHLLDVKSLVVVNCDIVKDE--GGIKLTAKSFLSIEDA 1104
>sp|Q4UK40|DPO3A_RICFE DNA polymerase III subunit alpha OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=dnaE PE=3 SV=1
Length = 1207
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/1142 (36%), Positives = 618/1142 (54%), Gaps = 119/1142 (10%)
Query: 1 MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKG 60
M P+FIHLR S YS ++ L I V+E A+++ PA+ + D NLFG ++F A KG
Sbjct: 1 MRPEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALYAVKKG 60
Query: 61 IKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWL 120
++PI G + I +I+ +++LL+ K+ GY L +L S + +N I E L
Sbjct: 61 LQPIHGVILNIKYDID--IFAQILLIAKDETGYKNLLKLSSLTFTKNDRKLCDHIDFEDL 118
Query: 121 EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMN 180
+YQ+GLIAL G +G + + A FAR+ I D FY EI R P
Sbjct: 119 --IEYQEGLIALCCYTDGIVGKCLLARSEEQAMLFARKLQDILGDRFYFEIMRHDLPEEQ 176
Query: 181 FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
F +I IA+ + +P+VAT+ + F +KT AH+V CI+ G R K ++
Sbjct: 177 FIEDSYIRIAAELAIPLVATNKVLFSEKTMHDAHDVLLCISAGVTKEYPDR-KTVSENCY 235
Query: 241 FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
F++ EMI+LF D+PSAIQNT+ + +RC P LP F T K+I+ D + +K
Sbjct: 236 FRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFAT-KDISETDLIRKDAKE 294
Query: 301 GLKKRLLNLYKDPEI--YKCEKLR--YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNN 356
GL RL +K I E+L+ Y RL +E++ I MNF+GYFLIVSDFI+W+K
Sbjct: 295 GLLARLATKFKSENIPLQNQEELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKE 354
Query: 357 SIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRV 416
I VGPGRGSGA S+VA+SL ITD+DP+ + LLFERFLNP RISMPDFDIDFC E R+ V
Sbjct: 355 GILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEV 414
Query: 417 IQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLS 476
I YV+ +YG + V QI+TFG M AK I+DV RVL L Y F D +++L+PF ++L
Sbjct: 415 INYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLE 474
Query: 477 NAIKEEPQLAERIK-----NEEEVRQLIELAKQ----VEGIIRNVGMHAGGVLIAPSKLI 527
A++E P+LA K N E +LI+L +EG+ R+ HA G++IA + L+
Sbjct: 475 QAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLV 534
Query: 528 NFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFS 587
+ P+YK ++ Y E GLIKFDFLGL TL+++ +K+ +
Sbjct: 535 DIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLKE---QGIEVD 591
Query: 588 LNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDL 647
N + +D TY +L K V VFQ ES GMK+ L+ KPD ++IAL +LYRPGPM+
Sbjct: 592 FNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMEN 651
Query: 648 IKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAI 706
I + KH + +Y K +L ETYG+++YQEQV +IAQIL GY+LG ADLLRRA+
Sbjct: 652 IPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAADLLRRAM 711
Query: 707 GKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTA 766
GKK EM E + F GAI +S+ +A IF + KFAGYGFNK+HA AY ++SY TA
Sbjct: 712 GKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTA 771
Query: 767 YLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYF-------- 818
YLK +Y + F+ A L+L +++ +KI + +++A K G+ I+ PNIN+S+ YF
Sbjct: 772 YLKANYPAEFLVACLNLELNNHDKINLFLQEA-KDSGIKIIAPNINISEGYFSVKSVIPQ 830
Query: 819 -----------------FP-----IIESDGKHKKIRYGLGAIKG-------TG----KST 845
+P ++ + R+ IKG TG KST
Sbjct: 831 AATCHPQGPLCHPRVGGYPEKVKTVLNHESMKMDSRFCGNDIKGSRNDIEDTGYDKEKST 890
Query: 846 I---------------EAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDC 889
I + + ERK G F ++ DF +R+ K IN +++ +LI SG FD
Sbjct: 891 IIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIKSGCFDE 950
Query: 890 FNEKRYMLVASID--VALKNAEKTKKFINQLSLFKND-------------DNNNLKEYLN 934
++ R L +SI +A + ++ NQ SL K DNN L Y
Sbjct: 951 LHDNRLQLFSSISKLLAYSASYHAEQESNQFSLIKVSSLSPNILIASDYADNNTLAFY-- 1008
Query: 935 YVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELK-----PTYSCTV 989
E + +G +S H Y+ + + ++L T +
Sbjct: 1009 ---------------EFESMGLFISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNRVNL 1053
Query: 990 SGIITELKLKTTYRGKILIIVIDDNSNSVEV-IINNQLYEKNKNILKENELLIVSGKVLE 1048
+G+I + + + RG+ + +V+ D N E+ I + ++ + ++L L++V+ +++
Sbjct: 1054 AGVIQKKDSRMSARGRFVTLVLSDPENIFELSIFSEEVLKDYVHLLDVKSLVVVNCDIVK 1113
Query: 1049 DR 1050
D
Sbjct: 1114 DE 1115
>sp|P56157|DPO3A_HELPY DNA polymerase III subunit alpha OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=dnaE PE=3 SV=1
Length = 1211
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/1129 (37%), Positives = 626/1129 (55%), Gaps = 88/1129 (7%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F HL LH+EYS++DG +I + + ++++TD N+FG I FY S +GIKPI
Sbjct: 7 FTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKKEGIKPI 66
Query: 65 IGCDVWITNEI-----ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW 119
IG + +I N+ E K+ L L KN GY L L S AY+E Y RI
Sbjct: 67 IGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFP---RINK 123
Query: 120 LEKNKYQDGLIALSGAHLGDIG--IAVQNGRN--------DIAENFARRWSKIFPDNFYI 169
++ G+IA S G++ + N RN D A+ A + +IF D+FY+
Sbjct: 124 KLLKEHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEYQEIFEDDFYL 183
Query: 170 EIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNT 229
EI R + F +Q I ++ L I+AT+ + + A EV C+A G+ L++
Sbjct: 184 EIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTLNDK 243
Query: 230 KRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEF-----GKPKLPKFPT 284
R+K E K+ EM KLF DIP A++NT EIA +C L+++ P P F
Sbjct: 244 GRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPSFKF 303
Query: 285 PK------NININD---FLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETII 335
K +N D + K++ GLK+RL+ + K+ + +YK+RL+ EIE I
Sbjct: 304 TKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKE------KHDQYKERLEKEIEVIT 357
Query: 336 KMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLN 395
M F GY LIV DFI++AK IPVGPGRGS A SLVA++L ITDIDPL Y+LLFERFLN
Sbjct: 358 NMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLN 417
Query: 396 PNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRY 455
P RISMPD D DFC R +I+Y+ ++YGK V+Q++TF M AKG IRDV RVLD+ Y
Sbjct: 418 PERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPY 477
Query: 456 SFCDSISKLIPFKPGKLITL----------SNAIKEEPQLAERIKNEEEVRQLIELAKQV 505
D +KLIP + G ITL A + EP++ E +++ E +Q+ E + +
Sbjct: 478 KEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNL 535
Query: 506 EGIIRNVGMHAGGVLIAPSK-LINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLT 564
E + RN G+HA +++ K L + PL+ E GI++QY +E + LIKFDFLGL
Sbjct: 536 ENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLK 595
Query: 565 TLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKE 624
TL+++D + IK + + +F L ++D Y ++ +TV +FQ+ES + + K
Sbjct: 596 TLTVIDDALKIIKTQHKISVDFL--SLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKR 653
Query: 625 AKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQ 681
+P FE+IIA+I+L RPGPM+ ++ +F RKHG E Y + +L TYG +VYQ
Sbjct: 654 LRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQ 713
Query: 682 EQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNE 741
EQVMQI Q +GG+SLG+ADL+RRA+GKK M +++ F GA G KA +++
Sbjct: 714 EQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDL 773
Query: 742 IEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVK--DAI 799
I KFAGYGFNKSH+ AYA++++ TAYLKT+Y FMAA L+ ++NKI+ + + D +
Sbjct: 774 IVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLT---SESNKIESVARYIDEV 830
Query: 800 KTCGLSILPPNINLSKYYFFPIIESDGK----HKKIRYGLGAIKGTGKSTIEAIVTERKF 855
+ + ++PP+IN S F + E + KKI +GLGAIKG G I+ I+ ER
Sbjct: 831 RALEIEVMPPHIN-SSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAK 889
Query: 856 GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFI 915
G + +L DF R+D + ++ + L+ SG+ D R ++A++D+ + +A + K
Sbjct: 890 GDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDL-ICDAGRAKDKA 948
Query: 916 NQL-----SLFKNDDNNNLKE-YLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETE 969
N++ SLF + ++ L+ + + K L E + LG +S + ++ E
Sbjct: 949 NEMMQGGNSLFGAMEGGTKEQVVLDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEE 1008
Query: 970 IRQF----IPIYLSELKPTYSCTVSGIITELKLKTTYR-GKILIIV-IDDNSNSVEVIIN 1023
I+ F I + EL+ + G I E+K K R GK I I D E++
Sbjct: 1009 IKGFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGIADILDRYGKFELM-- 1066
Query: 1024 NQLYEKNKNILKE---NELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
L+EK N L+E N+ L+ K+ E + +R+ +I D+ AR
Sbjct: 1067 --LFEKQLNALEELDINKPLVFKCKIEEQEEV--VRLRLFEILDLESAR 1111
>sp|Q9ZJF9|DPO3A_HELPJ DNA polymerase III subunit alpha OS=Helicobacter pylori (strain J99)
GN=dnaE PE=3 SV=1
Length = 1211
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/1130 (37%), Positives = 623/1130 (55%), Gaps = 90/1130 (7%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F HL LH+EYS++DG +I + + ++++TD N+FG I FY S +GIKPI
Sbjct: 7 FTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKKEGIKPI 66
Query: 65 IGCDVWITNEI-----ENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW 119
IG + +I N+ E K+ L L KN GY L L S AY+E Y RI
Sbjct: 67 IGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFP---RINK 123
Query: 120 LEKNKYQDGLIALSGAHLGDIG--IAVQNGRN--------DIAENFARRWSKIFPDNFYI 169
++ G+IA S G++ + N RN D A+ A + +IF D+FY+
Sbjct: 124 KLLREHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEYQEIFEDDFYL 183
Query: 170 EIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNT 229
EI R + F +Q I ++ L I+AT+ + + A EV C+A G+ L++
Sbjct: 184 EIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTLNDK 243
Query: 230 KRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEF-----GKPKLPKFPT 284
R+K E K+ EM KLF DIP A++NT EIA +C L+++ P P F
Sbjct: 244 GRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPSFKF 303
Query: 285 PKNININD---------FLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETII 335
K N+ + K++ GL++RL+ + PE K E +YK+RL+ EIE I
Sbjct: 304 TKAYAQNEGLSFEDDASYFAHKAREGLRERLILV---PE-EKHE--QYKERLEKEIEVIT 357
Query: 336 KMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLN 395
M F GY LIV DFI++AK IPVGPGRGS A SLVA++L ITDIDPL Y+LLFERFLN
Sbjct: 358 NMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLN 417
Query: 396 PNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRY 455
P R+SMPD D DFC R +I+Y+ ++YGK V+Q++TF M AKG IRDV RVLD+ Y
Sbjct: 418 PERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPY 477
Query: 456 SFCDSISKLIPFKPGKLITL----------SNAIKEEPQLAERIKNEEEVRQLIELAKQV 505
D +KLIP + G ITL A + EP++ E +++ E +Q+ E + +
Sbjct: 478 KEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWEYSLNL 535
Query: 506 EGIIRNVGMHAGGVLIAPSK-LINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLT 564
E + RN G+HA +++ K L + PL+ E GI++QY +E + LIKFDFLGL
Sbjct: 536 ENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLK 595
Query: 565 TLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKE 624
TL+++D + IK + +F L ++D Y ++ +TV +FQ+ES + + K
Sbjct: 596 TLTVIDDALKIIKTQHNIDVDFL--SLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKR 653
Query: 625 AKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQ 681
+P FE+IIA+I+L RPGPM+ ++ +F RKHG E Y + +L TYG +VYQ
Sbjct: 654 LRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQ 713
Query: 682 EQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNE 741
EQVMQI Q +GG+SLG+ADL+RRA+GKK M +++ F GA G KA +++
Sbjct: 714 EQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDL 773
Query: 742 IEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVK--DAI 799
I KFAGYGFNKSH+ AYA++++ TAYLKT+Y FMAA L+ ++NKI+ + + D +
Sbjct: 774 IVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLT---SESNKIESVARYIDEV 830
Query: 800 KTCGLSILPPNINLSKYYFFPIIESDGK----HKKIRYGLGAIKGTGKSTIEAIVTERKF 855
+ + ++PP+IN S F + E + KKI +GLGA+KG G I+ I+ ER
Sbjct: 831 RALEIEVMPPHIN-SSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAK 889
Query: 856 GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFI 915
G + +L DF R+D + ++ + L+ SG+ D R ++A++D+ + +A + K
Sbjct: 890 GDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDL-ICDAGRAKDKA 948
Query: 916 NQL-----SLFKNDDNNNLKE--YLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYET 968
N++ SLF + +KE L+ V + K L E + LG +S + ++
Sbjct: 949 NEMMQGGNSLFGAME-GGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKE 1007
Query: 969 EIRQF----IPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVID--DNSNSVEVII 1022
EI+ F I + EL+ + G I E+K K R D D E++
Sbjct: 1008 EIKGFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELM- 1066
Query: 1023 NNQLYEKNKNILKE---NELLIVSGKVLEDRFLKNIRINAEKIFDINVAR 1069
L+EK N L+E N+ L+ K+ E + +R+ +I D+ AR
Sbjct: 1067 ---LFEKQLNALEELDINKPLVFKCKIEEQEEVARLRLF--EILDLESAR 1111
>sp|Q9PJJ7|DPO3A_CHLMU DNA polymerase III subunit alpha OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=dnaE PE=3 SV=1
Length = 1237
Score = 633 bits (1632), Expect = e-180, Method: Compositional matrix adjust.
Identities = 402/1137 (35%), Positives = 627/1137 (55%), Gaps = 103/1137 (9%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
+I L HS+YSI+D I + A + PALA+TD NLFG + FYK+ IKPI
Sbjct: 3 WIPLHCHSQYSILDATCSIKKFVAKAVEYHIPALALTDHGNLFGAVDFYKTCKQNAIKPI 62
Query: 65 IGCDVWIT--------NEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIR 116
IGC++++ E +++ + L+LL K+ GY LC L S AY E Y R
Sbjct: 63 IGCELYVAPSSRFDKKKERKSQVANHLILLCKDEEGYRNLCLLSSLAYTEGFYYFP---R 119
Query: 117 IEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQR--- 173
I+ ++ GLI LS G I A + ++ + +F ++F+ E+Q
Sbjct: 120 IDRELLKQHSKGLICLSACLSGSIAQAALESEEALEKDLLW-YQDLFQEDFFSEVQLHKS 178
Query: 174 -------FKQPNMNFQIQQFI-----------NIASNINLPIVATHPIQFLKKTEFLAHE 215
F++ + QFI ++ + + VAT+ I +L ++LAHE
Sbjct: 179 SEEKIALFEEEWLRQNYYQFIEKQLKVKDAVLTVSKRLGISSVATNDIHYLDPDDWLAHE 238
Query: 216 VRTCIAEGE---------ILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAK 266
+ + E + N KR ++E FK+ EM +LF D P I NT+ +A
Sbjct: 239 ILLNVQSREPIRTAKQNTYVPNPKRKTYPSREFYFKSPQEMAELFADHPETISNTLIVAD 298
Query: 267 RCNLKLEFGKPKLPKFPTPKNIN-------------INDFLISKSKHGLKKR----LLN- 308
RCNL+L+F P + P+++ + FL + GLK + LL
Sbjct: 299 RCNLELDFVTKHYPIY-VPEDLQKKGSYSEEERYNASSAFLEQLCEQGLKTKYTPELLGH 357
Query: 309 -LYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSG 367
K PE K K+RL E II Y LIV D I WAK++ IPVGPGRGSG
Sbjct: 358 IAQKFPE--KDPLTVVKERLSLESTIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415
Query: 368 ASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKD 427
A S++ + L IT+I+P+ ++L FERF+NP R+S PD DID C GR++VI Y +R+GK+
Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMIGREKVINYAIERHGKE 475
Query: 428 AVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAE 487
V+QI+TFGTM AK AI+DVGR LD S + I+K IP T+++A++ +P L +
Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLSKVNLIAKKIPDLNA---TIASALESDPDLRQ 532
Query: 488 RIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDK 547
++ E ++I++AK++EG IRN G+HA GV+I L N P+ + + I +QY
Sbjct: 533 LYIDDAEAAEIIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSM 592
Query: 548 DDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDKDTYNLLKKA 605
+E +G++K DFLGL TL+ +I+ K K T L LPLND++T++LL +
Sbjct: 593 KPVESVGMLKVDFLGLKTLT----SIHVATKAIYKKTGILLQAATLPLNDRNTFSLLHQG 648
Query: 606 NTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPD 664
T+ +FQ+ES+GM+ + K +PD FEEIIA+ +LYRPGPMD+I +F RKHG E Y
Sbjct: 649 KTMGIFQMESRGMQELAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDH 708
Query: 665 PRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNG 724
P + +L ET+GIMVYQEQVMQIA L YSLG+ D+LRRA+GKK +M++ R+ F +
Sbjct: 709 PLMEPILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSR 768
Query: 725 AIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLS 784
A G+ A IF+++EKFA YGFNKSHA AY L++Y TAYLK +Y ++AA L+
Sbjct: 769 ASANGIDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCD 828
Query: 785 MDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKS 844
DD K+ L+++A + + +LPP+IN S F + + IR+ LGA+KG G S
Sbjct: 829 YDDIEKVGKLIQEA-HSMNIPVLPPDINESGQDF------EATQEGIRFSLGAVKGVGVS 881
Query: 845 TIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDV 903
+++IV ER K G + +L DF +R D K + ++ + SL+++G+F+CF + + +A ++
Sbjct: 882 IVDSIVEEREKNGPYRSLQDFVQRSDFKKVTKKQLESLVDAGSFNCFEPNKDLAIAILND 941
Query: 904 ALK--NAEKTKKFINQLSLFKNDD--NNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
+ EK + L+ F + + +K ++ + S K+ L EK++LG L+
Sbjct: 942 LYDTFSREKKEAATGVLTFFSLNSMTKDPVKVTISPENIVRRSDKELLKREKELLGVYLT 1001
Query: 960 EHIFCIYETEIRQFIPIYLSELK-------PTYSCTVSGIITE---LKLKTTYRGKILII 1009
H ++ +P +LS ++ P S + + + K+ + K ++
Sbjct: 1002 AHPM----DAVKHLLP-FLSVVQSKDFEGLPHGSVVRTVFLIDKVTTKISSVEHKKFALL 1056
Query: 1010 VIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDIN 1066
+ D +S E+ I + +Y + +++L+E+ L+ + DR ++R++ + D++
Sbjct: 1057 QVSDEEDSYELPIWSDMYAEYQDLLEEDRLIYAILTI--DRRSDSLRLSCRWMRDLS 1111
>sp|O84549|DPO3A_CHLTR DNA polymerase III subunit alpha OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=dnaE PE=3 SV=1
Length = 1237
Score = 631 bits (1628), Expect = e-180, Method: Compositional matrix adjust.
Identities = 397/1132 (35%), Positives = 624/1132 (55%), Gaps = 91/1132 (8%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQ-PALAITDLSNLFGIIKFYKSAYNKGIKP 63
+I L HS+YSI+D I + A A +YQ PALA+TD NLFG ++FYK+ IKP
Sbjct: 3 WIPLHCHSQYSILDATCSIKKFV-AKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61
Query: 64 IIGCDVWIT--------NEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEI 115
IIGC++++ E +++ + L+LL K+ GY LC L S AY E Y
Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVANHLILLCKDEEGYRNLCLLSSLAYTEGFYYVP--- 118
Query: 116 RIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQR-- 173
RI+ +++ GLI LS G + A D+ ++ + +F ++F+ E+Q
Sbjct: 119 RIDRDLLSQHSKGLICLSACLSGSVAQAALESEEDLEKDLLW-YQDLFQEDFFSEVQLHK 177
Query: 174 --------FKQPNMNFQIQQFIN-----------IASNINLPIVATHPIQFLKKTEFLAH 214
F++ + QFI + + +P VAT+ I +L ++LAH
Sbjct: 178 SSEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAH 237
Query: 215 EVRTCIAEGE---------ILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIA 265
E+ + E + N KR ++E FK+ E+ +LF P I NT +A
Sbjct: 238 EILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVA 297
Query: 266 KRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEI---YKCEKLR 322
+RC+L+L+F P + P+ + + ++ L + + Y E L
Sbjct: 298 ERCHLELDFETKHYPIY-VPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLG 356
Query: 323 Y--------------KKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGA 368
+ K+RL+ E II Y LIV D I WAK++ IPVGPGRGSGA
Sbjct: 357 HIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416
Query: 369 SSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDA 428
S++ + L IT+I+P+ ++L FERF+NP RIS PD DID C GR+RVI Y +R+GKD
Sbjct: 417 GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476
Query: 429 VSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAER 488
V+QI+TFGTM AK AI+DVGR LD + + I+K IP T+++A++ +P+L +
Sbjct: 477 VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNA---TITSALEADPELRQL 533
Query: 489 IKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKD 548
++ E ++I++AK++EG IRN G+HA GV+I L N P+ + + I +QY
Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593
Query: 549 DIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNK--LPLNDKDTYNLLKKAN 606
+E +G++K DFLGL TL+ I+ + K T L +PL+D++T++LL +
Sbjct: 594 PVESVGMLKVDFLGLKTLT----GIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGK 649
Query: 607 TVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPDP 665
T+ +FQ+ES+GM+++ K +PD FEEIIA+ +LYRPGPMD+I +F RKHG E Y P
Sbjct: 650 TMGIFQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHP 709
Query: 666 RTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGA 725
+ +L ET+GIMVYQEQVMQIA L YSLG+ D+LRRA+GKK +M++ R+ F + A
Sbjct: 710 LMEPILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRA 769
Query: 726 IKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSM 785
G+ A IF+++EKFA YGFNKSHA AY L++Y TAYLK +Y ++AA L+
Sbjct: 770 AANGIDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDY 829
Query: 786 DDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKST 845
DD K+ L+++A + + +LPP+IN S F + K IR+ LGA+KG G S
Sbjct: 830 DDIEKVGKLIQEA-HSMNILVLPPDINESGQDF------EATQKGIRFSLGAVKGVGMSI 882
Query: 846 IEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVA 904
+++IV ER K G + +L DF +R D K + ++ + +L+++G FDCF + + +A ++
Sbjct: 883 VDSIVEEREKNGPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDL 942
Query: 905 LK--NAEKTKKFINQLSLFKNDD--NNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
+ EK + L+ F D + +K ++ V S K+ L EK++LG L+
Sbjct: 943 YDTFSREKKEAATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTA 1002
Query: 961 HIFCIYETEIR--QFIPIYLSELKPTYSCTVSGIITE---LKLKTTYRGKILIIVIDDNS 1015
H E + +P E P + + + + K+ + + K ++ + D
Sbjct: 1003 HPMDAVEHMLPFLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEV 1062
Query: 1016 NSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINV 1067
+S E+ I +Y + +++L+E+ L+ + DR ++R++ + D++
Sbjct: 1063 DSYELPIWADMYAEYRDLLEEDRLIYAILAI--DRRSDSLRLSCRWMRDLST 1112
>sp|Q9K838|DPO3A_BACHD DNA polymerase III subunit alpha OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=dnaE PE=3 SV=1
Length = 1116
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 378/1047 (36%), Positives = 600/1047 (57%), Gaps = 47/1047 (4%)
Query: 6 IHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPII 65
+H+ +HSEY+++ + RI ++E A ALA+TD ++G + FYK+ G+KPII
Sbjct: 4 VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63
Query: 66 GCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLS--KAYIENINYGRAEIRIEWLEKN 123
G + T + S LLL ++N GY L +L + + E Y + W E
Sbjct: 64 GMET--TVRFAEDRESDLLLYARSNKGYEHLLKLSTIIQCREEKEKY------VTWEELL 115
Query: 124 KYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRW-SKIFPDNFYIEIQRFKQPNMNFQ 182
Y+D L+ + G + +++ + E F + + ++ Y+EIQ + +
Sbjct: 116 AYKDDLLYVIPYSGGFVRACLEDEALERGERFIQFLKDHLGGESVYLEIQGTDRS----K 171
Query: 183 IQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
++ +A+ + +P+V + IQ L++ + A +V I EG +L RI++ ++ F
Sbjct: 172 VEPINQLAAKLAIPLVCSQHIQVLEREDLDAWKVIQAIREG-VLVEELRIEQ-EEDVCFF 229
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
T +EM + F P A+QNT ++A RC+++L GKP+LPKF TP + D+L + G
Sbjct: 230 TLTEMEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPNEQSAEDYLRKLCEQGA 289
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
K+R E + EK +RL E+ I +M FS YFLIV DF+++A+ SI GP
Sbjct: 290 KERY------GEEWTKEK---AQRLGEELAVIERMGFSDYFLIVWDFMRFAREASIVTGP 340
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGS A SLVAY L ITD+DPL Y+LLFERFLNP RIS+PD D+DF R+ VI YVK
Sbjct: 341 GRGSVAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFPDHRREEVIVYVKK 400
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
+YG + V+QI+TFGT+AA+ ++RDVG+ L + + + ISK I +PG +TL A E
Sbjct: 401 KYGANRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRPG--MTLVKAYNEN 458
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
+L + + +E +++++LA++VEG+ R+ HA GV+I+ L L +G +
Sbjct: 459 ERLRQLVHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIALQHGQGEVP-L 517
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
+Q + +E++GLIK DFLGL L++L+ + +++ + N + +LPLND T+ LL
Sbjct: 518 TQGTMETVEDVGLIKMDFLGLRNLTLLEMVVKRVRETYGHSLN--VKQLPLNDAKTFALL 575
Query: 603 KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
K T VFQLES GM+ +L+E KP+ F +I+A+ +LYRPGPM+ I ++ + K G +
Sbjct: 576 AKGETTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPMEFIPDYIQGKEGTKEIT 635
Query: 662 YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
Y P + +LS TYG++VYQEQ+MQIA + G+SLG+ADLLRRAI KKK + + + F
Sbjct: 636 YLHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADLLRRAISKKKGEALRQQEEAF 695
Query: 722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
GA++ G + A +I+ I +FA YGFNKSHA AY++L+Y AYLK HY S F AA
Sbjct: 696 VTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSMLAYQLAYLKAHYPSSFYAALA 755
Query: 782 SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGT 841
S + K++ L+++ +K G+ +LPP+++ S +F E +G +R+ L ++
Sbjct: 756 STIWNQPEKLERLLQE-MKQQGIRVLPPSLSKSDIHFSE--EEEG----VRFPLLPLRYV 808
Query: 842 GKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
I ++ R+ +LFD R+D + + R++ SLI +GA D E R L+A+I
Sbjct: 809 SVRAIRELIKARREAPVRSLFDLCSRVDGRIVTSRVMESLIKAGALDELGE-RATLLANI 867
Query: 902 DVALKNAEKTKKFI-NQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSE 960
+ A + AE+ K+F N LF+ E Y+KV + ++L EK+ +GF LS
Sbjct: 868 EEAFQFAEQVKEFQENTGGLFQLS-----VEEPEYIKVEPLTDLEKLAYEKEAVGFYLSG 922
Query: 961 HIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKIL-IIVIDDNSNSVE 1019
H Y +RQ+ + E ++G+I ++ T RG+++ + + D + E
Sbjct: 923 HPLLAYTESLRQYDRLTYLEGTERRFVKLAGMIHRIRRIRTKRGEVMGFLTMSDETGEWE 982
Query: 1020 VIINNQLYEKNKNILKENELLIVSGKV 1046
++ ++ + LKE EL V GK+
Sbjct: 983 AVVFPAVWAMYEWGLKEGELYFVEGKM 1009
>sp|P63977|DPO3A_MYCTU DNA polymerase III subunit alpha OS=Mycobacterium tuberculosis
GN=dnaE1 PE=3 SV=1
Length = 1184
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 368/1149 (32%), Positives = 600/1149 (52%), Gaps = 79/1149 (6%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
F+HL H+EYS++DG +I ++ PA+ +TD N+FG +FY SA GIKP
Sbjct: 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68
Query: 64 IIGCDVWI-------TNEIENKKPSR-------------LLLLVKNNNGYLQLCELLSKA 103
IIG + +I T I PS+ L ++ +N G L +L S A
Sbjct: 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128
Query: 104 YIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF 163
E + + E + + + +G+I +G G++ ++ G++ A A +W +I
Sbjct: 129 SFEGQLSKWSRMDAELIAE--HAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIV 186
Query: 164 -PDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAE 222
PDN+++E+ + I +N+P +AT+ ++ + HE C+
Sbjct: 187 GPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQT 246
Query: 223 GEILSNTKRIKKFTKEQNFKTQSEMIKLFYD-IPSAIQNTIEIAKRCNLKLEFGKPK--L 279
G+ LS+ R K K+ +EM +++ D +P A +T+ IA+R + P+ +
Sbjct: 247 GKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRM 306
Query: 280 PKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNF 339
P FP P + +L + GL++R D Y++R +EI+ I F
Sbjct: 307 PVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPD---------GYRERAAYEIDVICSKGF 357
Query: 340 SGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRI 399
YFLIV+D I +A++ I VGPGRGS A SLVAY+L ITDIDP+ + LLFERFLNP R
Sbjct: 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417
Query: 400 SMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVL--DLRYSF 457
SMPD DIDF R +++Y D++G D V+Q++TFGT+ K A++D R+ ++
Sbjct: 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477
Query: 458 CDSISKLIPFK-PGKLITLSNAI-------KEEPQLAERIKNEEEVRQLIELAKQVEGII 509
D I+K +P K I LS KE ++ I+ + +VR + + A+ +EG+I
Sbjct: 478 ADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537
Query: 510 RNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSIL 569
RN G+HA V+++ L PL+K+ II+ +D E IGL+K DFLGL L+I+
Sbjct: 538 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597
Query: 570 DKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDY 629
I ++ + + L +PL+DK TY LL + +T+ VFQL+ M+++L+ +P
Sbjct: 598 GDAIDNVRA--NRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTG 655
Query: 630 FEEIIALISLYRPGPMDL--IKNFCRRKHGEYFNYP-----DPRTKDVLSETYGIMVYQE 682
FE+++A+I+LYRPGPM + ++ RK+ P + +++L+ETYG++VYQE
Sbjct: 656 FEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQE 715
Query: 683 QVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEI 742
Q+M+IAQ + YSL +AD+LR+A+GKKK + + + F +G G S +++ I
Sbjct: 716 QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775
Query: 743 EKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTC 802
FA Y FNKSHA Y ++SY+TAYLK +Y + +MA L+ DD +K + + D K
Sbjct: 776 LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK-L 834
Query: 803 GLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNL 861
G+++LPP++N S F + + IRYGLGA++ G + + +++ R G FT+
Sbjct: 835 GITVLPPDVNESGLNFASV------GQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDF 888
Query: 862 FDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLS 919
D+ +ID N+++ SLI +GAFD R L A+ + TKK + Q
Sbjct: 889 SDYLNKIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFD 948
Query: 920 LF-KNDDNNNLKEYLNYVKVPS--WSKKQELIEEKKVLGFCLSEH----IFCIYETEIRQ 972
LF NDD + + +KVP W K +L E+++LG +S H + + ++
Sbjct: 949 LFGSNDDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDT 1008
Query: 973 FIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKILIIV-IDDNSNSVEVIINNQLYEKN 1030
IP L P + V GI+ + + G ++D + +EV+ Y
Sbjct: 1009 AIPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSY 1068
Query: 1031 KNILKENELLIVSGKVL--EDRFLKNIRINAEKIFDINVARILYGKKFSVMFNR-TFN-I 1086
+ ++ +++V+ KV +DR + N + D + A + S+ + TF+ +
Sbjct: 1069 GADIVDDAVVLVNAKVAVRDDRIA--LIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKV 1126
Query: 1087 SILKKILLR 1095
S LK++L R
Sbjct: 1127 SALKQVLAR 1135
>sp|P63978|DPO3A_MYCBO DNA polymerase III subunit alpha OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaE PE=3 SV=1
Length = 1184
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 368/1149 (32%), Positives = 600/1149 (52%), Gaps = 79/1149 (6%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
F+HL H+EYS++DG +I ++ PA+ +TD N+FG +FY SA GIKP
Sbjct: 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68
Query: 64 IIGCDVWI-------TNEIENKKPSR-------------LLLLVKNNNGYLQLCELLSKA 103
IIG + +I T I PS+ L ++ +N G L +L S A
Sbjct: 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128
Query: 104 YIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF 163
E + + E + + + +G+I +G G++ ++ G++ A A +W +I
Sbjct: 129 SFEGQLSKWSRMDAELIAE--HAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIV 186
Query: 164 -PDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAE 222
PDN+++E+ + I +N+P +AT+ ++ + HE C+
Sbjct: 187 GPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQT 246
Query: 223 GEILSNTKRIKKFTKEQNFKTQSEMIKLFYD-IPSAIQNTIEIAKRCNLKLEFGKPK--L 279
G+ LS+ R K K+ +EM +++ D +P A +T+ IA+R + P+ +
Sbjct: 247 GKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRM 306
Query: 280 PKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNF 339
P FP P + +L + GL++R D Y++R +EI+ I F
Sbjct: 307 PVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPD---------GYRERAAYEIDVICSKGF 357
Query: 340 SGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRI 399
YFLIV+D I +A++ I VGPGRGS A SLVAY+L ITDIDP+ + LLFERFLNP R
Sbjct: 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417
Query: 400 SMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVL--DLRYSF 457
SMPD DIDF R +++Y D++G D V+Q++TFGT+ K A++D R+ ++
Sbjct: 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477
Query: 458 CDSISKLIPFK-PGKLITLSNAI-------KEEPQLAERIKNEEEVRQLIELAKQVEGII 509
D I+K +P K I LS KE ++ I+ + +VR + + A+ +EG+I
Sbjct: 478 ADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537
Query: 510 RNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSIL 569
RN G+HA V+++ L PL+K+ II+ +D E IGL+K DFLGL L+I+
Sbjct: 538 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597
Query: 570 DKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDY 629
I ++ + + L +PL+DK TY LL + +T+ VFQL+ M+++L+ +P
Sbjct: 598 GDAIDNVRA--NRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTG 655
Query: 630 FEEIIALISLYRPGPMDL--IKNFCRRKHGEYFNYP-----DPRTKDVLSETYGIMVYQE 682
FE+++A+I+LYRPGPM + ++ RK+ P + +++L+ETYG++VYQE
Sbjct: 656 FEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQE 715
Query: 683 QVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEI 742
Q+M+IAQ + YSL +AD+LR+A+GKKK + + + F +G G S +++ I
Sbjct: 716 QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775
Query: 743 EKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTC 802
FA Y FNKSHA Y ++SY+TAYLK +Y + +MA L+ DD +K + + D K
Sbjct: 776 LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK-L 834
Query: 803 GLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-GFFTNL 861
G+++LPP++N S F + + IRYGLGA++ G + + +++ R G FT+
Sbjct: 835 GITVLPPDVNESGLNFASV------GQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDF 888
Query: 862 FDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK--FINQLS 919
D+ +ID N+++ SLI +GAFD R L A+ + TKK + Q
Sbjct: 889 SDYLNKIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFD 948
Query: 920 LF-KNDDNNNLKEYLNYVKVPS--WSKKQELIEEKKVLGFCLSEH----IFCIYETEIRQ 972
LF NDD + + +KVP W K +L E+++LG +S H + + ++
Sbjct: 949 LFGSNDDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDT 1008
Query: 973 FIPIYLSELKPTYS-CTVSGIITELKLKTTYRGKILIIV-IDDNSNSVEVIINNQLYEKN 1030
IP L P + V GI+ + + G ++D + +EV+ Y
Sbjct: 1009 AIPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSY 1068
Query: 1031 KNILKENELLIVSGKVL--EDRFLKNIRINAEKIFDINVARILYGKKFSVMFNR-TFN-I 1086
+ ++ +++V+ KV +DR + N + D + A + S+ + TF+ +
Sbjct: 1069 GADIVDDAVVLVNAKVAVRDDRIA--LIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKV 1126
Query: 1087 SILKKILLR 1095
S LK++L R
Sbjct: 1127 SALKQVLAR 1135
>sp|Q9X7F0|DPO3A_MYCLE DNA polymerase III subunit alpha OS=Mycobacterium leprae (strain TN)
GN=dnaE PE=3 SV=1
Length = 1177
Score = 554 bits (1427), Expect = e-156, Method: Compositional matrix adjust.
Identities = 355/1081 (32%), Positives = 564/1081 (52%), Gaps = 84/1081 (7%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKP 63
F+HL H+EYS++DG +I + PA+ +TD N+FG +FY +A GIKP
Sbjct: 5 SFVHLHNHTEYSMLDGAAKITPMFAEVERLQMPAVGMTDHGNMFGASEFYNTAIKAGIKP 64
Query: 64 IIGCDVWI-------TNEIENKKPSR-------------LLLLVKNNNGYLQLCELLSKA 103
IIG + +I T I PS+ L ++ +N G L +L S A
Sbjct: 65 IIGVEAYIAPGSRFDTRRITWGDPSQKADDVSAGGAYTHLTMVAENAAGLRNLFKLSSLA 124
Query: 104 YIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF 163
E + + E + +Y +G+I +G G++ ++ G + A A +W +I
Sbjct: 125 SFEGQLSKWSRMDAELI--GEYAEGIIVTTGCPSGEVQTRLRLGHDREALESAAKWREIV 182
Query: 164 -PDNFYIEIQRFKQPNMNFQIQQ-----FINIASNINLPIVATHPIQFLKKTEFLAHEVR 217
PDN+++E+ + I+Q +NI +N+P +AT+ ++ + HE
Sbjct: 183 GPDNYFLELM-----DHGLSIEQRVREGLLNIGRKLNIPPLATNDCHYVTRDAVHNHEAL 237
Query: 218 TCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYD-IPSAIQNTIEIAKRCNLKLEFGK 276
C+ G+ LS+ R K K+ +EM +L+ D +P A +T+ IA+R + +
Sbjct: 238 LCVQTGKTLSDPNRFKFHGDGYYLKSAAEMRQLWDDEVPGACDSTLLIAERVQSYADVWE 297
Query: 277 PK--LPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETI 334
P+ +P FP P + +L + GLK+R + + Y +R +EI+ I
Sbjct: 298 PRNRMPVFPVPVGHDQASWLRHEVDAGLKRRFPDGPPN---------GYVERAAYEIDVI 348
Query: 335 IKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFL 394
F YFLIV+D + A++ I VGPGRGS A SL AY+L ITDIDP+ + LLFERFL
Sbjct: 349 CDKGFPAYFLIVADLVNHARSVGIRVGPGRGSAAGSLAAYALGITDIDPIPHGLLFERFL 408
Query: 395 NPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVL--D 452
NP R SMPD DIDF R +++Y D++G D V+Q++TFGT+ K A++D R+
Sbjct: 409 NPERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQ 468
Query: 453 LRYSFCDSISKLIPFK-PGKLITLSN-------AIKEEPQLAERIKNEEEVRQLIELAKQ 504
++ D I+K +P K I LS KE ++ I+ + +VR + + A+
Sbjct: 469 PGFAMADRITKALPPAIMAKDIPLSGITDPAHERFKEAAEVRSLIETDSDVRIIYQTARG 528
Query: 505 VEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLT 564
+EG+IRN G+HA V+++ L PL+K+ II+ +D E IGL+K DFLGL
Sbjct: 529 LEGLIRNAGVHACAVILSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLR 588
Query: 565 TLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKE 624
L+I+ I IK + + L +PL+D+ TY LL + +T+ VFQL+ M+++L+
Sbjct: 589 NLTIIGDAIENIK--TNRGIDLDLESVPLDDQATYELLGRGDTLGVFQLDGGPMRDLLRR 646
Query: 625 AKPDYFEEIIALISLYRPGPMDL--IKNFCRRKHGEYFNYP-----DPRTKDVLSETYGI 677
+P FE+I+A+++LYRPGPM + ++ RK+ P + +++L+ETYG+
Sbjct: 647 MQPTGFEDIVAVLALYRPGPMGMNAHNDYADRKNNRQVIKPIHPELEEPLREILAETYGL 706
Query: 678 MVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANE 737
+VYQEQ+M+IAQ + GYSL +AD+LR+A+GKKK + + + F G G S H
Sbjct: 707 IVYQEQIMRIAQKVAGYSLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFSVHAIKA 766
Query: 738 IFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKD 797
+++ I FA Y FNKSHA Y L+SY+TAYLK +++ +MA L+ DD +K + + D
Sbjct: 767 LWDIILPFADYAFNKSHAAGYGLISYWTAYLKANFAGEYMAGLLTSVGDDKDKAAVYLAD 826
Query: 798 AIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKF-G 856
K G+++LPP++N S F + IRYGLGA++ G + + +++ R G
Sbjct: 827 CRK-FGITVLPPDVNESVLDFASV------GADIRYGLGAVRNVGANVVGSLIKTRNAKG 879
Query: 857 FFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK--F 914
F + D+ +ID N+++ SLI +GAFD R L A+ + TKK
Sbjct: 880 KFADFSDYLNKIDITSCNKKVTESLIKAGAFDSLGHSRKGLFLVHADAVDSVLGTKKAEA 939
Query: 915 INQLSLFKNDDNNNLKEYLNYVKVPS--WSKKQELIEEKKVLGFCLSEH----IFCIYET 968
I Q LF D + + +KVP W K +L E+++LG +S H + +
Sbjct: 940 IGQFDLFGGTDGGT--DAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAA 997
Query: 969 EIRQFIPIYL-SELKPTYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQL 1026
++ IP L + V GI+ + + G +DD + +EV+
Sbjct: 998 QVDTAIPTILDGGVSNDTQVRVGGILAAVNRRVNKNGIPWASAQLDDLTGGIEVMFFPHT 1057
Query: 1027 Y 1027
Y
Sbjct: 1058 Y 1058
>sp|Q9Z618|DPO3A_STRCO DNA polymerase III subunit alpha OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=dnaE PE=3 SV=1
Length = 1179
Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust.
Identities = 366/1113 (32%), Positives = 584/1113 (52%), Gaps = 105/1113 (9%)
Query: 3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
P F HL +H++YS++DG R+ D+ +A +A++D NL G F+ SA G+
Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKKAGVT 63
Query: 63 PIIGCDVWITNE-------IENKKP-------------SRLLLLVKNNNGYLQLCELLSK 102
PIIG + ++ E I+ +P + + N+ G L L S
Sbjct: 64 PIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFRLSSD 123
Query: 103 AYIENINYGRAEIRIEWLEK---------NKYQDGLIALSGAHLGDIGIAVQNGRNDIAE 153
AY E WL+K +++ +G++A +G G++ ++ G D A
Sbjct: 124 AYAEG-----------WLQKWPRMDKETISQWSEGIVASTGCPSGEVQTRLRLGHFDEAL 172
Query: 154 NFARRWSKIFP-DNFYIEIQRFKQPNMNFQIQQ-----FINIASNINLPIVATHPIQFLK 207
A + IF D +++E+ + +I+ + I + +P + T+ +
Sbjct: 173 KAAADYQDIFGKDRYFLELM-----DHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTY 227
Query: 208 KTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQ----NTIE 263
E AH+ CI G+ LS+ R + K+ EM + D A Q NT
Sbjct: 228 AHEATAHDALLCIQTGKNLSDPDRFRFDGTGYYLKSTDEMYAI--DSSDAWQEGCANTRL 285
Query: 264 IAKRCNLKLEFGKPKL-PKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLR 322
IA+ + F K L PKF P+ + + + G+++R PE
Sbjct: 286 IAEMIDTTGMFEKRDLMPKFDIPEGFTEITWFQEEVRRGMERRFPGGV--PE-------D 336
Query: 323 YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDID 382
+K+ ++E++ II+M F GYFL+V+DFI WAKN I VGPGRGS A S+VAY++ ITD+D
Sbjct: 337 RQKQAEYEMDVIIQMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLD 396
Query: 383 PLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKG 442
P+ + L+FERFLNP R+SMPD DIDF R VI+YV ++YG D V+ I T+G + AK
Sbjct: 397 PIPHGLIFERFLNPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKN 456
Query: 443 AIRDVGRVLDLRYSFCDSISKLIPFKP-GKLITLSNAIKE--EPQLAER------IKNEE 493
AI+D RVL Y+ D ++K +P GK I L N I + P+ +E ++E
Sbjct: 457 AIKDSARVLGYPYAMGDRLTKAMPADVLGKGIDL-NGITDPTHPRYSEAGEIRSMYESEP 515
Query: 494 EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEI 553
+V+++I+ AK VEG++R +G+HA GV+++ +++ P++ + I+Q+D E +
Sbjct: 516 DVKKVIDTAKGVEGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESL 575
Query: 554 GLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQL 613
GL+K DFLGL L+I+D + +K + K + L LPL+D T+ LL++ +T+ VFQ
Sbjct: 576 GLLKMDFLGLRNLTIMDDAVKMVK--SNKGIDLDLLSLPLDDPTTFELLQRGDTLGVFQF 633
Query: 614 ESQGMKNMLKEAKPDYFEEIIALISLYRPGP--MDLIKNFCRRKHGEYFNYP-----DPR 666
+ M+++L+ KPD FE+I A+ +LYRPGP MD N+ RK+G P +
Sbjct: 634 DGGPMRSLLRLMKPDNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEP 693
Query: 667 TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAI 726
++VL+ TYG++VYQEQV + AQI+ GYSLG+AD+LRR +GKKK E+ ++ FQ GA
Sbjct: 694 LQEVLAVTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGAR 753
Query: 727 KYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMD 786
K G S +++ + FAGY FNK+H+ AY L+SY+T YLK +Y + +MAA L+ D
Sbjct: 754 KNGYSDEAIQALWDVLVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKD 813
Query: 787 DTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTI 846
D +K + + + + G+ +LPPN+N S F + D I +GL A++ G + +
Sbjct: 814 DKDKSAVYLNEC-RRMGIKVLPPNVNESMSNF--AAQGD---DVILFGLSAVRNVGTNVV 867
Query: 847 EAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVAL 905
E+I+ RK G + + D+ +++ N+R SLI +GAFD R L A + +
Sbjct: 868 ESIIKCRKAKGKYASFPDYLDKVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMI 927
Query: 906 KN--AEKTKKFINQLSLFKNDDNNNLKEYLNYVKV----PSWSKKQELIEEKKVLGFCLS 959
N A K K+ Q LF + E + V W K L +E+++LG +S
Sbjct: 928 DNVVAVKRKEAEGQFDLFGGMGDEQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVS 987
Query: 960 EHIFCIYETEIRQFIPIYLSELK-----PTYSCTVSGIITELKLKTTYRGKILIIV-IDD 1013
+H E + +S+L T+ GII+ L+ K T +G I ++D
Sbjct: 988 DHPLFGLEHVLSDKADAGISQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVED 1047
Query: 1014 NSNSVEVIINNQLYEKNKNILKENELLIVSGKV 1046
+ S+E + Y+ L E+ ++ V G++
Sbjct: 1048 LAGSLECMFFPATYQLVSTQLVEDAVVFVKGRL 1080
>sp|Q9RX08|DPO3A_DEIRA DNA polymerase III subunit alpha OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=dnaE PE=3 SV=1
Length = 1335
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 314/788 (39%), Positives = 466/788 (59%), Gaps = 53/788 (6%)
Query: 321 LRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITD 380
L+ +R ++E+ I M F YFLIV+D+I WAK++ I VGPGRGSGA SLVAY++ IT+
Sbjct: 468 LKLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSGAGSLVAYAIRITN 527
Query: 381 IDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAA 440
+DPL + LLFERFLNP+RISMPDFDIDF R VI YV+++YG D V+QI TFGTMA+
Sbjct: 528 LDPLEFELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTDKVAQIATFGTMAS 587
Query: 441 KGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIE 500
K ++DV RV+ L Y+ D +SKLIP K GK +L A + P + + + + ++ + E
Sbjct: 588 KACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLAEDAQLLEAYE 647
Query: 501 LAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDF 560
A+++EG+ R+ +HA GV+I +L N P+ + G + QYD +E+IGLIK DF
Sbjct: 648 FAQKLEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDMKSVEDIGLIKMDF 707
Query: 561 LGLTTLSILDKTIYFIKKINT----KTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQ 616
LGL TLS LD+ +++ T K +F + +P +D+ TY L+ + +T VFQLE
Sbjct: 708 LGLRTLSFLDEAKRILRESGTDFEEKYGDF--DHIPFDDEKTYELMSRGDTKGVFQLEGA 765
Query: 617 GMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFNYPD---PRTKD--- 669
G+ + + KP +IIAL +LYRPGPM+ I + RR HG E +Y P +K
Sbjct: 766 GIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGIEEVDYDKDGFPNSKQWLE 825
Query: 670 -VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKY 728
+L ETYGI VYQEQ+MQIA + GYSLG ADLLRRA+GKK EM R+ F GA +
Sbjct: 826 KILQETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVVGAKEK 885
Query: 729 GLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDT 788
G+ + + N++F+ ++ FA YGFNKSH+ AY +++Y TA+LK +Y FMAA L++ D+
Sbjct: 886 GVPEDEGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVQFMAALLTVERRDS 945
Query: 789 NKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEA 848
+K+ V DA K L +LPP+IN S F E +I +GL AIKG G+S +
Sbjct: 946 DKVAEYVSDARKM-DLHVLPPDINRSSSDFAVAGE------EILFGLYAIKGLGESAVLR 998
Query: 849 IVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKN 907
I+ ER K G F +L DF R+ K NR+ + SLI SGAFD F E R+ L+ S++ AL++
Sbjct: 999 ILEEREKAGAFKSLADFCSRLGNKVCNRKALESLIKSGAFDAFGE-RHQLIESLEDALED 1057
Query: 908 AEKTKKFINQLS------LFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH 961
A T + IN + +F ++ KE + +S + L EK+ LG +S H
Sbjct: 1058 AAGTAE-INARAQSGMSMMFGMEEVK--KERPLRSSIAPYSDLERLAIEKEALGLYISGH 1114
Query: 962 IFCIYETEIRQFIPIYLSELKPTYS-----------CTVSGIITELKLKTTYRGKILI-I 1009
+E +R+ +S+L ++ ++G+I + K T G ++
Sbjct: 1115 PLEQHEG-LREAASCRVSDLDAWFALQNVAPGKRQKAVLAGMIEGVVKKPTKSGGMMARF 1173
Query: 1010 VIDDNSNSVEVIINNQLYEK-NKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDI--- 1065
++ D S +E++ ++ Y++ ++ + L++ ED L+ I AE+I I
Sbjct: 1174 ILADESGQMELVAFSRAYDRIEPKLVNDTPALVIVELEAEDGGLRAI---AEEIVSIEQL 1230
Query: 1066 -NVARILY 1072
V +++Y
Sbjct: 1231 SEVPKVMY 1238
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 152/325 (46%), Gaps = 28/325 (8%)
Query: 4 QFIHLRLHSEYSIIDGLLRINDVI----EAAANDYQPALAITDLSNLFGIIKFYKSAYNK 59
+F HL H++YS++DG ++ D++ E PALA+TD N+ G + FY A
Sbjct: 23 KFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYAMGM 82
Query: 60 GIKPIIGCDVWITNEIENKKP-SR----------LLLLVKNNNGYLQLCELLSKAYIENI 108
+KPIIG + ++ ++ SR L LL ++ GY LC L S+ Y E
Sbjct: 83 EVKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEGY 142
Query: 109 NYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFY 168
Y + RI+ ++ G+IA SG ++ + GR D A + ++F DN++
Sbjct: 143 YY---KPRIDHELLQEHHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDNYF 199
Query: 169 IEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSN 228
IEIQ P A + + +VAT+ ++KK++ AHE I L++
Sbjct: 200 IEIQDHGLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLAD 259
Query: 229 TKRIKKFTKEQNFKTQSEM-----IKLFYDIPSAIQNTIEIAKRCNLKLEFGKPK---LP 280
R K E K EM + + + P NT IA+ CN++L GK + +P
Sbjct: 260 ENRFKFPCDEFYVKNLEEMQRALPVSEWGEEP--FDNTAHIAELCNVELPVGKKRQYQMP 317
Query: 281 KFPTPKNININDFLISKSKHGLKKR 305
+ P P+ ++ + L ++ G KR
Sbjct: 318 QLPIPEGRSMAEELRVQTYAGAVKR 342
>sp|P74750|DPO3A_SYNY3 DNA polymerase III subunit alpha (Fragments) OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dnaE-N PE=1 SV=2
Length = 1355
Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust.
Identities = 300/788 (38%), Positives = 463/788 (58%), Gaps = 60/788 (7%)
Query: 5 FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
F+ L +HS+YS++DG ++ +I+ A PA+A+TD ++G ++ K K IKPI
Sbjct: 3 FVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKPI 62
Query: 65 IGCDVWITN-EIE-NKKPSRL--LLLVKNNNGYLQLCELLSKAYIENIN----YGRAEIR 116
IG ++++ N +IE NK+ R ++L KNN GY L +L + + ++ I + R I
Sbjct: 63 IGNEMYVINGDIEINKRHRRFHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGIFARPCIN 122
Query: 117 IEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ 176
E LE+ Y++GLI S G++ A+ G D A A+ + +F D++Y+EIQ
Sbjct: 123 KELLEQ--YKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLEIQDHGS 180
Query: 177 PNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFT 236
+ IA +++ IVAT+ F+ + AH+ CI G++++ KR++ ++
Sbjct: 181 VEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLR-YS 239
Query: 237 KEQNFKTQSEMIKLFYD------IPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNINI 290
+ K+ EM LF D I +AI NT+E+A + G+P++P +P P N
Sbjct: 240 GTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIPPNHTP 299
Query: 291 NDFLISKSKHGLKKRLLNLYKDPEIYKCEKLR-----YKKRLQFEIETIIKMNFSGYFLI 345
++ + GL +RL KC + YK+RL++E+ + KM F YFL+
Sbjct: 300 ETYVEDIAWDGLLERL----------KCRERADITPVYKERLEYELRMLEKMGFCTYFLV 349
Query: 346 VSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFD 405
V D+I++A+++ IPVGPGRGS A SLVAY + IT+IDP+ + L+FERFLNP R SMPD D
Sbjct: 350 VWDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVD 409
Query: 406 IDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLI 465
DFC + RD +I+YV +YG+D V+QI+TF M +K ++DV RVLD+ Y+ D ++K+I
Sbjct: 410 TDFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMI 469
Query: 466 PF---KPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIA 522
P KP KL + + EPQ R NE V++ I++A ++EG + G+HA GV+I+
Sbjct: 470 PVSRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVIS 529
Query: 523 PSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTK 582
L PL K +I+QY +D+E +GL+K DFLGL L+ L + + + + TK
Sbjct: 530 SEPLDQIVPLQKNND-GAVITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAE--TK 586
Query: 583 TTNFSLNKLPLND-------------------KDTYNLLKKANTVAVFQLESQGMKNMLK 623
L+ LPL + K T+ LL+ + +FQLESQGMK +++
Sbjct: 587 GIELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVR 646
Query: 624 EAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVY 680
+ KP E+I ++++LYRPGP+D LI F RKHG E +Y + +L+ETYG++VY
Sbjct: 647 DLKPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGVLVY 706
Query: 681 QEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFN 740
QEQ+M++AQ L YSLG+ADLLRRA+GKKK EM +HR F +G+ K+G+ A +F+
Sbjct: 707 QEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLFD 766
Query: 741 EIEKFAGY 748
++ KFA Y
Sbjct: 767 QMVKFAEY 774
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 205/419 (48%), Gaps = 32/419 (7%)
Query: 745 FAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGL 804
A FNKSH+TAYA ++Y TAYLK +Y +MAA L+ S D K++ ++ + G+
Sbjct: 930 IAANCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVE-KYRENCQKMGI 988
Query: 805 SILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTER---KFGFFTNL 861
++ PP+IN S+ +F P+ E+ I +GL A++ G+ IE I+T R + F +L
Sbjct: 989 TVEPPDINRSQRHFTPLGEA------ILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSL 1042
Query: 862 FDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEK--TKKFINQLS 919
DF ++D + +NRR I +LI +GAFD R L+ +++ + A+K +K QL+
Sbjct: 1043 ADFCTQVDLRVVNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLN 1102
Query: 920 LF-----------KNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYET 968
+F K NN ++ + V +S +++L EK+ LGF +SEH +
Sbjct: 1103 IFDSLTAGESIKAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQR 1162
Query: 969 EIRQFIPIYLSEL---KPTYSCTVSGIITEL-KLKTTYRGK-ILIIVIDDNSNSVEVIIN 1023
R PI L +L K + I+ + K+ T G+ + + ++D S E ++
Sbjct: 1163 SARLLSPINLVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVF 1222
Query: 1024 NQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRT 1083
YE+ +++L E ++ GKV DR ++ E + + +++ T
Sbjct: 1223 PSNYERLQDVLIEGSQQMIWGKV--DRRDDQYQLIVEDLEPVEEVKMVMLDLTPQEIANT 1280
Query: 1084 FNISILKKILLRFKC-KNGLPFVLYYCINKS-IKYEMKFPLNYKVQPIDDLKLALINLG 1140
+ LK+IL K + + CIN+ K+ ++F NY V +L LG
Sbjct: 1281 STQARLKQILQSHAPQKEQMKIPVVACINEGPTKHFIRFGENYWVNDYGTAVASLQELG 1339
>sp|Q9F1K0|DPO3A_STAA8 DNA polymerase III subunit alpha OS=Staphylococcus aureus (strain
NCTC 8325) GN=dnaE PE=3 SV=1
Length = 1065
Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust.
Identities = 353/1057 (33%), Positives = 559/1057 (52%), Gaps = 110/1057 (10%)
Query: 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
+L +H+ Y +++ L+I D + A ++ ALAITD + L+G KFY + IKPI G
Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63
Query: 67 CDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQ 126
+++TN + + ++L KNN+G L +L S EI++ LE ++
Sbjct: 64 MTIYVTNGLNTVET---VVLAKNNDGLKDLYQLSS------------EIKMNALEHVSFE 108
Query: 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ---PNMNFQI 183
L+ ++ I V + DI + F + + D+ I IQ K N+ +Q
Sbjct: 109 --LLKRFSNNMIIIFKKVGDQHRDIVQVFETH-NDTYMDHLSISIQGRKHVWIQNVCYQT 165
Query: 184 QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
+Q + S + T + +F AH K I + Q + T
Sbjct: 166 RQDADTISALAAIRDNTKLDLIHDQEDFGAH-----------FLTEKEINQLDINQEYLT 214
Query: 244 QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
Q ++ IA++C+ +L++ + LP++ TP + + +L LK
Sbjct: 215 QVDV----------------IAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLK 258
Query: 304 KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
K LN Y Y +RL++E + I M F YFLIVSD I +AK N + VGPG
Sbjct: 259 KLELN-------YDV----YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPG 307
Query: 364 RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
RGS A SLV+Y L IT IDP+ +NLLFERFLNP R++MPD DIDF R+RVIQYV+++
Sbjct: 308 RGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEK 367
Query: 424 YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEP 483
YG+ VS IVTFG + A+ RDVGR++ + IS LIP K G ITL A + +
Sbjct: 368 YGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQID- 424
Query: 484 QLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIIS 543
E + + + K++EG+ R+ HA G++I L + PL K G TG+++
Sbjct: 425 DFKEFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK--GDTGLLT 482
Query: 544 QYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLK 603
Q+ + E IGL+K DFLGL LSI+ + + +KK N + K+P +D+ + LL
Sbjct: 483 QWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKK--DLGINIDIEKIPFDDQKVFELLS 540
Query: 604 KANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFNY 662
+ +T +FQLES G++++LK+ KP++FE+I+A+ SLYRPGPM+ I + R+H Y
Sbjct: 541 QGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQY 600
Query: 663 PDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQ 722
P + +L TYG+++YQEQ+MQIA +S G+AD+LRRA+ KK + + R+ F
Sbjct: 601 LHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFI 660
Query: 723 NGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLS 782
GA + G + + +IF+ I KFA YGF ++HA +Y+ ++Y ++LK HY ++F A LS
Sbjct: 661 EGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILS 720
Query: 783 LSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTG 842
+ K ++++A K G++ILPPNIN S +++ P E I +G IKG G
Sbjct: 721 NVIGSEKKTAQMIEEA-KKQGITILPPNINESHWFYKPSQEG------IYLSIGTIKGVG 773
Query: 843 KSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASI 901
+++ IV ER + G F + FDF +RI K+ R+++ +LI GAFD F + R L+ +I
Sbjct: 774 YQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAI 833
Query: 902 DVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS--WSKKQELIE------EKKV 953
D L D N +L + P + K+EL + EK+
Sbjct: 834 DQVL----------------DGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEY 877
Query: 954 LGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYSCTVSGIITEL----KLKTTYRGKILI 1008
LGF +S+H ++F+ YL+ K + + I+ + +++T +
Sbjct: 878 LGFYVSQHPVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAF 931
Query: 1009 IVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
+ ++D +++ +I ++K + +L N+L IVSGK
Sbjct: 932 VTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGK 968
>sp|P63980|DPO3A_STAAN DNA polymerase III subunit alpha OS=Staphylococcus aureus (strain
N315) GN=dnaE PE=3 SV=1
Length = 1065
Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust.
Identities = 356/1060 (33%), Positives = 562/1060 (53%), Gaps = 116/1060 (10%)
Query: 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
+L +H+ Y +++ L+I D + A ++ ALAITD + L+G KFY + IKPI G
Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63
Query: 67 CDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQ 126
+++TN + + ++L KNN+G L +L S EI++ +E ++
Sbjct: 64 MTIYVTNGLNTVET---VVLAKNNDGLKDLYQLSS------------EIKMNSMENVSFE 108
Query: 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ---PNMNFQI 183
L+ ++L I V + DI + F + D+ + +Q K N+ +Q
Sbjct: 109 --LLQQFSSNLIIIFKNVADEHRDIVQVFDSH-EDTYLDHQSVLVQGIKHVWIQNVCYQT 165
Query: 184 QQFINIASNINLPIVATHPIQFLKKTE-FLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+Q + S + I + + E F AH K IK+ Q +
Sbjct: 166 RQDADTISAL-AAIRDNAKLDLIHDQEDFGAH-----------FLTEKEIKQLDINQEYL 213
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
TQ ++I A++CN +L++ + LP++ TP + + +L L
Sbjct: 214 TQVDVI----------------AQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVTQL 257
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
KK LN Y Y +RL++E + I M F YFLIVSD I +AK N + VGP
Sbjct: 258 KKLELN-------YDV----YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGP 306
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGS A SLV+Y L IT IDP+ +NLLFERFLNP R++MPD DIDF R+RVIQYV++
Sbjct: 307 GRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQE 366
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA--IK 480
+YG+ VS IVTFG + A+ RDVGR++ + IS LIP K G ITL A I
Sbjct: 367 KYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQID 424
Query: 481 EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
+ + R E + + K++EG+ R+ HA G++I L + PL K G TG
Sbjct: 425 DFKKFVHRNHRHE---RWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK--GDTG 479
Query: 541 IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
+++Q+ + E IGL+K DFLGL LSI+ + + +KK N + K+P +D+ +
Sbjct: 480 LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKK--DLGINIDIEKIPFDDQKVFE 537
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EY 659
LL + +T +FQLES G++++LK+ KP++FE+I+A+ SLYRPGPM+ I + R+H
Sbjct: 538 LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597
Query: 660 FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
Y P + +L TYG+++YQEQ+MQIA +S G+AD+LRRA+ KK + + R+
Sbjct: 598 VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657
Query: 720 FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
F GA + G + + +IF+ I KFA YGF ++HA +Y+ ++Y ++LK HY ++F A
Sbjct: 658 HFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717
Query: 780 NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
LS + K ++++A K G++ILPPNIN S +++ P E I +G IK
Sbjct: 718 ILSNVIGSEKKTAQMIEEA-KKQGITILPPNINESHWFYKPSQEG------IYLSIGTIK 770
Query: 840 GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
G G +++ IV ER + G F + FDF +RI K+ R+++ +LI GAFD F + R L+
Sbjct: 771 GVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLL 830
Query: 899 ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS--WSKKQELIE------E 950
+ID L D N +L + P + K+EL + E
Sbjct: 831 QAIDQVL----------------DGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYE 874
Query: 951 KKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYSCTVSGIITEL----KLKTTYRGK 1005
K+ LGF +S+H ++F+ YL+ K + + I+ + +++T
Sbjct: 875 KEYLGFYVSQHPVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQN 928
Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
+ + ++D +++ +I ++K + +L N+L IVSGK
Sbjct: 929 MAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGK 968
>sp|P63979|DPO3A_STAAM DNA polymerase III subunit alpha OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=dnaE PE=1 SV=1
Length = 1065
Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust.
Identities = 356/1060 (33%), Positives = 562/1060 (53%), Gaps = 116/1060 (10%)
Query: 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
+L +H+ Y +++ L+I D + A ++ ALAITD + L+G KFY + IKPI G
Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63
Query: 67 CDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQ 126
+++TN + + ++L KNN+G L +L S EI++ +E ++
Sbjct: 64 MTIYVTNGLNTVET---VVLAKNNDGLKDLYQLSS------------EIKMNSMENVSFE 108
Query: 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ---PNMNFQI 183
L+ ++L I V + DI + F + D+ + +Q K N+ +Q
Sbjct: 109 --LLQQFSSNLIIIFKNVADEHRDIVQVFDSH-EDTYLDHQSVLVQGIKHVWIQNVCYQT 165
Query: 184 QQFINIASNINLPIVATHPIQFLKKTE-FLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK 242
+Q + S + I + + E F AH K IK+ Q +
Sbjct: 166 RQDADTISAL-AAIRDNAKLDLIHDQEDFGAH-----------FLTEKEIKQLDINQEYL 213
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
TQ ++I A++CN +L++ + LP++ TP + + +L L
Sbjct: 214 TQVDVI----------------AQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVTQL 257
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
KK LN Y Y +RL++E + I M F YFLIVSD I +AK N + VGP
Sbjct: 258 KKLELN-------YDV----YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGP 306
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGS A SLV+Y L IT IDP+ +NLLFERFLNP R++MPD DIDF R+RVIQYV++
Sbjct: 307 GRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQE 366
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA--IK 480
+YG+ VS IVTFG + A+ RDVGR++ + IS LIP K G ITL A I
Sbjct: 367 KYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQID 424
Query: 481 EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
+ + R E + + K++EG+ R+ HA G++I L + PL K G TG
Sbjct: 425 DFKKFVHRNHRHE---RWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK--GDTG 479
Query: 541 IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
+++Q+ + E IGL+K DFLGL LSI+ + + +KK N + K+P +D+ +
Sbjct: 480 LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKK--DLGINIDIEKIPFDDQKVFE 537
Query: 601 LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EY 659
LL + +T +FQLES G++++LK+ KP++FE+I+A+ SLYRPGPM+ I + R+H
Sbjct: 538 LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597
Query: 660 FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
Y P + +L TYG+++YQEQ+MQIA +S G+AD+LRRA+ KK + + R+
Sbjct: 598 VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657
Query: 720 FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
F GA + G + + +IF+ I KFA YGF ++HA +Y+ ++Y ++LK HY ++F A
Sbjct: 658 HFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717
Query: 780 NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
LS + K ++++A K G++ILPPNIN S +++ P E I +G IK
Sbjct: 718 ILSNVIGSEKKTAQMIEEA-KKQGITILPPNINESHWFYKPSQEG------IYLSIGTIK 770
Query: 840 GTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
G G +++ IV ER + G F + FDF +RI K+ R+++ +LI GAFD F + R L+
Sbjct: 771 GVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLL 830
Query: 899 ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS--WSKKQELIE------E 950
+ID L D N +L + P + K+EL + E
Sbjct: 831 QAIDQVL----------------DGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYE 874
Query: 951 KKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYSCTVSGIITEL----KLKTTYRGK 1005
K+ LGF +S+H ++F+ YL+ K + + I+ + +++T
Sbjct: 875 KEYLGFYVSQHPVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQN 928
Query: 1006 ILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
+ + ++D +++ +I ++K + +L N+L IVSGK
Sbjct: 929 MAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGK 968
>sp|Q5HF71|DPO3A_STAAC DNA polymerase III subunit alpha OS=Staphylococcus aureus (strain
COL) GN=dnaE PE=3 SV=1
Length = 1065
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 355/1059 (33%), Positives = 560/1059 (52%), Gaps = 114/1059 (10%)
Query: 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
+L +H+ Y +++ L+I D + A ++ ALAITD + L+G KFY + IKPI G
Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63
Query: 67 CDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQ 126
+++TN + + ++L KNN+G L +L S EI++ LE ++
Sbjct: 64 MTIYVTNGLNTVET---VVLAKNNDGLKDLYQLSS------------EIKMNALEHVSFE 108
Query: 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ---PNMNFQI 183
L+ ++ I V + DI + F + + D+ I IQ K N+ +Q
Sbjct: 109 --LLKRFSNNMIIIFKKVGDQHRDIVQVFETH-NDTYMDHLSISIQGRKHVWIQNVCYQT 165
Query: 184 QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
+Q + S + T + +F AH K I + Q + T
Sbjct: 166 RQDADTISALAAIRDNTKLDLIHDQEDFGAH-----------FLTEKEINQLDINQEYLT 214
Query: 244 QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
Q ++ IA++C+ +L++ + LP++ TP + + +L LK
Sbjct: 215 QVDV----------------IAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLK 258
Query: 304 KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
K LN Y Y +RL++E + I M F YFLIVSD I +AK N + VGPG
Sbjct: 259 KLELN-------YDV----YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPG 307
Query: 364 RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
RGS A SLV+Y L IT IDP+ +NLLFERFLNP R++MPD DIDF R+RVIQYV+++
Sbjct: 308 RGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEK 367
Query: 424 YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA--IKE 481
YG+ VS IVTFG + A+ RDVGR++ + IS LIP K G ITL A I +
Sbjct: 368 YGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDD 425
Query: 482 EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
+ R E + + K++EG+ R+ HA G++I L + PL K G TG+
Sbjct: 426 FKKFVHRNHRHE---RWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK--GDTGL 480
Query: 542 ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
++Q+ + E IGL+K DFLGL LSI+ + + +KK N + K+P +D+ + L
Sbjct: 481 LTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKK--DLGINIDIEKIPFDDQKVFEL 538
Query: 602 LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
L + +T +FQLES G++++LK+ KP++FE+I+A+ SLYRPGPM+ I + R+H
Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598
Query: 661 NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
Y P + +L TYG+++YQEQ+MQIA +S G+AD+LRRA+ KK + + R+
Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658
Query: 721 FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
F GA + G + + +IF+ I KFA YGF ++HA +Y+ ++Y ++LK HY ++F A
Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718
Query: 781 LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
LS + K ++++A K G++ILPPNIN S +++ P E I +G IKG
Sbjct: 719 LSNVIGSEKKTAQMIEEA-KKQGITILPPNINESHWFYKPSQEG------IYLSIGTIKG 771
Query: 841 TGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
G +++ IV ER + G F + FDF +RI K+ R+++ +LI GAFD F + R L+
Sbjct: 772 VGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831
Query: 900 SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS--WSKKQELIE------EK 951
+ID L D N +L + P + K+EL + EK
Sbjct: 832 AIDQVL----------------DGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEK 875
Query: 952 KVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYSCTVSGIITEL----KLKTTYRGKI 1006
+ LGF +S+H ++F+ YL+ K + + I+ + +++T +
Sbjct: 876 EYLGFYVSQHPVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNM 929
Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
+ ++D +++ +I ++K + +L N+L IVSGK
Sbjct: 930 AFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGK 968
>sp|Q8NW58|DPO3A_STAAW DNA polymerase III subunit alpha OS=Staphylococcus aureus (strain
MW2) GN=dnaE PE=3 SV=1
Length = 1065
Score = 530 bits (1364), Expect = e-149, Method: Compositional matrix adjust.
Identities = 355/1059 (33%), Positives = 560/1059 (52%), Gaps = 114/1059 (10%)
Query: 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
+L +H+ Y +++ L+I D + A ++ ALAITD + L+G KFY + IKPI G
Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63
Query: 67 CDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQ 126
+++TN + + ++L KNN+G L +L S EI++ LE ++
Sbjct: 64 MTIYVTNGLNTVET---VVLAKNNDGLKDLYQLSS------------EIKMNALEHVSFE 108
Query: 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ---PNMNFQI 183
L+ ++ I V + DI + F + + D+ I IQ K N+ +Q
Sbjct: 109 --LLKRFSNNMIIIFKKVGDQHRDIVQVFETH-NDTYMDHLSISIQGRKHVWIQNVCYQT 165
Query: 184 QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
+Q + S + T + +F AH K I + Q + T
Sbjct: 166 RQDADTISALAAIRDNTKLDLIHDQEDFGAH-----------FLTEKEINQLDINQEYLT 214
Query: 244 QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
Q ++ IA++C+ +L++ + LP++ TP + + +L LK
Sbjct: 215 QVDV----------------IAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLK 258
Query: 304 KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
K LN Y Y +RL++E + I M F YFLIVSD I +AK N + VGPG
Sbjct: 259 KLELN-------YDV----YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPG 307
Query: 364 RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
RGS A SLV+Y L IT IDP+ +NLLFERFLNP R++MPD DIDF R+RVIQYV+++
Sbjct: 308 RGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEK 367
Query: 424 YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA--IKE 481
YG+ VS IVTFG + A+ RDVGR++ + IS LIP K G ITL A I +
Sbjct: 368 YGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDD 425
Query: 482 EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
+ R E + + K++EG+ R+ HA G++I L + PL K G TG+
Sbjct: 426 FKKFVHRNHRHE---RWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK--GDTGL 480
Query: 542 ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
++Q+ + E IGL+K DFLGL LSI+ + + +KK N + K+P +D+ + L
Sbjct: 481 LTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKK--DLGINIDIEKIPFDDQKVFEL 538
Query: 602 LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
L + +T +FQLES G++++LK+ KP++FE+I+A+ SLYRPGPM+ I + R+H
Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598
Query: 661 NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
Y P + +L TYG+++YQEQ+MQIA +S G+AD+LRRA+ KK + + R+
Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658
Query: 721 FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
F GA + G + + +IF+ I KFA YGF ++HA +Y+ ++Y ++LK HY ++F A
Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718
Query: 781 LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
LS + K ++++A K G++ILPPNIN S +++ P E I +G IKG
Sbjct: 719 LSNVIGSEKKTAQMIEEA-KKQGITILPPNINESHWFYKPSQEG------IYLSIGTIKG 771
Query: 841 TGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
G +++ IV ER + G F + FDF +RI K+ R+++ +LI GAFD F + R L+
Sbjct: 772 VGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831
Query: 900 SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS--WSKKQELIE------EK 951
+ID L D N +L + P + K+EL + EK
Sbjct: 832 AIDQVL----------------DGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEK 875
Query: 952 KVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYSCTVSGIITEL----KLKTTYRGKI 1006
+ LGF +S+H ++F+ YL+ K + + I+ + +++T +
Sbjct: 876 EYLGFYVSQHPVD------KKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNM 929
Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
+ ++D +++ +I ++K + +L N+L IVSGK
Sbjct: 930 AFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGK 968
>sp|Q6G8M4|DPO3A_STAAS DNA polymerase III subunit alpha OS=Staphylococcus aureus (strain
MSSA476) GN=dnaE PE=3 SV=1
Length = 1065
Score = 530 bits (1364), Expect = e-149, Method: Compositional matrix adjust.
Identities = 355/1059 (33%), Positives = 560/1059 (52%), Gaps = 114/1059 (10%)
Query: 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
+L +H+ Y +++ L+I D + A ++ ALAITD + L+G KFY + IKPI G
Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63
Query: 67 CDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQ 126
+++TN + + ++L KNN+G L +L S EI++ LE ++
Sbjct: 64 MTIYVTNGLNTVET---VVLAKNNDGLKDLYQLSS------------EIKMNALEHVSFE 108
Query: 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQ---PNMNFQI 183
L+ ++ I V + DI + F + + D+ I IQ K N+ +Q
Sbjct: 109 --LLKRFSNNMIIIFKKVGDQHRDIVQVFETH-NDTYMDHLSISIQGRKHVWIQNVCYQT 165
Query: 184 QQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKT 243
+Q + S + T + +F AH K I + Q + T
Sbjct: 166 RQDADTISALAAIRDNTKLDLIHDQEDFGAH-----------FLTEKEINQLDINQEYLT 214
Query: 244 QSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLK 303
Q ++ IA++C+ +L++ + LP++ TP + + +L LK
Sbjct: 215 QVDV----------------IAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLK 258
Query: 304 KRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPG 363
K LN Y Y +RL++E + I M F YFLIVSD I +AK N + VGPG
Sbjct: 259 KLELN-------YDV----YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPG 307
Query: 364 RGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDR 423
RGS A SLV+Y L IT IDP+ +NLLFERFLNP R++MPD DIDF R+RVIQYV+++
Sbjct: 308 RGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEK 367
Query: 424 YGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNA--IKE 481
YG+ VS IVTFG + A+ RDVGR++ + IS LIP K G ITL A I +
Sbjct: 368 YGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDD 425
Query: 482 EPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGI 541
+ R E + + K++EG+ R+ HA G++I L + PL K G TG+
Sbjct: 426 FKKFVHRNHRHE---RWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK--GDTGL 480
Query: 542 ISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNL 601
++Q+ + E IGL+K DFLGL LSI+ + + +KK N + K+P +D+ + L
Sbjct: 481 LTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKK--DLGINIDIEKIPFDDQKVFEL 538
Query: 602 LKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYF 660
L + +T +FQLES G++++LK+ KP++FE+I+A+ SLYRPGPM+ I + R+H
Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598
Query: 661 NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
Y P + +L TYG+++YQEQ+MQIA +S G+AD+LRRA+ KK + + R+
Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658
Query: 721 FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
F GA + G + + +IF+ I KFA YGF ++HA +Y+ ++Y ++LK HY ++F A
Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718
Query: 781 LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
LS + K ++++A K G++ILPPNIN S +++ P E I +G IKG
Sbjct: 719 LSNVIGSEKKTAQMIEEA-KKQGITILPPNINESHWFYKPSQEG------IYLSIGTIKG 771
Query: 841 TGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
G +++ IV ER + G F + FDF +RI K+ R+++ +LI GAFD F + R L+
Sbjct: 772 VGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831
Query: 900 SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPS--WSKKQELIE------EK 951
+ID L D N +L + P + K+EL + EK
Sbjct: 832 AIDQVL----------------DGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEK 875
Query: 952 KVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYSCTVSGIITEL----KLKTTYRGKI 1006
+ LGF +S+H ++F+ YL+ K + + I+ + +++T +
Sbjct: 876 EYLGFYVSQHPVD------KKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNM 929
Query: 1007 LIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
+ ++D +++ +I ++K + +L N+L IVSGK
Sbjct: 930 AFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGK 968
>sp|Q5HNK2|DPO3A_STAEQ DNA polymerase III subunit alpha OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=dnaE PE=3 SV=1
Length = 1065
Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust.
Identities = 355/1055 (33%), Positives = 558/1055 (52%), Gaps = 106/1055 (10%)
Query: 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
HL +H+ + ++D LRI+ +I+ A + ALAITD + L+G KFY + I PI G
Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63
Query: 67 CDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQ 126
+++T+ + + ++L KNN G L +L S + N + E+ IEWL+ +Y
Sbjct: 64 MTIYLTDGLYTIET---VVLAKNNQGLKSLYQLSSAIMMRN----KEEVPIEWLK--RYD 114
Query: 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQF 186
+ HL I + + + F + + +
Sbjct: 115 E--------HLIIIFKEAELSHKQVIDAFEGKK------------------------ELY 142
Query: 187 INIASNINLPIVATHPIQFLKKTEFL-AHEVRTCIAEGEILSNTKR---IKKFTKEQNFK 242
+N SN L T +++ +L + T A I NTK +K T +++F
Sbjct: 143 LNHNSNNTL----TGKRVWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETLDEHFP 198
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
+ E+ L I N EI + C ++ + + LP+F TP D+L + H L
Sbjct: 199 SIEELQTLNLS-EDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYLWTILIHRL 257
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++ LN Y RL+ E + I M F YFLIVSD I +AK + + VGP
Sbjct: 258 REWELN-----------DKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHEVMVGP 306
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGS A SLV+Y L IT IDPL YNLLFERFLNP R++MPD DIDF R++VI+YV+D
Sbjct: 307 GRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVIKYVQD 366
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
+YG+ VS IVTFG + A+ RDVGR++ + + ISKLIP K G ITL A ++
Sbjct: 367 KYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEEAY-QK 423
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
P+ + + E++K++EG+ R+ HA G++I L F PL G TG++
Sbjct: 424 PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGDTGLL 481
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
+Q+ + E IGL+K DFLGL LSI+ + I +KK N + +P +DK ++LL
Sbjct: 482 TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKK--DLNINIDIEAIPYDDKKVFDLL 539
Query: 603 KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
+T +FQLES G++++LK +P++FE+I+A+ SLYRPGPM+ I + R+H
Sbjct: 540 SNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEISTYITRRHNPNQVA 599
Query: 662 YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
Y P + +L TYG+++YQEQ+M IA + G+S G+AD+LRRA+ KK + + R+ F
Sbjct: 600 YLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQHF 659
Query: 722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
+GA G + + +IF+ I KFA YGF ++HA +Y+ ++Y +YLK HY +F A L
Sbjct: 660 IDGAKNNGYDEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYANIL 719
Query: 782 SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGT 841
S + K ++ +A K +SILPPNIN S +Y+ +K I LG IKG
Sbjct: 720 SNVIGSEKKTAAMIDEA-KHQRISILPPNINQSHWYY------KASNKGIYLSLGTIKGI 772
Query: 842 GKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
G +++ I+ ER+ G + + FDF++RI K+ NR+++ SLI GAFD F + R L+ +
Sbjct: 773 GYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQA 832
Query: 901 IDVALKNAEKTKKFINQLSLFKNDDNNNLK--EYLNYVKVP--SWSKKQELIE------E 950
ID L D N++++ E L + P S+ +K+EL + E
Sbjct: 833 IDQVL------------------DLNSDVEQDEMLFDLLTPKQSYEEKEELPDQLLSDYE 874
Query: 951 KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIV 1010
K+ LGF +S+H + E +Q++ I+ Y + +++T + +
Sbjct: 875 KEYLGFYISKHP-VEKKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNMAFVT 933
Query: 1011 IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
++D ++ +I ++K + + + ++ IV GK
Sbjct: 934 MNDGRTMMDGVIFPDKFKKYETSISKEQMYIVLGK 968
>sp|P34699|DPO3A_SACEN DNA polymerase III subunit alpha OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=dnaE PE=3 SV=2
Length = 1194
Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust.
Identities = 363/1137 (31%), Positives = 594/1137 (52%), Gaps = 99/1137 (8%)
Query: 2 IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGI 61
+ F+HL +H+EYS++DG ++ + A PA+ +TD N+FG +FY+ A GI
Sbjct: 3 VDPFVHLHVHTEYSMLDGAAKVGALFAEAQRLEMPAVGMTDHGNMFGADEFYQQAKKTGI 62
Query: 62 KPIIGCDVWITNEIE-NKKP--------------------------SRLLLLVKNNNGYL 94
KPIIG + ++ +KKP + + +L +N G
Sbjct: 63 KPIIGIEAYLAPGSRFHKKPVFWGEAKQRGTDEYGEGGDVSGAGAYTHMTMLARNATGLR 122
Query: 95 QLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAEN 154
L L S+A +E Y + + E + + Y +G+IA +G G++ ++ + D A
Sbjct: 123 NLFTLSSRASMEG-QYRKPRMDRELVAE--YAEGIIATTGCPSGEVQTRLRLRQFDEAMQ 179
Query: 155 FARRWSKIF-PDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLA 213
A + IF +NF++E+ P + + IA + L VAT+ ++ + +
Sbjct: 180 AASDYKDIFGAENFFLELMDHGLPIERSVREGLLKIAKELGLKPVATNDSHYVTADQAES 239
Query: 214 HEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYD--IPSAIQNTIEIAKRCNLK 271
H C+ G+ L++ R K K+ +EM + ++D +P A NT+ IA+R
Sbjct: 240 HGALLCVQSGKTLNDESRFKFDGDGYYLKSAAEM-REYWDKEVPGAADNTLLIAERVESY 298
Query: 272 LEFG--KPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQF 329
+ + ++P+ L ++ + L R Y + +C R++
Sbjct: 299 EDVWSFQDRMPRVTDGSGKTERQLLEAEVEQYLPTR----YPEGATQEC-----LDRIKV 349
Query: 330 EIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLL 389
E++ + + YFL+V D +WAK+ I VGPGRGS A SL+AY L IT++DPL + L+
Sbjct: 350 ELDVLDTKGYCAYFLVVGDLTRWAKSQGIHVGPGRGSAAGSLLAYILHITNLDPLEHGLI 409
Query: 390 FERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGR 449
FERFLNP R S PD D+DF RD V+QY D+YG+D V+Q++TFG + K AI+D R
Sbjct: 410 FERFLNPERDSPPDIDLDFDDRRRDEVLQYAIDKYGRDKVAQVITFGKIKTKAAIKDSAR 469
Query: 450 VLDLRYSF--CDSISKLIPFK-PGKLITLSNAIKEEPQLAERIKNEEEVRQLIE------ 500
V + F D ISK +P K I LS + +PQ ER EVR LIE
Sbjct: 470 VHHGQPGFAIADKISKALPPPIAAKDIPLSGIV--DPQ-HERYAEAAEVRNLIETDPSVS 526
Query: 501 ----LAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLI 556
A+ +EG+IRN G+HA V+++ L+ PL+ ++ + II+ +D E IGL+
Sbjct: 527 QIFDTARGLEGLIRNAGVHACAVILSSQPLMGTVPLWARDDGS-IITGWDYPSCEAIGLL 585
Query: 557 KFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQ 616
K DFLGL+ L+IL + +K + + + L+ L L+D TY LL + ++ VFQLE
Sbjct: 586 KMDFLGLSNLTILGDALKMVKANHDREID--LSNLGLDDAKTYELLARGESLGVFQLEGG 643
Query: 617 GMKNMLKEAKPDYFEEIIALISLYRPGPMDL--IKNFCRRKHGEYFNYP-----DPRTKD 669
GM+ +LK +P F +I+A +LYRPGPM++ ++ RK+G+ P D KD
Sbjct: 644 GMRELLKRMQPTEFADIVACNALYRPGPMEVNAHNDYADRKNGKKPVEPIHPDLDEPLKD 703
Query: 670 VLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYG 729
+LSETYG++VYQEQ+M IAQ + GYSLG+AD+LRRA+GKKK + + + FQ G + G
Sbjct: 704 ILSETYGLIVYQEQIMAIAQKVAGYSLGRADILRRAMGKKKKEVLDQEFEGFQAGMREQG 763
Query: 730 LSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTN 789
++++ + FAGY FNKSHA YAL++Y+TAYLK +Y + +MAA L+ + D+ +
Sbjct: 764 FRDEAIDKLWATVLPFAGYAFNKSHAAGYALVAYWTAYLKANYPAEYMAALLTSNGDNKD 823
Query: 790 KIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAI 849
K+ + + + + G+ +L P++N S F + SD IR+GL A++ G + + +I
Sbjct: 824 KMAVYLAE-CRRMGVKVLSPDVNDS-LNDFTAVGSD-----IRFGLSAVRNVGSNVVASI 876
Query: 850 VTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV----ASIDVA 904
R+ G +++ DF + + N+R+I SLI +GAFD R L A++D
Sbjct: 877 AKVREDKGRYSSFTDFLDKSETVACNKRVIESLIKAGAFDSLGHTRMSLAQHHEAAVDAV 936
Query: 905 LKNAEKTKKFINQLSLF------KNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
+ K ++ + Q LF +++++ +L + W +KQ L E+++LG +
Sbjct: 937 I--GLKRQQALGQFDLFGGGDDAGGEESSSPLAHLQFTP-DEWPRKQMLSYEREMLGLYV 993
Query: 959 SEHIFCIYETEIRQFIPIYLSEL------KPTYSCTVSGIITELKLKTTYRGK-ILIIVI 1011
S H E + + ++EL ++G+I+ ++ + G I+ +
Sbjct: 994 SAHPLDGAERLLAPYQDTGIAELVGGEREAGKDQVKIAGMISGIQRRINKNGHPWAIVTL 1053
Query: 1012 DDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVA 1068
+D SVEV+ + YE + L E+ + V G++ E +I + DI+ A
Sbjct: 1054 EDLDASVEVLFFPKSYEMFADCLVEDTAIAVKGRINEREGTISIFASDAVPVDISAA 1110
>sp|Q8CNX0|DPO3A_STAES DNA polymerase III subunit alpha OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=dnaE PE=3 SV=1
Length = 1065
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 355/1055 (33%), Positives = 558/1055 (52%), Gaps = 106/1055 (10%)
Query: 7 HLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIG 66
HL +H+ + ++D LRI+ +I+ A + ALAITD + L+G KFY + I PI G
Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63
Query: 67 CDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQ 126
+++T+ + + ++L KNN G L ++ S + N + E+ IEWL+ +Y
Sbjct: 64 MTIYLTDGLYTIET---VVLAKNNQGLKSLYQISSAIMMRN----KEEVPIEWLK--RYD 114
Query: 127 DGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQF 186
+ HL I + I + F + + +
Sbjct: 115 E--------HLIIIFKEAELSHKQIIDAFEGKK------------------------ELY 142
Query: 187 INIASNINLPIVATHPIQFLKKTEFL-AHEVRTCIAEGEILSNTKR---IKKFTKEQNFK 242
+N SN L T +++ +L + T A I NTK +K T +++F
Sbjct: 143 LNHNSNNTL----TGKRVWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETLDEHFP 198
Query: 243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGL 302
+ E+ L I N EI + C ++ + + LP+F TP D+L + H L
Sbjct: 199 SIEELQTLNLS-EDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYLWTILIHRL 257
Query: 303 KKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGP 362
++ LN Y RL+ E + I M F YFLIVSD I +AK + + VGP
Sbjct: 258 REWELN-----------DKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHEVMVGP 306
Query: 363 GRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKD 422
GRGS A SLV+Y L IT IDPL YNLLFERFLNP R++MPD DIDF R++VI+YV+D
Sbjct: 307 GRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVIKYVQD 366
Query: 423 RYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE 482
+YG+ VS IVTFG + A+ RDVGR++ + + ISKLIP K G ITL A ++
Sbjct: 367 KYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEEAY-QK 423
Query: 483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGII 542
P+ + + E++K++EG+ R+ HA G++I L F PL G TG++
Sbjct: 424 PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGDTGLL 481
Query: 543 SQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLL 602
+Q+ + E IGL+K DFLGL LSI+ + I +KK N + +P +DK ++LL
Sbjct: 482 TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKK--DLNINIDIEAIPYDDKKVFDLL 539
Query: 603 KKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHG-EYFN 661
+T +FQLES G++++LK +P++FE+I+A+ SLYRPGPM+ I + R+H
Sbjct: 540 SNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQVA 599
Query: 662 YPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF 721
Y P + +L TYG+++YQEQ+M IA + G+S G+AD+LRRA+ KK + + R+ F
Sbjct: 600 YLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQHF 659
Query: 722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANL 781
+GA G + + +IF+ I KFA YGF ++HA +Y+ ++Y +YLK HY +F A L
Sbjct: 660 IDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYANIL 719
Query: 782 SLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGT 841
S + K ++ +A K +SILPPNIN S +Y+ +K I LG IKG
Sbjct: 720 SNVIGSEKKTAAMIDEA-KHQRISILPPNINQSHWYY------KASNKGIYLSLGTIKGI 772
Query: 842 GKSTIEAIVTERKF-GFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVAS 900
G +++ I+ ER+ G + + FDF++RI K+ NR+++ SLI GAFD F + R L+ +
Sbjct: 773 GYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQA 832
Query: 901 IDVALKNAEKTKKFINQLSLFKNDDNNNLK--EYLNYVKVP--SWSKKQELIE------E 950
ID L D N++++ E L + P S+ +K+EL + E
Sbjct: 833 IDQVL------------------DLNSDVEQDEMLFDLLTPKQSYEEKEELPDQLLSDYE 874
Query: 951 KKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIV 1010
K+ LGF +S+H + E +Q++ I+ Y + +++T + +
Sbjct: 875 KEYLGFYISKHP-VEKKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNMAFVT 933
Query: 1011 IDDNSNSVEVIINNQLYEKNKNILKENELLIVSGK 1045
++D ++ +I ++K + + + ++ IV GK
Sbjct: 934 MNDGRTMMDGVIFPDKFKKFETSISKEQMYIVLGK 968
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,539,294
Number of Sequences: 539616
Number of extensions: 18885878
Number of successful extensions: 54839
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 53068
Number of HSP's gapped (non-prelim): 635
length of query: 1149
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1020
effective length of database: 121,958,995
effective search space: 124398174900
effective search space used: 124398174900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)